BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004704
(735 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 206/672 (30%), Positives = 313/672 (46%), Gaps = 60/672 (8%)
Query: 1 MNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLSHNN 55
++L RN + P+ +T L + + LK L++SSN L+ P +S L SLE LDLS N+
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANS 162
Query: 56 FEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF 113
G + + + +L+ L +S + V + L L ++ N + P F
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGIP-F 218
Query: 114 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 173
L L++LD+S NKL G+F + + +L++L + +N F G +P L +L
Sbjct: 219 LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLS 275
Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
++ N F G++P + L +D+S N F G +P G L L LS N FSG L
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 293
+ L++LDLS N F G+ NL S SL
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SASLLT 372
Query: 294 LDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 352
LD+S+N SG I P+ N + L+ L + N G +P L+N L L +S N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 353 PIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
I SSL +LS + L L N L G IP EL L TL L N +G IP ++ +NL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 412 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDVLNG 469
++ L N L G IP + +L+ LA++ LS N FSG+IP + S W + ++ NG
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 470 SKLNSPELDEEIEFGS----------LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
+ + + + + + + N+ G L R+ R+
Sbjct: 553 T-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 520 AMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGS 573
+Y G N + LD+S N L+G IP +IG + + GS
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 574 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 633
IP+ +L+ + LD+S NKL G+IP ++AL L+ ++S NNLSG P+ GQF TF
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731
Query: 634 SSYRGNPSLCAW 645
+ + NP LC +
Sbjct: 732 AKFLNNPGLCGY 743
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 152/522 (29%), Positives = 225/522 (43%), Gaps = 67/522 (12%)
Query: 101 LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNS--FSG 157
L+ ++NGS F L LDLS N L G T L + L+ L + +N+ F G
Sbjct: 84 LSNSHINGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 158 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ----KLMYMDISKNCFEGNIPYSAG 213
+ K + L LD+S N+ G + +G +L +L ++ IS N G++ S
Sbjct: 143 KVS-GGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS-- 197
Query: 214 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 273
L LD+S N FS G+ + C +L+ LD+S N G F T L+ L
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 274 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 333
+N F G I L SLQ L ++ N +G IP ++ L L +S NH G VP
Sbjct: 256 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 334 LNNLERLRILDISENRLSG--PIASSLNLSSVEHLSLQKNALNGLIPGELFR-SCKLVTL 390
+ L L +S N SG P+ + L + ++ L L N +G +P L S L+TL
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 391 NLRDNTFSGRIPHQI--NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 448
+L N FSG I + N + L+ L L N G IP L +L + LS N SG+
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 449 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKR 508
IP ++ SKL +L WL+ LE
Sbjct: 434 IPSSLGSL-------------SKLRDLKL-----------------------WLNMLEGE 457
Query: 509 AAID-------ERVEIEFAMKNRYEIYNG-SNVNRVTGLDLSCNQLTGEIPSDIGQLQAI 560
+ E + ++F EI +G SN + + LS N+LTGEIP IG+L+ +
Sbjct: 458 IPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 561 LAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQL 602
G+IP + + + LD++ N G IP +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 368 LQKNALNGLIPGELFR-SCKLVTLNLRDNTFSGRIPH--QINEHSNLRFLLLGGNHLQ-- 422
L + +NG + G F+ S L +L+L N+ SG + + S L+FL + N L
Sbjct: 84 LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 423 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD-------VLNGSKLNSP 475
G + L +L L ++DLS N SG ANV+ W V SD ++G+K+ S
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISG------ANVVGW-VLSDGCGELKHLAISGNKI-SG 192
Query: 476 ELDEE----IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531
++D +EF + +N S T SAL+ ++ +F+ S
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRAI-------S 244
Query: 532 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSN-LKMIESLDIS 590
+ L++S NQ G IP L+++ G IP+ S + LD+S
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
N G +PP + + L +S NN SG P
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 206/672 (30%), Positives = 313/672 (46%), Gaps = 60/672 (8%)
Query: 1 MNLERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISN---LTSLEYLDLSHNN 55
++L RN + P+ +T L + + LK L++SSN L+ P +S L SLE LDLS N+
Sbjct: 102 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANS 159
Query: 56 FEGMFPLSSLANHS--KLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF 113
G + + + +L+ L +S + V + L L ++ N + P F
Sbjct: 160 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLDVSSNNFSTGIP-F 215
Query: 114 LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 173
L L++LD+S NKL G+F + + +L++L + +N F G +P L +L
Sbjct: 216 LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLS 272
Query: 174 ISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233
++ N F G++P + L +D+S N F G +P G L L LS N FSG L
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 293
+ L++LDLS N F G+ NL S SL
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNL-----------------------SASLLT 369
Query: 294 LDISNNMLSGHI-PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG 352
LD+S+N SG I P+ N + L+ L + N G +P L+N L L +S N LSG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 353 PIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
I SSL +LS + L L N L G IP EL L TL L N +G IP ++ +NL
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 412 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS--WRVGSDDVLNG 469
++ L N L G IP + +L+ LA++ LS N FSG+IP + S W + ++ NG
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 470 SKLNSPELDEEIEFGS----------LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519
+ + + + + + + N+ G L R+ R+
Sbjct: 550 T-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 520 AMKNRYEIYNG------SNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGS 573
+Y G N + LD+S N L+G IP +IG + + GS
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 574 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDE 633
IP+ +L+ + LD+S NKL G+IP ++AL L+ ++S NNLSG P+ GQF TF
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 728
Query: 634 SSYRGNPSLCAW 645
+ + NP LC +
Sbjct: 729 AKFLNNPGLCGY 740
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 152/522 (29%), Positives = 225/522 (43%), Gaps = 67/522 (12%)
Query: 101 LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWL-LRNNPKLEVLLLKNNS--FSG 157
L+ ++NGS F L LDLS N L G T L + L+ L + +N+ F G
Sbjct: 81 LSNSHINGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 158 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ----KLMYMDISKNCFEGNIPYSAG 213
+ K + L LD+S N+ G + +G +L +L ++ IS N G++ S
Sbjct: 140 KVS-GGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS-- 194
Query: 214 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 273
L LD+S N FS G+ + C +L+ LD+S N G F T L+ L
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 274 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 333
+N F G I L SLQ L ++ N +G IP ++ L L +S NH G VP
Sbjct: 253 SNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 334 LNNLERLRILDISENRLSG--PIASSLNLSSVEHLSLQKNALNGLIPGELFR-SCKLVTL 390
+ L L +S N SG P+ + L + ++ L L N +G +P L S L+TL
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 391 NLRDNTFSGRIPHQI--NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 448
+L N FSG I + N + L+ L L N G IP L +L + LS N SG+
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 449 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKR 508
IP ++ SKL +L WL+ LE
Sbjct: 431 IPSSLGSL-------------SKLRDLKL-----------------------WLNMLEGE 454
Query: 509 AAID-------ERVEIEFAMKNRYEIYNG-SNVNRVTGLDLSCNQLTGEIPSDIGQLQAI 560
+ E + ++F EI +G SN + + LS N+LTGEIP IG+L+ +
Sbjct: 455 IPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 561 LAXXXXXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQL 602
G+IP + + + LD++ N G IP +
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 368 LQKNALNGLIPGELFR-SCKLVTLNLRDNTFSGRIPH--QINEHSNLRFLLLGGNHLQ-- 422
L + +NG + G F+ S L +L+L N+ SG + + S L+FL + N L
Sbjct: 81 LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 423 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD-------VLNGSKLNSP 475
G + L +L L ++DLS N SG ANV+ W V SD ++G+K+ S
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISG------ANVVGW-VLSDGCGELKHLAISGNKI-SG 189
Query: 476 ELDEE----IEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531
++D +EF + +N S T SAL+ ++ +F+ S
Sbjct: 190 DVDVSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRAI-------S 241
Query: 532 NVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSN-LKMIESLDIS 590
+ L++S NQ G IP L+++ G IP+ S + LD+S
Sbjct: 242 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623
N G +PP + + L +S NN SG P
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 130/319 (40%), Gaps = 84/319 (26%)
Query: 330 VPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKL 387
+P L NL L L I N L GPI ++ L+ + +L + ++G IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL-AMMDLSRNKFS 446
VTL+ N SG +P I+ NL + GN + G IPD KL M +SRN+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 447 GSIPPCFANV-LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSAL 505
G IPP FAN+ L++ S ++L G D + FGS N + + L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEG--------DASVLFGSDKNTQKIH-----------L 228
Query: 506 EKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILAXXX 565
K + + ++ + N+N GLDL N++
Sbjct: 229 AKNSLAFDLGKVGLS----------KNLN---GLDLRNNRI------------------- 256
Query: 566 XXXXXXGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 625
G++P+ + LK + SL++S+N L G+I P
Sbjct: 257 -----YGTLPQGLTQLKFLHSLNVSFNNLCGEI------------------------PQG 287
Query: 626 GQFATFDESSYRGNPSLCA 644
G FD S+Y N LC
Sbjct: 288 GNLQRFDVSAYANNKCLCG 306
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 110/253 (43%), Gaps = 15/253 (5%)
Query: 49 LDLSHNNFEGMFPL-SSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLN 107
LDLS N +P+ SSLAN L L + NN + +QL L +T N++
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 108 GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHD 167
G+ PDFL L LD S+N L G P + + P L + N SG +P +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG--AIPDSYGS 171
Query: 168 F---LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLS 224
F + IS N GK+P + L ++D+S+N EG+ G K + L+
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 225 RNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG 284
+N + L + ++ +L LDL NN G L L L NN G+I G
Sbjct: 230 KNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 285 LLSSTSLQVLDIS 297
+LQ D+S
Sbjct: 288 ----GNLQRFDVS 296
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 102/230 (44%), Gaps = 32/230 (13%)
Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------- 303
NN G LT+L +LY + N SG I D L +L LD S N LSG
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 304 -----------------HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 346
IP G+FS +++S+N L G +P NL L +D+S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 347 ENRLSGPIASSLNLS--SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 404
N L G AS L S + + + L KN+L G++ S L L+LR+N G +P
Sbjct: 206 RNMLEGD-ASVLFGSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 405 INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK-FSGS-IPPC 452
+ + L L + N+L G IP Q LQ+ + + NK GS +P C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 123/491 (25%), Positives = 185/491 (37%), Gaps = 120/491 (24%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN----- 55
+N+ +N+I + + +L++L+IL IS N++ SV LEYLDLSHN
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 56 ----------------FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQ---- 95
F+ + N S+L+ L LST H++ + LP +
Sbjct: 86 CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT----HLEKSSVLPIAHLNIS 141
Query: 96 --LIVLGLT---KCNLNGSYPDFLLHQYHLKY-------------------LDLSHNKLV 131
L+VLG T K + G DF H+ + L+LS+ K V
Sbjct: 142 KVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 132 ------GNFPTWL--LRNNPKLEVLLLKN-----NSFSGILQLPKAKHDFLHHLDISCNN 178
F + L L+ NPKL L L N NSF ILQL H + + IS
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYFSISNVK 258
Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238
+G+L + YS +K LS+ + + F G QS +
Sbjct: 259 LQGQLDFR--------------------DFDYSGTSLKALSIHQVVSDVF--GFPQSYIY 296
Query: 239 GCFS-------------------------LELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 273
FS LD SNN F +LT L L +
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 274 NNNFS--GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 331
N KI + SLQ LDIS N +S +++ L L+MS N L +
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
Query: 332 VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 391
L R+++LD+ N++ + L +++ L++ N L + G R L +
Sbjct: 417 RCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474
Query: 392 LRDNTFSGRIP 402
L N + P
Sbjct: 475 LHTNPWDCSCP 485
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 304 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNL-SS 362
H+P + S + IL++S+N++ + +L +LRIL IS NR+ S
Sbjct: 14 HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70
Query: 363 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG-RIPHQINEHSNLRFLLLGGNHL 421
+E+L L N L+ + L L+L N F I + S L+FL L HL
Sbjct: 71 LEYLDLSHNK---LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 422 Q 422
+
Sbjct: 128 E 128
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNN 299
S L+ + N F F L RL+ L + N K L++ +SL+ LD+S N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLN 359
L+ H ++ + +L++S N L G+V L ++++LD+ NR+ +
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTH 471
Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP------HQINEHSNL 411
L +++ L++ N L + G R L + L DN + P IN+HS +
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 196 YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF-SLELLDLSNNNFE 254
+++ ++N F ++ +K L L L RN +++T SLE LD+S N+
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 255 GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 314
H Y + + S+ VL++S+NML+G +
Sbjct: 417 S-------------HAYDRTCAW----------AESILVLNLSSNMLTGSV---FRCLPP 450
Query: 315 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNAL 373
++++L + N + +P + +L+ L+ L+++ N+L S P L+S++++ L N
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 374 NGLIPG 379
+ PG
Sbjct: 510 DCTCPG 515
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL---NLSSVEHLSLQK 370
S L+ ++N +V + L+RL+ L + N L +L N+SS+E L +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 371 NALNGLIPGELFRSCK----LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP 426
N+LN R+C ++ LNL N +G + + ++ L L N + IP
Sbjct: 413 NSLNS---HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IP 466
Query: 427 DQLCQLQKLAMMDLSRNKFSGSIP 450
+ LQ L ++++ N+ S+P
Sbjct: 467 KDVTHLQALQELNVASNQLK-SVP 489
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 151/331 (45%), Gaps = 33/331 (9%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
+NL+++ + + TR++ LD+++ LNG LPS I + SL+ L L+ N+F+ +
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLC 316
Query: 61 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ--Y 118
+++ A+ L L + L + T L L L+ ++ S L +
Sbjct: 317 QINA-ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLR 375
Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178
HL+YL+LS+N+ +G + P+LE+L D++ +
Sbjct: 376 HLQYLNLSYNEPLG-LEDQAFKECPQLELL------------------------DVAFTH 410
Query: 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYF-SGGLSQS-V 236
K PH+ L L +++S + + + +++L L+L N F G +S++ +
Sbjct: 411 LHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNL 470
Query: 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296
+ SLE+L LS+ N + L + HL +N+ +G D L L L++
Sbjct: 471 LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNM 529
Query: 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLE 327
++N + PH + S + I+++S N L+
Sbjct: 530 ASNNIRIIPPHLLPALSQQ-SIINLSHNPLD 559
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 150/377 (39%), Gaps = 71/377 (18%)
Query: 89 NWLPTSQ---------LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLL 139
N+LPT Q LI L LT+C +N + D + L + L+ N L+ T L
Sbjct: 42 NFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSL- 100
Query: 140 RNNPK-LEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG-KLPHNMGVILQKLMYM 197
PK L+ L L S + +P + L L + N+ LP N Q L +
Sbjct: 101 -TGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT--QNLKVL 157
Query: 198 DISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 257
D N +++ + L L+ F+G + + G F ++ F+
Sbjct: 158 DFQNNAIHYISRKDTNSLEQATNLSLN---FNGNDIKGIEPGAFISKI-------FQSLK 207
Query: 258 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELE 317
F +NL + F G L +++LQ L W+G F + +
Sbjct: 208 FGGSLNLFII---------FKG------LQNSTLQSL-------------WLGTF-EDTD 238
Query: 318 ILSMSKNHLEG--NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG 375
++ EG ++ V+ NL++ R D+S + + V+ L L LNG
Sbjct: 239 DQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRC-------FTRVQELDLTAAHLNG 291
Query: 376 LIPG-ELFRSCKLVTLNLRDNTFSGRIPHQINEHS--NLRFLLLGGNHLQGPIPDQ-LCQ 431
L G E S K + LN N+F QIN S +LR L + GN + + + L +
Sbjct: 292 LPSGIEGMNSLKKLVLNA--NSFDQLC--QINAASFPSLRDLYIKGNMRKLDLGTRCLEK 347
Query: 432 LQKLAMMDLSRNKFSGS 448
L+ L +DLS + S
Sbjct: 348 LENLQKLDLSHSDIEAS 364
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 129/289 (44%), Gaps = 50/289 (17%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + PL +L N ++LE
Sbjct: 82 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 139
Query: 73 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
LS+ N + + L + Q + G +L L + L+ LD+S NK+
Sbjct: 140 ---LSS-NTISDISALSGLTSLQQLSFGNQVTDLKP-----LANLTTLERLDISSNKVSD 190
Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI- 190
L N LE L+ NN S I L L +LD +S N G ++G +
Sbjct: 191 ISVLAKLTN---LESLIATNNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLA 239
Query: 191 -LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
L L +D++ N P S + +L+ L L N S + S + G +L L+L+
Sbjct: 240 SLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELN 294
Query: 250 NNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
N E + + Y N LT+L+ L+F NN S
Sbjct: 295 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS 343
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 12 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 71
L CL N++ ++ ++ ++ S ++L+L + F G FP L + +L
Sbjct: 301 LFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRL 354
Query: 72 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 131
T N + +E LP+ + + L + G LKYLDLS N ++
Sbjct: 355 TF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410
Query: 132 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 191
+++F G+ QL HLD +N + ++ + L
Sbjct: 411 T------------------MSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVFLSL 444
Query: 192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251
+ L+Y+DIS + L +L ++ N F + T +L LDLS
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 252 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311
E + + +L+ L+ L +NNF SLQVLD S N + + +
Sbjct: 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564
Query: 312 FSSELEILSMSKN 324
F S L L++++N
Sbjct: 565 FPSSLAFLNLTQN 577
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
Query: 316 LEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 373
LE L +S+N L +G L+ LD+S N + ++ L L +EHL Q + L
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 374 NGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQ 431
+ +F S + L+ L++ N S+L L + GN Q +PD +
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 432 LQKLAMMDLSRNKFSGSIPPCFANVLSWRV 461
L+ L +DLS+ + P F ++ S +V
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 108/259 (41%), Gaps = 21/259 (8%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN--NFEGMFPLSSLANHSKLEGLLL 76
L LK L +SN+ + V +L SLE+LDLS N +F+G S S L+ L L
Sbjct: 348 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDL 404
Query: 77 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFP 135
S N + + N+L QL L NL S L +L YLD+SH F
Sbjct: 405 SF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF- 461
Query: 136 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVILQK 193
+ LEVL + NSF LP + L LD+S P L
Sbjct: 462 NGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSS 519
Query: 194 LMYMDISKNCFEG--NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251
L +++S N F PY + L +LD S N+ Q + SL L+L+ N
Sbjct: 520 LQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Query: 252 NF----EGQFFSEYMNLTR 266
+F E Q F +++ R
Sbjct: 578 DFACTCEHQSFLQWIKDQR 596
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM-- 59
+ + NF+ + T L+NLT LD+S QL P+ ++L+SL+ L++SHNNF +
Sbjct: 480 SFQENFLPD-IFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535
Query: 60 FPLSSL 65
FP L
Sbjct: 536 FPYKCL 541
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMF 60
+L LK L+++ N + LP SNLT+LE+LDLS N + ++
Sbjct: 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 131/295 (44%), Gaps = 62/295 (21%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + PL +L N ++LE
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 73 GLLLSTRNNTLHVKTENWLPTSQLIVL-GLT---KCNLNGSYPDF--LLHQYHLKYLDLS 126
LS+ NT+ S + L GLT + N D L + L+ LD+S
Sbjct: 136 ---LSS--NTI----------SDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDIS 180
Query: 127 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPH 185
NK+ L N LE L+ NN S I L L +LD +S N G
Sbjct: 181 SNKVSDISVLAKLTN---LESLIATNNQISDITPL-----GILTNLDELSLN---GNQLK 229
Query: 186 NMGVI--LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 243
++G + L L +D++ N P S + +L+ L L N S + S + G +L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTAL 284
Query: 244 ELLDLSNNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
L+L+ N E + + Y N LT+L+ L+F NN S
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVS 339
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 36/237 (15%)
Query: 170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN--Y 227
HL++ F G+ P + L+ L + + N +G +S ++ L LDLSRN
Sbjct: 307 QHLELVNCKF-GQFP---TLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 228 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLL 286
F G SQS G SL+ LDLS N S ++ L +L HL F+++N + L
Sbjct: 361 FKGCCSQSDF-GTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 287 SSTSLQVLDIS------------NNMLSGHIPHWMGNFSSE------------LEILSMS 322
S +L LDIS N + S + GN E L L +S
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 323 KNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNALNGLIP 378
+ LE P N+L L++L+++ N+L S P L+S++ + L N + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 114/483 (23%), Positives = 189/483 (39%), Gaps = 79/483 (16%)
Query: 21 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GMFP-LSSLANHSKLEGLL 75
L++LD+S ++ +L+ L L L+ N + G F LSSL +E L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 76 LSTRNNTL-HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF 134
S N + H+KT L + ++ P++ + +L++LDLS NK+ +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 135 PTWL--LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 192
T L L P L + L + + +Q K LH L + NNF
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR-NNFDS----------- 213
Query: 193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 252
+++ K C +G + E+ L L + +S + G L +L+
Sbjct: 214 ----LNVMKTCIQG---LAGLEVHRLVLGEFRNEGNLEKFDKSALEG-----LCNLTIEE 261
Query: 253 FEGQFFSEYM-NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM----------L 301
F + Y+ ++ L + ++FS L+S T +V D S N
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFS------LVSVTIERVKDFSYNFGWQHLELVNCK 315
Query: 302 SGHIPHWM--------------GNFSSE-----LEILSMSKNHL--EGNVPVQLNNLERL 340
G P GN SE LE L +S+N L +G L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSG 399
+ LD+S N + ++ L L +EHL Q + L + +F S + L+ L++
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 400 RIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 458
N S+L L + GN Q +PD +L+ L +DLS+ + P F ++ S
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 459 WRV 461
+V
Sbjct: 496 LQV 498
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMF 60
+L LK L+++ N + LP SNLT+LE+LDLS N + ++
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 50/289 (17%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + PL +L N ++LE
Sbjct: 83 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140
Query: 73 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
LS+ N + + L + Q + G +L L + L+ LD+S NK+
Sbjct: 141 ---LSS-NTISDISALSGLTSLQQLSFGNQVTDLKP-----LANLTTLERLDISSNKVSD 191
Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI- 190
+L LE L+ NN S I L L +LD +S N G ++G +
Sbjct: 192 ---ISVLAKLTNLESLIATNNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLA 240
Query: 191 -LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
L L +D++ N P S + +L+ L L N S + S + G +L L+L+
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELN 295
Query: 250 NNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
N E + + Y N LT+L+ L+F NN S
Sbjct: 296 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 131/295 (44%), Gaps = 62/295 (21%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + PL +L N ++LE
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 73 GLLLSTRNNTLHVKTENWLPTSQLIVL-GLT---KCNLNGSYPDF--LLHQYHLKYLDLS 126
LS+ NT+ S + L GLT + N D L + L+ LD+S
Sbjct: 136 ---LSS--NTI----------SDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDIS 180
Query: 127 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPH 185
NK+ L N LE L+ NN S I L L +LD +S N G
Sbjct: 181 SNKVSDISVLAKLTN---LESLIATNNQISDITPL-----GILTNLDELSLN---GNQLK 229
Query: 186 NMGVI--LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 243
++G + L L +D++ N P S + +L+ L L N S + S + G +L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTAL 284
Query: 244 ELLDLSNNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
L+L+ N E + + Y N LT+L+ L+F NN S
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 339
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 36/313 (11%)
Query: 12 LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKL 71
L CL N++ ++ ++ ++ S ++L+L + F G FP L + +L
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRL 330
Query: 72 EGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLV 131
T N + +E LP+ + + L + G LKYLDLS N ++
Sbjct: 331 TF----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 132 GNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 191
+++F G+ QL HLD +N + ++ + L
Sbjct: 387 T------------------MSSNFLGLEQL--------EHLDFQHSNLKQMSEFSVFLSL 420
Query: 192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251
+ L+Y+DIS + L +L ++ N F + T +L LDLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 252 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311
E + + +L+ L+ L +NNF SLQVLD S N + + +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 312 FSSELEILSMSKN 324
F S L L++++N
Sbjct: 541 FPSSLAFLNLTQN 553
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM-- 59
+ + NF+ + T L+NLT LD+S QL P+ ++L+SL+ L++SHNNF +
Sbjct: 456 SFQENFLPD-IFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
Query: 60 FPLSSL 65
FP L
Sbjct: 512 FPYKCL 517
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN--NFEGMFPLSSLANHSKLEGLLL 76
L LK L +SN+ + V +L SLE+LDLS N +F+G S S L+ L L
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDL 380
Query: 77 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFP 135
S N + + N+L QL L NL S L +L YLD+SH F
Sbjct: 381 SF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF- 437
Query: 136 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDISCNNFRGKLPHNMGVILQK 193
+ LEVL + NSF LP + L LD+S P L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSS 495
Query: 194 LMYMDISKNCFEG--NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251
L +++S N F PY + L +LD S N+ Q + SL L+L+ N
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 252 NF 253
+F
Sbjct: 554 DF 555
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMF 60
+L LK L+++ N + LP SNLT+LE+LDLS N + ++
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 115/485 (23%), Positives = 190/485 (39%), Gaps = 83/485 (17%)
Query: 21 RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFE----GMFP-LSSLANHSKLEGLL 75
L++LD+S ++ +L+ L L L+ N + G F LSSL +E L
Sbjct: 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 76 LSTRNNTL-HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF 134
S N + H+KT L + ++ P++ + +L++LDLS NK+ +
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 135 PTWL--LRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQ 192
T L L P L + L + + +Q K LH L + NNF + M +Q
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR-NNFDSL--NVMKTCIQ 222
Query: 193 KLMYMDI-----------------SKNCFEGNIPYSAGEMKELSLLDLSR-------NYF 228
L +++ K+ EG + E + L+ LD N
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR-LAYLDYYLDDIIDLFNCL 281
Query: 229 SGGLSQSVVTGC----------FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 278
+ S S+V+ F + L+L N F GQF + L L+ L F +N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF-GQF--PTLKLKSLKRLTFTSNKGG 338
Query: 279 GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 338
+ + SL+ LD+S N LS +F +
Sbjct: 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT-----------------------T 373
Query: 339 RLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTF 397
L+ LD+S N + ++ L L +EHL Q + L + +F S + L+ L++
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 398 SGRIPHQINEHSNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 456
N S+L L + GN Q +PD +L+ L +DLS+ + P F ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 457 LSWRV 461
S +V
Sbjct: 494 SSLQV 498
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 129/289 (44%), Gaps = 49/289 (16%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + PL +L N ++LE
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 73 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
LS+ N + + L + L L + + P L + L+ LD+S NK+
Sbjct: 136 ---LSS-NTISDISALSGL--TSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD 187
Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI- 190
L N LE L+ NN S I L L +LD +S N G ++G +
Sbjct: 188 ISVLAKLTN---LESLIATNNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLA 236
Query: 191 -LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
L L +D++ N P S + +L+ L L N S + S + G +L L+L+
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELN 291
Query: 250 NNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
N E + + Y N LT+L+ L+F NN S
Sbjct: 292 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVS 340
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 49/289 (16%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + PL +L N ++LE
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 73 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
LS+ N + + L + Q L + + P L + L+ LD+S NK+
Sbjct: 136 ---LSS-NTISDISALSGLTSLQ--QLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD 187
Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI- 190
+L LE L+ NN S I L L +LD +S N G ++G +
Sbjct: 188 ---ISVLAKLTNLESLIATNNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLA 236
Query: 191 -LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
L L +D++ N P S + +L+ L L N S + S + G +L L+L+
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELN 291
Query: 250 NNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
N E + + Y N LT+L+ L+F NN S
Sbjct: 292 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 129/289 (44%), Gaps = 49/289 (16%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT LKNLT+L + +++NQ+ P ++NLT+L L L +N + PL +L N ++LE
Sbjct: 78 ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 135
Query: 73 GLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG 132
LS+ N + + L + Q L + + P L + L+ LD+S NK+
Sbjct: 136 ---LSS-NTISDISALSGLTSLQ--QLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD 187
Query: 133 NFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD-ISCNNFRGKLPHNMGVI- 190
L N LE L+ NN S I L L +LD +S N G ++G +
Sbjct: 188 ISVLAKLTN---LESLIATNNQISDITPL-----GILTNLDELSLN---GNQLKDIGTLA 236
Query: 191 -LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249
L L +D++ N P S + +L+ L L N S + S + G +L L+L+
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQIS---NISPLAGLTALTNLELN 291
Query: 250 NNNFEG----------QFFSEYMN----------LTRLRHLYFENNNFS 278
N E + + Y N LT+L+ L+F NN S
Sbjct: 292 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 340
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 30/207 (14%)
Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
LKYLDLS N ++ +++F G+ QL HLD +N
Sbjct: 80 LKYLDLSFNGVIT------------------MSSNFLGLEQL--------EHLDFQHSNL 113
Query: 180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA--GEMKELSLLDLSRNYFSGGLSQSVV 237
+ ++ + L+ L+Y+DIS + ++ + L +L ++ N F +
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171
Query: 238 TGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
T +L LDLS E + + +L+ L+ L +NNF SLQVLD S
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231
Query: 298 NNMLSGHIPHWMGNFSSELEILSMSKN 324
N + + +F S L L++++N
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHL--EGNVPVQLNNLERLRILDISENRLS 351
L++ +N L +PH + + ++L LS+S N L +G L+ LD+S N +
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK-LVTLNLRDNTFSGRIPHQINEHSN 410
++ L L +EHL Q + L + +F S + L+ L++ N S+
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 411 LRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 461
L L + GN Q +PD +L+ L +DLS+ + P F ++ S +V
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM-- 59
+ + NF+ + T L+NLT LD+S QL P+ ++L+SL+ L++SHNNF +
Sbjct: 161 SFQENFLPD-IFTELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 60 FPLSSL 65
FP L
Sbjct: 217 FPYKCL 222
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79
T LK LD+S N + ++ S L LE+LD H+N + M S + LS R
Sbjct: 78 TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS----------VFLSLR 126
Query: 80 N----NTLHVKTE-------NWLPTSQLIVLGLTKCNLNGSY-PDFLLHQYHLKYLDLSH 127
N + H T N L S L VL + + ++ PD +L +LDLS
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 128 NKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNM 187
+L PT + L+VL + +N+F + P + L LD S N+ +
Sbjct: 185 CQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 188 GVILQKLMYMDISKNCFEGNIPYSA 212
L ++++++N F + +
Sbjct: 244 QHFPSSLAFLNLTQNDFACTCEHQS 268
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 99/260 (38%), Gaps = 39/260 (15%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLN--GSLPSVISNLTSLEYLDLSHNNFEG 58
+ LE N + S LT+L L +SSN L+ G TSL+YLDLS F G
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNG 89
Query: 59 MFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQ 117
+ +SS N+L QL L NL S L
Sbjct: 90 VITMSS------------------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 118 YHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF--LHHLDIS 175
+L YLD+SH F + LEVL + NSF LP + L LD+S
Sbjct: 126 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLS 183
Query: 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEG--NIPYSAGEMKELSLLDLSRNYFSGGLS 233
P L L +++S N F PY + L +LD S N+
Sbjct: 184 QCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKK 240
Query: 234 QSVVTGCFSLELLDLSNNNF 253
Q + SL L+L+ N+F
Sbjct: 241 QELQHFPSSLAFLNLTQNDF 260
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 39/222 (17%)
Query: 113 FLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 172
F H L++LDLS N +V + LKN++ G P L L
Sbjct: 355 FSQHLKSLEFLDLSENLMVEEY---------------LKNSACKG--AWPS-----LQTL 392
Query: 173 DISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 231
+S N+ R + + + L+ L +DIS+N F +P S +++ L+LS S G
Sbjct: 393 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLS----STG 447
Query: 232 LSQSVVTGCF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST 289
+ VV C +LE+LD+SNNN + FS + L RL+ LY N + D L
Sbjct: 448 IR--VVKTCIPQTLEVLDVSNNNLDS--FSLF--LPRLQELYISRNKLK-TLPDASLFPV 500
Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 331
L V+ I++N L +P + + + L+ + + N + + P
Sbjct: 501 -LLVMKIASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 540
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
+++ LDLS N + L+ L +++ + D S SL+ LD+S+N L
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 302 SGHIPHWMGNFSSELEILSMSKNHLE----GNVPVQLNNLERLRILDISE----NRLSGP 353
S W G SS L+ L++ N + ++ L NL+ LRI ++ R+
Sbjct: 113 SSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 171
Query: 354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 413
+SLN ++ LSL+ L + R +TL+L ++ F I I S++R+
Sbjct: 172 GLTSLNELEIKALSLRNYQSQSL---KSIRDIHHLTLHLSESAFLLEIFADI--LSSVRY 226
Query: 414 LLLGGNHLQ----GPIP-DQLCQ-LQKLAM 437
L L +L P+P D++ ++KLA
Sbjct: 227 LELRDTNLARFQFSPLPVDEVSSPMKKLAF 256
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 39/222 (17%)
Query: 113 FLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 172
F H L++LDLS N +V + LKN++ G P L L
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEY---------------LKNSACKG--AWPS-----LQTL 366
Query: 173 DISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG 231
+S N+ R + + + L+ L +DIS+N F +P S +++ L+LS S G
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLS----STG 421
Query: 232 LSQSVVTGCF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSST 289
+ VV C +LE+LD+SNNN + FS + L RL+ LY N + D L
Sbjct: 422 IR--VVKTCIPQTLEVLDVSNNNLDS--FSLF--LPRLQELYISRNKLK-TLPDASLFPV 474
Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 331
L V+ IS N L +P + + + L+ + + N + + P
Sbjct: 475 -LLVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNML 301
+++ LDLS N + L+ L +++ + D S SL+ LD+S+N L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 302 SGHIPHWMGNFSSELEILSMSKNHLE----GNVPVQLNNLERLRILDISE----NRLSGP 353
S W G SS L+ L++ N + ++ L NL+ LRI ++ R+
Sbjct: 87 SSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 413
+SLN ++ LSL+ L + R +TL+L ++ F I I S++R+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSL---KSIRDIHHLTLHLSESAFLLEIFADI--LSSVRY 200
Query: 414 LLLGGNHLQ----GPIP-DQLCQ-LQKLAM 437
L L +L P+P D++ ++KLA
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 105/243 (43%), Gaps = 26/243 (10%)
Query: 119 HLKYLDLSHNKL-VGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 177
H K+ LS + + FPT L P L+ L L N G + K L +LD+S N
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRN 360
Query: 178 --NFRGKLPH-NMGVILQKLMYMDISKNCFEGNIPYSAGEM--KELSLLDLSRNYFSGGL 232
+F G + ++G L ++D+S F G I SA M +EL LD +
Sbjct: 361 ALSFSGCCSYSDLGT--NSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415
Query: 233 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS----- 287
S L LD+S N + F ++ LT L L N+F KD LS
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF----KDNTLSNVFAN 471
Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
+T+L LD+S L I + + L++L+MS N+L N L L LD S
Sbjct: 472 TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 348 NRL 350
NR+
Sbjct: 531 NRI 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 105/243 (43%), Gaps = 26/243 (10%)
Query: 119 HLKYLDLSHNKL-VGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 177
H K+ LS + + FPT L P L+ L L N G + K L +LD+S N
Sbjct: 301 HFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRN 355
Query: 178 --NFRGKLPH-NMGVILQKLMYMDISKNCFEGNIPYSAGEM--KELSLLDLSRNYFSGGL 232
+F G + ++G L ++D+S F G I SA M +EL LD +
Sbjct: 356 ALSFSGCCSYSDLGT--NSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVT 410
Query: 233 SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS----- 287
S L LD+S N + F ++ LT L L N+F KD LS
Sbjct: 411 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF----KDNTLSNVFAN 466
Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347
+T+L LD+S L I + + L++L+MS N+L N L L LD S
Sbjct: 467 TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 525
Query: 348 NRL 350
NR+
Sbjct: 526 NRI 528
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 23/188 (12%)
Query: 280 KIKDGLLSSTSLQVLDISNNMLS-------GHIPHWMGNFSSELEILSMSKNHLEGNVPV 332
++ DG+ ST+ ++L++ N + H+ H LEIL +S+NH+
Sbjct: 57 EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRH--------LEILQLSRNHIRTIEIG 106
Query: 333 QLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELF-RSCKLVTL 390
N L L L++ +NRL+ P + + LS ++ L L+ N + IP F R L L
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRL 165
Query: 391 NLRDNTFSGRIPHQINEH-SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 449
+L + I E SNLR+L L +L+ IP+ L L KL +DLS N S
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIR 223
Query: 450 PPCFANVL 457
P F ++
Sbjct: 224 PGSFQGLM 231
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMF 60
+NL+ + T + T+L+ LD+++ L G LPS + L L+ L LS N+F+ +
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 61 PLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQ--Y 118
+S+ AN L L + LH+ L L L+ ++ S L +
Sbjct: 315 QISA-ANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLS 373
Query: 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDI 174
HL+ L+LSHN+ +G + + P+LE+L L +F+ + + P++ LH L +
Sbjct: 374 HLQTLNLSHNEPLG-LQSQAFKECPQLELLDL---AFTRLHINAPQSPFQNLHFLQV 426
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 17/223 (7%)
Query: 13 ITCLKNLTRLKILDISSNQLNGS--LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSK 70
+ CL+ L L+ LD+S N + S + NL+ L+ L+LSHN G+ + +
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS-QAFKECPQ 398
Query: 71 LEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL 130
LE L L+ ++ + L VL LT C L+ S L L++L+L N
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 131 VGN--FPTWLLRNNPKLEVLLLKNNSFSGILQ-----LPKAKHDFLHHLDISCNNFRGKL 183
T LL+ LEVL+L + I Q L K H L H ++C++ L
Sbjct: 459 QDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSI-DSL 517
Query: 184 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 226
H G+ Y++++ N P + + S ++LS N
Sbjct: 518 SHLKGI------YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 125/306 (40%), Gaps = 58/306 (18%)
Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
L+ LDL+ L G P+ + N L+ L+L N F + Q+ A L HL I N
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLN-LLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN-- 332
Query: 180 RGKLPHNMGVI--LQKLMYMDISKNCFEGN--IPYSAGEMKELSLLDLSRNYFSGGLSQS 235
KL +G + L L +D+S N E + + L L+LS N GL
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE-PLGLQSQ 391
Query: 236 VVTGCFSLELLDLS---------NNNFEGQFFSEYMNLTR----------------LRHL 270
C LELLDL+ + F+ F + +NLT LRHL
Sbjct: 392 AFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHL 451
Query: 271 YFENNNFSGKIKDGLLSSTSL-QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 329
+ N+F +DG ++ T+L Q + LE+L +S L
Sbjct: 452 NLKGNHF----QDGTITKTNLLQTV-------------------GSLEVLILSSCGLLSI 488
Query: 330 VPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVT 389
++L ++ +D+S N L+ SL+ +L+L N++N + P L + T
Sbjct: 489 DQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQST 548
Query: 390 LNLRDN 395
+NL N
Sbjct: 549 INLSHN 554
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 97/226 (42%), Gaps = 55/226 (24%)
Query: 9 GSPLITCLKN-LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLAN 67
G +++C N L IL S QL ++P + + T+L LDLSHNN + +
Sbjct: 6 GRSVVSCPANCLCASNILSCSKQQL-PNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTR 62
Query: 68 HSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSH 127
+ L LLLS N+ + +E ++P +L+YLDLS
Sbjct: 63 LTNLHSLLLS-HNHLNFISSEAFVPVP------------------------NLRYLDLSS 97
Query: 128 NKLVGNFPTWLLRNNPKLEVLLLKN--------NSFSGILQLPKAKHDFLHHLDISCNNF 179
N L +L + LEVLLL N N+F + QL K +L IS F
Sbjct: 98 NHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL---YLSQNQIS--RF 151
Query: 180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR 225
+L + G L KLM +D+S N ++K+L L DL +
Sbjct: 152 PVELIKD-GNKLPKLMLLDLSSN-----------KLKKLPLTDLQK 185
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 207 NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTR 266
N+P S +LLDLS N S ++ T +L L LS+N+ ++ +
Sbjct: 32 NVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 267 LRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 325
LR+L +N+ + + L S +L+VL + NN + + + ++L+ L +S+N
Sbjct: 90 LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQ 147
Query: 326 LEGNVPVQL----NNLERLRILDISENRL 350
+ PV+L N L +L +LD+S N+L
Sbjct: 148 I-SRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 138/338 (40%), Gaps = 52/338 (15%)
Query: 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG-----NIPYSAGEMKELSLLDL 223
L HL++ N+ G + NM L L Y+ +S N F N + + L +L+L
Sbjct: 331 LEHLNMEDNDIPG-IKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNL 388
Query: 224 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS--EYMNLTRLRHLYFENNNFSGKI 281
++N S + + LE+LDL N GQ + E+ L + +Y N +
Sbjct: 389 TKNKISK-IESDAFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 282 KDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLNNLER 339
++ SLQ L + L + F L IL +S N++ L LE+
Sbjct: 447 RNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 340 LRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGLIPGELFR---SCKL 387
L ILD+ N L+ GPI LS + L+L+ N + IP E+F+ K+
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKI 564
Query: 388 VTLNLRD-NTFSGRIPHQINEHSNLRFLLLGGNHLQ-------GPIPDQLCQLQKLAMMD 439
+ L L + NT + N +L+ L L N + GP + L +D
Sbjct: 565 IDLGLNNLNTLPASV---FNNQVSLKSLNLQKNLITSVEKKVFGP------AFRNLTELD 615
Query: 440 LSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 477
+ N F C ++W V + +N + N PEL
Sbjct: 616 MRFNPFD-----CTCESIAWFV---NWINETHTNIPEL 645
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 54
+NLE N + K+L LKI+D+ N LN SV +N SL+ L+L N
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 140/342 (40%), Gaps = 60/342 (17%)
Query: 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG-----NIPYSAGEMKELSLLDL 223
L HL++ N+ G + NM L L Y+ +S N F N + + L +L+L
Sbjct: 336 LEHLNMEDNDIPG-IKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNL 393
Query: 224 SRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFS--EYMNLTRLRHLYFENNNF 277
++N S + + FS LE+LDL N GQ + E+ L + +Y N +
Sbjct: 394 TKNKIS-----KIESDAFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKY 447
Query: 278 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLN 335
++ SLQ L + L + F L IL +S N++ L
Sbjct: 448 LQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 506
Query: 336 NLERLRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGLIPGELFR--- 383
LE+L ILD+ N L+ GPI LS + L+L+ N + IP E+F+
Sbjct: 507 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLF 565
Query: 384 SCKLVTLNLRD-NTFSGRIPHQINEHSNLRFLLLGGNHLQ-------GPIPDQLCQLQKL 435
K++ L L + NT + N +L+ L L N + GP + L
Sbjct: 566 ELKIIDLGLNNLNTLPASV---FNNQVSLKSLNLQKNLITSVEKKVFGP------AFRNL 616
Query: 436 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 477
+D+ N F C ++W V + +N + N PEL
Sbjct: 617 TELDMRFNPFD-----CTCESIAWFV---NWINETHTNIPEL 650
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 54
+NLE N + K+L LKI+D+ N LN SV +N SL+ L+L N
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 124/290 (42%), Gaps = 26/290 (8%)
Query: 120 LKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179
L+ LDL+ L P+ L+ L+ L+L N F + Q+ + L HL I N
Sbjct: 280 LQELDLTATHL-SELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 180 RGKLPHNMGVILQKLMYMDISKNCFEGN--IPYSAGEMKELSLLDLSRNYFSGGLSQSVV 237
R +L L+ L +D+S + E + + L L+LS N L
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAF 396
Query: 238 TGCFSLELLDLSNNNFEGQ-FFSEYMNLTRLRHLYFENNNF---SGKIKDGLLSSTSLQV 293
C LELLDL+ + + S + NL L+ L ++ S ++ DGL +LQ
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL---PALQH 453
Query: 294 LDISNNMLSGHIPHWMGNFSS--------ELEILSMSKNHLEGNVPVQLNNLERLRILDI 345
L++ N H P GN LEIL +S L +L+ + +D+
Sbjct: 454 LNLQGN----HFPK--GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 346 SENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 395
S NRL+ +L+ +L+L N ++ ++P L + T+NLR N
Sbjct: 508 SHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 141/342 (41%), Gaps = 60/342 (17%)
Query: 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG-----NIPYSAGEMKELSLLDL 223
L HL++ N+ G + NM L L Y+ +S N F N + + L +L+L
Sbjct: 341 LEHLNMEDNDIPG-IKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNL 398
Query: 224 SRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFS--EYMNLTRLRHLYFENNNF 277
++N S + + FS LE+LDL N GQ + E+ L + +Y N +
Sbjct: 399 TKNKIS-----KIESDAFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKY 452
Query: 278 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFS--SELEILSMSKNHLEGNVPVQLN 335
++ SLQ L + L ++ F L IL +S N++ L
Sbjct: 453 LQLTRNSFALVPSLQRLMLRRVALK-NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 511
Query: 336 NLERLRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGLIPGELFR--- 383
LE+L ILD+ N L+ GPI LS + L+L+ N + IP E+F+
Sbjct: 512 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLF 570
Query: 384 SCKLVTLNLRD-NTFSGRIPHQINEHSNLRFLLLGGNHLQ-------GPIPDQLCQLQKL 435
K++ L L + NT + N +L+ L L N + GP + L
Sbjct: 571 ELKIIDLGLNNLNTLPASV---FNNQVSLKSLNLQKNLITSVEKKVFGP------AFRNL 621
Query: 436 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPEL 477
+D+ N F C ++W V + +N + N PEL
Sbjct: 622 TELDMRFNPFD-----CTCESIAWFV---NWINETHTNIPEL 655
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 54
+NLE N + K+L LKI+D+ N LN SV +N SL+ L+L N
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 246 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGH 304
LDL N+ + + LT L LY N + +G+ + TSL L++S N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 305 IPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSV 363
+P+ + + ++L+ L+++ N L+ + L +L+ L + +N+L S P L+S+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 364 EHLSLQKNALNGLIPG 379
+++ L N + PG
Sbjct: 151 QYIWLHDNPWDCTCPG 166
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLAN 67
+T LKNLT++ L++S N L S I+ L S++ LDL+ + PL+ L+N
Sbjct: 84 LTPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSN 136
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
+T L L+ L++L + NQ+ P ++ LT+L+YL + +N + P LAN SKL
Sbjct: 128 VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP---LANLSKLT 182
Query: 73 GL 74
L
Sbjct: 183 TL 184
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 4/176 (2%)
Query: 269 HLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 327
L NN F+ G+ L+ ++ SNN ++ S EIL ++ N LE
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL-LTSNRLE 94
Query: 328 GNVPVQLNNLERLRILDISENRLSGPIASS-LNLSSVEHLSLQKNALNGLIPGELFRSCK 386
LE L+ L + NR++ S + LSSV LSL N + + PG
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 387 LVTLNLRDNTFSGRIPHQ-INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 441
L TLNL N F+ + E + ++ G Q P + +Q +A+ D +
Sbjct: 155 LSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFT 210
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 212 AGEMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEYMNLTRL 267
AG KEL +L + + Q++ G F L L L N + + +LT+L
Sbjct: 78 AGIFKELK--NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 268 RHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE 327
+L N K TSL+ L + NN L +P + +EL+ L + N L+
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194
Query: 328 GNVPVQLNNLERLRILDISEN 348
++LE+L++L + EN
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG- 352
+D S+ L+ IP N ++ + L + N L + L +LR+L +++N+L
Sbjct: 21 VDCSSKKLTA-IPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 353 PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLR 412
P L ++E L + N L L G + L L L N P + + L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 413 FLLLGGNHLQGPIP----DQLCQLQKLAM 437
+L LG N LQ +P D+L L++L +
Sbjct: 137 YLSLGYNELQS-LPKGVFDKLTSLKELRL 164
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 343 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 402
+D S +L+ I S++ + + L LQ N L+ L R KL L L DN
Sbjct: 21 VDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 403 HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP 451
E NL L + N LQ QL LA + L RN+ S+PP
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPP 126
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 203
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 126/344 (36%), Gaps = 65/344 (18%)
Query: 80 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSY--PDFLLHQYHLKYLDLSHNKLVGNFPTW 137
N L ++T + + L VL LT+CNL+G+ +F L+ L L N + P
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 138 LLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGK---LPHNMGVILQKL 194
N + VL L N I + D L NF+GK L + LQ +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSI-----CEEDLL--------NFQGKHFTLLRLSSITLQDM 195
Query: 195 -------------------MYMDISKNCFEGNIP---YSAGEMKELSLLDLSRNYFSG-- 230
+D+S N F+ ++ + A ++ L LS +Y G
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255
Query: 231 ---------------GLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 275
GL S V C DLS + S + + T L L N
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTC------DLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
Query: 276 NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 335
+ + T L L++S N L G I M +LE+L +S NH+
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368
Query: 336 NLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKNALNGLIP 378
L L+ L + N+L S P L+S++ + L N + P
Sbjct: 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 156/401 (38%), Gaps = 61/401 (15%)
Query: 93 TSQLIVLGLTKCNLNGSYPDFLLHQY-----HLKYLDLSHNKLVGNFPT--------WLL 139
TS+ V+G +N LHQ H+ Y+DLS N + T L
Sbjct: 5 TSECSVIGYNAICINRG-----LHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFL 59
Query: 140 RNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDI 199
+ + L+++NN+F G+ L K D+ L + F G N+ V+ L ++
Sbjct: 60 KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL--ANLEVL--TLTQCNL 115
Query: 200 SKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN-------- 251
GN + L +L L N S +LDL+ N
Sbjct: 116 DGAVLSGNF---FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
Query: 252 ---NFEGQFFSEYMNLTRLRHLYFENNN--FSGKIKDG-LLSSTSLQVLDISNNMLSGHI 305
NF+G+ F+ L RL + ++ N + G K G +TS+ LD+S N +
Sbjct: 173 DLLNFQGKHFT----LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228
Query: 306 PHWMGNFSSELEILSM----------SKNHLEGNVP--VQLNNLER--LRILDISENRLS 351
+ + +I S+ S H P LE ++ D+S++++
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288
Query: 352 GPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-S 409
+ S + + +E L+L +N +N + + L+ LNL N F G I ++ E+
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLD 347
Query: 410 NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 450
L L L NH++ L L + L N+ S+P
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVP 387
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 59
+NL +NF+GS +NL +L++LD+S N + L +L+ L L N + +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLAN 67
LKNLT++ L++S N L S I+ L S++ LDL+ + PL+ L+N
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 4 ERNFIGSPL--ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFP 61
E G+PL ++ + L +K LD++S Q+ P ++ L++L+ L L N + P
Sbjct: 89 ELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 146
Query: 62 LSSLAN 67
L+ L N
Sbjct: 147 LAGLTN 152
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNA 372
++L L++ N L+ ++L L L ++ N+L+ P+ +L+ ++ L L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 432
L L G R KL L L N ++ +NL+ L L N LQ +L
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 433 QKLAMMDLSRNKFSGS 448
KL + L N+F S
Sbjct: 179 GKLQTITLFGNQFDCS 194
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 220 LLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 275
L++L + YF+ ++ TG F L LDL++N+ + + NL L H+Y NN
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Query: 276 NFSGKIKD 283
+ + +D
Sbjct: 116 PWDCECRD 123
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNA 372
++L L++ N L+ ++L L L ++ N+L+ P+ +L+ ++ L L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL 432
L L G R KL L L N ++ +NL+ L L N LQ +L
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178
Query: 433 QKLAMMDLSRNKFSGS 448
KL + L N+F S
Sbjct: 179 GKLQTITLFGNQFDCS 194
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 274
+ +L+ L+L N LS V L L L+NN + +LT+L LY
Sbjct: 58 LTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 275 NNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQ 333
N + G+ T L+ L ++ N L IP + + L+ LS+S N L+
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 334 LNNLERLRILDISENRLSGPIASSLNLS 361
+ L +L+ + + N+ +L LS
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCETLYLS 202
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 149 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 206
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 206 GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFFSEY 261
GN + +KEL+ +L+ +G QS+ G F L+ L L N + +
Sbjct: 72 GNKLHDISALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 262 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 321
LT L +LY +N K T+L LD+ NN L +P + + ++L+ LS+
Sbjct: 130 DKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSL 188
Query: 322 SKNHLEGNVP 331
+ N L+ VP
Sbjct: 189 NDNQLKS-VP 197
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 147 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 204
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 112/277 (40%), Gaps = 33/277 (11%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN----- 55
+ L N + + NL L+ L + SN+L V + L++L LD+S N
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 56 ---FEGMFPLSSLA---------NHSKLEGL-----LLSTRNNTLHVKTENWLPTSQLIV 98
F+ ++ L SL +H GL L + N + TE LIV
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Query: 99 LGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNF-PTWLLRNNPKLEVLLLKNNSFSG 157
L L N+N Y LK L++SH + P L N L L + + + +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN--LTSLSITHCNLTA 238
Query: 158 ILQLPKAKHDFLHHLDISCN---NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGE 214
+ L +L L++S N G + H + + LQ++ + E PY+
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVE---PYAFRG 294
Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251
+ L +L++S N + L +SV +LE L L +N
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLA 66
I+ L NL++L L +++NQL VI LT+L L LS N+ + PL+SL+
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPLASLS 333
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN 54
I +K+LT+LK L++ SNQ+ S SV++NL+ L L L++N
Sbjct: 258 INAVKDLTKLKXLNVGSNQI--SDISVLNNLSQLNSLFLNNN 297
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 149 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 206
>pdb|4GY7|A Chain A, Crystallographic Structure Analysis Of Urease From Jack
Bean (Canavalia Ensiformis) At 1.49 A Resolution
Length = 840
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 504 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 553
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 167 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|4H9M|A Chain A, The First Jack Bean Urease (Canavalia Ensiformis) Complex
Obtained At 1.52 Resolution
Length = 840
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 504 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 553
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 113/517 (21%), Positives = 192/517 (37%), Gaps = 113/517 (21%)
Query: 16 LKNLTRLKILDISSNQLNGSLPSVIS--------------------------NLTSLEYL 49
+NL L+ILD+ S+++ P NL +L L
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128
Query: 50 DLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGS 109
DLS N ++ S + L+ + S+ N + + E+ L Q L N
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSS--NQIFLVCEHELEPLQGKTLSFFSLAANSL 186
Query: 110 YPDFLL---------HQYHLKYLDLSHN----KLVGNFPTWLLRNNPKLEVLLLKNNSFS 156
Y + L+ LD+S N + GNF + K+ +FS
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN-----------AISKSQAFS 235
Query: 157 GIL--QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGE 214
IL + A F + D N F G+ + ++D+S
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTF-------AGLARSSVRHLDLSHGFVFSLNSRVFET 288
Query: 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFEN 274
+K+L +L+L+ N + ++ G +L++L+LS N + S + L ++ ++ +
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 275 NNFSGKIKDGLLSSTSLQVLDISNNMLSG--HIPHWMGNFSSELEILSMSKNHLEGN-VP 331
N+ + LQ LD+ +N L+ IP F S +++++ K +L N +
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407
Query: 332 VQLNNLE------------RLRILDISENRL---SGPIASSLN----------------- 359
+ N LE L+IL +++NR SG S N
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467
Query: 360 -----------LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 408
LS ++ L L N LN L PG L L+L N + + +
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLP 525
Query: 409 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 445
+NL L + N L P PD L+++D++ NKF
Sbjct: 526 ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLAN 67
L+ILDIS NQL P V SL LD++HN F LS+ N
Sbjct: 528 LEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFIN 570
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHN------ 54
++L F+ S + L LK+L+++ N++N L +L+ L+LS+N
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 55 --NFEGMFPLSSL---ANHSK---------LEGL-LLSTRNNTLHVKTENWLPTSQLIVL 99
NF G+ ++ + NH LE L L R+N L T +++P+ I L
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL--TTIHFIPSIPDIFL 388
Query: 100 G------LTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 153
L K NL + L+H LS N+L + L P L++L+L N
Sbjct: 389 SGNKLVTLPKINLTAN----LIH--------LSENRLENLDILYFLLRVPHLQILILNQN 436
Query: 154 SFS 156
FS
Sbjct: 437 RFS 439
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 167 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 167 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 224
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 504 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSD 553
A +AA+D+RV + + + R E SNV ++T LD+ N EI D
Sbjct: 763 AFVSKAALDQRVNVLYGLNKRVEAV--SNVRKLTKLDMKLNDALPEITVD 810
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMF 60
+L LK L+++ N + LP SNLT+LE+LDLS N + ++
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 18/230 (7%)
Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
K+P N+ + L D+S N YS EL +LDLSR Q++ G +
Sbjct: 23 KIPDNLPFSTKNL---DLSWNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAY 74
Query: 242 S----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
L L L+ N + + L+ L+ L N + + +L+ L+++
Sbjct: 75 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 134
Query: 298 NNML-SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI-- 354
+N++ S +P + N ++ LE L +S N ++ L L ++ +L++S + P+
Sbjct: 135 HNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 193
Query: 355 --ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 402
+ ++ L+L N L + G R L + L N + P
Sbjct: 194 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMF 60
+L LK L+++ N + LP SNLT+LE+LDLS N + ++
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 18/230 (7%)
Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
K+P N+ + L D+S N YS EL +LDLSR Q++ G +
Sbjct: 22 KIPDNLPFSTKNL---DLSWNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAY 73
Query: 242 S----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
L L L+ N + + L+ L+ L N + + +L+ L+++
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 133
Query: 298 NNML-SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI-- 354
+N++ S +P + N ++ LE L +S N ++ L L ++ +L++S + P+
Sbjct: 134 HNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 192
Query: 355 --ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 402
+ ++ L+L N L + G R L + L N + P
Sbjct: 193 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 169 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 226
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMF 60
+L LK L+++ N + LP SNLT+LE+LDLS N + ++
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 18/230 (7%)
Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
K+P N+ + L D+S N YS EL +LDLSR Q++ G +
Sbjct: 21 KIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAY 72
Query: 242 S----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
L L L+ N + + L+ L+ L N + + +L+ L+++
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 298 NNML-SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI-- 354
+N++ S +P + N ++ LE L +S N ++ L L ++ +L++S + P+
Sbjct: 133 HNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 355 --ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 402
+ ++ L+L N L + G R L + L N + P
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMF 60
+L LK L+++ N + LP SNLT+LE+LDLS N + ++
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 18/230 (7%)
Query: 182 KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF 241
K+P N+ + L D+S N YS EL +LDLSR Q++ G +
Sbjct: 22 KIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAY 73
Query: 242 S----LELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDIS 297
L L L+ N + + L+ L+ L N + + +L+ L+++
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 133
Query: 298 NNML-SGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI-- 354
+N++ S +P + N ++ LE L +S N ++ L L ++ +L++S + P+
Sbjct: 134 HNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 192
Query: 355 --ASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP 402
+ ++ L+L N L + G R L + L N + P
Sbjct: 193 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 39/123 (31%)
Query: 314 SELEILSMSKN----------HLEGN----VPVQLNNLERLRILDISENRLSGPIASSLN 359
S L+I ++S N +L GN +P ++ NL LR+LD+S NRL+
Sbjct: 232 SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS------- 284
Query: 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
+P EL +L DN + +P + NL+FL + GN
Sbjct: 285 -----------------LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Query: 420 HLQ 422
L+
Sbjct: 327 PLE 329
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 14/51 (27%)
Query: 18 NLTRLKILDISSN----------QLNG----SLPSVISNLTSLEYLDLSHN 54
+L+ L+I +IS+N LNG LP+ I NL++L LDLSHN
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN 280
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L+ L N LE
Sbjct: 144 ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 201
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 NLTRLKILDISSNQLNG-SLPSVISNLTSLEYLDLSHNNFEGMF 60
+L LK L+++ N + LP SNLT+LE+LDLS N + ++
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 325 HLEGN----VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPG 379
+L+GN VP +L+N + L ++D+S NR+S S N++ + L L N L IP
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPP 95
Query: 380 ELFRSCK-LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 421
F K L L+L N S N+ S L L +G N L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALN 374
LEIL +SKN + N L L L++ +NRL+ P + LS + L L+ N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 375 GLIPGELF-RSCKLVTLNL---------RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 424
IP F R L L+L + F G + NLR+L LG +L+
Sbjct: 121 S-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV--------NLRYLNLGMCNLKD- 170
Query: 425 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460
IP+ L L +L ++LS N+ P F + S R
Sbjct: 171 IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 296 ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA 355
IS++ L G +PH L L + +N L G P ++ L + EN++ I+
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94
Query: 356 SS--LNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTF 397
+ L L ++ L+L N ++ ++PG L +LNL N F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 43 LTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT 102
T+L+ L LSHN + PL L +KLE L ++ RN +K N +P++ L L L
Sbjct: 62 FTNLKELHLSHNQISDLSPLKDL---TKLEELSVN-RN---RLKNLNGIPSACLSRLFLD 114
Query: 103 KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS---GIL 159
L + D L+H +L+ L + +NKL L KLEVL L N + G+
Sbjct: 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLS---KLEVLDLHGNEITNTGGLT 169
Query: 160 QLPKA 164
+L K
Sbjct: 170 RLKKV 174
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSG-PIASSLNLSSVEHLSLQKNALN 374
LEIL +SKN + N L L L++ +NRL+ P + LS + L L+ N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 375 GLIPGELF-RSCKLVTLNL---------RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 424
IP F R L L+L + F G + NLR+L LG +L+
Sbjct: 121 S-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV--------NLRYLNLGMCNLKD- 170
Query: 425 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460
IP+ L L +L ++LS N+ P F + S R
Sbjct: 171 IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ+ +P ++ LT L+ L LS N+ + L L N LE
Sbjct: 147 ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISDLRALRGLKNLDVLE 204
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 350 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 384
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 49/224 (21%)
Query: 116 HQYHLKYLDLSHNKLVGNFPTWLLRNN------PKLEVLLLKNNSFSGILQLPKAKHDFL 169
H L+YLDLS N +V + L+N+ P L+ L+L+ N + L K L
Sbjct: 332 HLKSLEYLDLSENLMVEEY----LKNSACEDAWPSLQTLILRQNHLAS---LEKTGETLL 384
Query: 170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS 229
L+ L +DISKN F +P + +++ L+LS
Sbjct: 385 --------------------TLKNLTNIDISKNSFHS-MPETCQWPEKMKYLNLSSTRIH 423
Query: 230 GGLSQSVVTGCF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLS 287
VTGC +LE+LD+SNN +NL +L+ LY N LL
Sbjct: 424 S------VTGCIPKTLEILDVSNN----NLNLFSLNLPQLKELYISRNKLMTLPDASLLP 473
Query: 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP 331
L VL IS N L +P + + + L+ + + N + + P
Sbjct: 474 --MLLVLKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYN--- 592
V LDLS N++T SD+ + + A +SFS+L +E LD+SYN
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 593 KLTGQIPPQLTALNFLSIFNVSYNNL 618
L+ L++L FL++ Y L
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTL 113
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 224 SRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKD 283
S N GL+++V + LDLSNN S+ L+ L +N + +D
Sbjct: 16 SLNSIPSGLTEAVKS-------LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 68
Query: 284 GLLSSTSLQVLDISNNMLSGHIPHWMGNFSS 314
S SL+ LD+S N LS W SS
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 350 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 384
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN 348
+S L++ +N L +PH + + ++L LS+S+N ++ + L +L IL + EN
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 349 RLSG-PIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPH 403
+L P L+ ++ L+L N L + G R L + L N + P
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 350 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 384
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLE 72
IT L LT+L L + NQ++ +P ++ LT L+ L LS N+ + L L N LE
Sbjct: 144 ITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHISDLRALCGLKNLDVLE 201
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
+L VLD+S N L+ +P EL+ L + N L+ P L +L L ++ N+
Sbjct: 101 ALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQ 159
Query: 350 LSGPIASSLN-LSSVEHLSLQKNALNGLIPGELFRS 384
L+ A LN L +++ L LQ+N+L IP F S
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 129/324 (39%), Gaps = 51/324 (15%)
Query: 168 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE----GNIPYSAGEMKELSLLDL 223
+L +L++ NN N L L Y+ +SK N + + L L+L
Sbjct: 330 YLEYLNMDDNNIPST-KSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNL 388
Query: 224 SRNYFSGGLSQSVVTGCFS----LELLDLSNNNFEGQFF-SEYMNLTRLRHLYFENNNF- 277
++N+ S + G FS L +LDL N E + E+ L + +Y N +
Sbjct: 389 TKNHIS-----KIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYL 443
Query: 278 ---------SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 328
++ +L +L+ +DIS + L IL +S N++
Sbjct: 444 QLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRP---------LRNLTILDLSNNNIAN 494
Query: 329 NVPVQLNNLERLRILDISENRLS---------GPIASSLNLSSVEHLSLQKNALNGLIPG 379
L LE L ILD N L+ GP+ LS + L+L+ N L+ IP
Sbjct: 495 INEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDE-IPV 553
Query: 380 ELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL-CQLQKLAM 437
+F++ +L ++NL N + P ++ ++LR L L N + D Q L
Sbjct: 554 GVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNS 613
Query: 438 MDLSRNKFSGSIPPCFANVLSWRV 461
+D+ N F C +SW V
Sbjct: 614 LDMRFNPFD-----CTCESISWFV 632
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 263 NLTRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 321
+L L+ LY +N G + G+ S T L VLD+ N L+ +P + + L+ L M
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 322 SKNHLEGNVPVQLNNLERLRILDISENRL-SGPIASSLNLSSVEHLSLQKN 371
N L +P + L L L + +N+L S P + LSS+ H L N
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 265 TRLRHLYFENNNFSGKIKDGLLSS-TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSK 323
T + LY +N + K++ G+ S +L+ L + +N L G +P + + ++L +L +
Sbjct: 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97
Query: 324 NHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFR 383
N L + L L+ L + N+L+ L+ + HL+L +N L + G R
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 384 SCKLVTLNLRDN 395
L L N
Sbjct: 158 LSSLTHAYLFGN 169
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 130
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 131 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 63 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 115
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 175
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 176 DTLLLQENSL 185
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM 59
LT LK L + NQL V LT+L YL+L+HN + +
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 229 SGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262
S GL+ VVTG L LL+ +NF G F E M
Sbjct: 123 SEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELM 156
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 294 LDISNNMLSGHI----PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENR 349
LD+S+N L + P M +SS L L++S LE VP L +LR+LD+S NR
Sbjct: 229 LDLSHNSLRATVNPSAPRCM--WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR 283
Query: 350 LSGPIASSLNLSSVEHLSLQKNALNGLIPG 379
L+ L V++L+L N L+PG
Sbjct: 284 LNR-APQPDELPEVDNLTLDGNPF--LVPG 310
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 232 LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSL 291
L + G +L+ L L +NN + + + +L L HL+ N + SL
Sbjct: 119 LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSL 178
Query: 292 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKN--HLEGNVPVQLNNLERLRILD 344
L + N ++ PH + + + + N L V V L +L+ LR+ D
Sbjct: 179 DRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 57/145 (39%), Gaps = 6/145 (4%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNLSSVEHLSLQKNA 372
L IL + N L G L L LD+S+N R+ P + L + L L +
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP-TTFRGLGHLHTLHLDRCG 115
Query: 373 LNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQ 431
L L PG LFR L L L+DN + + NL L L GN +
Sbjct: 116 LQELGPG-LFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 432 LQKLAMMDLSRNKFSGSIPPCFANV 456
L L + L +N + P F ++
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDL 199
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 39/250 (15%)
Query: 127 HNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN--------- 177
H + P ++ L +L L +N+ +GI L LD+S N
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPT 98
Query: 178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS--GGLS-- 233
FRG L H + L + ++ F G +++ +L L N F G L+
Sbjct: 99 TFRG-LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 234 -----------QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK 282
+ G SL+ L L N+ + +L RL LY NN S
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPA 217
Query: 283 DGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSE-----LEILSMSKNHLEGNVPVQL--N 335
+ L+ SLQ L +++N W+ + + L+ S + + N+P +L
Sbjct: 218 EVLVPLRSLQYLRLNDNP-------WVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLAGR 270
Query: 336 NLERLRILDI 345
+L+RL D+
Sbjct: 271 DLKRLAASDL 280
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
L L Y+ + N + + ++ L+ L L N S + + G SL+ L L
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQ 186
Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
N + +L RL LY NN S + L +LQ L +++N
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 8/158 (5%)
Query: 304 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNL 360
H+P L IL + N L L L LD+S+N R P A+ L
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGL 104
Query: 361 SSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
+ L L + L L PG LFR L L L+DN + NL L L GN
Sbjct: 105 GRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 420 HLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPPCFANV 456
+ +P++ + L L + L +N+ + P F ++
Sbjct: 164 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 536 VTGLDLSCNQLTGEIPSDIGQLQAILAXXXXXXXXXGSIPESFSNLKMIESLDISYN--- 592
V LDLS N++T SD+ + + A +SFS+L +E LD+SYN
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 593 KLTGQIPPQLTALNFLSIFNVSYNNL 618
L+ L++L FL++ Y L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTL 139
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250
L L Y+ + N + + ++ L+ L L N S + + G SL+ L L
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQ 185
Query: 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299
N + +L RL LY NN S + L +LQ L +++N
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 8/158 (5%)
Query: 304 HIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISEN---RLSGPIASSLNL 360
H+P L IL + N L L L LD+S+N R P A+ L
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGL 103
Query: 361 SSVEHLSLQKNALNGLIPGELFRS-CKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419
+ L L + L L PG LFR L L L+DN + NL L L GN
Sbjct: 104 GRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 420 HLQGPIPDQLCQ-LQKLAMMDLSRNKFSGSIPPCFANV 456
+ +P++ + L L + L +N+ + P F ++
Sbjct: 163 RISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 213 GEMKELSLLDLSRNYFSGG--LSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270
G + L LDLS N L Q++ +L +LD+S N L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 271 YFENNNFSGKIKDGLLSST-SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326
Y + N + GLL+ T L+ L ++NN L+ +P + N L+ L + +N L
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRL------------------------S 351
L+ ++K ++G +PV L LD+S N+L S
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 352 GPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL 411
P+ + L ++ L L+ N L L PG L + KL L+L +N + +N NL
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 412 RFLLLGGNHL 421
LLL N L
Sbjct: 175 DTLLLQENSL 184
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRI-LDI 345
TSL+VL + NN L+ ++ LE L +S N LE VPV+ ++ E I
Sbjct: 160 TSLEVLSVRNNQLT-----FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 346 SENRLSGPIASSLNLSSVEHLSLQKNALNGLI 377
ENR++ + L+L + L+ N L+ I
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDNPLSSRI 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,327,133
Number of Sequences: 62578
Number of extensions: 872968
Number of successful extensions: 2834
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 571
length of query: 735
length of database: 14,973,337
effective HSP length: 106
effective length of query: 629
effective length of database: 8,340,069
effective search space: 5245903401
effective search space used: 5245903401
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)