Query 004704
Match_columns 735
No_of_seqs 696 out of 5279
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 11:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.1E-67 6.7E-72 627.5 43.9 543 19-646 68-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4E-61 8.6E-66 574.9 37.9 530 1-617 74-605 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1E-43 2.2E-48 343.8 -14.7 478 17-619 42-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 7E-40 1.5E-44 330.9 8.0 391 22-420 54-450 (873)
5 KOG4194 Membrane glycoprotein 100.0 1.2E-39 2.7E-44 329.1 9.1 365 169-616 80-449 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.7E-41 5.9E-46 326.9 -13.3 478 89-642 40-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.4E-37 7.3E-42 328.1 -2.5 422 1-453 3-426 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.4E-36 3E-41 323.5 -3.7 482 24-617 2-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.3E-34 7.2E-39 291.7 -2.3 379 148-615 12-395 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.4E-34 9.5E-39 290.8 -1.4 384 94-590 7-394 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.3E-28 2.9E-33 238.9 -5.1 413 168-616 68-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 4.3E-23 9.3E-28 247.2 26.6 318 183-593 580-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.3E-26 2.9E-31 225.1 -3.7 279 20-302 67-359 (498)
14 PLN03210 Resistant to P. syrin 99.9 9.6E-23 2.1E-27 244.2 25.5 341 87-444 551-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 7.2E-22 1.6E-26 219.1 17.7 81 535-624 383-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 5.9E-21 1.3E-25 211.8 18.5 263 119-428 202-464 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.3E-19 2.8E-24 202.8 13.4 222 194-446 180-401 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.6E-19 3.5E-24 202.0 13.5 202 217-446 179-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 9.8E-19 2.1E-23 182.6 4.7 208 1-229 3-234 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-18 3.7E-23 180.8 3.8 204 240-444 80-318 (319)
21 KOG0617 Ras suppressor protein 99.7 2E-19 4.2E-24 155.4 -4.4 90 354-446 26-115 (264)
22 KOG0617 Ras suppressor protein 99.7 1.1E-18 2.5E-23 150.7 -3.3 181 381-643 29-213 (264)
23 PLN03150 hypothetical protein; 99.6 1.4E-15 3.1E-20 170.2 10.4 117 535-651 419-537 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 1.5E-14 3.3E-19 148.1 -3.4 171 364-620 78-248 (722)
25 COG4886 Leucine-rich repeat (L 99.3 5.6E-12 1.2E-16 135.4 9.2 198 342-624 97-295 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 2.2E-13 4.7E-18 139.8 -4.0 193 242-444 76-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 2.2E-11 4.7E-16 130.9 8.3 201 318-603 97-298 (394)
28 PLN03150 hypothetical protein; 99.2 3.4E-11 7.3E-16 135.1 8.4 90 534-623 442-532 (623)
29 KOG1909 Ran GTPase-activating 99.2 6E-12 1.3E-16 122.3 0.9 238 15-254 25-311 (382)
30 KOG3207 Beta-tubulin folding c 99.2 8.1E-12 1.8E-16 124.6 1.8 216 17-278 118-339 (505)
31 KOG1259 Nischarin, modulator o 99.1 8.9E-12 1.9E-16 118.0 0.7 88 533-623 328-416 (490)
32 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 122.7 2.2 162 92-254 119-284 (505)
33 KOG1909 Ran GTPase-activating 99.1 2E-11 4.4E-16 118.6 1.6 252 38-302 24-311 (382)
34 KOG1259 Nischarin, modulator o 99.0 5.2E-11 1.1E-15 112.9 1.1 129 288-422 283-412 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.2E-15 103.0 6.7 129 116-249 17-148 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 9.6E-10 2.1E-14 100.7 6.3 122 316-440 21-147 (175)
37 PF13855 LRR_8: Leucine rich r 98.9 5.2E-10 1.1E-14 84.1 3.3 60 559-618 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.7E-14 82.0 3.3 61 534-594 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 5E-10 1.1E-14 120.4 -0.7 85 536-623 234-322 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.8 5.4E-09 1.2E-13 119.9 5.4 126 119-250 524-651 (889)
41 KOG0531 Protein phosphatase 1, 98.8 1.2E-09 2.6E-14 117.5 -0.2 246 18-281 70-321 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.7 2E-08 4.3E-13 115.4 7.6 59 533-591 769-828 (889)
43 KOG2120 SCF ubiquitin ligase, 98.6 2.1E-09 4.7E-14 102.2 -3.5 180 118-299 185-373 (419)
44 KOG2120 SCF ubiquitin ligase, 98.6 3.6E-09 7.8E-14 100.7 -3.3 179 21-202 186-373 (419)
45 KOG4579 Leucine-rich repeat (L 98.5 7.4E-09 1.6E-13 87.1 -2.8 86 535-623 78-163 (177)
46 KOG2982 Uncharacterized conser 98.4 1.6E-07 3.5E-12 89.7 2.9 217 16-255 41-263 (418)
47 COG5238 RNA1 Ran GTPase-activa 98.4 1.2E-07 2.5E-12 89.4 1.6 217 18-254 28-285 (388)
48 KOG1859 Leucine-rich repeat pr 98.4 1.4E-08 3.1E-13 107.7 -5.3 128 119-254 165-292 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.3 2.7E-07 5.8E-12 87.0 1.2 204 1-205 35-285 (388)
50 KOG2982 Uncharacterized conser 98.2 4.1E-07 9E-12 86.9 2.0 206 215-422 44-262 (418)
51 KOG1859 Leucine-rich repeat pr 98.2 3.2E-08 7E-13 105.1 -5.9 178 184-374 102-292 (1096)
52 KOG4579 Leucine-rich repeat (L 98.1 3.3E-07 7.2E-12 77.4 -2.2 84 167-254 53-136 (177)
53 PF12799 LRR_4: Leucine Rich r 98.0 6.9E-06 1.5E-10 56.2 3.6 38 20-58 1-38 (44)
54 PRK15386 type III secretion pr 98.0 2.8E-05 6E-10 80.4 9.0 54 360-419 51-104 (426)
55 PF12799 LRR_4: Leucine Rich r 98.0 4.9E-06 1.1E-10 57.0 2.3 36 559-595 2-37 (44)
56 KOG4341 F-box protein containi 97.9 9.9E-07 2.2E-11 88.4 -2.1 282 15-296 159-459 (483)
57 KOG4341 F-box protein containi 97.7 1.6E-06 3.4E-11 87.1 -4.7 34 316-349 403-437 (483)
58 PF13306 LRR_5: Leucine rich r 97.7 8.1E-05 1.7E-09 65.8 5.8 124 136-267 5-128 (129)
59 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 66.8 5.8 124 171-299 23-150 (233)
60 PF13306 LRR_5: Leucine rich r 97.6 0.00012 2.6E-09 64.7 6.0 13 64-76 7-19 (129)
61 PRK15386 type III secretion pr 97.6 0.0003 6.5E-09 72.9 9.4 55 239-299 50-104 (426)
62 KOG3665 ZYG-1-like serine/thre 97.5 3.7E-05 7.9E-10 86.6 2.1 186 17-207 57-265 (699)
63 KOG1644 U2-associated snRNP A' 97.4 0.00019 4.2E-09 65.4 4.6 109 19-130 41-152 (233)
64 KOG3665 ZYG-1-like serine/thre 97.3 0.00017 3.7E-09 81.3 3.6 152 118-272 122-282 (699)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.4E-08 62.3 2.7 114 36-152 35-152 (260)
66 KOG2123 Uncharacterized conser 96.5 0.00015 3.3E-09 69.2 -4.5 64 16-81 37-100 (388)
67 KOG1947 Leucine rich repeat pr 96.4 0.0012 2.6E-08 73.1 1.1 111 19-129 187-306 (482)
68 KOG1947 Leucine rich repeat pr 96.3 0.00084 1.8E-08 74.4 -0.6 79 212-301 358-439 (482)
69 KOG2739 Leucine-rich acidic nu 96.3 0.0031 6.7E-08 60.3 3.1 82 359-440 63-150 (260)
70 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.6E-08 36.1 0.6 19 584-603 2-20 (22)
71 KOG2123 Uncharacterized conser 95.5 0.00073 1.6E-08 64.6 -4.5 101 19-149 18-123 (388)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0061 1.3E-07 34.6 0.6 20 560-580 2-21 (22)
73 KOG4308 LRR-containing protein 92.9 0.00086 1.9E-08 72.4 -11.7 85 46-130 89-184 (478)
74 PF13504 LRR_7: Leucine rich r 92.9 0.052 1.1E-06 28.4 0.9 13 583-595 2-14 (17)
75 KOG0473 Leucine-rich repeat pr 92.7 0.0055 1.2E-07 57.2 -4.9 83 534-619 42-124 (326)
76 KOG4308 LRR-containing protein 92.6 0.0018 4E-08 69.8 -9.6 191 96-303 89-304 (478)
77 PF13504 LRR_7: Leucine rich r 92.1 0.097 2.1E-06 27.4 1.3 13 119-131 2-14 (17)
78 smart00369 LRR_TYP Leucine-ric 90.7 0.19 4.1E-06 29.7 1.8 14 582-595 2-15 (26)
79 smart00370 LRR Leucine-rich re 90.7 0.19 4.1E-06 29.7 1.8 14 582-595 2-15 (26)
80 smart00370 LRR Leucine-rich re 90.2 0.29 6.2E-06 28.9 2.3 16 20-35 2-17 (26)
81 smart00369 LRR_TYP Leucine-ric 90.2 0.29 6.2E-06 28.9 2.3 16 20-35 2-17 (26)
82 PF13516 LRR_6: Leucine Rich r 87.2 0.13 2.8E-06 29.7 -0.6 15 20-34 2-16 (24)
83 KOG0473 Leucine-rich repeat pr 84.2 0.035 7.6E-07 52.1 -6.1 90 549-640 32-122 (326)
84 KOG3864 Uncharacterized conser 83.4 0.087 1.9E-06 48.6 -3.9 81 145-225 103-185 (221)
85 KOG3864 Uncharacterized conser 81.0 0.22 4.7E-06 46.1 -2.3 36 94-129 101-136 (221)
86 smart00365 LRR_SD22 Leucine-ri 80.8 1.3 2.9E-05 26.2 1.7 15 581-595 1-15 (26)
87 smart00364 LRR_BAC Leucine-ric 74.2 2.2 4.8E-05 25.1 1.4 13 583-595 3-15 (26)
88 KOG4242 Predicted myosin-I-bin 71.7 26 0.00056 37.2 9.3 36 316-351 415-453 (553)
89 smart00368 LRR_RI Leucine rich 68.4 3.9 8.5E-05 24.6 1.7 14 582-595 2-15 (28)
90 PF07204 Orthoreo_P10: Orthore 63.6 4.7 0.0001 31.9 1.7 30 681-710 40-69 (98)
91 KOG4242 Predicted myosin-I-bin 60.5 37 0.0008 36.2 7.8 232 21-254 215-481 (553)
92 KOG3763 mRNA export factor TAP 51.6 13 0.00027 40.3 3.0 13 118-130 218-230 (585)
93 TIGR00864 PCC polycystin catio 46.9 12 0.00026 48.7 2.2 32 564-595 1-32 (2740)
94 PF15102 TMEM154: TMEM154 prot 46.8 17 0.00038 31.8 2.6 23 690-712 66-88 (146)
95 PF04478 Mid2: Mid2 like cell 40.4 11 0.00025 33.2 0.5 32 684-715 52-83 (154)
96 PF02439 Adeno_E3_CR2: Adenovi 39.6 28 0.00061 22.6 2.0 21 685-705 9-29 (38)
97 PF15050 SCIMP: SCIMP protein 37.4 18 0.00039 30.2 1.2 27 684-710 8-34 (133)
98 PF08693 SKG6: Transmembrane a 34.2 20 0.00043 23.7 0.8 18 687-704 16-33 (40)
99 smart00367 LRR_CC Leucine-rich 32.1 33 0.00071 20.0 1.5 13 43-55 1-13 (26)
100 KOG3763 mRNA export factor TAP 31.6 31 0.00067 37.5 2.1 38 91-128 215-254 (585)
101 TIGR00864 PCC polycystin catio 28.5 32 0.00069 45.1 1.9 32 540-571 1-32 (2740)
102 PF14575 EphA2_TM: Ephrin type 26.0 67 0.0015 24.9 2.6 21 688-708 6-26 (75)
103 PF15179 Myc_target_1: Myc tar 21.6 56 0.0012 29.8 1.6 25 682-706 23-47 (197)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-67 Score=627.48 Aligned_cols=543 Identities=34% Similarity=0.507 Sum_probs=510.4
Q ss_pred CCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV 98 (735)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 98 (735)
..+++.|||++|.+++.+|.+|..+++|++|+|++|++++.+|...+.++++|++|++++|++.+.++. ..+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCE
Confidence 457999999999999999999999999999999999999999977778999999999999998776664 35789999
Q ss_pred EEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCc
Q 004704 99 LGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN 178 (735)
Q Consensus 99 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 178 (735)
|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 99999999999999999999999999999999988998764 89999999999999999999999999999999999999
Q ss_pred CCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCc
Q 004704 179 FRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF 258 (735)
Q Consensus 179 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 258 (735)
+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|
T Consensus 224 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 224 LSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred cCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCC
Confidence 99999998876 8999999999999999999999999999999999999998888776 479999999999999999999
Q ss_pred ccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCC
Q 004704 259 SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 338 (735)
Q Consensus 259 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 338 (735)
..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+.. |+.|++++|++.+.+|..+..++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC-CcEEECCCCeeEeeCChhHhCcC
Confidence 99999999999999999999999999999999999999999999999999999877 99999999999999999999999
Q ss_pred CCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEcc
Q 004704 339 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417 (735)
Q Consensus 339 ~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (735)
+|+.|++++|++.+..+..+ .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 99999999999998888776 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccc
Q 004704 418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFG 497 (735)
Q Consensus 418 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (735)
+|++.+.+|..+ ..++|+.|++++|++++.+|..+.++
T Consensus 461 ~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l----------------------------------------- 498 (968)
T PLN00113 461 RNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL----------------------------------------- 498 (968)
T ss_pred CceeeeecCccc-ccccceEEECcCCccCCccChhhhhh-----------------------------------------
Confidence 999998888765 46899999999999999888776543
Q ss_pred hhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCccc
Q 004704 498 MWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES 577 (735)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 577 (735)
++|+.|+|++|++.+.+|..++.+++|++|+|++|.+++.+|..
T Consensus 499 ------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 499 ------------------------------------SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred ------------------------------------hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 56788999999999999999999999999999999999999999
Q ss_pred ccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCCccCCcccCCCCCCCCcc
Q 004704 578 FSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 646 (735)
Q Consensus 578 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~ 646 (735)
|+++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...+|.|||.+|+..
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999853
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-61 Score=574.91 Aligned_cols=530 Identities=33% Similarity=0.496 Sum_probs=488.9
Q ss_pred CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhh-CCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccc
Q 004704 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVIS-NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTR 79 (735)
Q Consensus 1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~ 79 (735)
|||++|.++|.++..|..+++|++|+|++|++++.+|..+. ++++|++|+|++|++++.+|. ..+++|++|++++|
T Consensus 74 L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n 150 (968)
T PLN00113 74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNN 150 (968)
T ss_pred EEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCC
Confidence 58899999999999999999999999999999988888654 999999999999999988883 56899999999999
Q ss_pred cccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccC
Q 004704 80 NNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL 159 (735)
Q Consensus 80 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 159 (735)
.+.+..+. .+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+. ++++|++|++++|.+++..
T Consensus 151 ~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 151 MLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred cccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcC
Confidence 88766554 377899999999999999999999999999999999999999988998764 8999999999999999999
Q ss_pred cCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhC
Q 004704 160 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239 (735)
Q Consensus 160 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 239 (735)
|..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~ 306 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQ 306 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH-cC
Confidence 999999999999999999999899988876 8999999999999999999999999999999999999998877665 67
Q ss_pred CCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEE
Q 004704 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 319 (735)
Q Consensus 240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L 319 (735)
+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..... |+.|
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~-L~~L 385 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN-LFKL 385 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC-CCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988877 9999
Q ss_pred EcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704 320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 398 (735)
Q Consensus 320 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 398 (735)
++++|.+.+.+|..+..+++|+.|++++|++++..+..+ .++.|+.|++++|.+.+.++..+..+++|+.|++++|++.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 999999999999999999999999999999998888777 8999999999999999999998999999999999999999
Q ss_pred ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704 399 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478 (735)
Q Consensus 399 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 478 (735)
+.+|..+. .++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+.++
T Consensus 466 ~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---------------------- 522 (968)
T PLN00113 466 GGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC---------------------- 522 (968)
T ss_pred eecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc----------------------
Confidence 88887664 5899999999999999999999999999999999999999999876553
Q ss_pred hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704 479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 558 (735)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 558 (735)
++|+.|+|++|.++|.+|..++.++
T Consensus 523 -------------------------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 523 -------------------------------------------------------KKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred -------------------------------------------------------cCCCEEECCCCcccccCChhHhCcc
Confidence 5688899999999999999999999
Q ss_pred cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCc
Q 004704 559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNN 617 (735)
Q Consensus 559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~ 617 (735)
+|+.|+|++|++++.+|..+.++++|+.|++++|++.|.+|.. .....+....+.+|+
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 9999999999999999999999999999999999999999965 333344455566666
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-43 Score=343.75 Aligned_cols=478 Identities=27% Similarity=0.397 Sum_probs=311.5
Q ss_pred CCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCe
Q 004704 17 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQL 96 (735)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L 96 (735)
..-..|+.|++++|.+. .+-+.+.++..|.+|++++|+++ ..| .+++.+..++.++.++|...
T Consensus 42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-------------- 104 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-------------- 104 (565)
T ss_pred hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh--------------
Confidence 34456777788888777 44556777788888888888776 455 35666766666666655432
Q ss_pred eEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccC
Q 004704 97 IVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISC 176 (735)
Q Consensus 97 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 176 (735)
.+|+.+..+.+++.++.++|.+. .+|+.++ .+..++.++..+|+++.. |..+..+.++..+++.+
T Consensus 105 ------------~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 105 ------------ELPEQIGSLISLVKLDCSSNELK-ELPDSIG-RLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEG 169 (565)
T ss_pred ------------hccHHHhhhhhhhhhhcccccee-ecCchHH-HHhhhhhhhccccccccC-chHHHHHHHHHHhhccc
Confidence 34555555555555555555555 4555443 455555555555555544 34444555555666666
Q ss_pred CcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCc
Q 004704 177 NNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQ 256 (735)
Q Consensus 177 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 256 (735)
|+++ ..|+.... ++.|++||...|.+. .+|..++.+.+|..|++.+|++. .+|. |.+|+.|++++++.|.+.-.
T Consensus 170 n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 170 NKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEML 243 (565)
T ss_pred cchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhh
Confidence 6665 44444444 456666666665554 55666666666666666666665 4552 34566666666666666532
Q ss_pred CcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCC
Q 004704 257 FFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNN 336 (735)
Q Consensus 257 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 336 (735)
..+...+++++..||+.+|+++ ..|+.+.-+++|++||+++|.++ .+|..++++ . |+.|-+.+|.+..+-.+.+.+
T Consensus 244 pae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-h-L~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-H-LKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred HHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-e-eeehhhcCCchHHHHHHHHcc
Confidence 2233335666666666666665 55555556666666666666665 555556655 3 666666666554211110000
Q ss_pred C--CCCCEEE-------cccC---------CCCccCCCccCCCCccEEEccCCcccccCcccccCCCC---CcEEeCCCC
Q 004704 337 L--ERLRILD-------ISEN---------RLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCK---LVTLNLRDN 395 (735)
Q Consensus 337 l--~~L~~L~-------L~~n---------~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---L~~L~l~~n 395 (735)
- .-|++|. ++.. ...+..+......+.+.|++++-+++.. |...+.... ....+++.|
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V-PdEVfea~~~~~Vt~VnfskN 398 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV-PDEVFEAAKSEIVTSVNFSKN 398 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC-CHHHHHHhhhcceEEEecccc
Confidence 0 0011110 0100 0111222222566788888888888844 555444333 788999999
Q ss_pred cccccCChhhhCCCCccE-EEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCC
Q 004704 396 TFSGRIPHQINEHSNLRF-LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS 474 (735)
Q Consensus 396 ~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 474 (735)
++. ++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+
T Consensus 399 qL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l------------------ 457 (565)
T KOG0472|consen 399 QLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL------------------ 457 (565)
T ss_pred hHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhh------------------
Confidence 998 78888877766655 44555555 488999999999999999999886 777766543
Q ss_pred cccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccc
Q 004704 475 PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI 554 (735)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l 554 (735)
..|+.||+|.|+|. .+|..+
T Consensus 458 -----------------------------------------------------------v~Lq~LnlS~NrFr-~lP~~~ 477 (565)
T KOG0472|consen 458 -----------------------------------------------------------VRLQTLNLSFNRFR-MLPECL 477 (565)
T ss_pred -----------------------------------------------------------hhhheecccccccc-cchHHH
Confidence 35788999999999 899999
Q ss_pred cccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCc
Q 004704 555 GQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619 (735)
Q Consensus 555 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 619 (735)
..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++++|++|++++|++.
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999999999999888888999999999999999999 89999999999999999999998
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7e-40 Score=330.92 Aligned_cols=391 Identities=23% Similarity=0.235 Sum_probs=329.5
Q ss_pred CCEEeCCCCcCCCCcchhhhCC--CCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEE
Q 004704 22 LKILDISSNQLNGSLPSVISNL--TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL 99 (735)
Q Consensus 22 L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 99 (735)
-+.||.+++.+..+.-..+.+. +.-+.||+|+|+++ .+....|.++++|+++.+..|.+. .+|.. .....+|+.|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKL 130 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEE
Confidence 3556777777764322223222 23456888888886 444466788888888888766543 33321 2344579999
Q ss_pred EeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcC
Q 004704 100 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF 179 (735)
Q Consensus 100 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 179 (735)
+|.+|.|+..-.+.+..++.|+.||||.|.|+ .+|..-|..-.++++|+|++|.|+.+....|..+.+|.+|.|+.|++
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 99999999998999999999999999999998 88877666667999999999999999999999999999999999999
Q ss_pred CCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcc
Q 004704 180 RGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFS 259 (735)
Q Consensus 180 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 259 (735)
+ .+|...|+.+++|+.|+|..|.+.-.-...|.++++|+.|.+..|.+. .+....|-++.++++|+|+.|+++..-..
T Consensus 210 t-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 210 T-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred c-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcc
Confidence 9 999999998999999999999997444667899999999999999998 77788888999999999999999988888
Q ss_pred cccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCC
Q 004704 260 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER 339 (735)
Q Consensus 260 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 339 (735)
++.+++.|+.|++++|.|....++++...++|+.|+|++|+++..-+..+..+.. |++|+|++|.++.....+|..+++
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhh
Confidence 8999999999999999999888999999999999999999999555666777766 999999999999777788999999
Q ss_pred CCEEEcccCCCCccCCCc---c-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704 340 LRILDISENRLSGPIASS---L-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 415 (735)
Q Consensus 340 L~~L~L~~n~l~~~~~~~---~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 415 (735)
|++|||++|.+++.+.+. + ++++|+.|++.+|++..+...+|.++.+|+.|||.+|.|...-|.+|..+ .|++|.
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 999999999998766543 3 78999999999999988878889999999999999999988888888888 888887
Q ss_pred ccCCc
Q 004704 416 LGGNH 420 (735)
Q Consensus 416 L~~n~ 420 (735)
+..-.
T Consensus 446 ~nSss 450 (873)
T KOG4194|consen 446 MNSSS 450 (873)
T ss_pred hcccc
Confidence 76533
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-39 Score=329.13 Aligned_cols=365 Identities=23% Similarity=0.289 Sum_probs=282.4
Q ss_pred cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEc
Q 004704 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL 248 (735)
Q Consensus 169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 248 (735)
-++|++++|.+. .+....+..+++|+++++.+|.++ .+|.......+|+.|+|.+|.|+ .+..+-...++.|++|||
T Consensus 80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 455777777776 455555555777777777777776 67766666667888888888777 555555566778888888
Q ss_pred cCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhh-hcccCcEEEcCCCcCC
Q 004704 249 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN-FSSELEILSMSKNHLE 327 (735)
Q Consensus 249 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~-~~~~L~~L~l~~n~l~ 327 (735)
+.|.|+......|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|+++ .+|...++ ++. |+.|+|..|+|.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~-L~~LdLnrN~ir 234 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPK-LESLDLNRNRIR 234 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcch-hhhhhcccccee
Confidence 888887666666776778888888888888766777888888888888888888 56655444 666 888888888887
Q ss_pred CCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhh
Q 004704 328 GNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406 (735)
Q Consensus 328 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 406 (735)
-.-.-.|.++++|+.|.+..|.+...-...| ++.++++|+|..|++...-.+++.++++|+.|++++|.|...-++.+.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 4446678888888888888888887777666 888888888888888888888888888999999999988877788888
Q ss_pred CCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccC
Q 004704 407 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL 486 (735)
Q Consensus 407 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (735)
-+++|++|+|++|+++...+..|..+..|++|.|++|+++..-...|.
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-------------------------------- 362 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-------------------------------- 362 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH--------------------------------
Confidence 888899999999998877788888888888999998888632222221
Q ss_pred CCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCc---cccccccCCeE
Q 004704 487 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS---DIGQLQAILAL 563 (735)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~---~l~~l~~L~~L 563 (735)
.+.+|+.|||++|.++..|.+ .|..+++|+.|
T Consensus 363 ---------------------------------------------~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 363 ---------------------------------------------GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ---------------------------------------------HhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 235777888888888765543 46778889999
Q ss_pred eCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccC
Q 004704 564 NLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 616 (735)
Q Consensus 564 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 616 (735)
.|.+|++..+...+|.++.+||.|||.+|.|..+-|.+|..+ .|+.|-+..-
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 999999986666789999999999999999988888888888 7777665433
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.7e-41 Score=326.93 Aligned_cols=478 Identities=25% Similarity=0.350 Sum_probs=331.5
Q ss_pred CCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCC
Q 004704 89 NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF 168 (735)
Q Consensus 89 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 168 (735)
.|..-..|+.+.+++|.+. .+.+.+.++..|.+|++++|+++ ++|+.+. .+..++.++.++|++... |.......+
T Consensus 40 ~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls~l-p~~i~s~~~ 115 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLSEL-PEQIGSLIS 115 (565)
T ss_pred hhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHhhc-cHHHhhhhh
Confidence 4445556667777777766 34445667777777777777776 6776664 667777777777777654 455666677
Q ss_pred cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEc
Q 004704 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL 248 (735)
Q Consensus 169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 248 (735)
+..++.++|.+. ++|++++. +..++.++..+|+++ ..|.+++.+.++..+++.+|++. ..|+.... +..|+++|.
T Consensus 116 l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDC 190 (565)
T ss_pred hhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhccc
Confidence 777777777777 77777776 457777777777776 67777777777777777777776 55555544 777777777
Q ss_pred cCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhh-hhcccCcEEEcCCCcCC
Q 004704 249 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG-NFSSELEILSMSKNHLE 327 (735)
Q Consensus 249 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~~L~~L~l~~n~l~ 327 (735)
..|.++ .+|+.++.+.+|+.|++.+|++. ..| .|.++..|++++++.|+++ .+|.... .+++ +..||+.+|+++
T Consensus 191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~-l~vLDLRdNklk 265 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS-LLVLDLRDNKLK 265 (565)
T ss_pred chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc-ceeeeccccccc
Confidence 777766 56677777777777777777776 555 5777777777777777776 6676666 3444 777788888777
Q ss_pred CCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCC--CCcEEe-------CCCCc--
Q 004704 328 GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC--KLVTLN-------LRDNT-- 396 (735)
Q Consensus 328 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~-------l~~n~-- 396 (735)
..|+.++-+++|.+||+++|.+++.++...++ +|+.|.+.+|.+..+-.+.+.+-+ -|++|. ++.-.
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 67777777777778888888777776666666 777777777776533111111100 011111 00000
Q ss_pred -c-cccCC----hhhhCCCCccEEEccCCcCCCCCchhhhcCCC---CCEEECcCCcCCCCCCchhhcccccccc---cC
Q 004704 397 -F-SGRIP----HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRNKFSGSIPPCFANVLSWRVG---SD 464 (735)
Q Consensus 397 -l-~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~l~~~---~~ 464 (735)
- ....+ .......+.+.|++++-+++ .+|+....-.. ....+++.|++. .+|..+..++.+... +.
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence 0 00111 11223456778888888887 45554433333 667788888886 666655544322210 11
Q ss_pred CccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCC
Q 004704 465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCN 544 (735)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 544 (735)
+.... + ....+.++.++.|+|++|
T Consensus 422 n~isf------------------------v--------------------------------~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 422 NKISF------------------------V--------------------------------PLELSQLQKLTFLDLSNN 445 (565)
T ss_pred Ccccc------------------------c--------------------------------hHHHHhhhcceeeecccc
Confidence 10000 0 000134578899999999
Q ss_pred cccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 545 QLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 545 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
-+. .+|.+++.+..|+.||+|+|++. .+|..+..+..||.+--++|++....|+.+.+|..|.+||+.+|.+...+|.
T Consensus 446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~ 523 (565)
T KOG0472|consen 446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI 523 (565)
T ss_pred hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh
Confidence 888 89999999999999999999999 8999999999999999999999977777799999999999999999999998
Q ss_pred CCCCCccCCcccCCCCCC
Q 004704 625 KGQFATFDESSYRGNPSL 642 (735)
Q Consensus 625 ~~~~~~~~~~~~~gN~~l 642 (735)
.+..+.+....+.|||.-
T Consensus 524 LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccceeEEEecCCccC
Confidence 899999999999999865
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-37 Score=328.15 Aligned_cols=422 Identities=25% Similarity=0.286 Sum_probs=242.0
Q ss_pred CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccc
Q 004704 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN 80 (735)
Q Consensus 1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~ 80 (735)
+|+|...+. .+|..+..-..++.|+++.|.+-...-+...+.-+|+.||+|+|++. .+| ..+..+.+|+.|.++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhh
Confidence 466777766 56777776667899999999776433445566777999999999885 677 457788888888888765
Q ss_pred ccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCc
Q 004704 81 NTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ 160 (735)
Q Consensus 81 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 160 (735)
+.. .+ .+...+.+|+++.|.+|.+. ..|..+..+++|++||+|.|.+. .+|..+. .+..++.+..++|.....
T Consensus 80 i~~-vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~-- 152 (1081)
T KOG0618|consen 80 IRS-VP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQR-- 152 (1081)
T ss_pred Hhh-Cc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhh--
Confidence 532 22 33456678888888877776 67778888888888888888886 7777664 677777777777722111
Q ss_pred CCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCC
Q 004704 161 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGC 240 (735)
Q Consensus 161 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 240 (735)
++... ++.+++..|.+.+.++.++.. ++. .|+|.+|.+. -..+..+.+|+.|....|++. .+. -.-
T Consensus 153 --lg~~~-ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g 218 (1081)
T KOG0618|consen 153 --LGQTS-IKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISG 218 (1081)
T ss_pred --hcccc-chhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecC
Confidence 11111 566666666666666666544 222 4666666654 123455566666666666554 111 123
Q ss_pred CCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEE
Q 004704 241 FSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILS 320 (735)
Q Consensus 241 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ 320 (735)
++|+.|+.++|.++...+ -....+|+++++++|+++ .+|+++..+.+|+.++..+|.++ .+|..+....+ |+.|.
T Consensus 219 ~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~-L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITS-LVSLS 293 (1081)
T ss_pred cchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhh-HHHHH
Confidence 456666666665552211 112345566666666655 44455556666666666666664 55555555544 55666
Q ss_pred cCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CC-CCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704 321 MSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NL-SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 398 (735)
Q Consensus 321 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 398 (735)
+..|.+. .+|....+++.|++|+|..|++...++..+ .. ..|..|..+.|++.......=...+.|+.|.+.+|.++
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 6665555 444555555556666666555554433322 11 12444444444444222111112234555555555555
Q ss_pred ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchh
Q 004704 399 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 453 (735)
Q Consensus 399 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 453 (735)
+..-..+.+..+|++|+|++|++.......+.++..|+.|+||+|+++ .+|.++
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 444444444555555555555554333333444555555555555554 344433
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=323.50 Aligned_cols=482 Identities=28% Similarity=0.365 Sum_probs=374.2
Q ss_pred EEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeC
Q 004704 24 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTK 103 (735)
Q Consensus 24 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 103 (735)
++|+|..++. .+|..+-.-..++.|+++.|-+- ..|.....+.-+|+.|+++.|..... |. .+..+.+|+.|+++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~f-p~-~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSF-PI-QITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccccC-Cc-hhhhHHHHhhcccch
Confidence 4688888888 77877766677999999999775 34455666666788888886654322 22 234566888888888
Q ss_pred CCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcC
Q 004704 104 CNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKL 183 (735)
Q Consensus 104 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 183 (735)
|.+. ..|.+..++.+|+++.|.+|.+. ..|..+. .+.+|+.|+++.|++... |..+..+..++.+..++|.-...+
T Consensus 78 n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~l 153 (1081)
T KOG0618|consen 78 NYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRL 153 (1081)
T ss_pred hhHh-hCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhh
Confidence 8777 45677778888888888888877 7777764 778888888888887654 566677777777888877221122
Q ss_pred ChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccC
Q 004704 184 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN 263 (735)
Q Consensus 184 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 263 (735)
+ . ..++.+++..|.+.+.++..+..+++ .|+|+.|.+. ... ...+.+|+.+....|++.... ..
T Consensus 154 g----~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~ 217 (1081)
T KOG0618|consen 154 G----Q--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----IS 217 (1081)
T ss_pred c----c--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ec
Confidence 2 1 13777888888888888888887777 7999999876 222 356888999999999887432 23
Q ss_pred CCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEE
Q 004704 264 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRIL 343 (735)
Q Consensus 264 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 343 (735)
-++++.|+.++|.++...+. ....+|++++++.|+++ .+|+|++.+.. |+.++..+|+++ .+|..+...++|+.|
T Consensus 218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~n-le~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACAN-LEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred CcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhccc-ceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 57899999999998833332 33468999999999998 78899999887 999999999996 788888899999999
Q ss_pred EcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCC-CCcEEeCCCCcccccCCh-hhhCCCCccEEEccCCcC
Q 004704 344 DISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPH-QINEHSNLRFLLLGGNHL 421 (735)
Q Consensus 344 ~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l 421 (735)
.+..|.+...++...+..+|++|+|..|.+....+..+.... +|..|+.+.|++. ..|. .=...+.|+.|++.+|.+
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcc
Confidence 999999987766666899999999999999855443333333 3788888888887 3442 222367899999999999
Q ss_pred CCCCchhhhcCCCCCEEECcCCcCCCCCCc-hhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhh
Q 004704 422 QGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR 500 (735)
Q Consensus 422 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (735)
+...-+.+.+.+.|+.|+|++|++. .+|. ++.+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k--------------------------------------------- 405 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK--------------------------------------------- 405 (1081)
T ss_pred cccchhhhccccceeeeeecccccc-cCCHHHHhc---------------------------------------------
Confidence 9888888999999999999999997 4443 3332
Q ss_pred hhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccC
Q 004704 501 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN 580 (735)
Q Consensus 501 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 580 (735)
++.|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.+
T Consensus 406 --------------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 406 --------------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred --------------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 356888999999999 89999999999999999999999 677 7999
Q ss_pred cCCCCEEeCCCCccccc-CCccccCCCCCCeEEcccCc
Q 004704 581 LKMIESLDISYNKLTGQ-IPPQLTALNFLSIFNVSYNN 617 (735)
Q Consensus 581 l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~ls~N~ 617 (735)
+++|+.+|+|.|+|+.. +|..... +.|++||+++|.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 99999999999999854 3443333 899999999997
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.3e-34 Score=291.70 Aligned_cols=379 Identities=24% Similarity=0.355 Sum_probs=240.2
Q ss_pred EECcCCcCc-ccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCc
Q 004704 148 LLLKNNSFS-GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRN 226 (735)
Q Consensus 148 L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 226 (735)
.|+++|.++ +..|.....+++++.|.|...++. .+|+.++. +++|++|.+++|.+. .+-..+..++.|+.+++..|
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc
Confidence 334444443 223334444555555555555555 56666655 566666666666655 34445556666666666666
Q ss_pred ccc-CccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCC
Q 004704 227 YFS-GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHI 305 (735)
Q Consensus 227 ~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 305 (735)
++. ..+|..+| .+..|+.|||++|++. ..|..+..-+++-.|+|++|+|..+....+.+++.|-.|||++|++. .+
T Consensus 89 ~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L 165 (1255)
T KOG0444|consen 89 NLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML 165 (1255)
T ss_pred ccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence 553 23555555 3666666666666666 35555666666666666666666332233455666666677777666 66
Q ss_pred CchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCC-ccCCCcc-CCCCccEEEccCCcccccCcccccC
Q 004704 306 PHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLS-GPIASSL-NLSSVEHLSLQKNALNGLIPGELFR 383 (735)
Q Consensus 306 p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~ 383 (735)
|+.+..+.. |++|.+++|.+.-.--..+..+++|++|.+++.+-+ ..+|... .+.+|..++++.|.+. ..|+.+..
T Consensus 166 PPQ~RRL~~-LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 166 PPQIRRLSM-LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred CHHHHHHhh-hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 666666655 677777776654333333455667777777766433 2333333 6777777777777776 56778888
Q ss_pred CCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCC-CCCCchhhcccccccc
Q 004704 384 SCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS-GSIPPCFANVLSWRVG 462 (735)
Q Consensus 384 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~ 462 (735)
+.+|+.|+|++|+|+ .+.-..+...+|++|+++.|+++ .+|++++++++|+.|.+.+|+++ .-+|..++++
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL------ 315 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL------ 315 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh------
Confidence 888888888888887 55555666678888888888888 78888888888888888888765 1244444433
Q ss_pred cCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECC
Q 004704 463 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS 542 (735)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 542 (735)
..|+.+..+
T Consensus 316 -----------------------------------------------------------------------~~Levf~aa 324 (1255)
T KOG0444|consen 316 -----------------------------------------------------------------------IQLEVFHAA 324 (1255)
T ss_pred -----------------------------------------------------------------------hhhHHHHhh
Confidence 345556667
Q ss_pred CCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEccc
Q 004704 543 CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY 615 (735)
Q Consensus 543 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 615 (735)
+|.+. ..|+.+..+..|+.|.|++|++. ..|+++.-++.|+.|||..|.---..|.-=..-++|+.-|+.+
T Consensus 325 nN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 325 NNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred ccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 77776 77888888888888888888877 6788888888888888888765533333222224555555443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.4e-34 Score=290.80 Aligned_cols=384 Identities=25% Similarity=0.328 Sum_probs=295.1
Q ss_pred CCeeEEEeeCCCCC-CCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEE
Q 004704 94 SQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 172 (735)
Q Consensus 94 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 172 (735)
+-.+-+++++|.++ +..|..+..+++++.|.|...++. .+|+.+. .+.+|++|.+++|++..+ ...+..++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISV-HGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhh-hhhhccchhhHHH
Confidence 44566788888888 678999999999999999999997 9999885 899999999999998865 3567788999999
Q ss_pred EccCCcCCC-cCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCC
Q 004704 173 DISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251 (735)
Q Consensus 173 ~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 251 (735)
.+..|++.. -+|..+|. +..|+.|||++|.+. ..|..+..-+++-+|+||+|+|. .||..+|-++..|-.|||++|
T Consensus 84 ~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 999998753 58888887 789999999999998 78888888899999999999997 899999888999999999999
Q ss_pred CCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccC-CCCCchhhhhcccCcEEEcCCCcCCCCC
Q 004704 252 NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMGNFSSELEILSMSKNHLEGNV 330 (735)
Q Consensus 252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 330 (735)
++. .+|+.+..+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.. |..+|++.|.+. ..
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N-L~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN-LRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh-hhhccccccCCC-cc
Confidence 998 56777888999999999999776333334556677788888876543 357777777765 788888888777 67
Q ss_pred CccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCC
Q 004704 331 PVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSN 410 (735)
Q Consensus 331 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 410 (735)
|+++..+++|+.|+|++|+++..-. ......+|++|+++.|+++ .+|+++..++.
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~------------------------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k 292 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNM------------------------TEGEWENLETLNLSRNQLT-VLPDAVCKLTK 292 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeec------------------------cHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence 7777777777777777777664221 2233446777777777776 67777777777
Q ss_pred ccEEEccCCcCCC-CCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCC
Q 004704 411 LRFLLLGGNHLQG-PIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNN 489 (735)
Q Consensus 411 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (735)
|+.|.+.+|+++- -+|..++++.+|+.+..++|++. ..|+.++.+
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC--------------------------------- 338 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC--------------------------------- 338 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh---------------------------------
Confidence 7777777776652 26777777777777777777774 666655543
Q ss_pred CCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCc
Q 004704 490 RSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNS 569 (735)
Q Consensus 490 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 569 (735)
..|+.|.|++|++- .+|+.|.-|+.|+.||+..|.
T Consensus 339 --------------------------------------------~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 339 --------------------------------------------VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred --------------------------------------------HHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 34566778888877 789999999999999999998
Q ss_pred CcccCcccccCcCCCCEEeCC
Q 004704 570 LSGSIPESFSNLKMIESLDIS 590 (735)
Q Consensus 570 l~~~~p~~~~~l~~L~~LdLs 590 (735)
---.+|.-=..-+.|+.-++.
T Consensus 374 nLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 374 NLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CccCCCCcchhhhcceeeecc
Confidence 663444322222556654443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-28 Score=238.93 Aligned_cols=413 Identities=19% Similarity=0.204 Sum_probs=245.5
Q ss_pred CcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCC-ccccCccchhhhhCCCCCCEE
Q 004704 168 FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR-NYFSGGLSQSVVTGCFSLELL 246 (735)
Q Consensus 168 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L 246 (735)
.-..++|..|+|+ .+|+..|+.+++|+.|||++|.|+...|.+|..++++..|.+.+ |+|+ .+|...|.++.+|+.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 3456677777776 67777777777777777777777767777777777777776666 6776 7777777888888888
Q ss_pred EccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCC------------CCCchhhhhcc
Q 004704 247 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------------HIPHWMGNFSS 314 (735)
Q Consensus 247 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~------------~~p~~~~~~~~ 314 (735)
.+.-|++.-...++|..++++..|.+.+|.+...-..+|..+.+++.+.+..|.+.. ..|..++...-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 888788777777778888888888888887773333467777778888777776321 11111111111
Q ss_pred cCcEEEcCCCcCCCCCCccCCCC-CCCCEEEcccCCCCccCC-Ccc-CCCCccEEEccCCcccccCcccccCCCCCcEEe
Q 004704 315 ELEILSMSKNHLEGNVPVQLNNL-ERLRILDISENRLSGPIA-SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 391 (735)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 391 (735)
..-..+.+.++..+.+..|... +.+..--.+.+......| ..+ .+++|+.|++++|+++++-+.+|.+...++.|.
T Consensus 226 -~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 -VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred -cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 2222233333332323322211 111111112222222222 233 688888888888888888888888888888888
Q ss_pred CCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCC-chhhcccccccccCCccCCC
Q 004704 392 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP-PCFANVLSWRVGSDDVLNGS 470 (735)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~~~~~~~~~ 470 (735)
|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|.+|.+-.|.+...-- .+++. |++..+ .....
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~--Wlr~~~--~~~~~ 380 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE--WLRKKS--VVGNP 380 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH--HHhhCC--CCCCC
Confidence 88888876666677888888888888888887778888888888888888887652110 11111 222211 23333
Q ss_pred CCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCccccc-ceEECCCCcccCC
Q 004704 471 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV-TGLDLSCNQLTGE 549 (735)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~LdLs~N~l~~~ 549 (735)
.++.+....++.+....... ++.-.. ........ ..-...++-+ +....|++.++ .
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~--------~~c~~~----------ee~~~~~s----~~cP~~c~c~~tVvRcSnk~lk-~ 437 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGD--------FRCGGP----------EELGCLTS----SPCPPPCTCLDTVVRCSNKLLK-L 437 (498)
T ss_pred CCCCCchhccccchhccccc--------cccCCc----------cccCCCCC----CCCCCCcchhhhhHhhcccchh-h
Confidence 33433333333332221110 000000 00000000 0000111112 12345555555 5
Q ss_pred CCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccC
Q 004704 550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 616 (735)
Q Consensus 550 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 616 (735)
+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus 438 lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 438 LPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 565554 34567788888888 56665 66777 8888888888766777888888888888876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.3e-23 Score=247.19 Aligned_cols=318 Identities=21% Similarity=0.223 Sum_probs=161.3
Q ss_pred CChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCccccc
Q 004704 183 LPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYM 262 (735)
Q Consensus 183 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 262 (735)
+|..+....++|+.|.+.++.+. .+|..+ ...+|+.|++++|++. .++..+ ..+++|+.|+++++.....+| .+.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls 654 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLS 654 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccc
Confidence 33333332234455555444443 344433 2344555555554443 333322 234445555554443222222 244
Q ss_pred CCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCE
Q 004704 263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI 342 (735)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 342 (735)
.+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .+.+ |+.|++++|......|.. ..+|++
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L~~L~Lsgc~~L~~~p~~---~~nL~~ 729 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-LYRLNLSGCSRLKSFPDI---STNISW 729 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-CCEEeCCCCCCccccccc---cCCcCe
Confidence 44455555555444333444444445555555555443333444332 2222 555555554333333321 234455
Q ss_pred EEcccCCCCccCCCccCCCCccEEEccCCccc-------ccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704 343 LDISENRLSGPIASSLNLSSVEHLSLQKNALN-------GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 415 (735)
Q Consensus 343 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 415 (735)
|++++|.+.. +|....+++|+.|.+.++... ...+.....+++|+.|++++|...+.+|.+++++++|+.|+
T Consensus 730 L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 5555554432 222224444555544442211 11111222345677777777766666777777777777777
Q ss_pred ccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccc
Q 004704 416 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTM 495 (735)
Q Consensus 416 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (735)
+++|...+.+|..+ .+++|+.|++++|.....+|.
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-------------------------------------------- 843 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-------------------------------------------- 843 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--------------------------------------------
Confidence 77765444556544 566777777776643322221
Q ss_pred cchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCc
Q 004704 496 FGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP 575 (735)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 575 (735)
..++++.|+|++|.++ .+|..+..+++|+.|+|++|.--..+|
T Consensus 844 ------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 844 ------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred ------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccC
Confidence 1135666777777777 677777777778888877743333566
Q ss_pred ccccCcCCCCEEeCCCCc
Q 004704 576 ESFSNLKMIESLDISYNK 593 (735)
Q Consensus 576 ~~~~~l~~L~~LdLs~N~ 593 (735)
..+..+++|+.+++++|.
T Consensus 887 ~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 887 LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccccCCCeeecCCCc
Confidence 667777777777777774
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-26 Score=225.12 Aligned_cols=279 Identities=19% Similarity=0.201 Sum_probs=211.1
Q ss_pred CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEE
Q 004704 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL 99 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 99 (735)
+.-+.++|..|+|+.+.|.+|+.+++||.||||+|+|+ .|...+|.+++.|..|.+-+++.+..++..+|..+..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35688999999999887889999999999999999998 45558899999999999998888889999999999999999
Q ss_pred EeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcc------------cCcCCcCCCC
Q 004704 100 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG------------ILQLPKAKHD 167 (735)
Q Consensus 100 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~~ 167 (735)
.+.-|++.-...++|..++++..|.+.+|.+. .++...+..+..++++.+..|.+.. ..+..++...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 99999999888899999999999999999998 8888777889999999999887431 1122233333
Q ss_pred CcCEEEccCCcCCCcCChhHHH-hcccCcEEECcCCcCCCCCC-cccCCCCCCCEEECCCccccCccchhhhhCCCCCCE
Q 004704 168 FLHHLDISCNNFRGKLPHNMGV-ILQKLMYMDISKNCFEGNIP-YSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL 245 (735)
Q Consensus 168 ~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 245 (735)
......+.+.++. +++..-+. ....+.+--.+.+...+.-| ..|+.+++|+.|+|++|+++ .+.+..|.+...+++
T Consensus 225 c~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 225 CVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQE 302 (498)
T ss_pred ecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhh
Confidence 3333344444444 33333222 11122221223333333333 34778888888888888887 566677788888888
Q ss_pred EEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccC
Q 004704 246 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS 302 (735)
Q Consensus 246 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 302 (735)
|.|..|++.......|.++..|++|+|++|+|+...|.+|..+.+|.+|.+-.|.+.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888888888777777888888888888888888777888888888888888877664
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=9.6e-23 Score=244.18 Aligned_cols=341 Identities=20% Similarity=0.209 Sum_probs=256.9
Q ss_pred CCCCCCCCCeeEEEeeCCC------CCCCCchhhhCCC-CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccC
Q 004704 87 TENWLPTSQLIVLGLTKCN------LNGSYPDFLLHQY-HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGIL 159 (735)
Q Consensus 87 ~~~~~~~~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 159 (735)
..+|..+.+|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+...
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L- 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKL- 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccc-
Confidence 3456777788888776553 2234566666654 5888888888886 788765 568888899988887754
Q ss_pred cCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhC
Q 004704 160 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239 (735)
Q Consensus 160 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 239 (735)
+..+..+++|+.|+++++.....+|. +. .+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|... +
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~ 702 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--N 702 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--C
Confidence 45567788889999988764446774 33 36889999998887666788888889999999998876555777654 6
Q ss_pred CCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCC------CCCchhhhhc
Q 004704 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSG------HIPHWMGNFS 313 (735)
Q Consensus 240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~------~~p~~~~~~~ 313 (735)
+++|+.|++++|.....+|.. .++|++|++++|.+. .+|..+ .+++|++|++.++.... .++......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 888999999888655555532 467888999998886 566554 57788888887643210 1112222233
Q ss_pred ccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCC
Q 004704 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 393 (735)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 393 (735)
.+|+.|++++|.....+|..+.++++|+.|++++|...+.+|....+++|+.|++++|.....+|.. .++|+.|+++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 4599999999988778899999999999999999865556666668899999999998765555543 3679999999
Q ss_pred CCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCc
Q 004704 394 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNK 444 (735)
Q Consensus 394 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 444 (735)
+|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99998 789999999999999999965544678888899999999999985
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=7.2e-22 Score=219.07 Aligned_cols=81 Identities=31% Similarity=0.335 Sum_probs=48.9
Q ss_pred ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704 535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 614 (735)
Q Consensus 535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 614 (735)
+|+.|++++|+++ .+|... ++|+.|++++|++++ +|... .+|+.|++++|+++ .+|..+..++.|+.|+++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 3455666666666 344332 456666666666663 45432 34566667777666 566666666667777777
Q ss_pred cCcCcccCCC
Q 004704 615 YNNLSGRTPD 624 (735)
Q Consensus 615 ~N~l~~~~p~ 624 (735)
+|+|+|.+|.
T Consensus 454 ~N~Ls~~~~~ 463 (788)
T PRK15387 454 GNPLSERTLQ 463 (788)
T ss_pred CCCCCchHHH
Confidence 7776665543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=5.9e-21 Score=211.84 Aligned_cols=263 Identities=24% Similarity=0.297 Sum_probs=131.7
Q ss_pred CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEE
Q 004704 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD 198 (735)
Q Consensus 119 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 198 (735)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++.+.. .+++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence 3556777777776 6666543 356677777776665421 2456666666666666 45532 24666666
Q ss_pred CcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccC
Q 004704 199 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS 278 (735)
Q Consensus 199 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 278 (735)
+++|.++ .+|.. .+.|+.|++++|+++ .+|. ..++|+.|++++|.+++ +|.. ..+|+.|++++|.++
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence 6666665 34432 244556666666665 3443 13456666666666653 2221 234555566666555
Q ss_pred ccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc
Q 004704 279 GKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL 358 (735)
Q Consensus 279 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 358 (735)
.+|.. ..+|+.|++++|+++ .+|.. +.+|+.|++++|++++ +|... .+|+.|++++|++++.+. .
T Consensus 336 -~LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l~---~~L~~LdLs~N~Lt~LP~-l- 400 (788)
T PRK15387 336 -SLPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPALP---SGLKELIVSGNRLTSLPV-L- 400 (788)
T ss_pred -ccccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Ccccc---cccceEEecCCcccCCCC-c-
Confidence 23321 135556666666655 34431 2235555555555552 33221 345555555555543221 1
Q ss_pred CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchh
Q 004704 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQ 428 (735)
Q Consensus 359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 428 (735)
.++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..
T Consensus 401 -~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 401 -PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred -ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 2344444444444442 2221 123444444444444 34444444444444444444444444433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.3e-19 Score=202.78 Aligned_cols=222 Identities=21% Similarity=0.335 Sum_probs=87.8
Q ss_pred CcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEcc
Q 004704 194 LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFE 273 (735)
Q Consensus 194 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 273 (735)
...|+++++.++ .+|..+. ++|+.|++++|+++ .+|..++ .+|++|++++|.++. +|..+ .++|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence 344444444444 2333332 24444444444444 3443321 244444444444442 22222 1234444444
Q ss_pred ccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCcc
Q 004704 274 NNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP 353 (735)
Q Consensus 274 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 353 (735)
+|.+. .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++|++++ +|..+. ++|+.|++++|+++..
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC
Confidence 44444 3333221 24444444444444 3333221 124444444444442 222221 2344444444444322
Q ss_pred CCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCC
Q 004704 354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ 433 (735)
Q Consensus 354 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 433 (735)
+... .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 1111 1334444444444432 222221 34444444444444 2333332 34444555444444 2333322 1
Q ss_pred CCCEEECcCCcCC
Q 004704 434 KLAMMDLSRNKFS 446 (735)
Q Consensus 434 ~L~~L~Ls~N~l~ 446 (735)
.|+.|++++|+++
T Consensus 389 sL~~LdLs~N~L~ 401 (754)
T PRK15370 389 ALQIMQASRNNLV 401 (754)
T ss_pred HHHHHhhccCCcc
Confidence 3444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.6e-19 Score=201.97 Aligned_cols=202 Identities=24% Similarity=0.400 Sum_probs=124.2
Q ss_pred CCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEe
Q 004704 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296 (735)
Q Consensus 217 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 296 (735)
+...|+++++.++ .+|..+ .+.|+.|++++|.++. +|..+ .++|++|++++|+++ .+|..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4567888888777 566544 3467888888888774 44433 247888888888777 4555442 46778888
Q ss_pred eCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCccccc
Q 004704 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 376 (735)
Q Consensus 297 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 376 (735)
++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++.+... .++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc-
Confidence 888777 6666543 34777888877777 3555443 46777777777776533221 2356666666666663
Q ss_pred CcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCC
Q 004704 377 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 446 (735)
Q Consensus 377 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 446 (735)
+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 23322 245666666666665 3454442 46666666666665 3444432 45666666666665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=9.8e-19 Score=182.58 Aligned_cols=208 Identities=23% Similarity=0.255 Sum_probs=94.5
Q ss_pred CcCCCCCCCC-ccccccCCCCCCCEEeCCCCcCCCC----cchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeee
Q 004704 1 MNLERNFIGS-PLITCLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLL 75 (735)
Q Consensus 1 L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 75 (735)
|+|..+.+++ .....|..+++|++|+++++.++.. ++..+...+.|++|+++++.+.+ .+.. +
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~-~---------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRG-L---------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchH-H----------
Confidence 4556666653 2344555566666666666666432 33444555566666666665532 1100 0
Q ss_pred cccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCC---CCEEEccCCcCcccC----chHHHhCC-CCCcE
Q 004704 76 LSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYH---LKYLDLSHNKLVGNF----PTWLLRNN-PKLEV 147 (735)
Q Consensus 76 L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~~~----p~~~~~~l-~~L~~ 147 (735)
......+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|++++.. ...+ ..+ ++|+.
T Consensus 71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~ 141 (319)
T cd00116 71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEK 141 (319)
T ss_pred --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceE
Confidence 000001223445555555555555444444443333 666666666655211 1111 133 55555
Q ss_pred EECcCCcCccc----CcCCcCCCCCcCEEEccCCcCCCcCChhHHHh---cccCcEEECcCCcCCCC----CCcccCCCC
Q 004704 148 LLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI---LQKLMYMDISKNCFEGN----IPYSAGEMK 216 (735)
Q Consensus 148 L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~----~~~~l~~l~ 216 (735)
|++++|.+++. ....+..+++|++|++++|.+++.....+... +++|++|++++|.+.+. ++..+..++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 55555555521 11223344455555555555543221122111 23555555555544321 122233444
Q ss_pred CCCEEECCCcccc
Q 004704 217 ELSLLDLSRNYFS 229 (735)
Q Consensus 217 ~L~~L~L~~n~l~ 229 (735)
+|++|++++|.++
T Consensus 222 ~L~~L~ls~n~l~ 234 (319)
T cd00116 222 SLEVLNLGDNNLT 234 (319)
T ss_pred CCCEEecCCCcCc
Confidence 5555555555444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.7e-18 Score=180.77 Aligned_cols=204 Identities=25% Similarity=0.315 Sum_probs=95.2
Q ss_pred CCCCCEEEccCCCCCCcCcccccCCCC---CCEEEccccccCc----cccccccCC-CCCCEEEeeCCccCCCC----Cc
Q 004704 240 CFSLELLDLSNNNFEGQFFSEYMNLTR---LRHLYFENNNFSG----KIKDGLLSS-TSLQVLDISNNMLSGHI----PH 307 (735)
Q Consensus 240 l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~l~~~-~~L~~L~l~~n~l~~~~----p~ 307 (735)
+++|+.|++++|.+.+..+..+..+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++.. +.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 445555555555554333333333322 5555555555442 112223333 55555555555555321 11
Q ss_pred hhhhhcccCcEEEcCCCcCCCC----CCccCCCCCCCCEEEcccCCCCccCCC----cc-CCCCccEEEccCCcccccCc
Q 004704 308 WMGNFSSELEILSMSKNHLEGN----VPVQLNNLERLRILDISENRLSGPIAS----SL-NLSSVEHLSLQKNALNGLIP 378 (735)
Q Consensus 308 ~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~-~l~~L~~L~l~~n~l~~~~~ 378 (735)
.+..+.. |++|++++|.+++. ++..+..+++|++|++++|.+.+.... .+ .+++|++|++++|.+++...
T Consensus 160 ~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 160 ALRANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 2222223 55555555555421 222233344566666665555432111 11 34555666666555553221
Q ss_pred cccc-----CCCCCcEEeCCCCcccc----cCChhhhCCCCccEEEccCCcCCCC----CchhhhcC-CCCCEEECcCCc
Q 004704 379 GELF-----RSCKLVTLNLRDNTFSG----RIPHQINEHSNLRFLLLGGNHLQGP----IPDQLCQL-QKLAMMDLSRNK 444 (735)
Q Consensus 379 ~~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~Ls~N~ 444 (735)
..+. ..+.|+.|++++|.++. .+...+..+++|+++++++|.+... ....+... +.|+.+++.+|+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 1111 12566666666666641 2233444456666666666666633 22233333 456666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2e-19 Score=155.41 Aligned_cols=90 Identities=28% Similarity=0.507 Sum_probs=63.4
Q ss_pred CCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCC
Q 004704 354 IASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ 433 (735)
Q Consensus 354 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 433 (735)
++..+.+...+.|.+++|+++ .+|+.+..+.+|+.|++.+|+|. .+|..+..++.|+.|+++-|++. ..|..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 344456667777777777776 44556777777777777777776 66777777777777777777776 6677777777
Q ss_pred CCCEEECcCCcCC
Q 004704 434 KLAMMDLSRNKFS 446 (735)
Q Consensus 434 ~L~~L~Ls~N~l~ 446 (735)
.|+.||+++|++.
T Consensus 103 ~levldltynnl~ 115 (264)
T KOG0617|consen 103 ALEVLDLTYNNLN 115 (264)
T ss_pred hhhhhhccccccc
Confidence 7777777777665
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-18 Score=150.71 Aligned_cols=181 Identities=24% Similarity=0.430 Sum_probs=154.6
Q ss_pred ccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccc
Q 004704 381 LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460 (735)
Q Consensus 381 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 460 (735)
+..+...+.|-+++|+++ .+|..+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~---- 101 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF---- 101 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC----
Confidence 456677889999999998 77888999999999999999998 78889999999999999999986 778877664
Q ss_pred cccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEE
Q 004704 461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD 540 (735)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 540 (735)
+.|+.||
T Consensus 102 -------------------------------------------------------------------------p~levld 108 (264)
T KOG0617|consen 102 -------------------------------------------------------------------------PALEVLD 108 (264)
T ss_pred -------------------------------------------------------------------------chhhhhh
Confidence 4566799
Q ss_pred CCCCcccC-CCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCc
Q 004704 541 LSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619 (735)
Q Consensus 541 Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 619 (735)
|++|++.. ..|..|..+..|+.|+|+.|.+. .+|..++++++||.|.+..|.+. .+|.+++.++.|+.|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 99998864 67888999999999999999999 78888999999999999999998 79999999999999999999999
Q ss_pred ccCCCCCCCCcc---CCcccCCCCCCC
Q 004704 620 GRTPDKGQFATF---DESSYRGNPSLC 643 (735)
Q Consensus 620 ~~~p~~~~~~~~---~~~~~~gN~~lc 643 (735)
-..|+.+++.-. .....+.|||.-
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 988887665433 233456788764
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1.4e-15 Score=170.15 Aligned_cols=117 Identities=37% Similarity=0.609 Sum_probs=104.5
Q ss_pred ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704 535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 614 (735)
Q Consensus 535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 614 (735)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCCCC--CCCCccCCcccCCCCCCCCccccCCC
Q 004704 615 YNNLSGRTPDK--GQFATFDESSYRGNPSLCAWLIQQKY 651 (735)
Q Consensus 615 ~N~l~~~~p~~--~~~~~~~~~~~~gN~~lc~~~~~~~~ 651 (735)
+|+++|.+|.. ..+.......+.||+++|+.+....|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999973 22233445678999999986543444
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=1.5e-14 Score=148.07 Aligned_cols=171 Identities=30% Similarity=0.509 Sum_probs=92.3
Q ss_pred cEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCC
Q 004704 364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443 (735)
Q Consensus 364 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 443 (735)
...+++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|++++|+.|++. .+|..++.|+ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34445555554 34555555555555555555555 55555555555666666666655 4555555554 555556666
Q ss_pred cCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecc
Q 004704 444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN 523 (735)
Q Consensus 444 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 523 (735)
+++ .+|+.++.
T Consensus 154 kl~-~lp~~ig~-------------------------------------------------------------------- 164 (722)
T KOG0532|consen 154 KLT-SLPEEIGL-------------------------------------------------------------------- 164 (722)
T ss_pred ccc-cCCccccc--------------------------------------------------------------------
Confidence 554 44443331
Q ss_pred ccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcccc
Q 004704 524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT 603 (735)
Q Consensus 524 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 603 (735)
...|..||.++|++. .+|..++.+.+|+.|++..|++. ..|+.+..| .|..||+|.|+++ .||-.|.
T Consensus 165 ---------~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 165 ---------LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred ---------chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhh
Confidence 133444555555555 45555555555555555555555 344444433 2555555655555 4555555
Q ss_pred CCCCCCeEEcccCcCcc
Q 004704 604 ALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 604 ~l~~L~~L~ls~N~l~~ 620 (735)
+|..|++|-|.+|+|+.
T Consensus 232 ~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhheeeeeccCCCCC
Confidence 55555555555555543
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=5.6e-12 Score=135.43 Aligned_cols=198 Identities=35% Similarity=0.506 Sum_probs=121.0
Q ss_pred EEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCC-CCcEEeCCCCcccccCChhhhCCCCccEEEccCCc
Q 004704 342 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSC-KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 420 (735)
Q Consensus 342 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 420 (735)
.++++.|.+...+......+.++.|++.+|.++.. +....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 45555555544444434455666666666666633 33344442 6777777777776 455566677777777777777
Q ss_pred CCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhh
Q 004704 421 LQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWR 500 (735)
Q Consensus 421 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (735)
+. .+|......+.|+.|++++|++. .+|.....
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~--------------------------------------------- 207 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL--------------------------------------------- 207 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh---------------------------------------------
Confidence 76 45555546677777777777775 33332110
Q ss_pred hhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccC
Q 004704 501 WLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN 580 (735)
Q Consensus 501 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 580 (735)
...|+++++++|... .++..+..+..+..|.+++|++. ..+..++.
T Consensus 208 --------------------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 208 --------------------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred --------------------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence 123555666666443 45556666777777777777766 34566677
Q ss_pred cCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 581 LKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 581 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
+++++.|++++|+++ .++. +..+..++.|++++|.++...|.
T Consensus 254 l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 254 LSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 777777777777777 3333 66677777777777777666554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=2.2e-13 Score=139.76 Aligned_cols=193 Identities=28% Similarity=0.447 Sum_probs=155.8
Q ss_pred CCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEc
Q 004704 242 SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSM 321 (735)
Q Consensus 242 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l 321 (735)
.-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|++++++.|+++ .+|..++.++ |+.|-+
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIV 150 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEE
Confidence 3445677777777 56677777778888888888887 77888888889999999999998 8888888876 899999
Q ss_pred CCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccC
Q 004704 322 SKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRI 401 (735)
Q Consensus 322 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 401 (735)
++|+++ .+|..++....|..||.+.|.+...++...++.+|+.|.+..|++.. +|+.+. .-.|..||++.|+++ .+
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ec
Confidence 999988 67888888889999999999988777777788999999999999874 456666 446899999999998 88
Q ss_pred ChhhhCCCCccEEEccCCcCCCCCchhhhcCCC---CCEEECcCCc
Q 004704 402 PHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQK---LAMMDLSRNK 444 (735)
Q Consensus 402 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~N~ 444 (735)
|..|..+..|++|-|.+|.++ ..|..++-... .++|+..-|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999999999999999999998 56766664433 3456666553
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=2.2e-11 Score=130.87 Aligned_cols=201 Identities=30% Similarity=0.449 Sum_probs=140.2
Q ss_pred EEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCC-CccEEEccCCcccccCcccccCCCCCcEEeCCCCc
Q 004704 318 ILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLS-SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT 396 (735)
Q Consensus 318 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 396 (735)
.++...+.+.. ....+...+.++.+++.+|.++...+...... +|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 35555555431 12223344567777777777765554444443 7777777777776 334567788888888888888
Q ss_pred ccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcc
Q 004704 397 FSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 476 (735)
Q Consensus 397 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 476 (735)
++ .+|...+..++|+.|++++|++. .+|........|+++++++|++. ..+..+.+
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~--------------------- 230 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN--------------------- 230 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh---------------------
Confidence 88 56666557788999999999988 67766666677889999988632 22222222
Q ss_pred cchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccc
Q 004704 477 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 556 (735)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 556 (735)
+..+..+.+++|++. .++..++.
T Consensus 231 --------------------------------------------------------~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 231 --------------------------------------------------------LKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred --------------------------------------------------------cccccccccCCceee-eccchhcc
Confidence 234555678888877 45778888
Q ss_pred cccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcccc
Q 004704 557 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT 603 (735)
Q Consensus 557 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 603 (735)
+++++.|++++|.++. ++. ++.+.+++.||+++|.++...|....
T Consensus 254 l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 254 LSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhhc
Confidence 9999999999999994 444 89999999999999999876665443
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=3.4e-11 Score=135.15 Aligned_cols=90 Identities=32% Similarity=0.541 Sum_probs=83.0
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCC-CCCCeEE
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL-NFLSIFN 612 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L~ 612 (735)
++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 578889999999999999999999999999999999999999999999999999999999999999998864 4678999
Q ss_pred cccCcCcccCC
Q 004704 613 VSYNNLSGRTP 623 (735)
Q Consensus 613 ls~N~l~~~~p 623 (735)
+++|...+..|
T Consensus 522 ~~~N~~lc~~p 532 (623)
T PLN03150 522 FTDNAGLCGIP 532 (623)
T ss_pred ecCCccccCCC
Confidence 99998766555
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=6e-12 Score=122.25 Aligned_cols=238 Identities=21% Similarity=0.215 Sum_probs=148.9
Q ss_pred ccCCCCCCCEEeCCCCcCCCC----cchhhhCCCCCCEEeCCCCcccc----cCCh------hhhhcCCCCCeeeccccc
Q 004704 15 CLKNLTRLKILDISSNQLNGS----LPSVISNLTSLEYLDLSHNNFEG----MFPL------SSLANHSKLEGLLLSTRN 80 (735)
Q Consensus 15 ~~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~~~------~~~~~l~~L~~L~L~~~~ 80 (735)
.+-.+..++.++||+|.+... +...+.+.++|+..++|+- ++| .+|. .++.++++|++++||+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344566777788888777632 3344556677777777642 222 2331 235566777777777776
Q ss_pred ccccccCC---CCCCCCCeeEEEeeCCCCCCCCch-------------hhhCCCCCCEEEccCCcCcccCc----hHHHh
Q 004704 81 NTLHVKTE---NWLPTSQLIVLGLTKCNLNGSYPD-------------FLLHQYHLKYLDLSHNKLVGNFP----TWLLR 140 (735)
Q Consensus 81 ~~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~ 140 (735)
+....... -+..+..|++|.|.+|.+...--. ....-+.|++++.++|++. ..+ ...++
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~ 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQ 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHH
Confidence 64443322 224567788888888877632111 1234467888888888875 322 23456
Q ss_pred CCCCCcEEECcCCcCccc----CcCCcCCCCCcCEEEccCCcCCCcCChhHHHh---cccCcEEECcCCcCCCCCCccc-
Q 004704 141 NNPKLEVLLLKNNSFSGI----LQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI---LQKLMYMDISKNCFEGNIPYSA- 212 (735)
Q Consensus 141 ~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~l- 212 (735)
..+.|+.+.+..|.|... ....+..+++|+.|||.+|.++......+... +++|++|++++|.+...-..++
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 678888888888877532 23446678888888888888764433333322 4578888888887765333222
Q ss_pred ----CCCCCCCEEECCCccccCccch---hhhhCCCCCCEEEccCCCCC
Q 004704 213 ----GEMKELSLLDLSRNYFSGGLSQ---SVVTGCFSLELLDLSNNNFE 254 (735)
Q Consensus 213 ----~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~ 254 (735)
...+.|++|.+.+|.++..-.. ......+.|+.|+|++|.+.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2467899999999988732111 11223678899999999883
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=8.1e-12 Score=124.62 Aligned_cols=216 Identities=26% Similarity=0.287 Sum_probs=112.0
Q ss_pred CCCCCCCEEeCCCCcCCCCcc--hhhhCCCCCCEEeCCCCcccccCCh-hhhhcCCCCCeeecccccccccccCCCCCCC
Q 004704 17 KNLTRLKILDISSNQLNGSLP--SVISNLTSLEYLDLSHNNFEGMFPL-SSLANHSKLEGLLLSTRNNTLHVKTENWLPT 93 (735)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 93 (735)
+++++|+...|.+..+. ..+ +....|++++.||||+|-|+.-.+. .....+++|+.|+++.|.+........-.
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-- 194 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh--
Confidence 46777888888877766 333 3566788888888888877643332 22345666666666655543332222111
Q ss_pred CCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEE
Q 004704 94 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLD 173 (735)
Q Consensus 94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 173 (735)
.+++|+.|.|+.|.++-.--.++...+|+|+.|+|..|....+.......++.|++||
T Consensus 195 ----------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 195 ----------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD 252 (505)
T ss_pred ----------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence 3445566666666554222233334566667777666653333334444556666666
Q ss_pred ccCCcCCCcCC-hhHHHhcccCcEEECcCCcCCCC-CCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCC
Q 004704 174 ISCNNFRGKLP-HNMGVILQKLMYMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNN 251 (735)
Q Consensus 174 Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 251 (735)
|++|++. ..+ ...-..++.|+.|+++.|.+... +|+. . ..+.....++|++|++..|
T Consensus 253 Ls~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-------~-------------s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 253 LSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV-------E-------------SLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred ccCCccc-ccccccccccccchhhhhccccCcchhcCCCc-------c-------------chhhhcccccceeeecccC
Confidence 6666655 222 11112255666666666655421 1111 0 0000123445666666666
Q ss_pred CCCCc-CcccccCCCCCCEEEccccccC
Q 004704 252 NFEGQ-FFSEYMNLTRLRHLYFENNNFS 278 (735)
Q Consensus 252 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 278 (735)
++... .-..+..+++|+.|.+..|.+.
T Consensus 312 ~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 312 NIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccccccchhhccchhhhhhccccccc
Confidence 55321 1123344556666666666665
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=8.9e-12 Score=118.03 Aligned_cols=88 Identities=25% Similarity=0.289 Sum_probs=63.7
Q ss_pred ccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccccc-CCccccCCCCCCeE
Q 004704 533 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ-IPPQLTALNFLSIF 611 (735)
Q Consensus 533 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L 611 (735)
+++|+.||||+|.++ .+-..=..+.+.++|+|++|.|.. . ..++++-+|..||+++|+|... --..++++|.|+++
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 356777777777776 444444566777888888888773 2 3477788888888888888643 23467888999999
Q ss_pred EcccCcCcccCC
Q 004704 612 NVSYNNLSGRTP 623 (735)
Q Consensus 612 ~ls~N~l~~~~p 623 (735)
.+.+|++++.+.
T Consensus 405 ~L~~NPl~~~vd 416 (490)
T KOG1259|consen 405 RLTGNPLAGSVD 416 (490)
T ss_pred hhcCCCccccch
Confidence 999999887654
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.5e-11 Score=122.73 Aligned_cols=162 Identities=20% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCCCeeEEEeeCCCCCCCCc-hhhhCCCCCCEEEccCCcCcccCc-hHHHhCCCCCcEEECcCCcCcccCcCC-cCCCCC
Q 004704 92 PTSQLIVLGLTKCNLNGSYP-DFLLHQYHLKYLDLSHNKLVGNFP-TWLLRNNPKLEVLLLKNNSFSGILQLP-KAKHDF 168 (735)
Q Consensus 92 ~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~ 168 (735)
+..+|+++.|.++.+..... .....|++++.||||.|-+..-.| ..+...+|+|+.|+++.|++....... -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34578888888887763322 456778888899998887752211 234567888888888888776432211 124566
Q ss_pred cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccc-hhhhhCCCCCCEEE
Q 004704 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS-QSVVTGCFSLELLD 247 (735)
Q Consensus 169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~ 247 (735)
|+.|.++.|.++..--..+...+|+|+.|++..|..-........-+..|++|||++|.+.. .+ -.....++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 77777777776633333344446667777776664222222233344556666666655542 22 11122344555555
Q ss_pred ccCCCCC
Q 004704 248 LSNNNFE 254 (735)
Q Consensus 248 L~~n~l~ 254 (735)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 5555444
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=2e-11 Score=118.62 Aligned_cols=252 Identities=21% Similarity=0.152 Sum_probs=128.4
Q ss_pred hhhhCCCCCCEEeCCCCcccccCC---hhhhhcCCCCCeeecccccccccccC----------CCCCCCCCeeEEEeeCC
Q 004704 38 SVISNLTSLEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNNTLHVKT----------ENWLPTSQLIVLGLTKC 104 (735)
Q Consensus 38 ~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~----------~~~~~~~~L~~L~L~~n 104 (735)
+.......++.++||+|.|..... ...+.+.++|+..++++- +++.... .++..+++|++|+|++|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 445677899999999998842211 134567778888887742 1111111 13334445555555555
Q ss_pred CCCCCCch----hhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCC
Q 004704 105 NLNGSYPD----FLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFR 180 (735)
Q Consensus 105 ~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 180 (735)
.+....+. .+.++..|++|.|.+|.+.-.-...+.+. |..|. .......-+.|+++..++|++.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a---l~~l~---------~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA---LFELA---------VNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH---HHHHH---------HHhccCCCcceEEEEeeccccc
Confidence 55433222 22344555555555554421100000000 00000 0111223455666666666654
Q ss_pred CcCCh---hHHHhcccCcEEECcCCcCCC----CCCcccCCCCCCCEEECCCccccCccchh---hhhCCCCCCEEEccC
Q 004704 181 GKLPH---NMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLSRNYFSGGLSQS---VVTGCFSLELLDLSN 250 (735)
Q Consensus 181 ~~~~~---~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~ 250 (735)
..-.. ..++..+.|+.+.++.|.|.. .+...+..+++|+.|||..|-++...... .+...++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 22111 123334566666666665532 12234556677777777777665322211 223345677777777
Q ss_pred CCCCCcCcccc-----cCCCCCCEEEccccccCcc----ccccccCCCCCCEEEeeCCccC
Q 004704 251 NNFEGQFFSEY-----MNLTRLRHLYFENNNFSGK----IKDGLLSSTSLQVLDISNNMLS 302 (735)
Q Consensus 251 n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~ 302 (735)
|.+......+| ...++|+.|.+.+|.++.. +...+...+.|..|++++|++.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 77664333332 2356777777777777632 2223445677888888888873
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=5.2e-11 Score=112.92 Aligned_cols=129 Identities=29% Similarity=0.372 Sum_probs=69.7
Q ss_pred CCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEE
Q 004704 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLS 367 (735)
Q Consensus 288 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 367 (735)
...|+++|+++|.|+ .+.+++.-.|. ++.|++++|.+... ..+..+++|+.||+++|.++........+.+.+.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccc-eeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 355666666666666 55555555554 66666666666532 125566666666666666654332222555666666
Q ss_pred ccCCcccccCcccccCCCCCcEEeCCCCccccc-CChhhhCCCCccEEEccCCcCC
Q 004704 368 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQ 422 (735)
Q Consensus 368 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 422 (735)
+++|.+... ..+..+-+|..||+++|+|... -...++++|.|+.+.|.+|++.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 666655432 2344445555555555555421 1123445555555555555554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=4.3e-10 Score=103.01 Aligned_cols=129 Identities=24% Similarity=0.201 Sum_probs=46.6
Q ss_pred CCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCc
Q 004704 116 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM 195 (735)
Q Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 195 (735)
+..++++|+|++|.|+ .+. .+...+.+|+.|++++|.++.+. .+..++.|++|++++|.++ .++..+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 4445677777777765 443 23224567777777777776653 4556788888888888887 66665555578888
Q ss_pred EEECcCCcCCCC-CCcccCCCCCCCEEECCCccccCcc--chhhhhCCCCCCEEEcc
Q 004704 196 YMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFSGGL--SQSVVTGCFSLELLDLS 249 (735)
Q Consensus 196 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~ 249 (735)
+|++++|++... .-..+..+++|+.|++.+|.++..- -..++..+++|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 888888888642 1234567888888888888876321 12334557777777653
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=9.6e-10 Score=100.70 Aligned_cols=122 Identities=24% Similarity=0.296 Sum_probs=41.0
Q ss_pred CcEEEcCCCcCCCCCCccCC-CCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704 316 LEILSMSKNHLEGNVPVQLN-NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 394 (735)
Q Consensus 316 L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 394 (735)
+++|++++|.|+.+ +.+. .+.+|+.|++++|.++.. .....++.|++|++++|+++...+.....+++|+.|++++
T Consensus 21 ~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 21 LRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccc--cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 56666666666532 1233 355666666666666532 2333566666667777766644222223467777777777
Q ss_pred CcccccC-ChhhhCCCCccEEEccCCcCCCCC---chhhhcCCCCCEEEC
Q 004704 395 NTFSGRI-PHQINEHSNLRFLLLGGNHLQGPI---PDQLCQLQKLAMMDL 440 (735)
Q Consensus 395 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L 440 (735)
|+|...- -..+..+++|+.|++.+|++.... ...+..+|+|+.||-
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7775321 134566777888888888776332 234667788887764
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=5.2e-10 Score=84.06 Aligned_cols=60 Identities=43% Similarity=0.592 Sum_probs=39.1
Q ss_pred cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcC
Q 004704 559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 618 (735)
Q Consensus 559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 618 (735)
+|++|++++|+++...++.|.++++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466666666666655555666666666666666666666666666666666666666654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.3e-09 Score=81.98 Aligned_cols=61 Identities=41% Similarity=0.576 Sum_probs=56.6
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcc
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKL 594 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 594 (735)
++|+.|++++|+++...+..|..+++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999966668899999999999999999988889999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=5e-10 Score=120.36 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=56.9
Q ss_pred cceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccccc---CCcc-ccCCCCCCeE
Q 004704 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ---IPPQ-LTALNFLSIF 611 (735)
Q Consensus 536 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---~p~~-l~~l~~L~~L 611 (735)
|+.+++++|.+. .++..+..+..+..|++++|++...- .+.....+..+.++.|.+... .... ....+.+...
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 566778888776 44466777778888888888877432 255666777777777776522 2222 4556777888
Q ss_pred EcccCcCcccCC
Q 004704 612 NVSYNNLSGRTP 623 (735)
Q Consensus 612 ~ls~N~l~~~~p 623 (735)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888887766554
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=5.4e-09 Score=119.95 Aligned_cols=126 Identities=29% Similarity=0.395 Sum_probs=61.1
Q ss_pred CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCc--CcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcE
Q 004704 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS--FSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196 (735)
Q Consensus 119 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 196 (735)
..+...+-+|.+. .++... .++.|++|-+..|. +..+....|..++.|++||+++|.--+.+|..++. +-+|++
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lry 599 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRY 599 (889)
T ss_pred heeEEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhc
Confidence 4445555555443 333221 34455555555553 33333333445555555555554433355555554 445555
Q ss_pred EECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccC
Q 004704 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250 (735)
Q Consensus 197 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 250 (735)
|+++++.++ .+|..+++++.|.+|++..+.-...+ ..+...+.+|++|.+..
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeec
Confidence 555555555 45555555555555555554433222 22333355555555544
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.2e-09 Score=117.51 Aligned_cols=246 Identities=27% Similarity=0.168 Sum_probs=138.5
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCee
Q 004704 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 97 (735)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 97 (735)
.+..++.+++..|.+.. +-..+..+++|+.|++.+|+|..... .+..+++|++|++++|.+....+ +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc--chhhhhcchheeccccccccccc---hhhccchh
Confidence 34555555566665552 22335555666666666666553221 14556666666666655543332 23344466
Q ss_pred EEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCC
Q 004704 98 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 177 (735)
Q Consensus 98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 177 (735)
.|++.+|.+... ..+..++.|+.+++++|.+. .+.......+.+++.+++.+|.+..+. .+..+..+..+++..|
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDN 218 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccc
Confidence 777777766632 23444677777777777776 443310236677777777777776543 2223334444567777
Q ss_pred cCCCcCChhHHHhcc--cCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCC
Q 004704 178 NFRGKLPHNMGVILQ--KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG 255 (735)
Q Consensus 178 ~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 255 (735)
.++..-+... +. .|+.+++++|.+. ..+..+..++.+..+++..|++... . -......+..+....|.+..
T Consensus 219 ~i~~~~~l~~---~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 219 KISKLEGLNE---LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL-E--GLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred cceeccCccc---chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc-c--cccccchHHHhccCcchhcc
Confidence 6652111111 12 3777888888776 3445667778888888888877621 1 12334556666666666542
Q ss_pred c---Ccc-cccCCCCCCEEEccccccCccc
Q 004704 256 Q---FFS-EYMNLTRLRHLYFENNNFSGKI 281 (735)
Q Consensus 256 ~---~~~-~~~~l~~L~~L~L~~n~l~~~~ 281 (735)
. ... .....+.++...+..|.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 292 SEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hhhhhccccccccccccccccccCcccccc
Confidence 1 111 1345677788888887766443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=2e-08 Score=115.39 Aligned_cols=59 Identities=25% Similarity=0.302 Sum_probs=37.0
Q ss_pred ccccceEECCCCcccCCCCccccccccCCeEeCCCCcCccc-CcccccCcCCCCEEeCCC
Q 004704 533 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS-IPESFSNLKMIESLDISY 591 (735)
Q Consensus 533 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~ 591 (735)
.++|+.|.+.++.....+.+....+..++.+-+..+.+.+. .-...++++++..+.+++
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 47788888887776656655666666676666777777655 233455555555544443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.1e-09 Score=102.16 Aligned_cols=180 Identities=23% Similarity=0.212 Sum_probs=125.3
Q ss_pred CCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCc-CCCcCChhHHHhcccCcE
Q 004704 118 YHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNN-FRGKLPHNMGVILQKLMY 196 (735)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~ 196 (735)
+.|++||||+..++..--..+...|.+|+.|.+.++++...+...+.+-.+|+.|+++.+. ++.....-++..|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588999998888755555566788899999999999988877788888899999998754 443333445566888999
Q ss_pred EECcCCcCCCCCCccc-C-CCCCCCEEECCCcccc--CccchhhhhCCCCCCEEEccCC-CCCCcCcccccCCCCCCEEE
Q 004704 197 MDISKNCFEGNIPYSA-G-EMKELSLLDLSRNYFS--GGLSQSVVTGCFSLELLDLSNN-NFEGQFFSEYMNLTRLRHLY 271 (735)
Q Consensus 197 L~L~~n~l~~~~~~~l-~-~l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 271 (735)
|+++-|.+....-..+ . --++|+.|++++++-. ..--..+...|++|..|||++| .++.....+|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9999887654221111 1 1256788888876421 1112234467888999999886 44545556677888888888
Q ss_pred ccccccCcccccc---ccCCCCCCEEEeeCC
Q 004704 272 FENNNFSGKIKDG---LLSSTSLQVLDISNN 299 (735)
Q Consensus 272 L~~n~l~~~~~~~---l~~~~~L~~L~l~~n 299 (735)
++.|.. .+|.. +...|+|.+|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 888864 34443 356678888887764
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.6e-09 Score=100.67 Aligned_cols=179 Identities=25% Similarity=0.248 Sum_probs=81.9
Q ss_pred CCCEEeCCCCcCCCC-cchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCC-CCCCCCCeeE
Q 004704 21 RLKILDISSNQLNGS-LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE-NWLPTSQLIV 98 (735)
Q Consensus 21 ~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~L~~ 98 (735)
.|++||||+..|+-. +-.-+..|++|+.|.+.++++.+.+. ..+++-.+|+.|+++.++....-... .+..|+.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 355555555555421 12233455555555555555554443 33555555555555554433222211 2244555555
Q ss_pred EEeeCCCCCCCCchhh-hC-CCCCCEEEccCCc--CcccCchHHHhCCCCCcEEECcCCc-CcccCcCCcCCCCCcCEEE
Q 004704 99 LGLTKCNLNGSYPDFL-LH-QYHLKYLDLSHNK--LVGNFPTWLLRNNPKLEVLLLKNNS-FSGILQLPKAKHDFLHHLD 173 (735)
Q Consensus 99 L~L~~n~l~~~~~~~l-~~-l~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ 173 (735)
|+|+.|.+.......+ .+ -++|+.|+|+++. +...--+.+.+.+++|.+|||++|. ++......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 5555555543322211 11 2345555555542 1111112233456666666666543 2222223344556666666
Q ss_pred ccCCcCCCcCChhHH--HhcccCcEEECcCC
Q 004704 174 ISCNNFRGKLPHNMG--VILQKLMYMDISKN 202 (735)
Q Consensus 174 Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n 202 (735)
++.|.. .+|..+. +..|.|.+|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 666542 2333221 12456666666554
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.50 E-value=7.4e-09 Score=87.10 Aligned_cols=86 Identities=23% Similarity=0.379 Sum_probs=44.1
Q ss_pred ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704 535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 614 (735)
Q Consensus 535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 614 (735)
.++.++|++|+++ .+|.++..++.|+.||++.|.+. ..|..+..|.+|-.||.-.|.+. +||..+---+.....++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 3444556666665 55555666666666666666665 45555555666666666665555 444332222222223334
Q ss_pred cCcCcccCC
Q 004704 615 YNNLSGRTP 623 (735)
Q Consensus 615 ~N~l~~~~p 623 (735)
++++.+..|
T Consensus 155 nepl~~~~~ 163 (177)
T KOG4579|consen 155 NEPLGDETK 163 (177)
T ss_pred CCcccccCc
Confidence 444444444
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.6e-07 Score=89.65 Aligned_cols=217 Identities=20% Similarity=0.160 Sum_probs=118.0
Q ss_pred cCCCCCCCEEeCCCCcCCCCcc-hhh-hCCCCCCEEeCCCCcccccCC-hhhhhcCCCCCeeecccccccccccCCCCCC
Q 004704 16 LKNLTRLKILDISSNQLNGSLP-SVI-SNLTSLEYLDLSHNNFEGMFP-LSSLANHSKLEGLLLSTRNNTLHVKTENWLP 92 (735)
Q Consensus 16 ~~~l~~L~~L~Ls~n~i~~~~p-~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 92 (735)
+.....++.|.+.++.|..+-. ..| ..++.++.+||.+|.|++--. .+.+.+++.|++|+++.|.+...+.... .+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-cc
Confidence 3344455566666666653322 123 357788899999998874322 1346788888888888887766665543 56
Q ss_pred CCCeeEEEeeCCCCC-CCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCE
Q 004704 93 TSQLIVLGLTKCNLN-GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHH 171 (735)
Q Consensus 93 ~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 171 (735)
..+|++|-|.+..+. ...-..+..++.++.|++|.|++. . +.+..+.+.... +.+++
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r-q--------------~n~Dd~c~e~~s-------~~v~t 177 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR-Q--------------LNLDDNCIEDWS-------TEVLT 177 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh-h--------------hccccccccccc-------hhhhh
Confidence 678888888877765 223344556777777777776442 1 112222111110 11222
Q ss_pred EEccCCcCCC-cCChhHHHhcccCcEEECcCCcCCCCC-CcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704 172 LDISCNNFRG-KLPHNMGVILQKLMYMDISKNCFEGNI-PYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249 (735)
Q Consensus 172 L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 249 (735)
+.+-.|...- .--..+...+|++..+.+..|.+...- -.....++.+.-|.|+.|++..-..-....++++|..|.++
T Consensus 178 lh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 178 LHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred hhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence 2222221100 000112233567777777777665321 22344556666677777776543333334566677777777
Q ss_pred CCCCCC
Q 004704 250 NNNFEG 255 (735)
Q Consensus 250 ~n~l~~ 255 (735)
++.+.+
T Consensus 258 ~~Pl~d 263 (418)
T KOG2982|consen 258 ENPLSD 263 (418)
T ss_pred CCcccc
Confidence 666553
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=1.2e-07 Score=89.39 Aligned_cols=217 Identities=22% Similarity=0.258 Sum_probs=109.8
Q ss_pred CCCCCCEEeCCCCcCCCCcchh----hhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCC
Q 004704 18 NLTRLKILDISSNQLNGSLPSV----ISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPT 93 (735)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 93 (735)
.+..++.+|||+|.|...-..+ +++-.+|+..++|.- ++|..-.....++. .-..++.+|
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~---------------~Ll~aLlkc 91 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLV---------------MLLKALLKC 91 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHH---------------HHHHHHhcC
Confidence 3566777777777776433333 344466666666542 22221100000000 000134555
Q ss_pred CCeeEEEeeCCCCCCCCch----hhhCCCCCCEEEccCCcCcccCc-----hHHH--------hCCCCCcEEECcCCcCc
Q 004704 94 SQLIVLGLTKCNLNGSYPD----FLLHQYHLKYLDLSHNKLVGNFP-----TWLL--------RNNPKLEVLLLKNNSFS 156 (735)
Q Consensus 94 ~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~p-----~~~~--------~~l~~L~~L~L~~n~l~ 156 (735)
+.|+.++|++|.+....|+ .+++.+.|++|.+++|.+- .+. ..++ .+-|.|++.....|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 6666666666666544443 3456667777777777653 221 1111 13466777777777665
Q ss_pred ccCc----CCcCCCCCcCEEEccCCcCCCcCChhHH-------HhcccCcEEECcCCcCCCC----CCcccCCCCCCCEE
Q 004704 157 GILQ----LPKAKHDFLHHLDISCNNFRGKLPHNMG-------VILQKLMYMDISKNCFEGN----IPYSAGEMKELSLL 221 (735)
Q Consensus 157 ~~~~----~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-------~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L 221 (735)
.-.. ..+.....|+++.+..|.|. |.++. ..+++|+.||+.+|-++-. +...+...+.|+.|
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 3211 12233356777777777765 33221 1256777777777766531 22334444556666
Q ss_pred ECCCccccCccchhhhhC-----CCCCCEEEccCCCCC
Q 004704 222 DLSRNYFSGGLSQSVVTG-----CFSLELLDLSNNNFE 254 (735)
Q Consensus 222 ~L~~n~l~~~~~~~~~~~-----l~~L~~L~L~~n~l~ 254 (735)
.+..|-++..-..+++.. .++|..|...+|.+.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 666666654333333321 245555555555444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=1.4e-08 Score=107.73 Aligned_cols=128 Identities=30% Similarity=0.279 Sum_probs=91.7
Q ss_pred CCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEE
Q 004704 119 HLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMD 198 (735)
Q Consensus 119 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 198 (735)
.|.+.+.+.|.+. .+.+.+ +-++.|+.|+|++|+++... .+..++.|++|||++|.+. .+|.--...+ +|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 4666777777775 444443 46788888889988888763 6677888888899888887 6665444434 488888
Q ss_pred CcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCC
Q 004704 199 ISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 254 (735)
Q Consensus 199 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 254 (735)
+++|.++. -..+.++++|+.||++.|-+.+.-.-.....+..|+.|.|.+|.+-
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888763 2356788888888888887775333333445667888888888764
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=2.7e-07 Score=87.03 Aligned_cols=204 Identities=20% Similarity=0.179 Sum_probs=115.9
Q ss_pred CcCCCCCCCCc----cccccCCCCCCCEEeCCCCcCC---CCcc-------hhhhCCCCCCEEeCCCCcccccCCh---h
Q 004704 1 MNLERNFIGSP----LITCLKNLTRLKILDISSNQLN---GSLP-------SVISNLTSLEYLDLSHNNFEGMFPL---S 63 (735)
Q Consensus 1 L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~---~~~p-------~~~~~l~~L~~L~Ls~n~l~~~~~~---~ 63 (735)
+|||+|.|..+ +...+.+-.+|+..++|.-... ..++ .++.+|++|+..+||.|.|....|. .
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d 114 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD 114 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence 48999999865 4456667789999998864322 2233 3567899999999999999776663 3
Q ss_pred hhhcCCCCCeeecccccccccccCC------------CCCCCCCeeEEEeeCCCCCCCCc----hhhhCCCCCCEEEccC
Q 004704 64 SLANHSKLEGLLLSTRNNTLHVKTE------------NWLPTSQLIVLGLTKCNLNGSYP----DFLLHQYHLKYLDLSH 127 (735)
Q Consensus 64 ~~~~l~~L~~L~L~~~~~~~~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~ 127 (735)
.+++.+.|.+|.+++|......... .....+.|+++....|++..-.. ..+.....|+++.+..
T Consensus 115 ~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q 194 (388)
T COG5238 115 LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ 194 (388)
T ss_pred HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee
Confidence 4677788888888866543222111 11334566777766666652111 1122334566666666
Q ss_pred CcCcccCc-----hHHHhCCCCCcEEECcCCcCcccC----cCCcCCCCCcCEEEccCCcCCCcCChhHHHh-----ccc
Q 004704 128 NKLVGNFP-----TWLLRNNPKLEVLLLKNNSFSGIL----QLPKAKHDFLHHLDISCNNFRGKLPHNMGVI-----LQK 193 (735)
Q Consensus 128 n~l~~~~p-----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-----l~~ 193 (735)
|.|.-.-- ..+ ..+.+|+.||+..|.++-.. ...+...+.|+.|.+.+|-++....+.++.. .++
T Consensus 195 NgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~ 273 (388)
T COG5238 195 NGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPN 273 (388)
T ss_pred cCcCcchhHHHHHHHH-HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCC
Confidence 65542100 111 24566666666666655322 2223344456666666665554444443322 234
Q ss_pred CcEEECcCCcCC
Q 004704 194 LMYMDISKNCFE 205 (735)
Q Consensus 194 L~~L~L~~n~l~ 205 (735)
|+.|-..+|.+.
T Consensus 274 l~~L~~~Yne~~ 285 (388)
T COG5238 274 LMPLPGDYNERR 285 (388)
T ss_pred ccccccchhhhc
Confidence 444444444443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=4.1e-07 Score=86.91 Aligned_cols=206 Identities=19% Similarity=0.132 Sum_probs=102.3
Q ss_pred CCCCCEEECCCccccCccch-hhhhCCCCCCEEEccCCCCCC--cCcccccCCCCCCEEEccccccCccccccc-cCCCC
Q 004704 215 MKELSLLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEG--QFFSEYMNLTRLRHLYFENNNFSGKIKDGL-LSSTS 290 (735)
Q Consensus 215 l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~~~~ 290 (735)
...++.+.+.++.|...-.. .+...++.++.+||..|.++. .+...+.++|.|+.|+++.|.+...+. .+ ....+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccc
Confidence 33455555656555432222 233456778888888888774 333445778888888888888774332 22 35568
Q ss_pred CCEEEeeCCccCCC-CCchhhhhcccCcEEEcCCCcCCC--CCCccCCCC-CCCCEEEcccCCCCc--cCCCcc-CCCCc
Q 004704 291 LQVLDISNNMLSGH-IPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNL-ERLRILDISENRLSG--PIASSL-NLSSV 363 (735)
Q Consensus 291 L~~L~l~~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~~-~l~~L 363 (735)
|+.|.+.+..+.-. ....+..+|. +++|+++.|.... ....+.... +.+.++.+..|.... ...... -++++
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~-vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPK-VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchh-hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 88888888776522 2223344554 7777777774321 111111111 133444443332110 000000 24455
Q ss_pred cEEEccCCcccccC-cccccCCCCCcEEeCCCCccccc-CChhhhCCCCccEEEccCCcCC
Q 004704 364 EHLSLQKNALNGLI-PGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQ 422 (735)
Q Consensus 364 ~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 422 (735)
..+.+..|.+...- ...+...+.+..|+|+.|+|..- .-+.+.+++.|..|.+++|++.
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 55555555444321 12223334444555555555321 1123444555555555555554
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=3.2e-08 Score=105.13 Aligned_cols=178 Identities=26% Similarity=0.313 Sum_probs=115.7
Q ss_pred ChhHHHhcccCcEEECcCCcCCCCCCcccCCC-CCCCEEECCCccccCccchhhhhCC----------CCCCEEEccCCC
Q 004704 184 PHNMGVILQKLMYMDISKNCFEGNIPYSAGEM-KELSLLDLSRNYFSGGLSQSVVTGC----------FSLELLDLSNNN 252 (735)
Q Consensus 184 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~l----------~~L~~L~L~~n~ 252 (735)
|-.++. +.+|+.|.+.+|.+.. ...+..+ ..|+.|-.. |.++ .+ ..++..| ..|.+.+.++|.
T Consensus 102 pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~-Al-~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLD-AL-RHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred Cceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHH-HH-HHHHHHhccccccchhhhhHhhhhcchhh
Confidence 556665 6788888888887652 1111111 123333221 2111 00 1111111 257778888888
Q ss_pred CCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCc
Q 004704 253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 332 (735)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~ 332 (735)
+. .+..++.-++.++.|+|++|+++.. +.+..++.|++|||++|.+. .+|. ++.-..+|..|.+++|.++.. .
T Consensus 176 L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~gc~L~~L~lrnN~l~tL--~ 248 (1096)
T KOG1859|consen 176 LV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-LSMVGCKLQLLNLRNNALTTL--R 248 (1096)
T ss_pred HH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-cchhhhhheeeeecccHHHhh--h
Confidence 87 4556677788899999999998733 36788899999999999988 6665 232222389999999988743 3
Q ss_pred cCCCCCCCCEEEcccCCCCccCCC--ccCCCCccEEEccCCccc
Q 004704 333 QLNNLERLRILDISENRLSGPIAS--SLNLSSVEHLSLQKNALN 374 (735)
Q Consensus 333 ~l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~ 374 (735)
.+.++++|+.||+++|-+.+.-.- .+.+..|++|+|.+|.+-
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 467888899999999987753322 236778888899888775
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=3.3e-07 Score=77.37 Aligned_cols=84 Identities=20% Similarity=0.346 Sum_probs=48.9
Q ss_pred CCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEE
Q 004704 167 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL 246 (735)
Q Consensus 167 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 246 (735)
..|+.++|++|.+. .+|+.+...++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|.-++. +.++..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence 34555666666665 556665555556666666666665 45666666666666666666665 44444433 5555555
Q ss_pred EccCCCCC
Q 004704 247 DLSNNNFE 254 (735)
Q Consensus 247 ~L~~n~l~ 254 (735)
+..+|.+.
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 55555544
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6.9e-06 Score=56.24 Aligned_cols=38 Identities=45% Similarity=0.660 Sum_probs=32.1
Q ss_pred CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccc
Q 004704 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEG 58 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~ 58 (735)
++|++|++++|+|+ .+|..+++|++|++|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 677789999999999999999874
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=2.8e-05 Score=80.38 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=28.0
Q ss_pred CCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC
Q 004704 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419 (735)
Q Consensus 360 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (735)
+..++.|++++|.++.. |. -..+|+.|.+++|.--..+|..+. ++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 45566666666655532 31 122466666665433234454332 35666666665
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=4.9e-06 Score=56.99 Aligned_cols=36 Identities=36% Similarity=0.641 Sum_probs=19.6
Q ss_pred cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccc
Q 004704 559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595 (735)
Q Consensus 559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 595 (735)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666666 34444566666666666666555
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=9.9e-07 Score=88.44 Aligned_cols=282 Identities=15% Similarity=0.053 Sum_probs=164.3
Q ss_pred ccCCCCCCCEEeCCCCc-CCCCcchhh-hCCCCCCEEeCCCC-cccccCChhhhhcCCCCCeeecccccccccccCCCC-
Q 004704 15 CLKNLTRLKILDISSNQ-LNGSLPSVI-SNLTSLEYLDLSHN-NFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW- 90 (735)
Q Consensus 15 ~~~~l~~L~~L~Ls~n~-i~~~~p~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~- 90 (735)
.-.+++++++|++.++. ++...-..+ ..|++|++|++..+ .+++..-......+++|++|+++++..+..-...++
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 44578888888888874 443322333 45888999988874 454332222345788999999998876555333223
Q ss_pred CCCCCeeEEEeeCCCCCCC--CchhhhCCCCCCEEEccCCc-CcccCchHHHhCCCCCcEEECcCCcCc-ccCcCC-cCC
Q 004704 91 LPTSQLIVLGLTKCNLNGS--YPDFLLHQYHLKYLDLSHNK-LVGNFPTWLLRNNPKLEVLLLKNNSFS-GILQLP-KAK 165 (735)
Q Consensus 91 ~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~~ 165 (735)
.++..++.+.+.+|.=.+. +-..-+.+..+..+++..+. +++.--..+...+..|+.|+.+++... ...-.. -.+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 4566677777776542211 11111234456666655553 332211223345677888888876542 211112 235
Q ss_pred CCCcCEEEccCCc-CCCcCChhHHHhcccCcEEECcCCcCCC--CCCcccCCCCCCCEEECCCccccCccc----hhhhh
Q 004704 166 HDFLHHLDISCNN-FRGKLPHNMGVILQKLMYMDISKNCFEG--NIPYSAGEMKELSLLDLSRNYFSGGLS----QSVVT 238 (735)
Q Consensus 166 ~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~ 238 (735)
+.+|+.+.++.++ ++..-...++..++.|+.+++.++.... .+...-.+++.|+.+.++++.....-. .....
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 6788888888876 4434444555667788888888875431 122233567888999888876542210 11123
Q ss_pred CCCCCCEEEccCCCCC-CcCcccccCCCCCCEEEccccccCcc--ccccccCCCCCCEEEe
Q 004704 239 GCFSLELLDLSNNNFE-GQFFSEYMNLTRLRHLYFENNNFSGK--IKDGLLSSTSLQVLDI 296 (735)
Q Consensus 239 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l 296 (735)
++..|+.+.++++... +..-..+..+++|+.+++..+.-... +...-.++|+++...+
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 4567888888888654 33334567788899888888753211 2222245666665543
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.71 E-value=1.6e-06 Score=87.10 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=19.7
Q ss_pred CcEEEcCCCcCC-CCCCccCCCCCCCCEEEcccCC
Q 004704 316 LEILSMSKNHLE-GNVPVQLNNLERLRILDISENR 349 (735)
Q Consensus 316 L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~ 349 (735)
++.+.++++... ...-+.+..+++|+.+++-.++
T Consensus 403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 403 LEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 666666666543 2233345566677777776664
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.65 E-value=8.1e-05 Score=65.76 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=42.9
Q ss_pred hHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCC
Q 004704 136 TWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEM 215 (735)
Q Consensus 136 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 215 (735)
+..|.++++|+.+.+.. .+..+....|..+++|+.+.+..+ +. .++...+..+++++.+.+.+ .+.......+..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccc
Confidence 33344444555555442 344444444555555555555443 33 44444444444555555543 2221222334445
Q ss_pred CCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCC
Q 004704 216 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL 267 (735)
Q Consensus 216 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 267 (735)
++|+.+++..+ +. .++...+.++ .|+.+.+.. .+.......|.++++|
T Consensus 81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555555443 22 3444444444 555555543 2222333444444443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=0.00012 Score=66.78 Aligned_cols=124 Identities=21% Similarity=0.206 Sum_probs=72.8
Q ss_pred EEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccC
Q 004704 171 HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSN 250 (735)
Q Consensus 171 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 250 (735)
.+++.+.++. ....++....+...+||++|.+.. -..|..++.|.+|.+.+|+|+ .+.+.+...+++|..|.|.+
T Consensus 23 e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 23 ELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccc--chhhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecC
Confidence 4455554432 112233334466677777777652 234667777888888888877 56666656667778888877
Q ss_pred CCCCCcC-cccccCCCCCCEEEccccccCcccc---ccccCCCCCCEEEeeCC
Q 004704 251 NNFEGQF-FSEYMNLTRLRHLYFENNNFSGKIK---DGLLSSTSLQVLDISNN 299 (735)
Q Consensus 251 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~l~~n 299 (735)
|++.... -..+..||+|++|.+-+|.+...-- -.+..+|+|+.||..+-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7776321 1334566777777777776652211 12345666666666543
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.60 E-value=0.00012 Score=64.69 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=4.2
Q ss_pred hhhcCCCCCeeec
Q 004704 64 SLANHSKLEGLLL 76 (735)
Q Consensus 64 ~~~~l~~L~~L~L 76 (735)
+|.++++|+.+.+
T Consensus 7 ~F~~~~~l~~i~~ 19 (129)
T PF13306_consen 7 AFYNCSNLESITF 19 (129)
T ss_dssp TTTT-TT--EEEE
T ss_pred HHhCCCCCCEEEE
Confidence 3444444444444
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.0003 Score=72.93 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=29.0
Q ss_pred CCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCC
Q 004704 239 GCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299 (735)
Q Consensus 239 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 299 (735)
.+.+++.|++++|.++. +|. -.++|++|.++++.--..+|+.+ .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 35667777777776653 231 12356666666543322444433 235666666655
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=3.7e-05 Score=86.57 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=99.6
Q ss_pred CCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCccccc-------CChhhh-------hcCCCCCeeeccccccc
Q 004704 17 KNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGM-------FPLSSL-------ANHSKLEGLLLSTRNNT 82 (735)
Q Consensus 17 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~-------~~l~~L~~L~L~~~~~~ 82 (735)
.+.-++...++.+.......-..+.... |+.|.|++-..... +....+ ..-.+|++|++++....
T Consensus 57 ~~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~ 135 (699)
T KOG3665|consen 57 IRKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF 135 (699)
T ss_pred hhhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence 3444556666666555533333343333 66666654321100 110000 12346777777665543
Q ss_pred ccccCCCC-CCCCCeeEEEeeCCCCCCC-CchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-C
Q 004704 83 LHVKTENW-LPTSQLIVLGLTKCNLNGS-YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-L 159 (735)
Q Consensus 83 ~~~~~~~~-~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~ 159 (735)
........ ..+|.|+.|.+.+-.+... .-....++++|..||+|+.+++ .+ ..+ +++++|++|.+.+=.+... .
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq~L~mrnLe~e~~~~ 212 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQVLSMRNLEFESYQD 212 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHHHHhccCCCCCchhh
Confidence 33322222 3567777777777655422 2233456777777777777776 33 233 4677777777776655531 1
Q ss_pred cCCcCCCCCcCEEEccCCcCCCcCChh------HHHhcccCcEEECcCCcCCCC
Q 004704 160 QLPKAKHDFLHHLDISCNNFRGKLPHN------MGVILQKLMYMDISKNCFEGN 207 (735)
Q Consensus 160 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~------~~~~l~~L~~L~L~~n~l~~~ 207 (735)
-..+..+++|++||+|..... ..+.- .+..+|+|+.||.+++.+.+.
T Consensus 213 l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 213 LIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 123456777788888776543 22221 123367888888887766543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00019 Score=65.35 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=85.1
Q ss_pred CCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV 98 (735)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 98 (735)
+.+...+||++|.+... ..|..++.|.+|.|++|+|+..-| ..-.-+++|+.|.|.+|++..-..-.....|++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 45778899999988732 357788999999999999985555 444566789999999988876666667788999999
Q ss_pred EEeeCCCCCCCC---chhhhCCCCCCEEEccCCcC
Q 004704 99 LGLTKCNLNGSY---PDFLLHQYHLKYLDLSHNKL 130 (735)
Q Consensus 99 L~L~~n~l~~~~---~~~l~~l~~L~~L~Ls~n~l 130 (735)
|.+-+|.++..- --.+..+++|++||.+.-.-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999999887332 23467899999999987644
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00017 Score=81.29 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=99.2
Q ss_pred CCCCEEEccCCcC-cccCchHHHhCCCCCcEEECcCCcCcccC-cCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCc
Q 004704 118 YHLKYLDLSHNKL-VGNFPTWLLRNNPKLEVLLLKNNSFSGIL-QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM 195 (735)
Q Consensus 118 ~~L~~L~Ls~n~l-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 195 (735)
.+|++||+++... ....|..++..+|+|+.|.+.+-.+.... .....++++|..||+|+.+++ .+ .++.. +++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~-LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISR-LKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhc-cccHH
Confidence 5688888888653 33556667777888888888887665331 223457788889999988887 33 45544 78888
Q ss_pred EEECcCCcCCC-CCCcccCCCCCCCEEECCCccccCcc--ch---hhhhCCCCCCEEEccCCCCCCcCcccc-cCCCCCC
Q 004704 196 YMDISKNCFEG-NIPYSAGEMKELSLLDLSRNYFSGGL--SQ---SVVTGCFSLELLDLSNNNFEGQFFSEY-MNLTRLR 268 (735)
Q Consensus 196 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 268 (735)
.|.+.+=.+.. ..-..+.++++|+.||+|..+....- .. +....++.|+.||.|++.+.+..-+.+ ..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88887765542 22235678899999999887654211 11 112347899999999888875443333 2344555
Q ss_pred EEEc
Q 004704 269 HLYF 272 (735)
Q Consensus 269 ~L~L 272 (735)
.+.+
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 4443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.0016 Score=62.31 Aligned_cols=114 Identities=21% Similarity=0.190 Sum_probs=64.2
Q ss_pred cchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCC-CCCCCeeEEEeeCCCCCCC-Cchh
Q 004704 36 LPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENW-LPTSQLIVLGLTKCNLNGS-YPDF 113 (735)
Q Consensus 36 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~-~~~~ 113 (735)
+......+..|+.|++.+..++. ...+-.+++|+.|.++.|.......-... ..+++|+++++++|++... --.-
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 33334444555555555444331 12355566666666666643333322222 3457888888888887621 1122
Q ss_pred hhCCCCCCEEEccCCcCcc--cCchHHHhCCCCCcEEECcC
Q 004704 114 LLHQYHLKYLDLSHNKLVG--NFPTWLLRNNPKLEVLLLKN 152 (735)
Q Consensus 114 l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~L~~ 152 (735)
+..+.+|..||+.+|..+. .--..+|.-+++|++|+-..
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 4567778889999887653 11234566778888776543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00015 Score=69.16 Aligned_cols=64 Identities=25% Similarity=0.306 Sum_probs=36.1
Q ss_pred cCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704 16 LKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81 (735)
Q Consensus 16 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~ 81 (735)
..+++.|++|.||-|.|+.. ..|..|++|+.|.|..|.|.+.-...-+.++++|+.|+|..|.-
T Consensus 37 c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 34566666666666666633 23566666666666666665433333455566666666555443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.36 E-value=0.0012 Score=73.13 Aligned_cols=111 Identities=26% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCCCCEEeCCCC-cCCCC-cchhhhCCCCCCEEeCCCC-cccccCC---hhhhhcCCCCCeeecccccccccccCCCC-C
Q 004704 19 LTRLKILDISSN-QLNGS-LPSVISNLTSLEYLDLSHN-NFEGMFP---LSSLANHSKLEGLLLSTRNNTLHVKTENW-L 91 (735)
Q Consensus 19 l~~L~~L~Ls~n-~i~~~-~p~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~ 91 (735)
++.|+.|.+..+ .+... .-.....+++|+.|+++++ ......+ ......+++|+.|+++.+.......-..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 555666666555 22211 2233445566666666542 1111111 11233445555555555443222111111 1
Q ss_pred CCCCeeEEEeeCCC-CCCCCch-hhhCCCCCCEEEccCCc
Q 004704 92 PTSQLIVLGLTKCN-LNGSYPD-FLLHQYHLKYLDLSHNK 129 (735)
Q Consensus 92 ~~~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~Ls~n~ 129 (735)
.|++|++|.+.+|. ++...-. ....+++|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24455555555444 3322222 22234455555555443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.31 E-value=0.00084 Score=74.39 Aligned_cols=79 Identities=23% Similarity=0.213 Sum_probs=37.0
Q ss_pred cCCCCCCCEEECCCccccCccc-hhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCcc-ccccccC-C
Q 004704 212 AGEMKELSLLDLSRNYFSGGLS-QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGK-IKDGLLS-S 288 (735)
Q Consensus 212 l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~-~ 288 (735)
...+++++.+.+..+... ... .....+|+.|. ..+... .....+++.|+++.+..... .-..... +
T Consensus 358 ~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~ 426 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLT-ESLELR---------LCRSDSLRVLNLSDCRLVTDKGLRCLADSC 426 (482)
T ss_pred HhcCCCcchhhhhhhhcc-CcchHHHhcCCcccc-hHHHHH---------hccCCccceEecccCccccccchHHHhhhh
Confidence 345666666666666533 222 34445555552 211111 11122267777777754311 1111111 5
Q ss_pred CCCCEEEeeCCcc
Q 004704 289 TSLQVLDISNNML 301 (735)
Q Consensus 289 ~~L~~L~l~~n~l 301 (735)
..++.+++.++..
T Consensus 427 ~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 427 SNLKDLDLSGCRV 439 (482)
T ss_pred hccccCCccCccc
Confidence 5667777766654
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0031 Score=60.31 Aligned_cols=82 Identities=22% Similarity=0.194 Sum_probs=40.5
Q ss_pred CCCCccEEEccCC--cccccCcccccCCCCCcEEeCCCCccccc-CChhhhCCCCccEEEccCCcCCCCC---chhhhcC
Q 004704 359 NLSSVEHLSLQKN--ALNGLIPGELFRSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPI---PDQLCQL 432 (735)
Q Consensus 359 ~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l 432 (735)
.+++|+.|.++.| ++.+.++.....+++|+++++++|+|... --..+..+.+|..|++.+|..+..- ...|.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4455555555555 44443444444456666666666665520 0112334555666666666555321 1234455
Q ss_pred CCCCEEEC
Q 004704 433 QKLAMMDL 440 (735)
Q Consensus 433 ~~L~~L~L 440 (735)
++|++||-
T Consensus 143 ~~L~~LD~ 150 (260)
T KOG2739|consen 143 PSLKYLDG 150 (260)
T ss_pred hhhccccc
Confidence 66665553
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0026 Score=36.08 Aligned_cols=19 Identities=47% Similarity=0.723 Sum_probs=9.1
Q ss_pred CCEEeCCCCcccccCCcccc
Q 004704 584 IESLDISYNKLTGQIPPQLT 603 (735)
Q Consensus 584 L~~LdLs~N~l~~~~p~~l~ 603 (735)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.00073 Score=64.64 Aligned_cols=101 Identities=28% Similarity=0.286 Sum_probs=59.2
Q ss_pred CCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704 19 LTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV 98 (735)
Q Consensus 19 l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 98 (735)
+.+.+.|+.-++.++.+ ....+++.|++|.||-|+|+..-| +..|+ +|++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCt-------------------------rLkE 67 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCT-------------------------RLKE 67 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHH-------------------------HHHH
Confidence 44555666666666532 234556667777777666653322 44444 5555
Q ss_pred EEeeCCCCCCC-CchhhhCCCCCCEEEccCCcCcccCch----HHHhCCCCCcEEE
Q 004704 99 LGLTKCNLNGS-YPDFLLHQYHLKYLDLSHNKLVGNFPT----WLLRNNPKLEVLL 149 (735)
Q Consensus 99 L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~~l~~L~~L~ 149 (735)
|+|..|.|.+. .-..+.++++|+.|.|..|.-.|..+. .+.+-+|+|++||
T Consensus 68 lYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 68 LYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 55555555432 123466788888888888876655443 3455678888765
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.35 E-value=0.0061 Score=34.56 Aligned_cols=20 Identities=60% Similarity=0.833 Sum_probs=10.6
Q ss_pred CCeEeCCCCcCcccCcccccC
Q 004704 560 ILALNLSNNSLSGSIPESFSN 580 (735)
Q Consensus 560 L~~L~Ls~N~l~~~~p~~~~~ 580 (735)
|++|||++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 44444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.91 E-value=0.00086 Score=72.38 Aligned_cols=85 Identities=28% Similarity=0.221 Sum_probs=45.0
Q ss_pred CCEEeCCCCcccccCC---hhhhhcCCCCCeeecccccccccccCC---CCCC-CCCeeEEEeeCCCCCCC----Cchhh
Q 004704 46 LEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNNTLHVKTE---NWLP-TSQLIVLGLTKCNLNGS----YPDFL 114 (735)
Q Consensus 46 L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~---~~~~-~~~L~~L~L~~n~l~~~----~~~~l 114 (735)
+.+|+|.+|.+..... ...+.....|..|++++|++....... .+.. -..++.|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566666666543211 123445556666666666554221111 1111 13556666666666633 44555
Q ss_pred hCCCCCCEEEccCCcC
Q 004704 115 LHQYHLKYLDLSHNKL 130 (735)
Q Consensus 115 ~~l~~L~~L~Ls~n~l 130 (735)
....+++.+|++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 5677777777777766
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.88 E-value=0.052 Score=28.45 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=4.6
Q ss_pred CCCEEeCCCCccc
Q 004704 583 MIESLDISYNKLT 595 (735)
Q Consensus 583 ~L~~LdLs~N~l~ 595 (735)
+|+.|||++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.73 E-value=0.0055 Score=57.23 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=71.3
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 613 (735)
...+.||++.|++. ..-..|.-++.|..|+++.|++. ..|..++++..+..+++..|..+ ..|.++..++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 56778999999887 45566788889999999999998 78888999999999999999888 78999999999999999
Q ss_pred ccCcCc
Q 004704 614 SYNNLS 619 (735)
Q Consensus 614 s~N~l~ 619 (735)
-.|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 988764
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.64 E-value=0.0018 Score=69.85 Aligned_cols=191 Identities=27% Similarity=0.253 Sum_probs=97.9
Q ss_pred eeEEEeeCCCCCCCCch----hhhCCCCCCEEEccCCcCcccCchHHHhCC----CCCcEEECcCCcCcccC----cCCc
Q 004704 96 LIVLGLTKCNLNGSYPD----FLLHQYHLKYLDLSHNKLVGNFPTWLLRNN----PKLEVLLLKNNSFSGIL----QLPK 163 (735)
Q Consensus 96 L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l----~~L~~L~L~~n~l~~~~----~~~~ 163 (735)
+..+.|.+|.+...... .+....+|..|++++|.+.+.--..+...+ ..+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777777654333 344567777778887777532222221111 23455555555554332 1223
Q ss_pred CCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccch---hhhhCC
Q 004704 164 AKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ---SVVTGC 240 (735)
Q Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l 240 (735)
.....++.++++.|.+. +.+.....+. ++..+....++++|++++|.++...-. ..+...
T Consensus 169 ~~~~~l~~l~l~~n~l~---~~g~~~l~~~--------------l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~ 231 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI---ELGLLVLSQA--------------LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG 231 (478)
T ss_pred hcccchhHHHHHhcccc---hhhhHHHhhh--------------hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc
Confidence 33445555555555442 1111000000 111222355666666666665521111 112222
Q ss_pred CC-CCEEEccCCCCCCc----CcccccCC-CCCCEEEccccccCccc----cccccCCCCCCEEEeeCCccCC
Q 004704 241 FS-LELLDLSNNNFEGQ----FFSEYMNL-TRLRHLYFENNNFSGKI----KDGLLSSTSLQVLDISNNMLSG 303 (735)
Q Consensus 241 ~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~ 303 (735)
.. +..+++..|.+.+. ....+..+ ..++.++++.|.++... .+.+..++.++++.+++|.+.+
T Consensus 232 ~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 232 ESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 33 55577777776643 12233444 56778888888877443 3445566788888888888763
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.10 E-value=0.097 Score=27.43 Aligned_cols=13 Identities=54% Similarity=0.836 Sum_probs=5.8
Q ss_pred CCCEEEccCCcCc
Q 004704 119 HLKYLDLSHNKLV 131 (735)
Q Consensus 119 ~L~~L~Ls~n~l~ 131 (735)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.75 E-value=0.19 Score=29.73 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=8.1
Q ss_pred CCCCEEeCCCCccc
Q 004704 582 KMIESLDISYNKLT 595 (735)
Q Consensus 582 ~~L~~LdLs~N~l~ 595 (735)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555666666555
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.75 E-value=0.19 Score=29.73 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=8.1
Q ss_pred CCCCEEeCCCCccc
Q 004704 582 KMIESLDISYNKLT 595 (735)
Q Consensus 582 ~~L~~LdLs~N~l~ 595 (735)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555666666555
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.24 E-value=0.29 Score=28.93 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=9.1
Q ss_pred CCCCEEeCCCCcCCCC
Q 004704 20 TRLKILDISSNQLNGS 35 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~ 35 (735)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.24 E-value=0.29 Score=28.93 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=9.1
Q ss_pred CCCCEEeCCCCcCCCC
Q 004704 20 TRLKILDISSNQLNGS 35 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~ 35 (735)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.22 E-value=0.13 Score=29.74 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=6.1
Q ss_pred CCCCEEeCCCCcCCC
Q 004704 20 TRLKILDISSNQLNG 34 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~ 34 (735)
++|++|+|++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555554443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.22 E-value=0.035 Score=52.09 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=73.8
Q ss_pred CCC-ccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCC
Q 004704 549 EIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ 627 (735)
Q Consensus 549 ~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 627 (735)
++| .++......+.||++.|++. ..-..|.-++.|..||+|.|++. ..|..+..+..+..+++.+|.++-.+-+.++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 444 45677788999999999998 56677999999999999999999 7999999999999999999999877666666
Q ss_pred CCccCCcccCCCC
Q 004704 628 FATFDESSYRGNP 640 (735)
Q Consensus 628 ~~~~~~~~~~gN~ 640 (735)
..........|||
T Consensus 110 ~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 110 EPHPKKNEQKKTE 122 (326)
T ss_pred cCCcchhhhccCc
Confidence 6555555555666
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.41 E-value=0.087 Score=48.61 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=32.9
Q ss_pred CcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcC-CCcCChhHHHhcccCcEEECcCCc-CCCCCCcccCCCCCCCEEE
Q 004704 145 LEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNF-RGKLPHNMGVILQKLMYMDISKNC-FEGNIPYSAGEMKELSLLD 222 (735)
Q Consensus 145 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~ 222 (735)
++.++-++..|....-..+..++.++.|.+.++.- .+.--+.++...++|+.|++++|. |+...-..+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 34444444444433333344444444444444331 100011112223455555555552 3332233344555555554
Q ss_pred CCC
Q 004704 223 LSR 225 (735)
Q Consensus 223 L~~ 225 (735)
+++
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.05 E-value=0.22 Score=46.10 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=24.3
Q ss_pred CCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCc
Q 004704 94 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK 129 (735)
Q Consensus 94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 129 (735)
..++.++-+++.|..+.-+.+..++.++.|.+.++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 356677777777766666666677777777776664
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.77 E-value=1.3 Score=26.16 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=10.7
Q ss_pred cCCCCEEeCCCCccc
Q 004704 581 LKMIESLDISYNKLT 595 (735)
Q Consensus 581 l~~L~~LdLs~N~l~ 595 (735)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777776
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.23 E-value=2.2 Score=25.13 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=6.9
Q ss_pred CCCEEeCCCCccc
Q 004704 583 MIESLDISYNKLT 595 (735)
Q Consensus 583 ~L~~LdLs~N~l~ 595 (735)
+|+.|+.++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3555555555555
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.72 E-value=26 Score=37.23 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred CcEEEcCCCcCCCCCC---ccCCCCCCCCEEEcccCCCC
Q 004704 316 LEILSMSKNHLEGNVP---VQLNNLERLRILDISENRLS 351 (735)
Q Consensus 316 L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 351 (735)
+..+.++.|....... .....-+.+..|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 5666677666652211 22344567788888887654
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.40 E-value=3.9 Score=24.60 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=8.5
Q ss_pred CCCCEEeCCCCccc
Q 004704 582 KMIESLDISYNKLT 595 (735)
Q Consensus 582 ~~L~~LdLs~N~l~ 595 (735)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 90
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=63.65 E-value=4.7 Score=31.88 Aligned_cols=30 Identities=7% Similarity=0.218 Sum_probs=21.3
Q ss_pred eehhhhhhhHHHHHHHHHHhhhheeccccc
Q 004704 681 MVTLYSSFGASYVTVILVLIAILWINSYWR 710 (735)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (735)
..|.|++.+.|+++++++++++.+++.+|+
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 357777777788777777666677766665
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.49 E-value=37 Score=36.18 Aligned_cols=232 Identities=17% Similarity=0.067 Sum_probs=113.4
Q ss_pred CCCEEeCCCCcCCCCcchhhhCC---CCCCEEeCCCCccccc--CChhhhhcCCCCCeeecccccccccccC-------C
Q 004704 21 RLKILDISSNQLNGSLPSVISNL---TSLEYLDLSHNNFEGM--FPLSSLANHSKLEGLLLSTRNNTLHVKT-------E 88 (735)
Q Consensus 21 ~L~~L~Ls~n~i~~~~p~~~~~l---~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~-------~ 88 (735)
.+.++||+.|.....+|..+..+ .-++.++.+...++-. ......+.-++|+..+++.|........ +
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 56777787777777777654332 3467777766554311 1112344556777777776654332221 1
Q ss_pred CCCCCCCeeEEEeeCCCCCCCCchhhh------CCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCC
Q 004704 89 NWLPTSQLIVLGLTKCNLNGSYPDFLL------HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP 162 (735)
Q Consensus 89 ~~~~~~~L~~L~L~~n~l~~~~~~~l~------~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 162 (735)
.|..-.++ +|++..+.....-+..+- .-+.=-++|+..|...+.--.....+=..++++....|...+.....
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 33444566 777766655433222110 01111234555544332111111112234788888888776553322
Q ss_pred --cCCCCCcCEEEccCCcCC-----CcCChhHHH---hcccCcEEECcCCcCCCCCCc---ccCCCCCCCEEECCCcccc
Q 004704 163 --KAKHDFLHHLDISCNNFR-----GKLPHNMGV---ILQKLMYMDISKNCFEGNIPY---SAGEMKELSLLDLSRNYFS 229 (735)
Q Consensus 163 --~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~ 229 (735)
...-+..+.+++.+-.-. +.....+.. ..--+..+.++.|......-. .+..-+.+..|++++|...
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 233445666666543211 011111110 112367777888776532222 2344567888999998765
Q ss_pred C----ccchhhhhCCCCCCEEEccCCCCC
Q 004704 230 G----GLSQSVVTGCFSLELLDLSNNNFE 254 (735)
Q Consensus 230 ~----~~~~~~~~~l~~L~~L~L~~n~l~ 254 (735)
. .+|... ..-..++.+..+.|...
T Consensus 454 d~gap~lpkal-q~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 454 DGGAPPLPKAL-QSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cCCCCcCcccc-CCCCccCCCCCCCCCcc
Confidence 2 112211 22235666666666554
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.62 E-value=13 Score=40.33 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=6.2
Q ss_pred CCCCEEEccCCcC
Q 004704 118 YHLKYLDLSHNKL 130 (735)
Q Consensus 118 ~~L~~L~Ls~n~l 130 (735)
+.+..+.|++|++
T Consensus 218 p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 218 PEILSLSLSNNRL 230 (585)
T ss_pred cceeeeecccchh
Confidence 3444444555544
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=46.92 E-value=12 Score=48.70 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=24.7
Q ss_pred eCCCCcCcccCcccccCcCCCCEEeCCCCccc
Q 004704 564 NLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595 (735)
Q Consensus 564 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 595 (735)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888666677788888888888888775
No 94
>PF15102 TMEM154: TMEM154 protein family
Probab=46.83 E-value=17 Score=31.84 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhheeccccchh
Q 004704 690 ASYVTVILVLIAILWINSYWRRL 712 (735)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~ 712 (735)
+.++++++++++++.+.||||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 33434444444445555666654
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=40.37 E-value=11 Score=33.20 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=13.6
Q ss_pred hhhhhhHHHHHHHHHHhhhheeccccchhhhh
Q 004704 684 LYSSFGASYVTVILVLIAILWINSYWRRLWFY 715 (735)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (735)
+.+.+++|..+++.+++++++|+++.++.-|.
T Consensus 52 IGvVVGVGg~ill~il~lvf~~c~r~kktdfi 83 (154)
T PF04478_consen 52 IGVVVGVGGPILLGILALVFIFCIRRKKTDFI 83 (154)
T ss_pred EEEEecccHHHHHHHHHhheeEEEecccCccc
Confidence 33444444444444344444444333444333
No 96
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=39.59 E-value=28 Score=22.63 Aligned_cols=21 Identities=5% Similarity=0.058 Sum_probs=9.1
Q ss_pred hhhhhHHHHHHHHHHhhhhee
Q 004704 685 YSSFGASYVTVILVLIAILWI 705 (735)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~ 705 (735)
.+++.+|+++.++.++...++
T Consensus 9 Iv~V~vg~~iiii~~~~YaCc 29 (38)
T PF02439_consen 9 IVAVVVGMAIIIICMFYYACC 29 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444444443333
No 97
>PF15050 SCIMP: SCIMP protein
Probab=37.43 E-value=18 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=11.4
Q ss_pred hhhhhhHHHHHHHHHHhhhheeccccc
Q 004704 684 LYSSFGASYVTVILVLIAILWINSYWR 710 (735)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (735)
|++.++++++++.+++..++|+..+|.
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQ 34 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344444444444444444444443
No 98
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=34.19 E-value=20 Score=23.72 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHHhhhhe
Q 004704 687 SFGASYVTVILVLIAILW 704 (735)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~ 704 (735)
++++.++++++++.++++
T Consensus 16 ~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 16 GVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEechHHHHHHHHHHhh
Confidence 334444443333333333
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.08 E-value=33 Score=19.99 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=8.7
Q ss_pred CCCCCEEeCCCCc
Q 004704 43 LTSLEYLDLSHNN 55 (735)
Q Consensus 43 l~~L~~L~Ls~n~ 55 (735)
+++|++|+|+++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4567777777764
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.61 E-value=31 Score=37.51 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCCCCeeEEEeeCCCCCCC--CchhhhCCCCCCEEEccCC
Q 004704 91 LPTSQLIVLGLTKCNLNGS--YPDFLLHQYHLKYLDLSHN 128 (735)
Q Consensus 91 ~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n 128 (735)
.+.+.+..++|++|++... +...-...++|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4567888999999987632 1122234566777777776
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.47 E-value=32 Score=45.09 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=28.4
Q ss_pred ECCCCcccCCCCccccccccCCeEeCCCCcCc
Q 004704 540 DLSCNQLTGEIPSDIGQLQAILALNLSNNSLS 571 (735)
Q Consensus 540 dLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 571 (735)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999666678899999999999999886
No 102
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=25.98 E-value=67 Score=24.86 Aligned_cols=21 Identities=5% Similarity=0.108 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHhhhheeccc
Q 004704 688 FGASYVTVILVLIAILWINSY 708 (735)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~ 708 (735)
+++|+++++.+++++++++++
T Consensus 6 ~~~g~~~ll~~v~~~~~~~rr 26 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCFRR 26 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHhheeEEEEEee
Confidence 334444444344444444433
No 103
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.61 E-value=56 Score=29.77 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=17.5
Q ss_pred ehhhhhhhHHHHHHHHHHhhhheec
Q 004704 682 VTLYSSFGASYVTVILVLIAILWIN 706 (735)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (735)
+.|.+++++|+++|.++.+++.|.-
T Consensus 23 laF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888777766666653
Done!