Query 004704
Match_columns 735
No_of_seqs 696 out of 5279
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:09:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.3E-78 1.5E-82 702.0 41.8 634 2-654 106-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.3E-69 8E-74 628.5 41.6 629 1-641 55-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-61 5.7E-66 557.9 45.3 559 3-647 11-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-57 1.6E-61 520.8 47.3 560 23-640 7-595 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-57 6.6E-62 533.8 40.6 533 3-647 11-565 (844)
6 3j0a_A TOLL-like receptor 5; m 100.0 6.8E-57 2.3E-61 529.2 43.5 511 23-641 7-538 (844)
7 3t6q_A CD180 antigen; protein- 100.0 4.1E-57 1.4E-61 514.3 38.1 530 2-623 18-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2E-55 6.8E-60 500.4 40.7 534 22-647 14-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-55 7.4E-60 500.1 39.2 532 23-648 14-564 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-54 6.5E-59 492.3 32.9 527 2-624 17-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 4.8E-50 1.6E-54 453.0 37.6 492 20-625 28-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.2E-48 4.2E-53 441.5 32.7 491 1-600 33-536 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-48 3.9E-53 439.4 31.9 483 22-623 7-514 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-47 4.1E-52 431.1 32.0 484 2-599 11-514 (549)
15 4eco_A Uncharacterized protein 100.0 1.1E-48 3.8E-53 444.3 17.4 436 94-622 81-603 (636)
16 4g8a_A TOLL-like receptor 4; l 100.0 9.9E-46 3.4E-50 423.6 41.4 551 24-667 35-612 (635)
17 4eco_A Uncharacterized protein 100.0 3.1E-48 1E-52 440.6 19.5 460 20-598 81-603 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-47 1.5E-51 423.3 25.4 402 110-623 61-485 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 7.7E-47 2.6E-51 435.2 24.7 484 20-620 323-865 (876)
20 4ecn_A Leucine-rich repeat pro 100.0 4.2E-46 1.4E-50 429.1 27.9 462 94-646 323-870 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 7.7E-46 2.6E-50 413.2 25.6 453 98-648 4-487 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-44 9.8E-49 411.4 37.2 524 6-623 41-584 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-43 5.1E-48 398.0 23.6 461 20-624 31-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-42 8.9E-47 387.9 28.6 455 1-599 36-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3.7E-41 1.3E-45 369.0 29.2 375 170-627 13-416 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 1.2E-40 4E-45 361.7 23.6 421 18-624 9-434 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 3.8E-40 1.3E-44 361.0 27.6 383 122-600 14-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 9.7E-40 3.3E-44 354.4 26.5 403 93-643 10-430 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 9.9E-38 3.4E-42 338.9 24.3 368 7-455 29-396 (457)
30 2id5_A Lingo-1, leucine rich r 100.0 1.7E-37 5.8E-42 341.8 25.2 346 220-647 15-361 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5.4E-37 1.8E-41 333.1 27.8 361 108-624 32-392 (457)
32 1o6v_A Internalin A; bacterial 100.0 1.1E-35 3.7E-40 325.8 34.4 324 191-621 67-390 (466)
33 1o6v_A Internalin A; bacterial 100.0 2.6E-35 8.9E-40 322.7 35.3 349 117-601 45-393 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 2.1E-35 7.1E-40 325.1 25.8 347 170-624 14-361 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 8.3E-35 2.8E-39 311.4 26.5 334 214-645 43-377 (390)
36 3oja_B Anopheles plasmodium-re 100.0 2.7E-34 9.4E-39 324.2 27.4 334 215-645 50-383 (597)
37 1ogq_A PGIP-2, polygalacturona 100.0 3.8E-35 1.3E-39 303.3 18.1 254 316-648 52-310 (313)
38 4fmz_A Internalin; leucine ric 100.0 2E-32 6.9E-37 288.2 30.0 282 240-619 65-346 (347)
39 3o6n_A APL1; leucine-rich repe 100.0 1.7E-32 5.8E-37 293.5 29.0 312 165-597 43-354 (390)
40 4fmz_A Internalin; leucine ric 100.0 5.8E-32 2E-36 284.7 31.6 305 116-446 42-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 9.7E-32 3.3E-36 303.4 28.7 312 166-598 50-361 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 5E-33 1.7E-37 287.3 16.1 251 289-620 50-306 (313)
43 1z7x_W Ribonuclease inhibitor; 100.0 3.2E-35 1.1E-39 322.4 -3.7 185 167-352 3-213 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 4E-31 1.4E-35 276.1 25.3 290 217-617 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-30 4E-35 272.6 26.7 250 193-454 34-285 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-34 4.1E-39 317.9 -4.3 383 44-452 3-446 (461)
47 1xku_A Decorin; proteoglycan, 100.0 1.8E-30 6.2E-35 271.0 27.2 292 216-617 31-330 (330)
48 1xku_A Decorin; proteoglycan, 100.0 2.5E-30 8.4E-35 270.0 27.2 251 192-453 31-283 (330)
49 3ogk_B Coronatine-insensitive 100.0 2.1E-31 7.2E-36 301.8 2.0 397 141-616 110-548 (592)
50 3ogk_B Coronatine-insensitive 100.0 2E-31 6.7E-36 302.1 -1.4 353 96-453 140-533 (592)
51 2z66_A Variable lymphocyte rec 100.0 2.3E-28 7.9E-33 252.2 19.7 250 292-623 10-265 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 9.6E-29 3.3E-33 260.4 15.5 207 215-449 30-238 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 5.8E-28 2E-32 254.4 17.2 275 170-450 34-318 (353)
54 3zyi_A Leucine-rich repeat-con 100.0 3.5E-27 1.2E-31 257.1 23.8 250 291-623 56-307 (452)
55 3zyj_A Leucine-rich repeat-con 100.0 4E-27 1.4E-31 255.7 24.0 251 290-623 44-296 (440)
56 3zyj_A Leucine-rich repeat-con 100.0 4.5E-27 1.5E-31 255.4 23.7 246 267-595 45-292 (440)
57 3zyi_A Leucine-rich repeat-con 100.0 4.8E-27 1.7E-31 256.0 23.7 252 315-648 55-309 (452)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-27 5.2E-32 243.2 17.9 89 535-623 154-242 (285)
59 4fcg_A Uncharacterized protein 99.9 3.3E-27 1.1E-31 245.1 19.8 235 288-619 80-314 (328)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-27 5.6E-32 243.0 17.1 252 291-624 13-266 (285)
61 4fcg_A Uncharacterized protein 99.9 5.4E-27 1.8E-31 243.5 20.7 236 263-595 79-314 (328)
62 2z66_A Variable lymphocyte rec 99.9 3.8E-27 1.3E-31 243.0 18.7 279 170-455 10-296 (306)
63 2p1m_B Transport inhibitor res 99.9 1.1E-29 3.7E-34 287.9 -2.1 425 113-618 61-543 (594)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-28 6.5E-33 253.7 4.9 262 271-623 16-280 (317)
65 1wwl_A Monocyte differentiatio 99.9 4E-28 1.4E-32 250.7 5.3 205 336-620 93-310 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 3E-25 1E-29 247.6 28.3 80 535-623 222-301 (622)
67 2p1m_B Transport inhibitor res 99.9 2.5E-29 8.4E-34 285.0 -5.3 234 14-251 60-324 (594)
68 1wwl_A Monocyte differentiatio 99.9 8.2E-28 2.8E-32 248.3 6.1 248 262-596 40-310 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-27 8E-32 245.5 6.2 265 170-450 13-280 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.8E-29 243.1 26.8 264 96-430 42-305 (622)
71 3oja_A Leucine-rich immune mol 99.9 2.2E-26 7.4E-31 252.1 12.5 215 316-619 36-250 (487)
72 3oja_A Leucine-rich immune mol 99.9 1E-26 3.4E-31 254.7 8.5 235 289-614 34-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1E-24 3.5E-29 221.2 21.3 208 339-624 29-242 (276)
74 2o6q_A Variable lymphocyte rec 99.9 1.5E-23 5E-28 211.6 22.9 205 340-623 18-222 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 9.7E-24 3.3E-28 213.9 20.9 227 294-599 12-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 1.3E-23 4.5E-28 213.8 20.1 205 334-621 6-210 (290)
77 2o6q_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 208.6 21.5 206 361-646 16-222 (270)
78 1p9a_G Platelet glycoprotein I 99.9 3.1E-23 1.1E-27 211.0 20.4 206 359-647 8-213 (290)
79 3rfs_A Internalin B, repeat mo 99.9 3.6E-23 1.2E-27 209.0 16.9 220 316-624 21-240 (272)
80 3rfs_A Internalin B, repeat mo 99.9 9E-23 3.1E-27 206.0 16.1 209 310-606 38-246 (272)
81 3goz_A Leucine-rich repeat-con 99.9 2.9E-23 9.9E-28 219.0 11.2 267 2-310 4-305 (362)
82 3m19_A Variable lymphocyte rec 99.9 2.4E-22 8.3E-27 200.3 16.9 183 362-624 15-197 (251)
83 3goz_A Leucine-rich repeat-con 99.9 1.7E-23 6E-28 220.7 7.5 107 221-328 3-123 (362)
84 2ca6_A RAN GTPase-activating p 99.9 3.7E-24 1.3E-28 228.3 0.5 241 305-623 24-320 (386)
85 2ast_B S-phase kinase-associat 99.9 6.3E-23 2.2E-27 214.5 7.9 249 290-624 48-311 (336)
86 4glp_A Monocyte differentiatio 99.9 4.8E-22 1.6E-26 204.9 14.4 133 289-422 64-210 (310)
87 2xwt_C Thyrotropin receptor; s 99.9 1.4E-21 4.8E-26 193.4 15.8 79 534-616 155-236 (239)
88 2ast_B S-phase kinase-associat 99.9 2.1E-22 7.2E-27 210.5 8.9 255 21-311 48-315 (336)
89 2ca6_A RAN GTPase-activating p 99.9 4.2E-23 1.5E-27 220.1 3.6 247 182-450 23-320 (386)
90 3m19_A Variable lymphocyte rec 99.9 9.2E-21 3.2E-25 188.9 19.6 179 340-597 16-194 (251)
91 4glp_A Monocyte differentiatio 99.9 1.5E-21 5E-26 201.3 13.9 226 118-352 64-308 (310)
92 1h6u_A Internalin H; cell adhe 99.9 6.2E-21 2.1E-25 196.1 17.6 192 337-620 40-231 (308)
93 1h6u_A Internalin H; cell adhe 99.9 8.2E-21 2.8E-25 195.1 18.0 197 311-601 39-235 (308)
94 2xwt_C Thyrotropin receptor; s 99.9 5.9E-21 2E-25 188.8 16.3 178 217-398 32-218 (239)
95 4ay9_X Follicle-stimulating ho 99.8 5.4E-20 1.8E-24 192.9 19.3 239 292-617 12-257 (350)
96 4ay9_X Follicle-stimulating ho 99.8 2.6E-20 8.8E-25 195.3 14.8 241 23-276 12-257 (350)
97 3cvr_A Invasion plasmid antige 99.8 2.4E-19 8.3E-24 197.5 17.8 188 315-606 60-254 (571)
98 2o6s_A Variable lymphocyte rec 99.8 2.3E-19 8E-24 173.2 15.5 130 316-445 30-160 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-19 8.6E-24 174.2 14.2 157 388-624 14-171 (220)
100 2o6s_A Variable lymphocyte rec 99.8 4.7E-19 1.6E-23 171.1 15.9 162 362-607 29-190 (208)
101 2v9t_B SLIT homolog 2 protein 99.8 4.4E-19 1.5E-23 172.5 14.3 156 388-623 14-169 (220)
102 3cvr_A Invasion plasmid antige 99.8 8.5E-19 2.9E-23 193.2 17.2 167 265-456 80-253 (571)
103 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6.2E-23 169.3 16.0 158 386-624 20-177 (229)
104 2xot_A Amphoterin-induced prot 99.8 2.5E-19 8.6E-24 188.6 10.3 178 364-621 21-204 (361)
105 2v9t_B SLIT homolog 2 protein 99.8 1.4E-18 4.9E-23 168.8 13.8 157 412-648 14-171 (220)
106 1h6t_A Internalin B; cell adhe 99.8 2.9E-18 1E-22 174.4 16.7 170 360-620 45-214 (291)
107 2xot_A Amphoterin-induced prot 99.8 9.6E-19 3.3E-23 184.1 12.4 111 341-453 21-132 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 6.7E-18 2.3E-22 164.1 15.3 156 364-599 14-170 (220)
109 1h6t_A Internalin B; cell adhe 99.8 5.6E-18 1.9E-22 172.3 14.2 187 319-597 29-215 (291)
110 3sb4_A Hypothetical leucine ri 99.7 1.7E-18 5.8E-23 179.9 8.5 292 10-320 13-327 (329)
111 3e6j_A Variable lymphocyte rec 99.7 3E-17 1E-21 160.6 16.8 156 363-599 21-176 (229)
112 1m9s_A Internalin B; cell inva 99.7 6.3E-18 2.2E-22 188.5 13.0 104 336-446 41-144 (605)
113 1w8a_A SLIT protein; signaling 99.7 4.9E-18 1.7E-22 161.3 10.0 113 534-646 54-166 (192)
114 4ezg_A Putative uncharacterize 99.7 8.5E-18 2.9E-22 160.5 10.9 154 382-620 41-195 (197)
115 1m9s_A Internalin B; cell inva 99.7 2.8E-17 9.7E-22 183.2 15.5 174 262-449 40-213 (605)
116 1xeu_A Internalin C; cellular 99.7 1.2E-17 3.9E-22 167.2 10.7 172 359-622 17-188 (263)
117 1dce_A Protein (RAB geranylger 99.7 6.8E-20 2.3E-24 203.2 -7.7 216 286-613 346-567 (567)
118 4ezg_A Putative uncharacterize 99.7 6.9E-17 2.4E-21 154.2 11.7 59 534-596 136-195 (197)
119 1dce_A Protein (RAB geranylger 99.7 6.8E-19 2.3E-23 195.1 -3.0 183 359-625 347-552 (567)
120 3sb4_A Hypothetical leucine ri 99.7 3.1E-17 1.1E-21 170.3 9.6 284 117-439 24-327 (329)
121 1w8a_A SLIT protein; signaling 99.7 5.9E-17 2E-21 153.8 10.7 132 388-599 11-143 (192)
122 4b8c_D Glucose-repressible alc 99.7 8.7E-18 3E-22 192.3 5.6 132 320-455 207-338 (727)
123 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.3E-21 159.6 13.4 161 2-180 25-185 (263)
124 4b8c_D Glucose-repressible alc 99.7 3E-17 1E-21 187.8 5.9 227 289-624 173-409 (727)
125 4fdw_A Leucine rich hypothetic 99.7 3.7E-15 1.3E-19 157.8 20.7 268 42-326 111-382 (401)
126 4fdw_A Leucine rich hypothetic 99.7 3E-15 1E-19 158.5 20.0 267 66-350 110-382 (401)
127 2wfh_A SLIT homolog 2 protein 99.6 9.7E-16 3.3E-20 145.3 12.8 114 534-648 31-145 (193)
128 4fs7_A Uncharacterized protein 99.6 6.3E-15 2.2E-19 156.9 20.6 65 84-151 61-125 (394)
129 2ell_A Acidic leucine-rich nuc 99.6 7.1E-16 2.4E-20 143.1 10.5 88 534-621 71-162 (168)
130 2ell_A Acidic leucine-rich nuc 99.6 5.7E-16 1.9E-20 143.7 9.8 138 384-601 23-165 (168)
131 2wfh_A SLIT homolog 2 protein 99.6 1.9E-15 6.6E-20 143.2 13.6 90 534-623 54-143 (193)
132 4fs7_A Uncharacterized protein 99.6 8.1E-15 2.8E-19 156.1 18.0 329 13-390 64-393 (394)
133 2o6r_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 139.7 13.0 90 534-623 52-141 (177)
134 2je0_A Acidic leucine-rich nuc 99.6 8.3E-16 2.8E-20 139.5 7.8 81 534-614 64-148 (149)
135 2o6r_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 135.3 13.2 133 387-599 9-141 (177)
136 2je0_A Acidic leucine-rich nuc 99.6 1.2E-14 4.1E-19 131.7 11.3 127 315-442 18-149 (149)
137 1ds9_A Outer arm dynein; leuci 99.5 2.7E-16 9.1E-21 150.2 -3.9 155 381-619 14-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 8.7E-19 133.5 8.6 86 533-620 63-154 (176)
139 3g39_A Variable lymphocyte rec 99.5 7.8E-14 2.7E-18 129.2 11.2 91 534-624 30-120 (170)
140 1a9n_A U2A', U2A'; complex (nu 99.5 3.3E-14 1.1E-18 132.8 8.4 133 381-595 15-153 (176)
141 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 128.1 11.3 108 536-646 11-119 (170)
142 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 126.5 11.3 107 537-646 15-122 (174)
143 2r9u_A Variable lymphocyte rec 99.5 2.3E-13 8E-18 126.4 11.2 91 534-624 33-123 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.4E-20 143.9 -4.6 151 362-596 19-186 (198)
145 4gt6_A Cell surface protein; l 99.4 1.2E-11 4.3E-16 131.4 22.7 123 316-445 267-390 (394)
146 4gt6_A Cell surface protein; l 99.4 7.9E-12 2.7E-16 132.9 20.7 331 13-373 56-390 (394)
147 2ifg_A High affinity nerve gro 99.3 2.3E-12 7.7E-17 134.8 10.6 108 538-647 12-121 (347)
148 2ifg_A High affinity nerve gro 99.2 2E-11 6.9E-16 127.5 9.7 89 534-623 31-120 (347)
149 3un9_A NLR family member X1; l 99.2 5.6E-13 1.9E-17 139.7 -2.2 68 213-280 180-254 (372)
150 3un9_A NLR family member X1; l 99.2 9.2E-13 3.2E-17 138.0 -0.8 160 143-302 72-252 (372)
151 4h09_A Hypothetical leucine ri 99.2 2.2E-09 7.7E-14 113.4 22.2 136 316-456 219-355 (379)
152 4h09_A Hypothetical leucine ri 99.1 1.1E-08 3.6E-13 108.2 22.3 304 112-433 40-356 (379)
153 2ra8_A Uncharacterized protein 98.8 3.8E-09 1.3E-13 109.5 5.2 86 165-252 250-341 (362)
154 2ra8_A Uncharacterized protein 98.8 9.6E-09 3.3E-13 106.5 8.0 102 95-200 108-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 5.7E-08 1.9E-12 90.7 2.4 119 13-156 29-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 2.5E-07 8.4E-12 90.7 5.1 64 534-599 170-237 (267)
157 3rw6_A Nuclear RNA export fact 98.3 1.1E-07 3.7E-12 93.3 0.8 89 534-624 141-238 (267)
158 1io0_A Tropomodulin; LRR prote 98.3 2.6E-07 8.8E-12 86.2 2.6 113 334-446 32-164 (185)
159 3e4g_A ATP synthase subunit S, 97.8 4.2E-06 1.4E-10 75.9 1.3 88 20-129 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 9.8E-06 3.3E-10 73.4 3.3 86 93-178 60-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00025 8.7E-09 65.4 3.4 118 16-155 37-169 (197)
162 3rfe_A Platelet glycoprotein I 97.1 0.00092 3.1E-08 57.6 6.5 37 584-620 33-69 (130)
163 3rfe_A Platelet glycoprotein I 97.0 0.0012 4.2E-08 56.8 6.6 57 537-595 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00056 1.9E-08 63.1 3.2 38 192-229 41-83 (197)
165 2lz0_A Uncharacterized protein 67.0 5.6 0.00019 31.7 4.1 46 7-53 7-52 (100)
166 2lz0_A Uncharacterized protein 56.6 20 0.0007 28.4 5.7 47 30-78 6-52 (100)
167 2k9y_A Ephrin type-A receptor 26.0 51 0.0017 20.9 2.7 6 689-694 20-25 (41)
168 2klu_A T-cell surface glycopro 20.8 43 0.0015 23.8 1.6 16 688-703 14-29 (70)
169 2k1k_A Ephrin type-A receptor 20.5 50 0.0017 20.7 1.7 9 688-696 16-24 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-78 Score=701.95 Aligned_cols=634 Identities=32% Similarity=0.441 Sum_probs=497.0
Q ss_pred cCCCCCCCCcccc--ccCCCCCCCEEeCCCCcCCCCcchhh-hCCCCCCEEeCCCCcccccCChhh--hhcCCCCCeeec
Q 004704 2 NLERNFIGSPLIT--CLKNLTRLKILDISSNQLNGSLPSVI-SNLTSLEYLDLSHNNFEGMFPLSS--LANHSKLEGLLL 76 (735)
Q Consensus 2 ~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~--~~~l~~L~~L~L 76 (735)
||++|.++|.+|. .|+++++|++|+|++|.+++.+|..+ .++++|++||+++|++++..|... +.++++|++|++
T Consensus 106 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L 185 (768)
T 3rgz_A 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185 (768)
T ss_dssp ECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEEC
T ss_pred ECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEEC
Confidence 4444444444444 44444444444444444444444333 444444444444444444333111 455556666666
Q ss_pred ccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCc
Q 004704 77 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS 156 (735)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 156 (735)
++|.+.+..+ +..+++|++|++++|++.+.+|. +.++++|++|++++|++++.+|..+ ..+++|++|++++|.++
T Consensus 186 s~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 186 SGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFV 260 (768)
T ss_dssp CSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCE
T ss_pred CCCcccccCC---cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCccc
Confidence 6555543332 36778999999999999988877 8999999999999999987777765 58999999999999998
Q ss_pred ccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhh
Q 004704 157 GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSV 236 (735)
Q Consensus 157 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 236 (735)
+..|.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|...
T Consensus 261 ~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~ 338 (768)
T 3rgz_A 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338 (768)
T ss_dssp ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH
Confidence 876654 789999999999999999999988767999999999999999999999999999999999999998999887
Q ss_pred hhCCCCCCEEEccCCCCCCcCcccccCCC-CCCEEEccccccCccccccccC--CCCCCEEEeeCCccCCCCCchhhhhc
Q 004704 237 VTGCFSLELLDLSNNNFEGQFFSEYMNLT-RLRHLYFENNNFSGKIKDGLLS--STSLQVLDISNNMLSGHIPHWMGNFS 313 (735)
Q Consensus 237 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--~~~L~~L~l~~n~l~~~~p~~~~~~~ 313 (735)
+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..++
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence 78899999999999999988899888887 9999999999999888888776 78999999999999999999999988
Q ss_pred ccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeC
Q 004704 314 SELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNL 392 (735)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 392 (735)
. |+.|++++|++++.+|..+..+++|++|++++|.+.+.++..+ .+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 419 ~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 419 E-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp T-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred C-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 7 9999999999999999999999999999999999998888777 8999999999999999999999999999999999
Q ss_pred CCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCC
Q 004704 393 RDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKL 472 (735)
Q Consensus 393 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 472 (735)
++|++++.+|.+++.+++|++|++++|++.+.+|..+..+++|+.|++++|+++|.+|..+.....+.... ...+...
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~--~~~~~~~ 575 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN--FIAGKRY 575 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS--TTCSCEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh--ccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999887654322110 0000000
Q ss_pred ---CCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCC
Q 004704 473 ---NSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 549 (735)
Q Consensus 473 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 549 (735)
........ ....................+..... ..... ....+... .....+++|+.|||++|+++|.
T Consensus 576 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~---~~~~g~~~-~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 576 VYIKNDGMKKE-CHGAGNLLEFQGIRSEQLNRLSTRNP---CNITS---RVYGGHTS-PTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp EEEECCSCCTT-CCSSEEEEECTTCCGGGGGGGGGTCC---SCTTS---CEEEEECC-CSCSSSBCCCEEECCSSCCBSC
T ss_pred ccccccccccc-ccccccccccccccchhhhccccccc---ccccc---ceecccCc-hhhhccccccEEECcCCccccc
Confidence 00000000 00000000000000000000000000 00000 00001100 1123568899999999999999
Q ss_pred CCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCC
Q 004704 550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA 629 (735)
Q Consensus 550 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 629 (735)
+|.+++.+++|+.|+|++|+++|.+|..|+++++|++||||+|+++|.+|..+..+++|++||+++|+++|.+|+.++|.
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCCCCCccccCCCCCC
Q 004704 630 TFDESSYRGNPSLCAWLIQQKYSRT 654 (735)
Q Consensus 630 ~~~~~~~~gN~~lc~~~~~~~~~~~ 654 (735)
++...+|.|||++||.++. .|...
T Consensus 728 ~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp GSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred cCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999999876 67543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-69 Score=628.51 Aligned_cols=629 Identities=28% Similarity=0.364 Sum_probs=480.7
Q ss_pred CcCCCCCCCCc---cccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCCh-hhhhcCCCCCeeec
Q 004704 1 MNLERNFIGSP---LITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPL-SSLANHSKLEGLLL 76 (735)
Q Consensus 1 L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L 76 (735)
|||+++.+.|. +|++|.++++|+.++++.|.+. .+|+.|+++++|++|||++|.++|.+|. ..++++++|++|++
T Consensus 55 L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 133 (768)
T 3rgz_A 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133 (768)
T ss_dssp EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEEC
T ss_pred EECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEEC
Confidence 57899999998 8889999999999999998776 4667899999999999999999887773 26889999999999
Q ss_pred ccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchh---hhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCC
Q 004704 77 STRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDF---LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN 153 (735)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n 153 (735)
++|.+.+.++...+..+++|++|++++|++++..|.. +.++++|++|++++|.+++..|. ..+++|++|++++|
T Consensus 134 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n 210 (768)
T 3rgz_A 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSN 210 (768)
T ss_dssp CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSS
T ss_pred cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCC
Confidence 9998877777665578889999999999998888777 78889999999999998876664 47889999999999
Q ss_pred cCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccc
Q 004704 154 SFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233 (735)
Q Consensus 154 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 233 (735)
.+++..|. +..+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|
T Consensus 211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip 286 (768)
T 3rgz_A 211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286 (768)
T ss_dssp CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCC
T ss_pred cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccC
Confidence 99887776 888999999999999998777777765 789999999999888777765 78889999999999888888
Q ss_pred hhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCcccccc-ccCCCCCCEEEeeCCccCCCCCchhhhh
Q 004704 234 QSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG-LLSSTSLQVLDISNNMLSGHIPHWMGNF 312 (735)
Q Consensus 234 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~l~~n~l~~~~p~~~~~~ 312 (735)
..++..+++|++|++++|.+++..|..|..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..+
T Consensus 287 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp CCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred HHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence 877665688999999999888888888888999999999999888777765 7888899999999998888888888887
Q ss_pred cccCcEEEcCCCcCCCCCCccCCC--CCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcE
Q 004704 313 SSELEILSMSKNHLEGNVPVQLNN--LERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVT 389 (735)
Q Consensus 313 ~~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 389 (735)
+.+|+.|++++|++++.+|..+.. +++|++|++++|.+++.++..+ .+++|++|++++|.+++.+|..+..+++|+.
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 734888888888888777776666 6778888888888877766665 7788888888888888777877888888888
Q ss_pred EeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccc--cCCcc
Q 004704 390 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG--SDDVL 467 (735)
Q Consensus 390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~--~~~~~ 467 (735)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..++.++.++.. +.+.+
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 8888888887778778888888888888888887778778888888888888888887888777776655442 22222
Q ss_pred CCCCCCCcccchhhhcccCCCCCCC-ccccchhhhhhhhhhhhccccceeEEEEe-cccc-----------ccc------
Q 004704 468 NGSKLNSPELDEEIEFGSLGNNRSS-NTMFGMWRWLSALEKRAAIDERVEIEFAM-KNRY-----------EIY------ 528 (735)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~-----------~~~------ 528 (735)
.+..+....-...+..-.+..+... ..+...+....... ........+.+ .+.. ..+
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC----CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh----hhccccccccccccccccccccccccccccccccch
Confidence 2222111000000111111111110 01111110000000 00000000000 0000 000
Q ss_pred cCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCC
Q 004704 529 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 608 (735)
Q Consensus 529 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 608 (735)
....++.+..++++.|.+.|.+|..++.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..+.+++.|
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 01123445567788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEcccCcCcccCCCC-CCCCccCCcccCCCCC
Q 004704 609 SIFNVSYNNLSGRTPDK-GQFATFDESSYRGNPS 641 (735)
Q Consensus 609 ~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~gN~~ 641 (735)
++||||+|+++|.+|.. ..+..+....+.+|+.
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 99999999999999973 5556667777777764
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-61 Score=557.88 Aligned_cols=559 Identities=20% Similarity=0.222 Sum_probs=308.8
Q ss_pred CCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccc
Q 004704 3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT 82 (735)
Q Consensus 3 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~ 82 (735)
.++++++. +|..+. +++++|+|++|.+++..+.+|+++++|++|++++|.+++..| ..|.++++|++|++++|.+.
T Consensus 11 cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 11 CSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp CCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCC
T ss_pred CCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccC
Confidence 34444442 343333 455555555555555444455555555555555555554333 34555555555555555433
Q ss_pred ccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCC
Q 004704 83 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLP 162 (735)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 162 (735)
.++..+|..+++|++|++++|++++..|..|.++++|++|++++|.+++..|..+ .++++|++|++++|.+++..+..
T Consensus 87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp -CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHH
T ss_pred -ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCcccccCHHH
Confidence 3333345555555555555555555444555555555555555555553333322 34555555555555555544333
Q ss_pred cC--CCCCcCEEEccCCcCCCcCChhHHHhcc---------------------------cCcEEECcCCcCCCCCCcccC
Q 004704 163 KA--KHDFLHHLDISCNNFRGKLPHNMGVILQ---------------------------KLMYMDISKNCFEGNIPYSAG 213 (735)
Q Consensus 163 ~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~---------------------------~L~~L~L~~n~l~~~~~~~l~ 213 (735)
+. .+++|++|++++|.+++..|..+.. ++ +|+.|++++|.+++..|..+.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred hhccccccccEEECCCCcccccChhhhhh-hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 22 3345555555555555333333322 34 455555555555544444444
Q ss_pred CCCC--CCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCc-----cccc---
Q 004704 214 EMKE--LSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSG-----KIKD--- 283 (735)
Q Consensus 214 ~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~--- 283 (735)
.++. |++|++++|.+++ ++...+..+++|++|++++|.+.+..+..|..+++|+.|++++|...+ .+|.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred ccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 4432 5555555555542 222223445555555555555554444455555555555555443221 1111
Q ss_pred -cccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCC--CCccCCC--CCCCCEEEcccCCCCccCCCcc
Q 004704 284 -GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN--VPVQLNN--LERLRILDISENRLSGPIASSL 358 (735)
Q Consensus 284 -~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~ 358 (735)
.+..+++|++|++++|.+++..+..+..++. |++|++++|.+... .+..|.. .++|+.|++++|++++..+..+
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence 3444455555555555555444444444444 55555555543211 1111211 1345555555555554444433
Q ss_pred -CCCCccEEEccCCcccccCc-ccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCC--CCCchhhhcCCC
Q 004704 359 -NLSSVEHLSLQKNALNGLIP-GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ--GPIPDQLCQLQK 434 (735)
Q Consensus 359 -~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~ 434 (735)
.+++|+.|++++|.+.+.+| ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+. +.+|..+..+++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 45555555555555544333 34445555555555555555444445555555555555555543 234445555555
Q ss_pred CCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccc
Q 004704 435 LAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDER 514 (735)
Q Consensus 435 L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 514 (735)
|+.|++++|++++..|..+.
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~------------------------------------------------------------ 501 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLE------------------------------------------------------------ 501 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTT------------------------------------------------------------
T ss_pred CCEEECCCCCCCcCChhhhc------------------------------------------------------------
Confidence 55555555555433333332
Q ss_pred eeEEEEeccccccccCCcccccceEECCCCcccCCC--------CccccccccCCeEeCCCCcCcccCcccccCcCCCCE
Q 004704 515 VEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI--------PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIES 586 (735)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 586 (735)
.+++|+.|++++|++++.. +..++.+++|++|+|++|+++...+..|+++++|+.
T Consensus 502 -----------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 502 -----------------GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp -----------------TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred -----------------cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 2467889999999998542 223788999999999999999655567999999999
Q ss_pred EeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC-C-CCCccCCcccCCCCCCCCccc
Q 004704 587 LDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-G-QFATFDESSYRGNPSLCAWLI 647 (735)
Q Consensus 587 LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~-~~~~~~~~~~~gN~~lc~~~~ 647 (735)
|||++|++++..+..+..+++|+.|++++|++++..|.. . .+..+....+.||||.|+|..
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999877778899999999999999999887753 2 466777888999999999874
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-57 Score=520.84 Aligned_cols=560 Identities=19% Similarity=0.190 Sum_probs=412.5
Q ss_pred CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEee
Q 004704 23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT 102 (735)
Q Consensus 23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~ 102 (735)
+.+|.++++++ .+|..+. +++++|++++|.+++ ++...|.++++|++|++++|.+.. +.+.++..+++|++|+|+
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECC
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECC
Confidence 67999999998 6776664 799999999999985 555789999999999999988754 444457789999999999
Q ss_pred CCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCc
Q 004704 103 KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGK 182 (735)
Q Consensus 103 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 182 (735)
+|++++..+.+|.++++|++|++++|+++ .++...++++++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999777778999999999999999998 55544456999999999999999999888999999999999999999855
Q ss_pred CChhHHH-hcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhh--hCCCCCCEEEccCCCCCCcCcc
Q 004704 183 LPHNMGV-ILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVV--TGCFSLELLDLSNNNFEGQFFS 259 (735)
Q Consensus 183 ~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~ 259 (735)
.+..+.. .+++|++|++++|.+++..|..+..+++|+.|+++++.+.+.....+. -..++|++|++++|.+.+..+.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 5544432 257999999999999988888888888888887777766532222111 1246777777777777776666
Q ss_pred cccCCCC--CCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC-----CCCc
Q 004704 260 EYMNLTR--LRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG-----NVPV 332 (735)
Q Consensus 260 ~~~~l~~--L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~-----~~~~ 332 (735)
.|..++. |++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++. |+.|++++|...+ .+|.
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN-VRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT-CCEEECTTCBCCC------CCE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC-ccEEeccchhhhcccccccccc
Confidence 6666644 777777777777666667777777777777777777666666666665 7777777664432 1222
Q ss_pred ----cCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccc--cCcccccC--CCCCcEEeCCCCcccccCCh
Q 004704 333 ----QLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNG--LIPGELFR--SCKLVTLNLRDNTFSGRIPH 403 (735)
Q Consensus 333 ----~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~--~~~~~~~~--~~~L~~L~l~~n~l~~~~~~ 403 (735)
.|..+++|++|++++|.+.+..+..+ ++++|++|++++|.+.. ..+..+.. .++|+.|++++|++++..|.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 56677777777777777776666555 67777777777776432 22222322 24677777777777766677
Q ss_pred hhhCCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhh
Q 004704 404 QINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE 482 (735)
Q Consensus 404 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 482 (735)
++..+++|++|++++|.+.+.+| ..+..+++|+.|++++|++++..+..+..++.++......
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~---------------- 463 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR---------------- 463 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT----------------
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc----------------
Confidence 77777777777777777765444 5667777777777777777666666665544333211000
Q ss_pred cccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCe
Q 004704 483 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILA 562 (735)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 562 (735)
+..... .........+++|+.|++++|++++..|..|+.+++|++
T Consensus 464 ------n~l~~~-----------------------------~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 464 ------VALKNV-----------------------------DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508 (680)
T ss_dssp ------SCCBCT-----------------------------TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ------cccccc-----------------------------ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence 000000 000000124578999999999999877888999999999
Q ss_pred EeCCCCcCcccCc--------ccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC-CCCCccCC
Q 004704 563 LNLSNNSLSGSIP--------ESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDE 633 (735)
Q Consensus 563 L~Ls~N~l~~~~p--------~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~ 633 (735)
|+|++|++++..+ ..|+++++|++|||++|+++...+..|.++++|+.|++++|++++..|.. ..+..+..
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 9999999996532 24899999999999999999655567999999999999999999766653 45566777
Q ss_pred cccCCCC
Q 004704 634 SSYRGNP 640 (735)
Q Consensus 634 ~~~~gN~ 640 (735)
..+.+|.
T Consensus 589 L~L~~N~ 595 (680)
T 1ziw_A 589 LNLQKNL 595 (680)
T ss_dssp EECTTSC
T ss_pred EECCCCc
Confidence 7777774
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-57 Score=533.80 Aligned_cols=533 Identities=19% Similarity=0.203 Sum_probs=261.9
Q ss_pred CCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccc
Q 004704 3 LERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNT 82 (735)
Q Consensus 3 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~ 82 (735)
.++++++. +|. -.++|++|||++|.+++..|.+|.++++|++|||++|.+.+.++..+|.++++|++|+|++|.+.
T Consensus 11 cs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 11 YRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp ESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred ccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 34555554 343 34566777777777766666666677777777776665545554455666666666666555543
Q ss_pred ccccCCCCCCCCCeeEEEeeCCCCCCCCchh--hhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCc
Q 004704 83 LHVKTENWLPTSQLIVLGLTKCNLNGSYPDF--LLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ 160 (735)
Q Consensus 83 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 160 (735)
.. .+..|..+++|++|+|++|.+++..|.. +.++++|++|+|++|.+++..+...++++++|++|++++|.+++..+
T Consensus 87 ~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 87 FL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp EE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 22 2223445555555555555555433332 45555555555555555433332223345555555555555544444
Q ss_pred CCcCCC--CCcCEEEccCCcCCCcCChhHHHhcc------cCcEEECcCCcCCCCCCcccCC---CCCCCEEECCCcccc
Q 004704 161 LPKAKH--DFLHHLDISCNNFRGKLPHNMGVILQ------KLMYMDISKNCFEGNIPYSAGE---MKELSLLDLSRNYFS 229 (735)
Q Consensus 161 ~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~L~~n~l~ 229 (735)
..+..+ ++|+.|++++|.+.+..|..+.. ++ .|++|++++|.+++..+..+.. ..+++.+.++.+...
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 444433 44455555555444444333222 11 2444444444444433333321 133444444321111
Q ss_pred CccchhhhhCCCCCCEEEccCCCCCCcCcccccCC--CCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCc
Q 004704 230 GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNL--TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPH 307 (735)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~ 307 (735)
.. +..+.+.+.....|..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|.
T Consensus 245 ~~----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 245 AG----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CS----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred cc----------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 00 00112222222233332 4455555555555544455555555555555555555544444
Q ss_pred hhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCC
Q 004704 308 WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCK 386 (735)
Q Consensus 308 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 386 (735)
.+..++. |++|++++|.+++..|..|..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+++. ..+++
T Consensus 309 ~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~ 382 (844)
T 3j0a_A 309 AFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS 382 (844)
T ss_dssp TTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred HhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence 4444444 5555555555554445555555555555555555554444433 455555555555555432 12445
Q ss_pred CcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCC-chhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCC
Q 004704 387 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPI-PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD 465 (735)
Q Consensus 387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 465 (735)
|+.|++++|+++ .+|.. ..+++.|++++|.+.+.. +..+.++++|+.|++++|++++..+....
T Consensus 383 L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------- 447 (844)
T 3j0a_A 383 IPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP----------- 447 (844)
T ss_dssp CSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-----------
T ss_pred cchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc-----------
Confidence 555555555555 33322 234555555555555321 12234555555566655555533221100
Q ss_pred ccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCc
Q 004704 466 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ 545 (735)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 545 (735)
..+++|+.|+|++|.
T Consensus 448 -----------------------------------------------------------------~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 448 -----------------------------------------------------------------SENPSLEQLFLGENM 462 (844)
T ss_dssp -----------------------------------------------------------------CSCTTCCBCEEESCC
T ss_pred -----------------------------------------------------------------ccCCccccccCCCCc
Confidence 012345555555555
Q ss_pred cc-----CCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704 546 LT-----GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 546 l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 620 (735)
++ +..|..|..+++|+.|+|++|++++.+|..|.++++|+.|||++|++++..|..+. ++|+.||+++|++++
T Consensus 463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence 54 22334455555666666666666655555556666666666666666554444444 556666666666665
Q ss_pred cCCCCCCCCccCCcccCCCCCCCCccc
Q 004704 621 RTPDKGQFATFDESSYRGNPSLCAWLI 647 (735)
Q Consensus 621 ~~p~~~~~~~~~~~~~~gN~~lc~~~~ 647 (735)
.+|.. +..+....+.|||+.|+|++
T Consensus 541 ~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 541 PNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred CChhH--hCCcCEEEecCCCccccccc
Confidence 55532 33444455556666665543
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-57 Score=529.16 Aligned_cols=511 Identities=21% Similarity=0.228 Sum_probs=422.6
Q ss_pred CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEee
Q 004704 23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT 102 (735)
Q Consensus 23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~ 102 (735)
+..|.++++++ .+|. -.++|++|||++|.+++..| ..|.++++|++|++++|.....+++.+|..+++|++|+|+
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 46788899999 5665 45899999999999986655 6799999999999999988888888889999999999999
Q ss_pred CCCCCCCCchhhhCCCCCCEEEccCCcCcccCchH-HHhCCCCCcEEECcCCcCcccCc-CCcCCCCCcCEEEccCCcCC
Q 004704 103 KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTW-LLRNNPKLEVLLLKNNSFSGILQ-LPKAKHDFLHHLDISCNNFR 180 (735)
Q Consensus 103 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~ 180 (735)
+|++.+..|.+|.++++|++|+|++|.+++.+|.. .++++++|++|++++|.+++..+ ..+.++++|++|++++|.++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99999999999999999999999999998766653 35689999999999999998765 46899999999999999999
Q ss_pred CcCChhHHHhc--ccCcEEECcCCcCCCCCCcccCCCCC------CCEEECCCccccCccchhhhhCC--CCCCEEEccC
Q 004704 181 GKLPHNMGVIL--QKLMYMDISKNCFEGNIPYSAGEMKE------LSLLDLSRNYFSGGLSQSVVTGC--FSLELLDLSN 250 (735)
Q Consensus 181 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~ 250 (735)
+..+..+.. + ++|+.|+++.|.+.+..|..++.+++ |+.|++++|.+++.++..+.... ..++.+.++.
T Consensus 162 ~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 777777765 4 79999999999999888887776665 89999999988877766654332 4677777775
Q ss_pred CCCCCcCcccccCCCCCCEEEccccccCccccccccCC--CCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC
Q 004704 251 NNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSS--TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 328 (735)
Q Consensus 251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~--~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 328 (735)
+.+... +..+.+.+.....+..+ ++|+.|++++|.+.+..|..+..++. |+.|++++|++++
T Consensus 241 ~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 241 HIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINK 304 (844)
T ss_dssp SCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCC-CCEEEEESCCCCE
T ss_pred cccccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCC-CCEEECCCCcCCC
Confidence 543311 12233443444455444 78999999999999777888888877 9999999999998
Q ss_pred CCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhC
Q 004704 329 NVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 407 (735)
Q Consensus 329 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 407 (735)
..|..|.++++|++|++++|.+++..+..+ .+++|+.|++++|.+.+..+..|..+++|++|++++|.+++ ++ .
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~ 379 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----F 379 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----S
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----C
Confidence 889999999999999999999998877766 89999999999999998888889999999999999999984 32 3
Q ss_pred CCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCC
Q 004704 408 HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG 487 (735)
Q Consensus 408 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (735)
+++|+.|++++|+++ .+|.. ..+++.|++++|++++.....+.
T Consensus 380 ~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~--------------------------------- 422 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFL--------------------------------- 422 (844)
T ss_dssp CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHH---------------------------------
T ss_pred CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhh---------------------------------
Confidence 789999999999998 55553 46799999999999853221110
Q ss_pred CCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCc-cccccccCCeEeCC
Q 004704 488 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS-DIGQLQAILALNLS 566 (735)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~-~l~~l~~L~~L~Ls 566 (735)
..+++|+.|+|++|++++..+. .+..+++|+.|+|+
T Consensus 423 -------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 423 -------------------------------------------LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp -------------------------------------------TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred -------------------------------------------hcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 1246889999999999965443 46678999999999
Q ss_pred CCcCc-----ccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCCccCCcccCCCCC
Q 004704 567 NNSLS-----GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPS 641 (735)
Q Consensus 567 ~N~l~-----~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~ 641 (735)
+|.++ +..|..|.++++|+.|||++|++++.+|..+..+++|+.|++++|++++.+|.... ..+....+.+|..
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 99997 45567799999999999999999999999999999999999999999987775433 4555555555543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-57 Score=514.28 Aligned_cols=530 Identities=22% Similarity=0.226 Sum_probs=386.4
Q ss_pred cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81 (735)
Q Consensus 2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~ 81 (735)
|.++.+++ .+|..+.. ++++|+|++|.+++..|.+|+++++|++|++++|++++..| .+|.++++|++|++++|.+
T Consensus 18 ~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 18 NCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp ECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcc
Confidence 34455555 45665553 68888888888887778888888888888888888876555 5688888888888887776
Q ss_pred cccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCccc-CchHHHhCCCCCcEEECcCCcCcccCc
Q 004704 82 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-FPTWLLRNNPKLEVLLLKNNSFSGILQ 160 (735)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~ 160 (735)
... .+..+..+++|++|++++|++++..+..+.++++|++|++++|++++. .|.. . .+++|++|++++|.+++..+
T Consensus 94 ~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~-~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 94 IFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-F-PTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp SEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-C-CCTTCCEEECCSSCCCEECH
T ss_pred ccc-ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc-c-CCcccCEEEcccCcccccCh
Confidence 543 334577778888888888888876677778888888888888887742 2332 2 47788888888888877777
Q ss_pred CCcCCCCCcC--EEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCcccc----Cccch
Q 004704 161 LPKAKHDFLH--HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFS----GGLSQ 234 (735)
Q Consensus 161 ~~~~~~~~L~--~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~ 234 (735)
..+..+++|+ +|++++|.+++..|.. +. ..+|++|++++|. .++..+..+++++...+....+. ..++.
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGA-FD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTT-TT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhhhcccceeEEecCCCccCccChhH-hh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccCh
Confidence 7777777777 7788888877544443 33 3577888887775 23333444444433333222111 12333
Q ss_pred hhhhCCC--CCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhh
Q 004704 235 SVVTGCF--SLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 312 (735)
Q Consensus 235 ~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~ 312 (735)
..+.++. +|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 3333333 6888888888888777777888888888888888887 677778888888888888888886667777777
Q ss_pred cccCcEEEcCCCcCCCCCCc-cCCCCCCCCEEEcccCCCCccC--CCcc-CCCCccEEEccCCcccccCcccccCCCCCc
Q 004704 313 SSELEILSMSKNHLEGNVPV-QLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV 388 (735)
Q Consensus 313 ~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 388 (735)
+. |++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+ .+++|++|++++|.+.+..|..+..+++|+
T Consensus 325 ~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 325 PS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp TT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred Cc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 76 88888888888755544 4788888888888888887654 3333 778888888888888877777888888888
Q ss_pred EEeCCCCcccccCCh-hhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCC---chhhcccccccccC
Q 004704 389 TLNLRDNTFSGRIPH-QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP---PCFANVLSWRVGSD 464 (735)
Q Consensus 389 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~l~~~~~ 464 (735)
.|++++|++++..+. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++... ..+.
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---------- 473 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ---------- 473 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc----------
Confidence 888888888766543 47778888888888888887777778888888888888888764211 1111
Q ss_pred CccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCC
Q 004704 465 DVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCN 544 (735)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 544 (735)
.+++|+.|++++|
T Consensus 474 -------------------------------------------------------------------~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 474 -------------------------------------------------------------------TLGRLEILVLSFC 486 (606)
T ss_dssp -------------------------------------------------------------------GCTTCCEEECTTS
T ss_pred -------------------------------------------------------------------cCCCccEEECCCC
Confidence 2356777888888
Q ss_pred cccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCC
Q 004704 545 QLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623 (735)
Q Consensus 545 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 623 (735)
++++..|..|+.+++|+.|+|++|++++.+|+.|.+++.| .|||++|++++.+|..+..+++|+.|++++|+++|.++
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8887777788888888888888888888888888888888 88888888887777777888888888888777776554
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-55 Score=500.41 Aligned_cols=534 Identities=22% Similarity=0.217 Sum_probs=451.3
Q ss_pred CCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEe
Q 004704 22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGL 101 (735)
Q Consensus 22 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L 101 (735)
-++++.++..++ .+|..+. +.+++|++++|.+++..| ..|.++++|++|++++|.+.. +.+.+|..+++|++|+|
T Consensus 14 ~~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccce-eChhhccCccccCeeeC
Confidence 457899999888 6777665 479999999999986555 689999999999999987754 55566899999999999
Q ss_pred eCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCC
Q 004704 102 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRG 181 (735)
Q Consensus 102 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 181 (735)
++|++++..|..+.++++|++|++++|+++ .++...+.++++|++|++++|.+++.....+..+++|++|++++|.+++
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred CCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 999999999999999999999999999998 4433335689999999999999998765566669999999999999995
Q ss_pred cCChhHHHhcccCc--EEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCC-----
Q 004704 182 KLPHNMGVILQKLM--YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE----- 254 (735)
Q Consensus 182 ~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~----- 254 (735)
..|..+. .+++|+ .|++++|.+.+..|..+ ...+|+.|++++|.. ++. .+.++..+....+....+.
T Consensus 168 ~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 168 LSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp ECHHHHH-TTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCCC
T ss_pred cChhhhh-hhcccceeEEecCCCccCccChhHh-hhccccccccCCchh---HHH-Hhhhccccchhheechhhcccccc
Confidence 4455454 488999 89999999997666554 457899999999862 233 3344555544444332222
Q ss_pred CcCcccccCCC--CCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCc
Q 004704 255 GQFFSEYMNLT--RLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 332 (735)
Q Consensus 255 ~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~ 332 (735)
...+..+..+. +|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..++. |++|++++|++.+..|.
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~-L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTT-CCEEECTTCCCSBGGGG
T ss_pred ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccccc-CCEEECccCCcCcCchh
Confidence 22233444443 7999999999999888888999999999999999998 88988988887 99999999999988888
Q ss_pred cCCCCCCCCEEEcccCCCCccCCCc-c-CCCCccEEEccCCcccccC--cccccCCCCCcEEeCCCCcccccCChhhhCC
Q 004704 333 QLNNLERLRILDISENRLSGPIASS-L-NLSSVEHLSLQKNALNGLI--PGELFRSCKLVTLNLRDNTFSGRIPHQINEH 408 (735)
Q Consensus 333 ~l~~l~~L~~L~L~~n~l~~~~~~~-~-~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 408 (735)
.+..+++|++|++++|.+.+.++.. + .+++|++|++++|.+.+.. +..+..+++|++|++++|++++..|..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 9999999999999999998666543 4 8999999999999998776 7788999999999999999998889999999
Q ss_pred CCccEEEccCCcCCCCCch-hhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCC
Q 004704 409 SNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG 487 (735)
Q Consensus 409 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (735)
++|++|++++|.+.+..+. .+..+++|+.|++++|++++..|..+..
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------- 447 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-------------------------------- 447 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT--------------------------------
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC--------------------------------
Confidence 9999999999999977654 4899999999999999998777766544
Q ss_pred CCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCC---CCccccccccCCeEe
Q 004704 488 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE---IPSDIGQLQAILALN 564 (735)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---~p~~l~~l~~L~~L~ 564 (735)
+++|+.|++++|++++. .+..++.+++|++|+
T Consensus 448 ---------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 448 ---------------------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp ---------------------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred ---------------------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 36788999999999872 346799999999999
Q ss_pred CCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC-CCCCccCCcccCCCCCCC
Q 004704 565 LSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATFDESSYRGNPSLC 643 (735)
Q Consensus 565 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~gN~~lc 643 (735)
+++|++++.+|..|+++++|++|||++|++++.+|..+..++.| +|++++|++++.+|.. ..+..+....+.|||+.|
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999999999999999999999999999999999999999 9999999999888863 455667788899999999
Q ss_pred Cccc
Q 004704 644 AWLI 647 (735)
Q Consensus 644 ~~~~ 647 (735)
+|+.
T Consensus 562 ~c~~ 565 (606)
T 3t6q_A 562 TCSN 565 (606)
T ss_dssp SGGG
T ss_pred cCCc
Confidence 8864
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-55 Score=500.10 Aligned_cols=532 Identities=19% Similarity=0.188 Sum_probs=364.5
Q ss_pred CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEee
Q 004704 23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLT 102 (735)
Q Consensus 23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~ 102 (735)
++++.+++.++ .+|..+. ++|++|++++|++++..+ ..|.++++|++|++++|.+. .+++.+|..+++|++|+|+
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECC
Confidence 45566666555 4444332 556666666666553333 44556666666666655443 2333345666666777777
Q ss_pred CCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcc-cCcCCcCCCCCcCEEEccCCcCCC
Q 004704 103 KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSG-ILQLPKAKHDFLHHLDISCNNFRG 181 (735)
Q Consensus 103 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~Ls~n~l~~ 181 (735)
+|++++..|.+|.++++|++|++++|.++ .++...++++++|++|++++|.+++ ..|..+.++++|++|++++|.+++
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 77777666777777777777777777776 3332224567777777777777765 346667777777777777777775
Q ss_pred cCChhHHHhcccCc----EEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCC--
Q 004704 182 KLPHNMGVILQKLM----YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG-- 255 (735)
Q Consensus 182 ~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-- 255 (735)
..|..+.. +++|+ +|++++|.+++..+.. ....+|++|++++|.+.+...+..+.+++.|+.+++..+.+.+
T Consensus 168 ~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 168 ITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp ECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred cChhhhhh-hhccccccceeeccCCCcceeCccc-ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 44444443 44443 6777777777433333 3334777777777777654455555677777777765443321
Q ss_pred ----cCcccccCCC--CCCEEEc-cccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC
Q 004704 256 ----QFFSEYMNLT--RLRHLYF-ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 328 (735)
Q Consensus 256 ----~~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 328 (735)
..+..+..+. +++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+..++. |++|++++|.+ +
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~-L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFK-WQSLSIIRCQL-K 320 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCC-CSEEEEESCCC-S
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hcccccc-CCEEEcccccC-c
Confidence 1112222222 3555666 56667766666 777888888888888886 566 6666665 88888888888 4
Q ss_pred CCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCccccc--CcccccCCCCCcEEeCCCCcccccCChhhh
Q 004704 329 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL--IPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406 (735)
Q Consensus 329 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 406 (735)
.+| .+ .+++|++|++++|+..+.. ....+++|+.|++++|.+++. .+..+..+++|++|++++|.+++ +|..+.
T Consensus 321 ~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~ 396 (606)
T 3vq2_A 321 QFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396 (606)
T ss_dssp SCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred ccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence 666 44 7888888888888655443 333788888888888888765 36777888888888888888874 567788
Q ss_pred CCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhccc
Q 004704 407 EHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGS 485 (735)
Q Consensus 407 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (735)
.+++|++|++++|.+.+..| ..+..+++|+.|++++|++++..|..+..+
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------------------------- 447 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL----------------------------- 447 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-----------------------------
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-----------------------------
Confidence 88888888888888887766 678888888888888888887666655442
Q ss_pred CCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccC-CCCccccccccCCeEe
Q 004704 486 LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAILALN 564 (735)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~l~~l~~L~~L~ 564 (735)
++|+.|++++|++++ .+|..++.+++|++|+
T Consensus 448 ------------------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 448 ------------------------------------------------TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp ------------------------------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred ------------------------------------------------CCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 567778888888886 3678888888888888
Q ss_pred CCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCC-ccCCcccCCCCCCC
Q 004704 565 LSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFA-TFDESSYRGNPSLC 643 (735)
Q Consensus 565 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~~~~~~~gN~~lc 643 (735)
|++|++++.+|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++...+....+. .+....+.|||+.|
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 88888888888888888888888888888888888888888888888888888885444333333 36667788888888
Q ss_pred Ccccc
Q 004704 644 AWLIQ 648 (735)
Q Consensus 644 ~~~~~ 648 (735)
+|+..
T Consensus 560 ~c~~~ 564 (606)
T 3vq2_A 560 ICEHQ 564 (606)
T ss_dssp SSTTH
T ss_pred CCccH
Confidence 77653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-54 Score=492.35 Aligned_cols=527 Identities=20% Similarity=0.198 Sum_probs=450.7
Q ss_pred cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81 (735)
Q Consensus 2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~ 81 (735)
+.++++++. +|..+. +++++|+|++|.+++..+.+|+++++|++|++++|++++..| .+|.++++|++|++++|.+
T Consensus 17 ~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 17 QCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp ECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC
T ss_pred EccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcc
Confidence 566777774 666555 899999999999998888899999999999999999986555 6799999999999999887
Q ss_pred cccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcc-cCchHHHhCCCCCcEEECcCCcCcccCc
Q 004704 82 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVG-NFPTWLLRNNPKLEVLLLKNNSFSGILQ 160 (735)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 160 (735)
.. +.+..+..+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+ +++++|++|++++|.+++..+
T Consensus 93 ~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 93 QS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECT
T ss_pred cc-cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecCh
Confidence 54 444568899999999999999998888889999999999999999985 568766 489999999999999999888
Q ss_pred CCcCCCCCcC----EEEccCCcCCCcCChhHHHhcccCcEEECcCCcCC-CCCCcccCCCCCCCEEECCCccccC-----
Q 004704 161 LPKAKHDFLH----HLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE-GNIPYSAGEMKELSLLDLSRNYFSG----- 230 (735)
Q Consensus 161 ~~~~~~~~L~----~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~----- 230 (735)
..+..+.+|+ +|++++|.++ .++...+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 8887766655 8999999998 6676666644 8999999999886 3567788999999998886554432
Q ss_pred ccchhhhhCCC--CCCEEEc-cCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCc
Q 004704 231 GLSQSVVTGCF--SLELLDL-SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPH 307 (735)
Q Consensus 231 ~~~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~ 307 (735)
.++...+.++. .++.+++ ..|.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|.
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~ 324 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT 324 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc
Confidence 12233333333 4667777 67788877776 899999999999999997 556 788999999999999999 58884
Q ss_pred hhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccC--CCcc-CCCCccEEEccCCcccccCcccccCC
Q 004704 308 WMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRS 384 (735)
Q Consensus 308 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~ 384 (735)
+ .++. |++|++++|+..+.. .+..+++|++|++++|++++.. +..+ .+++|++|++++|.+.+ +|..+..+
T Consensus 325 -~-~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l 398 (606)
T 3vq2_A 325 -L-DLPF-LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398 (606)
T ss_dssp -C-CCSS-CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred -C-CCCc-cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCC
Confidence 4 6766 999999999665433 6779999999999999998763 4444 89999999999999986 45889999
Q ss_pred CCCcEEeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCC-CCchhhcccccccc
Q 004704 385 CKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVG 462 (735)
Q Consensus 385 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~ 462 (735)
++|+.|++++|++++..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++. +|..+..
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------- 471 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN------- 471 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-------
Confidence 999999999999998877 6899999999999999999998999999999999999999999863 5554443
Q ss_pred cCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECC
Q 004704 463 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS 542 (735)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 542 (735)
+++|+.|+++
T Consensus 472 ----------------------------------------------------------------------l~~L~~L~Ls 481 (606)
T 3vq2_A 472 ----------------------------------------------------------------------TTNLTFLDLS 481 (606)
T ss_dssp ----------------------------------------------------------------------CTTCCEEECT
T ss_pred ----------------------------------------------------------------------CCCCCEEECC
Confidence 3678899999
Q ss_pred CCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCC-CCCeEEcccCcCccc
Q 004704 543 CNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN-FLSIFNVSYNNLSGR 621 (735)
Q Consensus 543 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~ 621 (735)
+|++++..|..++.+++|++|+|++|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|++|++++|++.+.
T Consensus 482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999 6888899997 599999999999998
Q ss_pred CCC
Q 004704 622 TPD 624 (735)
Q Consensus 622 ~p~ 624 (735)
++.
T Consensus 561 c~~ 563 (606)
T 3vq2_A 561 CEH 563 (606)
T ss_dssp STT
T ss_pred Ccc
Confidence 774
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-50 Score=452.99 Aligned_cols=492 Identities=20% Similarity=0.219 Sum_probs=348.2
Q ss_pred CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEE
Q 004704 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL 99 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 99 (735)
+++++|+|++|++++..+.+|+++++|++|++++|++++..+ ..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L----------------------- 83 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLIL----------------------- 83 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEEC-----------------------
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeC-----------------------
Confidence 456677777777666656666667777777777666654322 34555555555554
Q ss_pred EeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCc
Q 004704 100 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNN 178 (735)
Q Consensus 100 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~ 178 (735)
++|++++..|.+|.++++|++|++++|+++ .++...++++++|++|++++|.+++. .|..+.++++|++|++++|.
T Consensus 84 --~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 84 --TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp --TTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred --cCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 455555444555556666666666666555 33332234556666666666665553 35556666666666666666
Q ss_pred CCCcCChhHHHhcccC----cEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCC
Q 004704 179 FRGKLPHNMGVILQKL----MYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFE 254 (735)
Q Consensus 179 l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 254 (735)
+++..+..+.. +++| +.+++++|.+.+..|..+... +|+.|++++|..........+.++..++...+....+.
T Consensus 161 l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~ 238 (570)
T 2z63_A 161 IQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238 (570)
T ss_dssp CCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC
T ss_pred cceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc
Confidence 66433333333 5555 666677766665555544443 57777776665443333334455666665554332211
Q ss_pred ------CcCcccccCCC--CCCEEEcccc-ccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCc
Q 004704 255 ------GQFFSEYMNLT--RLRHLYFENN-NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 325 (735)
Q Consensus 255 ------~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~ 325 (735)
......+..++ .++.++++++ .+.+..+..+..+++|++|++++|.++ .+|..+... . |++|++++|.
T Consensus 239 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~-L~~L~l~~n~ 315 (570)
T 2z63_A 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G-WQHLELVNCK 315 (570)
T ss_dssp CCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C-CSEEEEESCB
T ss_pred CchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C-ccEEeeccCc
Confidence 11112222222 3566777776 666677788888889999999998887 678877777 4 9999999998
Q ss_pred CCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccC--cccccCCCCCcEEeCCCCcccccCCh
Q 004704 326 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLI--PGELFRSCKLVTLNLRDNTFSGRIPH 403 (735)
Q Consensus 326 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~ 403 (735)
+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+
T Consensus 316 ~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~- 390 (570)
T 2z63_A 316 FG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS- 390 (570)
T ss_dssp CS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-
T ss_pred cc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-
Confidence 88 4554 4678899999999988766554 57889999999999988654 6778889999999999999985544
Q ss_pred hhhCCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhh
Q 004704 404 QINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIE 482 (735)
Q Consensus 404 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 482 (735)
.+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++++..|..+..
T Consensus 391 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------- 443 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------- 443 (570)
T ss_dssp EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------
T ss_pred cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc---------------------------
Confidence 48889999999999999987665 56888999999999999998777665544
Q ss_pred cccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCccc-CCCCccccccccCC
Q 004704 483 FGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT-GEIPSDIGQLQAIL 561 (735)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~~L~ 561 (735)
+++|+.|++++|.++ +.+|..++.+++|+
T Consensus 444 --------------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 444 --------------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp --------------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred --------------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 367888999999997 57899999999999
Q ss_pred eEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC
Q 004704 562 ALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK 625 (735)
Q Consensus 562 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 625 (735)
+|++++|++++..|..|+++++|++|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 9999999999888999999999999999999999888888999999999999999999988864
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-48 Score=441.45 Aligned_cols=491 Identities=20% Similarity=0.210 Sum_probs=395.7
Q ss_pred CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccc
Q 004704 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN 80 (735)
Q Consensus 1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~ 80 (735)
|||++|.+++..+.+|.++++|++|+|++|++++..|.+|+++++|++|++++|++++..| ..|.++++|++|++++|.
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCccccccccccccc
Confidence 6899999999888999999999999999999998888899999999999999999986544 679999999999999887
Q ss_pred ccccccCCCCCCCCCeeEEEeeCCCCCC-CCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCC----cEEECcCCcC
Q 004704 81 NTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKL----EVLLLKNNSF 155 (735)
Q Consensus 81 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L----~~L~L~~n~l 155 (735)
+.. ++...+..+++|++|++++|.+.+ .+|..+.++++|++|++++|++++..|.. ++.+++| ++|++++|.+
T Consensus 112 l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 112 LAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEECTTCCC
T ss_pred ccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhcccCCCCc
Confidence 644 344457888999999999999887 46889999999999999999998544443 3466777 8899999998
Q ss_pred cccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchh
Q 004704 156 SGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQS 235 (735)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 235 (735)
++..+..+... +|++|++++|.............++.++...+....+. ....++. ++..
T Consensus 190 ~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~--------~~~~l~~-----------~~~~ 249 (570)
T 2z63_A 190 NFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR--------NEGNLEK-----------FDKS 249 (570)
T ss_dssp CEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC--------CCSSCEE-----------CCTT
T ss_pred eecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc--------Cchhhhh-----------cchh
Confidence 88877777665 78888888875432222222233555555544332221 1111211 1111
Q ss_pred hhhCCC--CCCEEEccCC-CCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhh
Q 004704 236 VVTGCF--SLELLDLSNN-NFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF 312 (735)
Q Consensus 236 ~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~ 312 (735)
.+.++. .++.++++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+
T Consensus 250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l 324 (570)
T 2z63_A 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKL 324 (570)
T ss_dssp TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBC
T ss_pred hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccc
Confidence 122222 3567777777 666777888888999999999999988 677778888 9999999999998 6776 355
Q ss_pred cccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccC--CCcc-CCCCccEEEccCCcccccCcccccCCCCCcE
Q 004704 313 SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--ASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVT 389 (735)
Q Consensus 313 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 389 (735)
+. |+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+ .+++|+.|++++|.+.+..+. +..+++|++
T Consensus 325 ~~-L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~ 400 (570)
T 2z63_A 325 KS-LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEH 400 (570)
T ss_dssp SS-CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCE
T ss_pred cc-cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCE
Confidence 55 99999999998866554 67899999999999988654 3333 899999999999999876554 899999999
Q ss_pred EeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCC-CCCCchhhcccccccccCCcc
Q 004704 390 LNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS-GSIPPCFANVLSWRVGSDDVL 467 (735)
Q Consensus 390 L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~ 467 (735)
|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+.++++|+.|++++|+++ +.+|..+..
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~------------ 468 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------ 468 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc------------
Confidence 9999999987665 57889999999999999999889999999999999999999987 456654443
Q ss_pred CCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCccc
Q 004704 468 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 547 (735)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 547 (735)
+++|+.|++++|+++
T Consensus 469 -----------------------------------------------------------------l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 469 -----------------------------------------------------------------LRNLTFLDLSQCQLE 483 (570)
T ss_dssp -----------------------------------------------------------------CTTCCEEECTTSCCC
T ss_pred -----------------------------------------------------------------ccCCCEEECCCCccc
Confidence 367889999999999
Q ss_pred CCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCc
Q 004704 548 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP 600 (735)
Q Consensus 548 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 600 (735)
+..|..++.+++|++|++++|++++.+|..|+++++|+.|++++|.+++..|.
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88899999999999999999999998888999999999999999999987764
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-48 Score=439.36 Aligned_cols=483 Identities=20% Similarity=0.180 Sum_probs=327.2
Q ss_pred CCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEe
Q 004704 22 LKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGL 101 (735)
Q Consensus 22 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L 101 (735)
..+.|.+++.++ .+|..+. ++|++|++++|++++..| ..|.+ +++|++|++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~-------------------------l~~L~~L~L 57 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGH-GDLRA-------------------------CANLQVLIL 57 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECS-STTSS-------------------------CTTCCEEEC
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccCh-hhhhc-------------------------CCcccEEEC
Confidence 334566666666 4444332 566666666666654333 22333 334444444
Q ss_pred eCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCcCC
Q 004704 102 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNNFR 180 (735)
Q Consensus 102 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~ 180 (735)
++|++++..|.+|.++++|++|++++|+++ .++...++++++|++|++++|.+++. .+..+..+++|++|++++|.+.
T Consensus 58 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 58 KSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc
Confidence 444455455566667777777777777776 34444345777777777777777653 3456778888888888888754
Q ss_pred CcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcC---
Q 004704 181 GKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF--- 257 (735)
Q Consensus 181 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--- 257 (735)
+.+|...+..+++|++|++++|.+++..|..++.+++|++|+++.|.+. .++..++..+++|++|++++|.+++..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (549)
T 2z81_A 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP 215 (549)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC
T ss_pred cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc
Confidence 4666544445788888999888888888888888999999999998876 677777777899999999999888642
Q ss_pred cccccCCCCCCEEEccccccCcccc----ccccCCCCCCEEEeeCCccCCCC------CchhhhhcccCcEEEcCCCcCC
Q 004704 258 FSEYMNLTRLRHLYFENNNFSGKIK----DGLLSSTSLQVLDISNNMLSGHI------PHWMGNFSSELEILSMSKNHLE 327 (735)
Q Consensus 258 ~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~~------p~~~~~~~~~L~~L~l~~n~l~ 327 (735)
......+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+.. ...+..+.. ++.|++.++.+.
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~i~ 294 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK-VETVTIRRLHIP 294 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT-CCEEEEESCBCS
T ss_pred cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc-cccccccccccc
Confidence 1233457889999999988875443 33456788899999988876421 112233334 777777777655
Q ss_pred CCC-----CccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcc---cccCCCCCcEEeCCCCccc
Q 004704 328 GNV-----PVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPG---ELFRSCKLVTLNLRDNTFS 398 (735)
Q Consensus 328 ~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~ 398 (735)
... +..+...++|+.|++++|.+...+...+ .+++|++|++++|.+.+.+|. .+..+++|++|++++|+++
T Consensus 295 ~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp CGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred hhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 321 1112234567788888777764433333 577788888888877765532 3566777888888888777
Q ss_pred ccCC--hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcc
Q 004704 399 GRIP--HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 476 (735)
Q Consensus 399 ~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 476 (735)
+..+ ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|..
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~------------------------ 428 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC------------------------ 428 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT------------------------
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch------------------------
Confidence 4432 45677778888888888777 567777777788888888887752 2221
Q ss_pred cchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccc
Q 004704 477 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 556 (735)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 556 (735)
..++|+.||+++|++++.+ +.
T Consensus 429 -------------------------------------------------------~~~~L~~L~Ls~N~l~~~~----~~ 449 (549)
T 2z81_A 429 -------------------------------------------------------IPQTLEVLDVSNNNLDSFS----LF 449 (549)
T ss_dssp -------------------------------------------------------SCTTCSEEECCSSCCSCCC----CC
T ss_pred -------------------------------------------------------hcCCceEEECCCCChhhhc----cc
Confidence 1135677888888887532 46
Q ss_pred cccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCC
Q 004704 557 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623 (735)
Q Consensus 557 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 623 (735)
+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+..+++|+.|++++|+++|.+|
T Consensus 450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 778888888888887 5665 4677888888888888887777778888888888888888776665
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-47 Score=431.10 Aligned_cols=484 Identities=17% Similarity=0.205 Sum_probs=354.0
Q ss_pred cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81 (735)
Q Consensus 2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~ 81 (735)
|.+++.++. +|..+. ++|++|+|++|++++..|.+|.++++|++|++++|++++..| .+|.++++|++|++++|.+
T Consensus 11 ~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCcc
Confidence 567788874 666554 899999999999998888999999999999999999986555 6799999999999999887
Q ss_pred cccccCCCCCCCCCeeEEEeeCCCCCC-CCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCc
Q 004704 82 TLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQ 160 (735)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 160 (735)
... +...+..+++|++|++++|++++ ..|..+.++++|++|++++|++.+.+|...+.++++|++|++++|.+++..+
T Consensus 87 ~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 SSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred Ccc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 543 33346788999999999999986 3567889999999999999986567776556789999999999999999888
Q ss_pred CCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCC--Cc-ccCCCCCCCEEECCCccccCccchhh-
Q 004704 161 LPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNI--PY-SAGEMKELSLLDLSRNYFSGGLSQSV- 236 (735)
Q Consensus 161 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~- 236 (735)
..+..+++|++|+++.|.+. .+|..++..+++|++|++++|.+++.. |. ....+++|+.|++++|.+++..+..+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 89999999999999999886 677777666889999999999988632 21 23457888999999888876544433
Q ss_pred --hhCCCCCCEEEccCCCCCCcC------cccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCch
Q 004704 237 --VTGCFSLELLDLSNNNFEGQF------FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHW 308 (735)
Q Consensus 237 --~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~ 308 (735)
...+.+|+.+++++|.+.+.. ...+..+++++.|++.++.+.... .+. .++..
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~-----------------~l~~~ 305 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY--LFY-----------------DLSTV 305 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG--GSC-----------------CCCHH
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh--hcc-----------------cchhh
Confidence 234567788888777665421 112344555555555555443210 000 01111
Q ss_pred hhhhcccCcEEEcCCCcCCCCCCccC-CCCCCCCEEEcccCCCCccCC---C-ccCCCCccEEEccCCcccccCc--ccc
Q 004704 309 MGNFSSELEILSMSKNHLEGNVPVQL-NNLERLRILDISENRLSGPIA---S-SLNLSSVEHLSLQKNALNGLIP--GEL 381 (735)
Q Consensus 309 ~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~--~~~ 381 (735)
.... .+|+.|++++|++. .+|..+ ..+++|++|++++|++++..+ . ...+++|+.|++++|.+++..+ ..+
T Consensus 306 ~~~~-~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 306 YSLL-EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp HHHS-TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred hhhc-ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence 1111 22555555555544 333332 344555555555555554321 1 1245666666666666654422 446
Q ss_pred cCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhccccccc
Q 004704 382 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 461 (735)
Q Consensus 382 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 461 (735)
..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+ .++|+.|++++|++++.++
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~----------- 448 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL----------- 448 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC-----------
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc-----------
Confidence 77888888888888887 677778888888899999888873 44433 2689999999999875321
Q ss_pred ccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEEC
Q 004704 462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL 541 (735)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 541 (735)
.+++|+.|+|
T Consensus 449 ----------------------------------------------------------------------~l~~L~~L~L 458 (549)
T 2z81_A 449 ----------------------------------------------------------------------FLPRLQELYI 458 (549)
T ss_dssp ----------------------------------------------------------------------CCTTCCEEEC
T ss_pred ----------------------------------------------------------------------cCChhcEEEC
Confidence 1367888999
Q ss_pred CCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704 542 SCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 542 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 599 (735)
++|+++ .+|. .+.+++|++|+|++|++++.+|+.|+.+++|+.||+++|++++..|
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999998 7776 5789999999999999999999999999999999999999998766
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-48 Score=444.25 Aligned_cols=436 Identities=19% Similarity=0.260 Sum_probs=286.3
Q ss_pred CCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcC------cc------cCchHHHhCCCCCcEEECcCCcCcccCcC
Q 004704 94 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKL------VG------NFPTWLLRNNPKLEVLLLKNNSFSGILQL 161 (735)
Q Consensus 94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 161 (735)
..++.|+|+++++.|.+|..++++++|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 4789999999999999999999999999999999976 23 444433 23344 55555555554443
Q ss_pred CcCC-------------------CCCcCEEEcc--CCcCCCcCChhHHHhcccCcEEECcCCcCCCC-------------
Q 004704 162 PKAK-------------------HDFLHHLDIS--CNNFRGKLPHNMGVILQKLMYMDISKNCFEGN------------- 207 (735)
Q Consensus 162 ~~~~-------------------~~~L~~L~Ls--~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------- 207 (735)
.+.. ...++.+.+. .|++++ +|..++. +++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccch
Confidence 3321 1112222222 456665 6666555 66777777777777664
Q ss_pred ----CCcccC--CCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC-CCC-cCcccccCC------CCCCEEEcc
Q 004704 208 ----IPYSAG--EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNL------TRLRHLYFE 273 (735)
Q Consensus 208 ----~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~ 273 (735)
+|..++ ++++|++|++++|.+.+.+|..+ .++++|++|++++|. +++ .+|..+..+ ++|++|+++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 677766 77777777777777766666544 457777777777776 666 566666554 677777777
Q ss_pred ccccCccccc--cccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCC-CCEEEcccCCC
Q 004704 274 NNNFSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRL 350 (735)
Q Consensus 274 ~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l 350 (735)
+|+++ .+|. .+..+++|++|++++|.++|.+| .+..++. |++|++++|+++ .+|..+..+++ |++|++++|++
T Consensus 314 ~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 314 YNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp SSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred CCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 77777 6666 67777777777777777776677 6666665 777777777777 56666777777 77777777777
Q ss_pred CccCCCcc-C--CCCccEEEccCCcccccCccccc-------CCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCc
Q 004704 351 SGPIASSL-N--LSSVEHLSLQKNALNGLIPGELF-------RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH 420 (735)
Q Consensus 351 ~~~~~~~~-~--l~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 420 (735)
+. +|..+ . +++|+.|++++|.+.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 390 ~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 KY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred cc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 63 33333 2 34677777777777776666666 56677777777777773333344556777777777777
Q ss_pred CCCCCchh-hhcC-------CCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCC
Q 004704 421 LQGPIPDQ-LCQL-------QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSS 492 (735)
Q Consensus 421 l~~~~~~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (735)
++ .+|.. +... ++|+.|++++|+++ .+|..+..
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------------------- 509 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------------------------------------- 509 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-------------------------------------
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-------------------------------------
Confidence 77 34433 3222 26777777777776 45543320
Q ss_pred ccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeC------C
Q 004704 493 NTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNL------S 566 (735)
Q Consensus 493 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L------s 566 (735)
..+++|+.|+|++|++++ +|..++.+++|+.|+| +
T Consensus 510 --------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 510 --------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp --------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred --------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 012566677777777775 7777777777777777 4
Q ss_pred CCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccC
Q 004704 567 NNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRT 622 (735)
Q Consensus 567 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 622 (735)
+|++.+.+|..++++++|++|||++|++ +.+|..+. ++|+.||+++|++....
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 5666777777777777777777777777 46666655 67777777777766443
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.9e-46 Score=423.56 Aligned_cols=551 Identities=19% Similarity=0.186 Sum_probs=386.0
Q ss_pred EEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeC
Q 004704 24 ILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTK 103 (735)
Q Consensus 24 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 103 (735)
+.+=++-+++ .+|..+- +++++|||++|+|++ +|..+|.++++|++|+|++|.+. .+++.+|..+++|++|+|++
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccC
Confidence 3444444455 3444331 246666666666653 33345666666666666655442 34445566677777777777
Q ss_pred CCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCcCCCc
Q 004704 104 CNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNNFRGK 182 (735)
Q Consensus 104 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~ 182 (735)
|++++..+.+|.++++|++|+|++|+++ .+|...++++++|++|++++|.+++. .+..+..+++|++|++++|++++.
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 7777666677788888888888888877 56655556778888888888887664 456667778888888888888755
Q ss_pred CChhHHHhccc----CcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC------
Q 004704 183 LPHNMGVILQK----LMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN------ 252 (735)
Q Consensus 183 ~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~------ 252 (735)
.+..+.. +++ ...++++.|.+.. ++........++.+++.+|.....+....+.++..++...+..+.
T Consensus 189 ~~~~l~~-L~~l~~~~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 189 YCTDLRV-LHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp CGGGGHH-HHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ccccccc-hhhhhhhhhhhhcccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 5554433 333 3467888888874 444444555677788888876655666666777777776664332
Q ss_pred CCCcCcccccCCCCCCEEEccccccCc---cccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCC
Q 004704 253 FEGQFFSEYMNLTRLRHLYFENNNFSG---KIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 329 (735)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 329 (735)
+.......+..+..+....+..+.... ..+..+....+++.+++.++.+.. ++ .+..... ++.|++.+|.+.+.
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~-~~~~~~~-L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VK-DFSYNFG-WQHLELVNCKFGQF 343 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CG-GGGSCCC-CSEEEEESCEESSC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-cc-ccccchh-hhhhhcccccccCc
Confidence 222333444555566666665554331 223345566788899988888763 32 2333444 89999999888754
Q ss_pred CCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccc--cCcccccCCCCCcEEeCCCCcccccCChhhhC
Q 004704 330 VPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG--LIPGELFRSCKLVTLNLRDNTFSGRIPHQINE 407 (735)
Q Consensus 330 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 407 (735)
.+. .+..|+.+++..|.+.... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.+. ..+..+..
T Consensus 344 ~~~---~l~~L~~l~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~ 418 (635)
T 4g8a_A 344 PTL---KLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLG 418 (635)
T ss_dssp CCC---BCTTCCEEEEESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTT
T ss_pred Ccc---cchhhhhcccccccCCCCc-ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccc
Confidence 443 4567888999888776433 33478899999999998754 45566778889999999999887 45567788
Q ss_pred CCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccC
Q 004704 408 HSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSL 486 (735)
Q Consensus 408 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (735)
+++|+.+++.+|......+ ..+..+++++.+++++|.+.+..|..+..
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~------------------------------- 467 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------- 467 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------------
T ss_pred cccccchhhhhcccccccccccccccccccccccccccccccccccccc-------------------------------
Confidence 8999999999887765543 56788899999999999988766654433
Q ss_pred CCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc-cCCCCccccccccCCeEeC
Q 004704 487 GNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL-TGEIPSDIGQLQAILALNL 565 (735)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~~~~p~~l~~l~~L~~L~L 565 (735)
++.++.|++++|++ .+.+|..|..+++|++|+|
T Consensus 468 ----------------------------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 468 ----------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp ----------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ----------------------------------------------chhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 35678899999975 4457888999999999999
Q ss_pred CCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCC-CC-CccCCcccCCCCCCC
Q 004704 566 SNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKG-QF-ATFDESSYRGNPSLC 643 (735)
Q Consensus 566 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~~~~~~~~gN~~lc 643 (735)
++|++++.+|..|+++++|++|+|++|+|++..|..+..+++|++||+++|+|++.+|..- .+ .++....+.||||.|
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999999999999999999999999998889999999999999999999999888742 23 567778899999999
Q ss_pred CccccC-------CCCCCCCCCccCCCCCcc
Q 004704 644 AWLIQQ-------KYSRTLKPTTTQASGAEE 667 (735)
Q Consensus 644 ~~~~~~-------~~~~~~~~~~~~~~~~~~ 667 (735)
+|.+.+ .-........+.|..|+.
T Consensus 582 ~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~ 612 (635)
T 4g8a_A 582 TCEHQSFLQWIKDQRQLLVEVERMECATPSD 612 (635)
T ss_dssp SGGGHHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred cCCcHHHHHHHHhCCCccCCCCCceeCCchH
Confidence 987532 111222334567777654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-48 Score=440.60 Aligned_cols=460 Identities=16% Similarity=0.176 Sum_probs=284.9
Q ss_pred CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcc------cc------cCChhhhhcCCCCCeeecccccccccccC
Q 004704 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNF------EG------MFPLSSLANHSKLEGLLLSTRNNTLHVKT 87 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l------~~------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 87 (735)
.+++.|+|++|.++|.+|.+|+++++|++|+|++|.+ .+ .+|... +..|+ ++++.+.....++.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 5789999999999999999999999999999999976 23 344322 33444 55555544433332
Q ss_pred CCCCCCCCeeEEEee--------------------CCCCCCCCchhhhCCCCCCEEEccCCcCccc-CchHHHhCCCCCc
Q 004704 88 ENWLPTSQLIVLGLT--------------------KCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-FPTWLLRNNPKLE 146 (735)
Q Consensus 88 ~~~~~~~~L~~L~L~--------------------~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~ 146 (735)
.....+.++..+++. +|++++ +|..++++++|++|+|++|++++. ++.... +
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---~--- 229 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE---N--- 229 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---C---
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc---c---
Confidence 211011111111111 234444 455555555555555555555542 000000 0
Q ss_pred EEECcCCcCcccCcCCcC--CCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCc-CCC-CCCcccCCC------C
Q 004704 147 VLLLKNNSFSGILQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC-FEG-NIPYSAGEM------K 216 (735)
Q Consensus 147 ~L~L~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~ 216 (735)
-+.+...+.+|..+. .+++|++|++++|.+.+.+|..++. +++|++|++++|. +++ .+|..++.+ +
T Consensus 230 ---~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 230 ---ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp ---TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred ---cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 000000000344444 4455555555555544444444443 4455555555554 444 444444443 5
Q ss_pred CCCEEECCCccccCccch-hhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCC-CCEE
Q 004704 217 ELSLLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS-LQVL 294 (735)
Q Consensus 217 ~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L 294 (735)
+|++|++++|.++ .+|. ..+..+++|++|++++|.+.+.+| .+..+++|++|++++|.++ .+|..+..+++ |++|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 5555555555555 4444 123455555555555555555555 5555666666666666665 55555666666 6666
Q ss_pred EeeCCccCCCCCchhhhhc-ccCcEEEcCCCcCCCCCCccCC-------CCCCCCEEEcccCCCCccCCCcc-CCCCccE
Q 004704 295 DISNNMLSGHIPHWMGNFS-SELEILSMSKNHLEGNVPVQLN-------NLERLRILDISENRLSGPIASSL-NLSSVEH 365 (735)
Q Consensus 295 ~l~~n~l~~~~p~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~ 365 (735)
++++|.++ .+|..+.... .+|+.|++++|++++..|..+. .+++|++|++++|+++..++..+ .+++|+.
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 66666666 5665554432 1266667777766666666666 66677777777777775444444 4777777
Q ss_pred EEccCCcccccCcccccCC-------CCCcEEeCCCCcccccCChhhh--CCCCccEEEccCCcCCCCCchhhhcCCCCC
Q 004704 366 LSLQKNALNGLIPGELFRS-------CKLVTLNLRDNTFSGRIPHQIN--EHSNLRFLLLGGNHLQGPIPDQLCQLQKLA 436 (735)
Q Consensus 366 L~l~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 436 (735)
|++++|.++...+..+... ++|+.|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~ 539 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence 7777777773333333322 38999999999999 7888886 89999999999999997 888899999999
Q ss_pred EEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhcccccee
Q 004704 437 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVE 516 (735)
Q Consensus 437 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 516 (735)
.|++++|+.
T Consensus 540 ~L~Ls~N~~----------------------------------------------------------------------- 548 (636)
T 4eco_A 540 GFGIRNQRD----------------------------------------------------------------------- 548 (636)
T ss_dssp EEECCSCBC-----------------------------------------------------------------------
T ss_pred EEECCCCcc-----------------------------------------------------------------------
Confidence 999988752
Q ss_pred EEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccc
Q 004704 517 IEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596 (735)
Q Consensus 517 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 596 (735)
+++|++.+.+|..++.+++|++|+|++|++ +.+|..+. ++|+.|||++|++..
T Consensus 549 ------------------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 549 ------------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp ------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ------------------------cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 356778888899999999999999999999 47787766 799999999998874
Q ss_pred cC
Q 004704 597 QI 598 (735)
Q Consensus 597 ~~ 598 (735)
..
T Consensus 602 ~~ 603 (636)
T 4eco_A 602 ID 603 (636)
T ss_dssp EE
T ss_pred cc
Confidence 33
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-47 Score=423.30 Aligned_cols=402 Identities=19% Similarity=0.225 Sum_probs=247.7
Q ss_pred CchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCcCCCcCChhHH
Q 004704 110 YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNNFRGKLPHNMG 188 (735)
Q Consensus 110 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 188 (735)
.|..|.++++|++|++++|+++ .+|.. .+++|++|++++|.+++. .|..++.+++|++|++++|.+++ ..+
T Consensus 61 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~- 132 (520)
T 2z7x_B 61 DISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSV- 132 (520)
T ss_dssp EGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGG-
T ss_pred ChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhc-
Confidence 3444555555555555555555 44443 455555555555555542 34455555666666666665543 112
Q ss_pred HhcccC--cEEECcCCcC--CCCCCcccCCCC-CCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccC
Q 004704 189 VILQKL--MYMDISKNCF--EGNIPYSAGEMK-ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMN 263 (735)
Q Consensus 189 ~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 263 (735)
..+++| ++|++++|.+ .+..|..+..++ ....+++++|.+.+.++...+..+++|+.+++++|.......
T Consensus 133 ~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----- 207 (520)
T 2z7x_B 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS----- 207 (520)
T ss_dssp GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----
T ss_pred cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----
Confidence 224455 6666666665 445555544443 122345555555544444444445555555555543000000
Q ss_pred CCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhh---hhcccCcEEEcCCCcCCCCCCccC-----C
Q 004704 264 LTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMG---NFSSELEILSMSKNHLEGNVPVQL-----N 335 (735)
Q Consensus 264 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~---~~~~~L~~L~l~~n~l~~~~~~~l-----~ 335 (735)
.+.+.++ .+..+++|+.|++++|.+++..+..+. ..+ +|++|++++|++++.+|..+ .
T Consensus 208 ------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~~ 273 (520)
T 2z7x_B 208 ------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGT 273 (520)
T ss_dssp ------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS-SCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred ------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhC-cccEEEeecccccCccccchhhcccc
Confidence 0222222 233344444444444443322111111 011 25555555555555555554 5
Q ss_pred CCCCCCEEEcccCCCCccCC-Ccc-C---CCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCC
Q 004704 336 NLERLRILDISENRLSGPIA-SSL-N---LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSN 410 (735)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~-~~~-~---l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 410 (735)
.+++|+.+++++|.+ .+| ... . ..+|+.|++++|.+.... .+..+++|++|++++|++++..|..++.+++
T Consensus 274 ~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 274 SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 666677777777766 222 111 2 256777777777765432 1256778888888888888778888888888
Q ss_pred ccEEEccCCcCCC--CCchhhhcCCCCCEEECcCCcCCCCCCch-hhcccccccccCCccCCCCCCCcccchhhhcccCC
Q 004704 411 LRFLLLGGNHLQG--PIPDQLCQLQKLAMMDLSRNKFSGSIPPC-FANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLG 487 (735)
Q Consensus 411 L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (735)
|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +.
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~--------------------------------- 396 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS--------------------------------- 396 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC---------------------------------
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc---------------------------------
Confidence 8888888888886 45677888889999999999888655542 21
Q ss_pred CCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCC
Q 004704 488 NNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN 567 (735)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~ 567 (735)
.+++|+.|++++|++++.+|..+. ++|+.|++++
T Consensus 397 --------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~ 430 (520)
T 2z7x_B 397 --------------------------------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430 (520)
T ss_dssp --------------------------------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCS
T ss_pred --------------------------------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCC
Confidence 235788899999999887777665 7899999999
Q ss_pred CcCcccCcccccCcCCCCEEeCCCCcccccCCcc-ccCCCCCCeEEcccCcCcccCC
Q 004704 568 NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTP 623 (735)
Q Consensus 568 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p 623 (735)
|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|++++|+++|.++
T Consensus 431 N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 431 NKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred Cccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999 78888889999999999999999 46655 8999999999999999998776
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.7e-47 Score=435.21 Aligned_cols=484 Identities=14% Similarity=0.168 Sum_probs=300.9
Q ss_pred CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeC-CCCcccccCChhhhhcCCCCCe-----eeccc----------cccc-
Q 004704 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDL-SHNNFEGMFPLSSLANHSKLEG-----LLLST----------RNNT- 82 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~-----L~L~~----------~~~~- 82 (735)
.+++.|+|++|.++|.+|++|+++++|++|+| ++|.++|..|.........+.. +.... .+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8998887755221110000000 00000 0000
Q ss_pred ---------ccccCCCCCCCCCeeEEEeeC--CCCCCCCchhhhCCCCCCEEEccCCcCccc-CchHHHhCCCCCcEEEC
Q 004704 83 ---------LHVKTENWLPTSQLIVLGLTK--CNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-FPTWLLRNNPKLEVLLL 150 (735)
Q Consensus 83 ---------~~~~~~~~~~~~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L 150 (735)
.............++.+.+.. |++++ +|..+.++++|++|+|++|++++. +|.... ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~---------~~ 472 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE---------DA 472 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---------CT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc---------cc
Confidence 000000001112233333322 55555 666677777777777777777651 110000 00
Q ss_pred cCCcCcccCcCCcC--CCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCc-CCC-CCCcccCC-------CCCCC
Q 004704 151 KNNSFSGILQLPKA--KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNC-FEG-NIPYSAGE-------MKELS 219 (735)
Q Consensus 151 ~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~-------l~~L~ 219 (735)
+.|.+++.+|..++ .+++|++|++++|.+.+.+|..+.. +++|++|++++|. +++ .+|..++. +++|+
T Consensus 473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~ 551 (876)
T 4ecn_A 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551 (876)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence 00111112344443 4555555555555544445544443 4455555555554 444 34433332 23666
Q ss_pred EEECCCccccCccch-hhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCC-CCEEEee
Q 004704 220 LLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTS-LQVLDIS 297 (735)
Q Consensus 220 ~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L~l~ 297 (735)
+|++++|.++ .+|. ..+..+++|++|++++|.++ .+| .|..+++|+.|++++|.+. .+|..+..+++ |++|+++
T Consensus 552 ~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 552 IFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp EEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred EEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 6666666665 5554 22345666666666666665 444 5666666666666666666 55555666666 6666666
Q ss_pred CCccCCCCCchhhhhc-ccCcEEEcCCCcCCCCCCcc---CC--CCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccC
Q 004704 298 NNMLSGHIPHWMGNFS-SELEILSMSKNHLEGNVPVQ---LN--NLERLRILDISENRLSGPIASSL-NLSSVEHLSLQK 370 (735)
Q Consensus 298 ~n~l~~~~p~~~~~~~-~~L~~L~l~~n~l~~~~~~~---l~--~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~ 370 (735)
+|.++ .+|..+.... .+|+.|++++|++.+.+|.. +. .+++|+.|++++|+++..+...+ .+++|+.|++++
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 66666 5555544432 12666666666666544422 11 23467777777777774444444 567777777777
Q ss_pred CcccccCcccccC--------CCCCcEEeCCCCcccccCChhhh--CCCCccEEEccCCcCCCCCchhhhcCCCCCEEEC
Q 004704 371 NALNGLIPGELFR--------SCKLVTLNLRDNTFSGRIPHQIN--EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL 440 (735)
Q Consensus 371 n~l~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 440 (735)
|.+. .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence 7777 34443332 338999999999998 7888887 89999999999999997 7888999999999999
Q ss_pred cCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEE
Q 004704 441 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 520 (735)
Q Consensus 441 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 520 (735)
++|+
T Consensus 784 s~N~---------------------------------------------------------------------------- 787 (876)
T 4ecn_A 784 RHQR---------------------------------------------------------------------------- 787 (876)
T ss_dssp CCCB----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 8875
Q ss_pred eccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCc
Q 004704 521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP 600 (735)
Q Consensus 521 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 600 (735)
++++|++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+.
T Consensus 788 -------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 788 -------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp -------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred -------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 2356778888899999999999999999999 57888766 6999999999999877777
Q ss_pred cccCCCCCCeEEcccCcCcc
Q 004704 601 QLTALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 601 ~l~~l~~L~~L~ls~N~l~~ 620 (735)
.+.....+..+.+++|++..
T Consensus 846 ~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 846 SVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp GGHHHHHTTCCEEECCTTSE
T ss_pred HccccccchheeecCCCccc
Confidence 77777777888888887753
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-46 Score=429.11 Aligned_cols=462 Identities=18% Similarity=0.217 Sum_probs=317.7
Q ss_pred CCeeEEEeeCCCCCCCCchhhhCCCCCCEEEc-cCCcCcccCchHHHhCCCCCc-----EEE----------CcCCcCcc
Q 004704 94 SQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDL-SHNKLVGNFPTWLLRNNPKLE-----VLL----------LKNNSFSG 157 (735)
Q Consensus 94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~-----~L~----------L~~n~l~~ 157 (735)
..++.|+|++|++.|.+|+.++++++|++|+| ++|.++|..|.........+. .+. .....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999999999999999999999999 888877663321000000000 000 00000000
Q ss_pred c-----------CcCCcCCCCCcCEEEccC--CcCCCcCChhHHHhcccCcEEECcCCcCCC-----------------C
Q 004704 158 I-----------LQLPKAKHDFLHHLDISC--NNFRGKLPHNMGVILQKLMYMDISKNCFEG-----------------N 207 (735)
Q Consensus 158 ~-----------~~~~~~~~~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~ 207 (735)
. .+........++.+.+.. |.+++ +|..++. +++|++|++++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 000011112233333332 55664 6666554 6677777777777665 3
Q ss_pred CCcccC--CCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC-CCC-cCcccccCC-------CCCCEEEccccc
Q 004704 208 IPYSAG--EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEG-QFFSEYMNL-------TRLRHLYFENNN 276 (735)
Q Consensus 208 ~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~ 276 (735)
+|..++ ++++|++|++++|.+.+.+|..+ .++++|++|++++|. +++ .+|..+..+ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 777766 77777777777777777777544 467777777777776 666 566544443 478888888888
Q ss_pred cCccccc--cccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCC-CCEEEcccCCCCcc
Q 004704 277 FSGKIKD--GLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER-LRILDISENRLSGP 353 (735)
Q Consensus 277 l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~ 353 (735)
++ .+|. .+..+++|++|++++|.++ .+| .++.++. |+.|++++|+++ .+|..+..+++ |++|++++|+++ .
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 77 6776 7777888888888888877 777 6666666 888888888877 67777777777 888888888877 3
Q ss_pred CCCcc-CC--CCccEEEccCCcccccCcccc---c--CCCCCcEEeCCCCcccccCChhh-hCCCCccEEEccCCcCCCC
Q 004704 354 IASSL-NL--SSVEHLSLQKNALNGLIPGEL---F--RSCKLVTLNLRDNTFSGRIPHQI-NEHSNLRFLLLGGNHLQGP 424 (735)
Q Consensus 354 ~~~~~-~l--~~L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~ 424 (735)
+|..+ .+ ++|+.|++++|.+.+.+|... . .+++|+.|++++|.++ .+|..+ ..+++|+.|+|++|++. .
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-c
Confidence 44443 33 348888888888877655322 2 3457889999999888 555554 47888999999999888 5
Q ss_pred Cchhhhc--------CCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704 425 IPDQLCQ--------LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 496 (735)
Q Consensus 425 ~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (735)
+|..+.. +++|+.|+|++|+++ .+|..+..
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~----------------------------------------- 749 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA----------------------------------------- 749 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-----------------------------------------
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-----------------------------------------
Confidence 5554433 238999999999988 56655430
Q ss_pred chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCC------CcC
Q 004704 497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSN------NSL 570 (735)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l 570 (735)
..+++|+.|+|++|++++ +|..++.+++|+.|+|++ |++
T Consensus 750 ----------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 750 ----------------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp ----------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred ----------------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 123678889999999996 788899999999999976 889
Q ss_pred cccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCC-CCccCCcccCCCCCCC--Ccc
Q 004704 571 SGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQ-FATFDESSYRGNPSLC--AWL 646 (735)
Q Consensus 571 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~~~~~~~~~~gN~~lc--~~~ 646 (735)
.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..-. ........+.+|+..+ +|+
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 999999999999999999999999 68998876 6999999999999766543210 0112233455666554 554
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.7e-46 Score=413.21 Aligned_cols=453 Identities=19% Similarity=0.215 Sum_probs=335.3
Q ss_pred EEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCC
Q 004704 98 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 177 (735)
Q Consensus 98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 177 (735)
++++++|+++ .+|..+. ++|++|++++|.++ .++...+.++++|++|++++|++++..|..+..+++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 3444444444 2333332 45666666666665 333233345666666666666666665566666666666666666
Q ss_pred cCCCcCChhHHHhcccCcEEECcCCcCCC-CCCcccCCCCCCCEEECCCccccCccchhhhhCCCCC--CEEEccCCCC-
Q 004704 178 NFRGKLPHNMGVILQKLMYMDISKNCFEG-NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL--ELLDLSNNNF- 253 (735)
Q Consensus 178 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l- 253 (735)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccc
Confidence 666 55555 36677777777777765 466777778888888888887764 223456667 8888888888
Q ss_pred -CCcCcccccCCC-CCCEEEccccccCccccc-cccCCCCCCEEEeeCCc-------cCCCCCchhhhhcccCcEEEcCC
Q 004704 254 -EGQFFSEYMNLT-RLRHLYFENNNFSGKIKD-GLLSSTSLQVLDISNNM-------LSGHIPHWMGNFSSELEILSMSK 323 (735)
Q Consensus 254 -~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~-------l~~~~p~~~~~~~~~L~~L~l~~ 323 (735)
.+..|..+..+. +...+++++|.+.+.+++ .+..+++|+.+++++|. +.+.+| .+..++. |+.|++++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~-L~~L~l~~ 229 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK-LSNLTLNN 229 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT-CCEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc-hhhccccc
Confidence 666666666655 334567778877655443 56778999999999987 555555 6777776 99999999
Q ss_pred CcCCCCCCccCC---CCCCCCEEEcccCCCCccCCCc------cCCCCccEEEccCCcccccCc-ccccCC---CCCcEE
Q 004704 324 NHLEGNVPVQLN---NLERLRILDISENRLSGPIASS------LNLSSVEHLSLQKNALNGLIP-GELFRS---CKLVTL 390 (735)
Q Consensus 324 n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~------~~l~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L 390 (735)
|.+++..+..+. ..++|++|++++|++++.+|.. ..+++|+.+++++|.+ .+| ..+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 988753222111 2468999999999999766654 4688999999999999 344 444444 689999
Q ss_pred eCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC--CCCchhhcccccccccCCccC
Q 004704 391 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG--SIPPCFANVLSWRVGSDDVLN 468 (735)
Q Consensus 391 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~l~~~~~~~~~ 468 (735)
++++|.+.... ....+++|++|++++|++++.+|..+..+++|+.|++++|++++ .+|..+..
T Consensus 308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~------------- 372 (520)
T 2z7x_B 308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ------------- 372 (520)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-------------
T ss_pred EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-------------
Confidence 99999987432 12678999999999999999899999999999999999999985 23333332
Q ss_pred CCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccC
Q 004704 469 GSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG 548 (735)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 548 (735)
+++|+.||+++|++++
T Consensus 373 ----------------------------------------------------------------l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 373 ----------------------------------------------------------------MKSLQQLDISQNSVSY 388 (520)
T ss_dssp ----------------------------------------------------------------CTTCCEEECCSSCCBC
T ss_pred ----------------------------------------------------------------CCCCCEEECCCCcCCc
Confidence 3678999999999998
Q ss_pred CCCcc-ccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC-CC
Q 004704 549 EIPSD-IGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KG 626 (735)
Q Consensus 549 ~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~ 626 (735)
.+|.. +..+++|++|++++|++++.+|..+. ++|++|||++|+++ .+|..+..+++|++|++++|++++..+. ..
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence 67764 88999999999999999988888775 79999999999999 8999888999999999999999964444 45
Q ss_pred CCCccCCcccCCCCCCCCcccc
Q 004704 627 QFATFDESSYRGNPSLCAWLIQ 648 (735)
Q Consensus 627 ~~~~~~~~~~~gN~~lc~~~~~ 648 (735)
.+..+....+.|||+.|+|+..
T Consensus 466 ~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp TCTTCCEEECCSSCBCCCHHHH
T ss_pred cCCcccEEECcCCCCcccCCch
Confidence 5667778889999999988653
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.9e-44 Score=411.42 Aligned_cols=524 Identities=20% Similarity=0.192 Sum_probs=410.0
Q ss_pred CCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccc
Q 004704 6 NFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHV 85 (735)
Q Consensus 6 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 85 (735)
.+++ .+|..+. +++++|||++|+|++..|.+|.++++|++|||++|+|++ ++..+|.++++|++|+|++|.+. .+
T Consensus 41 ~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~-~l 115 (635)
T 4g8a_A 41 LNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ-SL 115 (635)
T ss_dssp SCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCC-EE
T ss_pred CCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCC-CC
Confidence 3454 4565543 479999999999997777899999999999999999984 55478999999999999998764 45
Q ss_pred cCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCccc-CchHHHhCCCCCcEEECcCCcCcccCcCCcC
Q 004704 86 KTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGN-FPTWLLRNNPKLEVLLLKNNSFSGILQLPKA 164 (735)
Q Consensus 86 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 164 (735)
+...|..+++|++|+|++|++++..+..|+++++|++|++++|.+++. +|.. +..+++|++|++++|++++..+..+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccccccccc
Confidence 566688899999999999999988788899999999999999998743 4544 45899999999999999988877776
Q ss_pred CCCC----cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCC-CCcccCCCCCCCEEECCCccccC-----ccch
Q 004704 165 KHDF----LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGN-IPYSAGEMKELSLLDLSRNYFSG-----GLSQ 234 (735)
Q Consensus 165 ~~~~----L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~-----~~~~ 234 (735)
.+.+ ...++++.|.++ .++...+. ...++.+++.+|..... .+..+..+..++...+..+.... ....
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred chhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 5544 347889999988 55555555 34677888888765432 23445667777766654332211 1222
Q ss_pred hhhhCCCCCCEEEccCCCCCC---cCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhh
Q 004704 235 SVVTGCFSLELLDLSNNNFEG---QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311 (735)
Q Consensus 235 ~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~ 311 (735)
..+..+..+...++..+.... .....+..+.+++.+++.++.+.... .+.....++.|++.+|.+.+..+. .
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~ 347 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---K 347 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---B
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---c
Confidence 223445566666665544332 23345566788999999999887432 356678999999999998744332 2
Q ss_pred hcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCC--Ccc-CCCCccEEEccCCcccccCcccccCCCCCc
Q 004704 312 FSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA--SSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLV 388 (735)
Q Consensus 312 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 388 (735)
+.. |+.+++..|.+... .....+++|+.+++++|.+..... ... .+.+|+.+++..+..... +..+..+++|+
T Consensus 348 l~~-L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~ 423 (635)
T 4g8a_A 348 LKS-LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLE 423 (635)
T ss_dssp CTT-CCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCC
T ss_pred chh-hhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-ccccccccccc
Confidence 334 89999999987643 334578999999999999865332 222 788999999999988754 55678899999
Q ss_pred EEeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC-CCCchhhcccccccccCCc
Q 004704 389 TLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG-SIPPCFANVLSWRVGSDDV 466 (735)
Q Consensus 389 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~ 466 (735)
.+++..+......+ ..+..+++++.++++.|.+.+..+..+..++.|+.|++++|++.+ ..|..+..
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------- 492 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------- 492 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-----------
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-----------
Confidence 99999988775544 567889999999999999999899999999999999999998543 34443332
Q ss_pred cCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc
Q 004704 467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 546 (735)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 546 (735)
+++|+.|||++|++
T Consensus 493 ------------------------------------------------------------------l~~L~~L~Ls~N~L 506 (635)
T 4g8a_A 493 ------------------------------------------------------------------LRNLTFLDLSQCQL 506 (635)
T ss_dssp ------------------------------------------------------------------CTTCCEEECTTSCC
T ss_pred ------------------------------------------------------------------ccccCEEECCCCcc
Confidence 46788999999999
Q ss_pred cCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCC-CCCCeEEcccCcCcccCC
Q 004704 547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTAL-NFLSIFNVSYNNLSGRTP 623 (735)
Q Consensus 547 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p 623 (735)
++..|..|+++++|++|+|++|+|++.+|..|+++++|++|||++|++++..|+.+..+ ++|++|++++|+++|.+.
T Consensus 507 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999998 689999999999998775
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-43 Score=398.00 Aligned_cols=461 Identities=20% Similarity=0.226 Sum_probs=294.6
Q ss_pred CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEE
Q 004704 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVL 99 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 99 (735)
...+++|+++|++++ +|..+. ++|++|++++|.+++..+ ..| ..+++|++|
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~-~~~-------------------------~~l~~L~~L 81 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRM-PDI-------------------------SFLSELRVL 81 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCG-GGT-------------------------TTCTTCCEE
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccCh-hhh-------------------------ccCCCccEE
Confidence 334566666666663 454332 566666666666653222 333 344455555
Q ss_pred EeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCccc-CcCCcCCCCCcCEEEccCCc
Q 004704 100 GLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGI-LQLPKAKHDFLHHLDISCNN 178 (735)
Q Consensus 100 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~ 178 (735)
+|++|++++..|.+|.++++|++||+++|+++ .+|.. .+++|++|++++|++++. .|..+..+++|++|++++|.
T Consensus 82 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 82 RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred ECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 55555566556666777777777777777776 56654 567777777777777664 24566677777777777776
Q ss_pred CCCcCChhHHHhcccC--cEEECcCCcC--CCCCCcccCCCC--CCCEEECCCccccCccchhhhhCCCCCCEEEccCCC
Q 004704 179 FRGKLPHNMGVILQKL--MYMDISKNCF--EGNIPYSAGEMK--ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 252 (735)
Q Consensus 179 l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 252 (735)
+++. .+. .+++| ++|++++|.+ ++..|..+..++ .+ .++++.|.+.+.++...+..+++|+.+++++|.
T Consensus 158 l~~~---~~~-~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 158 FRQL---DLL-PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp CCTT---TTG-GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred cccC---chh-hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccc
Confidence 6532 111 13444 7777777766 555555554443 22 345555555544444444445555555555543
Q ss_pred CCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCC----CCchhhhhcccCcEEEcCCCcCCC
Q 004704 253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGH----IPHWMGNFSSELEILSMSKNHLEG 328 (735)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~~L~~L~l~~n~l~~ 328 (735)
.... .+. .....+..++.|+.+++.++.+.+. ++..+. .. +|++|++++|.+++
T Consensus 233 ~~~~-------------------~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~-~L~~L~l~~n~l~~ 290 (562)
T 3a79_B 233 ENCQ-------------------RLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PR-PVEYLNIYNLTITE 290 (562)
T ss_dssp TTHH-------------------HHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT-TS-SEEEEEEEEEEECS
T ss_pred cccc-------------------hHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh-cc-cccEEEEeccEeec
Confidence 1100 011 1112234444555555544444321 111111 11 26666666666665
Q ss_pred CCCccC-----CCCCCCCEEEcccCCCCccCC-Ccc----CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704 329 NVPVQL-----NNLERLRILDISENRLSGPIA-SSL----NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 398 (735)
Q Consensus 329 ~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~~----~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 398 (735)
.+|..+ ..++.|+.+++..+.+ .++ ... ...+|+.|++++|.+.... ....+++|++|++++|+++
T Consensus 291 ~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 291 RIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp CCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCC
T ss_pred cccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccc
Confidence 555554 5555666666666655 222 111 2356888888888875432 1257788999999999999
Q ss_pred ccCChhhhCCCCccEEEccCCcCCCC--CchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcc
Q 004704 399 GRIPHQINEHSNLRFLLLGGNHLQGP--IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPE 476 (735)
Q Consensus 399 ~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 476 (735)
+..|..+..+++|++|++++|++++. +|..+..+++|+.|++++|++++.+|....
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---------------------- 424 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC---------------------- 424 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC----------------------
T ss_pred cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh----------------------
Confidence 88888899999999999999999863 346788999999999999999875654311
Q ss_pred cchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccc
Q 004704 477 LDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQ 556 (735)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 556 (735)
..+++|+.|++++|++++.+|..+.
T Consensus 425 ------------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~- 449 (562)
T 3a79_B 425 ------------------------------------------------------AWAESILVLNLSSNMLTGSVFRCLP- 449 (562)
T ss_dssp ------------------------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC-
T ss_pred ------------------------------------------------------cCcccCCEEECCCCCCCcchhhhhc-
Confidence 1236788899999999887777665
Q ss_pred cccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc-ccCCCCCCeEEcccCcCcccCCC
Q 004704 557 LQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ-LTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 557 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
++|++|+|++|+++ .+|..+.++++|++|||++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus 450 -~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 450 -PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp -TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred -CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 78999999999999 67777779999999999999999 46655 89999999999999999987764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-42 Score=387.89 Aligned_cols=455 Identities=21% Similarity=0.208 Sum_probs=301.4
Q ss_pred CcCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccc
Q 004704 1 MNLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRN 80 (735)
Q Consensus 1 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~ 80 (735)
+|+++|++++ +|..+. ++|++|+|++|.+++..|.+|+++++|++|++++|++++..| ..|.++++|++|++++|.
T Consensus 36 l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 36 VDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSC
T ss_pred EEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCc
Confidence 5789999996 676664 899999999999998888999999999999999999986655 678899999999999887
Q ss_pred ccccccCCCCCCCCCeeEEEeeCCCCCC-CCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCC--cEEECcCCcC--
Q 004704 81 NTLHVKTENWLPTSQLIVLGLTKCNLNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKL--EVLLLKNNSF-- 155 (735)
Q Consensus 81 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L--~~L~L~~n~l-- 155 (735)
+. .++.. .+++|++|++++|++++ .+|..+.++++|++|++++|++++. . +..+++| ++|++++|.+
T Consensus 112 l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 112 LQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESSCCC
T ss_pred CC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeecccccc
Confidence 65 44443 67778888888887776 3457777777788888887777632 1 2234444 7777777766
Q ss_pred cccCcCCcCCCC--CcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccc
Q 004704 156 SGILQLPKAKHD--FLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLS 233 (735)
Q Consensus 156 ~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 233 (735)
++..+..+..+. .+ .+++++|.+.+.++...+..+++|+.+++++|...- ..+.+.+
T Consensus 184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-------------------~~l~~~~- 242 (562)
T 3a79_B 184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC-------------------QRLMTFL- 242 (562)
T ss_dssp CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH-------------------HHHHHHH-
T ss_pred cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccccc-------------------chHHHHH-
Confidence 555555444432 12 345555555544444444334455555555442100 0011111
Q ss_pred hhhhhCCCCCCEEEccCCCCCCcC----cccccCCCCCCEEEccccccCccccccc-----cCCCCCCEEEeeCCccCCC
Q 004704 234 QSVVTGCFSLELLDLSNNNFEGQF----FSEYMNLTRLRHLYFENNNFSGKIKDGL-----LSSTSLQVLDISNNMLSGH 304 (735)
Q Consensus 234 ~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~ 304 (735)
..+..++.|+.++++++.+.+.. +.. ...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .
T Consensus 243 -~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~ 318 (562)
T 3a79_B 243 -SELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L 318 (562)
T ss_dssp -HHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred -HHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence 11234455555555544443211 111 122356666666666665555554 4444555555555554 3
Q ss_pred CC-chhhhh---cccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCccc
Q 004704 305 IP-HWMGNF---SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGE 380 (735)
Q Consensus 305 ~p-~~~~~~---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 380 (735)
+| ..+... .. |++|++++|.+. .... ...+++|++|++++|.+++..|..
T Consensus 319 ~p~~~~~~~~~~~~-L~~L~l~~n~~~------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 319 FSKEALYSVFAEMN-IKMLSISDTPFI------------------------HMVC-PPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp SCHHHHHHHHHTCC-CSEEEEESSCCC------------------------CCCC-CSSCCCCCEEECCSSCCCTTTTTT
T ss_pred cChhhhhhhhccCc-ceEEEccCCCcc------------------------cccC-ccCCCCceEEECCCCccccchhhh
Confidence 34 222222 22 555555555443 2110 024556666666666666666777
Q ss_pred ccCCCCCcEEeCCCCcccc--cCChhhhCCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhccc
Q 004704 381 LFRSCKLVTLNLRDNTFSG--RIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVL 457 (735)
Q Consensus 381 ~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 457 (735)
+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+| ..+..+++|+.|++++|++++.+|..+.
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--- 449 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--- 449 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---
Confidence 7777888888888888875 234667888889999999999887444 4578889999999999998765443221
Q ss_pred ccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccc
Q 004704 458 SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 537 (735)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 537 (735)
++|+
T Consensus 450 ----------------------------------------------------------------------------~~L~ 453 (562)
T 3a79_B 450 ----------------------------------------------------------------------------PKVK 453 (562)
T ss_dssp ----------------------------------------------------------------------------TTCS
T ss_pred ----------------------------------------------------------------------------CcCC
Confidence 3678
Q ss_pred eEECCCCcccCCCCccccccccCCeEeCCCCcCcccCccc-ccCcCCCCEEeCCCCcccccCC
Q 004704 538 GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPES-FSNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 538 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~LdLs~N~l~~~~p 599 (735)
.|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. |..+++|+.|++++|.+.+..|
T Consensus 454 ~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 8999999999 788888899999999999999995 5554 9999999999999999987654
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.7e-41 Score=369.02 Aligned_cols=375 Identities=19% Similarity=0.219 Sum_probs=294.1
Q ss_pred CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704 170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249 (735)
Q Consensus 170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 249 (735)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35666666666 6665 2 35788888888888776677788888888888888887766766667778888888888
Q ss_pred CCCCCCcCcccccCCCCCCEEEccccccCcccccc--ccCCCCCCEEEeeCCccCCCCCch-hhhhcccCcEEEcCCCcC
Q 004704 250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDG--LLSSTSLQVLDISNNMLSGHIPHW-MGNFSSELEILSMSKNHL 326 (735)
Q Consensus 250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l 326 (735)
+|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..++. |++|++++|++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCcc
Confidence 88888777778888888888888888887644444 777888888888888888666665 566655 88888888888
Q ss_pred CCCCCccCCCC--CCCCEEEcccCCCCccCCCc---------cCCCCccEEEccCCcccccCcccccCC---CCCcEEeC
Q 004704 327 EGNVPVQLNNL--ERLRILDISENRLSGPIASS---------LNLSSVEHLSLQKNALNGLIPGELFRS---CKLVTLNL 392 (735)
Q Consensus 327 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l 392 (735)
++..+..+..+ .+|+.|++++|.+.+..+.. +.+++|+.|++++|.+.+..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 87777776655 67888888888877654432 245778888888888887777666543 78888888
Q ss_pred CCCccccc----------CChhhhC--CCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccc
Q 004704 393 RDNTFSGR----------IPHQINE--HSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460 (735)
Q Consensus 393 ~~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 460 (735)
++|.+.+. .+..+.. .++|++|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---- 322 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL---- 322 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC----
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc----
Confidence 88765432 1222222 3689999999999998888899999999999999999987766665442
Q ss_pred cccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEE
Q 004704 461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD 540 (735)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 540 (735)
++|+.|+
T Consensus 323 -------------------------------------------------------------------------~~L~~L~ 329 (455)
T 3v47_A 323 -------------------------------------------------------------------------THLLKLN 329 (455)
T ss_dssp -------------------------------------------------------------------------TTCCEEE
T ss_pred -------------------------------------------------------------------------ccCCEEE
Confidence 5788899
Q ss_pred CCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704 541 LSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 541 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 620 (735)
|++|++++..|..++.+++|++|+|++|++++..|..|+++++|++|||++|++++..+..+..+++|++|++++|+++|
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 99999988888889999999999999999998889999999999999999999998777788999999999999999999
Q ss_pred cCCCCCC
Q 004704 621 RTPDKGQ 627 (735)
Q Consensus 621 ~~p~~~~ 627 (735)
.+|....
T Consensus 410 ~~~~~~~ 416 (455)
T 3v47_A 410 SCPRIDY 416 (455)
T ss_dssp CTTTTHH
T ss_pred CCCcchH
Confidence 9886443
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-40 Score=361.67 Aligned_cols=421 Identities=24% Similarity=0.302 Sum_probs=200.5
Q ss_pred CCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCee
Q 004704 18 NLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLI 97 (735)
Q Consensus 18 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 97 (735)
+.++|++|++++|.+ +.+|++++++++|++|++++|.++|.+| ..++++++|+.+++..|.. .+++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------~~l~ 74 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------RQAH 74 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------HTCS
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------cCCC
Confidence 468999999999999 6899999999999999999999998888 4677777777777665432 3556
Q ss_pred EEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCC
Q 004704 98 VLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCN 177 (735)
Q Consensus 98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 177 (735)
+|++++|++++ +|.. .++|++|++++|.+++ +|. ..++|++|++++|+++++
T Consensus 75 ~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l------------------- 126 (454)
T 1jl5_A 75 ELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL------------------- 126 (454)
T ss_dssp EEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC-------------------
T ss_pred EEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc-------------------
Confidence 66666666654 2221 2456666666666653 543 234555555555555443
Q ss_pred cCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcC
Q 004704 178 NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 257 (735)
Q Consensus 178 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 257 (735)
|.. .++|++|++++|.+++ +| .++++++|++|++++|++++ +|.. ..+|++|++++|.+++ +
T Consensus 127 ------~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l 188 (454)
T 1jl5_A 127 ------SDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-L 188 (454)
T ss_dssp ------CSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-C
T ss_pred ------cCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-C
Confidence 211 1344555555554443 34 34555555555555555442 3321 2355555555555554 2
Q ss_pred cccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCC
Q 004704 258 FSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 337 (735)
Q Consensus 258 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 337 (735)
| .+.++++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. ++.++. |++|++++|++++ +|.. .
T Consensus 189 ~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~-L~~L~l~~N~l~~-l~~~---~ 256 (454)
T 1jl5_A 189 P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPF-LTTIYADNNLLKT-LPDL---P 256 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTT-CCEEECCSSCCSS-CCSC---C
T ss_pred c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCC-CCEEECCCCcCCc-cccc---c
Confidence 2 35555555555555555553 2322 135566666666555 4553 444444 6666666665553 2321 2
Q ss_pred CCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCC-CCccEEEc
Q 004704 338 ERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH-SNLRFLLL 416 (735)
Q Consensus 338 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L 416 (735)
++|++|++++|++++... ..++|+.|++++|.+++. |. ..++|+.|++++|++++ ++ .+ ++|++|++
T Consensus 257 ~~L~~L~l~~N~l~~l~~---~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~L 324 (454)
T 1jl5_A 257 PSLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNV 324 (454)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEEC
T ss_pred cccCEEECCCCcccccCc---ccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEEC
Confidence 456666666666654222 135666666666666652 11 11467777777777764 22 22 47888888
Q ss_pred cCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704 417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 496 (735)
Q Consensus 417 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (735)
++|++++ +|.. +++|+.|++++|+++ .+|..
T Consensus 325 s~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~~-------------------------------------------- 355 (454)
T 1jl5_A 325 SNNKLIE-LPAL---PPRLERLIASFNHLA-EVPEL-------------------------------------------- 355 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCC--------------------------------------------
T ss_pred CCCcccc-cccc---CCcCCEEECCCCccc-cccch--------------------------------------------
Confidence 8888875 5543 477888888888877 34330
Q ss_pred chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccC--CCCccccccccCCeEeCCCCcCcccC
Q 004704 497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNNSLSGSI 574 (735)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~ 574 (735)
+++|+.|++++|++++ .+|..++.+ +.|.+.+.+
T Consensus 356 ------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i 391 (454)
T 1jl5_A 356 ------------------------------------PQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEV 391 (454)
T ss_dssp ------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-----
T ss_pred ------------------------------------hhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccc
Confidence 1457778888888887 667665543 346777777
Q ss_pred cccccCcCCCCEEeCCCCcccc--cCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 575 PESFSNLKMIESLDISYNKLTG--QIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 575 p~~~~~l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
|.. +++|++||+++|++++ .+|.+ ++.|.+.+|.+.+.+|.
T Consensus 392 ~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 392 PEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ----------------------------------------------------
T ss_pred ccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 763 5789999999999987 66654 55667888888887764
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-40 Score=360.99 Aligned_cols=383 Identities=17% Similarity=0.186 Sum_probs=263.1
Q ss_pred EEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcC
Q 004704 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK 201 (735)
Q Consensus 122 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 201 (735)
.++.+++.++ .+|. -.++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555555 5554 1255666666666666666666666666677777666665555554444466777777777
Q ss_pred CcCCCCCCcccCCCCCCCEEECCCccccCccch-hhhhCCCCCCEEEccCCCCCCcCccc-ccCCCCCCEEEccccccCc
Q 004704 202 NCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQ-SVVTGCFSLELLDLSNNNFEGQFFSE-YMNLTRLRHLYFENNNFSG 279 (735)
Q Consensus 202 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~ 279 (735)
|.+++..|..++++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 776666666677777777777777766643332 22455666777777777766655544 5666677777777776666
Q ss_pred cccccccCC--CCCCEEEeeCCccCCCCCchh--------hhhcccCcEEEcCCCcCCCCCCccCCC---CCCCCEEEcc
Q 004704 280 KIKDGLLSS--TSLQVLDISNNMLSGHIPHWM--------GNFSSELEILSMSKNHLEGNVPVQLNN---LERLRILDIS 346 (735)
Q Consensus 280 ~~~~~l~~~--~~L~~L~l~~n~l~~~~p~~~--------~~~~~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~L~ 346 (735)
..+..+..+ ++|+.|++++|.+.+..+..+ ...+. |++|++++|++++..|..+.. .++|+.|+++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE-EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccce-eeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 555555443 566666666666664332221 12233 666666666666555544332 2566666666
Q ss_pred cCCCCccCCCccCCCCccEEEccCCcccccCccccc--CCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCC
Q 004704 347 ENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF--RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP 424 (735)
Q Consensus 347 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 424 (735)
+|...+..... +.+.+..+..+. ..++|+.|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 248 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 248 NSYNMGSSFGH-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp TCTTTSCCTTC-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccccccch-------------hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 66554322111 111111122222 236899999999999988888999999999999999999988
Q ss_pred CchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhh
Q 004704 425 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 504 (735)
Q Consensus 425 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (735)
.|..+..+++|+.|++++|++++..|..+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 345 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN------------------------------------------------- 345 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTT-------------------------------------------------
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcC-------------------------------------------------
Confidence 8888999999999999999998766665544
Q ss_pred hhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCC
Q 004704 505 LEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMI 584 (735)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 584 (735)
+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..+..|+.+++|
T Consensus 346 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 346 ----------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp ----------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 3578889999999998889999999999999999999998777888999999
Q ss_pred CEEeCCCCcccccCCc
Q 004704 585 ESLDISYNKLTGQIPP 600 (735)
Q Consensus 585 ~~LdLs~N~l~~~~p~ 600 (735)
++|++++|++++..|.
T Consensus 398 ~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 398 QKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEccCCCcccCCCc
Confidence 9999999999988773
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.7e-40 Score=354.40 Aligned_cols=403 Identities=23% Similarity=0.273 Sum_probs=226.5
Q ss_pred CCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCC-------------CcEEECcCCcCcccC
Q 004704 93 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPK-------------LEVLLLKNNSFSGIL 159 (735)
Q Consensus 93 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~-------------L~~L~L~~n~l~~~~ 159 (735)
.+.|++|++++|++ +.+|..++++++|++|++++|.++|.+|..+. ++.+ +++|++++|.++++.
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 45777777777777 67787888888888888888888777776553 4443 588888888887753
Q ss_pred cCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhC
Q 004704 160 QLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTG 239 (735)
Q Consensus 160 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 239 (735)
. ..++|++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++++ +| . +..
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~-~~~ 151 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-E-LQN 151 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-C-CTT
T ss_pred C----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-c-cCC
Confidence 2 23678888888888874 6643 3678888888888774 3321 1678888888888874 66 2 567
Q ss_pred CCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEE
Q 004704 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 319 (735)
Q Consensus 240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L 319 (735)
+++|++|++++|.+++ +|.. .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|... .+|++|
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEE
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEE
Confidence 8888888888888775 4433 3578888888888875 45 47778888888888888873 45432 248888
Q ss_pred EcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccc
Q 004704 320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 399 (735)
Q Consensus 320 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 399 (735)
++++|.++ .+| .+..+++|++|++++|++++... .+++|+.|++++|.+++ +|.. .++|+.|++++|++++
T Consensus 221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 88888877 455 37778888888888887775332 24677777777777775 3332 3667777777777764
Q ss_pred cCChhhhCCCCccEEEccCCcCCCCCchhhhcC-CCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704 400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQL-QKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478 (735)
Q Consensus 400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 478 (735)
. |.. .++|++|++++|.+++ ++ .+ ++|+.|++++|++++ +|..
T Consensus 292 l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~-------------------------- 335 (454)
T 1jl5_A 292 L-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL-------------------------- 335 (454)
T ss_dssp E-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--------------------------
T ss_pred c-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--------------------------
Confidence 2 211 1567777777777764 22 22 467777777777764 3321
Q ss_pred hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704 479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 558 (735)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 558 (735)
+++|+.|++++|+++ .+|. .++
T Consensus 336 ------------------------------------------------------~~~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 336 ------------------------------------------------------PPRLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp ------------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred ------------------------------------------------------CCcCCEEECCCCccc-cccc---hhh
Confidence 135666777777777 4555 356
Q ss_pred cCCeEeCCCCcCcc--cCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc--cCCCCCCCCccCCc
Q 004704 559 AILALNLSNNSLSG--SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG--RTPDKGQFATFDES 634 (735)
Q Consensus 559 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~~~~~~~~~~~ 634 (735)
+|++|++++|++++ .+|.+++. |+.|.+.+.+|.. +++|++|++++|++++ .+|. ++...
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-----sl~~L 421 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-----SVEDL 421 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchh-----hHhhe
Confidence 77777777777776 55555443 2346666666653 4789999999999998 6664 33334
Q ss_pred ccCCCCCCC
Q 004704 635 SYRGNPSLC 643 (735)
Q Consensus 635 ~~~gN~~lc 643 (735)
.+.+|...|
T Consensus 422 ~~~~~~~~~ 430 (454)
T 1jl5_A 422 RMNSERVVD 430 (454)
T ss_dssp ---------
T ss_pred eCcCcccCC
Confidence 455554444
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.9e-38 Score=338.94 Aligned_cols=368 Identities=20% Similarity=0.191 Sum_probs=276.9
Q ss_pred CCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccccccccccc
Q 004704 7 FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVK 86 (735)
Q Consensus 7 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 86 (735)
...+..+..++++++|++|+|++|.+++. | +++.+++|++|++++|++++ +| ++++++|++|++++|.+...
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-- 100 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-- 100 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC--
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee--
Confidence 34455667888999999999999999964 5 68999999999999999986 34 78888999999988876553
Q ss_pred CCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCC
Q 004704 87 TENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKH 166 (735)
Q Consensus 87 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 166 (735)
.+..+++|++|++++|++++. + +..+++|++|++++|++++ ++ ++.+++|++|++++|...+.. .+..+
T Consensus 101 --~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 101 --DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred --ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccC
Confidence 267788888888888888863 3 7788888888888888874 44 347788888888888544443 46677
Q ss_pred CCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEE
Q 004704 167 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELL 246 (735)
Q Consensus 167 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 246 (735)
++|++|++++|++++ +| +. .+++|++|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L 238 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYF 238 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEE
T ss_pred CcCCEEECCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEE
Confidence 888888888888874 55 33 367888888888888753 37777888888888888874 55 4567788888
Q ss_pred EccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcC
Q 004704 247 DLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326 (735)
Q Consensus 247 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l 326 (735)
++++|.+++.. +..+++|+.|++++| +|+.|++++|.+.+.+| ++.++. |+.|++++|..
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~-L~~L~Ls~n~~ 298 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRK-IKELDVTHNTQ 298 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTT-CCCCCCTTCTT
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccccc-CCEEECCCCcc
Confidence 88888877643 345677777776654 35566777777766666 344555 88888888877
Q ss_pred CCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhh
Q 004704 327 EGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN 406 (735)
Q Consensus 327 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 406 (735)
.+.+|. ...+|+.|++++| ++|+.|++++|++++. + +..+++|+.|++++|++++
T Consensus 299 l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~------- 353 (457)
T 3bz5_A 299 LYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD------- 353 (457)
T ss_dssp CCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------
T ss_pred cceecc---CCCcceEechhhc------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------
Confidence 766664 3345555555544 6789999999999875 3 7889999999999999885
Q ss_pred CCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhc
Q 004704 407 EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455 (735)
Q Consensus 407 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 455 (735)
++.|..|++++|.+.|. .++..|+.+++++|+++|.+|..+..
T Consensus 354 -l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 354 -FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp -CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred -ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 24677778889988875 35567888999999999999986544
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=341.76 Aligned_cols=346 Identities=18% Similarity=0.175 Sum_probs=238.8
Q ss_pred EEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCC
Q 004704 220 LLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNN 299 (735)
Q Consensus 220 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 299 (735)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4444444444 344322 235556666666665555555666666666666666666555666666666666666666
Q ss_pred ccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCc
Q 004704 300 MLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIP 378 (735)
Q Consensus 300 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 378 (735)
.+++..+..+..++. |++|++++|++.+..+..|..+++|++|++++|.+.+..+..+ ++++|+.|++++|.+++..+
T Consensus 91 ~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 666333333445544 6666666666666666666677777777777777666655555 66777777777777776666
Q ss_pred ccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccc
Q 004704 379 GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLS 458 (735)
Q Consensus 379 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 458 (735)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+..
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--- 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT---
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC---
Confidence 66777778888888888887766677777888888888887777677666666668888888888877433233332
Q ss_pred cccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccce
Q 004704 459 WRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTG 538 (735)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 538 (735)
+++|+.
T Consensus 247 --------------------------------------------------------------------------l~~L~~ 252 (477)
T 2id5_A 247 --------------------------------------------------------------------------LVYLRF 252 (477)
T ss_dssp --------------------------------------------------------------------------CTTCCE
T ss_pred --------------------------------------------------------------------------ccccCe
Confidence 356777
Q ss_pred EECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcC
Q 004704 539 LDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNL 618 (735)
Q Consensus 539 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l 618 (735)
|+|++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 88888888877777788888888899999988888888888888999999999988877777788888899999999988
Q ss_pred cccCCCCCCCCccCCcccCCCCCCCCccc
Q 004704 619 SGRTPDKGQFATFDESSYRGNPSLCAWLI 647 (735)
Q Consensus 619 ~~~~p~~~~~~~~~~~~~~gN~~lc~~~~ 647 (735)
++.++....+.......+.++...|..|.
T Consensus 333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 333 ACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp ECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred cCccchHhHHhhhhccccCccCceeCCch
Confidence 87765433233333456777888886543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.4e-37 Score=333.13 Aligned_cols=361 Identities=18% Similarity=0.181 Sum_probs=209.3
Q ss_pred CCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhH
Q 004704 108 GSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNM 187 (735)
Q Consensus 108 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 187 (735)
+..+..++++++|++|++++|.++ .+| . +..+++|++|++++|.++++ .+..+++|++|++++|.+++ ++ +
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~ 102 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--V 102 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C
T ss_pred cccccChhHcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--c
Confidence 344455666777777777777776 345 2 34667777777777777664 25666667777777766663 33 2
Q ss_pred HHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCC
Q 004704 188 GVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRL 267 (735)
Q Consensus 188 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 267 (735)
. .+++|++|++++|.+++ +| ++.+++|++|++++|++++ ++ +..+++|++|++++|...+.+ .+..+++|
T Consensus 103 ~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 103 T-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp T-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred C-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 2 35666666666666664 33 5666666666666666653 32 345566666666666433333 34555666
Q ss_pred CEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEccc
Q 004704 268 RHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISE 347 (735)
Q Consensus 268 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 347 (735)
++|++++|++++ +| +..+++|+.|++++|.+++. .++.++. |+.|++++|++++ +| +..+++|++|++++
T Consensus 173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~-L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQ-LTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTT-CSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCC-CCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 666666666553 22 45555555666555555532 1344443 5555555555554 23 44555555555555
Q ss_pred CCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCch
Q 004704 348 NRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD 427 (735)
Q Consensus 348 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 427 (735)
|++++.+. ..+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.
T Consensus 243 N~l~~~~~--~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 243 NPLTELDV--STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp SCCSCCCC--TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CcCCCcCH--HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 55554321 13344444444332 23334444444433333 23334444444444443333332
Q ss_pred hhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhh
Q 004704 428 QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEK 507 (735)
Q Consensus 428 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 507 (735)
..++|+.|++++
T Consensus 305 ---~~~~L~~L~l~~----------------------------------------------------------------- 316 (457)
T 3bz5_A 305 ---QAAGITELDLSQ----------------------------------------------------------------- 316 (457)
T ss_dssp ---TTCCCSCCCCTT-----------------------------------------------------------------
T ss_pred ---CCCcceEechhh-----------------------------------------------------------------
Confidence 112222222222
Q ss_pred hhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEE
Q 004704 508 RAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESL 587 (735)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 587 (735)
.++|+.|++++|++++ ++ ++.+++|+.|++++|++++ ++.|+.|
T Consensus 317 -------------------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L 360 (457)
T 3bz5_A 317 -------------------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKI 360 (457)
T ss_dssp -------------------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGS
T ss_pred -------------------------cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccc
Confidence 2467789999999987 33 8889999999999999986 2456777
Q ss_pred eCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 588 DISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 588 dLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
++++|+++|. ..+..|..+++++|+++|.+|.
T Consensus 361 ~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 361 PALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 8999999876 3455678889999999999986
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-35 Score=325.79 Aligned_cols=324 Identities=26% Similarity=0.339 Sum_probs=205.0
Q ss_pred cccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEE
Q 004704 191 LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHL 270 (735)
Q Consensus 191 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 270 (735)
+++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 34444444444444422 22 4445555555555555442 222 3445555555555555543321 4555555555
Q ss_pred EccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCC
Q 004704 271 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 350 (735)
Q Consensus 271 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 350 (735)
++++|.+.+ ++ .+..+++|++|+++ |.+.+. + .+..++. |+.|++++|.+.+. ..+..+++|++|++++|.+
T Consensus 140 ~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 140 ELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTT-LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp EEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCC-CCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence 555555542 22 24555555555554 233321 2 1444444 66666666655532 2355566666666666666
Q ss_pred CccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhh
Q 004704 351 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 430 (735)
Q Consensus 351 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 430 (735)
.+..+ ...+++|+.|++++|.+.+. +.+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +.
T Consensus 212 ~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 212 SDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred ccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence 65443 23566677777777776643 356777888888888888875443 7778888888888888875433 77
Q ss_pred cCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhc
Q 004704 431 QLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAA 510 (735)
Q Consensus 431 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (735)
.+++|+.|++++|++++..| +.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~-------------------------------------------------------- 306 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--IS-------------------------------------------------------- 306 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GG--------------------------------------------------------
T ss_pred CCCccCeEEcCCCcccCchh--hc--------------------------------------------------------
Confidence 88888888888888774332 21
Q ss_pred cccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCC
Q 004704 511 IDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDIS 590 (735)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 590 (735)
.+++|+.|++++|++++..| ++.+++|+.|++++|.+++. ..++++++|+.|+++
T Consensus 307 ---------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 307 ---------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp ---------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ---------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 23567788888888886555 77888888899988888864 368888899999999
Q ss_pred CCcccccCCccccCCCCCCeEEcccCcCccc
Q 004704 591 YNKLTGQIPPQLTALNFLSIFNVSYNNLSGR 621 (735)
Q Consensus 591 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 621 (735)
+|++++..| +..+++|+.|++++|++++.
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999887776 78888899999999988874
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-35 Score=322.75 Aligned_cols=349 Identities=24% Similarity=0.313 Sum_probs=214.4
Q ss_pred CCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcE
Q 004704 117 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMY 196 (735)
Q Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 196 (735)
+++++.|+++++.+. .+|. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. + ..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP-L-ANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-G-TTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh-h-cCCCCCCE
Confidence 445666666666665 4553 2356666666666666655533 5555556666666655552 222 2 22455555
Q ss_pred EECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccc
Q 004704 197 MDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNN 276 (735)
Q Consensus 197 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 276 (735)
|++++|.+++. +. +..+++|++|++++|.+.+ ++. +..+++|++|+++ |.+.+
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~-~~~~~--------------------- 169 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG-NQVTD--------------------- 169 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE-ESCCC---------------------
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC-CcccC---------------------
Confidence 55555555432 21 4555555555555555542 221 2344455555543 22222
Q ss_pred cCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCC
Q 004704 277 FSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIAS 356 (735)
Q Consensus 277 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 356 (735)
.. .+..+++|++|++++|.+++ ++ .+..++. |+.|++++|.+.+..| +..+++|++|++++|++.+. +.
T Consensus 170 ---~~--~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~ 238 (466)
T 1o6v_A 170 ---LK--PLANLTTLERLDISSNKVSD-IS-VLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GT 238 (466)
T ss_dssp ---CG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTT-CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred ---ch--hhccCCCCCEEECcCCcCCC-Ch-hhccCCC-CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hh
Confidence 11 14445555555555555442 22 2444443 5555555555554333 44455566666666655542 22
Q ss_pred ccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCC
Q 004704 357 SLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLA 436 (735)
Q Consensus 357 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 436 (735)
...+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 2356677777777777765543 6777888888888888875433 7778888888888888886443 77888888
Q ss_pred EEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhcccccee
Q 004704 437 MMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVE 516 (735)
Q Consensus 437 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 516 (735)
.|++++|++++..| +.
T Consensus 313 ~L~L~~n~l~~~~~--~~-------------------------------------------------------------- 328 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VS-------------------------------------------------------------- 328 (466)
T ss_dssp EEECCSSCCSCCGG--GG--------------------------------------------------------------
T ss_pred EEECcCCcCCCchh--hc--------------------------------------------------------------
Confidence 89998888875443 21
Q ss_pred EEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccc
Q 004704 517 IEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596 (735)
Q Consensus 517 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 596 (735)
.+++|+.|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 329 ---------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 329 ---------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ---------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ---------------cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 136778899999988854 468889999999999999998777 8899999999999999996
Q ss_pred cCCcc
Q 004704 597 QIPPQ 601 (735)
Q Consensus 597 ~~p~~ 601 (735)
+|..
T Consensus 390 -~p~~ 393 (466)
T 1o6v_A 390 -APVN 393 (466)
T ss_dssp -CCBC
T ss_pred -Cchh
Confidence 4443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=325.13 Aligned_cols=347 Identities=19% Similarity=0.168 Sum_probs=220.3
Q ss_pred CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704 170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249 (735)
Q Consensus 170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 249 (735)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-------------------- 69 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-------------------- 69 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--------------------
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--------------------
Confidence 35555555555 5555432 35555666655555444455555555555555555554
Q ss_pred CCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCC
Q 004704 250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 329 (735)
Q Consensus 250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 329 (735)
+..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..++. |++|++++|.+.+.
T Consensus 70 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 70 -----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYI 143 (477)
T ss_dssp -----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEE
T ss_pred -----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCcccee
Confidence 333444444444444444444444333333444445555555555544444444444444 55555555555555
Q ss_pred CCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCC
Q 004704 330 VPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 408 (735)
Q Consensus 330 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 408 (735)
.+..|.++++|++|++++|++++..+..+ .+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|......
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence 55555566666666666666655444333 56666666666666666666667777778888888877766666666666
Q ss_pred CCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCC
Q 004704 409 SNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGN 488 (735)
Q Consensus 409 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (735)
.+|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------- 270 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE--------------------------------- 270 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT---------------------------------
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc---------------------------------
Confidence 68888888888888655567888888888888888887555544433
Q ss_pred CCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCC
Q 004704 489 NRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNN 568 (735)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 568 (735)
+++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus 271 --------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 271 --------------------------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred --------------------------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 356788999999998888888999999999999999
Q ss_pred cCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 569 SLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 569 ~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
++++..+..|..+++|+.|+|++|.+....+.. .-......+++..+...+..|.
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence 999877788899999999999999988543221 1112233345566666665554
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.3e-35 Score=311.42 Aligned_cols=334 Identities=21% Similarity=0.227 Sum_probs=271.4
Q ss_pred CCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCE
Q 004704 214 EMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQV 293 (735)
Q Consensus 214 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 293 (735)
.+++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3577888888888876 678777788888999999999888777778888999999999999988777788888899999
Q ss_pred EEeeCCccCCCCCch-hhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCc
Q 004704 294 LDISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA 372 (735)
Q Consensus 294 L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~ 372 (735)
|++++|.++ .+|.. +..++. |++|++++|++++..+..+..+++|++|++++|++++.. ...+++|+.|++++|.
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred EECCCCccC-cCCHHHhcCCCC-CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence 999999988 55554 466666 999999999998878888889999999999999887652 3367889999999998
Q ss_pred ccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCch
Q 004704 373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPC 452 (735)
Q Consensus 373 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 452 (735)
+++. ...++|+.|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|+.|++++|++++..|..
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 8753 3446899999999999844 432 247899999999999854 57889999999999999998776666
Q ss_pred hhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCc
Q 004704 453 FANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSN 532 (735)
Q Consensus 453 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (735)
+..
T Consensus 268 ~~~----------------------------------------------------------------------------- 270 (390)
T 3o6n_A 268 FVK----------------------------------------------------------------------------- 270 (390)
T ss_dssp GTT-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 544
Q ss_pred ccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEE
Q 004704 533 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 612 (735)
Q Consensus 533 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 612 (735)
+++|+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|..++.+++|++|+|++|++++. | +..+++|+.|+
T Consensus 271 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 345 (390)
T ss_dssp CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence 357888999999998 46777788999999999999999 5777789999999999999999854 3 77889999999
Q ss_pred cccCcCcccCCCCCCCCccCCcccCCCCCCCCc
Q 004704 613 VSYNNLSGRTPDKGQFATFDESSYRGNPSLCAW 645 (735)
Q Consensus 613 ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~ 645 (735)
+++|++++.... ..+..+....+.+++..|.+
T Consensus 346 l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 346 LSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred cCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 999999875432 22344555567777777764
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-34 Score=324.24 Aligned_cols=334 Identities=20% Similarity=0.218 Sum_probs=276.5
Q ss_pred CCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEE
Q 004704 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 294 (735)
Q Consensus 215 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 294 (735)
+++++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567888888888876 6787777888899999999998888777788889999999999999888777788889999999
Q ss_pred EeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCccc
Q 004704 295 DISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALN 374 (735)
Q Consensus 295 ~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 374 (735)
++++|.+++..+..+..++. |++|++++|.+++..|..|..+++|++|++++|.+++.. ...+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCC-CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc
Confidence 99999988443344566666 999999999998888888999999999999999888653 236788999999999887
Q ss_pred ccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhh
Q 004704 375 GLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA 454 (735)
Q Consensus 375 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 454 (735)
+. ...++|+.|++++|.++.. +..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+.
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 53 4456899999999999844 3332 3689999999999986 36789999999999999999987777665
Q ss_pred cccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCccc
Q 004704 455 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN 534 (735)
Q Consensus 455 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 534 (735)
.+ +
T Consensus 276 ~l-----------------------------------------------------------------------------~ 278 (597)
T 3oja_B 276 KM-----------------------------------------------------------------------------Q 278 (597)
T ss_dssp TC-----------------------------------------------------------------------------S
T ss_pred Cc-----------------------------------------------------------------------------c
Confidence 43 5
Q ss_pred ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704 535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 614 (735)
Q Consensus 535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 614 (735)
+|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. | +..++.|+.|+++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEee
Confidence 78889999999995 6777888999999999999999 6888899999999999999999865 3 6778899999999
Q ss_pred cCcCcccCCCCCCCCccCCcccCCCCCCCCc
Q 004704 615 YNNLSGRTPDKGQFATFDESSYRGNPSLCAW 645 (735)
Q Consensus 615 ~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~ 645 (735)
+|+++|..+. ..+..+....+.+++..|+.
T Consensus 354 ~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 354 HNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp SSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 9999987542 23455666678899999975
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.8e-35 Score=303.25 Aligned_cols=254 Identities=35% Similarity=0.561 Sum_probs=219.3
Q ss_pred CcEEEcCCCcCCC--CCCccCCCCCCCCEEEccc-CCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEe
Q 004704 316 LEILSMSKNHLEG--NVPVQLNNLERLRILDISE-NRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLN 391 (735)
Q Consensus 316 L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 391 (735)
++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+ .+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 6666666666666 5666666777777777773 66666666555 677777777777777778888888899999999
Q ss_pred CCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCC-CCCEEECcCCcCCCCCCchhhcccccccccCCccCCC
Q 004704 392 LRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQ-KLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS 470 (735)
Q Consensus 392 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 470 (735)
+++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..+
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-------------- 197 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------- 197 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--------------
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC--------------
Confidence 999999988899999999999999999999988999999988 89999999999998888776543
Q ss_pred CCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCC
Q 004704 471 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI 550 (735)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 550 (735)
+ |+.|++++|++++.+
T Consensus 198 ---------------------------------------------------------------~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 198 ---------------------------------------------------------------N-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp ---------------------------------------------------------------C-CSEEECCSSEEEECC
T ss_pred ---------------------------------------------------------------c-ccEEECcCCcccCcC
Confidence 2 778999999999999
Q ss_pred CccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCCCCCCc
Q 004704 551 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDKGQFAT 630 (735)
Q Consensus 551 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 630 (735)
|..++.+++|+.|+|++|.+++.+|. +..+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..+.+..
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~ 292 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR 292 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGG
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccc
Confidence 99999999999999999999977776 89999999999999999999999999999999999999999999999988999
Q ss_pred cCCcccCCCCCCCCcccc
Q 004704 631 FDESSYRGNPSLCAWLIQ 648 (735)
Q Consensus 631 ~~~~~~~gN~~lc~~~~~ 648 (735)
+....+.|||++||.|+.
T Consensus 293 L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 293 FDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp SCGGGTCSSSEEESTTSS
T ss_pred cChHHhcCCCCccCCCCC
Confidence 999999999999997764
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-32 Score=288.18 Aligned_cols=282 Identities=24% Similarity=0.367 Sum_probs=177.5
Q ss_pred CCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEE
Q 004704 240 CFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEIL 319 (735)
Q Consensus 240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L 319 (735)
+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.++ .++. +..++. |+.|
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~-L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNIS-DISP-LANLTK-MYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCC-CCGG-GTTCTT-CCEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCccc-Cchh-hccCCc-eeEE
Confidence 4444444444444443221 4444444444444444442 21 3444455555555555544 2222 334433 5555
Q ss_pred EcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccc
Q 004704 320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 399 (735)
Q Consensus 320 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 399 (735)
++++|......+ .+..+++|++|++++|.+.+..+ ...+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 138 ~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp ECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 555554332222 25555666666666666554333 2356666777777776664422 6677778888888887774
Q ss_pred cCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccch
Q 004704 400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDE 479 (735)
Q Consensus 400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 479 (735)
..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++. + .+.
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~------------------------- 262 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVK------------------------- 262 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGT-------------------------
T ss_pred Cch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHh-------------------------
Confidence 433 6777888888888888875433 77888888888888887642 1 111
Q ss_pred hhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCcccccccc
Q 004704 480 EIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA 559 (735)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 559 (735)
.+++|+.|++++|++++ + +.+..+++
T Consensus 263 ----------------------------------------------------~l~~L~~L~l~~n~l~~-~-~~~~~l~~ 288 (347)
T 4fmz_A 263 ----------------------------------------------------DLTKLKMLNVGSNQISD-I-SVLNNLSQ 288 (347)
T ss_dssp ----------------------------------------------------TCTTCCEEECCSSCCCC-C-GGGGGCTT
T ss_pred ----------------------------------------------------cCCCcCEEEccCCccCC-C-hhhcCCCC
Confidence 23577888888888874 3 45788889
Q ss_pred CCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCc
Q 004704 560 ILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619 (735)
Q Consensus 560 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 619 (735)
|+.|++++|.+++..|..|+++++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999988888888999999999999999887666 788889999999999875
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-32 Score=293.48 Aligned_cols=312 Identities=21% Similarity=0.222 Sum_probs=219.7
Q ss_pred CCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCC
Q 004704 165 KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLE 244 (735)
Q Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 244 (735)
.++++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+++..+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 3567788888888777 677777666788888888888887666667788888888888888877 44445556777788
Q ss_pred EEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCC
Q 004704 245 LLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKN 324 (735)
Q Consensus 245 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n 324 (735)
+|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. + +..++. |+.|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~-L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPS-LFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTT-CSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccc-cceeecccc
Confidence 888888877755555567777777777777777766666677777777777777777632 2 333444 666666666
Q ss_pred cCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChh
Q 004704 325 HLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 404 (735)
Q Consensus 325 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 404 (735)
.+++. ...++|++|++++| .+... |.. ..++|+.|++++|.+++. .+
T Consensus 197 ~l~~~-----~~~~~L~~L~l~~n-----------------------~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 197 LLSTL-----AIPIAVEELDASHN-----------------------SINVV-RGP--VNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CCSEE-----ECCSSCSEEECCSS-----------------------CCCEE-ECC--CCSSCCEEECCSSCCCCC--GG
T ss_pred ccccc-----CCCCcceEEECCCC-----------------------eeeec-ccc--ccccccEEECCCCCCccc--HH
Confidence 55431 11234444444444 44432 211 235677777777777643 46
Q ss_pred hhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcc
Q 004704 405 INEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFG 484 (735)
Q Consensus 405 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (735)
+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++ +|..+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~------------------------------- 291 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG------------------------------- 291 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSS-------------------------------
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCccc-------------------------------
Confidence 7777888888888888887777788888888888888888763 22211
Q ss_pred cCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEe
Q 004704 485 SLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALN 564 (735)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 564 (735)
..+++|+.|++++|+++ .+|..++.+++|+.|+
T Consensus 292 ----------------------------------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 292 ----------------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp ----------------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred ----------------------------------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 12367888899999888 6777888899999999
Q ss_pred CCCCcCcccCcccccCcCCCCEEeCCCCccccc
Q 004704 565 LSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 597 (735)
Q Consensus 565 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 597 (735)
+++|.+++. | +..+++|+.|++++|++++.
T Consensus 325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 999999854 3 77889999999999999864
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.8e-32 Score=284.67 Aligned_cols=305 Identities=22% Similarity=0.287 Sum_probs=186.6
Q ss_pred CCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCc
Q 004704 116 HQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLM 195 (735)
Q Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 195 (735)
.+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++ .+ ..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~-~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-AL-QNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GG-TTCTTCS
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HH-cCCCcCC
Confidence 3444444444444443 3332 2244444445554444444322 444455555555555544 222 12 2245555
Q ss_pred EEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEcccc
Q 004704 196 YMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENN 275 (735)
Q Consensus 196 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 275 (735)
+|++++|.+.+ ++. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 55555555543 222 55555566666665544333332 3456666666666666554332 556666666666666
Q ss_pred ccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCC
Q 004704 276 NFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA 355 (735)
Q Consensus 276 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 355 (735)
.+.+.. . +..+++|+.|++++|.+++..+ +..++. |++|++++|++++..+ +..+++|++|++++|.+++. +
T Consensus 188 ~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~ 259 (347)
T 4fmz_A 188 QIEDIS-P-LASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N 259 (347)
T ss_dssp CCCCCG-G-GGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred cccccc-c-ccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h
Confidence 665332 2 5566677777777776663322 455554 7777777777764433 66777777777777777653 3
Q ss_pred CccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCC
Q 004704 356 SSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL 435 (735)
Q Consensus 356 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 435 (735)
....+++|+.|++++|.+++. +.+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| +..+++|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 333677888888888887764 457788899999999999988888889999999999999999986555 8889999
Q ss_pred CEEECcCCcCC
Q 004704 436 AMMDLSRNKFS 446 (735)
Q Consensus 436 ~~L~Ls~N~l~ 446 (735)
+.|++++|+++
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.7e-32 Score=303.41 Aligned_cols=312 Identities=21% Similarity=0.208 Sum_probs=216.4
Q ss_pred CCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCE
Q 004704 166 HDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLEL 245 (735)
Q Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 245 (735)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++ +++..+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence 456777777777776 6677766667788888888888876666677778888888888887773 45555567777777
Q ss_pred EEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCc
Q 004704 246 LDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNH 325 (735)
Q Consensus 246 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~ 325 (735)
|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++. + +..++. |+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~-L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPS-LFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTT-CSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhh-hhhhhcccCc
Confidence 77777777765555567777777777777777766666677777777777777777632 2 333444 6666666665
Q ss_pred CCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhh
Q 004704 326 LEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQI 405 (735)
Q Consensus 326 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 405 (735)
+++. ....+|+.|++++|.+.. ..+. + .++|+.|++++|.+++ +.++
T Consensus 204 l~~l-----~~~~~L~~L~ls~n~l~~-----------------------~~~~-~--~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 204 LSTL-----AIPIAVEELDASHNSINV-----------------------VRGP-V--NVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp CSEE-----ECCTTCSEEECCSSCCCE-----------------------EECS-C--CSCCCEEECCSSCCCC--CGGG
T ss_pred cccc-----cCCchhheeeccCCcccc-----------------------cccc-c--CCCCCEEECCCCCCCC--Chhh
Confidence 5531 122345555555554432 2111 1 2467777777777764 3567
Q ss_pred hCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhccc
Q 004704 406 NEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGS 485 (735)
Q Consensus 406 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (735)
..+++|+.|+|++|.+.+..|..+..+++|+.|++++|++++ +|..+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~-------------------------------- 297 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG-------------------------------- 297 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSS--------------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccc--------------------------------
Confidence 777788888888888877777778888888888888887764 22211
Q ss_pred CCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeC
Q 004704 486 LGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNL 565 (735)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 565 (735)
..+++|+.|+|++|.++ .+|..++.+++|+.|+|
T Consensus 298 ---------------------------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 298 ---------------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp ---------------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred ---------------------------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 12367788888888888 67888888899999999
Q ss_pred CCCcCcccCcccccCcCCCCEEeCCCCcccccC
Q 004704 566 SNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598 (735)
Q Consensus 566 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 598 (735)
++|.+++. | ++.+++|+.|++++|.+.+..
T Consensus 332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 99998854 3 677888999999999988643
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5e-33 Score=287.33 Aligned_cols=251 Identities=29% Similarity=0.494 Sum_probs=193.4
Q ss_pred CCCCEEEeeCCccCC--CCCchhhhhcccCcEEEcCC-CcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCcc
Q 004704 289 TSLQVLDISNNMLSG--HIPHWMGNFSSELEILSMSK-NHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVE 364 (735)
Q Consensus 289 ~~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~ 364 (735)
.+++.|++++|.+++ .+|..+..++. |++|++++ |.+.+.+|..+..+++|++|++++|.+++.++..+ .+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 355666666666665 56666666555 66666663 66666666666666666677776666665555544 677777
Q ss_pred EEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCC-CccEEEccCCcCCCCCchhhhcCCCCCEEECcCC
Q 004704 365 HLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHS-NLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443 (735)
Q Consensus 365 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 443 (735)
+|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 777777777777777888888888888888888878888888877 888888888888888888888887 888888888
Q ss_pred cCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecc
Q 004704 444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN 523 (735)
Q Consensus 444 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 523 (735)
++++..|..+..
T Consensus 208 ~l~~~~~~~~~~-------------------------------------------------------------------- 219 (313)
T 1ogq_A 208 MLEGDASVLFGS-------------------------------------------------------------------- 219 (313)
T ss_dssp EEEECCGGGCCT--------------------------------------------------------------------
T ss_pred cccCcCCHHHhc--------------------------------------------------------------------
Confidence 888766665543
Q ss_pred ccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcccc
Q 004704 524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLT 603 (735)
Q Consensus 524 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 603 (735)
+++|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..|+.+++|++|||++|+++|.+|.. .
T Consensus 220 ---------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 220 ---------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp ---------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred ---------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 25677788888888866665 788899999999999999899999999999999999999999999886 8
Q ss_pred CCCCCCeEEcccCc-Ccc
Q 004704 604 ALNFLSIFNVSYNN-LSG 620 (735)
Q Consensus 604 ~l~~L~~L~ls~N~-l~~ 620 (735)
.+++|+.+++++|+ +.|
T Consensus 289 ~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TGGGSCGGGTCSSSEEES
T ss_pred cccccChHHhcCCCCccC
Confidence 88999999999998 555
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=3.2e-35 Score=322.44 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=115.2
Q ss_pred CCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCC----CCCcccCCCCCCCEEECCCccccCccchhhhhCCC-
Q 004704 167 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEG----NIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCF- 241 (735)
Q Consensus 167 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 241 (735)
++|++|++++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567788887777644444445557788888888888764 34556677788888888888877545555555565
Q ss_pred ---CCCEEEccCCCCCC----cCcccccCCCCCCEEEccccccCcccccccc-----CCCCCCEEEeeCCccCCCC----
Q 004704 242 ---SLELLDLSNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGLL-----SSTSLQVLDISNNMLSGHI---- 305 (735)
Q Consensus 242 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l~~~~---- 305 (735)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 58888888887774 3466677777777777777777644333221 2456777777777766432
Q ss_pred CchhhhhcccCcEEEcCCCcCCCCCCccCC-----CCCCCCEEEcccCCCCc
Q 004704 306 PHWMGNFSSELEILSMSKNHLEGNVPVQLN-----NLERLRILDISENRLSG 352 (735)
Q Consensus 306 p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~ 352 (735)
+..+..++. |++|++++|.+.+..+..+. ..++|++|++++|.+++
T Consensus 163 ~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 163 ASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 333344444 66666666665533222221 13355555555555543
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4e-31 Score=276.08 Aligned_cols=290 Identities=21% Similarity=0.280 Sum_probs=192.4
Q ss_pred CCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEe
Q 004704 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDI 296 (735)
Q Consensus 217 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 296 (735)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6788888888876 666644 357888888888888766777888888888888888888777777888888888888
Q ss_pred eCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCccccc
Q 004704 297 SNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGL 376 (735)
Q Consensus 297 ~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 376 (735)
++|.++ .+|..+. + +|++|++++|++.+..+..+..+++|++|++++|.++.. +.
T Consensus 110 ~~n~l~-~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------GF 164 (332)
T ss_dssp CSSCCC-SCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------GS
T ss_pred CCCcCC-ccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------CC
Confidence 888877 5665544 3 377777777777766666677777777777777766421 12
Q ss_pred CcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcc
Q 004704 377 IPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 456 (735)
Q Consensus 377 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 456 (735)
.+..+..+ +|+.|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~- 239 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF- 239 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence 23333333 45555555555552 333332 45666666666666555566666666666666666666544443332
Q ss_pred cccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCccccc
Q 004704 457 LSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRV 536 (735)
Q Consensus 457 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 536 (735)
+++|
T Consensus 240 ----------------------------------------------------------------------------l~~L 243 (332)
T 2ft3_A 240 ----------------------------------------------------------------------------LPTL 243 (332)
T ss_dssp ----------------------------------------------------------------------------CTTC
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2456
Q ss_pred ceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCc------CCCCEEeCCCCccc--ccCCccccCCCCC
Q 004704 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNL------KMIESLDISYNKLT--GQIPPQLTALNFL 608 (735)
Q Consensus 537 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--~~~p~~l~~l~~L 608 (735)
+.|++++|+++ .+|..++.+++|+.|++++|++++..+..|... ..|+.|++++|.+. +..|..+..++.|
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence 66777777776 666667777777777777777776666666543 56777888888776 5667777777888
Q ss_pred CeEEcccCc
Q 004704 609 SIFNVSYNN 617 (735)
Q Consensus 609 ~~L~ls~N~ 617 (735)
+.+++++|+
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 888877774
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-30 Score=272.62 Aligned_cols=250 Identities=26% Similarity=0.322 Sum_probs=177.3
Q ss_pred cCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEc
Q 004704 193 KLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYF 272 (735)
Q Consensus 193 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 272 (735)
+++.++++++.++ .+|..+. ++|++|++++|.++ .++...+.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666665 4554442 46666666666665 344444456667777777777776666667777777777777
Q ss_pred cccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCC--CCCCccCCCCCCCCEEEcccCCC
Q 004704 273 ENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLE--GNVPVQLNNLERLRILDISENRL 350 (735)
Q Consensus 273 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l 350 (735)
++|.++ .+|..+. ++|++|++++|.+++..+..+..++. |+.|++++|.++ +..+..+..+ +|++|++++|++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 777776 4444433 67777777777777444445666665 888888888775 3566677777 888888888888
Q ss_pred CccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhh
Q 004704 351 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC 430 (735)
Q Consensus 351 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 430 (735)
++.+... .++|++|++++|.+++..+..+..+++|+.|++++|++++..+.++..+++|++|++++|+++ .+|..+.
T Consensus 185 ~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 185 TGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp SSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred CccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 7644332 267888888888888777778888888888888888888777778888888888888888888 6777788
Q ss_pred cCCCCCEEECcCCcCCCCCCchhh
Q 004704 431 QLQKLAMMDLSRNKFSGSIPPCFA 454 (735)
Q Consensus 431 ~l~~L~~L~Ls~N~l~~~~p~~~~ 454 (735)
.+++|+.|++++|++++..+..|.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSS
T ss_pred cCccCCEEECCCCCCCccChhHcc
Confidence 888888888888888755544443
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-34 Score=317.90 Aligned_cols=383 Identities=19% Similarity=0.124 Sum_probs=273.6
Q ss_pred CCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeCCCCCC----CCchhhhCCCC
Q 004704 44 TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNG----SYPDFLLHQYH 119 (735)
Q Consensus 44 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~ 119 (735)
++|++||+++|++++......+..+++|++ |++++|++++ .++..+..+++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~-------------------------L~L~~~~l~~~~~~~l~~~l~~~~~ 57 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQV-------------------------VRLDDCGLTEARCKDISSALRVNPA 57 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSE-------------------------EEEESSCCCHHHHHHHHHHHHTCTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccE-------------------------EEccCCCCCHHHHHHHHHHHHhCCC
Confidence 457788888887764332223455555554 4555555542 35667788889
Q ss_pred CCEEEccCCcCcccCchHHHhCCC----CCcEEECcCCcCcc----cCcCCcCCCCCcCEEEccCCcCCCcCChhHHHh-
Q 004704 120 LKYLDLSHNKLVGNFPTWLLRNNP----KLEVLLLKNNSFSG----ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI- 190 (735)
Q Consensus 120 L~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~- 190 (735)
|++|++++|.+++..+..++..++ +|++|++++|.++. ..+..+..+++|++|++++|.+++..+..+...
T Consensus 58 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 137 (461)
T 1z7x_W 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH
Confidence 999999999887655666665666 69999999998884 346678888999999999998875545554443
Q ss_pred ---cccCcEEECcCCcCCCC----CCcccCCCCCCCEEECCCccccCccchhhh----hCCCCCCEEEccCCCCCCc---
Q 004704 191 ---LQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNYFSGGLSQSVV----TGCFSLELLDLSNNNFEGQ--- 256 (735)
Q Consensus 191 ---l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~--- 256 (735)
.++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ...++|++|++++|.+++.
T Consensus 138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 34699999999988763 355566788999999999988744333332 2356899999999998864
Q ss_pred -CcccccCCCCCCEEEccccccCccc-----cccccCCCCCCEEEeeCCccCCC----CCchhhhhcccCcEEEcCCCcC
Q 004704 257 -FFSEYMNLTRLRHLYFENNNFSGKI-----KDGLLSSTSLQVLDISNNMLSGH----IPHWMGNFSSELEILSMSKNHL 326 (735)
Q Consensus 257 -~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~~L~~L~l~~n~l 326 (735)
++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..++. |++|++++|.+
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i 296 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-CCEEECTTCCC
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC-cceEECCCCCC
Confidence 4667778899999999999887532 22233578999999999988843 5666666766 99999999988
Q ss_pred CCCCCccCC-----CCCCCCEEEcccCCCCccC----CCcc-CCCCccEEEccCCcccccCcccccC-----CCCCcEEe
Q 004704 327 EGNVPVQLN-----NLERLRILDISENRLSGPI----ASSL-NLSSVEHLSLQKNALNGLIPGELFR-----SCKLVTLN 391 (735)
Q Consensus 327 ~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~----~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~ 391 (735)
.+..+..+. ..++|++|++++|.+++.. +..+ .+++|++|++++|.+.+..+..+.. .++|++|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 654333222 3368999999999887652 2222 5788999999999887665544443 67899999
Q ss_pred CCCCcccc----cCChhhhCCCCccEEEccCCcCCCCCchhhh-----cCCCCCEEECcCCcCCCCCCch
Q 004704 392 LRDNTFSG----RIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-----QLQKLAMMDLSRNKFSGSIPPC 452 (735)
Q Consensus 392 l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~p~~ 452 (735)
+++|.+++ .+|..+..+++|++|++++|++++.....+. ...+|+.|++.++.+....+..
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 99999886 6788888889999999999988754222222 2346888888888776444443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-30 Score=270.99 Aligned_cols=292 Identities=22% Similarity=0.281 Sum_probs=188.7
Q ss_pred CCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEE
Q 004704 216 KELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLD 295 (735)
Q Consensus 216 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 295 (735)
.+++.++++++.++ .+|..+ .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 36788888888776 566543 35778888888888876666778888888888888888766677777888888888
Q ss_pred eeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccc
Q 004704 296 ISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNG 375 (735)
Q Consensus 296 l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 375 (735)
+++|.++ .+|..+. + +|++|++++|++++..+..+..+++|++|++++|.+... +
T Consensus 107 Ls~n~l~-~l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~ 161 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------G 161 (330)
T ss_dssp CCSSCCS-BCCSSCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------G
T ss_pred CCCCcCC-ccChhhc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------C
Confidence 8888777 5665443 2 377777777777766666666777777777777666421 1
Q ss_pred cCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhc
Q 004704 376 LIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455 (735)
Q Consensus 376 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 455 (735)
..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 23344455555555555555555 2333332 56666666666666555566666666666666666665444433322
Q ss_pred ccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccc
Q 004704 456 VLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNR 535 (735)
Q Consensus 456 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 535 (735)
+++
T Consensus 239 -----------------------------------------------------------------------------l~~ 241 (330)
T 1xku_A 239 -----------------------------------------------------------------------------TPH 241 (330)
T ss_dssp -----------------------------------------------------------------------------STT
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 245
Q ss_pred cceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccC------cCCCCEEeCCCCcccc--cCCccccCCCC
Q 004704 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSN------LKMIESLDISYNKLTG--QIPPQLTALNF 607 (735)
Q Consensus 536 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~~--~~p~~l~~l~~ 607 (735)
|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|.. ...|+.|++++|.+.. ..|..+..+..
T Consensus 242 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320 (330)
T ss_dssp CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence 566666666666 56666677777777777777777655555543 2667777777777753 45667777777
Q ss_pred CCeEEcccCc
Q 004704 608 LSIFNVSYNN 617 (735)
Q Consensus 608 L~~L~ls~N~ 617 (735)
++.+++++|+
T Consensus 321 l~~l~L~~N~ 330 (330)
T 1xku_A 321 RAAVQLGNYK 330 (330)
T ss_dssp GGGEEC----
T ss_pred eeEEEecccC
Confidence 7777777774
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.5e-30 Score=269.98 Aligned_cols=251 Identities=20% Similarity=0.257 Sum_probs=213.1
Q ss_pred ccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEE
Q 004704 192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLY 271 (735)
Q Consensus 192 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 271 (735)
.+++.++++++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 37999999999988 6776654 68999999999998 56665668899999999999999988899999999999999
Q ss_pred ccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC--CCCccCCCCCCCCEEEcccCC
Q 004704 272 FENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG--NVPVQLNNLERLRILDISENR 349 (735)
Q Consensus 272 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~ 349 (735)
+++|.++ .+|..+. ++|++|++++|.+++..+..+..++. |+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcc-ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 9999998 5665554 79999999999999666666777777 9999999999964 677889999999999999999
Q ss_pred CCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhh
Q 004704 350 LSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL 429 (735)
Q Consensus 350 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 429 (735)
++..+... .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+
T Consensus 183 l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 183 ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred cccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 98654433 278899999999988888888888888999999999888777778888888999999988888 677788
Q ss_pred hcCCCCCEEECcCCcCCCCCCchh
Q 004704 430 CQLQKLAMMDLSRNKFSGSIPPCF 453 (735)
Q Consensus 430 ~~l~~L~~L~Ls~N~l~~~~p~~~ 453 (735)
..+++|++|++++|++++..+..|
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ccCCCcCEEECCCCcCCccChhhc
Confidence 888888888888888876555444
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.1e-31 Score=301.82 Aligned_cols=397 Identities=12% Similarity=0.049 Sum_probs=233.0
Q ss_pred CCCCCcEEECcCCcCcccCcCCcCC-CC-CcCEEEccCCc-CCCcCChhHHHhcccCcEEECcCCcCCCC----CCcccC
Q 004704 141 NNPKLEVLLLKNNSFSGILQLPKAK-HD-FLHHLDISCNN-FRGKLPHNMGVILQKLMYMDISKNCFEGN----IPYSAG 213 (735)
Q Consensus 141 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~-~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~ 213 (735)
.+++|++|+|++|.+++.....+.. ++ +|++|++++|. ++......+...+++|++|++++|.+++. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555555554433322322 22 26666665554 11111111222356666666666665443 222334
Q ss_pred CCCCCCEEECCCccccCcc---chhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccC---ccccccccC
Q 004704 214 EMKELSLLDLSRNYFSGGL---SQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFS---GKIKDGLLS 287 (735)
Q Consensus 214 ~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~ 287 (735)
.+++|++|++++|.+++.- -..++..+++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 5566666666666664111 11223456677777777766664 4456666777777777643222 223345566
Q ss_pred CCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCC-ccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccE
Q 004704 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSL-NLSSVEH 365 (735)
Q Consensus 288 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~ 365 (735)
+++|+.|+++++... .+|..+..++. |++|++++|.+++... ..+..+++|++|+++++-..+.++... .+++|++
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccchh-HHHHHHhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 777888877775433 56666666665 8888888877654332 335677888888887332222222222 5777888
Q ss_pred EEccC-----------CcccccC-cccccCCCCCcEEeCCCCcccccCChhhhC-CCCccEEEcc----CCcCCCC----
Q 004704 366 LSLQK-----------NALNGLI-PGELFRSCKLVTLNLRDNTFSGRIPHQINE-HSNLRFLLLG----GNHLQGP---- 424 (735)
Q Consensus 366 L~l~~-----------n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~---- 424 (735)
|++++ +.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 88873 4554332 222345788888888888887766666665 7888888885 5667653
Q ss_pred -CchhhhcCCCCCEEECcCCc--CCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhh
Q 004704 425 -IPDQLCQLQKLAMMDLSRNK--FSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRW 501 (735)
Q Consensus 425 -~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (735)
++..+..+++|+.|++++|. +++..+..+.
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~----------------------------------------------- 459 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG----------------------------------------------- 459 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----------------------------------------------
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----------------------------------------------
Confidence 33446678888888887543 3322111111
Q ss_pred hhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccC-CCCccccccccCCeEeCCCCcCccc-Cccccc
Q 004704 502 LSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTG-EIPSDIGQLQAILALNLSNNSLSGS-IPESFS 579 (735)
Q Consensus 502 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~ 579 (735)
..+++|+.|++++|++++ .++..+..+++|++|++++|.+++. ++..+.
T Consensus 460 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 460 -----------------------------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp -----------------------------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred -----------------------------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 123567888888888775 3444556778888888888887754 344456
Q ss_pred CcCCCCEEeCCCCcccccCCccc-cCCCCCCeEEcccC
Q 004704 580 NLKMIESLDISYNKLTGQIPPQL-TALNFLSIFNVSYN 616 (735)
Q Consensus 580 ~l~~L~~LdLs~N~l~~~~p~~l-~~l~~L~~L~ls~N 616 (735)
.+++|++|+|++|+++..-...+ ..++.+....+..+
T Consensus 511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 78888888888888876533333 35566666555544
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2e-31 Score=302.07 Aligned_cols=353 Identities=16% Similarity=0.059 Sum_probs=227.9
Q ss_pred eeEEEeeCCC-CCC-CCchhhhCCCCCCEEEccCCcCcccCch---HHHhCCCCCcEEECcCCcCccc----CcCCcCCC
Q 004704 96 LIVLGLTKCN-LNG-SYPDFLLHQYHLKYLDLSHNKLVGNFPT---WLLRNNPKLEVLLLKNNSFSGI----LQLPKAKH 166 (735)
Q Consensus 96 L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~ 166 (735)
|++|+|++|. ++. .++....++++|++|+|++|.+++.-.. .+...+++|++|++++|.+++. .+..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666654 111 1223334677788888888777644222 2334677888888887777632 23334567
Q ss_pred CCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCC---CCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCC
Q 004704 167 DFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFE---GNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSL 243 (735)
Q Consensus 167 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 243 (735)
++|++|++++|.+. .+|..+.. +++|++|+++..... +..+..+..+++|+.|+++++... .++. ++..+++|
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L 295 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFFKA-AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQI 295 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHHHH-CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGC
T ss_pred CCCcEEeccCccHH-HHHHHHhh-hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCC
Confidence 78888888887776 35544444 678888888753322 234456677788888888775432 3443 34567888
Q ss_pred CEEEccCCCCCCcCc-ccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeC-----------CccCCCCCch-hh
Q 004704 244 ELLDLSNNNFEGQFF-SEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISN-----------NMLSGHIPHW-MG 310 (735)
Q Consensus 244 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~-----------n~l~~~~p~~-~~ 310 (735)
++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++|++|++++ +.+++..... ..
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 888888888664333 3357788888888883322223333445678888888883 4555332222 23
Q ss_pred hhcccCcEEEcCCCcCCCCCCccCCC-CCCCCEEEcc----cCCCCccC-----CCcc-CCCCccEEEccCCc--ccccC
Q 004704 311 NFSSELEILSMSKNHLEGNVPVQLNN-LERLRILDIS----ENRLSGPI-----ASSL-NLSSVEHLSLQKNA--LNGLI 377 (735)
Q Consensus 311 ~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~-----~~~~-~l~~L~~L~l~~n~--l~~~~ 377 (735)
.++. |++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.+ +... ++++|+.|++++|. +++..
T Consensus 376 ~~~~-L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQE-LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTT-CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCcc-CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 3444 888888888887665555544 7788888886 55666532 1122 68889999987654 55544
Q ss_pred ccccc-CCCCCcEEeCCCCccccc-CChhhhCCCCccEEEccCCcCCCC-CchhhhcCCCCCEEECcCCcCCCCCCchh
Q 004704 378 PGELF-RSCKLVTLNLRDNTFSGR-IPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRNKFSGSIPPCF 453 (735)
Q Consensus 378 ~~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 453 (735)
...+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|++++.....+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 44443 478899999999988763 455567788999999999987644 34445678899999999999876543333
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.3e-28 Score=252.19 Aligned_cols=250 Identities=21% Similarity=0.271 Sum_probs=202.1
Q ss_pred CEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccC--C-CccCCCCccEEEc
Q 004704 292 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPI--A-SSLNLSSVEHLSL 368 (735)
Q Consensus 292 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~~~l~~L~~L~l 368 (735)
+.++.+++.++ .+|..+. .++++|++++|+++...+..|..+++|++|++++|.++... + ....+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777776 6665443 34888888888888655556788888888888888887432 2 2237888999999
Q ss_pred cCCcccccCcccccCCCCCcEEeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC
Q 004704 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 447 (735)
Q Consensus 369 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 447 (735)
++|.+.+ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 9988874 56678889999999999999986554 578889999999999999988888888899999999999998875
Q ss_pred -CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccc
Q 004704 448 -SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 526 (735)
Q Consensus 448 -~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 526 (735)
..|..+..
T Consensus 165 ~~~~~~~~~----------------------------------------------------------------------- 173 (306)
T 2z66_A 165 NFLPDIFTE----------------------------------------------------------------------- 173 (306)
T ss_dssp GEECSCCTT-----------------------------------------------------------------------
T ss_pred ccchhHHhh-----------------------------------------------------------------------
Confidence 34443332
Q ss_pred cccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCC
Q 004704 527 IYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 606 (735)
Q Consensus 527 ~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 606 (735)
+++|+.|++++|++++..|..++.+++|++|+|++|.+++..+..+..+++|+.|||++|++++..|..+..++
T Consensus 174 ------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 174 ------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp ------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred ------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 36788899999999988888899999999999999999987777899999999999999999999999999885
Q ss_pred -CCCeEEcccCcCcccCC
Q 004704 607 -FLSIFNVSYNNLSGRTP 623 (735)
Q Consensus 607 -~L~~L~ls~N~l~~~~p 623 (735)
+|++|++++|++++.++
T Consensus 248 ~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 248 SSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTCCEEECTTCCEECSGG
T ss_pred ccCCEEEccCCCeecccC
Confidence 89999999999887554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.6e-29 Score=260.42 Aligned_cols=207 Identities=18% Similarity=0.182 Sum_probs=126.0
Q ss_pred CCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEE
Q 004704 215 MKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVL 294 (735)
Q Consensus 215 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 294 (735)
++.....+.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455666777666 566543 2466777777777665555566666666666666666665555556666666666
Q ss_pred EeeCCccCCCCCch-hhhhcccCcEEEcCCCcCCCCCC-ccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCc
Q 004704 295 DISNNMLSGHIPHW-MGNFSSELEILSMSKNHLEGNVP-VQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNA 372 (735)
Q Consensus 295 ~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~ 372 (735)
++++|.+++ +|.. +..++. |++|++++|++++..+ ..+..+++|++|++++|. .
T Consensus 106 ~Ls~n~l~~-~~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~----------------------~ 161 (353)
T 2z80_A 106 DLSYNYLSN-LSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD----------------------T 161 (353)
T ss_dssp ECCSSCCSS-CCHHHHTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS----------------------S
T ss_pred ECCCCcCCc-CCHhHhCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCCc----------------------c
Confidence 666666653 3332 444444 5555555555553222 244444444444444442 2
Q ss_pred ccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCC
Q 004704 373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSI 449 (735)
Q Consensus 373 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 449 (735)
+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+....+..+..+++|+.|++++|++++..
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 34444555666677777777777777666777777778888888888776433334455778888888888777543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.8e-28 Score=254.42 Aligned_cols=275 Identities=20% Similarity=0.191 Sum_probs=161.2
Q ss_pred CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704 170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249 (735)
Q Consensus 170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 249 (735)
...+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+.++++|++|+++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECC
Confidence 33444555554 4454432 25555555555555433334555555555555555554 2333333445555555555
Q ss_pred CCCCCCcCcccccCCCCCCEEEccccccCcccc-ccccCCCCCCEEEeeCCc-cCCCCCchhhhhcccCcEEEcCCCcCC
Q 004704 250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQVLDISNNM-LSGHIPHWMGNFSSELEILSMSKNHLE 327 (735)
Q Consensus 250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~n~l~ 327 (735)
+|.+++..+..+.++++|++|++++|.+++..+ ..+..+++|++|++++|. +.+..+..+..++. |++|++++|+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~ 187 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQ 187 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCC
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCCCcC
Confidence 555554444445555555555555555553222 245555566666666552 43333344555544 666666666666
Q ss_pred CCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCccccc---CCCCCcEEeCCCCcccc----
Q 004704 328 GNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELF---RSCKLVTLNLRDNTFSG---- 399 (735)
Q Consensus 328 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~---- 399 (735)
+..|..+..+++|++|++++|.+.......+ .+++|+.|++++|.+++..+..+. ....++.++++++.+++
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 5556666666666666666666544333323 456666666666666654433322 34567788888877765
Q ss_pred cCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCC
Q 004704 400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIP 450 (735)
Q Consensus 400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 450 (735)
.+|.++..+++|++|++++|+++...+..|..+++|+.|++++|++.+..|
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 467888999999999999999995434446899999999999999987655
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.5e-27 Score=257.11 Aligned_cols=250 Identities=20% Similarity=0.233 Sum_probs=204.1
Q ss_pred CCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEcc
Q 004704 291 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ 369 (735)
Q Consensus 291 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~ 369 (735)
...++.++..++ .+|..+. .+++.|++++|++++..+..|.++++|++|++++|.+++..+..+ ++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456667776666 5665443 348888888888887777888888888888888888887776666 78888888888
Q ss_pred CCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC-cCCCCCchhhhcCCCCCEEECcCCcCCCC
Q 004704 370 KNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN-HLQGPIPDQLCQLQKLAMMDLSRNKFSGS 448 (735)
Q Consensus 370 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 448 (735)
+|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++| .+....+..|..+++|+.|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 88888777777888889999999999988766778888999999999985 44433445688899999999999988742
Q ss_pred CCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccc
Q 004704 449 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY 528 (735)
Q Consensus 449 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 528 (735)
|. +
T Consensus 212 -~~-~--------------------------------------------------------------------------- 214 (452)
T 3zyi_A 212 -PN-L--------------------------------------------------------------------------- 214 (452)
T ss_dssp -CC-C---------------------------------------------------------------------------
T ss_pred -cc-c---------------------------------------------------------------------------
Confidence 31 1
Q ss_pred cCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCC
Q 004704 529 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 608 (735)
Q Consensus 529 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 608 (735)
..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|
T Consensus 215 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 215 --TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp --TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred --cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 123678889999999998889999999999999999999999989999999999999999999998888888999999
Q ss_pred CeEEcccCcCcccCC
Q 004704 609 SIFNVSYNNLSGRTP 623 (735)
Q Consensus 609 ~~L~ls~N~l~~~~p 623 (735)
+.|++++|++.+.+.
T Consensus 293 ~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 293 VELHLHHNPWNCDCD 307 (452)
T ss_dssp CEEECCSSCEECSTT
T ss_pred CEEEccCCCcCCCCC
Confidence 999999999887654
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=255.69 Aligned_cols=251 Identities=21% Similarity=0.267 Sum_probs=219.0
Q ss_pred CCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEc
Q 004704 290 SLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSL 368 (735)
Q Consensus 290 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l 368 (735)
..+.++.++..++ .+|..+. .+++.|++++|++++..+..|.++++|++|++++|.+++..+..+ ++++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4678888898888 7887654 449999999999998888999999999999999999998777666 8999999999
Q ss_pred cCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCc-CCCCCchhhhcCCCCCEEECcCCcCCC
Q 004704 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNH-LQGPIPDQLCQLQKLAMMDLSRNKFSG 447 (735)
Q Consensus 369 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 447 (735)
++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|. +....+..|.++++|+.|++++|+++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 9999998877789999999999999999997777789999999999999954 44444457899999999999999987
Q ss_pred CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecccccc
Q 004704 448 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI 527 (735)
Q Consensus 448 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 527 (735)
.+|. +
T Consensus 199 ~~~~-~-------------------------------------------------------------------------- 203 (440)
T 3zyj_A 199 EIPN-L-------------------------------------------------------------------------- 203 (440)
T ss_dssp SCCC-C--------------------------------------------------------------------------
T ss_pred cccc-c--------------------------------------------------------------------------
Confidence 3332 1
Q ss_pred ccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCC
Q 004704 528 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF 607 (735)
Q Consensus 528 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 607 (735)
..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++
T Consensus 204 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 204 ---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp ---TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ---CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 12467889999999999888999999999999999999999999999999999999999999999888888999999
Q ss_pred CCeEEcccCcCcccCC
Q 004704 608 LSIFNVSYNNLSGRTP 623 (735)
Q Consensus 608 L~~L~ls~N~l~~~~p 623 (735)
|+.|++++|++.+.+.
T Consensus 281 L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCEEECCSSCEECSST
T ss_pred CCEEEcCCCCccCCCC
Confidence 9999999999987664
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.5e-27 Score=255.35 Aligned_cols=246 Identities=25% Similarity=0.331 Sum_probs=141.6
Q ss_pred CCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcc
Q 004704 267 LRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDIS 346 (735)
Q Consensus 267 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 346 (735)
.+.++..+..++ .+|..+. ++++.|++++|.+++..+..+..++. |++|++++|.+++..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSS-CCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCC-CCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345555555555 4444332 45666666666666444455555554 6666666666665555566666666666666
Q ss_pred cCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCC-cccccCChhhhCCCCccEEEccCCcCCCC
Q 004704 347 ENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN-TFSGRIPHQINEHSNLRFLLLGGNHLQGP 424 (735)
Q Consensus 347 ~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 424 (735)
+|++++..+..+ .+++|++|++++|.+....+..|..+++|+.|++++| .+....+..|..+++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 666665554444 5666666666666666555555666666666666663 333233335556666666666666665 3
Q ss_pred CchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhh
Q 004704 425 IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSA 504 (735)
Q Consensus 425 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (735)
+| .+..+++|+.|++++|++++..|..|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------------------------------------------ 230 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL------------------------------------------------ 230 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTC------------------------------------------------
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccC------------------------------------------------
Confidence 33 25556666666666666655444443322
Q ss_pred hhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCC
Q 004704 505 LEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMI 584 (735)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 584 (735)
++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|
T Consensus 231 -----------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 231 -----------------------------MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp -----------------------------TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred -----------------------------ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 345556666666665555566666666666666666665555556666666
Q ss_pred CEEeCCCCccc
Q 004704 585 ESLDISYNKLT 595 (735)
Q Consensus 585 ~~LdLs~N~l~ 595 (735)
+.|+|++|.+.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 66666666554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.8e-27 Score=256.00 Aligned_cols=252 Identities=23% Similarity=0.262 Sum_probs=219.6
Q ss_pred cCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCC
Q 004704 315 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 393 (735)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 393 (735)
....++.++..++ .+|..+. +++++|++++|++++..+..+ .+++|+.|++++|.+++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3678888888888 5666554 689999999999999877777 89999999999999999988999999999999999
Q ss_pred CCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCc-hhhcccccccccCCccCCCCC
Q 004704 394 DNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPP-CFANVLSWRVGSDDVLNGSKL 472 (735)
Q Consensus 394 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~ 472 (735)
+|++++..+..+..+++|++|+|++|.+.+..+..|.++++|+.|++++|+..+.++. .+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~------------------ 193 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE------------------ 193 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT------------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc------------------
Confidence 9999977777899999999999999999977777899999999999999654333332 222
Q ss_pred CCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCc
Q 004704 473 NSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPS 552 (735)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~ 552 (735)
.+++|+.|+|++|++++ +|
T Consensus 194 -----------------------------------------------------------~l~~L~~L~L~~n~l~~-~~- 212 (452)
T 3zyi_A 194 -----------------------------------------------------------GLFNLKYLNLGMCNIKD-MP- 212 (452)
T ss_dssp -----------------------------------------------------------TCTTCCEEECTTSCCSS-CC-
T ss_pred -----------------------------------------------------------CCCCCCEEECCCCcccc-cc-
Confidence 24678999999999994 55
Q ss_pred cccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCCC-CCCCcc
Q 004704 553 DIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPDK-GQFATF 631 (735)
Q Consensus 553 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~ 631 (735)
.+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+..+++|+.|++++|++++..+.. ..+..+
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 5889999999999999999999999999999999999999999999999999999999999999999777653 456677
Q ss_pred CCcccCCCCCCCCcccc
Q 004704 632 DESSYRGNPSLCAWLIQ 648 (735)
Q Consensus 632 ~~~~~~gN~~lc~~~~~ 648 (735)
....+.+||+.|+|.+.
T Consensus 293 ~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 293 VELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CEEECCSSCEECSTTTH
T ss_pred CEEEccCCCcCCCCCch
Confidence 88889999999998643
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.5e-27 Score=243.24 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=48.3
Q ss_pred ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704 535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 614 (735)
Q Consensus 535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 614 (735)
+|+.|++++|++++..+..+..+++|+.|++++|.+++..|..|+++++|+.|++++|++++..+..+..+++|++|+++
T Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 34445555555553333445555555555555555555555555555555555555555555444445555555555555
Q ss_pred cCcCcccCC
Q 004704 615 YNNLSGRTP 623 (735)
Q Consensus 615 ~N~l~~~~p 623 (735)
+|++++.++
T Consensus 234 ~N~~~c~~~ 242 (285)
T 1ozn_A 234 DNPWVCDCR 242 (285)
T ss_dssp SSCEECSGG
T ss_pred CCCccCCCC
Confidence 555555444
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.3e-27 Score=245.09 Aligned_cols=235 Identities=19% Similarity=0.243 Sum_probs=172.9
Q ss_pred CCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEE
Q 004704 288 STSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLS 367 (735)
Q Consensus 288 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 367 (735)
.+.++.|++++|.++ .+|..++.++. |++|++++|.++ .+|..+..+++|++|++++|.++..+.....+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTT-CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCC-CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 356777777777776 66776776665 777777777777 666666667777777777766663222222555566666
Q ss_pred ccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC
Q 004704 368 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 447 (735)
Q Consensus 368 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 447 (735)
+++|.+.+.+|..+.. . ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 6555555555443322 0 11122445788888888888888 677788888888888888888874
Q ss_pred CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecccccc
Q 004704 448 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI 527 (735)
Q Consensus 448 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 527 (735)
+|..+..
T Consensus 221 -l~~~l~~------------------------------------------------------------------------ 227 (328)
T 4fcg_A 221 -LGPAIHH------------------------------------------------------------------------ 227 (328)
T ss_dssp -CCGGGGG------------------------------------------------------------------------
T ss_pred -Cchhhcc------------------------------------------------------------------------
Confidence 4444433
Q ss_pred ccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCC
Q 004704 528 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNF 607 (735)
Q Consensus 528 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 607 (735)
+++|+.|++++|++.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|++|||++|++.+.+|..+..+++
T Consensus 228 -----l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp -----CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred -----CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 256778889988888888988999999999999999998899999999999999999999999999999999999
Q ss_pred CCeEEcccCcCc
Q 004704 608 LSIFNVSYNNLS 619 (735)
Q Consensus 608 L~~L~ls~N~l~ 619 (735)
|+.++++.|.+.
T Consensus 303 L~~l~l~~~~~~ 314 (328)
T 4fcg_A 303 NCIILVPPHLQA 314 (328)
T ss_dssp TCEEECCGGGSC
T ss_pred ceEEeCCHHHHH
Confidence 999999877654
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.6e-27 Score=243.05 Aligned_cols=252 Identities=21% Similarity=0.250 Sum_probs=202.1
Q ss_pred CCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEcc
Q 004704 291 LQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQ 369 (735)
Q Consensus 291 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~ 369 (735)
-++++.+++.++ .+|..+ +.++++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 367888888887 667643 3349999999999987777888899999999999999888766666 78899999999
Q ss_pred CCc-ccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCC
Q 004704 370 KNA-LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS 448 (735)
Q Consensus 370 ~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 448 (735)
+|. +....+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 997 7777688888899999999999999877788888899999999999999877777788899999999999988754
Q ss_pred CCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccc
Q 004704 449 IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIY 528 (735)
Q Consensus 449 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 528 (735)
.+..+..
T Consensus 169 ~~~~~~~------------------------------------------------------------------------- 175 (285)
T 1ozn_A 169 PERAFRG------------------------------------------------------------------------- 175 (285)
T ss_dssp CTTTTTT-------------------------------------------------------------------------
T ss_pred CHHHhcC-------------------------------------------------------------------------
Confidence 4443433
Q ss_pred cCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCC
Q 004704 529 NGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFL 608 (735)
Q Consensus 529 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 608 (735)
+++|+.|++++|++++..|..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. .-...+
T Consensus 176 ----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l 250 (285)
T 1ozn_A 176 ----LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL 250 (285)
T ss_dssp ----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred ----ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH
Confidence 356788999999998888888999999999999999999877777899999999999999888644321 112234
Q ss_pred CeEEcccCcCcccCCC
Q 004704 609 SIFNVSYNNLSGRTPD 624 (735)
Q Consensus 609 ~~L~ls~N~l~~~~p~ 624 (735)
+.+..+.|.+.+..|.
T Consensus 251 ~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHCCSEECCCBEEESG
T ss_pred HhcccccCccccCCch
Confidence 4555677788777775
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.4e-27 Score=243.52 Aligned_cols=236 Identities=22% Similarity=0.254 Sum_probs=206.0
Q ss_pred CCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCE
Q 004704 263 NLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRI 342 (735)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 342 (735)
..++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.++. |++|++++|.++ .+|..+..+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~-L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG-LETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTT-CSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCC-CCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 3578999999999998 78888889999999999999999 89999999987 999999999999 78999999999999
Q ss_pred EEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCC
Q 004704 343 LDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQ 422 (735)
Q Consensus 343 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 422 (735)
|++++|++.+.++..+.- . ..++.+..+++|++|++++|+++ .+|..++.+++|++|++++|.++
T Consensus 155 L~L~~n~~~~~~p~~~~~-----~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAS-----T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEEETTCCCCCSCSEE-----E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred EECCCCCCccccChhHhh-----c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 999999888777664411 1 12345677888999999999988 78888999999999999999998
Q ss_pred CCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhh
Q 004704 423 GPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWL 502 (735)
Q Consensus 423 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (735)
+ +|..+..+++|+.|++++|++.+.+|..+..+
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l---------------------------------------------- 252 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR---------------------------------------------- 252 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC----------------------------------------------
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCC----------------------------------------------
Confidence 5 66678999999999999999988888766543
Q ss_pred hhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcC
Q 004704 503 SALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLK 582 (735)
Q Consensus 503 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 582 (735)
++|+.|++++|++.+.+|..++.+++|+.|+|++|.+.+.+|..+++++
T Consensus 253 -------------------------------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 253 -------------------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp -------------------------------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred -------------------------------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 5788899999999999999999999999999999999999999999999
Q ss_pred CCCEEeCCCCccc
Q 004704 583 MIESLDISYNKLT 595 (735)
Q Consensus 583 ~L~~LdLs~N~l~ 595 (735)
+|+.+++..|.+.
T Consensus 302 ~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 302 ANCIILVPPHLQA 314 (328)
T ss_dssp TTCEEECCGGGSC
T ss_pred CceEEeCCHHHHH
Confidence 9999999988766
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.8e-27 Score=243.01 Aligned_cols=279 Identities=23% Similarity=0.254 Sum_probs=183.3
Q ss_pred CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccC--ccchhhhhCCCCCCEEE
Q 004704 170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSG--GLSQSVVTGCFSLELLD 247 (735)
Q Consensus 170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~ 247 (735)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.++. ..+..+ ..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEE
Confidence 46677777776 6666543 477788888887774333346777888888888887762 123443 3577888888
Q ss_pred ccCCCCCCcCcccccCCCCCCEEEccccccCcccc-ccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcC
Q 004704 248 LSNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIK-DGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326 (735)
Q Consensus 248 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l 326 (735)
+++|.+.. ++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..++. |++|++++|.+
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTTCEE
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCCCcc
Confidence 88887763 55567777888888888887775443 45677777777777777777666666666665 77777777777
Q ss_pred CC-CCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChh
Q 004704 327 EG-NVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQ 404 (735)
Q Consensus 327 ~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 404 (735)
.+ ..|..+..+++|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 65 466677777777777777777776655544 6677777777777776665556666777777777777777666666
Q ss_pred hhCCC-CccEEEccCCcCCCCCc--hhhhcCCCCCEEECcCCcCCCCCCchhhc
Q 004704 405 INEHS-NLRFLLLGGNHLQGPIP--DQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455 (735)
Q Consensus 405 ~~~l~-~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 455 (735)
+..++ +|++|++++|++.+..+ .....+...+.+.+..+.+....|..+.+
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 66663 67777777777765321 11122223333444555555555555544
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.1e-29 Score=287.90 Aligned_cols=425 Identities=14% Similarity=0.072 Sum_probs=253.7
Q ss_pred hhhCCCCCCEEEccCCcCcccC---c-----------hHHHhCCCCCcEEECcCCcCcccCcCCcC-CCCCcCEEEccCC
Q 004704 113 FLLHQYHLKYLDLSHNKLVGNF---P-----------TWLLRNNPKLEVLLLKNNSFSGILQLPKA-KHDFLHHLDISCN 177 (735)
Q Consensus 113 ~l~~l~~L~~L~Ls~n~l~~~~---p-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n 177 (735)
.+..+++|++|+++++.....+ | ..+...+++|++|++++|.+++.....+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3455666666666665421111 0 12334667777777777776655444443 4677777777777
Q ss_pred -cCCCcCChhHHHhcccCcEEECcCCcCCCCCCccc----CCCCCCCEEECCCcc--ccCccchhhhhCCCCCCEEEccC
Q 004704 178 -NFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA----GEMKELSLLDLSRNY--FSGGLSQSVVTGCFSLELLDLSN 250 (735)
Q Consensus 178 -~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~ 250 (735)
.+++.....+...+++|++|++++|.+++..+..+ ..+++|++|++++|. +.......+...+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 44422233444447788888888887665433333 366788888888886 32222223344578889999888
Q ss_pred CCCCCcCcccccCCCCCCEEEcccc-------ccCccccccccCCCCCCEE-EeeCCccCCCCCchhhhhcccCcEEEcC
Q 004704 251 NNFEGQFFSEYMNLTRLRHLYFENN-------NFSGKIKDGLLSSTSLQVL-DISNNMLSGHIPHWMGNFSSELEILSMS 322 (735)
Q Consensus 251 n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~l~~~~~L~~L-~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 322 (735)
|...+.++..+..+++|+.|++..+ .+. .++..+..+++|+.| .+.+... +.++..+..++. |++|+++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~-L~~L~L~ 297 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSR-LTTLNLS 297 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTT-CCEEECT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCC-CCEEEcc
Confidence 8333336667778888888885544 333 244467888888888 3433322 245555555665 9999999
Q ss_pred CCcCCCCC-CccCCCCCCCCEEEcccCCCCcc-CCCcc-CCCCccEEEccC---------CcccccCccccc-CCCCCcE
Q 004704 323 KNHLEGNV-PVQLNNLERLRILDISENRLSGP-IASSL-NLSSVEHLSLQK---------NALNGLIPGELF-RSCKLVT 389 (735)
Q Consensus 323 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~~-~l~~L~~L~l~~---------n~l~~~~~~~~~-~~~~L~~ 389 (735)
+|.+++.. ...+..+++|++|++++| +... .+... .+++|+.|++.+ +.+++.....+. .+++|+.
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 88866432 233567788889988887 3321 11122 477888888843 344432222222 3677888
Q ss_pred EeCCCCcccccCChhhh-CCCCccEEEcc--C----CcCCCC-----CchhhhcCCCCCEEECcCCcCCCCCCchhhccc
Q 004704 390 LNLRDNTFSGRIPHQIN-EHSNLRFLLLG--G----NHLQGP-----IPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVL 457 (735)
Q Consensus 390 L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 457 (735)
|+++.|.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..+..
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-- 453 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-- 453 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--
Confidence 87777777765555554 47778888887 3 444421 122256677777777765 443221111111
Q ss_pred ccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccc
Q 004704 458 SWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVT 537 (735)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 537 (735)
.+++|+
T Consensus 454 --------------------------------------------------------------------------~~~~L~ 459 (594)
T 2p1m_B 454 --------------------------------------------------------------------------YAKKME 459 (594)
T ss_dssp --------------------------------------------------------------------------HCTTCC
T ss_pred --------------------------------------------------------------------------hchhcc
Confidence 125677
Q ss_pred eEECCCCcccCCCCccc-cccccCCeEeCCCCcCcccCcc-cccCcCCCCEEeCCCCcccccCCccc-cCCCCCCeEEcc
Q 004704 538 GLDLSCNQLTGEIPSDI-GQLQAILALNLSNNSLSGSIPE-SFSNLKMIESLDISYNKLTGQIPPQL-TALNFLSIFNVS 614 (735)
Q Consensus 538 ~LdLs~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~LdLs~N~l~~~~p~~l-~~l~~L~~L~ls 614 (735)
.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...+.
T Consensus 460 ~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 78888777765444444 5577788888888877654443 34457778888888877754433334 445666665555
Q ss_pred cCcC
Q 004704 615 YNNL 618 (735)
Q Consensus 615 ~N~l 618 (735)
.+.-
T Consensus 540 ~~~~ 543 (594)
T 2p1m_B 540 ERGA 543 (594)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 5443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-28 Score=253.74 Aligned_cols=262 Identities=20% Similarity=0.220 Sum_probs=178.7
Q ss_pred EccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCC
Q 004704 271 YFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRL 350 (735)
Q Consensus 271 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 350 (735)
+++.+.+.......+..+++|++|++++|.+++..|..+..++. |+.|++++|++++..+ +..+++|++|++++|++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 33444443333333344455666666666665444445555554 6666666666654333 56666666666666666
Q ss_pred CccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhh-
Q 004704 351 SGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQL- 429 (735)
Q Consensus 351 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~- 429 (735)
++.. ..++|+.|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+
T Consensus 93 ~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 93 QELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 5433 2366777777777776654432 4678888888888887667777778888888888888887666665
Q ss_pred hcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhh
Q 004704 430 CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRA 509 (735)
Q Consensus 430 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 509 (735)
..+++|+.|++++|++++. |..
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-~~~--------------------------------------------------------- 187 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-KGQ--------------------------------------------------------- 187 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-ECC---------------------------------------------------------
T ss_pred hccCcCCEEECCCCcCccc-ccc---------------------------------------------------------
Confidence 3678888888888887632 110
Q ss_pred ccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeC
Q 004704 510 AIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDI 589 (735)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL 589 (735)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++
T Consensus 188 ---------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 188 ---------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp ---------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred ---------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence 113677888888888884 5556888888999999999888 46777888889999999
Q ss_pred CCCccc-ccCCccccCCCCCCeEEcc-cCcCcccCC
Q 004704 590 SYNKLT-GQIPPQLTALNFLSIFNVS-YNNLSGRTP 623 (735)
Q Consensus 590 s~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~~~~p 623 (735)
++|+++ +.+|..+..++.|+.++++ .+.++|..|
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 999888 7788888888888888888 445665544
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4e-28 Score=250.66 Aligned_cols=205 Identities=19% Similarity=0.228 Sum_probs=119.5
Q ss_pred CCCCCCEEEcccCCCCccCCCc---cCCCCccEEEccCCcccccCcccccCC-----CCCcEEeCCCCcccccCChhhhC
Q 004704 336 NLERLRILDISENRLSGPIASS---LNLSSVEHLSLQKNALNGLIPGELFRS-----CKLVTLNLRDNTFSGRIPHQINE 407 (735)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~ 407 (735)
++++|++|++++|++++..+.. ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 3445555555555554433332 1445555555555555544 4444443 56666666666666555566666
Q ss_pred CCCccEEEccCCcCCCC--Cchhh--hcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhc
Q 004704 408 HSNLRFLLLGGNHLQGP--IPDQL--CQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEF 483 (735)
Q Consensus 408 l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 483 (735)
+++|++|++++|++.+. .+..+ ..+++|++|++++|++++. +.....+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~--------------------------- 223 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGVCSAL--------------------------- 223 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHHHHHH---------------------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHHHHHH---------------------------
Confidence 66666666666665543 22233 5666677777777666521 1100000
Q ss_pred ccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCC-ccccccccCCe
Q 004704 484 GSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAILA 562 (735)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~ 562 (735)
...+++|+.||+++|++++.+| ..+..+++|++
T Consensus 224 ----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 224 ----------------------------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp ----------------------------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred ----------------------------------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 0012456667777777776554 34555677777
Q ss_pred EeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704 563 LNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 563 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 620 (735)
|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777777 5666655 7777777777777755 55 7777777777777777764
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3e-25 Score=247.63 Aligned_cols=80 Identities=33% Similarity=0.348 Sum_probs=43.8
Q ss_pred ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcc
Q 004704 535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVS 614 (735)
Q Consensus 535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls 614 (735)
+|+.|++++|++++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 34555555555553 44 23355555666666555 3333 4455566666666655 455555556666666666
Q ss_pred cCcCcccCC
Q 004704 615 YNNLSGRTP 623 (735)
Q Consensus 615 ~N~l~~~~p 623 (735)
+|++++.+|
T Consensus 293 ~N~l~~~~~ 301 (622)
T 3g06_A 293 GNPLSERTL 301 (622)
T ss_dssp SCCCCHHHH
T ss_pred CCCCCCcCH
Confidence 666555544
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.5e-29 Score=284.99 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=115.6
Q ss_pred cccCCCCCCCEEeCCCCcCCC---Cc------------chhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccc
Q 004704 14 TCLKNLTRLKILDISSNQLNG---SL------------PSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 78 (735)
Q Consensus 14 ~~~~~l~~L~~L~Ls~n~i~~---~~------------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 78 (735)
..+.++++|++|+|+++.... .. +.....+++|++|++++|.+++..+......+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 345567778888887764211 11 122346777777777777766544422223577777777776
Q ss_pred ccccccc-cCCCCCCCCCeeEEEeeCCCCCCCCchhhh----CCCCCCEEEccCCc--CcccCchHHHhCCCCCcEEECc
Q 004704 79 RNNTLHV-KTENWLPTSQLIVLGLTKCNLNGSYPDFLL----HQYHLKYLDLSHNK--LVGNFPTWLLRNNPKLEVLLLK 151 (735)
Q Consensus 79 ~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----~l~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~L~ 151 (735)
|...... .......+++|++|++++|.+++..+..+. .+++|++|++++|. +.......+...+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 6322221 111122456667777766665554443333 45566666666664 2211112223345666666666
Q ss_pred CC-cCcccCcCCcCCCCCcCEEEccCCc-------CCCcCChhHHHhcccCcEE-ECcCCcCCCCCCcccCCCCCCCEEE
Q 004704 152 NN-SFSGILQLPKAKHDFLHHLDISCNN-------FRGKLPHNMGVILQKLMYM-DISKNCFEGNIPYSAGEMKELSLLD 222 (735)
Q Consensus 152 ~n-~l~~~~~~~~~~~~~L~~L~Ls~n~-------l~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~ 222 (735)
+| .+.+ .+..+..+++|++|+++.+. +. .++..+ ..+++|+.+ .+.+... +.++..+..+++|++|+
T Consensus 220 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~ 295 (594)
T 2p1m_B 220 RAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLN 295 (594)
T ss_dssp TTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEE
T ss_pred CCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEE
Confidence 66 2222 34444555666666654332 11 122222 224555555 2222211 12333333445555555
Q ss_pred CCCccccCccchhhhhCCCCCCEEEccCC
Q 004704 223 LSRNYFSGGLSQSVVTGCFSLELLDLSNN 251 (735)
Q Consensus 223 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 251 (735)
+++|.+++.....+...+++|++|++++|
T Consensus 296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred ccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 55555443333333344555555555554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=8.2e-28 Score=248.34 Aligned_cols=248 Identities=19% Similarity=0.232 Sum_probs=184.8
Q ss_pred cCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccC-CCCCchhh-------hhcccCcEEEcCCCcCCCCCCcc
Q 004704 262 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLS-GHIPHWMG-------NFSSELEILSMSKNHLEGNVPVQ 333 (735)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~p~~~~-------~~~~~L~~L~l~~n~l~~~~~~~ 333 (735)
...++|+.|++++|.+ .+|..+... |+.|++++|.++ ..+|..+. .++. |++|++++|++++..|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhHHH
Confidence 3345566666666666 344444322 666666666663 34454443 4544 777777777777777766
Q ss_pred C--CCCCCCCEEEcccCCCCccCCCcc-CC-----CCccEEEccCCcccccCcccccCCCCCcEEeCCCCccccc--CCh
Q 004704 334 L--NNLERLRILDISENRLSGPIASSL-NL-----SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR--IPH 403 (735)
Q Consensus 334 l--~~l~~L~~L~L~~n~l~~~~~~~~-~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~ 403 (735)
+ ..+++|++|++++|++++. +..+ .+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7788888888888888776 4433 44 8899999999999888888889999999999999998765 334
Q ss_pred hh--hCCCCccEEEccCCcCCCC--C-chhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704 404 QI--NEHSNLRFLLLGGNHLQGP--I-PDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478 (735)
Q Consensus 404 ~~--~~l~~L~~L~L~~n~l~~~--~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 478 (735)
.+ ..+++|++|++++|.+++. + ...+..+++|+.|++++|++++..|....
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------ 249 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC------------------------ 249 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC------------------------
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh------------------------
Confidence 44 7889999999999999832 2 23456789999999999999876642111
Q ss_pred hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704 479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 558 (735)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 558 (735)
..+++|+.|+|++|+++ .+|..+. +
T Consensus 250 ----------------------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 250 ----------------------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp ----------------------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ----------------------------------------------------hhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 12367889999999999 8888877 8
Q ss_pred cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccc
Q 004704 559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596 (735)
Q Consensus 559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 596 (735)
+|++|+|++|++++. |. +..+++|++|+|++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999999999966 66 9999999999999999985
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-27 Score=245.51 Aligned_cols=265 Identities=19% Similarity=0.212 Sum_probs=180.7
Q ss_pred CEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEcc
Q 004704 170 HHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLS 249 (735)
Q Consensus 170 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 249 (735)
+..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 13 ~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls 88 (317)
T 3o53_A 13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN 88 (317)
T ss_dssp EEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECC
T ss_pred eEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECc
Confidence 34445555544 3444444445667777777777765555666777777777777777664333 4566777777777
Q ss_pred CCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCC
Q 004704 250 NNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGN 329 (735)
Q Consensus 250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~ 329 (735)
+|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..++. |++|++++|.+++.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCcc
Confidence 77665322 2367777777777776544433 466777778777777555556666665 88888888877766
Q ss_pred CCccC-CCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCC
Q 004704 330 VPVQL-NNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEH 408 (735)
Q Consensus 330 ~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 408 (735)
.+..+ ..+++|++|++++|.+++.. ....+++|++|++++|.+++..+ .+..+++|+.|++++|+++ .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcC
Confidence 56555 35777888888888877653 23357788888888888876544 4777888888888888887 567777888
Q ss_pred CCccEEEccCCcCC-CCCchhhhcCCCCCEEECcCC-cCCCCCC
Q 004704 409 SNLRFLLLGGNHLQ-GPIPDQLCQLQKLAMMDLSRN-KFSGSIP 450 (735)
Q Consensus 409 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p 450 (735)
++|+.|++++|++. +.++..+..+++|+.++++++ .++|..|
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 88888888888887 667777888888888888744 4554444
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-24 Score=243.11 Aligned_cols=264 Identities=25% Similarity=0.287 Sum_probs=122.8
Q ss_pred eeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEcc
Q 004704 96 LIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDIS 175 (735)
Q Consensus 96 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 175 (735)
+++|++++|+++ .+|..+. ++|++|++++|+++ .+|. .+++|++|++++|+++++.. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence 445555555554 3333332 45555555555555 4443 34555555555555554322 34555555555
Q ss_pred CCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCC
Q 004704 176 CNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG 255 (735)
Q Consensus 176 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 255 (735)
+|.++ .+|. .+++|+.|++++|.+++ +|.. +++|++|++++|.++ .+|. ...+|+.|++++|.+++
T Consensus 110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC
Confidence 55555 3333 13455555555555542 3332 245555555555554 2322 23445555555555543
Q ss_pred cCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCC
Q 004704 256 QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLN 335 (735)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 335 (735)
+| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|..+ .+|+.|++++|++++ +| .
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~----~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP----SGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC----TTCCEEECCSSCCSC-CC---C
T ss_pred -Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC----CCCCEEEccCCccCc-CC---C
Confidence 22 223445555555555442 2221 244455555555444 333211 124444444444442 22 2
Q ss_pred CCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704 336 NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 415 (735)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 415 (735)
. +++|+.|++++|.++. +|. .+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 239 ~-----------------------l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 239 L-----------------------PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp C-----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred C-----------------------CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 2 3444444444444442 222 3344555555555555 4455555555555555
Q ss_pred ccCCcCCCCCchhhh
Q 004704 416 LGGNHLQGPIPDQLC 430 (735)
Q Consensus 416 L~~n~l~~~~~~~~~ 430 (735)
|++|++.+..|..+.
T Consensus 291 L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 291 LEGNPLSERTLQALR 305 (622)
T ss_dssp CCSCCCCHHHHHHHH
T ss_pred ecCCCCCCcCHHHHH
Confidence 555555544444443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-26 Score=252.07 Aligned_cols=215 Identities=20% Similarity=0.207 Sum_probs=137.6
Q ss_pred CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCC
Q 004704 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 395 (735)
Q Consensus 316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 395 (735)
|+.|++++|.+++..|..|..+++|++|++++|.+++.++ ...+++|++|++++|.+++..+ .++|++|++++|
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N 109 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN 109 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCC
Confidence 6666666666666555666666666666666666665444 3356666666666666664322 256777777777
Q ss_pred cccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCc
Q 004704 396 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 475 (735)
Q Consensus 396 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 475 (735)
.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 110 ~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-------------------- 166 (487)
T 3oja_A 110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-------------------- 166 (487)
T ss_dssp CCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--------------------
T ss_pred cCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--------------------
Confidence 77654433 2456777777777777666666677777777777777776655544321
Q ss_pred ccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCcccc
Q 004704 476 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG 555 (735)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 555 (735)
.+++|+.|+|++|.+++. |. +.
T Consensus 167 --------------------------------------------------------~l~~L~~L~Ls~N~l~~~-~~-~~ 188 (487)
T 3oja_A 167 --------------------------------------------------------SSDTLEHLNLQYNFIYDV-KG-QV 188 (487)
T ss_dssp --------------------------------------------------------GTTTCCEEECTTSCCCEE-EC-CC
T ss_pred --------------------------------------------------------hCCcccEEecCCCccccc-cc-cc
Confidence 124566677777777644 22 33
Q ss_pred ccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCc
Q 004704 556 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLS 619 (735)
Q Consensus 556 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 619 (735)
.+++|+.|+|++|.+++.+| .|..+++|+.|||++|++++ +|..+..+++|+.|++++|++.
T Consensus 189 ~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 46777777777777775444 37777777777777777774 5666777777777777777776
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1e-26 Score=254.74 Aligned_cols=235 Identities=21% Similarity=0.231 Sum_probs=189.0
Q ss_pred CCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEc
Q 004704 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSL 368 (735)
Q Consensus 289 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l 368 (735)
++|++|++++|.+++..|..+..++. |+.|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 46777777777777655666666665 7777777777765544 7777788888888887765442 377888888
Q ss_pred cCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhh-cCCCCCEEECcCCcCCC
Q 004704 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLC-QLQKLAMMDLSRNKFSG 447 (735)
Q Consensus 369 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 447 (735)
++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888876554 357899999999999988888899999999999999999988888776 78999999999999875
Q ss_pred CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecccccc
Q 004704 448 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI 527 (735)
Q Consensus 448 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 527 (735)
..+.
T Consensus 184 ~~~~---------------------------------------------------------------------------- 187 (487)
T 3oja_A 184 VKGQ---------------------------------------------------------------------------- 187 (487)
T ss_dssp EECC----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 4111
Q ss_pred ccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccc-ccCCccccCCC
Q 004704 528 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT-GQIPPQLTALN 606 (735)
Q Consensus 528 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l~ 606 (735)
..+++|+.|+|++|.+++ +|..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++
T Consensus 188 ---~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 188 ---VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp ---CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred ---ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 123678899999999996 55569999999999999999995 7778999999999999999998 77888888888
Q ss_pred CCCeEEcc
Q 004704 607 FLSIFNVS 614 (735)
Q Consensus 607 ~L~~L~ls 614 (735)
.|+.++++
T Consensus 263 ~L~~l~~~ 270 (487)
T 3oja_A 263 RVQTVAKQ 270 (487)
T ss_dssp HHHHHHHH
T ss_pred CCcEEecc
Confidence 88888876
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1e-24 Score=221.18 Aligned_cols=208 Identities=21% Similarity=0.244 Sum_probs=127.7
Q ss_pred CCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEcc
Q 004704 339 RLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLG 417 (735)
Q Consensus 339 ~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 417 (735)
+|++|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444333222 44444444554554444444455555566666666666655555556666666666666
Q ss_pred CCcCCCCCchhhhcCCCCCEEECcCCcCCCC-CCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704 418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGS-IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 496 (735)
Q Consensus 418 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (735)
+|.+.+..+..+..+++|++|++++|++++. +|..+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l---------------------------------------- 148 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---------------------------------------- 148 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------------------------------
Confidence 6666654444566666666666666666542 34433322
Q ss_pred chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCC----eEeCCCCcCcc
Q 004704 497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAIL----ALNLSNNSLSG 572 (735)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~ 572 (735)
++|+.|++++|++++..+..+..+.+|+ .|++++|.+++
T Consensus 149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 4455666666666655555666666666 78888888886
Q ss_pred cCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 573 SIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 573 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
..+..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 65555544 4788888888888877666778888899999988888877764
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.5e-23 Score=211.65 Aligned_cols=205 Identities=25% Similarity=0.287 Sum_probs=146.1
Q ss_pred CCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC
Q 004704 340 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419 (735)
Q Consensus 340 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (735)
.+.++++++.++..+... .++++.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 344555555544322211 134566666666666555556667777777777777777555555667777777777777
Q ss_pred cCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchh
Q 004704 420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 499 (735)
Q Consensus 420 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (735)
.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------- 131 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-------------------------------------------- 131 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------------------------------------------
Confidence 777666666777778888888888777555444433
Q ss_pred hhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCccccc
Q 004704 500 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 579 (735)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 579 (735)
+++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+..|.
T Consensus 132 ---------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (270)
T 2o6q_A 132 ---------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178 (270)
T ss_dssp ---------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ---------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence 25677788888888865556688888999999999999877777788
Q ss_pred CcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCC
Q 004704 580 NLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623 (735)
Q Consensus 580 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 623 (735)
++++|++|+|++|++++..+..+..+++|+.|++++|++.+.++
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 89999999999999987777778888999999998888877655
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.7e-24 Score=213.92 Aligned_cols=227 Identities=20% Similarity=0.214 Sum_probs=182.3
Q ss_pred EEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCc
Q 004704 294 LDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNA 372 (735)
Q Consensus 294 L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~ 372 (735)
++..+..+. .+|..+ +.++++|++++|++++..+..|.++++|++|++++|++.+..+..+ .+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444455554 566544 2348888888888887777788888888888888888887776555 78889999999999
Q ss_pred ccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCC-CchhhhcCCCCCEEECcCCcCCCCCCc
Q 004704 373 LNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGP-IPDQLCQLQKLAMMDLSRNKFSGSIPP 451 (735)
Q Consensus 373 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 451 (735)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8888888889999999999999999877776789999999999999999864 588999999999999999999876666
Q ss_pred hhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCC
Q 004704 452 CFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGS 531 (735)
Q Consensus 452 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (735)
.+..+..+
T Consensus 168 ~~~~l~~L------------------------------------------------------------------------ 175 (276)
T 2z62_A 168 DLRVLHQM------------------------------------------------------------------------ 175 (276)
T ss_dssp GGHHHHTC------------------------------------------------------------------------
T ss_pred Hhhhhhhc------------------------------------------------------------------------
Confidence 65544211
Q ss_pred cccccc-eEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704 532 NVNRVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 532 ~l~~L~-~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 599 (735)
+.+. .|++++|++++..+..+. ..+|+.|+|++|++++..+..|+++++|+.|+|++|++++..|
T Consensus 176 --~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 176 --PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp --TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred --cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 2222 699999999965555444 4589999999999998777788999999999999999996543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.3e-23 Score=213.75 Aligned_cols=205 Identities=20% Similarity=0.191 Sum_probs=137.1
Q ss_pred CCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccE
Q 004704 334 LNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRF 413 (735)
Q Consensus 334 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 413 (735)
+.+++++++++++++.++..++.. .+.++.|++++|.+++..+..+..+++|+.|++++|.+++..+. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 456677888888888777544433 25677777777777776667777777777777777777643322 56677777
Q ss_pred EEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCc
Q 004704 414 LLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSN 493 (735)
Q Consensus 414 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (735)
|++++|.++ .+|..+..+++|+.|++++|++++..|..|..
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 777777776 56666667777777777777776544444433
Q ss_pred cccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCccc
Q 004704 494 TMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS 573 (735)
Q Consensus 494 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 573 (735)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus 123 ---------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 123 ---------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp ---------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred ---------------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 24566677777777755555566677777777777777755
Q ss_pred CcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCccc
Q 004704 574 IPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGR 621 (735)
Q Consensus 574 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 621 (735)
.+..|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.+.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 5555666777777777777776 5666666666677777766666543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.8e-23 Score=208.63 Aligned_cols=206 Identities=20% Similarity=0.254 Sum_probs=179.2
Q ss_pred CCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEEC
Q 004704 361 SSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDL 440 (735)
Q Consensus 361 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 440 (735)
...+.++++++.++. +|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 357899999999985 565443 68999999999999777778999999999999999999766777899999999999
Q ss_pred cCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEE
Q 004704 441 SRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFA 520 (735)
Q Consensus 441 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 520 (735)
++|++++..+..+..
T Consensus 93 ~~n~l~~~~~~~~~~----------------------------------------------------------------- 107 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQ----------------------------------------------------------------- 107 (270)
T ss_dssp CSSCCCCCCTTTTTT-----------------------------------------------------------------
T ss_pred CCCcCCcCCHhHccc-----------------------------------------------------------------
Confidence 999998655544433
Q ss_pred eccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCc
Q 004704 521 MKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPP 600 (735)
Q Consensus 521 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 600 (735)
+++|+.|++++|++++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+.
T Consensus 108 ------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 108 ------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp ------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 36788999999999988888899999999999999999987777899999999999999999988888
Q ss_pred cccCCCCCCeEEcccCcCcccCCC-CCCCCccCCcccCCCCCCCCcc
Q 004704 601 QLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWL 646 (735)
Q Consensus 601 ~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~ 646 (735)
.+..+++|++|++++|++++..+. ...+..+....+.|||+.|+|.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 899999999999999999977664 3456677888899999999875
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.1e-23 Score=211.03 Aligned_cols=206 Identities=24% Similarity=0.219 Sum_probs=158.4
Q ss_pred CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEE
Q 004704 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM 438 (735)
Q Consensus 359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 438 (735)
.++++++++++++.++. +|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|+.|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEE
Confidence 57788888888888874 444443 5788888888888877778888888888888888888853 332 678888888
Q ss_pred ECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEE
Q 004704 439 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE 518 (735)
Q Consensus 439 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 518 (735)
++++|+++ .+|..+..
T Consensus 83 ~Ls~N~l~-~l~~~~~~--------------------------------------------------------------- 98 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQT--------------------------------------------------------------- 98 (290)
T ss_dssp ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence 88888886 44443322
Q ss_pred EEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccC
Q 004704 519 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598 (735)
Q Consensus 519 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 598 (735)
+++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus 99 --------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 99 --------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp --------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred --------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 356778888888888766677888888888888888888777777888888888888888888666
Q ss_pred CccccCCCCCCeEEcccCcCcccCCCCCCCCccCCcccCCCCCCCCccc
Q 004704 599 PPQLTALNFLSIFNVSYNNLSGRTPDKGQFATFDESSYRGNPSLCAWLI 647 (735)
Q Consensus 599 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~~ 647 (735)
+..+..+++|++|++++|+++...+.......+....+.||||.|+|.+
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence 6677888888888888888885544444455566777888888887643
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.6e-23 Score=208.96 Aligned_cols=220 Identities=21% Similarity=0.227 Sum_probs=169.0
Q ss_pred CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCC
Q 004704 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDN 395 (735)
Q Consensus 316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 395 (735)
+..+++.++.+.... ....+++|+.|++++|.+.. ++....+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 444555555554332 23455667777777776653 23333677777777777777653 36778888888888888
Q ss_pred cccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCc
Q 004704 396 TFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSP 475 (735)
Q Consensus 396 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 475 (735)
.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------- 155 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-------------------- 155 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------------
Confidence 888777777888888999999999888777777888889999999999888655544433
Q ss_pred ccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCcccc
Q 004704 476 ELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIG 555 (735)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~ 555 (735)
+++|+.|++++|++++..+..++
T Consensus 156 ---------------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 156 ---------------------------------------------------------LTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred ---------------------------------------------------------CccCCEEECCCCCcCccCHHHhc
Confidence 35678899999999877777788
Q ss_pred ccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 556 QLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 556 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
.+++|+.|++++|++++..|..|+.+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|.
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 999999999999999988888889999999999999988865 44688899999999999985
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9e-23 Score=206.03 Aligned_cols=209 Identities=22% Similarity=0.262 Sum_probs=154.0
Q ss_pred hhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcE
Q 004704 310 GNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVT 389 (735)
Q Consensus 310 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 389 (735)
..+.. |+.|++++|.+.. + ..+..+++|++|++++|.+.+. +....+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~-L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNS-IDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTT-CCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccc-eeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 33444 6666666665552 1 2355566666666666666542 23336677777777777777666666777888888
Q ss_pred EeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCC
Q 004704 390 LNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNG 469 (735)
Q Consensus 390 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~ 469 (735)
|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------- 179 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-------------- 179 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------------
Confidence 888888888766677788888888888888888777777788888888888888888655544433
Q ss_pred CCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCC
Q 004704 470 SKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGE 549 (735)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ 549 (735)
+++|+.|++++|++++.
T Consensus 180 ---------------------------------------------------------------l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 180 ---------------------------------------------------------------LTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp ---------------------------------------------------------------CTTCCEEECCSSCCSCC
T ss_pred ---------------------------------------------------------------CccCCEEECCCCcCCcc
Confidence 35677889999999887
Q ss_pred CCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCC
Q 004704 550 IPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 606 (735)
Q Consensus 550 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 606 (735)
.|..++.+++|+.|++++|.+.+. +++|+.|+++.|+++|.+|..+..+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 777788999999999999988854 44688999999999999999887654
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.9e-23 Score=219.04 Aligned_cols=267 Identities=16% Similarity=0.129 Sum_probs=149.5
Q ss_pred cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcc----hhhhCCC-CCCEEeCCCCcccccCChhhhhcCCCCCeeec
Q 004704 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLP----SVISNLT-SLEYLDLSHNNFEGMFPLSSLANHSKLEGLLL 76 (735)
Q Consensus 2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 76 (735)
+|+.|.++|.+|..+...++|++|||++|.+++..+ .+|.+++ +|++|+|++|++++..+ ..+..+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~-------- 74 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQI-------- 74 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHH--------
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHH--------
Confidence 567788888777777777778888888888876666 6677777 78888888887765433 233322
Q ss_pred ccccccccccCCCCCC-CCCeeEEEeeCCCCCCCCchh----hhCC-CCCCEEEccCCcCcccCchHHHh---C-CCCCc
Q 004704 77 STRNNTLHVKTENWLP-TSQLIVLGLTKCNLNGSYPDF----LLHQ-YHLKYLDLSHNKLVGNFPTWLLR---N-NPKLE 146 (735)
Q Consensus 77 ~~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~p~~~~~---~-l~~L~ 146 (735)
+.. .++|++|+|++|.+++..+.. +..+ ++|++|++++|++++..+..+.. . .++|+
T Consensus 75 -------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 75 -------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp -------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred -------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 000 134444444555554444443 3333 67777777777776433333221 1 23555
Q ss_pred EEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcc----cCCC-CCCCEE
Q 004704 147 VLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYS----AGEM-KELSLL 221 (735)
Q Consensus 147 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L 221 (735)
+|++++|.+++.....+ +..+....++|++|++++|.+++..+.. +..+ ++|++|
T Consensus 142 ~L~Ls~N~l~~~~~~~l--------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDEL--------------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201 (362)
T ss_dssp EEECTTSCGGGSCHHHH--------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred EEEccCCcCCHHHHHHH--------------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence 55555555553221111 1111110124555555555554333322 2233 366666
Q ss_pred ECCCccccCc----cchhhhhCCCCCCEEEccCCCCCCcCc----ccccCCCCCCEEEccccccCcc-------cccccc
Q 004704 222 DLSRNYFSGG----LSQSVVTGCFSLELLDLSNNNFEGQFF----SEYMNLTRLRHLYFENNNFSGK-------IKDGLL 286 (735)
Q Consensus 222 ~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~ 286 (735)
++++|.+++. ++..+....++|++|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+.
T Consensus 202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~ 281 (362)
T 3goz_A 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST
T ss_pred ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc
Confidence 6666666531 344443334577777777777775443 3345667788888888874322 234556
Q ss_pred CCCCCCEEEeeCCccCCCCCchhh
Q 004704 287 SSTSLQVLDISNNMLSGHIPHWMG 310 (735)
Q Consensus 287 ~~~~L~~L~l~~n~l~~~~p~~~~ 310 (735)
.+++|+.|++++|.+.+..+..+.
T Consensus 282 ~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 282 NIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp TCCEEEEECTTSCBCCGGGCHHHH
T ss_pred cCCceEEEecCCCcCCCcchHHHH
Confidence 677788888888887755444333
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.4e-22 Score=200.32 Aligned_cols=183 Identities=19% Similarity=0.244 Sum_probs=148.1
Q ss_pred CccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECc
Q 004704 362 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 441 (735)
Q Consensus 362 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 441 (735)
..++++++++.++. +|..+. ++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45667777776663 344333 578888888888887777778888888888888888887777778888888888888
Q ss_pred CCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEe
Q 004704 442 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 521 (735)
Q Consensus 442 ~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (735)
+|++++..+..+..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------------------------ 105 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------------------------ 105 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcccccChhHhcc------------------------------------------------------------------
Confidence 88887555544433
Q ss_pred ccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc
Q 004704 522 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 601 (735)
Q Consensus 522 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 601 (735)
+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|||++|++++..|..
T Consensus 106 -----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 106 -----------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -----------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 356788999999998666667889999999999999999877778999999999999999999888888
Q ss_pred ccCCCCCCeEEcccCcCcccCCC
Q 004704 602 LTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 602 l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
+..+++|++|++++|++++....
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTTSTT
T ss_pred HhCCCCCCEEEeeCCceeCCccc
Confidence 99999999999999999887443
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.7e-23 Score=220.71 Aligned_cols=107 Identities=20% Similarity=0.183 Sum_probs=54.9
Q ss_pred EECCCccccCccchhhhhCCCCCCEEEccCCCCCCcCc----ccccCCC-CCCEEEccccccCccccccccCC-----CC
Q 004704 221 LDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQFF----SEYMNLT-RLRHLYFENNNFSGKIKDGLLSS-----TS 290 (735)
Q Consensus 221 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~~-----~~ 290 (735)
++++.|.+++.+|.. .....+|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 455666666444432 2334446666666666665444 4455555 56666666666554444444332 55
Q ss_pred CCEEEeeCCccCCCCCchhhhh----cccCcEEEcCCCcCCC
Q 004704 291 LQVLDISNNMLSGHIPHWMGNF----SSELEILSMSKNHLEG 328 (735)
Q Consensus 291 L~~L~l~~n~l~~~~p~~~~~~----~~~L~~L~l~~n~l~~ 328 (735)
|++|++++|.+++..+..+... +.+|++|++++|++++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 6666666665554444433332 1125555555555543
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.7e-24 Score=228.29 Aligned_cols=241 Identities=18% Similarity=0.246 Sum_probs=165.3
Q ss_pred CCchhhhhcccCcEEEcCCCcCCCC----CCccCCCCCCCCEEEcccCCCC---ccCCCc--------cCCCCccEEEcc
Q 004704 305 IPHWMGNFSSELEILSMSKNHLEGN----VPVQLNNLERLRILDISENRLS---GPIASS--------LNLSSVEHLSLQ 369 (735)
Q Consensus 305 ~p~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~---~~~~~~--------~~l~~L~~L~l~ 369 (735)
++..+..++. |+.|++++|.+.+. ++..+..+++|++|++++|.+. +.+|.. ..+++|++|+++
T Consensus 24 l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSC-CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCC-ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3344444443 55555555555433 2233555666666666664332 222211 246677777777
Q ss_pred CCcccc----cCcccccCCCCCcEEeCCCCcccccCChhhh----CC---------CCccEEEccCCcCC-CCCc---hh
Q 004704 370 KNALNG----LIPGELFRSCKLVTLNLRDNTFSGRIPHQIN----EH---------SNLRFLLLGGNHLQ-GPIP---DQ 428 (735)
Q Consensus 370 ~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~ 428 (735)
+|.+.+ .++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777765 3566777788888888888888654443333 33 78999999999887 3344 46
Q ss_pred hhcCCCCCEEECcCCcCCCC-----CCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhh
Q 004704 429 LCQLQKLAMMDLSRNKFSGS-----IPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLS 503 (735)
Q Consensus 429 ~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (735)
+..+++|+.|++++|+++.. .|..+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-------------------------------------------------- 212 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-------------------------------------------------- 212 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTG--------------------------------------------------
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHh--------------------------------------------------
Confidence 77888999999999887621 11011
Q ss_pred hhhhhhccccceeEEEEeccccccccCCcccccceEECCCCccc----CCCCccccccccCCeEeCCCCcCccc----Cc
Q 004704 504 ALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT----GEIPSDIGQLQAILALNLSNNSLSGS----IP 575 (735)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p 575 (735)
..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|
T Consensus 213 ---------------------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 213 ---------------------------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp ---------------------------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred ---------------------------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 12467888999999885 56788888999999999999999876 56
Q ss_pred cccc--CcCCCCEEeCCCCcccc----cCCccc-cCCCCCCeEEcccCcCcccCC
Q 004704 576 ESFS--NLKMIESLDISYNKLTG----QIPPQL-TALNFLSIFNVSYNNLSGRTP 623 (735)
Q Consensus 576 ~~~~--~l~~L~~LdLs~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~~p 623 (735)
..+. .+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6663 48999999999999997 488877 668999999999999987664
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.3e-23 Score=214.53 Aligned_cols=249 Identities=18% Similarity=0.228 Sum_probs=187.6
Q ss_pred CCCEEEeeCCccCCCCCchhhhh--cccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCcc-CCCcc-CCCCccE
Q 004704 290 SLQVLDISNNMLSGHIPHWMGNF--SSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGP-IASSL-NLSSVEH 365 (735)
Q Consensus 290 ~L~~L~l~~n~l~~~~p~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~-~l~~L~~ 365 (735)
.++.++++++.+. +..+..+ .. ++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+ .+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~-l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQG-VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTT-CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhcc-ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4667777777665 3444444 44 88888888888766555 45688888888888887654 44434 7888999
Q ss_pred EEccCCcccccCcccccCCCCCcEEeCCCC-ccccc-CChhhhCCCCccEEEccCC-cCCCC-CchhhhcCC-CCCEEEC
Q 004704 366 LSLQKNALNGLIPGELFRSCKLVTLNLRDN-TFSGR-IPHQINEHSNLRFLLLGGN-HLQGP-IPDQLCQLQ-KLAMMDL 440 (735)
Q Consensus 366 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L 440 (735)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999888777888888999999999999 67753 6677888999999999999 88754 577788899 9999999
Q ss_pred cCCc--CC-CCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeE
Q 004704 441 SRNK--FS-GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEI 517 (735)
Q Consensus 441 s~N~--l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 517 (735)
++|. ++ +.+|..+.
T Consensus 203 ~~~~~~~~~~~l~~~~~--------------------------------------------------------------- 219 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVR--------------------------------------------------------------- 219 (336)
T ss_dssp CSCGGGSCHHHHHHHHH---------------------------------------------------------------
T ss_pred CCCcccCCHHHHHHHHh---------------------------------------------------------------
Confidence 9994 43 12222211
Q ss_pred EEEeccccccccCCcccccceEECCCCc-ccCCCCccccccccCCeEeCCCCc-CcccCcccccCcCCCCEEeCCCCccc
Q 004704 518 EFAMKNRYEIYNGSNVNRVTGLDLSCNQ-LTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNLKMIESLDISYNKLT 595 (735)
Q Consensus 518 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~ 595 (735)
.+++|+.|++++|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++
T Consensus 220 --------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 220 --------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp --------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred --------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 23678899999999 777788889999999999999995 33222236889999999999999 33
Q ss_pred ccCCccccCCC-CCCeEEcccCcCcccCCC
Q 004704 596 GQIPPQLTALN-FLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 596 ~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~ 624 (735)
. ..+..+. .+..|++++|++++..|.
T Consensus 285 ~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 285 D---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp T---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred H---HHHHHHHhhCcceEEecccCccccCC
Confidence 2 2344442 477778999999998885
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=204.93 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=73.4
Q ss_pred CCCCEEEeeCCccCCCCCc---hhhhhcccCcEEEcCCCcCCCCCCccC--CCCCCCCEEEcccCCCCccCCCc-----c
Q 004704 289 TSLQVLDISNNMLSGHIPH---WMGNFSSELEILSMSKNHLEGNVPVQL--NNLERLRILDISENRLSGPIASS-----L 358 (735)
Q Consensus 289 ~~L~~L~l~~n~l~~~~p~---~~~~~~~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~-----~ 358 (735)
..++.+.+.++.++...-. .....+. |++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+.. .
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSR-LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSC-CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCc-eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3466677766655421100 1122334 8888888888877777776 77788888888888777543321 1
Q ss_pred CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccccc--C--ChhhhCCCCccEEEccCCcCC
Q 004704 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGR--I--PHQINEHSNLRFLLLGGNHLQ 422 (735)
Q Consensus 359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~ 422 (735)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..++.+++|++|++++|.++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 355555555555555555555555555555555555554421 1 112234444444444444443
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.4e-21 Score=193.38 Aligned_cols=79 Identities=22% Similarity=0.206 Sum_probs=44.5
Q ss_pred cccc-eEECCCCcccCCCCccccccccCCeEeCCCCc-CcccCcccccCc-CCCCEEeCCCCcccccCCccccCCCCCCe
Q 004704 534 NRVT-GLDLSCNQLTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNL-KMIESLDISYNKLTGQIPPQLTALNFLSI 610 (735)
Q Consensus 534 ~~L~-~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 610 (735)
++|+ .|++++|+++ .+|......++|+.|++++|+ +++..+..|.++ ++|+.||+++|++++ +|.. .+++|+.
T Consensus 155 ~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSE
T ss_pred hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCce
Confidence 3445 5566666555 333332222566666666663 665555566666 666666666666663 3332 4556666
Q ss_pred EEcccC
Q 004704 611 FNVSYN 616 (735)
Q Consensus 611 L~ls~N 616 (735)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 666554
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.1e-22 Score=210.54 Aligned_cols=255 Identities=19% Similarity=0.176 Sum_probs=126.7
Q ss_pred CCCEEeCCCCcCCCCcchhhhCC--CCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704 21 RLKILDISSNQLNGSLPSVISNL--TSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV 98 (735)
Q Consensus 21 ~L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 98 (735)
.++.+|+++|.+. |..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~------------------ 104 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSV------------------ 104 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCE------------------
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCC------------------
Confidence 3567777776665 4555555 6677777777776655441 3345555555555544
Q ss_pred EEeeCCCCCCC-CchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCC-cCccc-CcCCcCCCCCcCEEEcc
Q 004704 99 LGLTKCNLNGS-YPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNN-SFSGI-LQLPKAKHDFLHHLDIS 175 (735)
Q Consensus 99 L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~L~~L~Ls 175 (735)
+++. ++..+..+++|++|++++|.+++..+..+. .+++|++|++++| .+++. .+..+..+++|++|+++
T Consensus 105 -------l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 105 -------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp -------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred -------cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 4332 344444455555555555544433443332 3455555555555 34331 22233444555555555
Q ss_pred CC-cCCCc-CChhHHHhcc-cCcEEECcCC--cCC-CCCCcccCCCCCCCEEECCCcc-ccCccchhhhhCCCCCCEEEc
Q 004704 176 CN-NFRGK-LPHNMGVILQ-KLMYMDISKN--CFE-GNIPYSAGEMKELSLLDLSRNY-FSGGLSQSVVTGCFSLELLDL 248 (735)
Q Consensus 176 ~n-~l~~~-~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L 248 (735)
+| .+++. ++..+. .++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+ ..+++|++|++
T Consensus 177 ~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l 254 (336)
T 2ast_B 177 WCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSL 254 (336)
T ss_dssp CCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEEC
T ss_pred CCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeC
Confidence 55 44422 222222 245 5555555555 232 2334444455566666666655 443333332 34566666666
Q ss_pred cCCC-CCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhh
Q 004704 249 SNNN-FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGN 311 (735)
Q Consensus 249 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~ 311 (735)
++|. +.......+..+++|+.|++++| ++......+. ..++.|++++|.+++..|..++.
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 6663 22222224556666666666666 3322111111 23455556777777666665543
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.2e-23 Score=220.06 Aligned_cols=247 Identities=18% Similarity=0.260 Sum_probs=145.4
Q ss_pred cCChhHHHhcccCcEEECcCCcCCCC----CCcccCCCCCCCEEECCCcc---ccCccchhh------hhCCCCCCEEEc
Q 004704 182 KLPHNMGVILQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNY---FSGGLSQSV------VTGCFSLELLDL 248 (735)
Q Consensus 182 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~------~~~l~~L~~L~L 248 (735)
.++..+.. +++|++|++++|.+.+. ++..+..+++|++|++++|. +++.+|..+ +..+++|++|++
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34444443 56677777777766543 22335566667777666643 333334333 234455555555
Q ss_pred cCCCCCC----cCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhh---------ccc
Q 004704 249 SNNNFEG----QFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNF---------SSE 315 (735)
Q Consensus 249 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~---------~~~ 315 (735)
++|.+.+ .++..+..+++|++|++++|.++...+..+. ..+..+ +.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~- 160 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPP- 160 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCC-
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCC-
Confidence 5555544 2333444444444444444444322221111 111111 33
Q ss_pred CcEEEcCCCcCC-CCCC---ccCCCCCCCCEEEcccCCCCc-----cCC-CccCCCCccEEEccCCccc----ccCcccc
Q 004704 316 LEILSMSKNHLE-GNVP---VQLNNLERLRILDISENRLSG-----PIA-SSLNLSSVEHLSLQKNALN----GLIPGEL 381 (735)
Q Consensus 316 L~~L~l~~n~l~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~-~~~~l~~L~~L~l~~n~l~----~~~~~~~ 381 (735)
|++|++++|+++ +.++ ..+..+++|++|++++|.+.. ..+ ....+++|+.|++++|.++ +.+|..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 666666666554 2222 244455666666666666652 222 2226677777777777775 4566777
Q ss_pred cCCCCCcEEeCCCCccccc----CChhhhC--CCCccEEEccCCcCCC----CCchhh-hcCCCCCEEECcCCcCCCCCC
Q 004704 382 FRSCKLVTLNLRDNTFSGR----IPHQINE--HSNLRFLLLGGNHLQG----PIPDQL-CQLQKLAMMDLSRNKFSGSIP 450 (735)
Q Consensus 382 ~~~~~L~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~p 450 (735)
..+++|+.|++++|.+++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8888888999998888765 4566643 8889999999999886 367766 668999999999999886664
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=9.2e-21 Score=188.86 Aligned_cols=179 Identities=21% Similarity=0.236 Sum_probs=135.7
Q ss_pred CCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC
Q 004704 340 LRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419 (735)
Q Consensus 340 L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (735)
.++++++++.++..+... .+.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 344444444444332221 135666666666666666666777778888888888888777777788888888888888
Q ss_pred cCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchh
Q 004704 420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMW 499 (735)
Q Consensus 420 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (735)
.+++..+..|..+++|++|++++|++++..+..+..
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------- 129 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-------------------------------------------- 129 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc--------------------------------------------
Confidence 888777777888888888888888887554443333
Q ss_pred hhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCccccc
Q 004704 500 RWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFS 579 (735)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 579 (735)
+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..|.
T Consensus 130 ---------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 130 ---------------------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp ---------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ---------------------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence 35678899999999876666899999999999999999988888899
Q ss_pred CcCCCCEEeCCCCccccc
Q 004704 580 NLKMIESLDISYNKLTGQ 597 (735)
Q Consensus 580 ~l~~L~~LdLs~N~l~~~ 597 (735)
.+++|+.|+|++|++++.
T Consensus 177 ~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 177 RLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSCCBCTT
T ss_pred CCCCCCEEEeeCCceeCC
Confidence 999999999999999865
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=201.31 Aligned_cols=226 Identities=17% Similarity=0.159 Sum_probs=158.8
Q ss_pred CCCCEEEccCCcCccc----CchHHHhCCCCCcEEECcCCcCcccCcCCc--CCCCCcCEEEccCCcCCCcCC----hhH
Q 004704 118 YHLKYLDLSHNKLVGN----FPTWLLRNNPKLEVLLLKNNSFSGILQLPK--AKHDFLHHLDISCNNFRGKLP----HNM 187 (735)
Q Consensus 118 ~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~~----~~~ 187 (735)
..++.+++.++.++.. ++... .+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVL--AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHH--HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhc--ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3467777777666422 11111 34668888888888888877777 788888889999888886554 222
Q ss_pred HHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCc--cc-hhhhhCCCCCCEEEccCCCCCCcCc--c-cc
Q 004704 188 GVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGG--LS-QSVVTGCFSLELLDLSNNNFEGQFF--S-EY 261 (735)
Q Consensus 188 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~-~~ 261 (735)
. .+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ...+..+++|++|++++|.++.... . .+
T Consensus 142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 3 477899999999999877778888899999999999987642 22 2223467788888888888863221 1 24
Q ss_pred cCCCCCCEEEccccccCccccccccCC---CCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCC
Q 004704 262 MNLTRLRHLYFENNNFSGKIKDGLLSS---TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE 338 (735)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 338 (735)
..+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. + +|++|++++|++++. |. +..++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~-~L~~L~Ls~N~l~~~-~~-~~~l~ 294 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--A-KLRVLDLSSNRLNRA-PQ-PDELP 294 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--S-CCSCEECCSCCCCSC-CC-TTSCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--C-CCCEEECCCCcCCCC-ch-hhhCC
Confidence 667888888888888886666666555 57888888888887 6676553 3 378888888877753 32 56667
Q ss_pred CCCEEEcccCCCCc
Q 004704 339 RLRILDISENRLSG 352 (735)
Q Consensus 339 ~L~~L~L~~n~l~~ 352 (735)
+|+.|++++|+++.
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 77777777777653
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.2e-21 Score=196.05 Aligned_cols=192 Identities=19% Similarity=0.329 Sum_probs=115.1
Q ss_pred CCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEc
Q 004704 337 LERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLL 416 (735)
Q Consensus 337 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 416 (735)
+++|++|++++|.+... +....+++|++|++++|.+.+..+ +..+++|++|++++|++++ ++ .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 44455555555544432 222245555555555555554322 5566666666666666653 22 4666666666666
Q ss_pred cCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704 417 GGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 496 (735)
Q Consensus 417 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (735)
++|.+++ ++. +..+++|+.|++++|++++..+ +.
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~------------------------------------------ 148 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LA------------------------------------------ 148 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GG------------------------------------------
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--cc------------------------------------------
Confidence 6666664 332 6666677777777776653221 11
Q ss_pred chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcc
Q 004704 497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE 576 (735)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 576 (735)
.+++|+.|++++|++++ ++. +..+++|+.|++++|++++..+
T Consensus 149 -----------------------------------~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 149 -----------------------------------GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp -----------------------------------GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred -----------------------------------CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh-
Confidence 12456667777777764 333 6677777777777777775433
Q ss_pred cccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704 577 SFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 577 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 620 (735)
+..+++|++|+|++|++++..| +..+++|+.|++++|++++
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6777777777777777775442 6777777777777777765
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=8.2e-21 Score=195.12 Aligned_cols=197 Identities=21% Similarity=0.348 Sum_probs=136.9
Q ss_pred hhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEE
Q 004704 311 NFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 390 (735)
Q Consensus 311 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 390 (735)
.++. |++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++. +.+..+++|++|
T Consensus 39 ~l~~-L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDG-ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHT-CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCC-cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 3444 6666666665553 22 35556666666666666655444 33566666666666666643 256777788888
Q ss_pred eCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCC
Q 004704 391 NLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGS 470 (735)
Q Consensus 391 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~ 470 (735)
++++|++++ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +.
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~---------------- 170 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA---------------- 170 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT----------------
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc----------------
Confidence 888888874 33 37778888888888888875433 7788888888888888874222 22
Q ss_pred CCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCC
Q 004704 471 KLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEI 550 (735)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 550 (735)
.+++|+.|++++|++++.
T Consensus 171 -------------------------------------------------------------~l~~L~~L~l~~n~l~~~- 188 (308)
T 1h6u_A 171 -------------------------------------------------------------NLSKLTTLKADDNKISDI- 188 (308)
T ss_dssp -------------------------------------------------------------TCTTCCEEECCSSCCCCC-
T ss_pred -------------------------------------------------------------CCCCCCEEECCCCccCcC-
Confidence 235678888888888854
Q ss_pred CccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc
Q 004704 551 PSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 601 (735)
Q Consensus 551 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 601 (735)
+. +..+++|+.|+|++|++++..| +..+++|+.|+|++|++++ .|..
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~-~~~~ 235 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPVF 235 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC-CCEE
T ss_pred hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec-CCee
Confidence 33 8888999999999999986553 8899999999999999984 4443
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.9e-21 Score=188.85 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=89.6
Q ss_pred CCCEEECCCccccCccchhhhhCCCCCCEEEccCCC-CCCcCcccccCCCCCCEEEccc-cccCccccccccCCCCCCEE
Q 004704 217 ELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN-FEGQFFSEYMNLTRLRHLYFEN-NNFSGKIKDGLLSSTSLQVL 294 (735)
Q Consensus 217 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L 294 (735)
+|++|++++|+++ .++...+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4555555555554 3343334455555555555554 5444444555566666666665 55554444555566666666
Q ss_pred EeeCCccCCCCCchhhhhcccCc---EEEcCCC-cCCCCCCccCCCCCCCC-EEEcccCCCCccCCCccCCCCccEEEcc
Q 004704 295 DISNNMLSGHIPHWMGNFSSELE---ILSMSKN-HLEGNVPVQLNNLERLR-ILDISENRLSGPIASSLNLSSVEHLSLQ 369 (735)
Q Consensus 295 ~l~~n~l~~~~p~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~l~~L~~L~l~ 369 (735)
++++|.+++ +|. +..+.. |+ .|++++| ++++..+..|.++++|+ +|++++|+++...+..+..++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~-L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCB-CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccc-cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 666666652 444 444443 54 5666665 55544444555556666 6666655555333333322444444444
Q ss_pred CCc-ccccCcccccCC-CCCcEEeCCCCccc
Q 004704 370 KNA-LNGLIPGELFRS-CKLVTLNLRDNTFS 398 (735)
Q Consensus 370 ~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~ 398 (735)
+|+ +++..+..|..+ ++|+.|++++|+++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 442 443333333343 44444444444443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.4e-20 Score=192.90 Aligned_cols=239 Identities=15% Similarity=0.147 Sum_probs=173.4
Q ss_pred CEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCC-Ccc-CCCCccE-EEc
Q 004704 292 QVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIA-SSL-NLSSVEH-LSL 368 (735)
Q Consensus 292 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~-~l~~L~~-L~l 368 (735)
++++.++++++ .+|..+ +.++++|++++|+|+...+.+|.++++|++|+|++|++.+.++ ..+ +++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777888887 777655 3458888888888886666678889999999999998866554 344 6777665 566
Q ss_pred cCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccC-CcCCCCCchhhhcCC-CCCEEECcCCcCC
Q 004704 369 QKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG-NHLQGPIPDQLCQLQ-KLAMMDLSRNKFS 446 (735)
Q Consensus 369 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 446 (735)
..|+++...|+.|..+++|++|++++|++++..+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888888888888899999999999998866666666677788888865 566655555666664 5888999999987
Q ss_pred CCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccc
Q 004704 447 GSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYE 526 (735)
Q Consensus 447 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 526 (735)
...+..+.
T Consensus 168 ~i~~~~f~------------------------------------------------------------------------ 175 (350)
T 4ay9_X 168 EIHNSAFN------------------------------------------------------------------------ 175 (350)
T ss_dssp EECTTSST------------------------------------------------------------------------
T ss_pred CCChhhcc------------------------------------------------------------------------
Confidence 43332221
Q ss_pred cccCCcccccceEECCC-CcccCCCC-ccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccC
Q 004704 527 IYNGSNVNRVTGLDLSC-NQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTA 604 (735)
Q Consensus 527 ~~~~~~l~~L~~LdLs~-N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 604 (735)
..+++.+++++ |.++ .+| ..|+.+++|++|+|++|+|+...+..|. +|+.|...++.--..+| .+.+
T Consensus 176 ------~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 176 ------GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp ------TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTT
T ss_pred ------ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cchh
Confidence 13577788875 5666 555 5678999999999999999955554444 45555555544344677 4788
Q ss_pred CCCCCeEEcccCc
Q 004704 605 LNFLSIFNVSYNN 617 (735)
Q Consensus 605 l~~L~~L~ls~N~ 617 (735)
+++|+.++++++.
T Consensus 245 l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 245 LVALMEASLTYPS 257 (350)
T ss_dssp CCSCCEEECSCHH
T ss_pred CcChhhCcCCCCc
Confidence 9999999998764
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.6e-20 Score=195.34 Aligned_cols=241 Identities=14% Similarity=0.099 Sum_probs=163.1
Q ss_pred CEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE-EEe
Q 004704 23 KILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV-LGL 101 (735)
Q Consensus 23 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~-L~L 101 (735)
++++-++++++ .+|..+ .+++++|+|++|+|+ .+|..+|.++++|++|+|++|.+...++..+|..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 455544 246677777777765 4554566777777777777766666666666666666554 555
Q ss_pred eCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcC-CcCcccCcCCcCCCC-CcCEEEccCCcC
Q 004704 102 TKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKN-NSFSGILQLPKAKHD-FLHHLDISCNNF 179 (735)
Q Consensus 102 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~-~L~~L~Ls~n~l 179 (735)
.+|+++...|.+|..+++|++|++++|+++ .+|...+....++..+++.+ +.+..+.+..|..+. .++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 667777777777888888888888888887 45544444556677777754 566666666666554 577888888888
Q ss_pred CCcCChhHHHhcccCcEEECcC-CcCCCCCC-cccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCCcC
Q 004704 180 RGKLPHNMGVILQKLMYMDISK-NCFEGNIP-YSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEGQF 257 (735)
Q Consensus 180 ~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 257 (735)
+ .+|..++. ..+|+++++++ |.++ .+| ..|..+++|++|++++|+++ .+|... +.+|+.|.+.++.--..+
T Consensus 167 ~-~i~~~~f~-~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 167 Q-EIHNSAFN-GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKL 239 (350)
T ss_dssp C-EECTTSST-TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCC
T ss_pred c-CCChhhcc-ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcC
Confidence 7 67777766 45788888875 4555 455 45788888888888888887 677643 456667766554433345
Q ss_pred cccccCCCCCCEEEccccc
Q 004704 258 FSEYMNLTRLRHLYFENNN 276 (735)
Q Consensus 258 ~~~~~~l~~L~~L~L~~n~ 276 (735)
| .+..+++|+.+++.++.
T Consensus 240 P-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 240 P-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp C-CTTTCCSCCEEECSCHH
T ss_pred C-CchhCcChhhCcCCCCc
Confidence 4 47788889998887653
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.4e-19 Score=197.48 Aligned_cols=188 Identities=22% Similarity=0.370 Sum_probs=130.2
Q ss_pred cCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704 315 ELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 394 (735)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 394 (735)
+++.|++++|.+++ +|..+. ++|++|++++|+++.. | ..+++|+.|++++|.+++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~i-p--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISL-P--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCC-C--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCccc-c--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 38888888888886 555442 6788888888888743 3 346778888888888876 455 443 788888888
Q ss_pred CcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCC
Q 004704 395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNS 474 (735)
Q Consensus 395 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 474 (735)
|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------- 179 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------- 179 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence 88775 554 56778888888887775 454 46677777777777764 443 21
Q ss_pred cccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccc
Q 004704 475 PELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDI 554 (735)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l 554 (735)
++|+.|+|++|+++ .+|. +
T Consensus 180 -----------------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 180 -----------------------------------------------------------ESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp -----------------------------------------------------------TTCCEEECCSSCCS-SCCC-C
T ss_pred -----------------------------------------------------------CCCCEEECcCCCCC-chhh-H
Confidence 24666777777777 5666 5
Q ss_pred cccccC-------CeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCC
Q 004704 555 GQLQAI-------LALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 606 (735)
Q Consensus 555 ~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 606 (735)
.. +| +.|+|++|.|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 56 77777777777 4666666677777777777777777777666544
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.3e-19 Score=173.19 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=59.8
Q ss_pred CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 394 (735)
Q Consensus 316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 394 (735)
+++|++++|++++..+..|..+++|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 5555555555554444444555555555555555544333332 344444444444444433333344444444444444
Q ss_pred CcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcC
Q 004704 395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 445 (735)
Q Consensus 395 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 445 (735)
|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 444433333344444444444444444433333344444444444444443
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=174.17 Aligned_cols=157 Identities=21% Similarity=0.249 Sum_probs=129.9
Q ss_pred cEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCc-hhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCc
Q 004704 388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIP-DQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 466 (735)
Q Consensus 388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 466 (735)
+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|+.|++++|++++..+..|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 57888888887 4565553 456888888888886644 45788888999999998888665555543
Q ss_pred cCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc
Q 004704 467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 546 (735)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 546 (735)
+++|+.|+|++|++
T Consensus 80 ------------------------------------------------------------------l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 80 ------------------------------------------------------------------ASGVNEILLTSNRL 93 (220)
T ss_dssp ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred ------------------------------------------------------------------CCCCCEEECCCCcc
Confidence 25678899999999
Q ss_pred cCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 547 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|++++.++-
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 877777899999999999999999988899999999999999999999998899999999999999999999887663
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.7e-19 Score=171.07 Aligned_cols=162 Identities=22% Similarity=0.219 Sum_probs=86.8
Q ss_pred CccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECc
Q 004704 362 SVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLS 441 (735)
Q Consensus 362 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 441 (735)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444443333344455555555555555554444444555555555555555554444445555566666666
Q ss_pred CCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEe
Q 004704 442 RNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAM 521 (735)
Q Consensus 442 ~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 521 (735)
+|++++..+..+..
T Consensus 109 ~N~l~~~~~~~~~~------------------------------------------------------------------ 122 (208)
T 2o6s_A 109 TNQLQSLPDGVFDK------------------------------------------------------------------ 122 (208)
T ss_dssp SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcCcccCHhHhcc------------------------------------------------------------------
Confidence 66555333322222
Q ss_pred ccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCcc
Q 004704 522 KNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQ 601 (735)
Q Consensus 522 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 601 (735)
+++|+.|++++|++++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|..
T Consensus 123 -----------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 123 -----------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -----------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred -----------CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 2345556666666664444445666666666666665553 2345666666666666666666
Q ss_pred ccCCCC
Q 004704 602 LTALNF 607 (735)
Q Consensus 602 l~~l~~ 607 (735)
++.++.
T Consensus 185 ~~~l~~ 190 (208)
T 2o6s_A 185 AGSVAP 190 (208)
T ss_dssp TSSBCT
T ss_pred CccccC
Confidence 665543
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=4.4e-19 Score=172.47 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=122.1
Q ss_pred cEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCcc
Q 004704 388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVL 467 (735)
Q Consensus 388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 467 (735)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l----------- 79 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL----------- 79 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC-----------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-----------
Confidence 46777777776 5565444 578888888888886666678888888888888888876666655442
Q ss_pred CCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCccc
Q 004704 468 NGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLT 547 (735)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 547 (735)
++|+.|+|++|+++
T Consensus 80 ------------------------------------------------------------------~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 80 ------------------------------------------------------------------RSLNSLVLYGNKIT 93 (220)
T ss_dssp ------------------------------------------------------------------SSCCEEECCSSCCC
T ss_pred ------------------------------------------------------------------cCCCEEECCCCcCC
Confidence 56777888888888
Q ss_pred CCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCC
Q 004704 548 GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTP 623 (735)
Q Consensus 548 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 623 (735)
+..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|++|++++|++.+.++
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 5555567888899999999999998888889999999999999999998888888889999999998888876443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=8.5e-19 Score=193.16 Aligned_cols=167 Identities=23% Similarity=0.314 Sum_probs=78.2
Q ss_pred CCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEE
Q 004704 265 TRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILD 344 (735)
Q Consensus 265 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 344 (735)
++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++++|++++ +|. .+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT---TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc---CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 34444444444444 233 223444444444444442 343 222 25555555555443 232 344455555
Q ss_pred cccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCc-------cEEEcc
Q 004704 345 ISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNL-------RFLLLG 417 (735)
Q Consensus 345 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~ 417 (735)
+++|.+++.+. .+++|+.|++++|.+++ +|. +. ++|+.|++++|+|+ .+|. +.. +| +.|+|+
T Consensus 147 Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 147 ADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred CCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 55555544222 34455555555555544 333 32 45555555555555 3343 332 44 555555
Q ss_pred CCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcc
Q 004704 418 GNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 456 (735)
Q Consensus 418 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 456 (735)
+|.++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 55555 345555555555555555555555555555444
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.8e-18 Score=169.30 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=129.2
Q ss_pred CCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCC
Q 004704 386 KLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDD 465 (735)
Q Consensus 386 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~ 465 (735)
+-+.++.++++++ .+|..+. ++|++|+|++|.+.+..|..|..+++|+.|++++|++++..+..|..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 3567888888776 5665544 78888888888888877888888888999999998886444443333
Q ss_pred ccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCc
Q 004704 466 VLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQ 545 (735)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 545 (735)
+++|+.|+|++|+
T Consensus 87 -------------------------------------------------------------------l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 87 -------------------------------------------------------------------LTQLTVLDLGTNQ 99 (229)
T ss_dssp -------------------------------------------------------------------CTTCCEEECCSSC
T ss_pred -------------------------------------------------------------------CCCcCEEECCCCc
Confidence 3567889999999
Q ss_pred ccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC
Q 004704 546 LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 546 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
+++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 98766777889999999999999999 7888899999999999999999987778899999999999999999877653
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=2.5e-19 Score=188.56 Aligned_cols=178 Identities=25% Similarity=0.216 Sum_probs=109.4
Q ss_pred cEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhh-CCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcC
Q 004704 364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQIN-EHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 442 (735)
Q Consensus 364 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 442 (735)
+.++++++.++. +|..+. ..++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 466777776664 344332 3466777777777765555565 667777777777777765566677777777777777
Q ss_pred CcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEec
Q 004704 443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 522 (735)
Q Consensus 443 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 522 (735)
|++++..+..|..
T Consensus 98 N~l~~~~~~~~~~------------------------------------------------------------------- 110 (361)
T 2xot_A 98 NHLHTLDEFLFSD------------------------------------------------------------------- 110 (361)
T ss_dssp SCCCEECTTTTTT-------------------------------------------------------------------
T ss_pred CcCCcCCHHHhCC-------------------------------------------------------------------
Confidence 7766443333322
Q ss_pred cccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccc---cCcCCCCEEeCCCCcccccCC
Q 004704 523 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESF---SNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 523 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~~~~p 599 (735)
+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|++++..+
T Consensus 111 ----------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 111 ----------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp ----------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred ----------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 2456666777777666666666666777777777777665444444 456666677777776665444
Q ss_pred ccccCCCC--CCeEEcccCcCccc
Q 004704 600 PQLTALNF--LSIFNVSYNNLSGR 621 (735)
Q Consensus 600 ~~l~~l~~--L~~L~ls~N~l~~~ 621 (735)
..+..++. ++.|++++|++.+.
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEECC
T ss_pred HHhhhccHhhcceEEecCCCccCC
Confidence 55665554 35666666666543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.4e-18 Score=168.82 Aligned_cols=157 Identities=20% Similarity=0.282 Sum_probs=137.1
Q ss_pred cEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCC
Q 004704 412 RFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRS 491 (735)
Q Consensus 412 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (735)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------ 54 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------ 54 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence 67899999998 5666554 68999999999998655544443
Q ss_pred CccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCc
Q 004704 492 SNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLS 571 (735)
Q Consensus 492 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 571 (735)
+++|+.|+|++|++++..|..|..+++|++|+|++|+|+
T Consensus 55 -----------------------------------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 55 -----------------------------------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred -----------------------------------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 367889999999999888999999999999999999999
Q ss_pred ccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcccCCC-CCCCCccCCcccCCCCCCCCcccc
Q 004704 572 GSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQ 648 (735)
Q Consensus 572 ~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~~~ 648 (735)
+..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+. ...+..+....+.+||+.|+|.+.
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 77777799999999999999999999999999999999999999999988875 455667778889999999998764
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.9e-18 Score=174.41 Aligned_cols=170 Identities=21% Similarity=0.358 Sum_probs=107.3
Q ss_pred CCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEE
Q 004704 360 LSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMD 439 (735)
Q Consensus 360 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 439 (735)
+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 34444444444444432 2 24555666666666666654332 5666666666666666653 22 366667777777
Q ss_pred CcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEE
Q 004704 440 LSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEF 519 (735)
Q Consensus 440 Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 519 (735)
+++|++++. + .+.
T Consensus 119 L~~n~i~~~-~-~l~----------------------------------------------------------------- 131 (291)
T 1h6t_A 119 LEHNGISDI-N-GLV----------------------------------------------------------------- 131 (291)
T ss_dssp CTTSCCCCC-G-GGG-----------------------------------------------------------------
T ss_pred CCCCcCCCC-h-hhc-----------------------------------------------------------------
Confidence 777766532 1 111
Q ss_pred EeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704 520 AMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 520 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 599 (735)
.+++|+.|++++|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++ +|
T Consensus 132 ------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~ 194 (291)
T 1h6t_A 132 ------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR 194 (291)
T ss_dssp ------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG
T ss_pred ------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch
Confidence 124566677777777643 457777788888888888876544 7778888888888888874 44
Q ss_pred ccccCCCCCCeEEcccCcCcc
Q 004704 600 PQLTALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 600 ~~l~~l~~L~~L~ls~N~l~~ 620 (735)
.+..+++|+.|++++|+++.
T Consensus 195 -~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 -ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGTTCTTCSEEEEEEEEEEC
T ss_pred -hhccCCCCCEEECcCCcccC
Confidence 37778888888888887765
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=9.6e-19 Score=184.11 Aligned_cols=111 Identities=27% Similarity=0.199 Sum_probs=63.8
Q ss_pred CEEEcccCCCCccCCCccCCCCccEEEccCCcccccCccccc-CCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCC
Q 004704 341 RILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELF-RSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGN 419 (735)
Q Consensus 341 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 419 (735)
+.++++++.++..+... .+.++.|++++|.+++..+..+. .+++|+.|++++|+|++..+..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45666666655433222 23356666666666655555555 5666666666666666555555666666666666666
Q ss_pred cCCCCCchhhhcCCCCCEEECcCCcCCCCCCchh
Q 004704 420 HLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCF 453 (735)
Q Consensus 420 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 453 (735)
++++..+..|..+++|+.|+|++|++++..|..|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 132 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence 6665555556666666666666666654444433
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.7e-18 Score=164.06 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=120.1
Q ss_pred cEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCC-hhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcC
Q 004704 364 EHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIP-HQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 442 (735)
Q Consensus 364 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 442 (735)
+.+++++|.++. +|..+. ..++.|++++|++++..+ ..|..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 344332 345777788887776544 4567788888888888888876677788888888888888
Q ss_pred CcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEec
Q 004704 443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 522 (735)
Q Consensus 443 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 522 (735)
|++++..|..|..
T Consensus 91 N~l~~~~~~~~~~------------------------------------------------------------------- 103 (220)
T 2v70_A 91 NRLENVQHKMFKG------------------------------------------------------------------- 103 (220)
T ss_dssp SCCCCCCGGGGTT-------------------------------------------------------------------
T ss_pred CccCccCHhHhcC-------------------------------------------------------------------
Confidence 8887666555543
Q ss_pred cccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704 523 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 523 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 599 (735)
+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+.+..+
T Consensus 104 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 104 ----------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ----------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ----------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 2567788888888888888889999999999999999998889999999999999999999986544
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=5.6e-18 Score=172.29 Aligned_cols=187 Identities=21% Similarity=0.317 Sum_probs=134.7
Q ss_pred EEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCccc
Q 004704 319 LSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFS 398 (735)
Q Consensus 319 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 398 (735)
+.+..+.+++..+ +..+++|+.|++++|.+... +....+++|+.|++++|.+++..+ +..+++|++|++++|+++
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 3444444443222 23455666666666666543 333356777777777777765433 777888888888888887
Q ss_pred ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccc
Q 004704 399 GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELD 478 (735)
Q Consensus 399 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 478 (735)
+ ++ .+..+++|++|++++|.+++. +.+..+++|+.|++++|++++. ..+.
T Consensus 104 ~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~------------------------ 153 (291)
T 1h6t_A 104 D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS------------------------ 153 (291)
T ss_dssp C-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG------------------------
T ss_pred C-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc------------------------
Confidence 4 33 478888888888888888853 4678888999999999988743 2222
Q ss_pred hhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccc
Q 004704 479 EEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQ 558 (735)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 558 (735)
.+++|+.|++++|++++..| +..++
T Consensus 154 -----------------------------------------------------~l~~L~~L~L~~N~l~~~~~--l~~l~ 178 (291)
T 1h6t_A 154 -----------------------------------------------------RLTKLDTLSLEDNQISDIVP--LAGLT 178 (291)
T ss_dssp -----------------------------------------------------GCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred -----------------------------------------------------cCCCCCEEEccCCccccchh--hcCCC
Confidence 23678889999999986544 88999
Q ss_pred cCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccccc
Q 004704 559 AILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQ 597 (735)
Q Consensus 559 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 597 (735)
+|+.|++++|.+++ +|. +..+++|+.|++++|+++..
T Consensus 179 ~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 179 KLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred ccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence 99999999999995 454 89999999999999999853
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.7e-18 Score=179.88 Aligned_cols=292 Identities=13% Similarity=0.101 Sum_probs=182.4
Q ss_pred CccccccCC--CCCCCEEeCCCCcCCCCcchhhhC-CCCCCEEeCCCCccc--ccCChhhhhcCCCCCeeeccccccccc
Q 004704 10 SPLITCLKN--LTRLKILDISSNQLNGSLPSVISN-LTSLEYLDLSHNNFE--GMFPLSSLANHSKLEGLLLSTRNNTLH 84 (735)
Q Consensus 10 ~~~~~~~~~--l~~L~~L~Ls~n~i~~~~p~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~~l~~L~~L~L~~~~~~~~ 84 (735)
|.++..+.. ++++++|+++++ +.......+.. +++|++|||++|++. ...+ ..+ +.++.+.+..+ .
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~-~~~---~~~~~~~~~~~----~ 83 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA-GTY---PNGKFYIYMAN----F 83 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS-SSS---GGGCCEEECTT----E
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc-ccc---ccccccccccc----c
Confidence 445555554 778899999875 22222234444 788999999999886 1111 111 12333444333 4
Q ss_pred ccCCCCCC--------CCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCc--
Q 004704 85 VKTENWLP--------TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNS-- 154 (735)
Q Consensus 85 ~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~-- 154 (735)
++..+|.. |++|+.++|.+ +++.+...+|.+|++|+.|++++|.+. .++...|..+.++..+.+..+.
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh
Confidence 66667777 88888888888 777777778888888888888888887 6776777677777766665532
Q ss_pred --CcccCcCCcCCCCCcC-EEEccCCcCCCcCChhHHHh---cccCcEEECcCCcCCCCCCccc-CCCCCCCEEECCCcc
Q 004704 155 --FSGILQLPKAKHDFLH-HLDISCNNFRGKLPHNMGVI---LQKLMYMDISKNCFEGNIPYSA-GEMKELSLLDLSRNY 227 (735)
Q Consensus 155 --l~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~ 227 (735)
...+...+|..+..|+ .+.+.... .++..++.. ..+++.+.+.++-.. .....+ ..+++|+.+++++|.
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBC
T ss_pred hccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCC
Confidence 2333345566666666 45554322 344444432 345555555543211 111111 126777777777777
Q ss_pred ccCccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCC-EEEccccccCccccccccCCCCCCEEEeeCCccCCCCC
Q 004704 228 FSGGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLR-HLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIP 306 (735)
Q Consensus 228 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p 306 (735)
++ .++...|.+|.+|+++++.+| +..+...+|.++++|+ .+++.+ .++...+.+|..+++|+.++++.|.++..-+
T Consensus 238 i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 238 AT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred cc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 76 677777777777777777776 6666667777777777 777777 5665566777777777777777777763334
Q ss_pred chhhhhcccCcEEE
Q 004704 307 HWMGNFSSELEILS 320 (735)
Q Consensus 307 ~~~~~~~~~L~~L~ 320 (735)
..|..+++ |+.++
T Consensus 315 ~aF~~~~~-L~~ly 327 (329)
T 3sb4_A 315 ELFGNGVP-SKLIY 327 (329)
T ss_dssp TTTCTTCC-CCEEE
T ss_pred hhhcCCcc-hhhhc
Confidence 45555555 77665
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3e-17 Score=160.57 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=126.7
Q ss_pred ccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcC
Q 004704 363 VEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSR 442 (735)
Q Consensus 363 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 442 (735)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|.+.+..+..|..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 455666666665 3344332 6788888988888887788888889999999999998866667788899999999999
Q ss_pred CcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEec
Q 004704 443 NKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMK 522 (735)
Q Consensus 443 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 522 (735)
|++++..+..|..
T Consensus 98 N~l~~l~~~~~~~------------------------------------------------------------------- 110 (229)
T 3e6j_A 98 NQLTVLPSAVFDR------------------------------------------------------------------- 110 (229)
T ss_dssp SCCCCCCTTTTTT-------------------------------------------------------------------
T ss_pred CcCCccChhHhCc-------------------------------------------------------------------
Confidence 9988655544433
Q ss_pred cccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704 523 NRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 523 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 599 (735)
+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..+
T Consensus 111 ----------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 111 ----------LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ----------CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ----------chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 357888999999998 789999999999999999999998777889999999999999999986543
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.3e-18 Score=188.45 Aligned_cols=104 Identities=23% Similarity=0.309 Sum_probs=54.3
Q ss_pred CCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEE
Q 004704 336 NLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLL 415 (735)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 415 (735)
.++.|+.|++++|.+... +....+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ +| .+..+++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 344455555555544432 222245555555555555554332 5555556666666665553 22 455566666666
Q ss_pred ccCCcCCCCCchhhhcCCCCCEEECcCCcCC
Q 004704 416 LGGNHLQGPIPDQLCQLQKLAMMDLSRNKFS 446 (735)
Q Consensus 416 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 446 (735)
|++|.+.+ + +.+..+++|+.|+|++|+++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccC
Confidence 66666653 2 23556666666666666655
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=4.9e-18 Score=161.30 Aligned_cols=113 Identities=22% Similarity=0.285 Sum_probs=86.2
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 613 (735)
++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..|+++++|++|||++|++++.+|..+..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 56677788888887777888888888888888888888888888888899999999999998888888888899999999
Q ss_pred ccCcCcccCCCCCCCCccCCcccCCCCCCCCcc
Q 004704 614 SYNNLSGRTPDKGQFATFDESSYRGNPSLCAWL 646 (735)
Q Consensus 614 s~N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~ 646 (735)
++|+++|.++.......+....+.++...|+.|
T Consensus 134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999988877632211112223445566667654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=8.5e-18 Score=160.52 Aligned_cols=154 Identities=17% Similarity=0.265 Sum_probs=110.2
Q ss_pred cCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhccccccc
Q 004704 382 FRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRV 461 (735)
Q Consensus 382 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 461 (735)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..|..++.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 44566777777777776 445 5677777777777777655 2346777778888888888777544444332
Q ss_pred ccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEEC
Q 004704 462 GSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDL 541 (735)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 541 (735)
+++|+.|++
T Consensus 111 -----------------------------------------------------------------------l~~L~~L~L 119 (197)
T 4ezg_A 111 -----------------------------------------------------------------------LTSLTLLDI 119 (197)
T ss_dssp -----------------------------------------------------------------------CTTCCEEEC
T ss_pred -----------------------------------------------------------------------CCCCCEEEe
Confidence 356777888
Q ss_pred CCCcccCCCCccccccccCCeEeCCCCc-CcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704 542 SCNQLTGEIPSDIGQLQAILALNLSNNS-LSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 542 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 620 (735)
++|++++..|..++.+++|++|++++|. ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 8888877677778888888888888887 55 455 58888888888888888885 44 67888888888888888754
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.8e-17 Score=183.18 Aligned_cols=174 Identities=24% Similarity=0.376 Sum_probs=120.1
Q ss_pred cCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCC
Q 004704 262 MNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLR 341 (735)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 341 (735)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++. +. +..++. |+.|+|++|.+.+ ++ .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~-L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKN-LGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTT-CCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCC-CCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 345555555666555542 22 355566666666666666533 22 555554 6666666666664 22 566777777
Q ss_pred EEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcC
Q 004704 342 ILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHL 421 (735)
Q Consensus 342 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 421 (735)
.|+|++|.+.+. +....+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|.+
T Consensus 113 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 777777777653 3344677888888888887765 567788888899999888886555 78888999999999988
Q ss_pred CCCCchhhhcCCCCCEEECcCCcCCCCC
Q 004704 422 QGPIPDQLCQLQKLAMMDLSRNKFSGSI 449 (735)
Q Consensus 422 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 449 (735)
.+. +.+..+++|+.|+|++|++++..
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 853 35888899999999999887543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.2e-17 Score=167.19 Aligned_cols=172 Identities=20% Similarity=0.276 Sum_probs=136.4
Q ss_pred CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEE
Q 004704 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMM 438 (735)
Q Consensus 359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 438 (735)
.+.++..++++++.+++.. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3455666777777776543 5677888889999988887 455 67888899999999999886444 8889999999
Q ss_pred ECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEE
Q 004704 439 DLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIE 518 (735)
Q Consensus 439 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 518 (735)
++++|++++ +|..
T Consensus 91 ~L~~N~l~~-l~~~------------------------------------------------------------------ 103 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI------------------------------------------------------------------ 103 (263)
T ss_dssp ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred ECCCCccCC-cCcc------------------------------------------------------------------
Confidence 999998874 2210
Q ss_pred EEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccC
Q 004704 519 FAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQI 598 (735)
Q Consensus 519 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 598 (735)
.. ++|+.|++++|++++ +| .++.+++|+.|+|++|++++. | .++.+++|+.|+|++|++++.
T Consensus 104 ------------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 104 ------------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp ------------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred ------------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 01 467889999999985 33 588999999999999999964 4 689999999999999999976
Q ss_pred CccccCCCCCCeEEcccCcCcccC
Q 004704 599 PPQLTALNFLSIFNVSYNNLSGRT 622 (735)
Q Consensus 599 p~~l~~l~~L~~L~ls~N~l~~~~ 622 (735)
..+..+++|+.|++++|++++..
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -HHhccCCCCCEEeCCCCcccCCc
Confidence 67889999999999999998763
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=6.8e-20 Score=203.16 Aligned_cols=216 Identities=19% Similarity=0.182 Sum_probs=131.4
Q ss_pred cCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCcc
Q 004704 286 LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVE 364 (735)
Q Consensus 286 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~ 364 (735)
...+.|+.|++++|+++ .+|..++.+.. |+.|++++|......|.. +..+...+.++..+ .+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 45667777777777776 67777777766 777777555311001100 00111122222222 344444
Q ss_pred EEE-ccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCC
Q 004704 365 HLS-LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRN 443 (735)
Q Consensus 365 ~L~-l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 443 (735)
.|+ ++.|.+. .|..+.+++|.++.. +. ..|+.|+|++|.+++ +|. +..+++|+.|++++|
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred cCcchhhcccc-----------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 444 3333221 233334444444421 11 247778888887775 555 777778888888888
Q ss_pred cCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecc
Q 004704 444 KFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKN 523 (735)
Q Consensus 444 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 523 (735)
+++ .+|..++.+
T Consensus 474 ~l~-~lp~~~~~l------------------------------------------------------------------- 485 (567)
T 1dce_A 474 RLR-ALPPALAAL------------------------------------------------------------------- 485 (567)
T ss_dssp CCC-CCCGGGGGC-------------------------------------------------------------------
T ss_pred ccc-ccchhhhcC-------------------------------------------------------------------
Confidence 777 566555442
Q ss_pred ccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccC-cccccCcCCCCEEeCCCCcccccCCcc-
Q 004704 524 RYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIPPQ- 601 (735)
Q Consensus 524 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p~~- 601 (735)
++|+.|+|++|++++ +| .++.+++|+.|+|++|+|++.+ |..|+++++|+.|+|++|++++.+|..
T Consensus 486 ----------~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 486 ----------RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp ----------TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred ----------CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 456677777777774 56 6788888888888888888766 788888888888888888888665432
Q ss_pred --ccCCCCCCeEEc
Q 004704 602 --LTALNFLSIFNV 613 (735)
Q Consensus 602 --l~~l~~L~~L~l 613 (735)
+..+++|+.||+
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 234777887764
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=6.9e-17 Score=154.17 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=36.2
Q ss_pred cccceEECCCCc-ccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccc
Q 004704 534 NRVTGLDLSCNQ-LTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTG 596 (735)
Q Consensus 534 ~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 596 (735)
++|+.|++++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 136 ~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 136 PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 345556666665 33 444 46677777777777777774 33 57777777777777777653
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=6.8e-19 Score=195.13 Aligned_cols=183 Identities=18% Similarity=0.216 Sum_probs=140.5
Q ss_pred CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCc-------------ccccCChhhhCCCCccEEE-ccCCcCCCC
Q 004704 359 NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNT-------------FSGRIPHQINEHSNLRFLL-LGGNHLQGP 424 (735)
Q Consensus 359 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~ 424 (735)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~- 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD- 424 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-
Confidence 4556666666666665 456666666777777765554 4456667777777777777 55554331
Q ss_pred Cch------hhhc--CCCCCEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCcccc
Q 004704 425 IPD------QLCQ--LQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMF 496 (735)
Q Consensus 425 ~~~------~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (735)
++. .+.. ...|+.|++++|++++ +|. ++.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~----------------------------------------- 461 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ----------------------------------------- 461 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG-----------------------------------------
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc-----------------------------------------
Confidence 111 1111 1358899999999985 454 443
Q ss_pred chhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcc
Q 004704 497 GMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE 576 (735)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 576 (735)
+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +|
T Consensus 462 ------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp- 502 (567)
T 1dce_A 462 ------------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD- 502 (567)
T ss_dssp ------------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred ------------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence 367888999999999 889999999999999999999996 67
Q ss_pred cccCcCCCCEEeCCCCcccccC-CccccCCCCCCeEEcccCcCcccCCCC
Q 004704 577 SFSNLKMIESLDISYNKLTGQI-PPQLTALNFLSIFNVSYNNLSGRTPDK 625 (735)
Q Consensus 577 ~~~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~~p~~ 625 (735)
.|+++++|+.|+|++|++++.+ |..+..+++|+.|++++|++++.+|..
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 8999999999999999999887 999999999999999999999988754
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=3.1e-17 Score=170.31 Aligned_cols=284 Identities=14% Similarity=0.095 Sum_probs=129.9
Q ss_pred CCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCc--ccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHh----
Q 004704 117 QYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFS--GILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVI---- 190 (735)
Q Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---- 190 (735)
+.+++.|+++++ +...--..+...+++|+.|+|++|++. ...... ++.++.+.+..| .+|...|..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence 445777777754 211111122222677777777777776 222111 122333444443 345555554
Q ss_pred ----cccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC----CCCcCccccc
Q 004704 191 ----LQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN----FEGQFFSEYM 262 (735)
Q Consensus 191 ----l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~ 262 (735)
+++|+.+++.+ .++...+.+|..+++|+.+++++|.+. .++...|.++.++..+....+. .......+|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 55666666655 454333444555555666666555554 4444555555444444443311 1112223344
Q ss_pred CCCCCC-EEEccccccCccccccc----cCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCC
Q 004704 263 NLTRLR-HLYFENNNFSGKIKDGL----LSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNL 337 (735)
Q Consensus 263 ~l~~L~-~L~L~~n~l~~~~~~~l----~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 337 (735)
++..|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+.....+|+.+++++|+++...+.+|.++
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 444444 23222211 111110 12234444444433111 1111111111225555555555554444445555
Q ss_pred CCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCc-EEeCCCCcccccCChhhhCCCCccEEEc
Q 004704 338 ERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLV-TLNLRDNTFSGRIPHQINEHSNLRFLLL 416 (735)
Q Consensus 338 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L 416 (735)
++|+.+++.+| +..+.+.+|.+|.+|+ .+++.+ .++...+.+|.+|++|+.+++
T Consensus 250 ~~L~~l~l~~n------------------------i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 250 KYLLKIKLPHN------------------------LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TTCCEEECCTT------------------------CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCCCEEECCcc------------------------cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 55555555444 3334444555555555 555555 444444455556666666666
Q ss_pred cCCcCCCCCchhhhcCCCCCEEE
Q 004704 417 GGNHLQGPIPDQLCQLQKLAMMD 439 (735)
Q Consensus 417 ~~n~l~~~~~~~~~~l~~L~~L~ 439 (735)
++|.++...+.+|.++++|+.++
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCccCccchhhhcCCcchhhhc
Confidence 55655544455566666665554
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=5.9e-17 Score=153.77 Aligned_cols=132 Identities=26% Similarity=0.380 Sum_probs=110.0
Q ss_pred cEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCch-hhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCc
Q 004704 388 VTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPD-QLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 466 (735)
Q Consensus 388 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 466 (735)
+.+++++|+++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---------- 77 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence 67888888886 66665543 888889999988866554 48888999999999999987777666543
Q ss_pred cCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc
Q 004704 467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 546 (735)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 546 (735)
++|+.|+|++|++
T Consensus 78 -------------------------------------------------------------------~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 78 -------------------------------------------------------------------SHIQELQLGENKI 90 (192)
T ss_dssp -------------------------------------------------------------------TTCCEEECCSCCC
T ss_pred -------------------------------------------------------------------ccCCEEECCCCcC
Confidence 5678899999999
Q ss_pred cCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704 547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 547 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 599 (735)
++..|..|+.+++|++|+|++|++++.+|..|+.+++|++|+|++|.+++..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 98888889999999999999999999999999999999999999999997655
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=8.7e-18 Score=192.30 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=98.6
Q ss_pred EcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccc
Q 004704 320 SMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSG 399 (735)
Q Consensus 320 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 399 (735)
+++.|.+. ..+..+..++.|+.|+|++|.+....+..+.+++|+.|+|++|.++ .+|..+..+++|++|+|++|.|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 33344444 5577788888899999999888865555568888888999888888 67888888889999999999988
Q ss_pred cCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhc
Q 004704 400 RIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFAN 455 (735)
Q Consensus 400 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 455 (735)
.+|..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 77888888889999999999887 67777888899999999999988877776654
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.3e-16 Score=159.63 Aligned_cols=161 Identities=25% Similarity=0.289 Sum_probs=104.5
Q ss_pred cCCCCCCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccc
Q 004704 2 NLERNFIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNN 81 (735)
Q Consensus 2 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~ 81 (735)
+++++.+++. + .+.++++|++|++++|.++ .+| .++.+++|++|++++|++++..+ +.++++|++|++++|.+
T Consensus 25 ~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 25 NLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCC
T ss_pred HhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCcc
Confidence 4566777653 2 5777788888888888777 344 67778888888888888774332 77777777777777766
Q ss_pred cccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcC
Q 004704 82 TLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQL 161 (735)
Q Consensus 82 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 161 (735)
... +. +.. ++|++|++++|++++. +.+..+++|++|++++|+++ .++ . +..+++|++|++++|.+++. .
T Consensus 98 ~~l-~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 98 KNL-NG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp SCC-TT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCCBC--T
T ss_pred CCc-Cc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCcch--H
Confidence 442 22 112 6677777777776653 34666677777777777766 344 2 34666666666666666665 4
Q ss_pred CcCCCCCcCEEEccCCcCC
Q 004704 162 PKAKHDFLHHLDISCNNFR 180 (735)
Q Consensus 162 ~~~~~~~L~~L~Ls~n~l~ 180 (735)
.+..+++|++|++++|.+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCccc
Confidence 4556666666666666655
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=3e-17 Score=187.78 Aligned_cols=227 Identities=21% Similarity=0.215 Sum_probs=122.8
Q ss_pred CCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEE
Q 004704 289 TSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLS 367 (735)
Q Consensus 289 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~ 367 (735)
+.++.|++.+|.+.. ++.. . ++.++|+.|.+. .++++.|.+. .++..+ .++.|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~-l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----L-LQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCc-chhh-----H-hhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEE
Confidence 456666776666652 2221 1 555566655544 2344455555 334444 789999999
Q ss_pred ccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCC
Q 004704 368 LQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSG 447 (735)
Q Consensus 368 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 447 (735)
|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 9999998 56777779999999999999999 88999999999999999999999 77999999999999999999996
Q ss_pred CCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEecccccc
Q 004704 448 SIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEI 527 (735)
Q Consensus 448 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 527 (735)
.+|..|+.+
T Consensus 307 ~lp~~~~~l----------------------------------------------------------------------- 315 (727)
T 4b8c_D 307 TLPWEFGNL----------------------------------------------------------------------- 315 (727)
T ss_dssp CCCSSTTSC-----------------------------------------------------------------------
T ss_pred ccChhhhcC-----------------------------------------------------------------------
Confidence 667665543
Q ss_pred ccCCcccccceEECCCCcccCCCCcccccccc-CCeEeCCCCcCcccCcccccCcCCCCEEeCCCC--------cccccC
Q 004704 528 YNGSNVNRVTGLDLSCNQLTGEIPSDIGQLQA-ILALNLSNNSLSGSIPESFSNLKMIESLDISYN--------KLTGQI 598 (735)
Q Consensus 528 ~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N--------~l~~~~ 598 (735)
++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++| .+.+..
T Consensus 316 ------~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~ 383 (727)
T 4b8c_D 316 ------CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQST 383 (727)
T ss_dssp ------TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------
T ss_pred ------CCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccc
Confidence 56788999999999988888876533 234789999999988864 566777777 455555
Q ss_pred CccccCCCCCCeEEcccCcCcccCCC
Q 004704 599 PPQLTALNFLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 599 p~~l~~l~~L~~L~ls~N~l~~~~p~ 624 (735)
+..+..+..+....+++|-+.+....
T Consensus 384 ~~~~~~l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 384 EHLATDLAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp ------------------CCCGGGCC
T ss_pred cchhhcccccceeeeeccccccccCc
Confidence 66667777888889999988754443
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=3.7e-15 Score=157.83 Aligned_cols=268 Identities=12% Similarity=0.146 Sum_probs=185.1
Q ss_pred CCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCC
Q 004704 42 NLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLK 121 (735)
Q Consensus 42 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 121 (735)
.+..++.+.+..+ ++ .++..+|.++ +|+.+.+..+ ...++..+|..+ +|+.+.+.+ .+......+|.+|++|+
T Consensus 111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 3456666666543 33 3444556664 5777766543 445566666664 577777765 56656667777888888
Q ss_pred EEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcC
Q 004704 122 YLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISK 201 (735)
Q Consensus 122 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 201 (735)
.+++++|+++ .++...|. +.+|+.+.+..+ ++.+...+|..+++|+.+++..+ ++ .++...|.. .+|+.+.+.+
T Consensus 184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp EEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET
T ss_pred eeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC
Confidence 8888877777 67777664 677888888743 66777777888888888888764 44 566666664 5788888843
Q ss_pred CcCCCCCCcccCCCCCCCEEECCCcccc----CccchhhhhCCCCCCEEEccCCCCCCcCcccccCCCCCCEEEcccccc
Q 004704 202 NCFEGNIPYSAGEMKELSLLDLSRNYFS----GGLSQSVVTGCFSLELLDLSNNNFEGQFFSEYMNLTRLRHLYFENNNF 277 (735)
Q Consensus 202 n~l~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 277 (735)
.++.....+|..+++|+.+++.+|.+. ..++...|.+|.+|+.+++. +.++.....+|.+|++|+.+.+..+ +
T Consensus 258 -~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 258 -GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp -TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred -CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence 455445667778888888888776553 13667777888888888888 4477666778888888888888654 6
Q ss_pred CccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcC
Q 004704 278 SGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHL 326 (735)
Q Consensus 278 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l 326 (735)
+.....+|..+ +|+.+++.+|......+..+..++..++.|++..+.+
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 65666778888 8888888888776444455566655578888876654
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=3e-15 Score=158.50 Aligned_cols=267 Identities=8% Similarity=0.050 Sum_probs=188.3
Q ss_pred hcCCCCCeeecccccccccccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCC
Q 004704 66 ANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKL 145 (735)
Q Consensus 66 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 145 (735)
..+..++.+.+.. ....++..+|..+ +|+.+.+..+ ++.+...+|.++ +|+.+++.. .++ .++...|.+|++|
T Consensus 110 ~~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L 182 (401)
T 4fdw_A 110 EILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNL 182 (401)
T ss_dssp EECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTC
T ss_pred EecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccC
Confidence 3456777777753 2455666677765 6888888765 666666677774 688888875 565 6666667788888
Q ss_pred cEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCC
Q 004704 146 EVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSR 225 (735)
Q Consensus 146 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 225 (735)
+.+++.+|.++.+....|. +.+|+.+.+..+ ++ .++...|..+++|+.+++..+ ++..-..+|.. .+|+.+.+.
T Consensus 183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred CeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence 8888888888877777776 578888888754 55 677777777888888888765 44333445555 678888884
Q ss_pred ccccCccchhhhhCCCCCCEEEccCCCCC-----CcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCc
Q 004704 226 NYFSGGLSQSVVTGCFSLELLDLSNNNFE-----GQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNM 300 (735)
Q Consensus 226 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 300 (735)
+.++ .++...|.+|.+|+.+++.+|.+. .....+|.+|++|+.+.+.+ .++.....+|..+++|+.+++..+
T Consensus 257 ~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 257 NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence 3454 667777788888888888877664 35567788888888888884 466566677788888888888654
Q ss_pred cCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCC-CCCEEEcccCCC
Q 004704 301 LSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLE-RLRILDISENRL 350 (735)
Q Consensus 301 l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l 350 (735)
++..-...|..+ . |+.+++.+|.+....+..|.+++ .++.+.+..+.+
T Consensus 334 l~~I~~~aF~~~-~-L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 VTQINFSAFNNT-G-IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCEECTTSSSSS-C-CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ccEEcHHhCCCC-C-CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 542334455555 4 88888888877766667777774 677887776643
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=9.7e-16 Score=145.28 Aligned_cols=114 Identities=27% Similarity=0.405 Sum_probs=102.8
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 613 (735)
++++.|++++|+++ .+|..|..+++|+.|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 46788999999998 78899999999999999999999888889999999999999999999988899999999999999
Q ss_pred ccCcCcccCCC-CCCCCccCCcccCCCCCCCCcccc
Q 004704 614 SYNNLSGRTPD-KGQFATFDESSYRGNPSLCAWLIQ 648 (735)
Q Consensus 614 s~N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~~~ 648 (735)
++|++++..+. ...+..+....+.+||+.|+|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 99999977664 455677788889999999988654
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=6.3e-15 Score=156.93 Aligned_cols=65 Identities=6% Similarity=0.055 Sum_probs=34.3
Q ss_pred cccCCCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECc
Q 004704 84 HVKTENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLK 151 (735)
Q Consensus 84 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 151 (735)
.++..+|..|.+|+.+.+.. .++.+...+|.+|++|+.+++..+ ++ .++...|.++++|+.+.+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc
Confidence 34455566666666666643 344444555666666666666533 33 4444445555555554443
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.1e-16 Score=143.07 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=56.2
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccC-cccccCcCCCCEEeCCCCcccccCC---ccccCCCCCC
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSI-PESFSNLKMIESLDISYNKLTGQIP---PQLTALNFLS 609 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~ 609 (735)
++|+.|++++|++++.+|..++.+++|+.|+|++|.+++.. +..++.+++|+.|++++|++++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 45555666666666555655666667777777777776432 2566777777777777777775444 3666777777
Q ss_pred eEEcccCcCccc
Q 004704 610 IFNVSYNNLSGR 621 (735)
Q Consensus 610 ~L~ls~N~l~~~ 621 (735)
+|++++|.+...
T Consensus 151 ~L~l~~n~~~~~ 162 (168)
T 2ell_A 151 YLDGYDREDQEA 162 (168)
T ss_dssp EETTEETTSCBC
T ss_pred EecCCCCChhhc
Confidence 777777766543
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.7e-16 Score=143.73 Aligned_cols=138 Identities=25% Similarity=0.268 Sum_probs=119.5
Q ss_pred CCCCcEEeCCCCccc-ccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccc
Q 004704 384 SCKLVTLNLRDNTFS-GRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVG 462 (735)
Q Consensus 384 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~ 462 (735)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 478999999999998 77888889999999999999999965 77899999999999999999777665543
Q ss_pred cCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECC
Q 004704 463 SDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLS 542 (735)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 542 (735)
+++|+.|+++
T Consensus 94 ----------------------------------------------------------------------l~~L~~L~Ls 103 (168)
T 2ell_A 94 ----------------------------------------------------------------------LPNLTHLNLS 103 (168)
T ss_dssp ----------------------------------------------------------------------CTTCCEEECB
T ss_pred ----------------------------------------------------------------------CCCCCEEecc
Confidence 2678889999
Q ss_pred CCcccCCC-CccccccccCCeEeCCCCcCcccCc---ccccCcCCCCEEeCCCCcccccCCcc
Q 004704 543 CNQLTGEI-PSDIGQLQAILALNLSNNSLSGSIP---ESFSNLKMIESLDISYNKLTGQIPPQ 601 (735)
Q Consensus 543 ~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~~~~p~~ 601 (735)
+|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++||+++|.+. .+|.+
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999532 2789999999999999999997665 58999999999999999998 56654
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=143.22 Aligned_cols=90 Identities=24% Similarity=0.281 Sum_probs=73.6
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 613 (735)
++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 45666777777777666677888888888889999988888888899999999999999998776777888999999999
Q ss_pred ccCcCcccCC
Q 004704 614 SYNNLSGRTP 623 (735)
Q Consensus 614 s~N~l~~~~p 623 (735)
++|++.+.+.
T Consensus 134 ~~N~~~C~c~ 143 (193)
T 2wfh_A 134 GANPLYCDCN 143 (193)
T ss_dssp CSSCEECSGG
T ss_pred CCCCeecCCc
Confidence 9999887554
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=8.1e-15 Score=156.12 Aligned_cols=329 Identities=14% Similarity=0.145 Sum_probs=169.4
Q ss_pred ccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeecccccccccccCCCCCC
Q 004704 13 ITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLP 92 (735)
Q Consensus 13 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 92 (735)
..+|.++++|+.+.|..+ ++.+-..+|.+|++|+.+++..+ ++ .++..+|.++++|+.+.+..+ ...+...+|..
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc--eeeecceeeec
Confidence 346667777777777533 55444556777777777777544 32 344456666666666655432 23334444544
Q ss_pred CCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEE
Q 004704 93 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHL 172 (735)
Q Consensus 93 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 172 (735)
+..+...... .+......+|.++++|+.+++.++- . .++...|.++.+|+.+.+..+ ++.+...+|..+..|+.+
T Consensus 139 ~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 139 CDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ccccccccCc--cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 4333222211 1122233445555555555554432 2 344444445555555555443 333334444444444444
Q ss_pred EccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCC
Q 004704 173 DISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNN 252 (735)
Q Consensus 173 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 252 (735)
.+..+.. .+.........|+.+.+.... + .+....+.++..++.+.+..+.
T Consensus 214 ~~~~~~~---------------------------~i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 214 EFPNSLY---------------------------YLGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp CCCTTCC---------------------------EECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTT
T ss_pred ecCCCce---------------------------EeehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCc
Confidence 4433321 112222333445555543321 1 2333444555666666665543
Q ss_pred CCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCc
Q 004704 253 FEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPV 332 (735)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~ 332 (735)
.. .....|..+..++.+....+.+. ...+..+.+|+.+.+..+ ++..-...+..+.. |+.+++..+ ++.....
T Consensus 265 ~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~-L~~i~lp~~-v~~I~~~ 337 (394)
T 4fs7_A 265 LR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS-LVSIDLPYL-VEEIGKR 337 (394)
T ss_dssp CE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT-CCEECCCTT-CCEECTT
T ss_pred ce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCC-CCEEEeCCc-ccEEhHH
Confidence 22 33445556666666655544322 234555666666666543 33122233444444 777776543 5545566
Q ss_pred cCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEE
Q 004704 333 QLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTL 390 (735)
Q Consensus 333 ~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 390 (735)
+|.+|.+|+.+++..+ ++......+ ++++|+.+++..+ ++ .+...|.+|++|+.+
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 7777777888777665 555555555 7778888877654 22 224567778777764
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.4e-15 Score=139.71 Aligned_cols=90 Identities=22% Similarity=0.231 Sum_probs=68.7
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 613 (735)
++|+.|++++|++++..+..++.+++|++|+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 45566777777776555555677888888888888888777777788888888888888888666666778888888888
Q ss_pred ccCcCcccCC
Q 004704 614 SYNNLSGRTP 623 (735)
Q Consensus 614 s~N~l~~~~p 623 (735)
++|+++|.+|
T Consensus 132 ~~N~~~~~~~ 141 (177)
T 2o6r_A 132 HTNPWDCSCP 141 (177)
T ss_dssp CSSCBCCCHH
T ss_pred cCCCeeccCc
Confidence 8888877665
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=8.3e-16 Score=139.46 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=54.5
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCccc-CcccccCcCCCCEEeCCCCcccccCC---ccccCCCCCC
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGS-IPESFSNLKMIESLDISYNKLTGQIP---PQLTALNFLS 609 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~~~~p---~~l~~l~~L~ 609 (735)
++|+.|++++|++++.+|..++.+++|++|++++|.+++. .|..++.+++|++|++++|++++..+ ..+..+++|+
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 4556666666666655666666677777777777777753 23667777777777777777776555 4667777777
Q ss_pred eEEcc
Q 004704 610 IFNVS 614 (735)
Q Consensus 610 ~L~ls 614 (735)
+||++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 77765
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.5e-14 Score=135.25 Aligned_cols=133 Identities=21% Similarity=0.237 Sum_probs=107.0
Q ss_pred CcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccccccCCc
Q 004704 387 LVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWRVGSDDV 466 (735)
Q Consensus 387 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 466 (735)
.+.+++++++++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK----------- 74 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence 467888888877 4554433 68889999999888766777888899999999999887554444433
Q ss_pred cCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEECCCCcc
Q 004704 467 LNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLDLSCNQL 546 (735)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 546 (735)
+++|+.|++++|++
T Consensus 75 ------------------------------------------------------------------l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 75 ------------------------------------------------------------------LTKLTILYLHENKL 88 (177)
T ss_dssp ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred ------------------------------------------------------------------CCccCEEECCCCCc
Confidence 35788899999999
Q ss_pred cCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCC
Q 004704 547 TGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIP 599 (735)
Q Consensus 547 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 599 (735)
++..+..++.+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 97777778999999999999999997777778999999999999999997654
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1.2e-14 Score=131.71 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=103.5
Q ss_pred cCcEEEcCCCcCC-CCCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcccccCcccccCCCCCcEEeCC
Q 004704 315 ELEILSMSKNHLE-GNVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLR 393 (735)
Q Consensus 315 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 393 (735)
+++.|++++|.++ +.+|..+..+++|++|++++|.+++. .....+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 3888888888887 66777778888888888888888766 444478888888888888887778877788999999999
Q ss_pred CCccccc-CChhhhCCCCccEEEccCCcCCCCCc---hhhhcCCCCCEEECcC
Q 004704 394 DNTFSGR-IPHQINEHSNLRFLLLGGNHLQGPIP---DQLCQLQKLAMMDLSR 442 (735)
Q Consensus 394 ~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~ 442 (735)
+|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9998853 34778889999999999999987655 5788899999998864
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.7e-16 Score=150.22 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=112.7
Q ss_pred ccCCCCCcEEeCCCCcccccCCh------hhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhh
Q 004704 381 LFRSCKLVTLNLRDNTFSGRIPH------QINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFA 454 (735)
Q Consensus 381 ~~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 454 (735)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34445666666666666666555 78888888888888888875 56 7888888888888888886 4454332
Q ss_pred cccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCccc
Q 004704 455 NVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVN 534 (735)
Q Consensus 455 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 534 (735)
. ++
T Consensus 91 ~-----------------------------------------------------------------------------~~ 93 (198)
T 1ds9_A 91 V-----------------------------------------------------------------------------AD 93 (198)
T ss_dssp H-----------------------------------------------------------------------------HH
T ss_pred c-----------------------------------------------------------------------------CC
Confidence 2 24
Q ss_pred ccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCc-ccccCcCCCCEEeCCCCcccccCCcc----------cc
Q 004704 535 RVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIP-ESFSNLKMIESLDISYNKLTGQIPPQ----------LT 603 (735)
Q Consensus 535 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~----------l~ 603 (735)
+|+.|++++|++++ +| .++.+++|+.|++++|.+++..+ ..+..+++|++|++++|++++.+|.. +.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 67778888888874 45 57888888888888888885333 46888888888888888888776653 77
Q ss_pred CCCCCCeEEcccCcCc
Q 004704 604 ALNFLSIFNVSYNNLS 619 (735)
Q Consensus 604 ~l~~L~~L~ls~N~l~ 619 (735)
.+++|+.|| +|+++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 788888876 55554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.6e-14 Score=133.53 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=67.5
Q ss_pred ccccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcc--cccCcCCCCEEeCCCCcccccCCcc----ccCCC
Q 004704 533 VNRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPE--SFSNLKMIESLDISYNKLTGQIPPQ----LTALN 606 (735)
Q Consensus 533 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~~----l~~l~ 606 (735)
+++|+.|++++|++++..|..++.+++|+.|+|++|.++ .+|. .++.+++|+.|++++|.++ .+|.. +..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 356777888888887544444588888899999999887 4555 7888899999999999988 45664 88889
Q ss_pred CCCeEEcccCcCcc
Q 004704 607 FLSIFNVSYNNLSG 620 (735)
Q Consensus 607 ~L~~L~ls~N~l~~ 620 (735)
+|++||+++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 99999999888754
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=7.8e-14 Score=129.16 Aligned_cols=91 Identities=23% Similarity=0.218 Sum_probs=75.6
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 613 (735)
+.++.|+|++|++++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45677888888888777888888888888888888888777777888888888888888888777777888888888888
Q ss_pred ccCcCcccCCC
Q 004704 614 SYNNLSGRTPD 624 (735)
Q Consensus 614 s~N~l~~~~p~ 624 (735)
++|++++.++.
T Consensus 110 ~~N~~~c~c~~ 120 (170)
T 3g39_A 110 LNNPWDCACSD 120 (170)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCCCCCchh
Confidence 88888876653
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3.3e-14 Score=132.76 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=86.8
Q ss_pred ccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcccccc
Q 004704 381 LFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANVLSWR 460 (735)
Q Consensus 381 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~ 460 (735)
+..+.+|+.|++++|+++ .+|......++|++|++++|.+++. +.+..+++|+.|++++|++++..|..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 445666677777777666 3343222233677777777777643 45666777777777777776443332232
Q ss_pred cccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccceeEEEEeccccccccCCcccccceEE
Q 004704 461 VGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERVEIEFAMKNRYEIYNGSNVNRVTGLD 540 (735)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 540 (735)
+++|+.|+
T Consensus 87 ------------------------------------------------------------------------l~~L~~L~ 94 (176)
T 1a9n_A 87 ------------------------------------------------------------------------LPDLTELI 94 (176)
T ss_dssp ------------------------------------------------------------------------CTTCCEEE
T ss_pred ------------------------------------------------------------------------CCCCCEEE
Confidence 24566677
Q ss_pred CCCCcccCCCCc--cccccccCCeEeCCCCcCcccCcc----cccCcCCCCEEeCCCCccc
Q 004704 541 LSCNQLTGEIPS--DIGQLQAILALNLSNNSLSGSIPE----SFSNLKMIESLDISYNKLT 595 (735)
Q Consensus 541 Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~LdLs~N~l~ 595 (735)
+++|+++ .+|. .++.+++|+.|++++|.++ .+|. .++.+++|+.||+++|.+.
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777775 4555 6777888888888888887 4555 3788888888888888765
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.1e-13 Score=128.15 Aligned_cols=108 Identities=23% Similarity=0.278 Sum_probs=97.8
Q ss_pred cceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEccc
Q 004704 536 VTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY 615 (735)
Q Consensus 536 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 615 (735)
.+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|+++++|++|||++|+|++..|..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467999999999 6887774 8999999999999998899999999999999999999988888889999999999999
Q ss_pred CcCcccCCC-CCCCCccCCcccCCCCCCCCcc
Q 004704 616 NNLSGRTPD-KGQFATFDESSYRGNPSLCAWL 646 (735)
Q Consensus 616 N~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~ 646 (735)
|++++..|. ...+..+....+.+||+.|.|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999988775 5667788888999999999875
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.2e-13 Score=126.48 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=81.3
Q ss_pred ceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEcccC
Q 004704 537 TGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSYN 616 (735)
Q Consensus 537 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N 616 (735)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++.+|..|+++++|++|||++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45788888886 6776664 77888888888888777778888888888888888888666666778888888888888
Q ss_pred cCcccCCC-CCCCCccCCcccCCCCCCCCcc
Q 004704 617 NLSGRTPD-KGQFATFDESSYRGNPSLCAWL 646 (735)
Q Consensus 617 ~l~~~~p~-~~~~~~~~~~~~~gN~~lc~~~ 646 (735)
+|++..|. ...+..+....+.+||+.|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88876664 4556667777788888887764
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.3e-13 Score=126.36 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=83.5
Q ss_pred cccceEECCCCcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEc
Q 004704 534 NRVTGLDLSCNQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNV 613 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~l 613 (735)
+.|+.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|.++++|++|||++|+|++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 46788999999999888999999999999999999999877777899999999999999999777777999999999999
Q ss_pred ccCcCcccCCC
Q 004704 614 SYNNLSGRTPD 624 (735)
Q Consensus 614 s~N~l~~~~p~ 624 (735)
++|++.+.++.
T Consensus 113 ~~N~~~c~~~~ 123 (174)
T 2r9u_A 113 YNNPWDCECRD 123 (174)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCccccccc
Confidence 99999987654
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.2e-15 Score=143.85 Aligned_cols=151 Identities=24% Similarity=0.265 Sum_probs=115.3
Q ss_pred CccEEEccCCcccccCc------ccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCC
Q 004704 362 SVEHLSLQKNALNGLIP------GELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKL 435 (735)
Q Consensus 362 ~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 435 (735)
.++.++++.+.+.+..| ..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 34444444444444443 378888999999999999985 66 8888899999999999998 677788888899
Q ss_pred CEEECcCCcCCCCCCchhhcccccccccCCccCCCCCCCcccchhhhcccCCCCCCCccccchhhhhhhhhhhhccccce
Q 004704 436 AMMDLSRNKFSGSIPPCFANVLSWRVGSDDVLNGSKLNSPELDEEIEFGSLGNNRSSNTMFGMWRWLSALEKRAAIDERV 515 (735)
Q Consensus 436 ~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (735)
+.|++++|++++ +| .+..
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~------------------------------------------------------------ 113 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEK------------------------------------------------------------ 113 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHH------------------------------------------------------------
T ss_pred CEEECcCCcCCc-CC-cccc------------------------------------------------------------
Confidence 999999999875 33 2322
Q ss_pred eEEEEeccccccccCCcccccceEECCCCcccCCCC-ccccccccCCeEeCCCCcCcccCccc----------ccCcCCC
Q 004704 516 EIEFAMKNRYEIYNGSNVNRVTGLDLSCNQLTGEIP-SDIGQLQAILALNLSNNSLSGSIPES----------FSNLKMI 584 (735)
Q Consensus 516 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L 584 (735)
+++|+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|.. +..+++|
T Consensus 114 -----------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 114 -----------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp -----------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred -----------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 2567889999999984222 46888999999999999998776653 8899999
Q ss_pred CEEeCCCCcccc
Q 004704 585 ESLDISYNKLTG 596 (735)
Q Consensus 585 ~~LdLs~N~l~~ 596 (735)
+.|| +|.++.
T Consensus 177 ~~Ld--~~~i~~ 186 (198)
T 1ds9_A 177 KKLD--GMPVDV 186 (198)
T ss_dssp SEEC--CGGGTT
T ss_pred EEEC--CcccCH
Confidence 9998 777763
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=1.2e-11 Score=131.38 Aligned_cols=123 Identities=11% Similarity=0.141 Sum_probs=70.1
Q ss_pred CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 394 (735)
Q Consensus 316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 394 (735)
|+.+.+..+... ....+|.+++.|+.+.+. +.+.......| ++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred ccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 666666544322 445566666677777664 33444444445 6677777777543 4445566777777888877765
Q ss_pred CcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcC
Q 004704 395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKF 445 (735)
Q Consensus 395 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 445 (735)
+ ++.....+|.+|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 344 s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 344 S-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp T-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred c-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 4 55455567777888888887776543 13566677777777766544
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=7.9e-12 Score=132.92 Aligned_cols=331 Identities=11% Similarity=0.144 Sum_probs=183.8
Q ss_pred ccccCCCC-CCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCc---ccccCChhhhhcCCCCCeeecccccccccccCC
Q 004704 13 ITCLKNLT-RLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN---FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTE 88 (735)
Q Consensus 13 ~~~~~~l~-~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 88 (735)
..+|.+++ .|+.+.+..+ ++.+-..+|.+|++|+.+.++.|. ++ .+...+|.++.+|+.+.+..+ ...++..
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~ 131 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS--VTEIDSE 131 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT--CSEECTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc--cceehhh
Confidence 45677774 5888888754 665666788888888888887653 33 355567888888887776543 3456666
Q ss_pred CCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCC
Q 004704 89 NWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDF 168 (735)
Q Consensus 89 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 168 (735)
+|..+.+|+.+.+.. .+......+|..+..|+.+.+..+ ++ .+....| ....|+.+.+..+ ++.+...+|..+..
T Consensus 132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF-~~~~l~~i~ip~~-~~~i~~~af~~c~~ 206 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF-TGTALTQIHIPAK-VTRIGTNAFSECFA 206 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT-TTCCCSEEEECTT-CCEECTTTTTTCTT
T ss_pred hhhhhcccccccccc-eeeeecccceecccccccccccce-ee-Eeccccc-cccceeEEEECCc-ccccccchhhhccc
Confidence 777788888888764 344445566777778888877654 33 4555555 3456777777654 23334456667777
Q ss_pred cCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEc
Q 004704 169 LHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDL 248 (735)
Q Consensus 169 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 248 (735)
++......+... .+...++........- ...+.....+..+.+... ++ .+....|.+|..|+.+.+
T Consensus 207 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 207 LSTITSDSESYP-AIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKM 272 (394)
T ss_dssp CCEEEECCSSSC-BSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEEC
T ss_pred cceecccccccc-cccceeeccccccccc-----------ccccccccccceEEcCCc-ce-EcccceeeecccccEEec
Confidence 777666554433 2222221110000000 001112223333433322 11 334445566666777766
Q ss_pred cCCCCCCcCcccccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCC
Q 004704 249 SNNNFEGQFFSEYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEG 328 (735)
Q Consensus 249 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 328 (735)
..+.. .....+|.++++|+.+.+. +.++.....+|..+.+|+.+++..+ ++..-...|..+.+ |+.+.+..+ ++.
T Consensus 273 p~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~-L~~i~ip~s-v~~ 347 (394)
T 4gt6_A 273 PDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ-LERIAIPSS-VTK 347 (394)
T ss_dssp CTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT-CCEEEECTT-CCB
T ss_pred ccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC-CCEEEECcc-cCE
Confidence 54433 2444566667777777665 3344344456666777777777543 33122334445544 777777544 554
Q ss_pred CCCccCCCCCCCCEEEcccCCCCccCCCccCCCCccEEEccCCcc
Q 004704 329 NVPVQLNNLERLRILDISENRLSGPIASSLNLSSVEHLSLQKNAL 373 (735)
Q Consensus 329 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l 373 (735)
....+|.+|++|+.+++.++.... ...+.+.+|+.+.+..+.+
T Consensus 348 I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 348 IPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred EhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 556677777788888777764321 2233566677776655443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=2.3e-12 Score=134.77 Aligned_cols=108 Identities=21% Similarity=0.248 Sum_probs=90.2
Q ss_pred eEECCCC-cccCCCCccccccccCCeEeCCC-CcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEEccc
Q 004704 538 GLDLSCN-QLTGEIPSDIGQLQAILALNLSN-NSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFNVSY 615 (735)
Q Consensus 538 ~LdLs~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~ 615 (735)
.++++++ +++ .+|. ++.+++|+.|+|++ |.|++..|..|+++++|+.|||++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4788888 888 5888 88899999999996 999988888899999999999999999988888899999999999999
Q ss_pred CcCcccCCCCCCCCccCCcccCCCCCCCCccc
Q 004704 616 NNLSGRTPDKGQFATFDESSYRGNPSLCAWLI 647 (735)
Q Consensus 616 N~l~~~~p~~~~~~~~~~~~~~gN~~lc~~~~ 647 (735)
|+|++..|.......+....+.+|++.|+|.+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence 99987776643333477778889999988754
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=2e-11 Score=127.50 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=81.3
Q ss_pred cccceEECCC-CcccCCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCcccccCCccccCCCCCCeEE
Q 004704 534 NRVTGLDLSC-NQLTGEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLTGQIPPQLTALNFLSIFN 612 (735)
Q Consensus 534 ~~L~~LdLs~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 612 (735)
++|+.|+|++ |++++..|..|+.+++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 5688899996 999988888999999999999999999999999999999999999999999987777777777 99999
Q ss_pred cccCcCcccCC
Q 004704 613 VSYNNLSGRTP 623 (735)
Q Consensus 613 ls~N~l~~~~p 623 (735)
+++|++.+.++
T Consensus 110 l~~N~~~c~c~ 120 (347)
T 2ifg_A 110 LSGNPLHCSCA 120 (347)
T ss_dssp CCSSCCCCCGG
T ss_pred eeCCCccCCCc
Confidence 99999987654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=5.6e-13 Score=139.72 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=32.7
Q ss_pred CCCCCCCEEECCCccccCccc---hhhhhCCCCCCEEEccCCCCCCc----CcccccCCCCCCEEEccccccCcc
Q 004704 213 GEMKELSLLDLSRNYFSGGLS---QSVVTGCFSLELLDLSNNNFEGQ----FFSEYMNLTRLRHLYFENNNFSGK 280 (735)
Q Consensus 213 ~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 280 (735)
...++|++|+|++|.+++... ...+..+++|++|+|++|.+++. ++..+...++|++|+|++|.++..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 444555555555555542111 11123344566666666655532 222333455666666666666543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=9.2e-13 Score=138.04 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=79.7
Q ss_pred CCCcEEECcCCcCcccCcCCc----C-CCCCcCEEEccCCcCCCcCChhHHHhcccCcEEECcCCcCCCCCCccc-----
Q 004704 143 PKLEVLLLKNNSFSGILQLPK----A-KHDFLHHLDISCNNFRGKLPHNMGVILQKLMYMDISKNCFEGNIPYSA----- 212 (735)
Q Consensus 143 ~~L~~L~L~~n~l~~~~~~~~----~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----- 212 (735)
+.|++|++++|.++......+ . ..++|++|+|++|.+++.....+...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555443221111 1 235677777777776544444445455677777777777654322222
Q ss_pred CCCCCCCEEECCCccccCccchh---hhhCCCCCCEEEccCCCCCCcC----cccccCCCCCCEEEccccccCcc----c
Q 004704 213 GEMKELSLLDLSRNYFSGGLSQS---VVTGCFSLELLDLSNNNFEGQF----FSEYMNLTRLRHLYFENNNFSGK----I 281 (735)
Q Consensus 213 ~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~ 281 (735)
...++|++|+|++|.++...... .+..+++|++|+|++|.+++.. +..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 23466777777777665311111 1234556666666666655321 23334444555555555555422 1
Q ss_pred cccccCCCCCCEEEeeCCccC
Q 004704 282 KDGLLSSTSLQVLDISNNMLS 302 (735)
Q Consensus 282 ~~~l~~~~~L~~L~l~~n~l~ 302 (735)
...+...++|++|++++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 122223344445555444444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=2.2e-09 Score=113.37 Aligned_cols=136 Identities=10% Similarity=0.088 Sum_probs=63.8
Q ss_pred CcEEEcCCCcCCCCCCccCCCCCCCCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCC
Q 004704 316 LEILSMSKNHLEGNVPVQLNNLERLRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRD 394 (735)
Q Consensus 316 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 394 (735)
++.+.+..+ +......+|.++..|+.+.+..+ ++......+ ++.+|+.+.+..+ +.......|.+|.+|+.+.+.+
T Consensus 219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN 295 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred cceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccc
Confidence 444444332 22233344455555555555433 332223333 4555555555332 3333344555555666666555
Q ss_pred CcccccCChhhhCCCCccEEEccCCcCCCCCchhhhcCCCCCEEECcCCcCCCCCCchhhcc
Q 004704 395 NTFSGRIPHQINEHSNLRFLLLGGNHLQGPIPDQLCQLQKLAMMDLSRNKFSGSIPPCFANV 456 (735)
Q Consensus 395 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 456 (735)
+.++.....+|.+|.+|+.+++..+ ++.+-..+|.+|++|+.+.+..+ ++..-..+|.++
T Consensus 296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 296 SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 5555444455555666666665433 33233445556666666555433 332333344443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=1.1e-08 Score=108.16 Aligned_cols=304 Identities=10% Similarity=0.060 Sum_probs=203.5
Q ss_pred hhhhCCCCCCEEEccCCcCcccCchHHHhCCCCCcEEECcCCcCcccCcCCcCCCCCcCEEEccCCcCCCcCChhHHHhc
Q 004704 112 DFLLHQYHLKYLDLSHNKLVGNFPTWLLRNNPKLEVLLLKNNSFSGILQLPKAKHDFLHHLDISCNNFRGKLPHNMGVIL 191 (735)
Q Consensus 112 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 191 (735)
.++....+|+.+.+... ++ .+++..|.+|.+|+.+.+..+ ++.+...+|..+ +|+.+.+..+ ++ .+....|..+
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC
T ss_pred cccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC
Confidence 45666778999988753 65 788888889999999999754 777777788877 6888877654 44 5666666644
Q ss_pred ccCcEEECcCCcCCCCCCcccCCCCCCCEEECCCccccCccchhhhhCCCCCCEEEccCCCCCC------------cCcc
Q 004704 192 QKLMYMDISKNCFEGNIPYSAGEMKELSLLDLSRNYFSGGLSQSVVTGCFSLELLDLSNNNFEG------------QFFS 259 (735)
Q Consensus 192 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~ 259 (735)
+|+.+.+..+ +.......+.. .+++.+.+..+ ++ .+....+..+..++.+.+..+.... ....
T Consensus 114 -~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 114 -DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp -CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred -CcccccCCCc-ccccccccccc-ceeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceec
Confidence 7898888765 33122333443 35666666544 22 4455556678888888776554321 1222
Q ss_pred cccCCCCCCEEEccccccCccccccccCCCCCCEEEeeCCccCCCCCchhhhhcccCcEEEcCCCcCCCCCCccCCCCCC
Q 004704 260 EYMNLTRLRHLYFENNNFSGKIKDGLLSSTSLQVLDISNNMLSGHIPHWMGNFSSELEILSMSKNHLEGNVPVQLNNLER 339 (735)
Q Consensus 260 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 339 (735)
.+.....+....+...... .....+.....|+.+.+..+ +.......+..+.. |+.+.+..+ ++.....+|.++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSS-CCEEEECTT-CCEECTTTTTTCTT
T ss_pred cccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCcc-ceEEEcCCC-ccEeCccccceeeh
Confidence 3444555666655443322 34455667778888887654 33122334455555 888888776 55566778888889
Q ss_pred CCEEEcccCCCCccCCCcc-CCCCccEEEccCCcccccCcccccCCCCCcEEeCCCCcccccCChhhhCCCCccEEEccC
Q 004704 340 LRILDISENRLSGPIASSL-NLSSVEHLSLQKNALNGLIPGELFRSCKLVTLNLRDNTFSGRIPHQINEHSNLRFLLLGG 418 (735)
Q Consensus 340 L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 418 (735)
|+.+.+..+ +.......+ ++.+|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 999988654 444444555 7889999999888888777788889999999999765 6655667888899999888865
Q ss_pred CcCCCCCchhhhcCC
Q 004704 419 NHLQGPIPDQLCQLQ 433 (735)
Q Consensus 419 n~l~~~~~~~~~~l~ 433 (735)
+ ++.+-..+|.+++
T Consensus 343 ~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 343 S-ITLIESGAFEGSS 356 (379)
T ss_dssp T-CCEECTTTTTTSS
T ss_pred c-cCEEchhHhhCCC
Confidence 5 4434456676654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=3.8e-09 Score=109.54 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=57.7
Q ss_pred CCCCcCEEEccCCcCCCcCChhHHH--hcccCcEEECcCCcCCCC----CCcccCCCCCCCEEECCCccccCccchhhhh
Q 004704 165 KHDFLHHLDISCNNFRGKLPHNMGV--ILQKLMYMDISKNCFEGN----IPYSAGEMKELSLLDLSRNYFSGGLSQSVVT 238 (735)
Q Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 238 (735)
.+++|++|++++|.+.+..+..++. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 4678888888888776444444442 367889999988888753 3344456789999999999887443333322
Q ss_pred CCCCCCEEEccCCC
Q 004704 239 GCFSLELLDLSNNN 252 (735)
Q Consensus 239 ~l~~L~~L~L~~n~ 252 (735)
.+ ...++++.+.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 12 4668888876
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=9.6e-09 Score=106.47 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=57.7
Q ss_pred CeeEEEeeCCCCCC-C-------CchhhhCCCCCCEEEccCCcCc---------ccCchHHHhCCCCCcEEECcCCcCcc
Q 004704 95 QLIVLGLTKCNLNG-S-------YPDFLLHQYHLKYLDLSHNKLV---------GNFPTWLLRNNPKLEVLLLKNNSFSG 157 (735)
Q Consensus 95 ~L~~L~L~~n~l~~-~-------~~~~l~~l~~L~~L~Ls~n~l~---------~~~p~~~~~~l~~L~~L~L~~n~l~~ 157 (735)
.++.|.+......+ . +..+...+++|+.|.+.++... +.+. .+...+|+|+.|.+++|.-..
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce
Confidence 45666666554431 1 1233456778888888655321 1233 334577888888888773111
Q ss_pred cCcCCcCCCCCcCEEEccCCcCCCcCChhHHH-hcccCcEEECc
Q 004704 158 ILQLPKAKHDFLHHLDISCNNFRGKLPHNMGV-ILQKLMYMDIS 200 (735)
Q Consensus 158 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~ 200 (735)
. + .+ .+++|++|++..+.+.......+.. .+++|++|+|+
T Consensus 187 l-~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 187 I-G-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp C-C-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred e-c-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 1 1 12 3678888888877665332223332 35777777764
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=5.7e-08 Score=90.75 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=69.5
Q ss_pred ccccCCCCCCCEEeCCCC-cCCCC----cchhhhCCCCCCEEeCCCCcccccCC---hhhhhcCCCCCeeeccccccccc
Q 004704 13 ITCLKNLTRLKILDISSN-QLNGS----LPSVISNLTSLEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNNTLH 84 (735)
Q Consensus 13 ~~~~~~l~~L~~L~Ls~n-~i~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~ 84 (735)
...+...+.|++|+|++| .+... +..++...++|++|+|++|.+.+.-. ...+...+.|++|+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~--------- 99 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN--------- 99 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE---------
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE---------
Confidence 345667778888888887 77642 34455667778888888887753211 12233344455554
Q ss_pred ccCCCCCCCCCeeEEEeeCCCCCCC----CchhhhCCCCCCEEEc--cCCcCcccCch---HHHhCCCCCcEEECcCCcC
Q 004704 85 VKTENWLPTSQLIVLGLTKCNLNGS----YPDFLLHQYHLKYLDL--SHNKLVGNFPT---WLLRNNPKLEVLLLKNNSF 155 (735)
Q Consensus 85 ~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~~p~---~~~~~l~~L~~L~L~~n~l 155 (735)
|++|.+... +..++...++|++|+| ++|.+...... ......++|++|++++|.+
T Consensus 100 ----------------L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 100 ----------------VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp ----------------CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred ----------------CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 455554432 3445566667777777 66777533211 1223456777777777766
Q ss_pred c
Q 004704 156 S 156 (735)
Q Consensus 156 ~ 156 (735)
.
T Consensus 164 ~ 164 (185)
T 1io0_A 164 G 164 (185)
T ss_dssp H
T ss_pred C
Confidence 4
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=2.5e-07 Score=90.74 Aligned_cols=64 Identities=27% Similarity=0.351 Sum_probs=27.9
Q ss_pred cccceEECCCCcccC--CCCccccccccCCeEeCCCCcCcccCcccccCcC--CCCEEeCCCCcccccCC
Q 004704 534 NRVTGLDLSCNQLTG--EIPSDIGQLQAILALNLSNNSLSGSIPESFSNLK--MIESLDISYNKLTGQIP 599 (735)
Q Consensus 534 ~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~~~~p 599 (735)
+.|+.|+|++|++++ .+|..++.+++|+.|+|++|+|++. +.+..++ +|++|+|++|.+.+.+|
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 444445555555443 2233344444455555555544432 1122222 44444444444444333
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.1e-07 Score=93.30 Aligned_cols=89 Identities=21% Similarity=0.272 Sum_probs=67.5
Q ss_pred cccce--EECCCCccc---CCCCccccccccCCeEeCCCCcCcc--cCcccccCcCCCCEEeCCCCcccccCCccccCCC
Q 004704 534 NRVTG--LDLSCNQLT---GEIPSDIGQLQAILALNLSNNSLSG--SIPESFSNLKMIESLDISYNKLTGQIPPQLTALN 606 (735)
Q Consensus 534 ~~L~~--LdLs~N~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 606 (735)
+.|.. ++++.|... +.++....++++|++|+|++|+|++ .+|..++.+++|+.|||++|++++. ..+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 218 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK 218 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence 34444 677777433 2222223568899999999999998 4567788999999999999999975 3445555
Q ss_pred --CCCeEEcccCcCcccCCC
Q 004704 607 --FLSIFNVSYNNLSGRTPD 624 (735)
Q Consensus 607 --~L~~L~ls~N~l~~~~p~ 624 (735)
.|++|+|++|++++.+|.
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSS
T ss_pred cCCcceEEccCCcCccccCc
Confidence 999999999999987763
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=2.6e-07 Score=86.24 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=70.1
Q ss_pred CCCCCCCCEEEcccC-CCCccCCC----cc-CCCCccEEEccCCccccc----CcccccCCCCCcEEeCCCCccccc---
Q 004704 334 LNNLERLRILDISEN-RLSGPIAS----SL-NLSSVEHLSLQKNALNGL----IPGELFRSCKLVTLNLRDNTFSGR--- 400 (735)
Q Consensus 334 l~~l~~L~~L~L~~n-~l~~~~~~----~~-~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~--- 400 (735)
+...+.|++|+|++| .+...... .. ..++|++|+|++|.+... +...+...++|++|+|++|.|...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334455555555555 44321111 11 345566666666665432 233445567788888888888753
Q ss_pred -CChhhhCCCCccEEEc--cCCcCCCC----CchhhhcCCCCCEEECcCCcCC
Q 004704 401 -IPHQINEHSNLRFLLL--GGNHLQGP----IPDQLCQLQKLAMMDLSRNKFS 446 (735)
Q Consensus 401 -~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 446 (735)
+...+...++|++|+| ++|.+... +...+...+.|+.|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456666778888888 77888743 3455666788999999998875
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=4.2e-06 Score=75.86 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=49.5
Q ss_pred CCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCCCc-ccccCChhhhhcCCCCCeeecccccccccccCCCCCCCCCeeE
Q 004704 20 TRLKILDISSNQLNGSLPSVISNLTSLEYLDLSHNN-FEGMFPLSSLANHSKLEGLLLSTRNNTLHVKTENWLPTSQLIV 98 (735)
Q Consensus 20 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 98 (735)
.+|++|||+++.|+..--..+.+|++|++|+|++|. +++.- ...+..++ ..+++|++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~---------------------~~~~~L~~ 118 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLE---------------------NLQKSMLE 118 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCH---------------------HHHHHCCE
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcc---------------------cccCCCCE
Confidence 345666666665554444445555666666665553 33210 01111110 00236777
Q ss_pred EEeeCCC-CCCCCchhhhCCCCCCEEEccCCc
Q 004704 99 LGLTKCN-LNGSYPDFLLHQYHLKYLDLSHNK 129 (735)
Q Consensus 99 L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~ 129 (735)
|+|++|. ++...-..+.++++|++|+++++.
T Consensus 119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 7777774 766555667788888899888875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=9.8e-06 Score=73.41 Aligned_cols=86 Identities=8% Similarity=-0.053 Sum_probs=61.9
Q ss_pred CCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCCc-CcccCchHHHhC---CCCCcEEECcCCc-CcccCcCCcCCCC
Q 004704 93 TSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHNK-LVGNFPTWLLRN---NPKLEVLLLKNNS-FSGILQLPKAKHD 167 (735)
Q Consensus 93 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~---l~~L~~L~L~~n~-l~~~~~~~~~~~~ 167 (735)
..+|++|++++|.++...-..+..+++|++|+|++|. +++..-..+... +++|++|++++|. ++...-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3479999999999887777778889999999999985 664433333311 2468888888874 7654444556678
Q ss_pred CcCEEEccCCc
Q 004704 168 FLHHLDISCNN 178 (735)
Q Consensus 168 ~L~~L~Ls~n~ 178 (735)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888775
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.08 E-value=0.00025 Score=65.42 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=57.3
Q ss_pred cCCCCCCCEEeCCCC-cCCC----CcchhhhCCCCCCEEeCCCCcccccCC---hhhhhcCCCCCeeecccccccccccC
Q 004704 16 LKNLTRLKILDISSN-QLNG----SLPSVISNLTSLEYLDLSHNNFEGMFP---LSSLANHSKLEGLLLSTRNNTLHVKT 87 (735)
Q Consensus 16 ~~~l~~L~~L~Ls~n-~i~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~ 87 (735)
+.+-+.|++|+|++| +|.. .+.+++..-+.|+.|+|++|+|.+.-. ...+..-+.|++|+|++|.+......
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344556777777764 5542 233445556667777777776642211 12233344455555444443322211
Q ss_pred CCCCCCCCeeEEEeeCCCCCCCCchhhhCCCCCCEEEccCC---cCccc----CchHHHhCCCCCcEEECcCCcC
Q 004704 88 ENWLPTSQLIVLGLTKCNLNGSYPDFLLHQYHLKYLDLSHN---KLVGN----FPTWLLRNNPKLEVLLLKNNSF 155 (735)
Q Consensus 88 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n---~l~~~----~p~~~~~~l~~L~~L~L~~n~l 155 (735)
.+.+++..-+.|++|+|++| .+... +.+. ...-+.|+.|+++.|.+
T Consensus 117 ---------------------ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 ---------------------RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFASM 169 (197)
T ss_dssp ---------------------HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCCH
T ss_pred ---------------------HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCCc
Confidence 12334445555666666644 22211 1122 23455677777665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.06 E-value=0.00092 Score=57.61 Aligned_cols=37 Identities=27% Similarity=0.200 Sum_probs=18.7
Q ss_pred CCEEeCCCCcccccCCccccCCCCCCeEEcccCcCcc
Q 004704 584 IESLDISYNKLTGQIPPQLTALNFLSIFNVSYNNLSG 620 (735)
Q Consensus 584 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 620 (735)
|+.|||++|+|+...+..|..+++|+.|+|++|++.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4445555555554444444555555555555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.98 E-value=0.0012 Score=56.82 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=42.7
Q ss_pred ceEECCCCccc-CCCCccccccccCCeEeCCCCcCcccCcccccCcCCCCEEeCCCCccc
Q 004704 537 TGLDLSCNQLT-GEIPSDIGQLQAILALNLSNNSLSGSIPESFSNLKMIESLDISYNKLT 595 (735)
Q Consensus 537 ~~LdLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 595 (735)
..+|.++++++ ..+|..+. .+|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35888888886 35665543 36888888888888766777888888888888888765
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.82 E-value=0.00056 Score=63.12 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=17.4
Q ss_pred ccCcEEECcCC-cCCC----CCCcccCCCCCCCEEECCCcccc
Q 004704 192 QKLMYMDISKN-CFEG----NIPYSAGEMKELSLLDLSRNYFS 229 (735)
Q Consensus 192 ~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 229 (735)
+.|++|+|++| .+.. .+...+..-+.|+.|+|++|.+.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 34555555553 4432 12223344445555555555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.02 E-value=5.6 Score=31.73 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=26.9
Q ss_pred CCCCccccccCCCCCCCEEeCCCCcCCCCcchhhhCCCCCCEEeCCC
Q 004704 7 FIGSPLITCLKNLTRLKILDISSNQLNGSLPSVISNLTSLEYLDLSH 53 (735)
Q Consensus 7 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~Ls~ 53 (735)
.++.+-..+|.+|++|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445566666666666666654 3334455666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.61 E-value=20 Score=28.36 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=29.6
Q ss_pred CcCCCCcchhhhCCCCCCEEeCCCCcccccCChhhhhcCCCCCeeeccc
Q 004704 30 NQLNGSLPSVISNLTSLEYLDLSHNNFEGMFPLSSLANHSKLEGLLLST 78 (735)
Q Consensus 30 n~i~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 78 (735)
..++.+-..+|.+|++|+.+.+..+ ++ .+...+|.+|.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 3455555667888888888877654 22 34445666777777666654
No 167
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=25.96 E-value=51 Score=20.91 Aligned_cols=6 Identities=17% Similarity=0.113 Sum_probs=2.3
Q ss_pred hHHHHH
Q 004704 689 GASYVT 694 (735)
Q Consensus 689 ~~~~~~ 694 (735)
+.|+++
T Consensus 20 v~Gv~l 25 (41)
T 2k9y_A 20 AVGVVL 25 (41)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 334433
No 168
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=20.80 E-value=43 Score=23.77 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHhhhh
Q 004704 688 FGASYVTVILVLIAIL 703 (735)
Q Consensus 688 ~~~~~~~~~~~~~~~~ 703 (735)
++.++.+++++.++++
T Consensus 14 lGg~~~lll~~glcI~ 29 (70)
T 2klu_A 14 LGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3334434444444444
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.54 E-value=50 Score=20.75 Aligned_cols=9 Identities=0% Similarity=-0.363 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 004704 688 FGASYVTVI 696 (735)
Q Consensus 688 ~~~~~~~~~ 696 (735)
++++.++++
T Consensus 16 iVvG~v~gv 24 (38)
T 2k1k_A 16 VIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHH
T ss_pred eehHHHHHH
Confidence 334443333
Done!