Query 004707
Match_columns 734
No_of_seqs 850 out of 5133
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 11:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.3E-80 5E-85 757.8 55.7 661 1-720 296-1100(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 3.9E-50 8.5E-55 467.3 18.5 453 1-476 261-787 (889)
3 PLN00113 leucine-rich repeat r 99.9 4.9E-25 1.1E-29 270.0 14.9 271 225-496 209-522 (968)
4 PF00931 NB-ARC: NB-ARC domain 99.9 1.3E-25 2.8E-30 236.1 8.4 170 1-170 101-280 (287)
5 PLN00113 leucine-rich repeat r 99.9 4.3E-25 9.4E-30 270.5 14.1 275 221-496 253-546 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.6E-23 3.4E-28 222.0 -2.5 264 202-476 83-379 (1255)
7 KOG4194 Membrane glycoprotein 99.8 6.5E-21 1.4E-25 201.5 4.1 237 213-451 87-330 (873)
8 KOG0444 Cytoskeletal regulator 99.8 6.6E-22 1.4E-26 209.8 -3.9 229 220-456 47-285 (1255)
9 KOG4194 Membrane glycoprotein 99.8 2E-20 4.3E-25 197.8 2.3 250 220-470 141-403 (873)
10 PLN03210 Resistant to P. syrin 99.8 2.4E-18 5.2E-23 211.9 19.1 243 223-476 629-910 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 2.1E-21 4.5E-26 197.1 -7.5 204 220-429 106-309 (565)
12 PRK15387 E3 ubiquitin-protein 99.8 1.1E-17 2.4E-22 192.1 17.7 265 230-536 203-467 (788)
13 PRK15387 E3 ubiquitin-protein 99.7 5.6E-17 1.2E-21 186.4 16.0 236 229-496 223-468 (788)
14 KOG0472 Leucine-rich repeat pr 99.7 6.1E-20 1.3E-24 186.5 -9.1 223 222-451 62-288 (565)
15 PRK15370 E3 ubiquitin-protein 99.7 9.2E-17 2E-21 185.7 11.7 223 230-476 180-404 (754)
16 PRK15370 E3 ubiquitin-protein 99.7 1.5E-16 3.3E-21 184.0 10.6 221 229-471 200-427 (754)
17 KOG0617 Ras suppressor protein 99.7 2.1E-18 4.5E-23 156.3 -5.0 152 250-428 31-184 (264)
18 KOG0617 Ras suppressor protein 99.6 1.1E-17 2.3E-22 151.7 -5.5 147 316-469 49-200 (264)
19 KOG0618 Serine/threonine phosp 99.6 7.6E-17 1.6E-21 179.7 -3.0 236 230-470 243-487 (1081)
20 KOG0618 Serine/threonine phosp 99.6 1.3E-16 2.8E-21 177.9 -2.3 214 252-470 241-463 (1081)
21 KOG4237 Extracellular matrix p 99.5 5.6E-16 1.2E-20 157.9 -3.8 219 232-450 71-358 (498)
22 cd00116 LRR_RI Leucine-rich re 99.5 7.9E-15 1.7E-19 156.6 2.7 205 224-429 19-262 (319)
23 cd00116 LRR_RI Leucine-rich re 99.5 9.1E-15 2E-19 156.1 2.0 237 233-471 3-290 (319)
24 KOG0532 Leucine-rich repeat (L 99.2 8.4E-13 1.8E-17 140.6 -3.1 195 227-428 74-271 (722)
25 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4.2E-16 134.5 5.6 179 249-432 113-292 (394)
26 KOG4658 Apoptotic ATPase [Sign 99.2 3.1E-11 6.6E-16 142.3 6.6 250 224-477 567-847 (889)
27 KOG4237 Extracellular matrix p 99.1 4.7E-12 1E-16 129.6 -1.7 209 219-429 82-358 (498)
28 KOG0532 Leucine-rich repeat (L 99.1 2.4E-12 5.3E-17 137.2 -4.4 209 233-449 55-271 (722)
29 COG4886 Leucine-rich repeat (L 99.1 1.7E-10 3.7E-15 127.1 8.0 197 256-456 97-295 (394)
30 KOG3207 Beta-tubulin folding c 99.0 3.2E-11 6.9E-16 125.2 0.3 180 226-429 119-313 (505)
31 KOG3207 Beta-tubulin folding c 99.0 4.9E-11 1.1E-15 123.9 1.2 187 222-431 140-340 (505)
32 KOG1259 Nischarin, modulator o 99.0 1.8E-10 4E-15 113.9 1.3 203 244-452 206-413 (490)
33 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.8E-15 113.3 0.6 182 221-431 207-413 (490)
34 PF14580 LRR_9: Leucine-rich r 98.9 9.2E-10 2E-14 104.9 2.6 56 370-425 87-148 (175)
35 PF14580 LRR_9: Leucine-rich r 98.8 2.7E-09 5.9E-14 101.7 3.9 105 322-430 18-126 (175)
36 KOG1909 Ran GTPase-activating 98.8 1.1E-09 2.4E-14 111.1 -0.7 201 250-451 28-283 (382)
37 PLN03150 hypothetical protein; 98.7 4.3E-08 9.4E-13 113.5 8.4 89 254-342 420-510 (623)
38 KOG1909 Ran GTPase-activating 98.6 2.3E-09 5E-14 108.8 -2.9 222 228-450 30-310 (382)
39 PLN03150 hypothetical protein; 98.6 5.1E-08 1.1E-12 112.9 7.4 105 229-333 419-525 (623)
40 PRK15386 type III secretion pr 98.6 2.2E-07 4.7E-12 99.2 9.6 158 295-471 48-212 (426)
41 PRK15386 type III secretion pr 98.5 4.8E-07 1E-11 96.6 9.9 32 394-427 156-187 (426)
42 KOG0531 Protein phosphatase 1, 98.4 5.2E-08 1.1E-12 107.7 -0.1 197 226-431 70-269 (414)
43 PF13855 LRR_8: Leucine rich r 98.4 2.6E-07 5.7E-12 72.2 3.8 59 371-429 1-61 (61)
44 PF13855 LRR_8: Leucine rich r 98.3 4.4E-07 9.6E-12 71.0 3.3 58 277-334 2-60 (61)
45 KOG0531 Protein phosphatase 1, 98.3 1.4E-07 3.1E-12 104.3 0.2 197 224-430 91-290 (414)
46 KOG2120 SCF ubiquitin ligase, 98.2 2.4E-08 5.3E-13 99.1 -8.4 58 254-311 187-246 (419)
47 KOG1859 Leucine-rich repeat pr 98.1 5.3E-08 1.1E-12 107.1 -7.3 126 277-407 165-292 (1096)
48 KOG1859 Leucine-rich repeat pr 98.1 3.3E-08 7.2E-13 108.7 -9.6 124 301-429 166-291 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.1 1.7E-07 3.7E-12 93.3 -4.5 175 229-428 186-374 (419)
50 PF12799 LRR_4: Leucine Rich r 97.9 9.1E-06 2E-10 58.5 3.4 39 372-410 2-40 (44)
51 KOG2982 Uncharacterized conser 97.9 5.3E-06 1.2E-10 82.8 2.7 83 274-356 69-156 (418)
52 PRK04841 transcriptional regul 97.9 0.00014 3.1E-09 89.1 15.4 193 2-206 122-334 (903)
53 COG5238 RNA1 Ran GTPase-activa 97.9 4.3E-06 9.3E-11 82.4 1.2 181 249-430 27-255 (388)
54 KOG2982 Uncharacterized conser 97.8 1.3E-05 2.9E-10 80.1 3.1 186 250-435 69-267 (418)
55 KOG4579 Leucine-rich repeat (L 97.7 1.6E-06 3.5E-11 76.9 -3.7 103 327-430 31-136 (177)
56 KOG4341 F-box protein containi 97.6 3E-06 6.5E-11 88.4 -4.3 202 250-451 188-414 (483)
57 PF12799 LRR_4: Leucine Rich r 97.6 7.3E-05 1.6E-09 53.8 3.9 37 394-430 1-37 (44)
58 KOG4579 Leucine-rich repeat (L 97.4 4.9E-06 1.1E-10 73.9 -4.9 110 277-412 28-141 (177)
59 KOG3665 ZYG-1-like serine/thre 97.3 6.4E-05 1.4E-09 87.3 1.0 105 229-334 123-231 (699)
60 KOG3665 ZYG-1-like serine/thre 97.3 0.00012 2.5E-09 85.1 2.6 83 368-451 170-263 (699)
61 KOG1644 U2-associated snRNP A' 97.3 0.0004 8.6E-09 66.2 5.5 58 370-427 87-150 (233)
62 COG5238 RNA1 Ran GTPase-activa 97.2 0.00019 4.2E-09 71.1 2.0 85 271-356 25-130 (388)
63 KOG1644 U2-associated snRNP A' 96.8 0.0019 4.2E-08 61.6 5.2 63 367-429 60-125 (233)
64 KOG2739 Leucine-rich acidic nu 96.6 0.00096 2.1E-08 66.3 1.7 39 297-335 63-103 (260)
65 PF13306 LRR_5: Leucine rich r 96.2 0.013 2.7E-07 53.1 6.8 104 247-354 7-111 (129)
66 PRK06893 DNA replication initi 96.1 0.013 2.8E-07 59.2 6.9 89 4-95 94-198 (229)
67 KOG2739 Leucine-rich acidic nu 96.1 0.0038 8.1E-08 62.2 2.8 61 370-431 64-130 (260)
68 KOG4341 F-box protein containi 96.0 0.0013 2.8E-08 69.3 -1.2 224 227-450 189-438 (483)
69 PF05729 NACHT: NACHT domain 95.9 0.015 3.2E-07 55.1 5.9 68 1-68 81-162 (166)
70 PF13306 LRR_5: Leucine rich r 95.5 0.033 7.1E-07 50.3 6.5 36 272-308 8-44 (129)
71 KOG1947 Leucine rich repeat pr 95.4 0.0014 3E-08 74.0 -3.9 109 251-359 187-308 (482)
72 KOG2123 Uncharacterized conser 95.4 0.0015 3.3E-08 65.1 -3.2 98 227-328 18-122 (388)
73 KOG2123 Uncharacterized conser 95.3 0.0012 2.5E-08 65.9 -4.1 67 367-434 37-105 (388)
74 PF00560 LRR_1: Leucine Rich R 95.1 0.01 2.3E-07 35.6 1.0 21 395-415 1-21 (22)
75 KOG1947 Leucine rich repeat pr 94.9 0.0044 9.5E-08 69.9 -1.7 108 228-335 188-307 (482)
76 PRK00080 ruvB Holliday junctio 94.7 0.093 2E-06 56.2 7.9 152 29-186 151-310 (328)
77 TIGR00635 ruvB Holliday juncti 94.5 0.23 5E-06 52.4 10.3 151 29-186 130-289 (305)
78 PF00560 LRR_1: Leucine Rich R 94.4 0.014 3.1E-07 35.0 0.5 18 278-295 2-19 (22)
79 PF01637 Arch_ATPase: Archaeal 94.0 0.19 4.1E-06 50.4 8.1 97 1-99 118-233 (234)
80 PRK00411 cdc6 cell division co 93.7 0.6 1.3E-05 51.3 11.9 141 2-153 139-308 (394)
81 PF13504 LRR_7: Leucine rich r 93.2 0.061 1.3E-06 30.0 1.6 16 395-410 2-17 (17)
82 TIGR03015 pepcterm_ATPase puta 93.0 0.68 1.5E-05 47.8 10.4 103 1-104 123-242 (269)
83 COG3899 Predicted ATPase [Gene 92.1 0.82 1.8E-05 55.2 10.7 165 1-170 154-337 (849)
84 KOG4308 LRR-containing protein 92.0 0.0016 3.5E-08 72.5 -11.3 17 248-264 111-127 (478)
85 PF13504 LRR_7: Leucine rich r 90.9 0.14 2.9E-06 28.6 1.2 15 277-291 2-16 (17)
86 TIGR03420 DnaA_homol_Hda DnaA 90.9 0.78 1.7E-05 46.0 7.8 94 4-100 93-201 (226)
87 PRK05564 DNA polymerase III su 90.5 1.2 2.6E-05 47.3 9.0 93 2-100 95-190 (313)
88 TIGR02928 orc1/cdc6 family rep 90.4 5.1 0.00011 43.4 14.1 143 1-153 129-300 (365)
89 PF13173 AAA_14: AAA domain 87.9 0.57 1.2E-05 42.4 3.7 60 2-61 62-127 (128)
90 TIGR01242 26Sp45 26S proteasom 87.6 1.2 2.6E-05 48.3 6.7 88 3-94 217-328 (364)
91 smart00369 LRR_TYP Leucine-ric 87.1 0.43 9.4E-06 29.7 1.7 21 393-413 1-21 (26)
92 smart00370 LRR Leucine-rich re 87.1 0.43 9.4E-06 29.7 1.7 21 393-413 1-21 (26)
93 PRK07471 DNA polymerase III su 86.4 5.9 0.00013 42.9 11.0 94 2-101 142-239 (365)
94 PRK09087 hypothetical protein; 85.6 4.3 9.4E-05 40.8 8.9 87 4-95 90-190 (226)
95 PRK08727 hypothetical protein; 84.8 2.6 5.6E-05 42.6 7.0 68 4-71 96-177 (233)
96 KOG4308 LRR-containing protein 84.0 0.018 4E-07 64.2 -9.8 161 271-431 110-304 (478)
97 TIGR00678 holB DNA polymerase 83.7 4.5 9.8E-05 39.2 8.0 87 2-96 97-187 (188)
98 PRK13342 recombination factor 83.1 4.9 0.00011 44.5 8.9 95 1-98 92-194 (413)
99 smart00369 LRR_TYP Leucine-ric 82.2 0.92 2E-05 28.2 1.6 21 322-342 1-21 (26)
100 smart00370 LRR Leucine-rich re 82.2 0.92 2E-05 28.2 1.6 21 322-342 1-21 (26)
101 PRK05642 DNA replication initi 80.7 4.9 0.00011 40.6 7.2 88 4-94 100-202 (234)
102 KOG0473 Leucine-rich repeat pr 78.2 0.091 2E-06 51.5 -5.9 80 276-356 42-121 (326)
103 PF14516 AAA_35: AAA-like doma 78.1 26 0.00057 37.4 12.1 54 46-105 191-244 (331)
104 PRK09112 DNA polymerase III su 77.9 8.8 0.00019 41.3 8.4 95 2-100 142-240 (351)
105 KOG0473 Leucine-rich repeat pr 76.9 0.071 1.5E-06 52.2 -7.0 64 367-430 61-124 (326)
106 PRK08084 DNA replication initi 76.9 8.4 0.00018 38.9 7.5 68 4-71 100-182 (235)
107 TIGR02397 dnaX_nterm DNA polym 76.1 15 0.00032 39.6 9.7 95 3-99 119-217 (355)
108 smart00364 LRR_BAC Leucine-ric 75.7 1.6 3.5E-05 27.2 1.2 18 394-411 2-19 (26)
109 PRK06620 hypothetical protein; 75.4 9.9 0.00021 37.8 7.4 66 4-70 88-161 (214)
110 PRK06645 DNA polymerase III su 75.4 14 0.0003 41.8 9.4 92 2-95 129-224 (507)
111 KOG3864 Uncharacterized conser 73.6 0.43 9.3E-06 46.1 -2.6 36 277-312 102-138 (221)
112 PRK14961 DNA polymerase III su 72.9 20 0.00043 38.9 9.6 91 3-95 121-215 (363)
113 PRK12402 replication factor C 72.0 13 0.00028 39.7 7.9 90 4-95 128-221 (337)
114 COG1373 Predicted ATPase (AAA+ 71.8 9.6 0.00021 41.9 6.9 65 1-66 94-164 (398)
115 PRK14963 DNA polymerase III su 71.3 16 0.00035 41.4 8.7 92 2-95 117-212 (504)
116 COG2909 MalT ATP-dependent tra 69.8 32 0.00069 40.7 10.5 179 2-206 130-340 (894)
117 PLN03025 replication factor C 68.4 21 0.00045 37.9 8.4 89 3-94 101-194 (319)
118 PRK14959 DNA polymerase III su 67.6 28 0.00062 40.3 9.6 100 2-104 120-225 (624)
119 PRK05707 DNA polymerase III su 65.6 24 0.00051 37.7 8.1 92 2-100 108-203 (328)
120 PRK14087 dnaA chromosomal repl 63.5 22 0.00048 39.7 7.7 95 4-98 209-317 (450)
121 PRK08903 DnaA regulatory inact 63.5 20 0.00043 35.9 6.8 95 4-101 93-200 (227)
122 PRK07003 DNA polymerase III su 63.0 33 0.00072 40.5 9.0 95 4-100 122-221 (830)
123 PRK06090 DNA polymerase III su 61.7 64 0.0014 34.2 10.4 88 4-101 111-202 (319)
124 KOG3864 Uncharacterized conser 61.5 1.8 3.8E-05 42.0 -1.2 78 254-331 103-184 (221)
125 PF02463 SMC_N: RecF/RecN/SMC 61.3 6.4 0.00014 39.2 2.7 49 4-54 161-212 (220)
126 PRK00440 rfc replication facto 59.5 46 0.001 35.0 9.1 90 3-95 104-198 (319)
127 PF00308 Bac_DnaA: Bacterial d 58.8 28 0.0006 34.7 6.8 68 4-71 100-181 (219)
128 PRK14962 DNA polymerase III su 57.7 64 0.0014 36.3 10.0 98 2-102 118-221 (472)
129 PRK03992 proteasome-activating 57.7 38 0.00082 37.1 8.2 87 3-93 226-336 (389)
130 smart00365 LRR_SD22 Leucine-ri 57.1 8.2 0.00018 24.2 1.6 16 394-409 2-17 (26)
131 PHA02544 44 clamp loader, smal 56.5 59 0.0013 34.2 9.3 65 3-67 102-171 (316)
132 PRK07940 DNA polymerase III su 56.2 48 0.001 36.3 8.6 90 4-100 120-213 (394)
133 PRK07399 DNA polymerase III su 56.1 68 0.0015 33.9 9.5 92 3-99 126-220 (314)
134 PRK13341 recombination factor 54.2 39 0.00084 40.2 7.9 90 2-94 110-211 (725)
135 PRK04195 replication factor C 52.8 34 0.00074 38.7 7.0 90 2-95 99-197 (482)
136 TIGR02903 spore_lon_C ATP-depe 52.4 38 0.00082 39.6 7.4 85 16-103 309-398 (615)
137 PRK14957 DNA polymerase III su 51.3 63 0.0014 37.0 8.7 97 2-100 120-221 (546)
138 PRK14955 DNA polymerase III su 51.2 35 0.00076 37.5 6.6 92 2-95 128-223 (397)
139 PF13516 LRR_6: Leucine Rich r 50.8 7.5 0.00016 23.5 0.7 14 394-407 2-15 (24)
140 PRK08769 DNA polymerase III su 50.6 58 0.0013 34.5 7.9 90 4-101 116-209 (319)
141 PRK08691 DNA polymerase III su 50.6 54 0.0012 38.5 8.1 92 2-95 120-215 (709)
142 KOG3763 mRNA export factor TAP 50.5 7.3 0.00016 43.4 1.1 63 369-432 216-285 (585)
143 COG2256 MGS1 ATPase related to 50.3 38 0.00083 36.6 6.3 91 1-94 104-206 (436)
144 PRK14970 DNA polymerase III su 49.8 64 0.0014 34.9 8.4 92 2-95 109-204 (367)
145 TIGR02880 cbbX_cfxQ probable R 48.8 81 0.0017 32.8 8.6 66 4-69 124-208 (284)
146 TIGR00362 DnaA chromosomal rep 48.1 1.2E+02 0.0027 33.2 10.4 88 4-94 202-304 (405)
147 PRK12323 DNA polymerase III su 47.7 62 0.0013 37.7 7.9 93 3-97 126-222 (700)
148 PRK06964 DNA polymerase III su 47.3 79 0.0017 33.9 8.3 88 4-101 135-226 (342)
149 PRK08451 DNA polymerase III su 46.8 1.1E+02 0.0024 34.9 9.8 92 2-95 118-213 (535)
150 PRK14086 dnaA chromosomal repl 46.5 59 0.0013 37.6 7.5 68 4-71 380-461 (617)
151 KOG0989 Replication factor C, 46.3 47 0.001 34.6 6.0 96 4-101 132-232 (346)
152 PRK14960 DNA polymerase III su 46.0 92 0.002 36.4 8.9 92 2-95 119-214 (702)
153 PRK14950 DNA polymerase III su 45.7 98 0.0021 36.0 9.4 93 2-97 121-218 (585)
154 PTZ00454 26S protease regulato 45.3 66 0.0014 35.3 7.5 82 3-84 240-345 (398)
155 PRK07764 DNA polymerase III su 43.1 1.2E+02 0.0026 36.8 9.7 90 4-95 123-216 (824)
156 PRK14949 DNA polymerase III su 42.7 95 0.0021 37.6 8.6 97 2-100 120-221 (944)
157 PTZ00112 origin recognition co 42.2 42 0.00091 40.3 5.5 102 3-105 871-987 (1164)
158 PRK06305 DNA polymerase III su 41.3 1.7E+02 0.0037 32.8 10.1 97 2-100 122-223 (451)
159 PRK00149 dnaA chromosomal repl 39.8 1.2E+02 0.0025 34.0 8.6 88 4-94 214-316 (450)
160 PRK14956 DNA polymerase III su 39.6 1.1E+02 0.0023 34.4 8.0 97 2-100 122-223 (484)
161 cd00009 AAA The AAA+ (ATPases 39.5 34 0.00073 30.5 3.7 39 2-40 85-131 (151)
162 PRK14971 DNA polymerase III su 39.4 90 0.002 36.4 7.8 90 4-95 124-217 (614)
163 PRK05896 DNA polymerase III su 39.0 98 0.0021 35.8 7.8 95 4-101 122-222 (605)
164 smart00367 LRR_CC Leucine-rich 37.6 24 0.00052 21.8 1.6 15 346-360 2-16 (26)
165 smart00368 LRR_RI Leucine rich 36.7 25 0.00054 22.2 1.6 14 394-407 2-15 (28)
166 cd00561 CobA_CobO_BtuR ATP:cor 36.0 37 0.0008 31.9 3.3 50 4-55 98-154 (159)
167 PRK04132 replication factor C 35.7 1.9E+02 0.0042 35.0 9.8 91 3-95 632-726 (846)
168 PRK06871 DNA polymerase III su 35.7 1.5E+02 0.0032 31.6 8.1 87 4-97 110-200 (325)
169 PRK14964 DNA polymerase III su 35.6 1.5E+02 0.0033 33.5 8.5 91 3-95 118-212 (491)
170 PRK14951 DNA polymerase III su 35.5 2E+02 0.0043 33.6 9.6 91 3-95 126-220 (618)
171 KOG3763 mRNA export factor TAP 35.4 22 0.00048 39.8 1.9 75 392-466 216-308 (585)
172 PRK09111 DNA polymerase III su 35.0 1.4E+02 0.003 34.8 8.3 92 4-97 135-230 (598)
173 KOG0741 AAA+-type ATPase [Post 34.9 95 0.0021 34.9 6.5 83 4-90 601-704 (744)
174 PRK14969 DNA polymerase III su 33.9 1.5E+02 0.0032 33.9 8.4 92 2-95 120-215 (527)
175 PRK14954 DNA polymerase III su 33.6 1.5E+02 0.0032 34.7 8.3 89 4-95 130-223 (620)
176 PRK07994 DNA polymerase III su 32.0 1.5E+02 0.0032 34.9 7.9 97 2-100 120-221 (647)
177 PTZ00361 26 proteosome regulat 31.4 59 0.0013 36.1 4.4 44 28-71 321-369 (438)
178 COG3903 Predicted ATPase [Gene 30.6 16 0.00034 39.5 -0.2 180 1-186 88-292 (414)
179 PRK14948 DNA polymerase III su 30.3 2.9E+02 0.0062 32.4 10.0 93 3-98 123-220 (620)
180 PRK07132 DNA polymerase III su 29.5 2.2E+02 0.0048 29.8 8.1 90 4-101 93-186 (299)
181 PRK14953 DNA polymerase III su 29.4 3.6E+02 0.0078 30.5 10.3 93 2-96 120-216 (486)
182 PRK06647 DNA polymerase III su 29.2 3.5E+02 0.0075 31.3 10.3 91 3-95 121-215 (563)
183 PF13730 HTH_36: Helix-turn-he 28.7 56 0.0012 24.1 2.7 46 138-183 2-55 (55)
184 CHL00181 cbbX CbbX; Provisiona 28.6 3.4E+02 0.0073 28.3 9.3 68 4-71 125-211 (287)
185 COG0593 DnaA ATPase involved i 27.4 2.8E+02 0.0061 30.5 8.6 68 4-71 178-259 (408)
186 PRK14088 dnaA chromosomal repl 26.6 2.3E+02 0.0049 31.6 8.1 87 4-93 197-298 (440)
187 TIGR02881 spore_V_K stage V sp 25.9 1.5E+02 0.0033 30.2 6.2 65 4-70 108-192 (261)
188 PRK07133 DNA polymerase III su 25.5 3.1E+02 0.0066 32.7 9.0 97 3-101 120-221 (725)
189 PRK12422 chromosomal replicati 25.5 1.3E+02 0.0028 33.6 5.9 67 4-70 205-285 (445)
190 PRK07993 DNA polymerase III su 24.8 2.4E+02 0.0051 30.2 7.5 90 4-100 111-204 (334)
191 KOG2227 Pre-initiation complex 23.9 2.7E+02 0.0058 31.0 7.5 223 2-229 257-515 (529)
192 PRK14952 DNA polymerase III su 22.3 4.2E+02 0.009 30.8 9.2 98 3-102 120-222 (584)
193 PF02562 PhoH: PhoH-like prote 21.4 1E+02 0.0022 30.4 3.6 36 3-41 121-158 (205)
194 PRK14958 DNA polymerase III su 21.3 3.5E+02 0.0076 30.8 8.4 90 4-95 122-215 (509)
195 PRK05563 DNA polymerase III su 20.2 5.7E+02 0.012 29.5 9.9 92 2-95 120-215 (559)
196 PRK08116 hypothetical protein; 20.1 58 0.0013 33.6 1.6 36 4-39 181-221 (268)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-80 Score=757.75 Aligned_cols=661 Identities=30% Similarity=0.454 Sum_probs=451.6
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhhcCCCceEECCCCCHHHHHHHHHHhhcCCCCCchhHH
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLENFGVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDFK 80 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~~ 80 (734)
||+||||||||+.+||+.+++...|+++|||||||||+++++..++++++|+|+.|+++|||+||+++||++..++++++
T Consensus 296 krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~ 375 (1153)
T PLN03210 296 RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFM 375 (1153)
T ss_pred CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHhCCCchHHHHHHhhcC--CcccHHHHHHHhhhhcCCCchhHHHHHHhhcccCCh-hhhhhhhhhcccccCC
Q 004707 81 RDSRRVVKYADGNPLVLKVLGSSLK--RKSHWGNVLDDLNRICESDIHDIHDILKISFNELMP-KMKSIFLDIACFFEGE 157 (734)
Q Consensus 81 ~l~~~i~~~c~GlPLal~vlgs~L~--~~~~W~~~l~~l~~~~~~~i~~i~~~L~~Syd~L~~-~~k~~fl~ia~f~~~~ 157 (734)
+++++|+++|+|+||||+++|+.|+ ++.+|+++++++++.++.+| +++|++|||+|++ .+|.||+||||||+++
T Consensus 376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I---~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~ 452 (1153)
T PLN03210 376 ELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKI---EKTLRVSYDGLNNKKDKAIFRHIACLFNGE 452 (1153)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHH---HHHHHHhhhccCccchhhhhheehhhcCCC
Confidence 9999999999999999999999999 77899999999998887766 9999999999986 5999999999999999
Q ss_pred ChhHHHHHHHhhc---cchhHHHhhcCCceeeCCeEEecHHHHHHHHHHHhccccCCCCcceeccCchhHHHHhhcCe--
Q 004707 158 DKDFVTRILDDYG---SYGLEVLIDKSLITVSHNCLRMHDLLQEMGREIVRQESEKEPGKRSRLWDPKEIRRVLKHNK-- 232 (734)
Q Consensus 158 ~~~~~~~~l~~~~---~~~i~~L~~ksli~~~~~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~~i~~l~~l~~-- 232 (734)
+++++..++++++ ..+++.|++||||++..++++|||++|+||++|+++++ .+|++|+++|+++++.++...++
T Consensus 453 ~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~ 531 (1153)
T PLN03210 453 KVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGT 531 (1153)
T ss_pred CHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCccc
Confidence 9999999998877 67899999999999999999999999999999999998 78999999999999988765432
Q ss_pred -------eecCCccccccccccccCCCCCcEEEecCCc------------------------------CCCcCchhhhCC
Q 004707 233 -------LDLRDCRRLKRISTRFCKLKSLVDLFLHGCL------------------------------NLERFPEILEKM 275 (734)
Q Consensus 233 -------L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~------------------------------~~~~~p~~~~~l 275 (734)
++++.......-+..|.+|++|+.|.+..+. ....+|..+ ..
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 3333222222222334444444444443221 122333333 24
Q ss_pred CcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCc-ccccCCccccCCCCCcEEEcC
Q 004707 276 EHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGS-AISQLPSSVADSNVLRYLWFP 354 (734)
Q Consensus 276 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n-~l~~lp~~i~~l~~L~~L~l~ 354 (734)
.+|++|+|.++.+..+|..+..+++|+.|+|++|..++.+|. ++.+++|+.|++++| .+..+|.+++.+++|+.|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 566666666666666666666677777777776666666664 666677777777664 344667667777777777777
Q ss_pred CCCCCCccCcccCCCCCCccEEEeec---------------------CCCCCCCccCC----------------------
Q 004707 355 RCRNLVSLPPLLLSGLSSLECLHLRD---------------------CAVTDIPQEIG---------------------- 391 (734)
Q Consensus 355 ~~~~l~~l~~~~l~~l~~L~~L~Ls~---------------------n~l~~lp~~l~---------------------- 391 (734)
+|+.+..+|... ++++|+.|++++ |.+..+|..+.
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 766666666531 344444444444 44333443210
Q ss_pred --------CCCCCcEEeeccCC-CCcccccccCCCCCcEEeeecCCCCCCCCCC--CCCCceEEecCCCCCCCCCCCCc-
Q 004707 392 --------CLSSLEELDLSGNS-FESLPVSIKQLSQLSSLDLSDCNMLRSLPEL--PSCLGFLNLSGCNMLQSLPELPL- 459 (734)
Q Consensus 392 --------~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~--~~~L~~L~Ls~n~~l~~lp~l~~- 459 (734)
.+++|+.|+|++|. +..+|.+++++++|+.|+|++|..++.+|.. +++|+.|++++|..+..+|..+.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccc
Confidence 12356666666663 4467777777888888888887777777653 46677777777766665555443
Q ss_pred ----------------------CCceEeccCCcCCCCCcccccccccc---CCCCCccccc------------CCCCCCc
Q 004707 460 ----------------------RLRRLRAGNCKLLQSLPEIRSSVEEL---DASVPENLSK------------YSNNPRV 502 (734)
Q Consensus 460 ----------------------~L~~L~l~~c~~L~~l~~l~~s~n~L---~~~~p~~l~~------------l~~~~~~ 502 (734)
+|+.|++++|+.++.+|....++..| +..-+.+|.. ...+...
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~ 927 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHS 927 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccc
Confidence 45555566666666555432222222 1111111110 0111112
Q ss_pred ccCcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCceeeecCCCCCCCCcccCCCCceE
Q 004707 503 VYPTEISHQFTNCLKLNEKANNRILADLRLRIQHMTIALLRRLDERVKNKKRIAPKACTIALPGSEIPDWFRNQSSGHLM 582 (734)
Q Consensus 503 ~~~~~~~~~~~nc~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Pg~~iP~wf~~q~~g~si 582 (734)
.+|......|.||++|++.+.. + ++ .....+++||.++|+||+||+.|+++
T Consensus 928 ~~p~~~~l~f~nC~~L~~~a~l----------~---------------~~----~~~~~~~l~g~evp~~f~hr~~g~sl 978 (1153)
T PLN03210 928 KLPSTVCINFINCFNLDQEALL----------Q---------------QQ----SIFKQLILSGEEVPSYFTHRTTGASL 978 (1153)
T ss_pred cCCchhccccccccCCCchhhh----------c---------------cc----ccceEEECCCccCchhccCCccccee
Confidence 3444445567788777653310 0 00 12235789999999999999999999
Q ss_pred E-EEeeCCCcc-ccccceeEEEEEeecCCCCccCCCCCceeEeeecCCccceeeeeecccccccccccceeecccccCCC
Q 004707 583 S-IQLLSHSFC-RNLIGFAFCAVLGFKQDLDFLDTIGDGRQFSSLRDPFVSVRYRFRLETKTVSEAKHVNRYNHFEDLQR 660 (734)
Q Consensus 583 ~-i~l~~~~~~-~~~~gf~~c~v~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (734)
+ |++ |+.|+ ..|.||++|+|+++........ ....+|.|++.+.+.+.. . .....+.+. .
T Consensus 979 ~~i~l-~~~~~~~~~~~f~~c~v~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~---~-------~~~~~~~~~------~ 1040 (1153)
T PLN03210 979 TNIPL-LHISPCQPFFRFRACAVVDSESFFIISV-SFDIQVCCRFIDRLGNHF---D-------SPYQPHVFS------V 1040 (1153)
T ss_pred eeecc-CCcccCCCccceEEEEEEecCccccCCC-ceeEEEEEEEECCCCCcc---c-------cCCCceeEe------e
Confidence 8 999 88888 6799999999998865432110 012366777664221110 0 000000000 1
Q ss_pred CCCCCeEEEEeecccccCCC----CCCCeeeEEEEEeeccccccCCcceEeeeeceEeecCCCC
Q 004707 661 PIDSDHVILGFCLCMNVGFP----DGNNHTTVSFEFFPAVGNALYGGYGVKRCGLCPVYANPNE 720 (734)
Q Consensus 661 ~~~sdH~~l~~~~~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~vk~cGv~~vy~~~~~ 720 (734)
....+|++++... ...... .+.++.+++++|..... ...++||+||||++|+.+..
T Consensus 1041 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1041 TKKGSHLVIFDCC-FPLNEDNAPLAELNYDHVDIQFRLTNK---NSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred eccccceEEeccc-ccccccccchhccCCceeeEEEEEecC---CCCeEEEeeeEEEeccCCCc
Confidence 1234455544221 100011 12245555555554322 22479999999999976554
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-50 Score=467.30 Aligned_cols=453 Identities=27% Similarity=0.352 Sum_probs=291.8
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhh-cCCCceEECCCCCHHHHHHHHHHhhcCCC-CCchh
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLEN-FGVEKIYRVNGLEFYEAFELFYYFAFKEN-HCPED 78 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~-~~~~~~y~v~~L~~~~s~~Lf~~~af~~~-~~~~~ 78 (734)
|||+|||||||+..+|+.+..++|....||+|++|||++.|+.. |+++..++|++|..+|||.||+++||... ...++
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 79999999999999999999999999899999999999999999 99999999999999999999999999763 33345
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHhhcC---CcccHHHHHHHhhhhcCCC----chhHHHHHHhhcccCChhhhhhhhhhc
Q 004707 79 FKRDSRRVVKYADGNPLVLKVLGSSLK---RKSHWGNVLDDLNRICESD----IHDIHDILKISFNELMPKMKSIFLDIA 151 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPLal~vlgs~L~---~~~~W~~~l~~l~~~~~~~----i~~i~~~L~~Syd~L~~~~k~~fl~ia 151 (734)
+.++|++|+++|+|+|||++|+|..|+ +.++|+.+.+.+.+....+ .+.+..+|+.|||.||.+.|.||||||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLyca 420 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCA 420 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhc
Confidence 999999999999999999999999999 6679999999887763322 345799999999999988999999999
Q ss_pred ccccCCCh--hHHHHHHHh---------------hccchhHHHhhcCCceeeC-----CeEEecHHHHHHHHHHHhcccc
Q 004707 152 CFFEGEDK--DFVTRILDD---------------YGSYGLEVLIDKSLITVSH-----NCLRMHDLLQEMGREIVRQESE 209 (734)
Q Consensus 152 ~f~~~~~~--~~~~~~l~~---------------~~~~~i~~L~~ksli~~~~-----~~~~mHdll~~~~~~i~~~e~~ 209 (734)
.||+++.+ +.+...|.+ .|..++.+|+.++|+...+ .+++|||+++|||.+++.+...
T Consensus 421 lFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~ 500 (889)
T KOG4658|consen 421 LFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGK 500 (889)
T ss_pred cCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccc
Confidence 99999865 455555533 3478899999999999875 6899999999999999983332
Q ss_pred CCCCcc----eeccCchhHHHHh----------------------hcCeeecCCccc-ccccc-ccccCCCCCcEEEecC
Q 004707 210 KEPGKR----SRLWDPKEIRRVL----------------------KHNKLDLRDCRR-LKRIS-TRFCKLKSLVDLFLHG 261 (734)
Q Consensus 210 ~~~~~~----~~l~~~~~i~~l~----------------------~l~~L~L~~~~~-~~~~p-~~~~~l~~L~~L~L~~ 261 (734)
...... ..+.+...+.... ++++|-+..+.. +..++ ..|..++.|++|||++
T Consensus 501 ~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~ 580 (889)
T KOG4658|consen 501 QEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG 580 (889)
T ss_pred cccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC
Confidence 111100 0011111111111 233333333331 22222 2244556666666665
Q ss_pred CcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCcc
Q 004707 262 CLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS 341 (734)
Q Consensus 262 ~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~ 341 (734)
|...+.+|+.++++-+|++|+++++.++.+|.++++|..|.+|++..+..+..+|.....|++|++|.+.......-...
T Consensus 581 ~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~ 660 (889)
T KOG4658|consen 581 NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLL 660 (889)
T ss_pred CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhh
Confidence 55555566666666666666666666666666666666666666655555555555444455555555543321100000
Q ss_pred ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCc----EEeeccCCCCcccccccCCC
Q 004707 342 VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLE----ELDLSGNSFESLPVSIKQLS 417 (734)
Q Consensus 342 i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~----~L~Ls~n~l~~lp~~l~~l~ 417 (734)
+.. +.++.+|+.+....... .+-..+..++.|. .+.+.++.....+.++..+.
T Consensus 661 l~e----------------------l~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~ 717 (889)
T KOG4658|consen 661 LKE----------------------LENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG 717 (889)
T ss_pred HHh----------------------hhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence 011 12233333333322222 1111111122221 22222334445555666666
Q ss_pred CCcEEeeecCCCCCCCCCC---------CCCCceEEecCCCCCCCCC--CCCcCCceEeccCCcCCCCCc
Q 004707 418 QLSSLDLSDCNMLRSLPEL---------PSCLGFLNLSGCNMLQSLP--ELPLRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 418 ~L~~L~L~~n~~l~~lp~~---------~~~L~~L~Ls~n~~l~~lp--~l~~~L~~L~l~~c~~L~~l~ 476 (734)
+|+.|.+.+|......... ++++..+.+.+|.....+. ..+++|+.|.+..|+.++.+.
T Consensus 718 ~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 718 NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 6777777666654322221 2234444444554443333 246678888888877776654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=4.9e-25 Score=270.01 Aligned_cols=271 Identities=22% Similarity=0.296 Sum_probs=120.0
Q ss_pred HHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCc-ccCccccCCCCCcE
Q 004707 225 RRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAIT-ELPSSFENLLGLES 303 (734)
Q Consensus 225 ~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~ 303 (734)
..+.+++.|++++|...+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 33333334444433333333333334444444444443333333333344444444444433333 23333333344444
Q ss_pred eeecCCCCCCCCCcccCCCCccceeeccCcccc-cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEe----
Q 004707 304 LSVRGCSKLDKLPDNIGNLESLAYILADGSAIS-QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHL---- 378 (734)
Q Consensus 304 L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~L---- 378 (734)
|++++|.+.+.+|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|.. ++.+++|+.|++
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNN 367 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCe
Confidence 444443333333333333444444444433333 23333333444444444333332223322 333333333333
Q ss_pred --------------------ecCCCCC-CCccCCCCCCCcEEeeccCCCC-cccccccCCCCCcEEeeecCCCCCCCCC-
Q 004707 379 --------------------RDCAVTD-IPQEIGCLSSLEELDLSGNSFE-SLPVSIKQLSQLSSLDLSDCNMLRSLPE- 435 (734)
Q Consensus 379 --------------------s~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~- 435 (734)
++|++.+ +|..++.+++|+.|++++|+++ .+|..+..+++|+.|++++|.+.+.+|.
T Consensus 368 l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred eEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence 3333332 3444444445555555555444 3444455555555555555555554443
Q ss_pred --CCCCCceEEecCCCCCCCCCCC--CcCCceEeccCCcCCCCCc----------cccccccccCCCCCcccccC
Q 004707 436 --LPSCLGFLNLSGCNMLQSLPEL--PLRLRRLRAGNCKLLQSLP----------EIRSSVEELDASVPENLSKY 496 (734)
Q Consensus 436 --~~~~L~~L~Ls~n~~l~~lp~l--~~~L~~L~l~~c~~L~~l~----------~l~~s~n~L~~~~p~~l~~l 496 (734)
.+++|+.|++++|.+.+.+|.. ..+|+.|++++|...+.+| .++++.|.+.+.+|..+..+
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 2345666666666666555543 2356666666665433332 34566666666666655444
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=1.3e-25 Score=236.14 Aligned_cols=170 Identities=31% Similarity=0.506 Sum_probs=136.4
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhhcCC-CceEECCCCCHHHHHHHHHHhhcCCC-CCchh
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLENFGV-EKIYRVNGLEFYEAFELFYYFAFKEN-HCPED 78 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~~-~~~y~v~~L~~~~s~~Lf~~~af~~~-~~~~~ 78 (734)
||+||||||||+..+|+.+...++.++.|++||||||+++|+..++. ...|+|++|+.+||++||++.|+... ..++.
T Consensus 101 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 180 (287)
T PF00931_consen 101 KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPED 180 (287)
T ss_dssp TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TT
T ss_pred ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57999999999999999999888888889999999999999988765 67999999999999999999998765 44566
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHhhcC---CcccHHHHHHHhhhhcCC---CchhHHHHHHhhcccCChhhhhhhhhhcc
Q 004707 79 FKRDSRRVVKYADGNPLVLKVLGSSLK---RKSHWGNVLDDLNRICES---DIHDIHDILKISFNELMPKMKSIFLDIAC 152 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPLal~vlgs~L~---~~~~W~~~l~~l~~~~~~---~i~~i~~~L~~Syd~L~~~~k~~fl~ia~ 152 (734)
..+++++|+++|+|+||||+++|+.|+ +..+|+.+++++.+.... ....+..++.+||+.|+++.|+||+|+|+
T Consensus 181 ~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~ 260 (287)
T PF00931_consen 181 LEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSI 260 (287)
T ss_dssp SCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcC
Confidence 788999999999999999999999996 778999999988776532 24567999999999999999999999999
Q ss_pred cccCCC--hhHHHHHHHhhc
Q 004707 153 FFEGED--KDFVTRILDDYG 170 (734)
Q Consensus 153 f~~~~~--~~~~~~~l~~~~ 170 (734)
||.++. .+.+.++|...|
T Consensus 261 f~~~~~i~~~~li~lW~~e~ 280 (287)
T PF00931_consen 261 FPEGVPIPRERLIRLWVAEG 280 (287)
T ss_dssp SGTTS-EEHHHHHHHHTT-H
T ss_pred CCCCceECHHHHHHHHHHCC
Confidence 999976 678888887655
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=4.3e-25 Score=270.47 Aligned_cols=275 Identities=21% Similarity=0.294 Sum_probs=193.3
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCc-ccCccccCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAIT-ELPSSFENLL 299 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~i~~l~ 299 (734)
|..+..+.++++|++++|...+.+|..+.++++|+.|++++|.+.+.+|..+.++++|++|++++|.++ .+|..+..++
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 332 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence 344445555555555555555555555555555555555555555555555555555555555555554 3444555556
Q ss_pred CCcEeeecCCCCCCCCCcccCCCCccceeeccCcccc-cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEe
Q 004707 300 GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAIS-QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHL 378 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~L 378 (734)
+|+.|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|+..+.+|.. +..+++|+.|++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L 411 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRL 411 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEEC
Confidence 6666666665555555655666666666666666555 45555666666666666665555555554 778999999999
Q ss_pred ecCCCCC-CCccCCCCCCCcEEeeccCCCC-cccccccCCCCCcEEeeecCCCCCCCCCCC--CCCceEEecCCCCCCCC
Q 004707 379 RDCAVTD-IPQEIGCLSSLEELDLSGNSFE-SLPVSIKQLSQLSSLDLSDCNMLRSLPELP--SCLGFLNLSGCNMLQSL 454 (734)
Q Consensus 379 s~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~--~~L~~L~Ls~n~~l~~l 454 (734)
++|++++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+.+|... ++|+.|++++|++.+.+
T Consensus 412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc
Confidence 9999986 8888999999999999999998 567778899999999999999999888754 68999999999999988
Q ss_pred CCC---CcCCceEeccCCcCCCCCc----------cccccccccCCCCCcccccC
Q 004707 455 PEL---PLRLRRLRAGNCKLLQSLP----------EIRSSVEELDASVPENLSKY 496 (734)
Q Consensus 455 p~l---~~~L~~L~l~~c~~L~~l~----------~l~~s~n~L~~~~p~~l~~l 496 (734)
|.. ..+|+.|++++|.....+| .++++.|.+++.+|..+..+
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 864 4578999999986654444 46788899998888766544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.6e-23 Score=221.96 Aligned_cols=264 Identities=23% Similarity=0.272 Sum_probs=179.0
Q ss_pred HHHhccccCCCCcceeccCchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEE
Q 004707 202 EIVRQESEKEPGKRSRLWDPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHI 281 (734)
Q Consensus 202 ~i~~~e~~~~~~~~~~l~~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 281 (734)
-++|..+.+..| .|.+|.++..+..|||++| .++..|..+..-+++-+|+|++|++-......+-+++.|-+|
T Consensus 83 v~~R~N~LKnsG------iP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 83 VIVRDNNLKNSG------IPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred HhhhccccccCC------CCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 355666555544 3789999999999999997 567889989999999999999987544434566789999999
Q ss_pred EeecCCCcccCccccCCCCCcEeeecCCCCCC-------------------------CCCcccCCCCccceeeccCcccc
Q 004707 282 YLQRTAITELPSSFENLLGLESLSVRGCSKLD-------------------------KLPDNIGNLESLAYILADGSAIS 336 (734)
Q Consensus 282 ~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~-------------------------~lp~~l~~l~~L~~L~l~~n~l~ 336 (734)
+|++|++..+|+.+..|.+|++|.|++|.+.- .+|.++..+.+|..++++.|.+.
T Consensus 156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 99999999999999999999999999986531 23444555555555566666666
Q ss_pred cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCC--ccccccc
Q 004707 337 QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFE--SLPVSIK 414 (734)
Q Consensus 337 ~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~ 414 (734)
.+|..+.++++|+.|+|++| .++.+... .+.+.+|++|+||.|+++.+|+.+..++.|+.|.+.+|+++ .+|+.|+
T Consensus 236 ~vPecly~l~~LrrLNLS~N-~iteL~~~-~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGN-KITELNMT-EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred cchHHHhhhhhhheeccCcC-ceeeeecc-HHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 66666666666666666653 23333322 33445555555555555555555555555555555555443 5555565
Q ss_pred CCCCCcEEeeecCCCCCCCCCCC---CCCceEEecCCCCCCCCCC---CCcCCceEeccCCcCCCCCc
Q 004707 415 QLSQLSSLDLSDCNMLRSLPELP---SCLGFLNLSGCNMLQSLPE---LPLRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 415 ~l~~L~~L~L~~n~~l~~lp~~~---~~L~~L~Ls~n~~l~~lp~---l~~~L~~L~l~~c~~L~~l~ 476 (734)
.+.+|+.+..++|. +...|+.. ..|+.|.|+.|.+. .+|+ +.+.|+.|++.+++.|---|
T Consensus 314 KL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 55555555555443 44455433 45788888888776 5665 45678888888888876444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=6.5e-21 Score=201.48 Aligned_cols=237 Identities=22% Similarity=0.238 Sum_probs=166.9
Q ss_pred CcceeccCchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC
Q 004707 213 GKRSRLWDPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP 292 (734)
Q Consensus 213 ~~~~~l~~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp 292 (734)
..+-+-|++..++++++|+.+++..| .++.+|.......+|+.|+|.+|.+...-.+.+..++.|+.|||+.|.|+++|
T Consensus 87 nNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~ 165 (873)
T KOG4194|consen 87 NNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP 165 (873)
T ss_pred ccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc
Confidence 34456688999999999999999887 56788986666677999999999877777778888999999999999999887
Q ss_pred cc-ccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccC-CCCCcEEEcCCCCCCCccCcccCCCC
Q 004707 293 SS-FENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVAD-SNVLRYLWFPRCRNLVSLPPLLLSGL 370 (734)
Q Consensus 293 ~~-i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~-l~~L~~L~l~~~~~l~~l~~~~l~~l 370 (734)
.. |..-.++++|+|++|.+...-...|.++.+|..|.|++|.++.+|....+ +++|+.|+|..|. +..+.-..|.++
T Consensus 166 ~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL 244 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCc
Confidence 54 66667899999999887776667788889999999999999999876554 9999999887753 333322235566
Q ss_pred CCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCCCCCC---CCCCCceEEe
Q 004707 371 SSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLRSLPE---LPSCLGFLNL 445 (734)
Q Consensus 371 ~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~---~~~~L~~L~L 445 (734)
++|+.|.|..|++..+.+. |-.+.++++|+|..|+++++-. |+-++++|+.|+|++|.+...-++ ...+|+.|+|
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 6666666666665554332 4445555566666555554433 445555555555555554433222 1244555555
Q ss_pred cCCCCC
Q 004707 446 SGCNML 451 (734)
Q Consensus 446 s~n~~l 451 (734)
++|++.
T Consensus 325 s~N~i~ 330 (873)
T KOG4194|consen 325 SSNRIT 330 (873)
T ss_pred cccccc
Confidence 555444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=6.6e-22 Score=209.76 Aligned_cols=229 Identities=22% Similarity=0.335 Sum_probs=166.7
Q ss_pred CchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCC-cCchhhhCCCcCcEEEeecCCCcccCccccCC
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLE-RFPEILEKMEHLKHIYLQRTAITELPSSFENL 298 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l 298 (734)
-|+++.++.++..|.+++|+..+ +...++.++.||.+++..|+... .+|..+..+..|..|+|++|++++.|..+.+-
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~A 125 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYA 125 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhh
Confidence 47888888889999998886544 44447888889999988876543 47777888899999999999999999888888
Q ss_pred CCCcEeeecCCCCCCCCCcc-cCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCC----CCccCcccCCCCCCc
Q 004707 299 LGLESLSVRGCSKLDKLPDN-IGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRN----LVSLPPLLLSGLSSL 373 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~-l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~----l~~l~~~~l~~l~~L 373 (734)
.++-+|+||+|+ +..+|.. +.+++.|-.|+|++|.+..+|+.+..+..|+.|.|++|.. +..+ ..+++|
T Consensus 126 Kn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL 199 (1255)
T KOG0444|consen 126 KNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSL 199 (1255)
T ss_pred cCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-----ccchhh
Confidence 899999999865 4566654 5688888889999999999999998899999998888652 2222 235666
Q ss_pred cEEEeecCCCC--CCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCC--CCCCCCceEEecCCC
Q 004707 374 ECLHLRDCAVT--DIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLP--ELPSCLGFLNLSGCN 449 (734)
Q Consensus 374 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp--~~~~~L~~L~Ls~n~ 449 (734)
++|.+++.+-+ .+|.++..+.+|..+++|.|++..+|..+-++++|+.|+|++|++...-- ....+|++|++|.|+
T Consensus 200 ~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 200 SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence 67777766544 36777777777777777777777777777777777777777776543111 122456666666665
Q ss_pred CCCCCCC
Q 004707 450 MLQSLPE 456 (734)
Q Consensus 450 ~l~~lp~ 456 (734)
++ .+|.
T Consensus 280 Lt-~LP~ 285 (1255)
T KOG0444|consen 280 LT-VLPD 285 (1255)
T ss_pred hc-cchH
Confidence 54 4443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=2e-20 Score=197.83 Aligned_cols=250 Identities=25% Similarity=0.202 Sum_probs=192.3
Q ss_pred CchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCC
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENL 298 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l 298 (734)
..+++..++.+++|||+.|.....--.+|..-.+++.|+|++|.+...-...|.++.+|..|.|++|+++.+|.. |.+|
T Consensus 141 ~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 141 TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhc
Confidence 345677788899999999866554445677778899999999988776667788888999999999999999865 6779
Q ss_pred CCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEE
Q 004707 299 LGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLH 377 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~ 377 (734)
++|+.|+|..|.+-..-...|..|++|+.|.|..|.+..+.++ +..+.++++|+|+.| .+..+....+.++++|+.|+
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhc
Confidence 9999999998765433345688899999999999999888664 567889999999884 46666666678889999999
Q ss_pred eecCCCCCC-CccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCCCCC---CCCCCCceEEecCCCCCC
Q 004707 378 LRDCAVTDI-PQEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLRSLP---ELPSCLGFLNLSGCNMLQ 452 (734)
Q Consensus 378 Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~~lp---~~~~~L~~L~Ls~n~~l~ 452 (734)
||+|.|..+ ++.+...++|+.|+|+.|+++++++ ++..+..|+.|+|++|++...-. ..+++|+.|||++|.+..
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 999988874 5667778899999999999988876 56778888888888887542111 234778888888887664
Q ss_pred CCCC------CCcCCceEeccCCc
Q 004707 453 SLPE------LPLRLRRLRAGNCK 470 (734)
Q Consensus 453 ~lp~------l~~~L~~L~l~~c~ 470 (734)
.|-. ..++|+.|++.+++
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred EEecchhhhccchhhhheeecCce
Confidence 4432 23567777776663
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=2.4e-18 Score=211.95 Aligned_cols=243 Identities=30% Similarity=0.507 Sum_probs=187.9
Q ss_pred hHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecC-CCcccCccccCCCCC
Q 004707 223 EIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRT-AITELPSSFENLLGL 301 (734)
Q Consensus 223 ~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n-~l~~lp~~i~~l~~L 301 (734)
.+..+.+++.|+|++|..++.+|. ++.+++|+.|+|++|..+..+|..++++++|+.|++++| .++.+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 355677888899988888888886 778899999999998888888988999999999999885 677888766 78899
Q ss_pred cEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCcccc------------------------------CCCCCcEE
Q 004707 302 ESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVA------------------------------DSNVLRYL 351 (734)
Q Consensus 302 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~------------------------------~l~~L~~L 351 (734)
++|++++|..++.+|.. .++|++|++++|.+..+|..+. ..++|+.|
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence 99999998888777753 3567788888888777775421 12467778
Q ss_pred EcCCCCCCCccCcccCCCCCCccEEEeecCC-CCCCCccCCCCCCCcEEeeccC-CCCcccccccCCCCCcEEeeecCCC
Q 004707 352 WFPRCRNLVSLPPLLLSGLSSLECLHLRDCA-VTDIPQEIGCLSSLEELDLSGN-SFESLPVSIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 352 ~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~ 429 (734)
++++|..+..+|.. ++++++|+.|+|++|. +..+|..+ .+++|+.|++++| .+..+|.. .++|+.|+|++|.+
T Consensus 784 ~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 784 FLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI 858 (1153)
T ss_pred eCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCC
Confidence 88888778888876 7888999999998875 55677766 6888999999887 45566643 35788888888765
Q ss_pred CCCCCC---CCCCCceEEecCCCCCCCCCCCC---cCCceEeccCCcCCCCCc
Q 004707 430 LRSLPE---LPSCLGFLNLSGCNMLQSLPELP---LRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 430 l~~lp~---~~~~L~~L~Ls~n~~l~~lp~l~---~~L~~L~l~~c~~L~~l~ 476 (734)
. .+|. .+++|+.|++++|+.+..+|..+ .+|+.|++++|++|+.++
T Consensus 859 ~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 859 E-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred c-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 4 4563 34678888998888888777643 456777888898887654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=2.1e-21 Score=197.11 Aligned_cols=204 Identities=30% Similarity=0.433 Sum_probs=181.8
Q ss_pred CchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCC
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLL 299 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~ 299 (734)
-|+.++.+..+..++.+.|.. ..+|+.++.+..|+.|+..+|+ ...+|+.+.++.+|..|++.+|+++.+|+..-+++
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~ 183 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMK 183 (565)
T ss_pred ccHHHhhhhhhhhhhccccce-eecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHH
Confidence 478888888899999998755 4566778899999999988765 55678888899999999999999999988866799
Q ss_pred CCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEee
Q 004707 300 GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLR 379 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls 379 (734)
.|++||... +.++.+|+.++.+.+|+.|++..|.+..+| .|..+..|++|+++. +.+..+|......+++|..|||.
T Consensus 184 ~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 184 RLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeecc
Confidence 999999988 578899999999999999999999999999 789999999999976 67888888877799999999999
Q ss_pred cCCCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCC
Q 004707 380 DCAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 380 ~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~ 429 (734)
+|+++++|+.+..+.+|++||+|+|.++.+|.+++++ .|+.|-+.||++
T Consensus 261 dNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 261 DNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 9999999999999999999999999999999999999 999999999965
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=1.1e-17 Score=192.15 Aligned_cols=265 Identities=26% Similarity=0.320 Sum_probs=194.6
Q ss_pred cCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCC
Q 004707 230 HNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGC 309 (734)
Q Consensus 230 l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~ 309 (734)
...|+++++. ++.+|..+. ++|+.|++.+|.+ ..+|.. +++|++|+|++|+|+.+|.. .++|++|++++|
T Consensus 203 ~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N~L-t~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNL-TSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCC-CCcCCcchh--cCCCEEEccCCcC-CCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 4569999984 457888775 4899999999864 456753 57899999999999999863 468999999998
Q ss_pred CCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc
Q 004707 310 SKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE 389 (734)
Q Consensus 310 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~ 389 (734)
.+ ..+|.. .++|+.|++++|.++.+|.. +++|+.|++++| .+..+|.. ..+|+.|++++|+++.+|..
T Consensus 273 ~L-~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 273 PL-THLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred ch-hhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccccccc
Confidence 64 456653 35788999999999999863 478999999986 56666652 34688899999999988853
Q ss_pred CCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCCCcCCceEeccCC
Q 004707 390 IGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPELPLRLRRLRAGNC 469 (734)
Q Consensus 390 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~~c 469 (734)
..+|+.|+|++|+|+.+|.. .++|+.|++++|.+. .+|..+.+|+.|++++|.+. .+|..+.+|+.|++++|
T Consensus 341 ---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N 412 (788)
T PRK15387 341 ---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGN 412 (788)
T ss_pred ---ccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCcccccccceEEecCCccc-CCCCcccCCCEEEccCC
Confidence 36899999999999999863 357888999998765 58888889999999999877 58888889999999998
Q ss_pred cCCCCCccccccccccCCCCCcccccCCCCCCcccCcccccccccccccchhhhhhhHHHHHHHHHH
Q 004707 470 KLLQSLPEIRSSVEELDASVPENLSKYSNNPRVVYPTEISHQFTNCLKLNEKANNRILADLRLRIQH 536 (734)
Q Consensus 470 ~~L~~l~~l~~s~n~L~~~~p~~l~~l~~~~~~~~~~~~~~~~~nc~~L~~~~~~~~~~~~~~~~~~ 536 (734)
. +..+|.+..++..|+ +.+|....+|..+. .+.++..|+.. +|.+.+..+..++.
T Consensus 413 ~-LssIP~l~~~L~~L~---------Ls~NqLt~LP~sl~-~L~~L~~LdLs-~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 413 R-LTSLPMLPSGLLSLS---------VYRNQLTRLPESLI-HLSSETTVNLE-GNPLSERTLQALRE 467 (788)
T ss_pred c-CCCCCcchhhhhhhh---------hccCcccccChHHh-hccCCCeEECC-CCCCCchHHHHHHH
Confidence 6 666775432222211 23333334554432 34455555554 44455555544433
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=5.6e-17 Score=186.36 Aligned_cols=236 Identities=28% Similarity=0.315 Sum_probs=185.2
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecC
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRG 308 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~ 308 (734)
.++.|++.+|. ++.+|. .+++|++|+|++|.+. .+|.. .++|+.|++++|.++.+|.. +.+|+.|++++
T Consensus 223 ~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFG 291 (788)
T ss_pred CCCEEEccCCc-CCCCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcC
Confidence 68899999875 556776 3689999999998654 56653 46899999999999988864 36788999999
Q ss_pred CCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc
Q 004707 309 CSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ 388 (734)
Q Consensus 309 ~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~ 388 (734)
|.+ ..+|.. +++|+.|++++|.+..+|... .+|+.|++++| .+..+|.. ..+|+.|+|++|+++.+|.
T Consensus 292 N~L-t~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 292 NQL-TSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN-QLTSLPTL----PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred Ccc-cccccc---ccccceeECCCCccccCCCCc---ccccccccccC-cccccccc----ccccceEecCCCccCCCCC
Confidence 764 466753 478999999999999988633 46778888875 45667642 2579999999999999886
Q ss_pred cCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCCCcCCceEeccC
Q 004707 389 EIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPELPLRLRRLRAGN 468 (734)
Q Consensus 389 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~~ 468 (734)
. .++|+.|++++|.++.+|.. .++|+.|+|++|++. .+|..+++|+.|++++|.+. .+|..+.+|+.|++++
T Consensus 360 l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~Ls-sIP~l~~~L~~L~Ls~ 431 (788)
T PRK15387 360 L---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYR 431 (788)
T ss_pred C---CcccceehhhccccccCccc---ccccceEEecCCccc-CCCCcccCCCEEEccCCcCC-CCCcchhhhhhhhhcc
Confidence 4 46788999999999998864 357999999999865 58888889999999999876 5888888899999887
Q ss_pred CcCCCCCcc----------ccccccccCCCCCcccccC
Q 004707 469 CKLLQSLPE----------IRSSVEELDASVPENLSKY 496 (734)
Q Consensus 469 c~~L~~l~~----------l~~s~n~L~~~~p~~l~~l 496 (734)
|. ++.+|. ++++.|.|++.+|..+..+
T Consensus 432 Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 432 NQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred Cc-ccccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 65 445553 6678888888777665433
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=6.1e-20 Score=186.52 Aligned_cols=223 Identities=28% Similarity=0.419 Sum_probs=160.8
Q ss_pred hhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCC
Q 004707 222 KEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGL 301 (734)
Q Consensus 222 ~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L 301 (734)
+++..+..+.+|++.+|.. ..+|++++.+..++.|+.+.|+ ...+|+.++.+.+|+.|+.+.|.+.++|++++.+..|
T Consensus 62 ~dl~nL~~l~vl~~~~n~l-~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKL-SQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDL 139 (565)
T ss_pred HhhhcccceeEEEeccchh-hhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhh
Confidence 4556666677777777643 4556667777777777777764 4456777777777777777777777777777777777
Q ss_pred cEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecC
Q 004707 302 ESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDC 381 (734)
Q Consensus 302 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n 381 (734)
+.|+..+|+ +..+|++++++.+|..|++.+|.+.++|+..-+++.|++|+... +.++.+|+. ++.+.+|+.|+|..|
T Consensus 140 ~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhhhHHHHhhhc
Confidence 777777644 45667777777777777777777777777766677777777765 456777776 777777888888888
Q ss_pred CCCCCCccCCCCCCCcEEeeccCCCCccccccc-CCCCCcEEeeecCCCCCCCCC---CCCCCceEEecCCCCC
Q 004707 382 AVTDIPQEIGCLSSLEELDLSGNSFESLPVSIK-QLSQLSSLDLSDCNMLRSLPE---LPSCLGFLNLSGCNML 451 (734)
Q Consensus 382 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~n~~l~~lp~---~~~~L~~L~Ls~n~~l 451 (734)
++..+| .|++++.|++|+++.|.++.+|+... ++++|..|||.+|++ ++.|. ...+|++||+|+|.+.
T Consensus 217 ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 217 KIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred ccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCccc
Confidence 877777 67777777777777777777777664 777788888887764 44553 3366777888877555
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=9.2e-17 Score=185.74 Aligned_cols=223 Identities=26% Similarity=0.424 Sum_probs=145.1
Q ss_pred cCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCC
Q 004707 230 HNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGC 309 (734)
Q Consensus 230 l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~ 309 (734)
...|+++++. +..+|..+. ++|+.|+|++|.+. .+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|
T Consensus 180 ~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILG-LTTIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCC-cCcCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 4557777653 445665442 46778888777544 5665543 477888888888877776543 46778888876
Q ss_pred CCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc
Q 004707 310 SKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE 389 (734)
Q Consensus 310 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~ 389 (734)
.+. .+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++| .+..+|.. + .++|+.|++++|.++.+|..
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSLTALPET 322 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCccccCCcc
Confidence 644 6666553 467788888887777776654 47778888775 45556543 2 24677777777777777655
Q ss_pred CCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCC-CCCCCceEEecCCCCCCCCC-CCCcCCceEecc
Q 004707 390 IGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPE-LPSCLGFLNLSGCNMLQSLP-ELPLRLRRLRAG 467 (734)
Q Consensus 390 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~-~~~~L~~L~Ls~n~~l~~lp-~l~~~L~~L~l~ 467 (734)
+ .++|+.|++++|.++.+|..+. ++|+.|+|++|++. .+|. .+++|+.|+|++|.+. .+| .++.+|+.|+++
T Consensus 323 l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs 396 (754)
T PRK15370 323 L--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALT-NLPENLPAALQIMQAS 396 (754)
T ss_pred c--cccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhcCCcCEEECCCCcCC-CCCHhHHHHHHHHhhc
Confidence 4 3577777777777777776553 57777777777654 3443 4567777777777665 344 344556666666
Q ss_pred CCcCCCCCc
Q 004707 468 NCKLLQSLP 476 (734)
Q Consensus 468 ~c~~L~~l~ 476 (734)
+|. +..+|
T Consensus 397 ~N~-L~~LP 404 (754)
T PRK15370 397 RNN-LVRLP 404 (754)
T ss_pred cCC-cccCc
Confidence 653 33444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=1.5e-16 Score=183.97 Aligned_cols=221 Identities=24% Similarity=0.362 Sum_probs=176.4
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecC
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRG 308 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~ 308 (734)
.+..|++++|. +..+|..+. ++|+.|++++|.+ ..+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++
T Consensus 200 ~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCC-CCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 58889999985 457787653 6999999999865 46777654 479999999999999998764 5899999998
Q ss_pred CCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc
Q 004707 309 CSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ 388 (734)
Q Consensus 309 ~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~ 388 (734)
|++. .+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|. +..+|... .++|+.|++++|.++.+|.
T Consensus 272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 272 NKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPETL---PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred CccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCccc---cccceeccccCCccccCCh
Confidence 7654 6887664 589999999999999987654 579999999854 55676542 3689999999999999997
Q ss_pred cCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCC-------CcCC
Q 004707 389 EIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPEL-------PLRL 461 (734)
Q Consensus 389 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l-------~~~L 461 (734)
.+. ++|+.|++++|+++.+|..+. ++|+.|+|++|.+....+..+.+|+.|++++|++. .+|.. .+++
T Consensus 343 ~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 343 SLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQP 417 (754)
T ss_pred hhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCc
Confidence 763 799999999999999997663 68999999999876533345568999999999876 56642 2456
Q ss_pred ceEeccCCcC
Q 004707 462 RRLRAGNCKL 471 (734)
Q Consensus 462 ~~L~l~~c~~ 471 (734)
..|++.+++.
T Consensus 418 ~~L~L~~Npl 427 (754)
T PRK15370 418 TRIIVEYNPF 427 (754)
T ss_pred cEEEeeCCCc
Confidence 7888888764
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-18 Score=156.35 Aligned_cols=152 Identities=26% Similarity=0.413 Sum_probs=69.6
Q ss_pred CCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceee
Q 004707 250 KLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYIL 329 (734)
Q Consensus 250 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ 329 (734)
.+.+...|.|++|. +..+|..+..+.+|+.|++.+|+++++|.+++.++.|+.|+++-| .+..+|..||.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 34444444444432 222333344444444444444444444444444444444444432 2333444444444444444
Q ss_pred ccCcccc--cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCC
Q 004707 330 ADGSAIS--QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 330 l~~n~l~--~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 407 (734)
+.+|.+. .+|..+ ..++.|+.|.|++|.+.-+|..++.+++|+.|.+..|.+-
T Consensus 109 ltynnl~e~~lpgnf-------------------------f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNF-------------------------FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred ccccccccccCCcch-------------------------hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence 4444443 333333 3344444445555544445555555555555555555555
Q ss_pred cccccccCCCCCcEEeeecCC
Q 004707 408 SLPVSIKQLSQLSSLDLSDCN 428 (734)
Q Consensus 408 ~lp~~l~~l~~L~~L~L~~n~ 428 (734)
++|..++.++.|+.|.+.+|+
T Consensus 164 ~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hCcHHHHHHHHHHHHhcccce
Confidence 555555555555555555544
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-17 Score=151.72 Aligned_cols=147 Identities=29% Similarity=0.426 Sum_probs=103.7
Q ss_pred CcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCC--CCccCCCC
Q 004707 316 PDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTD--IPQEIGCL 393 (734)
Q Consensus 316 p~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l 393 (734)
|..+..+.+|+.|++.+|++.++|.+++.+++|+.|+++- +.+..+|.. |+.++.|+.|||++|++.+ +|..|..+
T Consensus 49 ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprg-fgs~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccc-cCCCchhhhhhccccccccccCCcchhHH
Confidence 3334444444444444455555555555555555555543 334445554 7778888888888888886 89999999
Q ss_pred CCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCC---CCCCCceEEecCCCCCCCCCCCCcCCceEeccCC
Q 004707 394 SSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPE---LPSCLGFLNLSGCNMLQSLPELPLRLRRLRAGNC 469 (734)
Q Consensus 394 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~---~~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~~c 469 (734)
+.|+-|.|+.|.++-+|..++++++|+.|.+.+|.++. +|. ....|+.|.+.+|++.. +|+.|..|++-+.
T Consensus 127 ~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~v----lppel~~l~l~~~ 200 (264)
T KOG0617|consen 127 TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTV----LPPELANLDLVGN 200 (264)
T ss_pred HHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeee----cChhhhhhhhhhh
Confidence 99999999999999999999999999999999998765 553 23678999999997653 3334444444433
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=7.6e-17 Score=179.73 Aligned_cols=236 Identities=28% Similarity=0.387 Sum_probs=106.8
Q ss_pred cCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCC
Q 004707 230 HNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGC 309 (734)
Q Consensus 230 l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~ 309 (734)
+++++++.++ +..+|.+++.+.+|+.|+...|.+ ..+|..+..+.+|+.|.+..|.++.+|+....+++|++|+|..|
T Consensus 243 l~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 3445555542 233445555555555555555433 44444455555555555555555555555555555555555553
Q ss_pred CCCCCCCcccC-CCC-ccceeeccCcccccCCccc-cCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC
Q 004707 310 SKLDKLPDNIG-NLE-SLAYILADGSAISQLPSSV-ADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI 386 (734)
Q Consensus 310 ~~~~~lp~~l~-~l~-~L~~L~l~~n~l~~lp~~i-~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l 386 (734)
+ +..+|+.+- .+. .|+.|+.+.|.+..+|..- ..++.|+.|.+.+|......-+. +.++.+|+.|+|++|.+..+
T Consensus 321 ~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 321 N-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred c-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccC
Confidence 3 233333111 000 0122222222222222100 01223344444443322222221 44555555555555555555
Q ss_pred Ccc-CCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCC--CCCceEEecCCCCCC-CCCC-CC-cC
Q 004707 387 PQE-IGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELP--SCLGFLNLSGCNMLQ-SLPE-LP-LR 460 (734)
Q Consensus 387 p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~--~~L~~L~Ls~n~~l~-~lp~-l~-~~ 460 (734)
|+. +.++..|++|+||||+++.+|..+..++.|++|...+|.++ .+|+.. +.|+.+|+|.|++.. .+|. .| ++
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~ 477 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPN 477 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence 543 44555555555555555555555555555555555554432 344322 445555555554432 2222 23 45
Q ss_pred CceEeccCCc
Q 004707 461 LRRLRAGNCK 470 (734)
Q Consensus 461 L~~L~l~~c~ 470 (734)
|++|++++++
T Consensus 478 LkyLdlSGN~ 487 (1081)
T KOG0618|consen 478 LKYLDLSGNT 487 (1081)
T ss_pred cceeeccCCc
Confidence 5555555554
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=1.3e-16 Score=177.89 Aligned_cols=214 Identities=25% Similarity=0.315 Sum_probs=131.0
Q ss_pred CCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeecc
Q 004707 252 KSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILAD 331 (734)
Q Consensus 252 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~ 331 (734)
.+|++++++.|. ...+|++++.+.+|+.|+..+|.++.+|..+...++|+.|.+..|. +..+|+..+.+++|++|+|.
T Consensus 241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhh-hhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeeh
Confidence 344445554432 2233444555555555555555555555444444555555544432 33444444445555555555
Q ss_pred CcccccCCccccCC--CCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCC-CCccCCCCCCCcEEeeccCCCCc
Q 004707 332 GSAISQLPSSVADS--NVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTD-IPQEIGCLSSLEELDLSGNSFES 408 (734)
Q Consensus 332 ~n~l~~lp~~i~~l--~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~ 408 (734)
.|.+..+|..+..- ..|..|+.+. +.+..+|...-..++.|+.|.+.+|.+++ .-+.+.++.+|+.|+|++|++.+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 55555544432211 1123333332 23333333222346679999999999997 44467889999999999999999
Q ss_pred cccc-ccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC--CcCCceEeccCCc
Q 004707 409 LPVS-IKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL--PLRLRRLRAGNCK 470 (734)
Q Consensus 409 lp~~-l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l--~~~L~~L~l~~c~ 470 (734)
+|++ +.++..|+.|+|++|++ +.+|.. ..+|++|...+|.+. ..|++ .+.|+.+|++.+.
T Consensus 398 fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence 9985 58999999999999985 456643 367889999888776 66763 4688999987553
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=5.6e-16 Score=157.87 Aligned_cols=219 Identities=21% Similarity=0.222 Sum_probs=164.2
Q ss_pred eeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeec-CCCcccCcc-ccCCCCCcEeeecCC
Q 004707 232 KLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQR-TAITELPSS-FENLLGLESLSVRGC 309 (734)
Q Consensus 232 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~-n~l~~lp~~-i~~l~~L~~L~Ls~~ 309 (734)
.++|..|.....-|.+|+.+++||.|||+.|.+...-|+.|.++..|..|-+.+ |+|+.+|.. |++|..|+-|.+.-|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 477777766555566799999999999999988888899999998888887766 899999876 888888888888887
Q ss_pred CCCCCCCcccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCCCCCc---------------------------
Q 004707 310 SKLDKLPDNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCRNLVS--------------------------- 361 (734)
Q Consensus 310 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--------------------------- 361 (734)
...-...+.+..+++|..|.+..|.+..++. ++..+..++.+.+..|..+..
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 7766667778888888888888888887776 666777777776655442111
Q ss_pred ----------------------------------cCcccCCCCCCccEEEeecCCCCCC-CccCCCCCCCcEEeeccCCC
Q 004707 362 ----------------------------------LPPLLLSGLSSLECLHLRDCAVTDI-PQEIGCLSSLEELDLSGNSF 406 (734)
Q Consensus 362 ----------------------------------l~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l 406 (734)
.|...|..+++|++|+|++|+++.+ +.+|..+..+++|.|..|++
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence 2222356778888888888888875 44577788888888888888
Q ss_pred Cccccc-ccCCCCCcEEeeecCCCCCCCCCCC---CCCceEEecCCCC
Q 004707 407 ESLPVS-IKQLSQLSSLDLSDCNMLRSLPELP---SCLGFLNLSGCNM 450 (734)
Q Consensus 407 ~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~~~---~~L~~L~Ls~n~~ 450 (734)
..+... +.++..|+.|+|.+|++....|..+ .+|.+|+|-.|++
T Consensus 311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 766543 4677888888888888776666544 4566777776654
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=7.9e-15 Score=156.55 Aligned_cols=205 Identities=21% Similarity=0.214 Sum_probs=102.5
Q ss_pred HHHHhhcCeeecCCcccc----ccccccccCCCCCcEEEecCCcCCC------cCchhhhCCCcCcEEEeecCCCc-ccC
Q 004707 224 IRRVLKHNKLDLRDCRRL----KRISTRFCKLKSLVDLFLHGCLNLE------RFPEILEKMEHLKHIYLQRTAIT-ELP 292 (734)
Q Consensus 224 i~~l~~l~~L~L~~~~~~----~~~p~~~~~l~~L~~L~L~~~~~~~------~~p~~~~~l~~L~~L~L~~n~l~-~lp 292 (734)
+..+..++.+++++|... ..++..+...++|+.|+++++...+ .++..+..+++|++|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344555666777766542 2344445566667777776654431 12344555666666666666665 222
Q ss_pred ccccCC---CCCcEeeecCCCCCC----CCCcccCCC-CccceeeccCcccc-----cCCccccCCCCCcEEEcCCCCCC
Q 004707 293 SSFENL---LGLESLSVRGCSKLD----KLPDNIGNL-ESLAYILADGSAIS-----QLPSSVADSNVLRYLWFPRCRNL 359 (734)
Q Consensus 293 ~~i~~l---~~L~~L~Ls~~~~~~----~lp~~l~~l-~~L~~L~l~~n~l~-----~lp~~i~~l~~L~~L~l~~~~~l 359 (734)
..+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+++|+.|++++|...
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 223333 336666666665442 222334444 56666666666655 23334445555666666654422
Q ss_pred Cc----cCcccCCCCCCccEEEeecCCCCC-----CCccCCCCCCCcEEeeccCCCCcc-cccc-----cCCCCCcEEee
Q 004707 360 VS----LPPLLLSGLSSLECLHLRDCAVTD-----IPQEIGCLSSLEELDLSGNSFESL-PVSI-----KQLSQLSSLDL 424 (734)
Q Consensus 360 ~~----l~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l-----~~l~~L~~L~L 424 (734)
.. ++.. +..+++|+.|++++|.+.+ ++..+..+++|++|++++|.++.. +..+ ...+.|++|++
T Consensus 179 ~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 179 DAGIRALAEG-LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred hHHHHHHHHH-HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 11 1111 2333456666666665542 233344455566666666655421 0011 11345566666
Q ss_pred ecCCC
Q 004707 425 SDCNM 429 (734)
Q Consensus 425 ~~n~~ 429 (734)
++|.+
T Consensus 258 ~~n~i 262 (319)
T cd00116 258 SCNDI 262 (319)
T ss_pred cCCCC
Confidence 65554
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=9.1e-15 Score=156.07 Aligned_cols=237 Identities=23% Similarity=0.220 Sum_probs=153.3
Q ss_pred eecCCcccc-ccccccccCCCCCcEEEecCCcCCC----cCchhhhCCCcCcEEEeecCCCcc-------cCccccCCCC
Q 004707 233 LDLRDCRRL-KRISTRFCKLKSLVDLFLHGCLNLE----RFPEILEKMEHLKHIYLQRTAITE-------LPSSFENLLG 300 (734)
Q Consensus 233 L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~~~~~~----~~p~~~~~l~~L~~L~L~~n~l~~-------lp~~i~~l~~ 300 (734)
|+|..+... ...+..+..+.+|+.|++++|.... .++..+...+.|++|+++++.+.. ++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445444433 3334445667778888888876533 255566677778888888876652 2344667788
Q ss_pred CcEeeecCCCCCCCCCcccCCCCc---cceeeccCcccc-----cCCccccCC-CCCcEEEcCCCCCCCc----cCcccC
Q 004707 301 LESLSVRGCSKLDKLPDNIGNLES---LAYILADGSAIS-----QLPSSVADS-NVLRYLWFPRCRNLVS----LPPLLL 367 (734)
Q Consensus 301 L~~L~Ls~~~~~~~lp~~l~~l~~---L~~L~l~~n~l~-----~lp~~i~~l-~~L~~L~l~~~~~l~~----l~~~~l 367 (734)
|+.|++++|.+.+..+..+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|..... ++. .+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-AL 161 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HH
Confidence 888888888776655555554444 888888888776 233455666 7888888888764421 111 24
Q ss_pred CCCCCccEEEeecCCCCC-----CCccCCCCCCCcEEeeccCCCC-----cccccccCCCCCcEEeeecCCCCCC-----
Q 004707 368 SGLSSLECLHLRDCAVTD-----IPQEIGCLSSLEELDLSGNSFE-----SLPVSIKQLSQLSSLDLSDCNMLRS----- 432 (734)
Q Consensus 368 ~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n~~l~~----- 432 (734)
..+++|++|++++|.+++ ++..+..+++|+.|++++|.++ .++..+..+++|++|++++|.+.+.
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 566778888888888773 3344555678888888888776 3444566778888888888876531
Q ss_pred ---CCCCCCCCceEEecCCCCC--------CCCCCCCcCCceEeccCCcC
Q 004707 433 ---LPELPSCLGFLNLSGCNML--------QSLPELPLRLRRLRAGNCKL 471 (734)
Q Consensus 433 ---lp~~~~~L~~L~Ls~n~~l--------~~lp~l~~~L~~L~l~~c~~ 471 (734)
++.....|+.|++++|.+. ..++.. .+|+++++++|..
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l 290 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKF 290 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCC
Confidence 1122367888888888764 122222 4677777776653
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=8.4e-13 Score=140.63 Aligned_cols=195 Identities=27% Similarity=0.378 Sum_probs=161.2
Q ss_pred HhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeee
Q 004707 227 VLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSV 306 (734)
Q Consensus 227 l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L 306 (734)
+..-...||+.|++ ..+|..++.+..|+.|.|+.|. ...+|..+.++..|.+|+|+.|++..+|..++.|+ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF-SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 34445578888754 5678888888999999998865 56788889999999999999999999999988876 899999
Q ss_pred cCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC
Q 004707 307 RGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI 386 (734)
Q Consensus 307 s~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l 386 (734)
++ +.++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|++..| .+..+|+. +.. -.|..||++.|++..|
T Consensus 151 sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~-LpLi~lDfScNkis~i 226 (722)
T KOG0532|consen 151 SN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCS-LPLIRLDFSCNKISYL 226 (722)
T ss_pred ec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhC-CceeeeecccCceeec
Confidence 87 45788999999999999999999999999999999999999999884 56667776 443 3588899999999999
Q ss_pred CccCCCCCCCcEEeeccCCCCcccccc---cCCCCCcEEeeecCC
Q 004707 387 PQEIGCLSSLEELDLSGNSFESLPVSI---KQLSQLSSLDLSDCN 428 (734)
Q Consensus 387 p~~l~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L~~L~L~~n~ 428 (734)
|-.|..|+.|++|-|.+|.+++=|..| +...=-++|+..-|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 999999999999999999999888766 344446788888874
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=1.9e-11 Score=134.54 Aligned_cols=179 Identities=31% Similarity=0.450 Sum_probs=99.4
Q ss_pred cCCCCCcEEEecCCcCCCcCchhhhCCC-cCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccce
Q 004707 249 CKLKSLVDLFLHGCLNLERFPEILEKME-HLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAY 327 (734)
Q Consensus 249 ~~l~~L~~L~L~~~~~~~~~p~~~~~l~-~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 327 (734)
..++.++.|++.++. ...+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 344556666665543 333444444443 5666666666666665555666666666666643 3344444445566666
Q ss_pred eeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCC
Q 004707 328 ILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 328 L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 407 (734)
|++++|.+..+|..+.....|+.|.+++|.....+.. +.++.++..|.+.+|++..++..++.+++|+.|++++|.++
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 6666666666666555555566666655432222222 45555555555555555555555555666666666666666
Q ss_pred cccccccCCCCCcEEeeecCCCCCC
Q 004707 408 SLPVSIKQLSQLSSLDLSDCNMLRS 432 (734)
Q Consensus 408 ~lp~~l~~l~~L~~L~L~~n~~l~~ 432 (734)
.++. ++.+.+|+.|++++|.....
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccc-ccccCccCEEeccCcccccc
Confidence 5554 55556666666666555443
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.16 E-value=3.1e-11 Score=142.33 Aligned_cols=250 Identities=23% Similarity=0.257 Sum_probs=155.6
Q ss_pred HHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCC-cccCccccCCCCCc
Q 004707 224 IRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAI-TELPSSFENLLGLE 302 (734)
Q Consensus 224 i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l-~~lp~~i~~l~~L~ 302 (734)
+..++.|..|||++|...+.+|..+++|-+||+|+|+++. ...+|..++++..|.+|++..+.- ..+|.....|++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 6778999999999999999999999999999999999975 558999999999999999999754 45555566699999
Q ss_pred EeeecCCCC--CCCCCcccCCCCccceeeccCcccccCCccccCCCCCc----EEEcCCCCCCCccCcccCCCCCCccEE
Q 004707 303 SLSVRGCSK--LDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLR----YLWFPRCRNLVSLPPLLLSGLSSLECL 376 (734)
Q Consensus 303 ~L~Ls~~~~--~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~----~L~l~~~~~l~~l~~~~l~~l~~L~~L 376 (734)
+|.+..... ....-..+.++.+|+.+....... .+-..+..+..|. .+.+.++......+. +..+.+|+.|
T Consensus 646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~--~~~l~~L~~L 722 (889)
T KOG4658|consen 646 VLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISS--LGSLGNLEEL 722 (889)
T ss_pred EEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccceeecc--cccccCcceE
Confidence 999987431 111112234455555554433332 1112222333332 333333332222222 6788999999
Q ss_pred EeecCCCCCCCc-cCCC------CCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCC---CCCceEEec
Q 004707 377 HLRDCAVTDIPQ-EIGC------LSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELP---SCLGFLNLS 446 (734)
Q Consensus 377 ~Ls~n~l~~lp~-~l~~------l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~---~~L~~L~Ls 446 (734)
.+.+|.+.++.. .... ++++..+.+.++..-..+.+..-.++|+.|.+..|.....+.+.. ..+..+.+.
T Consensus 723 ~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~ 802 (889)
T KOG4658|consen 723 SILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILP 802 (889)
T ss_pred EEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEec
Confidence 999999875322 1111 233444444444444455555677899999999998877554322 122222222
Q ss_pred CCCC-----------CC---CCCCCCcCCceEeccCCcCCCCCcc
Q 004707 447 GCNM-----------LQ---SLPELPLRLRRLRAGNCKLLQSLPE 477 (734)
Q Consensus 447 ~n~~-----------l~---~lp~l~~~L~~L~l~~c~~L~~l~~ 477 (734)
.+.+ .. .+|-..+.++.+.+..|+.++.+|.
T Consensus 803 f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 803 FNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 2211 11 1122223477777777877777773
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=4.7e-12 Score=129.59 Aligned_cols=209 Identities=20% Similarity=0.269 Sum_probs=150.7
Q ss_pred cCchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCc-hhhhCCCcCcEEEeecCCCcccCcc-cc
Q 004707 219 WDPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFP-EILEKMEHLKHIYLQRTAITELPSS-FE 296 (734)
Q Consensus 219 ~~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~lp~~-i~ 296 (734)
..+..+.++.+|+.|||++|.....-|.+|.++++|..|.+.+++.+..+| ..|+++..|+.|.+.-|++..++.. +.
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHH
Confidence 456788899999999999999988899999999999999998855555555 3456666666666666666544332 55
Q ss_pred CCCCCcEeeecCCCCCCCCCc-ccCCCCccceeeccCcc------------------------------------cc---
Q 004707 297 NLLGLESLSVRGCSKLDKLPD-NIGNLESLAYILADGSA------------------------------------IS--- 336 (734)
Q Consensus 297 ~l~~L~~L~Ls~~~~~~~lp~-~l~~l~~L~~L~l~~n~------------------------------------l~--- 336 (734)
.|++|..|.+.+|.+ ..++. .+..+.+++.+.+..|. +.
T Consensus 162 dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 162 DLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred Hhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 555555555555432 22222 34444444444332221 11
Q ss_pred ---------cC--------------C-ccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc-cCC
Q 004707 337 ---------QL--------------P-SSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ-EIG 391 (734)
Q Consensus 337 ---------~l--------------p-~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~ 391 (734)
++ | .-+..+++|++|++++ +.++.+.+..|.++..+++|.|..|++..+.. .|.
T Consensus 241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~ 319 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ 319 (498)
T ss_pred hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh
Confidence 01 1 1257789999999998 56778888889999999999999999987543 478
Q ss_pred CCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCC
Q 004707 392 CLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~ 429 (734)
++..|+.|+|.+|+|+.+ |-.+..+.+|.+|+|-.|++
T Consensus 320 ~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 320 GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 899999999999999955 55788899999999988876
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=2.4e-12 Score=137.16 Aligned_cols=209 Identities=27% Similarity=0.406 Sum_probs=171.5
Q ss_pred eecCCccccccccccc--cCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCC
Q 004707 233 LDLRDCRRLKRISTRF--CKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCS 310 (734)
Q Consensus 233 L~L~~~~~~~~~p~~~--~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~ 310 (734)
|.|++ ..++.+|..- -.+..-...||+.|. ...+|..+..+..|+.+.|..|.+..+|..++++..|.+|+|+.|.
T Consensus 55 l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSG-RRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccc-chhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 55544 3445555322 234455667888875 4567888888889999999999999999999999999999999965
Q ss_pred CCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccC
Q 004707 311 KLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEI 390 (734)
Q Consensus 311 ~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l 390 (734)
+..+|..+..|+ |+.|.+++|+++.+|..++.+..|..|+.+.| .+.++|+. ++++.+|+.|.+..|++..+|..+
T Consensus 133 -lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~lp~El 208 (722)
T KOG0532|consen 133 -LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPEEL 208 (722)
T ss_pred -hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhhCCHHH
Confidence 677888888876 89999999999999999999999999999985 56677776 889999999999999999999998
Q ss_pred CCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCC-C-----CCCCceEEecCCC
Q 004707 391 GCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPE-L-----PSCLGFLNLSGCN 449 (734)
Q Consensus 391 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~-~-----~~~L~~L~Ls~n~ 449 (734)
..+ .|..||+++|+++.||..+.+++.|++|.|.+|.+. +.|. + ..-.++|+..-|+
T Consensus 209 ~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 209 CSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 855 589999999999999999999999999999999854 3442 1 1235677777774
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.7e-10 Score=127.09 Aligned_cols=197 Identities=28% Similarity=0.372 Sum_probs=152.0
Q ss_pred EEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCC-CCcEeeecCCCCCCCCCcccCCCCccceeeccCcc
Q 004707 256 DLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLL-GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSA 334 (734)
Q Consensus 256 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~-~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~ 334 (734)
.|++..+...... ..+..++.++.|++.+|.++.+|.....+. +|+.|++++|. +..+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 5777776543333 335556789999999999999998888885 99999999865 55666678899999999999999
Q ss_pred cccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCccccccc
Q 004707 335 ISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIK 414 (734)
Q Consensus 335 l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~ 414 (734)
+..+|...+.++.|+.|++++ +.+..+|.. ...+..|++|.+++|.+..++..+..+.++..|.+.+|++..++..++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSG-NKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhheeccC-CccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence 999998888888999999988 557777764 345566888999988777777778888888888888888888888888
Q ss_pred CCCCCcEEeeecCCCCCCCC-CCCCCCceEEecCCCCCCCCCC
Q 004707 415 QLSQLSSLDLSDCNMLRSLP-ELPSCLGFLNLSGCNMLQSLPE 456 (734)
Q Consensus 415 ~l~~L~~L~L~~n~~l~~lp-~~~~~L~~L~Ls~n~~l~~lp~ 456 (734)
.+++|+.|++++|.+...-+ ....+|+.|++++|.+...+|.
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceeccccccccccccccccCccCEEeccCccccccchh
Confidence 88889999998887654332 1235677788887766655543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.2e-11 Score=125.24 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=80.0
Q ss_pred HHhhcCeeecCCcccccccc--ccccCCCCCcEEEecCCcCCC--cCchhhhCCCcCcEEEeecCCCcccCcc--ccCCC
Q 004707 226 RVLKHNKLDLRDCRRLKRIS--TRFCKLKSLVDLFLHGCLNLE--RFPEILEKMEHLKHIYLQRTAITELPSS--FENLL 299 (734)
Q Consensus 226 ~l~~l~~L~L~~~~~~~~~p--~~~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~lp~~--i~~l~ 299 (734)
++.+|+...|.++.. ...+ .....+++++.|||++|-+.. .+-.....+++|+.|+|+.|.+.....+ -..++
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 344555555554432 2222 134455566666666553322 2223445555566666665555422221 12344
Q ss_pred CCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEee
Q 004707 300 GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLR 379 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls 379 (734)
+|+.|.|++|.+... .+-.-+..+|+|+.|.+.+|+.+...... ...+..|++|+|+
T Consensus 198 ~lK~L~l~~CGls~k----------------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWK----------------------DVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLS 254 (505)
T ss_pred hhheEEeccCCCCHH----------------------HHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhcccc
Confidence 555555555544311 22222333444444444444311111110 2234455555555
Q ss_pred cCCCCCCC--ccCCCCCCCcEEeeccCCCCc--cccc-----ccCCCCCcEEeeecCCC
Q 004707 380 DCAVTDIP--QEIGCLSSLEELDLSGNSFES--LPVS-----IKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 380 ~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~--lp~~-----l~~l~~L~~L~L~~n~~ 429 (734)
+|++.+++ ...+.++.|+.|+++.|++++ +|+. ...+++|++|++..|++
T Consensus 255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 55555544 234555555555555555552 2222 23345555555555544
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.9e-11 Score=123.86 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=125.4
Q ss_pred hhHHHHhhcCeeecCCccccc--cccccccCCCCCcEEEecCCcCCCcCch-hhhCCCcCcEEEeecCCCc--ccCcccc
Q 004707 222 KEIRRVLKHNKLDLRDCRRLK--RISTRFCKLKSLVDLFLHGCLNLERFPE-ILEKMEHLKHIYLQRTAIT--ELPSSFE 296 (734)
Q Consensus 222 ~~i~~l~~l~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~L~~n~l~--~lp~~i~ 296 (734)
.....++..+.|||+.|-... .+-....+|++|+.|+|+.|...--..+ .-..+++|+.|.|+.|.++ .+-....
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 356678889999999985433 2223356899999999999865432211 1236789999999999998 3434456
Q ss_pred CCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEE
Q 004707 297 NLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECL 376 (734)
Q Consensus 297 ~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L 376 (734)
.+|+|+.|+|.+|.....-......+..|++|+|++|.+-..+.. ...+.++.|+.|
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----------------------~~~~~l~~L~~L 276 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----------------------YKVGTLPGLNQL 276 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----------------------cccccccchhhh
Confidence 789999999999864443333445566777777777766654421 114556666666
Q ss_pred EeecCCCCC--CCcc-----CCCCCCCcEEeeccCCCCcccc--cccCCCCCcEEeeecCCCCC
Q 004707 377 HLRDCAVTD--IPQE-----IGCLSSLEELDLSGNSFESLPV--SIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 377 ~Ls~n~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~~l~ 431 (734)
+++.|.+.+ +|+. ...+++|++|+++.|++...++ .+..+++|+.|.+..|.+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 666666665 3333 3457788888888888865552 45566777777777776544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.8e-10 Score=113.86 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=130.7
Q ss_pred ccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeec-CCCCCCCCCcccCCC
Q 004707 244 ISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVR-GCSKLDKLPDNIGNL 322 (734)
Q Consensus 244 ~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls-~~~~~~~lp~~l~~l 322 (734)
+|-.+.-+++|..+.++.|. .+.+-+....-+.|+.+...++.+...|.-+ ....+.-+.-+ +....|..-..+...
T Consensus 206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccccccccccc-chhhhcCccCCCCCccCCceEEecchH
Confidence 34445567788888888874 2233333333456777777776665433211 11111111111 011122233334455
Q ss_pred CccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeec
Q 004707 323 ESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLS 402 (734)
Q Consensus 323 ~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls 402 (734)
+.|++|++++|.|+++..++.-++.++.|+++.|. +..+.. +..+++|+.||||+|.++++..+-..+-+++.|.|+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 67889999999999999888888999999998854 333433 667888999999999888776665667788899999
Q ss_pred cCCCCcccccccCCCCCcEEeeecCCCCC--CCC--CCCCCCceEEecCCCCCC
Q 004707 403 GNSFESLPVSIKQLSQLSSLDLSDCNMLR--SLP--ELPSCLGFLNLSGCNMLQ 452 (734)
Q Consensus 403 ~n~l~~lp~~l~~l~~L~~L~L~~n~~l~--~lp--~~~~~L~~L~Ls~n~~l~ 452 (734)
+|.+.++. .++.+-+|..||+++|++-. ... ..+++|+.+.|.+|++.+
T Consensus 361 ~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99888775 77888888999999887632 111 123556666666665543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.2e-10 Score=113.26 Aligned_cols=182 Identities=20% Similarity=0.198 Sum_probs=99.3
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCC---cCch--------------------hhhCCCc
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLE---RFPE--------------------ILEKMEH 277 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~---~~p~--------------------~~~~l~~ 277 (734)
+-++..+.++..+.++.|.-- .+-.....-+.|+++.+....... -+|. .+.....
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 456666777888888887532 222222244567777765532211 0111 1111233
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCC
Q 004707 278 LKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCR 357 (734)
Q Consensus 278 L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~ 357 (734)
|++|||++|.|+.+..+..-+|.++.|++++ |.+..+.. +..+++|+.|+|++|
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~------------------------N~i~~v~n-La~L~~L~~LDLS~N- 339 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQ------------------------NRIRTVQN-LAELPQLQLLDLSGN- 339 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccc------------------------cceeeehh-hhhcccceEeecccc-
Confidence 4555555555555554444445555555555 44444433 444445555555542
Q ss_pred CCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCccc--ccccCCCCCcEEeeecCCCCC
Q 004707 358 NLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLP--VSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 358 ~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~~l~ 431 (734)
.+..+..+ -.++.+.++|.|++|.+.++ ..++.+-+|..||+++|+|..+. ..|+++|.|+.|.|.+|++.+
T Consensus 340 ~Ls~~~Gw-h~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 340 LLAECVGW-HLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHhhhhh-HhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 22222221 23456667777777766554 34566777777888888777543 367788888888888887654
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=9.2e-10 Score=104.89 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=18.8
Q ss_pred CCCccEEEeecCCCCCCC--ccCCCCCCCcEEeeccCCCCcccc----cccCCCCCcEEeee
Q 004707 370 LSSLECLHLRDCAVTDIP--QEIGCLSSLEELDLSGNSFESLPV----SIKQLSQLSSLDLS 425 (734)
Q Consensus 370 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~ 425 (734)
+++|++|+|++|++.++. ..++.+++|+.|+|.+|.++.-+. -+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 344444444444444321 223445555555555555553322 23455555555543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=2.7e-09 Score=101.70 Aligned_cols=105 Identities=25% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCccceeeccCcccccCCcccc-CCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccC-CCCCCCcEE
Q 004707 322 LESLAYILADGSAISQLPSSVA-DSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEI-GCLSSLEEL 399 (734)
Q Consensus 322 l~~L~~L~l~~n~l~~lp~~i~-~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L 399 (734)
..++++|+|.+|.|..+. .++ .+.+|+.|++++| .+..++. +..++.|++|++++|.++++++.+ ..+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 334455555555555442 222 3444444554442 2333332 556677777777777777765544 346777777
Q ss_pred eeccCCCCcccc--cccCCCCCcEEeeecCCCC
Q 004707 400 DLSGNSFESLPV--SIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 400 ~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~~l 430 (734)
++++|++..+.. .+..+++|+.|+|.+|+..
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777764432 4456677777777776654
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-09 Score=111.07 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=119.0
Q ss_pred CCCCCcEEEecCCcCCCc----CchhhhCCCcCcEEEeecC---CC-cccCcc-------ccCCCCCcEeeecCCCCCCC
Q 004707 250 KLKSLVDLFLHGCLNLER----FPEILEKMEHLKHIYLQRT---AI-TELPSS-------FENLLGLESLSVRGCSKLDK 314 (734)
Q Consensus 250 ~l~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~n---~l-~~lp~~-------i~~l~~L~~L~Ls~~~~~~~ 314 (734)
.+..++.|+|+||.+... +...+.+.++|+..+++.- ++ .++|+. +...+.|++|+||+|-+-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 445555555555544322 2233444455555555541 11 133332 33445666666666655433
Q ss_pred CCcc----cCCCCccceeeccCcccccC--------------CccccCCCCCcEEEcCCCCCCCccCc----ccCCCCCC
Q 004707 315 LPDN----IGNLESLAYILADGSAISQL--------------PSSVADSNVLRYLWFPRCRNLVSLPP----LLLSGLSS 372 (734)
Q Consensus 315 lp~~----l~~l~~L~~L~l~~n~l~~l--------------p~~i~~l~~L~~L~l~~~~~l~~l~~----~~l~~l~~ 372 (734)
-+.. +.++..|++|+|.+|.+... ..-++.-++|+.+....|+ +..-+. ..+...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccc
Confidence 3322 34566667777766666521 1223455677777776644 333221 12455678
Q ss_pred ccEEEeecCCCCC-----CCccCCCCCCCcEEeeccCCCC-----cccccccCCCCCcEEeeecCCCCC--------CCC
Q 004707 373 LECLHLRDCAVTD-----IPQEIGCLSSLEELDLSGNSFE-----SLPVSIKQLSQLSSLDLSDCNMLR--------SLP 434 (734)
Q Consensus 373 L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n~~l~--------~lp 434 (734)
|+.+.++.|.|.. +-..+..+++|+.|||..|-|+ .+...+..+++|+.|++++|.+.. .+.
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 8888888888763 3345778888999999988887 344556778888899998887643 233
Q ss_pred CCCCCCceEEecCCCCC
Q 004707 435 ELPSCLGFLNLSGCNML 451 (734)
Q Consensus 435 ~~~~~L~~L~Ls~n~~l 451 (734)
...++|+.|.+.+|.+.
T Consensus 267 ~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccCCCCceeccCcchhH
Confidence 45678888888888664
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=4.3e-08 Score=113.46 Aligned_cols=89 Identities=26% Similarity=0.407 Sum_probs=45.5
Q ss_pred CcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCc-ccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccC
Q 004707 254 LVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAIT-ELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADG 332 (734)
Q Consensus 254 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~ 332 (734)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|+.++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555555555555555555555555555555554 4444455555555555555555555555555555555555555
Q ss_pred cccc-cCCccc
Q 004707 333 SAIS-QLPSSV 342 (734)
Q Consensus 333 n~l~-~lp~~i 342 (734)
|.+. .+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 4444 444433
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.63 E-value=2.3e-09 Score=108.82 Aligned_cols=222 Identities=19% Similarity=0.212 Sum_probs=156.5
Q ss_pred hhcCeeecCCccccc----cccccccCCCCCcEEEecCCcCCCc----Cch-------hhhCCCcCcEEEeecCCCc--c
Q 004707 228 LKHNKLDLRDCRRLK----RISTRFCKLKSLVDLFLHGCLNLER----FPE-------ILEKMEHLKHIYLQRTAIT--E 290 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~----~~p~~~~~l~~L~~L~L~~~~~~~~----~p~-------~~~~l~~L~~L~L~~n~l~--~ 290 (734)
..+..++|++|..-. .+...+.+.++|+..++++- +.+. +|+ .+..+++|++|+||.|.+. .
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 356779999987543 34455778889999999873 3433 333 3456779999999999886 2
Q ss_pred c---CccccCCCCCcEeeecCCCCCCC-------------CCcccCCCCccceeeccCcccccC-----CccccCCCCCc
Q 004707 291 L---PSSFENLLGLESLSVRGCSKLDK-------------LPDNIGNLESLAYILADGSAISQL-----PSSVADSNVLR 349 (734)
Q Consensus 291 l---p~~i~~l~~L~~L~Ls~~~~~~~-------------lp~~l~~l~~L~~L~l~~n~l~~l-----p~~i~~l~~L~ 349 (734)
+ -.-+.++..|++|.|.+|.+-.. ...-.++-++|+++...+|.+..- ...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 2 22367789999999999865321 112245668899999999988744 34566778999
Q ss_pred EEEcCCCCCCCc---cCcccCCCCCCccEEEeecCCCCC-----CCccCCCCCCCcEEeeccCCCCc-----ccccc-cC
Q 004707 350 YLWFPRCRNLVS---LPPLLLSGLSSLECLHLRDCAVTD-----IPQEIGCLSSLEELDLSGNSFES-----LPVSI-KQ 415 (734)
Q Consensus 350 ~L~l~~~~~l~~---l~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l-~~ 415 (734)
.+.++.|..-.. +-...+..+++|+.|||.+|.++. +...+..+++|+.|++++|.++. +-..+ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 999988653211 112226789999999999999874 45567778999999999998872 33333 45
Q ss_pred CCCCcEEeeecCCCCCCCC-------CCCCCCceEEecCCCC
Q 004707 416 LSQLSSLDLSDCNMLRSLP-------ELPSCLGFLNLSGCNM 450 (734)
Q Consensus 416 l~~L~~L~L~~n~~l~~lp-------~~~~~L~~L~Ls~n~~ 450 (734)
.++|+.|.+.+|.+...-- .-.+.|..|+|++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7899999999998754110 1145677888888855
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=5.1e-08 Score=112.91 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=92.6
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCc-ccCccccCCCCCcEeeec
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAIT-ELPSSFENLLGLESLSVR 307 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~Ls 307 (734)
.+..|+|++|...+.+|..++++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.++ .+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677999999999999999999999999999999999999999999999999999999998 789999999999999999
Q ss_pred CCCCCCCCCcccCCC-CccceeeccCc
Q 004707 308 GCSKLDKLPDNIGNL-ESLAYILADGS 333 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l-~~L~~L~l~~n 333 (734)
+|.+.+.+|..++.+ .++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 999999999987653 23444444444
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=2.2e-07 Score=99.18 Aligned_cols=158 Identities=22% Similarity=0.336 Sum_probs=92.6
Q ss_pred ccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccC-cccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCc
Q 004707 295 FENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADG-SAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSL 373 (734)
Q Consensus 295 i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~-n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L 373 (734)
+..+.+++.|++++| .+..+|. -..+|+.|.+++ +.++.+|..+ .++|+.|++++|..+..+|+ +|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------cc
Confidence 445678888888887 5566662 223577887776 4555666554 25778888887766666654 46
Q ss_pred cEEEeecCCCCCCCccCCCCCCCcEEeeccCCCC---cccccccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCC
Q 004707 374 ECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFE---SLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNM 450 (734)
Q Consensus 374 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~ 450 (734)
+.|+++++....++. -.++|+.|.+.+++.. .+|.. -.++|++|++++|......+.+|.+|+.|+++.|..
T Consensus 115 e~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~ 189 (426)
T PRK15386 115 RSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQK 189 (426)
T ss_pred ceEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEeccccc
Confidence 667776655433221 0234666666443211 22211 125788888888876643334667888888876532
Q ss_pred CC---CCCCCCcCCceEeccCCcC
Q 004707 451 LQ---SLPELPLRLRRLRAGNCKL 471 (734)
Q Consensus 451 l~---~lp~l~~~L~~L~l~~c~~ 471 (734)
.. ....+|.++ .|++.+|-.
T Consensus 190 ~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 190 TTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred ccccCccccccccc-Eechhhhcc
Confidence 11 122345566 777777644
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.49 E-value=4.8e-07 Score=96.59 Aligned_cols=32 Identities=34% Similarity=0.373 Sum_probs=16.7
Q ss_pred CCCcEEeeccCCCCcccccccCCCCCcEEeeecC
Q 004707 394 SSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDC 427 (734)
Q Consensus 394 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 427 (734)
++|++|++++|....+|..+. .+|+.|.++.|
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 456666666555544443332 35666666544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=5.2e-08 Score=107.74 Aligned_cols=197 Identities=25% Similarity=0.274 Sum_probs=130.4
Q ss_pred HHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEee
Q 004707 226 RVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLS 305 (734)
Q Consensus 226 ~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 305 (734)
.+..+..+++..+.... +-..+..+++|+.|++.+|.+.+ +...+..+++|++|++++|.|+.+.. +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc-hhhccchhhhe
Confidence 34444455565554333 22336678888999998876543 33336778889999999998887754 66777788999
Q ss_pred ecCCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCC
Q 004707 306 VRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVT 384 (734)
Q Consensus 306 Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~ 384 (734)
+++|.+. .++. +..+++|+.+++++|.+..+... ...+.+|+.+.+.+|. +..+.. +..+..+..+++..|.++
T Consensus 147 l~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLIS-DISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcch-hccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce
Confidence 9887543 3333 55688888888888888877664 5677777777777744 222222 334445555577777766
Q ss_pred CCCccCCCCCC--CcEEeeccCCCCcccccccCCCCCcEEeeecCCCCC
Q 004707 385 DIPQEIGCLSS--LEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 385 ~lp~~l~~l~~--L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~ 431 (734)
.+- .+..+.. |+.+++++|.+..++..+..+..+..|++.+|+...
T Consensus 222 ~~~-~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 222 KLE-GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ecc-CcccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 532 1222333 788888888888776677777788888888776543
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.6e-07 Score=72.22 Aligned_cols=59 Identities=41% Similarity=0.637 Sum_probs=45.1
Q ss_pred CCccEEEeecCCCCCCCc-cCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCC
Q 004707 371 SSLECLHLRDCAVTDIPQ-EIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 371 ~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~ 429 (734)
++|++|++++|+++.+|. .+..+++|++|++++|.++.+|+ .+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467788888888887764 56778888888888888887765 567888888888888763
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=4.4e-07 Score=70.96 Aligned_cols=58 Identities=31% Similarity=0.490 Sum_probs=26.2
Q ss_pred cCcEEEeecCCCcccCc-cccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcc
Q 004707 277 HLKHIYLQRTAITELPS-SFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSA 334 (734)
Q Consensus 277 ~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~ 334 (734)
+|++|++++|+++.+|. .|.++++|++|++++|.+...-|..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444443 24444444444444444433333344444444444444443
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=1.4e-07 Score=104.31 Aligned_cols=197 Identities=24% Similarity=0.260 Sum_probs=144.4
Q ss_pred HHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcE
Q 004707 224 IRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLES 303 (734)
Q Consensus 224 i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~ 303 (734)
+..+..+..|++.+|...+ +...+..+++|++|++++|.+...- .+..++.|+.|++.+|.|+.++. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 5567788889999986544 3333678999999999998765542 36677889999999999998765 566999999
Q ss_pred eeecCCCCCCCCC-cccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCC--ccEEEeec
Q 004707 304 LSVRGCSKLDKLP-DNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSS--LECLHLRD 380 (734)
Q Consensus 304 L~Ls~~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~--L~~L~Ls~ 380 (734)
+++++|.+...-+ . ...+.+|+.+.+.+|.+..+.. +..+..+..+++..|. +..+.+ +..+.. |+.+++++
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-hHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhccc
Confidence 9999987655443 2 5788999999999999886532 2333344444555533 332222 223333 89999999
Q ss_pred CCCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCC
Q 004707 381 CAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 381 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l 430 (734)
|.+..++..+..+..+..|++..|.+..+. .+...+.+..+....+.+.
T Consensus 242 n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 242 NRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred Cccccccccccccccccccchhhccccccc-cccccchHHHhccCcchhc
Confidence 999988777888999999999999888654 3456667777777777654
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.4e-08 Score=99.14 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=27.2
Q ss_pred CcEEEecCCcCCC-cCchhhhCCCcCcEEEeecCCCc-ccCccccCCCCCcEeeecCCCC
Q 004707 254 LVDLFLHGCLNLE-RFPEILEKMEHLKHIYLQRTAIT-ELPSSFENLLGLESLSVRGCSK 311 (734)
Q Consensus 254 L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~Ls~~~~ 311 (734)
|+.|||+...+.. .+...+..+.+|+.|.|.++.+. .+...+.+-.+|+.|+|+.|+.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG 246 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG 246 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc
Confidence 5555555433322 12233444555555555555554 2333344445555555555543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=5.3e-08 Score=107.15 Aligned_cols=126 Identities=22% Similarity=0.189 Sum_probs=71.4
Q ss_pred cCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCC
Q 004707 277 HLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRC 356 (734)
Q Consensus 277 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~ 356 (734)
.|...+.++|.++.+..++.-++.|+.|||++|++...- .+..|+.|++|+++.|.+..+|..-..-.+|+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 355666666777666666666777777777776654432 466677777777777777766643222223566666553
Q ss_pred CCCCccCcccCCCCCCccEEEeecCCCCCCC--ccCCCCCCCcEEeeccCCCC
Q 004707 357 RNLVSLPPLLLSGLSSLECLHLRDCAVTDIP--QEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 357 ~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 407 (734)
.++++-. +.++.+|+.||+++|-+.+.. ..++.+..|+.|.|.||.+.
T Consensus 243 -~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 -ALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -HHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3333332 445566666666666554421 12334555556666666543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=3.3e-08 Score=108.66 Aligned_cols=124 Identities=25% Similarity=0.252 Sum_probs=67.0
Q ss_pred CcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeec
Q 004707 301 LESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRD 380 (734)
Q Consensus 301 L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~ 380 (734)
|.+.+.++| .+..+..++.-++.|+.|+|++|+++.+. .+..+++|++|+|++| .+..+|.....++. |+.|.+++
T Consensus 166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred Hhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecc
Confidence 444444443 23344445555666666666666666554 5566666666666663 34444442222333 66666666
Q ss_pred CCCCCCCccCCCCCCCcEEeeccCCCCccc--ccccCCCCCcEEeeecCCC
Q 004707 381 CAVTDIPQEIGCLSSLEELDLSGNSFESLP--VSIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 381 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~~ 429 (734)
|.++++ ..+.++.+|+.||++.|-+.... .-+..+..|+.|+|.+|++
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 666554 23455666666666666554221 1234555666666666654
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.7e-07 Score=93.25 Aligned_cols=175 Identities=19% Similarity=0.186 Sum_probs=104.8
Q ss_pred hcCeeecCCccccc-cccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecC-CCcccC--ccccCCCCCcEe
Q 004707 229 KHNKLDLRDCRRLK-RISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRT-AITELP--SSFENLLGLESL 304 (734)
Q Consensus 229 ~l~~L~L~~~~~~~-~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n-~l~~lp--~~i~~l~~L~~L 304 (734)
+++.|||++..... .+...++.+.+|+.|.|.|+.....+-..+..-.+|+.|+|+.+ .+++-. --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47889998865432 33445778999999999999888888788888899999999985 676432 236789999999
Q ss_pred eecCCCCCCCCCcc-cCC-CCccceeeccCcccc----cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEe
Q 004707 305 SVRGCSKLDKLPDN-IGN-LESLAYILADGSAIS----QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHL 378 (734)
Q Consensus 305 ~Ls~~~~~~~lp~~-l~~-l~~L~~L~l~~n~l~----~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~L 378 (734)
+|++|......-.. +.+ -++|+.|+++|+.-. .+..-.. .+++|..|||
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~-------------------------rcp~l~~LDL 320 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR-------------------------RCPNLVHLDL 320 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH-------------------------hCCceeeecc
Confidence 99998765432111 111 135555666554211 1111223 4455555555
Q ss_pred ecCCCC-C-CCccCCCCCCCcEEeeccCCCC--cccccccCCCCCcEEeeecCC
Q 004707 379 RDCAVT-D-IPQEIGCLSSLEELDLSGNSFE--SLPVSIKQLSQLSSLDLSDCN 428 (734)
Q Consensus 379 s~n~l~-~-lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~ 428 (734)
++|... . .-..+..++.|++|.++.|..- +.--.+...|+|.+|++.+|-
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 554322 1 2223444555666666555321 111134556667777766654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=9.1e-06 Score=58.52 Aligned_cols=39 Identities=38% Similarity=0.634 Sum_probs=24.3
Q ss_pred CccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCccc
Q 004707 372 SLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLP 410 (734)
Q Consensus 372 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 410 (734)
+|++|++++|+++++|..++.+++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666665666666666666666666554
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=5.3e-06 Score=82.81 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=46.3
Q ss_pred CCCcCcEEEeecCCCc---ccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccc--cCCccccCCCCC
Q 004707 274 KMEHLKHIYLQRTAIT---ELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAIS--QLPSSVADSNVL 348 (734)
Q Consensus 274 ~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~--~lp~~i~~l~~L 348 (734)
..+.+++|||.+|.|+ ++-.-+.+||.|++|+|+.|++...+-.--..+.+|+.|.|.++.+. ...+.+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4456666666666665 33333556666666666665543322211123456666666666554 445555566666
Q ss_pred cEEEcCCC
Q 004707 349 RYLWFPRC 356 (734)
Q Consensus 349 ~~L~l~~~ 356 (734)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 66666654
No 52
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.90 E-value=0.00014 Score=89.13 Aligned_cols=193 Identities=17% Similarity=0.237 Sum_probs=123.3
Q ss_pred EEEEEEeCCCChH------HHHhHhccCCCCCCCcEEEEEcCChhHHh--hcC-CCceEECC----CCCHHHHHHHHHHh
Q 004707 2 KVLIVLDDVNKDE------QLEGLIGGLDQYGPGSRIVVTTRDKGVLE--NFG-VEKIYRVN----GLEFYEAFELFYYF 68 (734)
Q Consensus 2 k~LiVLDDV~~~~------~~~~l~~~~~~~~~GSrIivTTR~~~v~~--~~~-~~~~y~v~----~L~~~~s~~Lf~~~ 68 (734)
+++|||||+.... .+..+.. ...++-++|||||...-+. ... .+...++. +++.+|+.++|...
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~---~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~ 198 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLR---HQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR 198 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHH---hCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc
Confidence 5899999996642 3444443 3346778989999842111 111 13355666 89999999999754
Q ss_pred hcCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhcCCccc-HHHHHHHhhhhcCCCchhHHHHHHh-hcccCChhhhhh
Q 004707 69 AFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLKRKSH-WGNVLDDLNRICESDIHDIHDILKI-SFNELMPKMKSI 146 (734)
Q Consensus 69 af~~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~~~~~-W~~~l~~l~~~~~~~i~~i~~~L~~-Syd~L~~~~k~~ 146 (734)
.-. ..+ .+...++.+.++|.|+++..++..+..... -......+.......+ .+.+.- -++.||+..+..
T Consensus 199 ~~~--~~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~l~~~~~~~ 270 (903)
T PRK04841 199 LSS--PIE---AAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHL---SDYLVEEVLDNVDLETRHF 270 (903)
T ss_pred cCC--CCC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhH---HHHHHHHHHhcCCHHHHHH
Confidence 421 122 234568999999999999998877762221 1111222211112223 554433 488999999999
Q ss_pred hhhhcccccCCChhHHHHHHHhh-ccchhHHHhhcCCceee-C---CeEEecHHHHHHHHHHHhc
Q 004707 147 FLDIACFFEGEDKDFVTRILDDY-GSYGLEVLIDKSLITVS-H---NCLRMHDLLQEMGREIVRQ 206 (734)
Q Consensus 147 fl~ia~f~~~~~~~~~~~~l~~~-~~~~i~~L~~ksli~~~-~---~~~~mHdll~~~~~~i~~~ 206 (734)
++..|++. .++.+....+.... ....+..|.+.+++... + ..+++|+++++..+.-...
T Consensus 271 l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 271 LLRCSVLR-SMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred HHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 99999986 55555555444322 26678889999986532 2 3799999999998776533
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=4.3e-06 Score=82.44 Aligned_cols=181 Identities=19% Similarity=0.257 Sum_probs=101.8
Q ss_pred cCCCCCcEEEecCCcCCCc----CchhhhCCCcCcEEEeecCCC---c-ccCc-------cccCCCCCcEeeecCCCCCC
Q 004707 249 CKLKSLVDLFLHGCLNLER----FPEILEKMEHLKHIYLQRTAI---T-ELPS-------SFENLLGLESLSVRGCSKLD 313 (734)
Q Consensus 249 ~~l~~L~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~n~l---~-~lp~-------~i~~l~~L~~L~Ls~~~~~~ 313 (734)
..+..+..++||||.+... +...+.+-.+|+..+++.-.. . ++|+ .+-++++|+..+||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3466667777777665443 233444556666666664211 1 3332 24567778888888877666
Q ss_pred CCCcc----cCCCCccceeeccCcccccCCc--------------cccCCCCCcEEEcCCCCCCCccCc----ccCCCCC
Q 004707 314 KLPDN----IGNLESLAYILADGSAISQLPS--------------SVADSNVLRYLWFPRCRNLVSLPP----LLLSGLS 371 (734)
Q Consensus 314 ~lp~~----l~~l~~L~~L~l~~n~l~~lp~--------------~i~~l~~L~~L~l~~~~~l~~l~~----~~l~~l~ 371 (734)
..|+. +++-+.|.+|.+++|.+..+.. -..+-|.|+......|+ +...+. ..+..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhc
Confidence 66543 4566778888888877764321 12334566666665543 222111 1122234
Q ss_pred CccEEEeecCCCCC--C----CccCCCCCCCcEEeeccCCCCc-----ccccccCCCCCcEEeeecCCCC
Q 004707 372 SLECLHLRDCAVTD--I----PQEIGCLSSLEELDLSGNSFES-----LPVSIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 372 ~L~~L~Ls~n~l~~--l----p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~~l 430 (734)
.|+++.+..|.|.. + -..+..+.+|+.|+|..|.++. +...+..++.|+.|.+.+|-+.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 67777777777652 1 1123456677777777777762 2223455666777777777554
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=1.3e-05 Score=80.06 Aligned_cols=186 Identities=18% Similarity=0.216 Sum_probs=114.6
Q ss_pred CCCCCcEEEecCCcCCC--cCchhhhCCCcCcEEEeecCCCcccCccc-cCCCCCcEeeecCCCCCC-CCCcccCCCCcc
Q 004707 250 KLKSLVDLFLHGCLNLE--RFPEILEKMEHLKHIYLQRTAITELPSSF-ENLLGLESLSVRGCSKLD-KLPDNIGNLESL 325 (734)
Q Consensus 250 ~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~Ls~~~~~~-~lp~~l~~l~~L 325 (734)
..+.++.|||.+|.+.. .+...+.+|+.|+.|+|+.|.+..--... ..+.+|++|-|.|..+.- .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 56778888888876543 34556678888888888888765211111 345678888887744321 233446677788
Q ss_pred ceeeccCcccccCC---ccccCC-CCCcEEEcCCCCCCCccCc-ccCCCCCCccEEEeecCCCCCCC--ccCCCCCCCcE
Q 004707 326 AYILADGSAISQLP---SSVADS-NVLRYLWFPRCRNLVSLPP-LLLSGLSSLECLHLRDCAVTDIP--QEIGCLSSLEE 398 (734)
Q Consensus 326 ~~L~l~~n~l~~lp---~~i~~l-~~L~~L~l~~~~~l~~l~~-~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~ 398 (734)
++|.++.|++..+- .-+... +.++.|++..|........ ....-++++..+-+..|.+.+.. .....++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 88888877555321 111111 2444455444421110000 00123567788888888877532 33556778888
Q ss_pred EeeccCCCCccc--ccccCCCCCcEEeeecCCCCCCCCC
Q 004707 399 LDLSGNSFESLP--VSIKQLSQLSSLDLSDCNMLRSLPE 435 (734)
Q Consensus 399 L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~~l~~lp~ 435 (734)
|+|+.|++.+.. ..+.+++.|..|.++++++...+..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 999999887543 2577889999999999998776553
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=1.6e-06 Score=76.88 Aligned_cols=103 Identities=17% Similarity=0.318 Sum_probs=69.4
Q ss_pred eeeccCcccccCCccc---cCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeecc
Q 004707 327 YILADGSAISQLPSSV---ADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSG 403 (734)
Q Consensus 327 ~L~l~~n~l~~lp~~i---~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 403 (734)
.++|+.+.+..++... .....|...++++ +.+.++|+..-..++.++.|+|++|.++++|..+..++.|+.|+++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 3444444444343332 2233444445555 34555555544556678888888888888888888888888888888
Q ss_pred CCCCcccccccCCCCCcEEeeecCCCC
Q 004707 404 NSFESLPVSIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 404 n~l~~lp~~l~~l~~L~~L~L~~n~~l 430 (734)
|.+...|.-+..+.+|-.|+..+|...
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCccc
Confidence 888888887777888888888777643
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.63 E-value=3e-06 Score=88.39 Aligned_cols=202 Identities=21% Similarity=0.311 Sum_probs=107.1
Q ss_pred CCCCCcEEEecCCcCCCc--CchhhhCCCcCcEEEeecC-CCc--ccCccccCCCCCcEeeecCCCCCCC--CCcccCCC
Q 004707 250 KLKSLVDLFLHGCLNLER--FPEILEKMEHLKHIYLQRT-AIT--ELPSSFENLLGLESLSVRGCSKLDK--LPDNIGNL 322 (734)
Q Consensus 250 ~l~~L~~L~L~~~~~~~~--~p~~~~~l~~L~~L~L~~n-~l~--~lp~~i~~l~~L~~L~Ls~~~~~~~--lp~~l~~l 322 (734)
.+++|+.|+|..|..+.. +......+++|++|+++.+ .++ .+..-..++.+|+.+.+.||.-.+. +-..-+.+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 455555555555543332 1122334555555555554 222 1222233444455555555432211 00001122
Q ss_pred CccceeeccCcc-ccc--CCccccCCCCCcEEEcCCCCCCCccCcccC-CCCCCccEEEeecCC-CCC--CCccCCCCCC
Q 004707 323 ESLAYILADGSA-ISQ--LPSSVADSNVLRYLWFPRCRNLVSLPPLLL-SGLSSLECLHLRDCA-VTD--IPQEIGCLSS 395 (734)
Q Consensus 323 ~~L~~L~l~~n~-l~~--lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l-~~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~ 395 (734)
..+..+++..+. ++. +-..-..+..|+.|..++|..++..+-..+ .+..+|+.|.+++|+ +++ +..--.+.+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 233334433332 221 111123467788888888887666543333 367888999988886 333 2222345778
Q ss_pred CcEEeeccCCCC---cccccccCCCCCcEEeeecCCCCCCC--------CCCCCCCceEEecCCCCC
Q 004707 396 LEELDLSGNSFE---SLPVSIKQLSQLSSLDLSDCNMLRSL--------PELPSCLGFLNLSGCNML 451 (734)
Q Consensus 396 L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~~l~~l--------p~~~~~L~~L~Ls~n~~l 451 (734)
|+.+++..+... ++-.--.+++.|+.|.|++|.....- ......|+.+.|++|+.+
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 888888888554 23333357888999999988765422 123456788888888754
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=7.3e-05 Score=53.81 Aligned_cols=37 Identities=41% Similarity=0.627 Sum_probs=32.6
Q ss_pred CCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCC
Q 004707 394 SSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 394 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l 430 (734)
++|++|++++|+|+.+|+.++++++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999999865
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.44 E-value=4.9e-06 Score=73.91 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=59.7
Q ss_pred cCcEEEeecCCCcccCcc---ccCCCCCcEeeecCCCCCCCCCcccCC-CCccceeeccCcccccCCccccCCCCCcEEE
Q 004707 277 HLKHIYLQRTAITELPSS---FENLLGLESLSVRGCSKLDKLPDNIGN-LESLAYILADGSAISQLPSSVADSNVLRYLW 352 (734)
Q Consensus 277 ~L~~L~L~~n~l~~lp~~---i~~l~~L~~L~Ls~~~~~~~lp~~l~~-l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~ 352 (734)
.+..++|+.+.+-.++.. +.....|...+|++|. ...+|..|.. .+.++.|++.+|.++.+|..
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE----------- 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEE----------- 95 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHH-----------
Confidence 345566666665544433 3344455555666643 3344443332 23555555555555555554
Q ss_pred cCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCccccc
Q 004707 353 FPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPVS 412 (734)
Q Consensus 353 l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 412 (734)
+..++.|+.|+++.|.+...|..+..+.+|-.|+..+|.+..+|..
T Consensus 96 --------------~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 96 --------------LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred --------------HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 4455555555666666655555555566666666666666655544
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=6.4e-05 Score=87.25 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=55.8
Q ss_pred hcCeeecCCccccccc-ccc-ccCCCCCcEEEecCCcCC-CcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEee
Q 004707 229 KHNKLDLRDCRRLKRI-STR-FCKLKSLVDLFLHGCLNL-ERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLS 305 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~-p~~-~~~l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 305 (734)
+|+.||+++......- |.. -..+|+|+.|.+.|-.+. ..+-....++++|..||+++++++.+ .++++|++|++|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 4666777664333211 111 235677777777664332 22334455677777777777777766 5567777777776
Q ss_pred ecCCCCCC-CCCcccCCCCccceeeccCcc
Q 004707 306 VRGCSKLD-KLPDNIGNLESLAYILADGSA 334 (734)
Q Consensus 306 Ls~~~~~~-~lp~~l~~l~~L~~L~l~~n~ 334 (734)
+.+=.+.. .--..+.+|++|+.||++...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 65522211 000123445555555555443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00012 Score=85.10 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=48.1
Q ss_pred CCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCccc--ccccCCCCCcEEeeecCCCCCCC---------CCC
Q 004707 368 SGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLP--VSIKQLSQLSSLDLSDCNMLRSL---------PEL 436 (734)
Q Consensus 368 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~~l~~l---------p~~ 436 (734)
.++++|..||+|+++++.+ ..++.+++|+.|.+.+-.+.+-. ..+.+|++|+.||+|.-+..... ...
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 4566666666666666665 45666666666666665555322 23456667777777665443211 123
Q ss_pred CCCCceEEecCCCCC
Q 004707 437 PSCLGFLNLSGCNML 451 (734)
Q Consensus 437 ~~~L~~L~Ls~n~~l 451 (734)
.+.|+.||.|+..+.
T Consensus 249 LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 249 LPELRFLDCSGTDIN 263 (699)
T ss_pred CccccEEecCCcchh
Confidence 456777777766443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.28 E-value=0.0004 Score=66.18 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=31.8
Q ss_pred CCCccEEEeecCCCCCCC--ccCCCCCCCcEEeeccCCCCcccc----cccCCCCCcEEeeecC
Q 004707 370 LSSLECLHLRDCAVTDIP--QEIGCLSSLEELDLSGNSFESLPV----SIKQLSQLSSLDLSDC 427 (734)
Q Consensus 370 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~n 427 (734)
+++|..|.|.+|++.++. ..+..++.|++|.+-+|.++.-+. -+..+|+|+.||..+=
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 445555555555555432 224455666666666666653322 2456677777776653
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.15 E-value=0.00019 Score=71.07 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=52.0
Q ss_pred hhhCCCcCcEEEeecCCCc-----ccCccccCCCCCcEeeecCCCCCCCC----Cc-------ccCCCCccceeeccCcc
Q 004707 271 ILEKMEHLKHIYLQRTAIT-----ELPSSFENLLGLESLSVRGCSKLDKL----PD-------NIGNLESLAYILADGSA 334 (734)
Q Consensus 271 ~~~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~Ls~~~~~~~l----p~-------~l~~l~~L~~L~l~~n~ 334 (734)
.+.-+..++.++|++|.|. .+...|.+-.+|+..+++. -+++.. |+ .+.+|+.|+..+|+.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3445778899999999886 3455577778888888876 444433 22 24456666666666666
Q ss_pred cc-cCCc----cccCCCCCcEEEcCCC
Q 004707 335 IS-QLPS----SVADSNVLRYLWFPRC 356 (734)
Q Consensus 335 l~-~lp~----~i~~l~~L~~L~l~~~ 356 (734)
+. +.|. .+++.+.|++|.+++|
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecC
Confidence 55 2232 2344455555555443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.79 E-value=0.0019 Score=61.62 Aligned_cols=63 Identities=27% Similarity=0.351 Sum_probs=32.5
Q ss_pred CCCCCCccEEEeecCCCCCCCccCC-CCCCCcEEeeccCCCCcccc--cccCCCCCcEEeeecCCC
Q 004707 367 LSGLSSLECLHLRDCAVTDIPQEIG-CLSSLEELDLSGNSFESLPV--SIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 367 l~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~~ 429 (734)
+..++.|.+|.|.+|.|+.+...+. .+++|..|.|.+|++.++.. .+..+++|++|.+-+|+.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 3345555555565555555433332 23455666666665554322 234555566666555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.00096 Score=66.28 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=18.4
Q ss_pred CCCCCcEeeecCC--CCCCCCCcccCCCCccceeeccCccc
Q 004707 297 NLLGLESLSVRGC--SKLDKLPDNIGNLESLAYILADGSAI 335 (734)
Q Consensus 297 ~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~L~l~~n~l 335 (734)
.|++|++|.++.| ...+.++....++++|++|++++|.+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 4556666666665 33333333333344444444444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.21 E-value=0.013 Score=53.10 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=45.1
Q ss_pred cccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeeecCCCCCCCCCcccCCCCcc
Q 004707 247 RFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSVRGCSKLDKLPDNIGNLESL 325 (734)
Q Consensus 247 ~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L 325 (734)
.|.++++|+.+.+.. .....-...+.++++|+.+.+..+ +..++.. +.++++|+.+.+.+ .....-...+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466667777777764 222222344666667777777664 6555543 56666677777754 2221122335556666
Q ss_pred ceeeccCcccccCCccccCCCCCcEEEcC
Q 004707 326 AYILADGSAISQLPSSVADSNVLRYLWFP 354 (734)
Q Consensus 326 ~~L~l~~n~l~~lp~~i~~l~~L~~L~l~ 354 (734)
+.+.+..+ +..++.....-.+|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNCNLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT-T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCCCceEEEEC
Confidence 66666543 44443332222255555443
No 66
>PRK06893 DNA replication initiation factor; Validated
Probab=96.10 E-value=0.013 Score=59.18 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=57.8
Q ss_pred EEEEeCCCCh---HHHHh-HhccCCC-CCCCcEEEEEcCC----------hhHHhhcCCCceEECCCCCHHHHHHHHHHh
Q 004707 4 LIVLDDVNKD---EQLEG-LIGGLDQ-YGPGSRIVVTTRD----------KGVLENFGVEKIYRVNGLEFYEAFELFYYF 68 (734)
Q Consensus 4 LiVLDDV~~~---~~~~~-l~~~~~~-~~~GSrIivTTR~----------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~ 68 (734)
+|||||+|.. .+|+. +...+.. ...|++|||||.+ +.+...++...+++++++++++.++++.++
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 7999999873 45653 2222222 1346677665544 467777776789999999999999999999
Q ss_pred hcCCC-CCchhHHHHHHHHHHHhCCCch
Q 004707 69 AFKEN-HCPEDFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 69 af~~~-~~~~~~~~l~~~i~~~c~GlPL 95 (734)
|+... ..++ +...-+++++.|-.-
T Consensus 174 a~~~~l~l~~---~v~~~L~~~~~~d~r 198 (229)
T PRK06893 174 AYQRGIELSD---EVANFLLKRLDRDMH 198 (229)
T ss_pred HHHcCCCCCH---HHHHHHHHhccCCHH
Confidence 98543 2222 334455566655443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.0038 Score=62.17 Aligned_cols=61 Identities=34% Similarity=0.498 Sum_probs=29.9
Q ss_pred CCCccEEEeecCC--CC-CCCccCCCCCCCcEEeeccCCCCc---ccccccCCCCCcEEeeecCCCCC
Q 004707 370 LSSLECLHLRDCA--VT-DIPQEIGCLSSLEELDLSGNSFES---LPVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 370 l~~L~~L~Ls~n~--l~-~lp~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~n~~l~ 431 (734)
+++|+.|.++.|. ++ +++.....+++|++|++++|++.- ++ .+..+.+|..|++.+|.-.+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc
Confidence 4455555555552 22 132223334556666666665542 21 33455566666666665444
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.97 E-value=0.0013 Score=69.29 Aligned_cols=224 Identities=18% Similarity=0.227 Sum_probs=116.8
Q ss_pred HhhcCeeecCCcccccccc--ccccCCCCCcEEEecCCcCCCc--CchhhhCCCcCcEEEeecCCCc---ccCccccCCC
Q 004707 227 VLKHNKLDLRDCRRLKRIS--TRFCKLKSLVDLFLHGCLNLER--FPEILEKMEHLKHIYLQRTAIT---ELPSSFENLL 299 (734)
Q Consensus 227 l~~l~~L~L~~~~~~~~~p--~~~~~l~~L~~L~L~~~~~~~~--~p~~~~~l~~L~~L~L~~n~l~---~lp~~i~~l~ 299 (734)
..+++.++|..|..++... .....+++|++|+++.|..... +.....++..++.+.+.++.=. .+-..-+...
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 3456666776665544221 1233667777777777754332 2333445555666655554211 1111112334
Q ss_pred CCcEeeecCCCCCCCCC--cccCCCCccceeeccCccc-c--cCCccccCCCCCcEEEcCCCCCCCccCcccC-CCCCCc
Q 004707 300 GLESLSVRGCSKLDKLP--DNIGNLESLAYILADGSAI-S--QLPSSVADSNVLRYLWFPRCRNLVSLPPLLL-SGLSSL 373 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp--~~l~~l~~L~~L~l~~n~l-~--~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l-~~l~~L 373 (734)
.+..+++.+|..+.... ..-..+..|+.|..+++.- + .+-.-..+..+|+.|-+++|..++..-...+ .+++.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 45555655664433221 1122455666666655432 2 1111223457777777777776554332212 356778
Q ss_pred cEEEeecCCCCC---CCccCCCCCCCcEEeeccCCC-Cc-----ccccccCCCCCcEEeeecCCCCCCCC----CCCCCC
Q 004707 374 ECLHLRDCAVTD---IPQEIGCLSSLEELDLSGNSF-ES-----LPVSIKQLSQLSSLDLSDCNMLRSLP----ELPSCL 440 (734)
Q Consensus 374 ~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n~l-~~-----lp~~l~~l~~L~~L~L~~n~~l~~lp----~~~~~L 440 (734)
+.+++..|.... +-..-.+++.|+.|.++++.. +. +..+-..+..|..|.|++|+.+..-- ..-.+|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 888887776442 323334577788888887743 21 22333456677888888877643111 122466
Q ss_pred ceEEecCCCC
Q 004707 441 GFLNLSGCNM 450 (734)
Q Consensus 441 ~~L~Ls~n~~ 450 (734)
+.+++-+|..
T Consensus 429 eri~l~~~q~ 438 (483)
T KOG4341|consen 429 ERIELIDCQD 438 (483)
T ss_pred ceeeeechhh
Confidence 7777776654
No 69
>PF05729 NACHT: NACHT domain
Probab=95.89 E-value=0.015 Score=55.08 Aligned_cols=68 Identities=21% Similarity=0.380 Sum_probs=47.8
Q ss_pred CEEEEEEeCCCChHH---------HHhHh-ccCCC-CCCCcEEEEEcCChhH---HhhcCCCceEECCCCCHHHHHHHHH
Q 004707 1 MKVLIVLDDVNKDEQ---------LEGLI-GGLDQ-YGPGSRIVVTTRDKGV---LENFGVEKIYRVNGLEFYEAFELFY 66 (734)
Q Consensus 1 kk~LiVLDDV~~~~~---------~~~l~-~~~~~-~~~GSrIivTTR~~~v---~~~~~~~~~y~v~~L~~~~s~~Lf~ 66 (734)
++++||||++|+... +..+. .-.+. .-++.+||||+|.... .+.......++|+++++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 579999999987643 12222 22221 3568999999999777 3333444689999999999999886
Q ss_pred Hh
Q 004707 67 YF 68 (734)
Q Consensus 67 ~~ 68 (734)
++
T Consensus 161 ~~ 162 (166)
T PF05729_consen 161 KY 162 (166)
T ss_pred HH
Confidence 54
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.55 E-value=0.033 Score=50.33 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=11.8
Q ss_pred hhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeeecC
Q 004707 272 LEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSVRG 308 (734)
Q Consensus 272 ~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls~ 308 (734)
+.++.+|+.+.+.. .++.++.. |.++++|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 33444455554442 33334332 44444444444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.40 E-value=0.0014 Score=74.02 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=51.4
Q ss_pred CCCCcEEEecCCcCCCc--CchhhhCCCcCcEEEeecC--CCcc----cCccccCCCCCcEeeecCCCCCCCC-CcccC-
Q 004707 251 LKSLVDLFLHGCLNLER--FPEILEKMEHLKHIYLQRT--AITE----LPSSFENLLGLESLSVRGCSKLDKL-PDNIG- 320 (734)
Q Consensus 251 l~~L~~L~L~~~~~~~~--~p~~~~~l~~L~~L~L~~n--~l~~----lp~~i~~l~~L~~L~Ls~~~~~~~l-p~~l~- 320 (734)
++.|+.|.+.+|..... +-.....+++|+.|+++++ .+.. .......+++|+.|++++|...... -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555544443 2234445555555555542 1111 1112234456666666665532211 11111
Q ss_pred CCCccceeeccCcc-cc--cCCccccCCCCCcEEEcCCCCCC
Q 004707 321 NLESLAYILADGSA-IS--QLPSSVADSNVLRYLWFPRCRNL 359 (734)
Q Consensus 321 ~l~~L~~L~l~~n~-l~--~lp~~i~~l~~L~~L~l~~~~~l 359 (734)
.+++|+.|.+.++. ++ .+-.....++.|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 25566666655444 33 23333445666777777776655
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.0015 Score=65.12 Aligned_cols=98 Identities=23% Similarity=0.214 Sum_probs=68.5
Q ss_pred HhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc--ccCCCCCcEe
Q 004707 227 VLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS--FENLLGLESL 304 (734)
Q Consensus 227 l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~--i~~l~~L~~L 304 (734)
+.+.++|+.-+|... .+.- ..+|+.|++|.|+-|.+..-- .+..+++|++|+|..|.|..+..- +.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~-DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCcc-HHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 444556777777543 2322 458999999999988765443 367889999999999988876543 6788999999
Q ss_pred eecCCCCCCCCCcc-----cCCCCcccee
Q 004707 305 SVRGCSKLDKLPDN-----IGNLESLAYI 328 (734)
Q Consensus 305 ~Ls~~~~~~~lp~~-----l~~l~~L~~L 328 (734)
.|..|...+.-+.. +.-|++|+.|
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhc
Confidence 99888777665542 3344555544
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.0012 Score=65.93 Aligned_cols=67 Identities=25% Similarity=0.264 Sum_probs=45.3
Q ss_pred CCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcccc--cccCCCCCcEEeeecCCCCCCCC
Q 004707 367 LSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPV--SIKQLSQLSSLDLSDCNMLRSLP 434 (734)
Q Consensus 367 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~~l~~lp 434 (734)
...++.|+.|.|+-|+|+.+. .+..+++|++|.|..|.|.++-+ -+.++++|+.|.|..|+-.+.-+
T Consensus 37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 346777777777777777652 35567777777777777775543 35677777777777777655433
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.06 E-value=0.01 Score=35.55 Aligned_cols=21 Identities=52% Similarity=0.786 Sum_probs=13.1
Q ss_pred CCcEEeeccCCCCcccccccC
Q 004707 395 SLEELDLSGNSFESLPVSIKQ 415 (734)
Q Consensus 395 ~L~~L~Ls~n~l~~lp~~l~~ 415 (734)
+|++|+|++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.92 E-value=0.0044 Score=69.93 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=52.6
Q ss_pred hhcCeeecCCcccccc--ccccccCCCCCcEEEecCC-cCCCcCc----hhhhCCCcCcEEEeecCC-Cccc--CccccC
Q 004707 228 LKHNKLDLRDCRRLKR--ISTRFCKLKSLVDLFLHGC-LNLERFP----EILEKMEHLKHIYLQRTA-ITEL--PSSFEN 297 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~--~p~~~~~l~~L~~L~L~~~-~~~~~~p----~~~~~l~~L~~L~L~~n~-l~~l--p~~i~~ 297 (734)
..++.|.+.+|..... +-.....+++|+.|++++| ......+ .....+++|+.|+++++. ++.. ..-...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 3445555555554443 2233456666677766652 2211111 233445666666666655 4321 111123
Q ss_pred CCCCcEeeecCCCCCC--CCCcccCCCCccceeeccCccc
Q 004707 298 LLGLESLSVRGCSKLD--KLPDNIGNLESLAYILADGSAI 335 (734)
Q Consensus 298 l~~L~~L~Ls~~~~~~--~lp~~l~~l~~L~~L~l~~n~l 335 (734)
+++|++|.+.+|..+. .+-.....+++|++|+++++..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5667777666665311 1112234456677776665543
No 76
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.70 E-value=0.093 Score=56.16 Aligned_cols=152 Identities=16% Similarity=0.039 Sum_probs=87.7
Q ss_pred CcEEEEEcCChhHHhhc--CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhcCC
Q 004707 29 GSRIVVTTRDKGVLENF--GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLKR 106 (734)
Q Consensus 29 GSrIivTTR~~~v~~~~--~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~~ 106 (734)
.+-|..|||...+.... ....++++++++.++..+++.+.+-.....- -.+....|+++|+|.|-.+..+...
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~--- 225 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRR--- 225 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHH---
Confidence 44566677755443321 1235789999999999999998875432211 2345778999999999544333332
Q ss_pred cccHHHHHHHhhhhcCCCchhHHHHHHhhcccCChhhhhhhh-hhcccccC-CChhHHHHHHHhhc---cchhH-HHhhc
Q 004707 107 KSHWGNVLDDLNRICESDIHDIHDILKISFNELMPKMKSIFL-DIACFFEG-EDKDFVTRILDDYG---SYGLE-VLIDK 180 (734)
Q Consensus 107 ~~~W~~~l~~l~~~~~~~i~~i~~~L~~Syd~L~~~~k~~fl-~ia~f~~~-~~~~~~~~~l~~~~---~~~i~-~L~~k 180 (734)
...|..... -.......+....+.+...|.+|+..++..+. .+..|..+ ...+.+...+..-. +..++ .|+++
T Consensus 226 ~~~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 226 VRDFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQ 304 (328)
T ss_pred HHHHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHc
Confidence 222221110 00111111223355667788999998888876 44555443 34455555543221 33445 78999
Q ss_pred CCceee
Q 004707 181 SLITVS 186 (734)
Q Consensus 181 sli~~~ 186 (734)
+||...
T Consensus 305 ~li~~~ 310 (328)
T PRK00080 305 GFIQRT 310 (328)
T ss_pred CCcccC
Confidence 998644
No 77
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.49 E-value=0.23 Score=52.44 Aligned_cols=151 Identities=15% Similarity=0.012 Sum_probs=86.6
Q ss_pred CcEEEEEcCChhHHhhc--CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhcCC
Q 004707 29 GSRIVVTTRDKGVLENF--GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLKR 106 (734)
Q Consensus 29 GSrIivTTR~~~v~~~~--~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~~ 106 (734)
..-|.+|||...+.... ....++++++++.+|..+++.+.+-..... --.+....+++.|+|.|-.+..++..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~-- 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV-- 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH--
Confidence 45566677765443321 124578999999999999999887532211 113456789999999996554444321
Q ss_pred cccHHHHHH-HhhhhcCCCchhHHHHHHhhcccCChhhhhhhh-hhcccccC-CChhHHHHHHHhhc---cchhH-HHhh
Q 004707 107 KSHWGNVLD-DLNRICESDIHDIHDILKISFNELMPKMKSIFL-DIACFFEG-EDKDFVTRILDDYG---SYGLE-VLID 179 (734)
Q Consensus 107 ~~~W~~~l~-~l~~~~~~~i~~i~~~L~~Syd~L~~~~k~~fl-~ia~f~~~-~~~~~~~~~l~~~~---~~~i~-~L~~ 179 (734)
|..+.. .-.......+....+.+..+|.+|+..++..+. .++.+..+ ...+.+...+.... ...++ .|++
T Consensus 206 ---~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 206 ---RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQ 282 (305)
T ss_pred ---HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHH
Confidence 221110 000011111122344467788999998887766 44555332 34455554443222 44456 6999
Q ss_pred cCCceee
Q 004707 180 KSLITVS 186 (734)
Q Consensus 180 ksli~~~ 186 (734)
++||...
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999644
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.43 E-value=0.014 Score=34.98 Aligned_cols=18 Identities=39% Similarity=0.624 Sum_probs=8.7
Q ss_pred CcEEEeecCCCcccCccc
Q 004707 278 LKHIYLQRTAITELPSSF 295 (734)
Q Consensus 278 L~~L~L~~n~l~~lp~~i 295 (734)
|++|+|++|.++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555554444443
No 79
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.02 E-value=0.19 Score=50.39 Aligned_cols=97 Identities=24% Similarity=0.232 Sum_probs=51.4
Q ss_pred CEEEEEEeCCCChH-----------HHHhHhccCCCCCCCcEEEEEcCChhHHhh--------cCCCceEECCCCCHHHH
Q 004707 1 MKVLIVLDDVNKDE-----------QLEGLIGGLDQYGPGSRIVVTTRDKGVLEN--------FGVEKIYRVNGLEFYEA 61 (734)
Q Consensus 1 kk~LiVLDDV~~~~-----------~~~~l~~~~~~~~~GSrIivTTR~~~v~~~--------~~~~~~y~v~~L~~~~s 61 (734)
++++||+||+.... .+..+........+. .+|+++....+... .+....+.|++++.+++
T Consensus 118 ~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV-SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE-EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc-eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 35899999997766 122222222222333 45555555555544 22234599999999999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCchHHHH
Q 004707 62 FELFYYFAFKENHCPEDFKRDSRRVVKYADGNPLVLKV 99 (734)
Q Consensus 62 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~v 99 (734)
++++...+-..... +.-.+..++|...+||.|..|.-
T Consensus 197 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99998754222111 11234458999999999987753
No 80
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.68 E-value=0.6 Score=51.30 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=83.3
Q ss_pred EEEEEEeCCCChH------HHHhHhccCCCCCCCcE--EEEEcCChhHHhhcCC-------CceEECCCCCHHHHHHHHH
Q 004707 2 KVLIVLDDVNKDE------QLEGLIGGLDQYGPGSR--IVVTTRDKGVLENFGV-------EKIYRVNGLEFYEAFELFY 66 (734)
Q Consensus 2 k~LiVLDDV~~~~------~~~~l~~~~~~~~~GSr--IivTTR~~~v~~~~~~-------~~~y~v~~L~~~~s~~Lf~ 66 (734)
.++||||+++... .+..+...... .++++ ||.++++..+...... ...+.+++++.++..+++.
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 4789999998753 35555443322 23444 6777776654443211 2456899999999999988
Q ss_pred Hhh---cCCCCCch-hHHHHHHHHHHHhCCCchHHHHHHhhcC----------CcccHHHHHHHhhhhcCCCchhHHHHH
Q 004707 67 YFA---FKENHCPE-DFKRDSRRVVKYADGNPLVLKVLGSSLK----------RKSHWGNVLDDLNRICESDIHDIHDIL 132 (734)
Q Consensus 67 ~~a---f~~~~~~~-~~~~l~~~i~~~c~GlPLal~vlgs~L~----------~~~~W~~~l~~l~~~~~~~i~~i~~~L 132 (734)
.++ |......+ ....+++.+....|..+.|+.++-.... +.++.+.++++.. ....
T Consensus 218 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~----------~~~~ 287 (394)
T PRK00411 218 DRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE----------IVHL 287 (394)
T ss_pred HHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH----------HHHH
Confidence 765 43333333 3444444444445667888877754321 2334444444331 2334
Q ss_pred HhhcccCChhhhhhhhhhccc
Q 004707 133 KISFNELMPKMKSIFLDIACF 153 (734)
Q Consensus 133 ~~Syd~L~~~~k~~fl~ia~f 153 (734)
.-.+.+||.++|..+.-++..
T Consensus 288 ~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 288 SEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 456789999998877666543
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.22 E-value=0.061 Score=29.97 Aligned_cols=16 Identities=56% Similarity=0.829 Sum_probs=6.0
Q ss_pred CCcEEeeccCCCCccc
Q 004707 395 SLEELDLSGNSFESLP 410 (734)
Q Consensus 395 ~L~~L~Ls~n~l~~lp 410 (734)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
No 82
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.01 E-value=0.68 Score=47.80 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=64.2
Q ss_pred CEEEEEEeCCCChH--HHHhHhccCC---CCCCCcEEEEEcCChhHHhhc----------CCCceEECCCCCHHHHHHHH
Q 004707 1 MKVLIVLDDVNKDE--QLEGLIGGLD---QYGPGSRIVVTTRDKGVLENF----------GVEKIYRVNGLEFYEAFELF 65 (734)
Q Consensus 1 kk~LiVLDDV~~~~--~~~~l~~~~~---~~~~GSrIivTTR~~~v~~~~----------~~~~~y~v~~L~~~~s~~Lf 65 (734)
++++||+||++... .++.+..-.. ..+..-.|++|.... +.... .+...+++++++.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 46799999998854 4665543211 112222445555432 22111 12346889999999999988
Q ss_pred HHhhcCCC-C-CchhHHHHHHHHHHHhCCCchHHHHHHhhc
Q 004707 66 YYFAFKEN-H-CPEDFKRDSRRVVKYADGNPLVLKVLGSSL 104 (734)
Q Consensus 66 ~~~af~~~-~-~~~~~~~l~~~i~~~c~GlPLal~vlgs~L 104 (734)
...+-... . ...--.+..+.|++.++|.|..+..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 76653211 1 111123677899999999999999988775
No 83
>COG3899 Predicted ATPase [General function prediction only]
Probab=92.08 E-value=0.82 Score=55.17 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=103.2
Q ss_pred CEEEEEEeCC-CChHH----HHhHhccCCCCCC-CcE--EEEEcCCh-hHHhhcCC-CceEECCCCCHHHHHHHHHHhhc
Q 004707 1 MKVLIVLDDV-NKDEQ----LEGLIGGLDQYGP-GSR--IVVTTRDK-GVLENFGV-EKIYRVNGLEFYEAFELFYYFAF 70 (734)
Q Consensus 1 kk~LiVLDDV-~~~~~----~~~l~~~~~~~~~-GSr--IivTTR~~-~v~~~~~~-~~~y~v~~L~~~~s~~Lf~~~af 70 (734)
|++.||+||+ |-+.. ++.+.....-+.. -.. .+.|.+.. ......+. -..+.+++|+..+..++....--
T Consensus 154 ~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 154 HPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred CCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 4689999999 33322 4444433320000 111 23333333 22222222 36899999999999998865442
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhcC---------CcccHHHHHHHhhhhcCCCchhHHHHHHhhcccCCh
Q 004707 71 KENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK---------RKSHWGNVLDDLNRICESDIHDIHDILKISFNELMP 141 (734)
Q Consensus 71 ~~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~---------~~~~W~~~l~~l~~~~~~~i~~i~~~L~~Syd~L~~ 141 (734)
..... -.++...|+++.+|+|+-+.-+-..+. +...|+.-...+... ...+++-+.+..-.+.||.
T Consensus 234 ~~~~~---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~--~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 234 CTKLL---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL--ATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred Ccccc---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc--hhhHHHHHHHHHHHhcCCH
Confidence 21222 346677899999999998887777665 223454322222211 1122234568888999999
Q ss_pred hhhhhhhhhcccccCCChhHHHHHHHhhc
Q 004707 142 KMKSIFLDIACFFEGEDKDFVTRILDDYG 170 (734)
Q Consensus 142 ~~k~~fl~ia~f~~~~~~~~~~~~l~~~~ 170 (734)
..|++.-.-||+.+.++.+.+..+.++..
T Consensus 309 ~t~~Vl~~AA~iG~~F~l~~La~l~~~~~ 337 (849)
T COG3899 309 TTREVLKAAACIGNRFDLDTLAALAEDSP 337 (849)
T ss_pred HHHHHHHHHHHhCccCCHHHHHHHHhhch
Confidence 99999999999999999998888877654
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.99 E-value=0.0016 Score=72.49 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=8.8
Q ss_pred ccCCCCCcEEEecCCcC
Q 004707 248 FCKLKSLVDLFLHGCLN 264 (734)
Q Consensus 248 ~~~l~~L~~L~L~~~~~ 264 (734)
+....+|..|++++|.+
T Consensus 111 l~t~~~L~~L~l~~n~l 127 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNL 127 (478)
T ss_pred hcccccHhHhhcccCCC
Confidence 44455555555555543
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.95 E-value=0.14 Score=28.57 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=5.3
Q ss_pred cCcEEEeecCCCccc
Q 004707 277 HLKHIYLQRTAITEL 291 (734)
Q Consensus 277 ~L~~L~L~~n~l~~l 291 (734)
+|+.|+|++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 86
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.95 E-value=0.78 Score=45.96 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=56.1
Q ss_pred EEEEeCCCChH---H-HHhHhccCCC-CCCCcEEEEEcCCh---------hHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKDE---Q-LEGLIGGLDQ-YGPGSRIVVTTRDK---------GVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~~---~-~~~l~~~~~~-~~~GSrIivTTR~~---------~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
+||||||+... . .+.+...+.. ...+.+||+||+.. .+...+.....++++++++++-..++...+
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 78999997653 2 2334332221 12345899988742 223333334679999999999999887655
Q ss_pred cCCC-CCchhHHHHHHHHHHHhCCCchHHHHH
Q 004707 70 FKEN-HCPEDFKRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 70 f~~~-~~~~~~~~l~~~i~~~c~GlPLal~vl 100 (734)
-+.. ..+ .+..+.+++++.|.|..+..+
T Consensus 173 ~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 173 ARRGLQLP---DEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 3221 112 233455666788888755544
No 87
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.49 E-value=1.2 Score=47.31 Aligned_cols=93 Identities=15% Similarity=0.342 Sum_probs=61.8
Q ss_pred EEEEEEe-CCCChHHHHhHhccCCCCCCCcEEEEEcCChhHH-hhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 2 KVLIVLD-DVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVL-ENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 2 k~LiVLD-DV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~-~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
||+||=| |..+.+.++.|...+..--+++.+|++|.+.+.+ ... .-..++++++++.++..+..... +++. .
T Consensus 95 kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~-~~~~--~-- 169 (313)
T PRK05564 95 KVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYK-YNDI--K-- 169 (313)
T ss_pred eEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHH-hcCC--C--
Confidence 5544444 4455667999988888777899999988765432 211 12368999999999987766543 3211 1
Q ss_pred HHHHHHHHHHHhCCCchHHHHH
Q 004707 79 FKRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPLal~vl 100 (734)
.+.++.++.+++|.|..+..+
T Consensus 170 -~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 170 -EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred -HHHHHHHHHHcCCCHHHHHHH
Confidence 223567899999998755444
No 88
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.41 E-value=5.1 Score=43.41 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=79.9
Q ss_pred CEEEEEEeCCCChH-----HHHhHhccCCC-CC--CCcEEEEEcCChhHHhhcC------C-CceEECCCCCHHHHHHHH
Q 004707 1 MKVLIVLDDVNKDE-----QLEGLIGGLDQ-YG--PGSRIVVTTRDKGVLENFG------V-EKIYRVNGLEFYEAFELF 65 (734)
Q Consensus 1 kk~LiVLDDV~~~~-----~~~~l~~~~~~-~~--~GSrIivTTR~~~v~~~~~------~-~~~y~v~~L~~~~s~~Lf 65 (734)
++++||||+++... .+..+.....+ .. ..-.+|.+|++........ . ...+++++.+.++..+++
T Consensus 129 ~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il 208 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDIL 208 (365)
T ss_pred CeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHH
Confidence 36789999998872 13333322111 11 2234566665554322211 1 246789999999999999
Q ss_pred HHhh---cCCCCCchhHHHHHHHHHHHhCCCc-hHHHHHHhhcC----------CcccHHHHHHHhhhhcCCCchhHHHH
Q 004707 66 YYFA---FKENHCPEDFKRDSRRVVKYADGNP-LVLKVLGSSLK----------RKSHWGNVLDDLNRICESDIHDIHDI 131 (734)
Q Consensus 66 ~~~a---f~~~~~~~~~~~l~~~i~~~c~GlP-Lal~vlgs~L~----------~~~~W~~~l~~l~~~~~~~i~~i~~~ 131 (734)
..++ +......++..++..+++....|.| .|+..+-.... +.++.+.+.+.+. ...
T Consensus 209 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~ 278 (365)
T TIGR02928 209 ENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE----------KDR 278 (365)
T ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHH
Confidence 8775 3333344455556666777777887 44444322211 2233333333321 223
Q ss_pred HHhhcccCChhhhhhhhhhccc
Q 004707 132 LKISFNELMPKMKSIFLDIACF 153 (734)
Q Consensus 132 L~~Syd~L~~~~k~~fl~ia~f 153 (734)
..-+..+||.++|..+..++..
T Consensus 279 ~~~~i~~l~~~~~~~l~ai~~~ 300 (365)
T TIGR02928 279 LLELIRGLPTHSKLVLLAIANL 300 (365)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3445678999888777766643
No 89
>PF13173 AAA_14: AAA domain
Probab=87.86 E-value=0.57 Score=42.39 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=46.3
Q ss_pred EEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhhc------CCCceEECCCCCHHHH
Q 004707 2 KVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLENF------GVEKIYRVNGLEFYEA 61 (734)
Q Consensus 2 k~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~------~~~~~y~v~~L~~~~s 61 (734)
+.+|+||+|....+|......+-..++..+||+|+.....+..- |-...++|.+|+..|-
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 56899999999988888777665566778999999998887541 2224789999988764
No 90
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=87.55 E-value=1.2 Score=48.33 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=55.7
Q ss_pred EEEEEeCCCCh-------------H---HHHhHhccCCCC--CCCcEEEEEcCC-----hhHHhhcCCCceEECCCCCHH
Q 004707 3 VLIVLDDVNKD-------------E---QLEGLIGGLDQY--GPGSRIVVTTRD-----KGVLENFGVEKIYRVNGLEFY 59 (734)
Q Consensus 3 ~LiVLDDV~~~-------------~---~~~~l~~~~~~~--~~GSrIivTTR~-----~~v~~~~~~~~~y~v~~L~~~ 59 (734)
.+|+|||++.. + .+..+......+ ..+.+||.||+. ..+++....+..++++.++.+
T Consensus 217 ~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~ 296 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred cEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHH
Confidence 58999999754 1 133333222222 246788888884 444433345678999999999
Q ss_pred HHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHhCCCc
Q 004707 60 EAFELFYYFAFKENHCP-EDFKRDSRRVVKYADGNP 94 (734)
Q Consensus 60 ~s~~Lf~~~af~~~~~~-~~~~~l~~~i~~~c~GlP 94 (734)
+..++|..++.+..... .++. .+++.+.|..
T Consensus 297 ~r~~Il~~~~~~~~l~~~~~~~----~la~~t~g~s 328 (364)
T TIGR01242 297 GRLEILKIHTRKMKLAEDVDLE----AIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHhcCCCCccCCHH----HHHHHcCCCC
Confidence 99999999886644332 2444 4555566654
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.06 E-value=0.43 Score=29.68 Aligned_cols=21 Identities=52% Similarity=0.737 Sum_probs=13.6
Q ss_pred CCCCcEEeeccCCCCcccccc
Q 004707 393 LSSLEELDLSGNSFESLPVSI 413 (734)
Q Consensus 393 l~~L~~L~Ls~n~l~~lp~~l 413 (734)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776543
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.06 E-value=0.43 Score=29.68 Aligned_cols=21 Identities=52% Similarity=0.737 Sum_probs=13.6
Q ss_pred CCCCcEEeeccCCCCcccccc
Q 004707 393 LSSLEELDLSGNSFESLPVSI 413 (734)
Q Consensus 393 l~~L~~L~Ls~n~l~~lp~~l 413 (734)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356677777777777776543
No 93
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.39 E-value=5.9 Score=42.92 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=61.6
Q ss_pred EEEEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCChh-HHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDKG-VLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+||++... ....|...+..-.++..+|++|.+.+ ++... .-...+.+.+++.++..++.....- . ..+
T Consensus 142 ~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~--~-~~~ 218 (365)
T PRK07471 142 WRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP--D-LPD 218 (365)
T ss_pred CEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc--c-CCH
Confidence 3478999997653 46666655554445677777777654 33222 2235899999999999999877541 1 111
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVLG 101 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vlg 101 (734)
..+ ..++..++|.|+....+.
T Consensus 219 --~~~-~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 219 --DPR-AALAALAEGSVGRALRLA 239 (365)
T ss_pred --HHH-HHHHHHcCCCHHHHHHHh
Confidence 112 678999999998665553
No 94
>PRK09087 hypothetical protein; Validated
Probab=85.59 E-value=4.3 Score=40.76 Aligned_cols=87 Identities=9% Similarity=0.127 Sum_probs=53.1
Q ss_pred EEEEeCCCCh----HHHHhHhccCCCCCCCcEEEEEcC---------ChhHHhhcCCCceEECCCCCHHHHHHHHHHhhc
Q 004707 4 LIVLDDVNKD----EQLEGLIGGLDQYGPGSRIVVTTR---------DKGVLENFGVEKIYRVNGLEFYEAFELFYYFAF 70 (734)
Q Consensus 4 LiVLDDV~~~----~~~~~l~~~~~~~~~GSrIivTTR---------~~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~af 70 (734)
+|+||||... +++-.+.... ...|..||+|++ .+.+...+....++++++++.++-.+++.+++-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 6889999542 2222222222 234677999886 345555566667999999999999999988874
Q ss_pred CC-CCCchhHHHHHHHHHHHhCCCch
Q 004707 71 KE-NHCPEDFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 71 ~~-~~~~~~~~~l~~~i~~~c~GlPL 95 (734)
.. -..+ +++..-+++.+.|-.-
T Consensus 168 ~~~~~l~---~ev~~~La~~~~r~~~ 190 (226)
T PRK09087 168 DRQLYVD---PHVVYYLVSRMERSLF 190 (226)
T ss_pred HcCCCCC---HHHHHHHHHHhhhhHH
Confidence 32 2222 2333445555554443
No 95
>PRK08727 hypothetical protein; Validated
Probab=84.81 E-value=2.6 Score=42.59 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=44.5
Q ss_pred EEEEeCCCCh---HHHHh-HhccCCC-CCCCcEEEEEcCC---------hhHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKD---EQLEG-LIGGLDQ-YGPGSRIVVTTRD---------KGVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~---~~~~~-l~~~~~~-~~~GSrIivTTR~---------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
+|||||+... .+|+. +..-+.. ...|..||+|++. +.+...++...++++++++.++-.+++.++|
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 7999999743 23332 2221111 2346779999974 3333333345689999999999999999877
Q ss_pred cC
Q 004707 70 FK 71 (734)
Q Consensus 70 f~ 71 (734)
..
T Consensus 176 ~~ 177 (233)
T PRK08727 176 QR 177 (233)
T ss_pred HH
Confidence 64
No 96
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.01 E-value=0.018 Score=64.21 Aligned_cols=161 Identities=23% Similarity=0.246 Sum_probs=84.8
Q ss_pred hhhCCCcCcEEEeecCCCcc-----cCccccCC-CCCcEeeecCCCCCCC----CCcccCCCCccceeeccCcccc----
Q 004707 271 ILEKMEHLKHIYLQRTAITE-----LPSSFENL-LGLESLSVRGCSKLDK----LPDNIGNLESLAYILADGSAIS---- 336 (734)
Q Consensus 271 ~~~~l~~L~~L~L~~n~l~~-----lp~~i~~l-~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~l~~n~l~---- 336 (734)
.+..+..|..|++++|.+.. +-..+... ..|++|++..|..... +...+.....|+.++++.|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 34455566666666666551 11112222 3455566665554432 3334445566666666666553
Q ss_pred -cCCcccc----CCCCCcEEEcCCCCCCCccC---cccCCCCCC-ccEEEeecCCCCC-----CCccCCCC-CCCcEEee
Q 004707 337 -QLPSSVA----DSNVLRYLWFPRCRNLVSLP---PLLLSGLSS-LECLHLRDCAVTD-----IPQEIGCL-SSLEELDL 401 (734)
Q Consensus 337 -~lp~~i~----~l~~L~~L~l~~~~~l~~l~---~~~l~~l~~-L~~L~Ls~n~l~~-----lp~~l~~l-~~L~~L~L 401 (734)
.++..+. ...+++.|++.+|......- ...+...++ +.+|++..|++.+ +...+..+ ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 1222222 35566666666655331100 011223334 5557777777664 23334444 56777777
Q ss_pred ccCCCC-----cccccccCCCCCcEEeeecCCCCC
Q 004707 402 SGNSFE-----SLPVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 402 s~n~l~-----~lp~~l~~l~~L~~L~L~~n~~l~ 431 (734)
+.|.++ .+...+..++.++.|.++.|.+..
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 777776 344555666777777777776543
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=83.69 E-value=4.5 Score=39.17 Aligned_cols=87 Identities=11% Similarity=0.218 Sum_probs=60.4
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-+||+||++.. ++++.|...+..-.+.+.+|++|++. .+.... ....++++++++.++..+...+. + ..
T Consensus 97 ~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---g--i~- 170 (188)
T TIGR00678 97 RRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---G--IS- 170 (188)
T ss_pred eEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc---C--CC-
Confidence 447889999765 34777777776656677788777653 333322 12358999999999998888776 1 11
Q ss_pred hHHHHHHHHHHHhCCCchH
Q 004707 78 DFKRDSRRVVKYADGNPLV 96 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLa 96 (734)
.+.+..+++.++|.|..
T Consensus 171 --~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 171 --EEAAELLLALAGGSPGA 187 (188)
T ss_pred --HHHHHHHHHHcCCCccc
Confidence 35577899999998853
No 98
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.10 E-value=4.9 Score=44.46 Aligned_cols=95 Identities=13% Similarity=0.192 Sum_probs=58.3
Q ss_pred CEEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEE--EcCChh--HHhh-cCCCceEECCCCCHHHHHHHHHHhhcCCC
Q 004707 1 MKVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVV--TTRDKG--VLEN-FGVEKIYRVNGLEFYEAFELFYYFAFKEN 73 (734)
Q Consensus 1 kk~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIiv--TTR~~~--v~~~-~~~~~~y~v~~L~~~~s~~Lf~~~af~~~ 73 (734)
++.+|+||+|+.. .+.+.|..... .|..++| ||.+.. +... ..-..++++++++.++..+++.+.+-...
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~ 168 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE 168 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh
Confidence 3578999999865 46666665543 3565555 344322 1111 11126899999999999999987653211
Q ss_pred CCc-hhHHHHHHHHHHHhCCCchHHH
Q 004707 74 HCP-EDFKRDSRRVVKYADGNPLVLK 98 (734)
Q Consensus 74 ~~~-~~~~~l~~~i~~~c~GlPLal~ 98 (734)
... .--.+....++++|+|.+..+.
T Consensus 169 ~~~i~i~~~al~~l~~~s~Gd~R~al 194 (413)
T PRK13342 169 RGLVELDDEALDALARLANGDARRAL 194 (413)
T ss_pred cCCCCCCHHHHHHHHHhCCCCHHHHH
Confidence 100 1123556678889999886543
No 99
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.21 E-value=0.92 Score=28.18 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=13.4
Q ss_pred CCccceeeccCcccccCCccc
Q 004707 322 LESLAYILADGSAISQLPSSV 342 (734)
Q Consensus 322 l~~L~~L~l~~n~l~~lp~~i 342 (734)
+++|+.|++++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356667777777777666544
No 100
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.21 E-value=0.92 Score=28.18 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=13.4
Q ss_pred CCccceeeccCcccccCCccc
Q 004707 322 LESLAYILADGSAISQLPSSV 342 (734)
Q Consensus 322 l~~L~~L~l~~n~l~~lp~~i 342 (734)
+++|+.|++++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356667777777777666544
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=80.68 E-value=4.9 Score=40.59 Aligned_cols=88 Identities=14% Similarity=0.246 Sum_probs=51.8
Q ss_pred EEEEeCCCCh---HHHHh-HhccCCC-CCCCcEEEEEcCChh---------HHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKD---EQLEG-LIGGLDQ-YGPGSRIVVTTRDKG---------VLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~---~~~~~-l~~~~~~-~~~GSrIivTTR~~~---------v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
++|+|||... .+|+. +..-+.. ...|.+||+|++... +...++...++++++++.++-.++...+|
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 5889999633 34543 3332221 235778888887432 12223334689999999999999998777
Q ss_pred cCCC-CCchhHHHHHHHHHHHhCCCc
Q 004707 70 FKEN-HCPEDFKRDSRRVVKYADGNP 94 (734)
Q Consensus 70 f~~~-~~~~~~~~l~~~i~~~c~GlP 94 (734)
.... ..+ .++..-+++++.|-.
T Consensus 180 ~~~~~~l~---~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 180 SRRGLHLT---DEVGHFILTRGTRSM 202 (234)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCCH
Confidence 5432 122 244445555555543
No 102
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.25 E-value=0.091 Score=51.48 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=39.0
Q ss_pred CcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCC
Q 004707 276 EHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPR 355 (734)
Q Consensus 276 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~ 355 (734)
...+.||++.|++..+-..++-++.|..|+++.| -...+|..++.+..+..+++..|..+..|.+.+..+.++++++.+
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 3344444444444444444444444555555542 234445555555555555555555555555555555555555444
Q ss_pred C
Q 004707 356 C 356 (734)
Q Consensus 356 ~ 356 (734)
+
T Consensus 121 ~ 121 (326)
T KOG0473|consen 121 T 121 (326)
T ss_pred C
Confidence 3
No 103
>PF14516 AAA_35: AAA-like domain
Probab=78.13 E-value=26 Score=37.38 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=42.1
Q ss_pred CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhcC
Q 004707 46 GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK 105 (734)
Q Consensus 46 ~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~ 105 (734)
.+....++++++.+|...|...+... .. + ...+++.+..+|.|--+..++..+.
T Consensus 191 NIg~~i~L~~Ft~~ev~~L~~~~~~~--~~-~---~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 191 NIGQPIELPDFTPEEVQELAQRYGLE--FS-Q---EQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred ccccceeCCCCCHHHHHHHHHhhhcc--CC-H---HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34457889999999999999887533 11 1 1177899999999998888888886
No 104
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=77.90 E-value=8.8 Score=41.31 Aligned_cols=95 Identities=7% Similarity=0.076 Sum_probs=59.6
Q ss_pred EEEEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEc-CChhHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTT-RDKGVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+++... ..+.|...+..-..+..+|++| +-..++.... -...+++.+++.++..+...+.+.... .
T Consensus 142 ~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~-- 218 (351)
T PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-S-- 218 (351)
T ss_pred ceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-C--
Confidence 3478999998754 3555655554433445544444 4444433321 125899999999999999987442211 1
Q ss_pred hHHHHHHHHHHHhCCCchHHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vl 100 (734)
-.+....+++.++|.|.....+
T Consensus 219 -~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 219 -DGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHH
Confidence 1334568899999999865544
No 105
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.90 E-value=0.071 Score=52.21 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=51.0
Q ss_pred CCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCC
Q 004707 367 LSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 367 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l 430 (734)
++.++.|..|+++.|.+.-+|.+++....+..+++..|..+..|.+.+..++++++++.++.+.
T Consensus 61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 4456677778888888877888888888888888888888888888888888888888887653
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=76.88 E-value=8.4 Score=38.94 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=44.1
Q ss_pred EEEEeCCCCh---HHHHhHh-ccCCC-CCCC-cEEEEEcCCh---------hHHhhcCCCceEECCCCCHHHHHHHHHHh
Q 004707 4 LIVLDDVNKD---EQLEGLI-GGLDQ-YGPG-SRIVVTTRDK---------GVLENFGVEKIYRVNGLEFYEAFELFYYF 68 (734)
Q Consensus 4 LiVLDDV~~~---~~~~~l~-~~~~~-~~~G-SrIivTTR~~---------~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~ 68 (734)
+++||||... .+|+... ..+.. ...| .+||+||+.. .+...+....+++++++++++-.+++.++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 7899999664 3454322 11111 1134 3799998643 44445555679999999999999998776
Q ss_pred hcC
Q 004707 69 AFK 71 (734)
Q Consensus 69 af~ 71 (734)
|-.
T Consensus 180 a~~ 182 (235)
T PRK08084 180 ARL 182 (235)
T ss_pred HHH
Confidence 643
No 107
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=76.12 E-value=15 Score=39.60 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=61.7
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChh-HHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKG-VLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
-+||+|+++.. ...+.+...+....+...+|++|.+.+ +.... .....++.++++.++..+.....+-+....-+
T Consensus 119 ~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~- 197 (355)
T TIGR02397 119 KVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE- 197 (355)
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 37889999765 456777666655556777777775544 33322 22357889999999988888876643322111
Q ss_pred HHHHHHHHHHHhCCCchHHHH
Q 004707 79 FKRDSRRVVKYADGNPLVLKV 99 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPLal~v 99 (734)
.+....+++.++|.|..+..
T Consensus 198 -~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 198 -DEALELIARAADGSLRDALS 217 (355)
T ss_pred -HHHHHHHHHHcCCChHHHHH
Confidence 25566788889998865443
No 108
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.65 E-value=1.6 Score=27.22 Aligned_cols=18 Identities=50% Similarity=0.737 Sum_probs=13.6
Q ss_pred CCCcEEeeccCCCCcccc
Q 004707 394 SSLEELDLSGNSFESLPV 411 (734)
Q Consensus 394 ~~L~~L~Ls~n~l~~lp~ 411 (734)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467778888888887774
No 109
>PRK06620 hypothetical protein; Validated
Probab=75.40 E-value=9.9 Score=37.81 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=41.0
Q ss_pred EEEEeCCCChHHHHhHhccCCC-CCCCcEEEEEcCChh-------HHhhcCCCceEECCCCCHHHHHHHHHHhhc
Q 004707 4 LIVLDDVNKDEQLEGLIGGLDQ-YGPGSRIVVTTRDKG-------VLENFGVEKIYRVNGLEFYEAFELFYYFAF 70 (734)
Q Consensus 4 LiVLDDV~~~~~~~~l~~~~~~-~~~GSrIivTTR~~~-------v~~~~~~~~~y~v~~L~~~~s~~Lf~~~af 70 (734)
++++|||...++ +.+..-+.. ...|..||+|++... +...+...-+++++++++++-.++..+.+-
T Consensus 88 ~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 88 AFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred EEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 688999975433 122221111 145778999987432 333344445899999999987777776653
No 110
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=75.36 E-value=14 Score=41.83 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=61.4
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEE-EcCChhHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVV-TTRDKGVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIiv-TTR~~~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+++.. .+++.|...+....+..++|+ ||+.+.+..... -...+++++++.++..+.+...+-+.....+
T Consensus 129 ~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie 208 (507)
T PRK06645 129 HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD 208 (507)
T ss_pred cEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 457899999875 458888777765556667654 555555554432 2357999999999999999887754332111
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
.+....|++.++|.+-
T Consensus 209 --~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 209 --IEALRIIAYKSEGSAR 224 (507)
T ss_pred --HHHHHHHHHHcCCCHH
Confidence 2334567778888663
No 111
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.59 E-value=0.43 Score=46.05 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=19.0
Q ss_pred cCcEEEeecCCCccc-CccccCCCCCcEeeecCCCCC
Q 004707 277 HLKHIYLQRTAITEL-PSSFENLLGLESLSVRGCSKL 312 (734)
Q Consensus 277 ~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~Ls~~~~~ 312 (734)
.++.++-+++.|... -..+.+++.++.|.+.+|...
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 355666666655422 122455566666666665543
No 112
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.86 E-value=20 Score=38.90 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=61.0
Q ss_pred EEEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
-++|+|+++... .++.+........+..++|++|.+. .+.... +-...+++++++.++..+.....+-+....-
T Consensus 121 kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-- 198 (363)
T PRK14961 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-- 198 (363)
T ss_pred eEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--
Confidence 478999998775 4777777766555677778777653 333321 2236899999999999888777664322111
Q ss_pred HHHHHHHHHHHhCCCch
Q 004707 79 FKRDSRRVVKYADGNPL 95 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPL 95 (734)
-.+....+++.++|.|-
T Consensus 199 ~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 199 DEYALKLIAYHAHGSMR 215 (363)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 12345678888999875
No 113
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=71.98 E-value=13 Score=39.67 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=54.6
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
+|||||++... ..+.|...+....+..++|+||.. ..+.... .....+++++++.++..+.+...+-+.... --
T Consensus 128 vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~ 205 (337)
T PRK12402 128 TILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YD 205 (337)
T ss_pred EEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CC
Confidence 79999997653 344555444444456788887754 3332222 122478889999999888888765432211 11
Q ss_pred HHHHHHHHHHhCCCch
Q 004707 80 KRDSRRVVKYADGNPL 95 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPL 95 (734)
.+....++++++|.+-
T Consensus 206 ~~al~~l~~~~~gdlr 221 (337)
T PRK12402 206 DDGLELIAYYAGGDLR 221 (337)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 3455567777877654
No 114
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=71.82 E-value=9.6 Score=41.87 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=51.9
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhhc------CCCceEECCCCCHHHHHHHHH
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLENF------GVEKIYRVNGLEFYEAFELFY 66 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~------~~~~~y~v~~L~~~~s~~Lf~ 66 (734)
+|.+|+||.|.....|+.....+-..++. +|+||+-+..++..- |-...+++-||+..|-..+-.
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 46789999999999999888877767777 899999887765542 334689999999999887643
No 115
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.27 E-value=16 Score=41.41 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=61.4
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-+||||+++.. ++++.|...+....+...+|++|.. +.+.... .-...|++++++.++..+.+.+.+-+.....
T Consensus 117 ~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i- 195 (504)
T PRK14963 117 RKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA- 195 (504)
T ss_pred CeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 347889999865 4577887776655556666666644 3443322 2235899999999999999988775433211
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
-.+....|++.++|.+-
T Consensus 196 -~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 196 -EPEALQLVARLADGAMR 212 (504)
T ss_pred -CHHHHHHHHHHcCCCHH
Confidence 12455678888888774
No 116
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.83 E-value=32 Score=40.71 Aligned_cols=179 Identities=19% Similarity=0.296 Sum_probs=96.1
Q ss_pred EEEEEEeCCCCh------HHHHhHhccCCCCCCCcEEEEEcCChhHHhh--cCC-CceEECCC----CCHHHHHHHHHHh
Q 004707 2 KVLIVLDDVNKD------EQLEGLIGGLDQYGPGSRIVVTTRDKGVLEN--FGV-EKIYRVNG----LEFYEAFELFYYF 68 (734)
Q Consensus 2 k~LiVLDDV~~~------~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~--~~~-~~~y~v~~----L~~~~s~~Lf~~~ 68 (734)
...+||||-.-. +-++.+....| ++=..|||||..-=+.. +.+ +...++.. ++.+|+-++|..
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~- 205 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAP---ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND- 205 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCC---CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHH-
Confidence 468999998443 23555555433 67889999999642211 111 12223221 455555555543
Q ss_pred hcCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhcCCcccHHHHHHHh--hhhcCCCc-----------hhHHH-HHHh
Q 004707 69 AFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLKRKSHWGNVLDDL--NRICESDI-----------HDIHD-ILKI 134 (734)
Q Consensus 69 af~~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~~~~~W~~~l~~l--~~~~~~~i-----------~~i~~-~L~~ 134 (734)
.+|+||--..+.......+-|-.++.-. ....+... ..+.+ ...-
T Consensus 206 ---------------------~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~ee 264 (894)
T COG2909 206 ---------------------RGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEE 264 (894)
T ss_pred ---------------------cCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHH
Confidence 3344444444433333444454444311 11100100 00111 1223
Q ss_pred hcccCChhhhhhhhhhcccccCCChhHHHHHHH-hhccchhHHHhhcCCceee----CCeEEecHHHHHHHHHHHhc
Q 004707 135 SFNELMPKMKSIFLDIACFFEGEDKDFVTRILD-DYGSYGLEVLIDKSLITVS----HNCLRMHDLLQEMGREIVRQ 206 (734)
Q Consensus 135 Syd~L~~~~k~~fl~ia~f~~~~~~~~~~~~l~-~~~~~~i~~L~~ksli~~~----~~~~~mHdll~~~~~~i~~~ 206 (734)
-+|.||.+.|.-.+-+|.+.. ++-+....+.. +-|..-++.|-.++|+-+. .+.++.|.+..|+-+.-.+.
T Consensus 265 Vld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 265 VLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 468999999999998888842 12222222221 1235558889999987644 56899999999987655443
No 117
>PLN03025 replication factor C subunit; Provisional
Probab=68.44 E-value=21 Score=37.92 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=55.6
Q ss_pred EEEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCC-CCch
Q 004707 3 VLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKEN-HCPE 77 (734)
Q Consensus 3 ~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~-~~~~ 77 (734)
-+|+|||++... +-+.|........+.+|+|++|... .+.... .-..+++++++++++..+.+...+-+.. ..+
T Consensus 101 kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~- 179 (319)
T PLN03025 101 KIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV- 179 (319)
T ss_pred EEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 478999998763 3455554444456678888877553 222111 1125789999999999888877764322 122
Q ss_pred hHHHHHHHHHHHhCCCc
Q 004707 78 DFKRDSRRVVKYADGNP 94 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlP 94 (734)
.+....+++.++|-.
T Consensus 180 --~~~l~~i~~~~~gDl 194 (319)
T PLN03025 180 --PEGLEAIIFTADGDM 194 (319)
T ss_pred --HHHHHHHHHHcCCCH
Confidence 234567777787755
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.59 E-value=28 Score=40.26 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=64.9
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCC-Cc
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENH-CP 76 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~-~~ 76 (734)
+-+||+|+++.. +.++.|...+..-.+...+|++|.+ ..+.... .-...++++.++.++..+.+...+.+... ..
T Consensus 120 ~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id 199 (624)
T PRK14959 120 YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD 199 (624)
T ss_pred ceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 457899999776 4567777666544445666666655 4444332 11247899999999999888876654332 22
Q ss_pred hhHHHHHHHHHHHhCCCc-hHHHHHHhhc
Q 004707 77 EDFKRDSRRVVKYADGNP-LVLKVLGSSL 104 (734)
Q Consensus 77 ~~~~~l~~~i~~~c~GlP-Lal~vlgs~L 104 (734)
.+....++++++|-+ -|+..+...+
T Consensus 200 ---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 200 ---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 244567888888854 6777776544
No 119
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=65.56 E-value=24 Score=37.67 Aligned_cols=92 Identities=14% Similarity=0.176 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
||+ |+|+++.. +..+.|...+..-.++..+|.||.+. .++... .-...+.+.+++.+++.+.+.... .+ ..
T Consensus 108 kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~~-- 182 (328)
T PRK05707 108 KVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-SD-- 182 (328)
T ss_pred eEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-CC--
Confidence 555 56999875 34666665554444577777777765 444332 123579999999999998886543 11 11
Q ss_pred hHHHHHHHHHHHhCCCchHHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vl 100 (734)
.+-+..++..++|-|+.+..+
T Consensus 183 --~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 --ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --hHHHHHHHHHcCCCHHHHHHH
Confidence 233457788999999865554
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=63.47 E-value=22 Score=39.72 Aligned_cols=95 Identities=12% Similarity=0.126 Sum_probs=57.3
Q ss_pred EEEEeCCCChH---HH-HhHhccCCC-CCCCcEEEEEcCC---------hhHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKDE---QL-EGLIGGLDQ-YGPGSRIVVTTRD---------KGVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~~---~~-~~l~~~~~~-~~~GSrIivTTR~---------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
++||||+.... .+ +.+..-+.. ...|..||+|+.. +.+...+...-+.++++++.++-.+++.+++
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 78999996532 22 333222221 2345578888653 2333334445688899999999999999887
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCchHHH
Q 004707 70 FKENHCPEDFKRDSRRVVKYADGNPLVLK 98 (734)
Q Consensus 70 f~~~~~~~~~~~l~~~i~~~c~GlPLal~ 98 (734)
-.......--.+...-|++.+.|.|-.+.
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ 317 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDDVRKIK 317 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCCHHHHH
Confidence 43221001124566678888888885443
No 121
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=63.45 E-value=20 Score=35.86 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=51.0
Q ss_pred EEEEeCCCCh--HHHHhHhccCCC-CCCCcE-EEEEcCChhHHh--------hcCCCceEECCCCCHHHHHHHHHHhhcC
Q 004707 4 LIVLDDVNKD--EQLEGLIGGLDQ-YGPGSR-IVVTTRDKGVLE--------NFGVEKIYRVNGLEFYEAFELFYYFAFK 71 (734)
Q Consensus 4 LiVLDDV~~~--~~~~~l~~~~~~-~~~GSr-IivTTR~~~v~~--------~~~~~~~y~v~~L~~~~s~~Lf~~~af~ 71 (734)
+||+|||+.. .+-+.|...+.. ...|.. ||+|++...... .+.-...+++++|++++-.+++...+=+
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 6899999654 222333332221 124553 666665432211 2222358899999988766666544322
Q ss_pred -CCCCchhHHHHHHHHHHHhCCCchHHHHHH
Q 004707 72 -ENHCPEDFKRDSRRVVKYADGNPLVLKVLG 101 (734)
Q Consensus 72 -~~~~~~~~~~l~~~i~~~c~GlPLal~vlg 101 (734)
+-..+ .+....+++.+.|.+..++.+-
T Consensus 173 ~~v~l~---~~al~~L~~~~~gn~~~l~~~l 200 (227)
T PRK08903 173 RGLQLA---DEVPDYLLTHFRRDMPSLMALL 200 (227)
T ss_pred cCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 11222 2445556667888887665553
No 122
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=63.02 E-value=33 Score=40.50 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=62.5
Q ss_pred EEEEeCCCChHH--HHhHhccCCCCCCCcEEEEEcCChhHH-hhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDEQ--LEGLIGGLDQYGPGSRIVVTTRDKGVL-ENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~~--~~~l~~~~~~~~~GSrIivTTR~~~v~-~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
++|||+|+.... ++.|...+..-.+..++|+||++.+-. ... .-...++++.++.++..+.+.+.+-+....- -
T Consensus 122 VIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d 199 (830)
T PRK07003 122 VYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF--E 199 (830)
T ss_pred EEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--C
Confidence 678999988754 888877766555678888888775432 221 1135899999999999988877653322111 1
Q ss_pred HHHHHHHHHHhCCCc-hHHHHH
Q 004707 80 KRDSRRVVKYADGNP-LVLKVL 100 (734)
Q Consensus 80 ~~l~~~i~~~c~GlP-Lal~vl 100 (734)
.+..+.|++.++|-. -|+..+
T Consensus 200 ~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 200 PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 344567888888854 455443
No 123
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=61.74 E-value=64 Score=34.22 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=60.3
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCC-hhHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRD-KGVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
.+|+|+++... ..++|.+.+..-.+++.+|.+|.+ ..++.... -...+.+.+++.+++.+.+.... . .
T Consensus 111 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~--- 182 (319)
T PRK06090 111 LFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T--- 182 (319)
T ss_pred EEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c---
Confidence 57789997764 477777666655567777777665 45554432 23589999999999999876431 1 1
Q ss_pred HHHHHHHHHHhCCCchHHHHHH
Q 004707 80 KRDSRRVVKYADGNPLVLKVLG 101 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal~vlg 101 (734)
.+..++..++|.|+.+..+.
T Consensus 183 --~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 183 --VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred --hHHHHHHHcCCCHHHHHHHh
Confidence 13567899999999766553
No 124
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.47 E-value=1.8 Score=41.99 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=35.2
Q ss_pred CcEEEecCCcCCCcCchhhhCCCcCcEEEeecCC-Cc--ccCccccCCCCCcEeeecCCCCCCCCC-cccCCCCccceee
Q 004707 254 LVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTA-IT--ELPSSFENLLGLESLSVRGCSKLDKLP-DNIGNLESLAYIL 329 (734)
Q Consensus 254 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~-l~--~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~l~~l~~L~~L~ 329 (734)
++.+|-+++.+...--+-+.+++.++.|.+.++. +. .+..--+-.++|+.|+|++|..++.-. ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3445544444333323334444445555554442 11 010001134677777777776554321 2244555555554
Q ss_pred cc
Q 004707 330 AD 331 (734)
Q Consensus 330 l~ 331 (734)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 125
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=61.34 E-value=6.4 Score=39.17 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=31.2
Q ss_pred EEEEeCCCChH---HHHhHhccCCCCCCCcEEEEEcCChhHHhhcCCCceEECC
Q 004707 4 LIVLDDVNKDE---QLEGLIGGLDQYGPGSRIVVTTRDKGVLENFGVEKIYRVN 54 (734)
Q Consensus 4 LiVLDDV~~~~---~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~~~~~y~v~ 54 (734)
++|||||+..- ....+...+....+++.+||||-++.++... +..|.|.
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a--~~~~~v~ 212 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA--DKLIGVT 212 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT---SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 68999997642 2444444444455678999999999998875 5556554
No 126
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=59.50 E-value=46 Score=34.96 Aligned_cols=90 Identities=14% Similarity=0.256 Sum_probs=56.2
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCC-Cch
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENH-CPE 77 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~-~~~ 77 (734)
-+||+|+++.. +..+.|........+.+++|+++.. +.+.+.. .....+++++++.++........+-+... ..
T Consensus 104 ~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~- 182 (319)
T PRK00440 104 KIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEIT- 182 (319)
T ss_pred eEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 47899999754 3355565555555566778877743 2222211 11246899999999998888877754332 22
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
.+....+++.++|.+-
T Consensus 183 --~~al~~l~~~~~gd~r 198 (319)
T PRK00440 183 --DDALEAIYYVSEGDMR 198 (319)
T ss_pred --HHHHHHHHHHcCCCHH
Confidence 2345567788888764
No 127
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=58.83 E-value=28 Score=34.73 Aligned_cols=68 Identities=10% Similarity=0.164 Sum_probs=39.5
Q ss_pred EEEEeCCCChH---HHHh-HhccCCC-CCCCcEEEEEcCCh---------hHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKDE---QLEG-LIGGLDQ-YGPGSRIVVTTRDK---------GVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~~---~~~~-l~~~~~~-~~~GSrIivTTR~~---------~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
+++||||+... .|+. +..-+.. ...|-+||+|++.. .+...+...-++++++++.++-.+++.++|
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 68999996642 2322 2221211 24577899999543 222233345589999999999999999888
Q ss_pred cC
Q 004707 70 FK 71 (734)
Q Consensus 70 f~ 71 (734)
-.
T Consensus 180 ~~ 181 (219)
T PF00308_consen 180 KE 181 (219)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 128
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.72 E-value=64 Score=36.34 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=59.3
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEE-cCChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCC-CCc
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVT-TRDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKEN-HCP 76 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivT-TR~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~-~~~ 76 (734)
+-+||+|+++.. ++.+.|...+........+|++ |....+.... ....++++++++.++..+.+...+-... ...
T Consensus 118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~ 197 (472)
T PRK14962 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID 197 (472)
T ss_pred eEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC
Confidence 458899999765 4466676665544444554444 4334444332 1235899999999998888877764332 222
Q ss_pred hhHHHHHHHHHHHhCC-CchHHHHHHh
Q 004707 77 EDFKRDSRRVVKYADG-NPLVLKVLGS 102 (734)
Q Consensus 77 ~~~~~l~~~i~~~c~G-lPLal~vlgs 102 (734)
.+....++++++| ++.|+..+-.
T Consensus 198 ---~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 198 ---REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2344566766654 5666666644
No 129
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=57.71 E-value=38 Score=37.10 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=51.5
Q ss_pred EEEEEeCCCCh-------------HHHH---hHhccCCCC--CCCcEEEEEcCChhHHhh-----cCCCceEECCCCCHH
Q 004707 3 VLIVLDDVNKD-------------EQLE---GLIGGLDQY--GPGSRIVVTTRDKGVLEN-----FGVEKIYRVNGLEFY 59 (734)
Q Consensus 3 ~LiVLDDV~~~-------------~~~~---~l~~~~~~~--~~GSrIivTTR~~~v~~~-----~~~~~~y~v~~L~~~ 59 (734)
.+|+|||++.. +... .+......+ ..+-+||.||.....+.. -..+..++++.++.+
T Consensus 226 ~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~ 305 (389)
T PRK03992 226 SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEE 305 (389)
T ss_pred eEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHH
Confidence 57899999764 1112 222222211 235678888875433222 134678999999999
Q ss_pred HHHHHHHHhhcCCCCC-chhHHHHHHHHHHHhCCC
Q 004707 60 EAFELFYYFAFKENHC-PEDFKRDSRRVVKYADGN 93 (734)
Q Consensus 60 ~s~~Lf~~~af~~~~~-~~~~~~l~~~i~~~c~Gl 93 (734)
+-.++|..++.+.... ..++..+ ++.+.|.
T Consensus 306 ~R~~Il~~~~~~~~~~~~~~~~~l----a~~t~g~ 336 (389)
T PRK03992 306 GRLEILKIHTRKMNLADDVDLEEL----AELTEGA 336 (389)
T ss_pred HHHHHHHHHhccCCCCCcCCHHHH----HHHcCCC
Confidence 9999999887543322 2345444 4445554
No 130
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.08 E-value=8.2 Score=24.19 Aligned_cols=16 Identities=50% Similarity=0.760 Sum_probs=9.4
Q ss_pred CCCcEEeeccCCCCcc
Q 004707 394 SSLEELDLSGNSFESL 409 (734)
Q Consensus 394 ~~L~~L~Ls~n~l~~l 409 (734)
++|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=56.49 E-value=59 Score=34.24 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=39.2
Q ss_pred EEEEEeCCCCh---HHHHhHhccCCCCCCCcEEEEEcCChhHH-hhc-CCCceEECCCCCHHHHHHHHHH
Q 004707 3 VLIVLDDVNKD---EQLEGLIGGLDQYGPGSRIVVTTRDKGVL-ENF-GVEKIYRVNGLEFYEAFELFYY 67 (734)
Q Consensus 3 ~LiVLDDV~~~---~~~~~l~~~~~~~~~GSrIivTTR~~~v~-~~~-~~~~~y~v~~L~~~~s~~Lf~~ 67 (734)
-+||+||++.. +..+.|.........+.++|+||...+-+ ... .-..++.++.++.++..+++..
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 36889999765 23344444344455778999999764321 111 1123677777888877776654
No 132
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=56.23 E-value=48 Score=36.34 Aligned_cols=90 Identities=12% Similarity=0.174 Sum_probs=59.0
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
++++||++... ..+.|...+....++..+|++|.+. .+.... .-...+.++.++.++..+.+.... + .+
T Consensus 120 ViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~~--- 192 (394)
T PRK07940 120 IVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---VD--- 192 (394)
T ss_pred EEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---CC---
Confidence 67779997763 3555666555445677777776664 444332 223689999999999998886432 1 11
Q ss_pred HHHHHHHHHHhCCCchHHHHH
Q 004707 80 KRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal~vl 100 (734)
.+.+..++..++|-|.....+
T Consensus 193 ~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 193 PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 244678899999999755444
No 133
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=56.07 E-value=68 Score=33.94 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=56.8
Q ss_pred EEEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCChhHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 3 VLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDKGVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 3 ~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
=++|+|+++... ..++|...+..-..+-=|++|++-..++.... -..+++++++++++..+.+....-.+. .+
T Consensus 126 kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~~-- 201 (314)
T PRK07399 126 KVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--LN-- 201 (314)
T ss_pred eEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--ch--
Confidence 367889997764 45556555443333333444445555555432 236899999999999999887642111 11
Q ss_pred HHHHHHHHHHhCCCchHHHH
Q 004707 80 KRDSRRVVKYADGNPLVLKV 99 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal~v 99 (734)
..-..++..++|-|..+..
T Consensus 202 -~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 202 -INFPELLALAQGSPGAAIA 220 (314)
T ss_pred -hHHHHHHHHcCCCHHHHHH
Confidence 1135788999999975544
No 134
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=54.24 E-value=39 Score=40.18 Aligned_cols=90 Identities=14% Similarity=0.267 Sum_probs=52.8
Q ss_pred EEEEEEeCCCC--hHHHHhHhccCCCCCCCcEEEEE--cCChh--HHhhc-CCCceEECCCCCHHHHHHHHHHhhcC---
Q 004707 2 KVLIVLDDVNK--DEQLEGLIGGLDQYGPGSRIVVT--TRDKG--VLENF-GVEKIYRVNGLEFYEAFELFYYFAFK--- 71 (734)
Q Consensus 2 k~LiVLDDV~~--~~~~~~l~~~~~~~~~GSrIivT--TR~~~--v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~--- 71 (734)
+.++|||||+. ..+.+.|.... ..|+.|+|+ |++.. +.... .-..++++++|+.++..+++.+.+-.
T Consensus 110 ~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHh
Confidence 46899999964 46677776543 356666664 44321 21111 11357999999999999998876531
Q ss_pred --CCCCchhHHHHHHHHHHHhCCCc
Q 004707 72 --ENHCPEDFKRDSRRVVKYADGNP 94 (734)
Q Consensus 72 --~~~~~~~~~~l~~~i~~~c~GlP 94 (734)
+.....--.+....+++++.|.-
T Consensus 187 ~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 187 GYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hcCCcccCCCHHHHHHHHHhCCCCH
Confidence 01111111334456777777753
No 135
>PRK04195 replication factor C large subunit; Provisional
Probab=52.85 E-value=34 Score=38.68 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=53.8
Q ss_pred EEEEEEeCCCChH------HHHhHhccCCCCCCCcEEEEEcCChh-HHh-hc-CCCceEECCCCCHHHHHHHHHHhhcCC
Q 004707 2 KVLIVLDDVNKDE------QLEGLIGGLDQYGPGSRIVVTTRDKG-VLE-NF-GVEKIYRVNGLEFYEAFELFYYFAFKE 72 (734)
Q Consensus 2 k~LiVLDDV~~~~------~~~~l~~~~~~~~~GSrIivTTR~~~-v~~-~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~ 72 (734)
+-+||||||+... .++.+..... ..+..||+|+.+.. +.. .. .....+++++++..+..+.+...+.+.
T Consensus 99 ~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e 176 (482)
T PRK04195 99 RKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE 176 (482)
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc
Confidence 5689999998752 2555544443 23445777775432 111 11 223578899999999888887766543
Q ss_pred CCCchhHHHHHHHHHHHhCCCch
Q 004707 73 NHCPEDFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 73 ~~~~~~~~~l~~~i~~~c~GlPL 95 (734)
...-+ .+....|++.++|-.-
T Consensus 177 gi~i~--~eaL~~Ia~~s~GDlR 197 (482)
T PRK04195 177 GIECD--DEALKEIAERSGGDLR 197 (482)
T ss_pred CCCCC--HHHHHHHHHHcCCCHH
Confidence 32111 2455677778887554
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=52.40 E-value=38 Score=39.56 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=48.3
Q ss_pred HHhHhccCCCCCCCcEEEE--EcCChhHHhh-c-CCCceEECCCCCHHHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHh
Q 004707 16 LEGLIGGLDQYGPGSRIVV--TTRDKGVLEN-F-GVEKIYRVNGLEFYEAFELFYYFAFKEN-HCPEDFKRDSRRVVKYA 90 (734)
Q Consensus 16 ~~~l~~~~~~~~~GSrIiv--TTR~~~v~~~-~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~-~~~~~~~~l~~~i~~~c 90 (734)
|+.+...+....+...|+| ||++...+.. . .-...+.+.+++.+|.++++.+.+-+.. ... .++.+.+.+++
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys 385 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYT 385 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCC
Confidence 4444444444445555655 6775432111 1 1123667899999999999998764321 111 34455566666
Q ss_pred CCCchHHHHHHhh
Q 004707 91 DGNPLVLKVLGSS 103 (734)
Q Consensus 91 ~GlPLal~vlgs~ 103 (734)
..-+-|+..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 6556677766555
No 137
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.26 E-value=63 Score=37.02 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=58.6
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+||++.. .+++.|...+.......++|.+|.+ ..+.... .-..++++++++.++..+.+.+.+-+.+ . .
T Consensus 120 ~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i-~ 197 (546)
T PRK14957 120 YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I-N 197 (546)
T ss_pred cEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C-C
Confidence 457999999755 4577777777655556666655544 3344221 2236899999999988777665442221 1 1
Q ss_pred hHHHHHHHHHHHhCCCc-hHHHHH
Q 004707 78 DFKRDSRRVVKYADGNP-LVLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlP-Lal~vl 100 (734)
--.+....+++.++|-+ -|+..+
T Consensus 198 ~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 198 SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11233456777888855 344443
No 138
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.22 E-value=35 Score=37.47 Aligned_cols=92 Identities=10% Similarity=0.082 Sum_probs=59.2
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEc-CChhHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTT-RDKGVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+++.. ++++.|...+....+.+.+|++| +-+.+.+... ...++++++++.++..+.+...+=+... .
T Consensus 128 ~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~ 205 (397)
T PRK14955 128 YRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--S 205 (397)
T ss_pred eEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--C
Confidence 447899999865 46888877776666677776665 4445543321 1247899999999888777665522111 0
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
--.+.+..++++++|.+-
T Consensus 206 i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 206 VDADALQLIGRKAQGSMR 223 (397)
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 113456678888999774
No 139
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.83 E-value=7.5 Score=23.46 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=6.6
Q ss_pred CCCcEEeeccCCCC
Q 004707 394 SSLEELDLSGNSFE 407 (734)
Q Consensus 394 ~~L~~L~Ls~n~l~ 407 (734)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555566555544
No 140
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=50.64 E-value=58 Score=34.53 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=58.6
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCC-hhHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRD-KGVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
++|+|+++... .-++|.+.+..-.+++.+|++|.+ ..++.... -...+.+..++.+++.+.+.... ..
T Consensus 116 V~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~---- 187 (319)
T PRK08769 116 VVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS---- 187 (319)
T ss_pred EEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC----
Confidence 67889998764 344555544444467777777765 44443322 23578899999999988876431 11
Q ss_pred HHHHHHHHHHhCCCchHHHHHH
Q 004707 80 KRDSRRVVKYADGNPLVLKVLG 101 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal~vlg 101 (734)
...+..++..++|.|+.+..+.
T Consensus 188 ~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHHHHHHHcCCCHHHHHHHh
Confidence 1225678999999998665554
No 141
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=50.64 E-value=54 Score=38.49 Aligned_cols=92 Identities=10% Similarity=0.061 Sum_probs=55.7
Q ss_pred EEEEEEeCCCChHH--HHhHhccCCCCCCCcEEEEEcCChh-HHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKDEQ--LEGLIGGLDQYGPGSRIVVTTRDKG-VLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~~~--~~~l~~~~~~~~~GSrIivTTR~~~-v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|||+|+.... .+.|...+..-....++|++|.+.+ +.... +-...++++.++.++..+.+.+.+=+.....
T Consensus 120 ~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i- 198 (709)
T PRK08691 120 YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY- 198 (709)
T ss_pred cEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-
Confidence 34788999987643 5555555543345667777776543 22111 1124678889999998888776653322111
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
-.+....|++.++|.+-
T Consensus 199 -d~eAL~~Ia~~A~GslR 215 (709)
T PRK08691 199 -EPPALQLLGRAAAGSMR 215 (709)
T ss_pred -CHHHHHHHHHHhCCCHH
Confidence 12345678888888774
No 142
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.51 E-value=7.3 Score=43.41 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=31.4
Q ss_pred CCCCccEEEeecCCCCCC---CccCCCCCCCcEEeeccC--CCCcccccccC--CCCCcEEeeecCCCCCC
Q 004707 369 GLSSLECLHLRDCAVTDI---PQEIGCLSSLEELDLSGN--SFESLPVSIKQ--LSQLSSLDLSDCNMLRS 432 (734)
Q Consensus 369 ~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n--~l~~lp~~l~~--l~~L~~L~L~~n~~l~~ 432 (734)
+.+.+..+.|++|++..+ ..-....|+|+.|+|++| .+...+ ++.+ ...|++|-+.||++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccc
Confidence 344555566666655532 222233466666677666 333222 2222 22456666666666543
No 143
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=50.28 E-value=38 Score=36.58 Aligned_cols=91 Identities=15% Similarity=0.276 Sum_probs=56.6
Q ss_pred CEEEEEEeCCCC--hHHHHhHhccCCCCCCCcEEEE--EcCChhHHhh---cCCCceEECCCCCHHHHHHHHHHhhcCCC
Q 004707 1 MKVLIVLDDVNK--DEQLEGLIGGLDQYGPGSRIVV--TTRDKGVLEN---FGVEKIYRVNGLEFYEAFELFYYFAFKEN 73 (734)
Q Consensus 1 kk~LiVLDDV~~--~~~~~~l~~~~~~~~~GSrIiv--TTR~~~v~~~---~~~~~~y~v~~L~~~~s~~Lf~~~af~~~ 73 (734)
+|.++.+|.|.. ..|-+.+.. ....|.-|+| ||.+..-.-. ..-..+|++++|+.+|-.++..+.+-...
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 588999999954 456666644 4568888887 6666432111 12236999999999999999988442211
Q ss_pred CCch-----hHHHHHHHHHHHhCCCc
Q 004707 74 HCPE-----DFKRDSRRVVKYADGNP 94 (734)
Q Consensus 74 ~~~~-----~~~~l~~~i~~~c~GlP 94 (734)
..-+ --++.-.-+++.+.|--
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchH
Confidence 1100 11234445677777753
No 144
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.78 E-value=64 Score=34.92 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=56.0
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEc-CChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTT-RDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-+||+|+++.. ..++.+........+...+|++| +.+.+.... ....+++.++++.++..+.+...+-+....-+
T Consensus 109 ~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~ 188 (367)
T PRK14970 109 YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE 188 (367)
T ss_pred cEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC
Confidence 347999999764 34677655544334455666555 333333221 22357999999999998888877754332111
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
.+....++++++|-+-
T Consensus 189 --~~al~~l~~~~~gdlr 204 (367)
T PRK14970 189 --DDALHIIAQKADGALR 204 (367)
T ss_pred --HHHHHHHHHhCCCCHH
Confidence 2455667777887554
No 145
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=48.80 E-value=81 Score=32.84 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=43.0
Q ss_pred EEEEeCCCCh-----------HHHHhHhccCCCCCCCcEEEEEcCChhHHhhcC--------CCceEECCCCCHHHHHHH
Q 004707 4 LIVLDDVNKD-----------EQLEGLIGGLDQYGPGSRIVVTTRDKGVLENFG--------VEKIYRVNGLEFYEAFEL 64 (734)
Q Consensus 4 LiVLDDV~~~-----------~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~--------~~~~y~v~~L~~~~s~~L 64 (734)
+|+||++... +.++.|.........+-+||.+|.....-..+. ....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 6789999732 335556555554455667777775433222111 245789999999999999
Q ss_pred HHHhh
Q 004707 65 FYYFA 69 (734)
Q Consensus 65 f~~~a 69 (734)
+.+.+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88776
No 146
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=48.09 E-value=1.2e+02 Score=33.24 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=48.3
Q ss_pred EEEEeCCCChH---HH-HhHhccCCC-CCCCcEEEEEcCC-hh--------HHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKDE---QL-EGLIGGLDQ-YGPGSRIVVTTRD-KG--------VLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~~---~~-~~l~~~~~~-~~~GSrIivTTR~-~~--------v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
+||||||+... .+ +.+...+.. ...|.+||||+.. .. +...+....+.++++++.++-.+++...+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 68999997531 11 222222211 1245567887753 11 22223333578999999999999988877
Q ss_pred cCCC-CCchhHHHHHHHHHHHhCCCc
Q 004707 70 FKEN-HCPEDFKRDSRRVVKYADGNP 94 (734)
Q Consensus 70 f~~~-~~~~~~~~l~~~i~~~c~GlP 94 (734)
-... ..+ .++...+++.+.|..
T Consensus 282 ~~~~~~l~---~e~l~~ia~~~~~~~ 304 (405)
T TIGR00362 282 EEEGLELP---DEVLEFIAKNIRSNV 304 (405)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCCH
Confidence 4322 112 244445555555544
No 147
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.73 E-value=62 Score=37.69 Aligned_cols=93 Identities=9% Similarity=0.045 Sum_probs=60.0
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcC-ChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTR-DKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR-~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
-++|||+|+.. +.++.|.+.+..-..+.++|.+|. ...|.... .-...|.++.++.++..+.+.+.+-++....
T Consensus 126 KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-- 203 (700)
T PRK12323 126 KVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-- 203 (700)
T ss_pred eEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--
Confidence 47899999876 457888777665445666555554 44454332 1135899999999999888876653322111
Q ss_pred HHHHHHHHHHHhCCCchHH
Q 004707 79 FKRDSRRVVKYADGNPLVL 97 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPLal 97 (734)
-.+..+.|++.++|.|...
T Consensus 204 d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 204 EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 1234467899999988633
No 148
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=47.27 E-value=79 Score=33.90 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=58.9
Q ss_pred EEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
.+|+|+++.. +..+.|.+.+..-.++..+|.+|.+ ..++... .-...+.+.+++.++..+.+.... . + +
T Consensus 135 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-~-~-- 207 (342)
T PRK06964 135 VVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-A-D-- 207 (342)
T ss_pred EEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C-C-h--
Confidence 5678999776 4477777777666678876666655 5555442 223689999999999998887642 1 1 1
Q ss_pred HHHHHHHHHHhCCCchHHHHHH
Q 004707 80 KRDSRRVVKYADGNPLVLKVLG 101 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal~vlg 101 (734)
...++..++|.|+.+..+.
T Consensus 208 ---~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 208 ---ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---HHHHHHHcCCCHHHHHHHH
Confidence 1235778999997554443
No 149
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=46.80 E-value=1.1e+02 Score=34.88 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=59.4
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+++.. +..++|...+....+..++|++|.+. .+.... .-...+++++++.++..+...+.+-+.....
T Consensus 118 ~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i- 196 (535)
T PRK08451 118 FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY- 196 (535)
T ss_pred eEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 347899999765 44677766665555677877777764 222111 1135899999999998888766553322211
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
-.+....+++.++|.+-
T Consensus 197 -~~~Al~~Ia~~s~GdlR 213 (535)
T PRK08451 197 -EPEALEILARSGNGSLR 213 (535)
T ss_pred -CHHHHHHHHHHcCCcHH
Confidence 13455678888888774
No 150
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=46.49 E-value=59 Score=37.61 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=43.6
Q ss_pred EEEEeCCCCh---HHHH-hHhccCCC-CCCCcEEEEEcCC---------hhHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKD---EQLE-GLIGGLDQ-YGPGSRIVVTTRD---------KGVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~---~~~~-~l~~~~~~-~~~GSrIivTTR~---------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
+|||||+... +.|+ .+...+.. ...|..|||||+. ..+...+...-+++++.++.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 6899999654 2232 12211111 2346678888875 2233344556699999999999999999887
Q ss_pred cC
Q 004707 70 FK 71 (734)
Q Consensus 70 f~ 71 (734)
-.
T Consensus 460 ~~ 461 (617)
T PRK14086 460 VQ 461 (617)
T ss_pred Hh
Confidence 53
No 151
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=46.26 E-value=47 Score=34.60 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=65.0
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCChhHHhhc--CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDKGVLENF--GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~--~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
.||||+.+.+. .|.+|......+..-+|.|.+|..-..+-.- .-...|.-++|.+++..+-+...|-+++..-+
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-- 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-- 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--
Confidence 47899998874 5999998888888888887777664332221 11246889999999998888888855443222
Q ss_pred HHHHHHHHHHhCCC-chHHHHHH
Q 004707 80 KRDSRRVVKYADGN-PLVLKVLG 101 (734)
Q Consensus 80 ~~l~~~i~~~c~Gl-PLal~vlg 101 (734)
.+.-+.|+++++|- --|+.++-
T Consensus 210 ~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 210 DDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 23445788888874 34544443
No 152
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.04 E-value=92 Score=36.42 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=58.8
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChh-HHhh-cCCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKG-VLEN-FGVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~-~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+|+.. ...+.|...+..-.++.++|++|.+.+ +... ..-...+++++++.++..+.+.+.+-+....
T Consensus 119 ~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-- 196 (702)
T PRK14960 119 FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-- 196 (702)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--
Confidence 346889999875 456777666655456678888887643 2211 1223689999999999888887666432211
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
--.+....|++.++|-+-
T Consensus 197 id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 197 ADQDAIWQIAESAQGSLR 214 (702)
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 112344567888888764
No 153
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.72 E-value=98 Score=35.99 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=60.4
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCC-Cc
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENH-CP 76 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~-~~ 76 (734)
+-+||+|+++.. +..+.|...+..-.+...+|++|.+ ..+.... .-...++++.++..+..+.+.+.+-+... ..
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~ 200 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE 200 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 447899999755 5577777666555566777766644 3444322 12357889999999888888776644321 22
Q ss_pred hhHHHHHHHHHHHhCCCchHH
Q 004707 77 EDFKRDSRRVVKYADGNPLVL 97 (734)
Q Consensus 77 ~~~~~l~~~i~~~c~GlPLal 97 (734)
.+....+++.++|.+-.+
T Consensus 201 ---~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 201 ---PGALEAIARAATGSMRDA 218 (585)
T ss_pred ---HHHHHHHHHHcCCCHHHH
Confidence 245667888899987543
No 154
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.33 E-value=66 Score=35.31 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=48.1
Q ss_pred EEEEEeCCCCh-------------H---HHHhHhccCCCC--CCCcEEEEEcCChhHHh-----hcCCCceEECCCCCHH
Q 004707 3 VLIVLDDVNKD-------------E---QLEGLIGGLDQY--GPGSRIVVTTRDKGVLE-----NFGVEKIYRVNGLEFY 59 (734)
Q Consensus 3 ~LiVLDDV~~~-------------~---~~~~l~~~~~~~--~~GSrIivTTR~~~v~~-----~~~~~~~y~v~~L~~~ 59 (734)
.+|+||+++.. + .+..+....+.+ ..+-+||.||.....+. .-..+..++++.++.+
T Consensus 240 ~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~ 319 (398)
T PTZ00454 240 SIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 319 (398)
T ss_pred eEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHH
Confidence 58999998643 0 122233323222 23567888888544432 2245678999999999
Q ss_pred HHHHHHHHhhcCCC-CCchhHHHHHH
Q 004707 60 EAFELFYYFAFKEN-HCPEDFKRDSR 84 (734)
Q Consensus 60 ~s~~Lf~~~af~~~-~~~~~~~~l~~ 84 (734)
+-.++|..+.-+.. .+..++.+++.
T Consensus 320 ~R~~Il~~~~~~~~l~~dvd~~~la~ 345 (398)
T PTZ00454 320 QKRLIFQTITSKMNLSEEVDLEDFVS 345 (398)
T ss_pred HHHHHHHHHHhcCCCCcccCHHHHHH
Confidence 98888886653322 22234555443
No 155
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=43.10 E-value=1.2e+02 Score=36.75 Aligned_cols=90 Identities=9% Similarity=0.063 Sum_probs=57.0
Q ss_pred EEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
++|||+++.. +..+.|.+.+..--....+|++|.+ ..|.... .-..+|+++.++.++..+.+.+..=+..... -
T Consensus 123 V~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d 200 (824)
T PRK07764 123 IFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--E 200 (824)
T ss_pred EEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--C
Confidence 5779999776 4477777777666667777765543 4455432 2246899999999888877765442222111 1
Q ss_pred HHHHHHHHHHhCCCch
Q 004707 80 KRDSRRVVKYADGNPL 95 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPL 95 (734)
.+....|++.++|-+.
T Consensus 201 ~eal~lLa~~sgGdlR 216 (824)
T PRK07764 201 PGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 2334567888888773
No 156
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.65 E-value=95 Score=37.62 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|||+++.. +..+.|...+.......|+|.+|.+ ..+.... .-..+|++++|+.++..+.+.+.+-... ..
T Consensus 120 ~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~ 197 (944)
T PRK14949 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LP 197 (944)
T ss_pred cEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CC
Confidence 457999999765 5678877776655566777766655 4444332 1136899999999999988876553221 11
Q ss_pred hHHHHHHHHHHHhCCCch-HHHHH
Q 004707 78 DFKRDSRRVVKYADGNPL-VLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL-al~vl 100 (734)
--.+..+.|++.++|.|- |+..+
T Consensus 198 ~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 198 FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123456778999999874 54444
No 157
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=42.21 E-value=42 Score=40.34 Aligned_cols=102 Identities=9% Similarity=0.026 Sum_probs=56.6
Q ss_pred EEEEEeCCCChH--HHHhHhccCCC-CCCCcEEEE--EcCC--------hhHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 3 VLIVLDDVNKDE--QLEGLIGGLDQ-YGPGSRIVV--TTRD--------KGVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 3 ~LiVLDDV~~~~--~~~~l~~~~~~-~~~GSrIiv--TTR~--------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
.+||||||+... +=+.|..-+.| ...+++|+| +|.+ ..|...++.. .+..++.+.++-.+++...|
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~e-eIvF~PYTaEQL~dILk~RA 949 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFG-RLVFSPYKGDEIEKIIKERL 949 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccc-cccCCCCCHHHHHHHHHHHH
Confidence 589999998653 11223222222 235677666 3332 2222233322 34568999999999999887
Q ss_pred cCC-CC-CchhHHHHHHHHHHHhCCCchHHHHHHhhcC
Q 004707 70 FKE-NH-CPEDFKRDSRRVVKYADGNPLVLKVLGSSLK 105 (734)
Q Consensus 70 f~~-~~-~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~ 105 (734)
-.. .. .++..+-+|+.++...|-.-.||.++-.+..
T Consensus 950 e~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 950 ENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred HhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 432 12 2333445555555444556677776655543
No 158
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=41.33 E-value=1.7e+02 Score=32.75 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=58.0
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-+||+|+++.. +..+.|...+..-.++..+|++|.+ +.+.... .-...++++.+++++..+.+...+=+.+..-
T Consensus 122 ~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i- 200 (451)
T PRK06305 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET- 200 (451)
T ss_pred CEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 346899999765 3456666655544456667766643 4443322 2235789999999998887776553222111
Q ss_pred hHHHHHHHHHHHhCCCc-hHHHHH
Q 004707 78 DFKRDSRRVVKYADGNP-LVLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlP-Lal~vl 100 (734)
-.+....++++++|.+ .|+..+
T Consensus 201 -~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 201 -SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1245567888888865 344333
No 159
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=39.84 E-value=1.2e+02 Score=34.03 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=50.8
Q ss_pred EEEEeCCCCh---HH-HHhHhccCCC-CCCCcEEEEEcCCh---------hHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKD---EQ-LEGLIGGLDQ-YGPGSRIVVTTRDK---------GVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~---~~-~~~l~~~~~~-~~~GSrIivTTR~~---------~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
+||||||+.. +. -+.+...+.. ...|..|||||... .+...+....++++++++.++-.+++..++
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 7899999643 11 1222221111 12355688877642 122334444689999999999999999887
Q ss_pred cCCC-CCchhHHHHHHHHHHHhCCCc
Q 004707 70 FKEN-HCPEDFKRDSRRVVKYADGNP 94 (734)
Q Consensus 70 f~~~-~~~~~~~~l~~~i~~~c~GlP 94 (734)
-... ..++ ++..-|++.+.|..
T Consensus 294 ~~~~~~l~~---e~l~~ia~~~~~~~ 316 (450)
T PRK00149 294 EEEGIDLPD---EVLEFIAKNITSNV 316 (450)
T ss_pred HHcCCCCCH---HHHHHHHcCcCCCH
Confidence 4322 2222 34455666666654
No 160
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.59 E-value=1.1e+02 Score=34.44 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=59.8
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEc-CChhHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTT-RDKGVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+|+.. +++++|...+..--...++|.+| .-..+..... -...|.+++++.++..+.+.+.+-+.....
T Consensus 122 ~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~- 200 (484)
T PRK14956 122 YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY- 200 (484)
T ss_pred CEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-
Confidence 347899999765 45888877665433455555444 4444433321 135799999999988887776654322111
Q ss_pred hHHHHHHHHHHHhCCCch-HHHHH
Q 004707 78 DFKRDSRRVVKYADGNPL-VLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL-al~vl 100 (734)
-.+....|++.++|-+- |+..+
T Consensus 201 -e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 201 -DQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred -CHHHHHHHHHHcCChHHHHHHHH
Confidence 13455678889999873 43333
No 161
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=39.49 E-value=34 Score=30.50 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=24.7
Q ss_pred EEEEEEeCCCCh-----HHHHhHhccCCCC---CCCcEEEEEcCChh
Q 004707 2 KVLIVLDDVNKD-----EQLEGLIGGLDQY---GPGSRIVVTTRDKG 40 (734)
Q Consensus 2 k~LiVLDDV~~~-----~~~~~l~~~~~~~---~~GSrIivTTR~~~ 40 (734)
..+||+||++.. +.+..+....... ..+.+||+||....
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 468999999864 2233333333322 46788999988754
No 162
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.44 E-value=90 Score=36.45 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=58.2
Q ss_pred EEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEc-CChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTT-RDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
++|+|+++.. +.++.|...+..-..++.+|++| +.+.+.... .-..++++++++.++..+.+...+-+.....+
T Consensus 124 VvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~-- 201 (614)
T PRK14971 124 IYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE-- 201 (614)
T ss_pred EEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 6789999775 34777777666555677766555 545555442 22468999999999998888776643321111
Q ss_pred HHHHHHHHHHhCCCch
Q 004707 80 KRDSRRVVKYADGNPL 95 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPL 95 (734)
.+....+++.++|-.-
T Consensus 202 ~~al~~La~~s~gdlr 217 (614)
T PRK14971 202 PEALNVIAQKADGGMR 217 (614)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 2345677788888653
No 163
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=38.96 E-value=98 Score=35.84 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=58.4
Q ss_pred EEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcC-ChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCC-CCchh
Q 004707 4 LIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTR-DKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKEN-HCPED 78 (734)
Q Consensus 4 LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR-~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~-~~~~~ 78 (734)
++|+|+++.. ..++.|...+..-.+...+|++|. -..+.... .-...+++++++.++....+...+-+.. ..+
T Consensus 122 VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-- 199 (605)
T PRK05896 122 VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-- 199 (605)
T ss_pred EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 4899999774 457777665554445666665554 34443321 2235789999999998888776653322 122
Q ss_pred HHHHHHHHHHHhCCCc-hHHHHHH
Q 004707 79 FKRDSRRVVKYADGNP-LVLKVLG 101 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlP-Lal~vlg 101 (734)
.+.+..+++.++|-+ .|+..+-
T Consensus 200 -~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 200 -DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred -HHHHHHHHHHcCCcHHHHHHHHH
Confidence 234567788888855 4444443
No 164
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.62 E-value=24 Score=21.77 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=7.5
Q ss_pred CCCcEEEcCCCCCCC
Q 004707 346 NVLRYLWFPRCRNLV 360 (734)
Q Consensus 346 ~~L~~L~l~~~~~l~ 360 (734)
++|+.|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 345555555555443
No 165
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=36.71 E-value=25 Score=22.24 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=8.8
Q ss_pred CCCcEEeeccCCCC
Q 004707 394 SSLEELDLSGNSFE 407 (734)
Q Consensus 394 ~~L~~L~Ls~n~l~ 407 (734)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 166
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=36.03 E-value=37 Score=31.95 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=28.2
Q ss_pred EEEEeCCCChH-----HHHhHhccCCCCCCCcEEEEEcCChh--HHhhcCCCceEECCC
Q 004707 4 LIVLDDVNKDE-----QLEGLIGGLDQYGPGSRIVVTTRDKG--VLENFGVEKIYRVNG 55 (734)
Q Consensus 4 LiVLDDV~~~~-----~~~~l~~~~~~~~~GSrIivTTR~~~--v~~~~~~~~~y~v~~ 55 (734)
|||||++.-.- ..+.+...+...-++.-||+|.|+.. +... .|.+.+++.
T Consensus 98 LlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~--AD~VTEm~~ 154 (159)
T cd00561 98 LVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA--ADLVTEMRE 154 (159)
T ss_pred EEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh--Cceeeecce
Confidence 79999995431 12233332333335668999999943 3332 355555554
No 167
>PRK04132 replication factor C small subunit; Provisional
Probab=35.71 E-value=1.9e+02 Score=35.03 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=60.7
Q ss_pred EEEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
-++|||+++... +.++|...........++|.+|.+. .+.... .-..++++++++.++-.+.+.+.+-+..-.-+
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~- 710 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT- 710 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC-
Confidence 589999998874 5777776666555667777766654 333222 22468999999998888877765543221111
Q ss_pred HHHHHHHHHHHhCCCch
Q 004707 79 FKRDSRRVVKYADGNPL 95 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPL 95 (734)
.+....+++.|+|-+-
T Consensus 711 -~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 711 -EEGLQAILYIAEGDMR 726 (846)
T ss_pred -HHHHHHHHHHcCCCHH
Confidence 3456788899999874
No 168
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=35.70 E-value=1.5e+02 Score=31.58 Aligned_cols=87 Identities=10% Similarity=0.149 Sum_probs=58.1
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCCh-hHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
.+|+|+++.+. ...+|.+.+..-.++..+|.+|.+. .++.... -...+.+.+++.+++.+.+...+- . . .
T Consensus 110 V~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~--~-~-~-- 183 (325)
T PRK06871 110 VVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS--A-E-I-- 183 (325)
T ss_pred EEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--c-C-h--
Confidence 46789998764 4666666665555677777777664 5554422 235899999999999988876541 1 1 1
Q ss_pred HHHHHHHHHHhCCCchHH
Q 004707 80 KRDSRRVVKYADGNPLVL 97 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal 97 (734)
..+...+..++|.|+.+
T Consensus 184 -~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 184 -SEILTALRINYGRPLLA 200 (325)
T ss_pred -HHHHHHHHHcCCCHHHH
Confidence 12456788999999643
No 169
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.59 E-value=1.5e+02 Score=33.50 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=59.1
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcC-ChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTR-DKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR-~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
=++|+|+|+.. +..+.|...+..-.+..++|++|. .+.+.... .-...++++.++.++..+.+.+.+-+....-
T Consensus 118 KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-- 195 (491)
T PRK14964 118 KVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-- 195 (491)
T ss_pred eEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--
Confidence 36899999765 347777776665556777776664 34554432 2236789999999998888887775433211
Q ss_pred HHHHHHHHHHHhCCCch
Q 004707 79 FKRDSRRVVKYADGNPL 95 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPL 95 (734)
-.+....|++.++|-+-
T Consensus 196 ~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 196 DEESLKLIAENSSGSMR 212 (491)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 12334567788887664
No 170
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.49 E-value=2e+02 Score=33.63 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=57.9
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
-++|||+|+.. +.++.|...+..--...++|++|.+ ..+.... .-...++++.++.++..+.+.+.+-+.....+
T Consensus 126 KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie- 204 (618)
T PRK14951 126 KVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE- 204 (618)
T ss_pred eEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 36899999875 4577777766554456666665544 4443321 22368999999999988888766543222111
Q ss_pred HHHHHHHHHHHhCCCch
Q 004707 79 FKRDSRRVVKYADGNPL 95 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPL 95 (734)
.+....+++.++|-+-
T Consensus 205 -~~AL~~La~~s~GslR 220 (618)
T PRK14951 205 -PQALRLLARAARGSMR 220 (618)
T ss_pred -HHHHHHHHHHcCCCHH
Confidence 2345677788888764
No 171
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.35 E-value=22 Score=39.79 Aligned_cols=75 Identities=28% Similarity=0.296 Sum_probs=49.6
Q ss_pred CCCCCcEEeeccCCCCccc---ccccCCCCCcEEeeecCCC-CC---CCCCC-CCCCceEEecCCCCCCCCC--------
Q 004707 392 CLSSLEELDLSGNSFESLP---VSIKQLSQLSSLDLSDCNM-LR---SLPEL-PSCLGFLNLSGCNMLQSLP-------- 455 (734)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~n~~-l~---~lp~~-~~~L~~L~Ls~n~~l~~lp-------- 455 (734)
+.+.+..++|++|++..+. .--...|+|+.|+|++|.. +. .++.. ...|++|-+.||++.....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 4677888999999887443 2235678999999999922 11 12221 2358899999998865433
Q ss_pred --CCCcCCceEec
Q 004707 456 --ELPLRLRRLRA 466 (734)
Q Consensus 456 --~l~~~L~~L~l 466 (734)
+.++.|..||-
T Consensus 296 i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 296 IRELFPKLLRLDG 308 (585)
T ss_pred HHHhcchheeecC
Confidence 34566666653
No 172
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=34.96 E-value=1.4e+02 Score=34.77 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=59.0
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEc-CChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTT-RDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
+||+|+++... ..+.|...+..-.++.++|++| .-..+.... .-...++++.++.++..+.+.+.+-+....- -
T Consensus 135 VvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~ 212 (598)
T PRK09111 135 VYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--E 212 (598)
T ss_pred EEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--C
Confidence 58999997654 4667766665555677776555 444444332 1235899999999999888877664322111 1
Q ss_pred HHHHHHHHHHhCCCchHH
Q 004707 80 KRDSRRVVKYADGNPLVL 97 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal 97 (734)
.+....+++.++|-+.-+
T Consensus 213 ~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 213 DEALALIARAAEGSVRDG 230 (598)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 245567888888887533
No 173
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.95 E-value=95 Score=34.93 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=51.8
Q ss_pred EEEEeCCCChHHHHhH---------------hccCCCCCCCcEEEEEcCChhHHhhcCC----CceEECCCCCH-HHHHH
Q 004707 4 LIVLDDVNKDEQLEGL---------------IGGLDQYGPGSRIVVTTRDKGVLENFGV----EKIYRVNGLEF-YEAFE 63 (734)
Q Consensus 4 LiVLDDV~~~~~~~~l---------------~~~~~~~~~GSrIivTTR~~~v~~~~~~----~~~y~v~~L~~-~~s~~ 63 (734)
.||+||+...-+|-.+ ....|..|..==|+-||....|++.|++ +..|.|+.++. ++..+
T Consensus 601 iivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred EEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHH
Confidence 5899999766544332 2222222222336668999999999986 35899999987 77777
Q ss_pred HHHHhh-cCCCCCchhHHHHHHHHHHHh
Q 004707 64 LFYYFA-FKENHCPEDFKRDSRRVVKYA 90 (734)
Q Consensus 64 Lf~~~a-f~~~~~~~~~~~l~~~i~~~c 90 (734)
..+..- |.++ +..-.+.+...+|
T Consensus 681 vl~~~n~fsd~----~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 681 VLEELNIFSDD----EVRAIAEQLLSKK 704 (744)
T ss_pred HHHHccCCCcc----hhHHHHHHHhccc
Confidence 776544 5443 2334444444444
No 174
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.92 E-value=1.5e+02 Score=33.94 Aligned_cols=92 Identities=10% Similarity=0.043 Sum_probs=56.5
Q ss_pred EEEEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+++... ..+.|...+..-....++|.+|.+. .+.... .-...++++.++.++..+.+.+.+-+....
T Consensus 120 ~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-- 197 (527)
T PRK14969 120 FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-- 197 (527)
T ss_pred ceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--
Confidence 3478999998764 4677766666554566777666553 333211 112578999999998887776554322211
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
--.+....+++.++|.+-
T Consensus 198 ~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 198 FDATALQLLARAAAGSMR 215 (527)
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 112344667888888764
No 175
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.56 E-value=1.5e+02 Score=34.68 Aligned_cols=89 Identities=10% Similarity=0.157 Sum_probs=56.4
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEc-CChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCC-CCchh
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTT-RDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKEN-HCPED 78 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~-~~~~~ 78 (734)
++|+||++... ..+.|...+..-.+.+.+|++| +-+.+.... ....+++++.++.++....+...+-+.. ...
T Consensus 130 VvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~-- 207 (620)
T PRK14954 130 VYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID-- 207 (620)
T ss_pred EEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 68899997763 4777777666544566665544 445554432 2346899999999988877765543222 122
Q ss_pred HHHHHHHHHHHhCCCch
Q 004707 79 FKRDSRRVVKYADGNPL 95 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPL 95 (734)
.+.+..+++.++|-.-
T Consensus 208 -~eal~~La~~s~Gdlr 223 (620)
T PRK14954 208 -ADALQLIARKAQGSMR 223 (620)
T ss_pred -HHHHHHHHHHhCCCHH
Confidence 2445678888888543
No 176
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=32.03 E-value=1.5e+02 Score=34.85 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=60.8
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|||+|+.. +..+.|...+..-....++|.+|.+ ..+.... .-...|+++.++.++..+.+.+.+-......
T Consensus 120 ~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~- 198 (647)
T PRK07994 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF- 198 (647)
T ss_pred CEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 347899999765 4577776666554456666665555 4443221 1236899999999999888876552222111
Q ss_pred hHHHHHHHHHHHhCCCch-HHHHH
Q 004707 78 DFKRDSRRVVKYADGNPL-VLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL-al~vl 100 (734)
-.+..+.|++.++|.+- |+..+
T Consensus 199 -e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 199 -EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred -CHHHHHHHHHHcCCCHHHHHHHH
Confidence 12344678889999775 44443
No 177
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=31.38 E-value=59 Score=36.13 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=33.0
Q ss_pred CCcEEEEEcCChhHHhh-----cCCCceEECCCCCHHHHHHHHHHhhcC
Q 004707 28 PGSRIVVTTRDKGVLEN-----FGVEKIYRVNGLEFYEAFELFYYFAFK 71 (734)
Q Consensus 28 ~GSrIivTTR~~~v~~~-----~~~~~~y~v~~L~~~~s~~Lf~~~af~ 71 (734)
.+-+||.||.....+.. -..+..++++.++.++..++|..++-+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 35678888886554433 134678999999999999999988744
No 178
>COG3903 Predicted ATPase [General function prediction only]
Probab=30.58 E-value=16 Score=39.51 Aligned_cols=180 Identities=23% Similarity=0.298 Sum_probs=105.7
Q ss_pred CEEEEEEeCCCChHH-HHhHhccCCCCCCCcEEEEEcCChhHHhhcCCCceEECCCCCHH-HHHHHHHHhhcCCC---CC
Q 004707 1 MKVLIVLDDVNKDEQ-LEGLIGGLDQYGPGSRIVVTTRDKGVLENFGVEKIYRVNGLEFY-EAFELFYYFAFKEN---HC 75 (734)
Q Consensus 1 kk~LiVLDDV~~~~~-~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~~~~~y~v~~L~~~-~s~~Lf~~~af~~~---~~ 75 (734)
+|.++|+||--+... -..+...+....+.=+|+.|+|+.... .-+.++.++.|+.. ++-++|.-.|-.-. -.
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 355677777543321 112222222233455688888875332 34678889999755 79999887663210 11
Q ss_pred chhHHHHHHHHHHHhCCCchHHHHHHhhcC--Ccc--------cHHHHHHH--hhhhcCCCchhHHHHHHhhcccCChhh
Q 004707 76 PEDFKRDSRRVVKYADGNPLVLKVLGSSLK--RKS--------HWGNVLDD--LNRICESDIHDIHDILKISFNELMPKM 143 (734)
Q Consensus 76 ~~~~~~l~~~i~~~c~GlPLal~vlgs~L~--~~~--------~W~~~l~~--l~~~~~~~i~~i~~~L~~Syd~L~~~~ 143 (734)
...-.....+|.+...|.||||.-.++..+ ... .|...-.. +..... ......+..||-=|...+
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~---qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQ---QTLRASLDWSYALLTGWE 241 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHH---HhccchhhhhhHhhhhHH
Confidence 223345567888889999999999888887 222 22211110 000111 123677888999999999
Q ss_pred hhhhhhhcccccCCChhHHHHHHHh--------hccchhHHHhhcCCceee
Q 004707 144 KSIFLDIACFFEGEDKDFVTRILDD--------YGSYGLEVLIDKSLITVS 186 (734)
Q Consensus 144 k~~fl~ia~f~~~~~~~~~~~~l~~--------~~~~~i~~L~~ksli~~~ 186 (734)
+--|--++.|.-+++.+.....--+ +....+-.+++|+++...
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 9889888888777666532221110 012345567888887654
No 179
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.34 E-value=2.9e+02 Score=32.38 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=57.9
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCC-CCch
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKEN-HCPE 77 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~-~~~~ 77 (734)
-+||+|+++.. +.++.|...+..--....+|.+|.+ ..++... .....++++.++.++..+.+.+.+-+.. ...
T Consensus 123 KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is- 201 (620)
T PRK14948 123 KVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE- 201 (620)
T ss_pred eEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC-
Confidence 46899999865 4577777766644445555555544 3444332 2235788889999888877776654322 111
Q ss_pred hHHHHHHHHHHHhCCCchHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLK 98 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~ 98 (734)
.+....++++++|.+..+.
T Consensus 202 --~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 202 --PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred --HHHHHHHHHHcCCCHHHHH
Confidence 2346688888999775443
No 180
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=29.51 E-value=2.2e+02 Score=29.85 Aligned_cols=90 Identities=10% Similarity=0.127 Sum_probs=57.1
Q ss_pred EEEEeCCCChHH--HHhHhccCCCCCCCcEEEEEc-CChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDEQ--LEGLIGGLDQYGPGSRIVVTT-RDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~~--~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
++|+||++...+ .++|...+..-.+++.+|++| +-+.++... .-..+++++++++++..+.+.... .++
T Consensus 93 vvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~-----~~~-- 165 (299)
T PRK07132 93 ILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN-----KEK-- 165 (299)
T ss_pred EEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC-----CCh--
Confidence 577888876643 666776666666788777655 445555442 335689999999999887765431 222
Q ss_pred HHHHHHHHHHhCCCchHHHHHH
Q 004707 80 KRDSRRVVKYADGNPLVLKVLG 101 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal~vlg 101 (734)
+.++.++..++|.--|++.+.
T Consensus 166 -~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 166 -EYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred -hHHHHHHHHcCCHHHHHHHHh
Confidence 335566666776334555543
No 181
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.44 E-value=3.6e+02 Score=30.52 Aligned_cols=93 Identities=10% Similarity=0.082 Sum_probs=55.9
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+++.. +..+.|...+....+...+|++|.+ ..+.... .....+++.+++.++..+.+...+=......
T Consensus 120 ~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i- 198 (486)
T PRK14953 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY- 198 (486)
T ss_pred eeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-
Confidence 447899999765 3466676666554456666665543 3333221 1235789999999988887776553322111
Q ss_pred hHHHHHHHHHHHhCCCchH
Q 004707 78 DFKRDSRRVVKYADGNPLV 96 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLa 96 (734)
-.+....+++.++|.+-.
T Consensus 199 -d~~al~~La~~s~G~lr~ 216 (486)
T PRK14953 199 -EEKALDLLAQASEGGMRD 216 (486)
T ss_pred -CHHHHHHHHHHcCCCHHH
Confidence 123445677788886653
No 182
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=29.20 E-value=3.5e+02 Score=31.30 Aligned_cols=91 Identities=8% Similarity=0.138 Sum_probs=57.9
Q ss_pred EEEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
=++|+|+++... +++.|...+..-.+...+|.+|.+ +.+.... .-...++.++++.++..+.+...+.+....-
T Consensus 121 KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i-- 198 (563)
T PRK06647 121 RVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY-- 198 (563)
T ss_pred EEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC--
Confidence 368899997654 477787776655566677666644 4443332 1234789999999988888877665433221
Q ss_pred HHHHHHHHHHHhCCCch
Q 004707 79 FKRDSRRVVKYADGNPL 95 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPL 95 (734)
-.+....+++.++|-+-
T Consensus 199 d~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 199 EDEALKWIAYKSTGSVR 215 (563)
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 12445567778888764
No 183
>PF13730 HTH_36: Helix-turn-helix domain
Probab=28.74 E-value=56 Score=24.15 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=31.4
Q ss_pred cCChhhhhhhhhhcccccCC--ChhHHHHHHHhhc------cchhHHHhhcCCc
Q 004707 138 ELMPKMKSIFLDIACFFEGE--DKDFVTRILDDYG------SYGLEVLIDKSLI 183 (734)
Q Consensus 138 ~L~~~~k~~fl~ia~f~~~~--~~~~~~~~l~~~~------~~~i~~L~~ksli 183 (734)
+|+..++.++.+++-+.++. .......+-+.+| ...+++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 57778888888887775432 2233455555555 6788899998875
No 184
>CHL00181 cbbX CbbX; Provisional
Probab=28.58 E-value=3.4e+02 Score=28.30 Aligned_cols=68 Identities=7% Similarity=0.063 Sum_probs=44.7
Q ss_pred EEEEeCCCCh-----------HHHHhHhccCCCCCCCcEEEEEcCChhHHhhc--------CCCceEECCCCCHHHHHHH
Q 004707 4 LIVLDDVNKD-----------EQLEGLIGGLDQYGPGSRIVVTTRDKGVLENF--------GVEKIYRVNGLEFYEAFEL 64 (734)
Q Consensus 4 LiVLDDV~~~-----------~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~--------~~~~~y~v~~L~~~~s~~L 64 (734)
+|+||+++.. ++.+.|.........+-+||.++..+.+.... ....+++.++++.+|-.++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 6889999642 34455555554444556777887654432211 2356889999999999999
Q ss_pred HHHhhcC
Q 004707 65 FYYFAFK 71 (734)
Q Consensus 65 f~~~af~ 71 (734)
+...+-+
T Consensus 205 ~~~~l~~ 211 (287)
T CHL00181 205 AKIMLEE 211 (287)
T ss_pred HHHHHHH
Confidence 8877743
No 185
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=27.42 E-value=2.8e+02 Score=30.45 Aligned_cols=68 Identities=12% Similarity=0.158 Sum_probs=44.3
Q ss_pred EEEEeCCCChH---HHH-hHhccCC-CCCCCcEEEEEcCC---------hhHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKDE---QLE-GLIGGLD-QYGPGSRIVVTTRD---------KGVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~~---~~~-~l~~~~~-~~~~GSrIivTTR~---------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
++++||++-.. .|+ .+...+. ....|-.||+|++. ..+...++..-++++.+++.+....+..++|
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 68899995532 222 2222222 12345589998843 3444455566799999999999999998877
Q ss_pred cC
Q 004707 70 FK 71 (734)
Q Consensus 70 f~ 71 (734)
-.
T Consensus 258 ~~ 259 (408)
T COG0593 258 ED 259 (408)
T ss_pred Hh
Confidence 53
No 186
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=26.60 E-value=2.3e+02 Score=31.63 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=48.2
Q ss_pred EEEEeCCCCh---HHH-HhHhccCCC-CCCCcEEEEEcC-ChhHHh--------hcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKD---EQL-EGLIGGLDQ-YGPGSRIVVTTR-DKGVLE--------NFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~---~~~-~~l~~~~~~-~~~GSrIivTTR-~~~v~~--------~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
+|||||++.. ..+ +.+...+.. ...|..||+||+ ...-+. .+...-+.++++++.++-.+++.+++
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 6899999743 111 122111111 123557888874 322221 22334588999999999999998887
Q ss_pred cCC-CCCchhHHHHHHHHHHHhCCC
Q 004707 70 FKE-NHCPEDFKRDSRRVVKYADGN 93 (734)
Q Consensus 70 f~~-~~~~~~~~~l~~~i~~~c~Gl 93 (734)
-.. -..+ .++..-|++++.|.
T Consensus 277 ~~~~~~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 277 EIEHGELP---EEVLNFVAENVDDN 298 (440)
T ss_pred HhcCCCCC---HHHHHHHHhccccC
Confidence 432 2222 23444555555554
No 187
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=25.91 E-value=1.5e+02 Score=30.19 Aligned_cols=65 Identities=9% Similarity=0.160 Sum_probs=40.2
Q ss_pred EEEEeCCCC----------hHHHHhHhccCCCCCCCcEEEEEcCChhH----------HhhcCCCceEECCCCCHHHHHH
Q 004707 4 LIVLDDVNK----------DEQLEGLIGGLDQYGPGSRIVVTTRDKGV----------LENFGVEKIYRVNGLEFYEAFE 63 (734)
Q Consensus 4 LiVLDDV~~----------~~~~~~l~~~~~~~~~GSrIivTTR~~~v----------~~~~~~~~~y~v~~L~~~~s~~ 63 (734)
+|++|+++. .++.+.+..........-++|+++..+.. ... ....++++.++.+|-.+
T Consensus 108 VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 108 VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELME 185 (261)
T ss_pred EEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHH
Confidence 678999975 33566666655433333355555543322 222 23467888899998888
Q ss_pred HHHHhhc
Q 004707 64 LFYYFAF 70 (734)
Q Consensus 64 Lf~~~af 70 (734)
++.+.+-
T Consensus 186 Il~~~~~ 192 (261)
T TIGR02881 186 IAERMVK 192 (261)
T ss_pred HHHHHHH
Confidence 8886664
No 188
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=25.53 E-value=3.1e+02 Score=32.67 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=59.6
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEE-EcCChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVV-TTRDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIiv-TTR~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
-++|+|+|+.. +.+++|...+..-.+...+|. ||+-..+.... .-...+++++++.++..+.+...+-+.....
T Consensus 120 KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-- 197 (725)
T PRK07133 120 KIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-- 197 (725)
T ss_pred EEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC--
Confidence 36789999765 457777776665445556554 44445554332 2235899999999998888776553322111
Q ss_pred HHHHHHHHHHHhCCCc-hHHHHHH
Q 004707 79 FKRDSRRVVKYADGNP-LVLKVLG 101 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlP-Lal~vlg 101 (734)
-.+.+..+++.++|-+ .|+..+.
T Consensus 198 d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 198 EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1234567888888865 4444433
No 189
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=25.49 E-value=1.3e+02 Score=33.62 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=40.5
Q ss_pred EEEEeCCCChHH----HHhHhccCCC-CCCCcEEEEEcCC---------hhHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 4 LIVLDDVNKDEQ----LEGLIGGLDQ-YGPGSRIVVTTRD---------KGVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 4 LiVLDDV~~~~~----~~~l~~~~~~-~~~GSrIivTTR~---------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
++++||+..... -+.+...+.. ...|..||+||.. +.+...+...-++++++++.++-.+++.+++
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 688999965421 1122221110 1245678888854 1223333444689999999999999998877
Q ss_pred c
Q 004707 70 F 70 (734)
Q Consensus 70 f 70 (734)
-
T Consensus 285 ~ 285 (445)
T PRK12422 285 E 285 (445)
T ss_pred H
Confidence 4
No 190
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=24.85 E-value=2.4e+02 Score=30.18 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=58.5
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCC-hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRD-KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~-~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
.+|+|+++.+. .-+.|.+.+..-.++..+|.+|.+ ..++... .-...+.+.+++.+++.+...... + .+
T Consensus 111 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~~--- 183 (334)
T PRK07993 111 VVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---MS--- 183 (334)
T ss_pred EEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---CC---
Confidence 57889887764 366666666555567777777766 4455442 223478999999999988775431 1 11
Q ss_pred HHHHHHHHHHhCCCchHHHHH
Q 004707 80 KRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal~vl 100 (734)
.+.+..++..++|.|.....+
T Consensus 184 ~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 184 QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 123567899999999644333
No 191
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.91 E-value=2.7e+02 Score=31.04 Aligned_cols=223 Identities=19% Similarity=0.183 Sum_probs=114.9
Q ss_pred EEEEEEeCCCChHH--HHhHhccCCC-CCCCcEEEEEcCCh------hHHhhcCC-----CceEECCCCCHHHHHHHHHH
Q 004707 2 KVLIVLDDVNKDEQ--LEGLIGGLDQ-YGPGSRIVVTTRDK------GVLENFGV-----EKIYRVNGLEFYEAFELFYY 67 (734)
Q Consensus 2 k~LiVLDDV~~~~~--~~~l~~~~~~-~~~GSrIivTTR~~------~v~~~~~~-----~~~y~v~~L~~~~s~~Lf~~ 67 (734)
-+++|||..|.... -+.|..-+.| --++||+|..---. ..+-.... .....-++-+.++-.+++..
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~ 336 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQ 336 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHH
Confidence 48999999977532 1223333334 23688877643111 11111111 24666777899999999988
Q ss_pred hhcCCCC---CchhHHHHHHHHHHHhCCCchHHHHHHhhcC-CcccHHHHHH-Hhhh--hcCCC----chhHHHH-----
Q 004707 68 FAFKENH---CPEDFKRDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLD-DLNR--ICESD----IHDIHDI----- 131 (734)
Q Consensus 68 ~af~~~~---~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~-~~~~W~~~l~-~l~~--~~~~~----i~~i~~~----- 131 (734)
+.-.... .+...+-.|++++.--|-+--|+.+.-+.+. -..+|+.... .+.. .+... +..+..+
T Consensus 337 rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~ 416 (529)
T KOG2227|consen 337 RLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVD 416 (529)
T ss_pred HHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhc
Confidence 7632211 1234555566666666667777777766665 4556766621 1111 11110 1111111
Q ss_pred ---HHhhcccCChhhhhhhhhhcccccCCChhHH-HHHHHhhccchhHHHhhcCCceee--CCeEEecHHHHHHHHHHHh
Q 004707 132 ---LKISFNELMPKMKSIFLDIACFFEGEDKDFV-TRILDDYGSYGLEVLIDKSLITVS--HNCLRMHDLLQEMGREIVR 205 (734)
Q Consensus 132 ---L~~Syd~L~~~~k~~fl~ia~f~~~~~~~~~-~~~l~~~~~~~i~~L~~ksli~~~--~~~~~mHdll~~~~~~i~~ 205 (734)
...+-+.||.++|-+.--++...++..++.- ..+. +.|++.-. +..|..- .....|.|++..-|.--.+
T Consensus 417 ~s~~~~s~~slplqqkiilctl~~l~r~~kkd~s~~eL~----e~Y~k~C~-~~~I~~ld~tEF~~i~~ilet~gil~l~ 491 (529)
T KOG2227|consen 417 GSPSARSRESLPLQQKIILCTLVLLIRGNKKDVSIAELY----EAYLKACQ-KREIAPLDRTEFLSICDILETQGILRLR 491 (529)
T ss_pred cChhhhhhhhcCcccchhHHHHHHHHhcccccccHHHHH----HHHHHHHH-hccCCcccHHHHHHHHHHHHhhhHHHHh
Confidence 1223345677777666666666666553221 1111 23333333 3333332 3355677777777655444
Q ss_pred ccccCCCCcceeccCchhHHHHhh
Q 004707 206 QESEKEPGKRSRLWDPKEIRRVLK 229 (734)
Q Consensus 206 ~e~~~~~~~~~~l~~~~~i~~l~~ 229 (734)
.......++....||..++.....
T Consensus 492 ~~k~~kl~kv~l~vde~~i~~Al~ 515 (529)
T KOG2227|consen 492 RKKEPKLKKVVLQVDEDDIMRALS 515 (529)
T ss_pred hhcCCccceEEEecchHHHHHHHh
Confidence 433233455566788777765543
No 192
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.26 E-value=4.2e+02 Score=30.79 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=61.6
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEc-CChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTT-RDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
=++|+|+++.. +..+.|...+..--+..++|.+| ....+.... .-...|+.+.++.++..+...+.+-+....-+
T Consensus 120 KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~- 198 (584)
T PRK14952 120 RIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD- 198 (584)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 36799999754 45777777776655677766555 445544332 22468999999999988887766543322111
Q ss_pred HHHHHHHHHHHhCCCc-hHHHHHHh
Q 004707 79 FKRDSRRVVKYADGNP-LVLKVLGS 102 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlP-Lal~vlgs 102 (734)
.+....|+++++|-+ -|+..+-.
T Consensus 199 -~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 199 -DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 234456788888876 35444433
No 193
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=21.43 E-value=1e+02 Score=30.40 Aligned_cols=36 Identities=25% Similarity=0.545 Sum_probs=21.3
Q ss_pred EEEEEeCCC--ChHHHHhHhccCCCCCCCcEEEEEcCChhH
Q 004707 3 VLIVLDDVN--KDEQLEGLIGGLDQYGPGSRIVVTTRDKGV 41 (734)
Q Consensus 3 ~LiVLDDV~--~~~~~~~l~~~~~~~~~GSrIivTTR~~~v 41 (734)
.+||+|+.- +.+|+..+... .|.|||||++=-..++
T Consensus 121 ~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 121 AFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQI 158 (205)
T ss_dssp EEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-----
T ss_pred eEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCceee
Confidence 579999994 45678877654 6899999998765543
No 194
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.28 E-value=3.5e+02 Score=30.80 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=53.0
Q ss_pred EEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCCh-hHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDK-GVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
++|+|+|+.. +..+.|...+..--+..++|.+|.+. .+.... .-...+++++++.++..+...+.+=+.+...+
T Consensus 122 V~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-- 199 (509)
T PRK14958 122 VYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-- 199 (509)
T ss_pred EEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 5789999875 45677766665555677777766553 333221 11256889999988776655444422221111
Q ss_pred HHHHHHHHHHhCCCch
Q 004707 80 KRDSRRVVKYADGNPL 95 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPL 95 (734)
.+....+++.++|-+-
T Consensus 200 ~~al~~ia~~s~GslR 215 (509)
T PRK14958 200 NAALDLLARAANGSVR 215 (509)
T ss_pred HHHHHHHHHHcCCcHH
Confidence 2234567777888764
No 195
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=20.18 E-value=5.7e+02 Score=29.52 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=55.2
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEc-CChhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTT-RDKGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTT-R~~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+|+.. ..++.|...+..-.+...+|++| .-..+.... .-...++...++.++..+.+...+-+.....+
T Consensus 120 ~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~ 199 (559)
T PRK05563 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE 199 (559)
T ss_pred eEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 346789999865 45777776655443455555544 444443322 12357888899998888887776643321111
Q ss_pred hHHHHHHHHHHHhCCCch
Q 004707 78 DFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL 95 (734)
.+....+++.++|-+.
T Consensus 200 --~~al~~ia~~s~G~~R 215 (559)
T PRK05563 200 --DEALRLIARAAEGGMR 215 (559)
T ss_pred --HHHHHHHHHHcCCCHH
Confidence 2445567777887664
No 196
>PRK08116 hypothetical protein; Validated
Probab=20.08 E-value=58 Score=33.61 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEeCCCC--hHHHH--hHhccCCC-CCCCcEEEEEcCCh
Q 004707 4 LIVLDDVNK--DEQLE--GLIGGLDQ-YGPGSRIVVTTRDK 39 (734)
Q Consensus 4 LiVLDDV~~--~~~~~--~l~~~~~~-~~~GSrIivTTR~~ 39 (734)
||||||+.. ...|. .|..-+.. ...|..+||||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 789999932 22232 22222211 24567799999653
Done!