Query 004707
Match_columns 734
No_of_seqs 850 out of 5133
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 03:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.4E-30 2.9E-34 290.3 13.9 194 1-208 243-472 (549)
2 3rgz_A Protein brassinosteroid 99.9 2.8E-27 9.5E-32 281.0 18.5 234 222-456 312-556 (768)
3 3rgz_A Protein brassinosteroid 99.9 8.2E-27 2.8E-31 277.0 19.0 212 223-435 338-556 (768)
4 1ogq_A PGIP-2, polygalacturona 99.9 4.3E-27 1.5E-31 249.0 12.4 244 228-473 50-305 (313)
5 4ecn_A Leucine-rich repeat pro 99.9 2.6E-26 8.7E-31 272.2 19.4 259 229-491 324-714 (876)
6 4ecn_A Leucine-rich repeat pro 99.9 4.7E-26 1.6E-30 269.9 20.5 246 244-494 440-748 (876)
7 4eco_A Uncharacterized protein 99.9 2.6E-26 8.9E-31 266.7 17.2 295 220-523 239-597 (636)
8 4eco_A Uncharacterized protein 99.9 5.9E-26 2E-30 263.7 18.3 269 220-496 198-535 (636)
9 4fcg_A Uncharacterized protein 99.9 4.7E-25 1.6E-29 234.9 18.1 205 228-436 81-296 (328)
10 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-25 4.3E-30 237.7 11.4 229 221-451 69-304 (313)
11 3sfz_A APAF-1, apoptotic pepti 99.9 3.6E-25 1.2E-29 277.1 16.4 197 1-207 236-452 (1249)
12 4fcg_A Uncharacterized protein 99.9 2.1E-24 7E-29 229.9 19.4 208 251-476 80-294 (328)
13 2z81_A CD282 antigen, TOLL-lik 99.9 3.1E-24 1.1E-28 245.1 20.0 269 221-491 43-468 (549)
14 3t6q_A CD180 antigen; protein- 99.9 2E-23 6.9E-28 241.4 25.1 251 220-470 49-387 (606)
15 2z7x_B TOLL-like receptor 1, v 99.9 8E-24 2.7E-28 240.1 20.2 107 228-336 21-128 (520)
16 3v47_A TOLL-like receptor 5B a 99.9 1.3E-23 4.3E-28 234.3 21.4 241 228-469 30-357 (455)
17 3bz5_A Internalin-J, INLJ; leu 99.9 2E-22 6.9E-27 224.3 28.5 223 220-462 34-257 (457)
18 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-23 7.6E-28 241.1 21.3 116 222-337 50-167 (606)
19 3o6n_A APL1; leucine-rich repe 99.9 3.7E-23 1.3E-27 225.8 21.9 242 221-470 62-329 (390)
20 3oja_B Anopheles plasmodium-re 99.9 3.2E-23 1.1E-27 239.1 22.4 242 221-470 68-335 (597)
21 3v47_A TOLL-like receptor 5B a 99.9 1.6E-23 5.3E-28 233.5 19.0 249 222-470 48-382 (455)
22 1vt4_I APAF-1 related killer D 99.9 9.9E-25 3.4E-29 252.7 9.0 174 1-200 244-436 (1221)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.7E-23 2E-27 235.4 22.2 108 368-476 350-466 (562)
24 2z7x_B TOLL-like receptor 1, v 99.9 4.1E-23 1.4E-27 234.3 20.5 109 368-477 321-438 (520)
25 2id5_A Lingo-1, leucine rich r 99.9 1.1E-22 3.7E-27 228.3 23.7 240 229-470 33-283 (477)
26 2id5_A Lingo-1, leucine rich r 99.9 1.7E-22 5.9E-27 226.6 25.3 249 220-469 48-306 (477)
27 3t6q_A CD180 antigen; protein- 99.9 7.8E-23 2.7E-27 236.5 22.1 264 229-493 34-396 (606)
28 3zyi_A Leucine-rich repeat-con 99.9 1.5E-22 5.2E-27 225.5 22.9 236 231-470 57-301 (452)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-22 4.3E-27 226.0 21.5 188 223-431 59-247 (457)
30 1xku_A Decorin; proteoglycan, 99.9 3.4E-22 1.2E-26 213.0 24.0 217 229-452 53-277 (330)
31 3zyj_A Leucine-rich repeat-con 99.9 2.2E-22 7.5E-27 223.4 22.8 236 231-470 46-290 (440)
32 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-22 5E-27 216.1 19.5 236 228-471 54-306 (332)
33 1xku_A Decorin; proteoglycan, 99.9 2.3E-22 8E-27 214.3 21.0 225 221-451 69-306 (330)
34 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-22 8.3E-27 229.4 22.2 259 228-488 26-446 (549)
35 2z66_A Variable lymphocyte rec 99.9 1.4E-22 4.9E-27 213.4 17.5 203 229-432 29-238 (306)
36 4fmz_A Internalin; leucine ric 99.9 1.5E-21 5E-26 209.5 25.3 236 222-471 60-299 (347)
37 1jl5_A Outer protein YOPM; leu 99.9 2E-22 7E-27 224.0 19.1 234 229-487 72-311 (454)
38 3j0a_A TOLL-like receptor 5; m 99.9 8.4E-22 2.9E-26 236.4 25.2 230 221-451 66-375 (844)
39 2ft3_A Biglycan; proteoglycan, 99.9 8.4E-22 2.9E-26 210.2 22.3 237 229-476 34-280 (332)
40 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-21 4.4E-26 226.3 25.6 130 228-357 32-164 (606)
41 2z63_A TOLL-like receptor 4, v 99.9 1.6E-22 5.6E-27 231.8 17.9 118 221-338 45-164 (570)
42 1z6t_A APAF-1, apoptotic prote 99.9 9E-23 3.1E-27 235.2 15.4 192 1-203 236-448 (591)
43 1ozn_A Reticulon 4 receptor; N 99.9 1E-22 3.5E-27 212.3 14.2 217 232-452 15-239 (285)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-21 3.5E-26 225.0 22.8 131 343-476 350-489 (562)
45 2z66_A Variable lymphocyte rec 99.9 5.2E-22 1.8E-26 209.1 18.4 235 231-470 10-259 (306)
46 1jl5_A Outer protein YOPM; leu 99.9 3E-21 1E-25 214.6 25.2 243 228-496 131-382 (454)
47 3o6n_A APL1; leucine-rich repe 99.9 8.5E-22 2.9E-26 215.0 20.2 242 220-470 85-350 (390)
48 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-21 8.2E-26 227.1 25.2 275 221-496 42-404 (680)
49 3zyi_A Leucine-rich repeat-con 99.9 1.5E-21 5E-26 217.5 21.2 221 228-451 75-303 (452)
50 3oja_B Anopheles plasmodium-re 99.9 9.9E-22 3.4E-26 226.6 19.7 246 220-471 91-357 (597)
51 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-21 4.9E-26 234.3 21.9 243 228-470 24-349 (844)
52 3g06_A SSPH2 (leucine-rich rep 99.9 2E-20 6.8E-25 214.7 30.4 220 227-477 39-258 (622)
53 1wwl_A Monocyte differentiatio 99.9 1.9E-22 6.6E-27 213.2 12.6 226 221-451 58-309 (312)
54 3zyj_A Leucine-rich repeat-con 99.9 2.2E-21 7.6E-26 215.2 21.8 221 228-451 64-292 (440)
55 2z80_A TOLL-like receptor 2, v 99.9 9.9E-22 3.4E-26 211.5 17.4 241 232-476 35-293 (353)
56 4fmz_A Internalin; leucine ric 99.9 3.1E-21 1.1E-25 206.9 21.2 235 224-471 84-323 (347)
57 2z63_A TOLL-like receptor 4, v 99.9 2.1E-21 7.1E-26 222.6 20.5 239 229-470 29-358 (570)
58 1o6v_A Internalin A; bacterial 99.9 4.7E-21 1.6E-25 214.2 22.9 214 224-451 86-300 (466)
59 1ziw_A TOLL-like receptor 3; i 99.9 4.5E-21 1.5E-25 224.8 23.5 240 228-468 25-305 (680)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.4E-21 1.8E-25 199.3 21.2 202 229-431 33-239 (285)
61 4g8a_A TOLL-like receptor 4; l 99.9 4.8E-21 1.6E-25 222.2 22.0 85 389-473 464-556 (635)
62 2z80_A TOLL-like receptor 2, v 99.9 7.9E-22 2.7E-26 212.2 12.8 246 228-476 52-318 (353)
63 1wwl_A Monocyte differentiatio 99.9 1.1E-21 3.9E-26 207.3 13.8 202 226-431 93-310 (312)
64 1o6v_A Internalin A; bacterial 99.9 2.2E-20 7.6E-25 208.8 24.2 251 224-488 64-324 (466)
65 2xwt_C Thyrotropin receptor; s 99.9 5.8E-21 2E-25 193.6 16.2 205 240-448 22-236 (239)
66 3o53_A Protein LRIM1, AGAP0063 99.9 4.5E-22 1.5E-26 210.8 8.2 235 227-472 33-275 (317)
67 3oja_A Leucine-rich immune mol 99.8 9.6E-22 3.3E-26 220.7 10.0 218 228-456 34-256 (487)
68 2z62_A TOLL-like receptor 4, v 99.8 1E-20 3.6E-25 196.1 17.0 210 242-454 20-240 (276)
69 3rfs_A Internalin B, repeat mo 99.8 5.5E-21 1.9E-25 197.8 14.4 205 248-460 37-244 (272)
70 1p9a_G Platelet glycoprotein I 99.8 2E-20 6.8E-25 195.4 18.0 198 226-429 8-207 (290)
71 3g06_A SSPH2 (leucine-rich rep 99.8 7.2E-20 2.5E-24 210.1 23.2 217 228-476 61-277 (622)
72 2z62_A TOLL-like receptor 4, v 99.8 2.7E-20 9.3E-25 193.0 17.1 202 229-431 29-238 (276)
73 2o6q_A Variable lymphocyte rec 99.8 1.2E-19 4.2E-24 187.4 21.2 196 230-429 18-217 (270)
74 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-20 5.4E-25 199.0 11.1 230 230-470 12-248 (317)
75 4glp_A Monocyte differentiatio 99.8 6.8E-20 2.3E-24 193.4 15.4 199 250-451 89-307 (310)
76 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6.2E-24 189.9 18.4 194 223-429 36-229 (308)
77 3rfs_A Internalin B, repeat mo 99.8 1.6E-19 5.5E-24 186.8 17.6 209 221-440 34-245 (272)
78 2o6q_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 180.9 21.6 195 253-451 17-218 (270)
79 4glp_A Monocyte differentiatio 99.8 4.8E-20 1.6E-24 194.5 11.1 198 229-430 92-307 (310)
80 1h6u_A Internalin H; cell adhe 99.8 2.5E-19 8.5E-24 188.9 15.8 193 248-451 37-230 (308)
81 4g8a_A TOLL-like receptor 4; l 99.8 5.7E-19 2E-23 204.7 20.1 104 367-470 465-578 (635)
82 1p9a_G Platelet glycoprotein I 99.8 1E-18 3.5E-23 182.4 19.7 195 248-449 6-206 (290)
83 2xwt_C Thyrotropin receptor; s 99.8 4E-19 1.4E-23 180.0 15.5 194 229-428 32-237 (239)
84 3oja_A Leucine-rich immune mol 99.8 2E-19 6.9E-24 201.8 13.0 216 219-446 49-270 (487)
85 4ay9_X Follicle-stimulating ho 99.8 3.6E-18 1.2E-22 183.4 18.8 234 231-467 12-254 (350)
86 3m19_A Variable lymphocyte rec 99.8 1.6E-17 5.4E-22 169.6 19.2 174 253-430 15-192 (251)
87 2ca6_A RAN GTPase-activating p 99.8 4.1E-20 1.4E-24 201.4 -0.5 233 222-454 26-319 (386)
88 3cvr_A Invasion plasmid antige 99.8 7.3E-18 2.5E-22 191.1 17.8 182 229-435 60-248 (571)
89 2ast_B S-phase kinase-associat 99.8 1.5E-19 5.3E-24 192.7 3.0 232 223-457 63-312 (336)
90 3m19_A Variable lymphocyte rec 99.7 2.9E-17 9.8E-22 167.7 18.9 176 229-408 15-193 (251)
91 1h6t_A Internalin B; cell adhe 99.7 8.1E-18 2.8E-22 175.7 14.8 173 248-431 42-214 (291)
92 2ast_B S-phase kinase-associat 99.7 1.7E-19 5.7E-24 192.5 1.5 214 230-448 49-282 (336)
93 2ca6_A RAN GTPase-activating p 99.7 6.7E-20 2.3E-24 199.7 -2.7 230 241-470 21-314 (386)
94 4ay9_X Follicle-stimulating ho 99.7 4.5E-17 1.5E-21 174.8 18.5 219 255-477 12-241 (350)
95 2o6s_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 163.0 14.3 176 279-461 10-188 (208)
96 3cvr_A Invasion plasmid antige 99.7 1.6E-17 5.5E-22 188.3 14.6 180 253-457 60-249 (571)
97 1h6t_A Internalin B; cell adhe 99.7 1.1E-16 3.8E-21 167.0 16.5 179 221-411 39-217 (291)
98 1m9s_A Internalin B; cell inva 99.7 5.3E-17 1.8E-21 186.0 14.2 174 248-432 39-212 (605)
99 1z7x_W Ribonuclease inhibitor; 99.7 7.3E-19 2.5E-23 195.9 -2.1 182 225-407 25-240 (461)
100 4ezg_A Putative uncharacterize 99.7 7.2E-17 2.5E-21 158.3 11.9 152 249-406 41-193 (197)
101 1z7x_W Ribonuclease inhibitor; 99.7 3.1E-19 1.1E-23 199.0 -6.1 220 230-450 87-353 (461)
102 3goz_A Leucine-rich repeat-con 99.7 7.3E-18 2.5E-22 181.9 4.1 217 233-450 3-265 (362)
103 3goz_A Leucine-rich repeat-con 99.7 3.9E-18 1.3E-22 184.0 1.7 225 228-453 22-299 (362)
104 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.7E-21 156.3 11.4 152 273-430 41-194 (197)
105 2o6s_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 153.2 15.2 159 252-440 28-188 (208)
106 3e6j_A Variable lymphocyte rec 99.7 7E-16 2.4E-20 155.1 15.6 151 278-431 21-173 (229)
107 1m9s_A Internalin B; cell inva 99.7 8.2E-16 2.8E-20 176.1 17.5 179 221-411 36-214 (605)
108 1xeu_A Internalin C; cellular 99.7 7.9E-17 2.7E-21 165.6 7.7 165 231-431 22-186 (263)
109 1dce_A Protein (RAB geranylger 99.6 2.2E-18 7.4E-23 196.3 -6.1 192 226-423 347-566 (567)
110 2v9t_B SLIT homolog 2 protein 99.6 1.4E-15 4.6E-20 151.9 14.8 147 280-429 15-164 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 2.4E-15 8.3E-20 150.1 14.3 149 280-431 15-167 (220)
112 1dce_A Protein (RAB geranylger 99.6 5.8E-18 2E-22 192.8 -6.4 180 273-456 346-551 (567)
113 1xeu_A Internalin C; cellular 99.6 1.6E-15 5.6E-20 155.7 12.2 153 223-410 36-188 (263)
114 3e6j_A Variable lymphocyte rec 99.6 6.9E-15 2.4E-19 147.7 15.7 150 230-407 21-172 (229)
115 2xot_A Amphoterin-induced prot 99.6 2.5E-15 8.5E-20 161.9 13.2 150 278-428 41-200 (361)
116 2xot_A Amphoterin-induced prot 99.6 2.2E-15 7.5E-20 162.3 12.4 169 279-451 21-202 (361)
117 2v9t_B SLIT homolog 2 protein 99.6 9.8E-15 3.4E-19 145.7 14.7 149 255-407 14-165 (220)
118 3ogk_B Coronatine-insensitive 99.6 2.6E-16 8.9E-21 181.1 3.4 243 226-470 162-447 (592)
119 2v70_A SLIT-2, SLIT homolog 2 99.6 1.3E-14 4.5E-19 144.7 14.6 148 256-407 15-166 (220)
120 4b8c_D Glucose-repressible alc 99.6 5E-16 1.7E-20 182.2 1.8 191 251-448 172-369 (727)
121 2ell_A Acidic leucine-rich nuc 99.5 1.4E-14 4.8E-19 137.9 10.1 137 250-412 22-165 (168)
122 4b8c_D Glucose-repressible alc 99.5 2.5E-15 8.7E-20 176.3 5.6 151 268-427 216-369 (727)
123 3ogk_B Coronatine-insensitive 99.5 1.6E-15 5.6E-20 174.4 3.6 245 224-470 188-499 (592)
124 2ell_A Acidic leucine-rich nuc 99.5 2.4E-14 8.4E-19 136.2 9.4 130 276-431 24-161 (168)
125 2je0_A Acidic leucine-rich nuc 99.5 4.2E-14 1.4E-18 131.7 6.2 124 276-425 17-148 (149)
126 1w8a_A SLIT protein; signaling 99.4 1.7E-13 5.9E-18 133.5 9.9 126 279-407 11-139 (192)
127 2je0_A Acidic leucine-rich nuc 99.4 6.8E-14 2.3E-18 130.2 5.6 104 251-355 16-122 (149)
128 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.6E-18 130.7 7.3 130 274-429 17-152 (176)
129 2p1m_B Transport inhibitor res 99.4 1.7E-14 5.7E-19 165.9 -1.7 246 226-475 103-418 (594)
130 1w8a_A SLIT protein; signaling 99.4 1.7E-12 5.8E-17 126.4 12.6 126 302-431 11-140 (192)
131 2p1m_B Transport inhibitor res 99.4 1.1E-14 3.6E-19 167.6 -3.6 244 226-471 182-493 (594)
132 2wfh_A SLIT homolog 2 protein 99.4 2.5E-12 8.4E-17 125.4 12.8 64 367-430 74-139 (193)
133 2wfh_A SLIT homolog 2 protein 99.4 3.4E-12 1.2E-16 124.4 13.5 125 279-407 13-139 (193)
134 2o6r_A Variable lymphocyte rec 99.4 5.9E-12 2E-16 120.7 14.1 128 278-431 9-138 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.3 6.2E-13 2.1E-17 127.6 6.4 133 248-407 15-153 (176)
136 1ds9_A Outer arm dynein; leuci 99.3 7.5E-15 2.5E-19 144.0 -8.6 125 271-423 43-180 (198)
137 3sb4_A Hypothetical leucine ri 99.3 4.6E-12 1.6E-16 134.4 10.7 83 345-430 225-310 (329)
138 2o6r_A Variable lymphocyte rec 99.3 1.5E-11 5.3E-16 117.8 13.1 128 325-455 9-141 (177)
139 3sb4_A Hypothetical leucine ri 99.3 1.4E-11 4.9E-16 130.6 11.9 221 226-451 23-310 (329)
140 1ds9_A Outer arm dynein; leuci 99.2 5.8E-14 2E-18 137.5 -7.7 127 227-357 17-151 (198)
141 2r9u_A Variable lymphocyte rec 99.2 7E-11 2.4E-15 112.9 12.0 107 279-411 15-122 (174)
142 3g39_A Variable lymphocyte rec 99.2 1.3E-10 4.4E-15 110.6 11.7 106 278-409 11-117 (170)
143 2r9u_A Variable lymphocyte rec 99.2 1.4E-10 4.8E-15 110.8 11.3 103 326-431 15-119 (174)
144 3g39_A Variable lymphocyte rec 99.1 1.8E-10 6.2E-15 109.6 11.1 104 325-431 11-116 (170)
145 4fdw_A Leucine rich hypothetic 99.0 7.7E-09 2.6E-13 112.4 20.8 211 229-450 136-357 (401)
146 3un9_A NLR family member X1; l 99.0 2.3E-11 8E-16 131.0 -4.0 154 252-407 72-252 (372)
147 2ifg_A High affinity nerve gro 98.9 2.1E-09 7.3E-14 114.5 10.5 100 329-429 14-115 (347)
148 4fdw_A Leucine rich hypothetic 98.9 2.5E-08 8.5E-13 108.3 17.7 192 229-431 158-359 (401)
149 2ifg_A High affinity nerve gro 98.8 1E-08 3.4E-13 109.3 9.6 72 267-339 23-96 (347)
150 3un9_A NLR family member X1; l 98.8 3.3E-10 1.1E-14 122.0 -3.6 158 227-385 71-253 (372)
151 2ra8_A Uncharacterized protein 98.7 1.6E-08 5.4E-13 108.0 5.8 62 369-430 250-320 (362)
152 2ra8_A Uncharacterized protein 98.6 6E-09 2.1E-13 111.3 1.8 83 344-428 250-341 (362)
153 2fna_A Conserved hypothetical 98.2 1.9E-06 6.5E-11 91.6 9.0 185 2-199 138-355 (357)
154 2qen_A Walker-type ATPase; unk 98.1 1.9E-05 6.7E-10 83.4 13.2 182 2-198 129-346 (350)
155 4fs7_A Uncharacterized protein 98.0 0.00017 5.7E-09 77.9 18.9 37 223-261 66-103 (394)
156 1io0_A Tropomodulin; LRR prote 98.0 1.6E-06 5.6E-11 83.2 1.3 89 248-336 32-136 (185)
157 1io0_A Tropomodulin; LRR prote 97.9 1.7E-06 5.9E-11 83.1 0.8 60 370-429 92-163 (185)
158 3rw6_A Nuclear RNA export fact 97.9 3.1E-06 1.1E-10 85.8 1.3 67 249-316 167-237 (267)
159 4gt6_A Cell surface protein; l 97.8 0.00038 1.3E-08 75.1 16.3 79 343-425 262-342 (394)
160 4fs7_A Uncharacterized protein 97.8 0.00022 7.7E-09 76.9 14.3 195 223-427 157-353 (394)
161 1w5s_A Origin recognition comp 97.8 3E-05 1E-09 84.1 7.4 174 1-186 138-371 (412)
162 3rw6_A Nuclear RNA export fact 97.7 6.5E-06 2.2E-10 83.4 1.6 38 369-407 194-233 (267)
163 4gt6_A Cell surface protein; l 97.6 0.0017 5.8E-08 69.9 18.0 98 230-331 66-168 (394)
164 3e4g_A ATP synthase subunit S, 97.6 2.8E-05 9.5E-10 73.2 3.0 36 276-311 61-97 (176)
165 3e4g_A ATP synthase subunit S, 97.5 4.2E-05 1.4E-09 72.0 3.8 33 395-428 115-150 (176)
166 2qby_B CDC6 homolog 3, cell di 97.2 0.0026 9E-08 67.9 13.6 170 3-186 135-339 (384)
167 4h09_A Hypothetical leucine ri 97.1 0.017 5.8E-07 61.5 18.5 104 319-426 213-319 (379)
168 4h09_A Hypothetical leucine ri 97.1 0.0061 2.1E-07 65.0 14.6 128 294-426 212-342 (379)
169 1njg_A DNA polymerase III subu 97.0 0.0015 5.3E-08 64.3 9.1 99 2-102 127-229 (250)
170 2v1u_A Cell division control p 97.0 0.0037 1.3E-07 66.6 12.2 143 1-157 130-306 (387)
171 2qby_A CDC6 homolog 1, cell di 96.7 0.0037 1.3E-07 66.6 9.1 141 2-155 129-300 (386)
172 3rfe_A Platelet glycoprotein I 96.1 0.0084 2.9E-07 53.4 6.1 54 374-429 11-67 (130)
173 2chg_A Replication factor C sm 95.8 0.014 4.7E-07 56.5 7.1 97 2-100 103-203 (226)
174 1sxj_B Activator 1 37 kDa subu 95.5 0.04 1.4E-06 56.9 9.5 99 2-102 108-211 (323)
175 1pgv_A TMD-1, tropomodulin TMD 95.1 0.0054 1.9E-07 58.6 1.2 14 371-384 98-111 (197)
176 1fnn_A CDC6P, cell division co 95.1 0.14 4.7E-06 54.3 12.3 175 2-186 126-351 (389)
177 1pgv_A TMD-1, tropomodulin TMD 94.8 0.01 3.5E-07 56.7 2.1 60 368-427 67-136 (197)
178 3rfe_A Platelet glycoprotein I 93.8 0.079 2.7E-06 46.9 5.6 33 277-309 32-65 (130)
179 1hqc_A RUVB; extended AAA-ATPa 93.3 0.85 2.9E-05 46.8 13.6 180 3-194 92-306 (324)
180 1iqp_A RFCS; clamp loader, ext 93.2 0.15 5.1E-06 52.6 7.6 97 2-100 111-211 (327)
181 1jr3_A DNA polymerase III subu 88.0 0.98 3.4E-05 47.3 7.9 98 2-101 120-221 (373)
182 2chq_A Replication factor C sm 87.2 2.5 8.5E-05 42.9 10.3 96 2-99 103-202 (319)
183 1d2n_A N-ethylmaleimide-sensit 86.9 1.5 5.2E-05 43.7 8.3 113 2-121 125-265 (272)
184 3bos_A Putative DNA replicatio 85.9 0.58 2E-05 45.5 4.4 94 3-99 106-215 (242)
185 2z4s_A Chromosomal replication 81.5 0.89 3.1E-05 49.2 3.9 91 3-96 196-301 (440)
186 3h4m_A Proteasome-activating n 80.7 1.9 6.4E-05 43.3 5.8 87 3-93 112-222 (285)
187 1sxj_A Activator 1 95 kDa subu 75.9 6.5 0.00022 43.3 8.8 95 2-101 149-253 (516)
188 1a5t_A Delta prime, HOLB; zinc 75.2 5.4 0.00018 41.1 7.4 92 2-100 109-204 (334)
189 3u61_B DNA polymerase accessor 75.0 12 0.00042 38.0 10.1 89 2-95 106-210 (324)
190 1sxj_E Activator 1 40 kDa subu 74.6 4.9 0.00017 41.5 7.0 93 4-97 137-233 (354)
191 2qz4_A Paraplegin; AAA+, SPG7, 73.4 15 0.00051 35.8 10.0 92 3-95 100-215 (262)
192 3pfi_A Holliday junction ATP-d 66.1 52 0.0018 33.3 12.7 159 30-200 155-328 (338)
193 1sxj_D Activator 1 41 kDa subu 62.9 19 0.00063 36.9 8.5 95 3-100 135-234 (353)
194 1l8q_A Chromosomal replication 61.6 12 0.00041 38.1 6.6 87 3-94 100-201 (324)
195 2qp9_X Vacuolar protein sortin 59.8 36 0.0012 35.1 10.0 95 2-100 144-260 (355)
196 3syl_A Protein CBBX; photosynt 56.9 18 0.0006 36.4 6.8 66 4-71 133-219 (309)
197 3d8b_A Fidgetin-like protein 1 56.8 32 0.0011 35.5 9.0 70 28-101 220-295 (357)
198 3eie_A Vacuolar protein sortin 56.6 38 0.0013 34.3 9.4 94 3-100 112-227 (322)
199 1xwi_A SKD1 protein; VPS4B, AA 55.8 68 0.0023 32.5 11.1 94 3-100 107-222 (322)
200 3vfd_A Spastin; ATPase, microt 43.6 91 0.0031 32.4 10.0 68 29-100 252-325 (389)
201 1jr3_D DNA polymerase III, del 43.4 58 0.002 33.2 8.3 94 3-99 78-183 (343)
202 2zan_A Vacuolar protein sortin 42.7 96 0.0033 33.0 10.2 94 3-100 229-344 (444)
203 3uk6_A RUVB-like 2; hexameric 41.5 53 0.0018 33.7 7.7 89 3-97 191-299 (368)
204 3b9p_A CG5977-PA, isoform A; A 36.3 1.4E+02 0.0049 29.2 9.8 69 28-100 158-232 (297)
205 2gno_A DNA polymerase III, gam 32.7 18 0.00062 36.6 2.2 66 3-69 84-152 (305)
206 3pvs_A Replication-associated 28.3 1.1E+02 0.0037 32.7 7.5 94 2-97 107-211 (447)
207 3te6_A Regulatory protein SIR3 28.3 48 0.0016 33.7 4.4 68 1-69 132-211 (318)
208 1sxj_C Activator 1 40 kDa subu 26.5 1.8E+02 0.0063 29.2 8.8 92 3-96 112-207 (340)
209 2lci_A Protein OR36; structura 26.3 62 0.0021 25.7 3.7 38 8-45 30-67 (134)
210 2lz0_A Uncharacterized protein 23.9 97 0.0033 25.3 4.8 36 295-331 16-51 (100)
211 1jbk_A CLPB protein; beta barr 21.5 17 0.00059 32.9 -0.4 62 2-65 116-194 (195)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=8.4e-30 Score=290.32 Aligned_cols=194 Identities=18% Similarity=0.225 Sum_probs=159.9
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhhcC-CCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLENFG-VEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~-~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
||+||||||||+.+++ .+.. .+|||||||||++.|+..++ ...+|+|++|+.+|||+||.++||+... ++++
T Consensus 243 kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~ 315 (549)
T 2a5y_B 243 PNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKE 315 (549)
T ss_dssp TTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHH
T ss_pred CcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhH
Confidence 4899999999999986 3322 28999999999999999886 5578999999999999999999997643 4688
Q ss_pred HHHHHHHHHHhCCCchHHHHHHhhcCCcccHHHHHHHhhhh----cCCCchhHHHHHHhhcccCChhhhhhhh-------
Q 004707 80 KRDSRRVVKYADGNPLVLKVLGSSLKRKSHWGNVLDDLNRI----CESDIHDIHDILKISFNELMPKMKSIFL------- 148 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal~vlgs~L~~~~~W~~~l~~l~~~----~~~~i~~i~~~L~~Syd~L~~~~k~~fl------- 148 (734)
.+++++|+++|+|+||||+++|+.|+.+ .|+.+ ..+... ...++ ..+|++||++||.+.|.||+
T Consensus 316 ~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w~~~-~~l~~~l~~~~~~~i---~~~l~~Sy~~L~~~lk~~f~~Ls~~er 390 (549)
T 2a5y_B 316 EDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKM-AQLNNKLESRGLVGV---ECITPYSYKSLAMALQRCVEVLSDEDR 390 (549)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHH-HHHHHHHHHHCSSTT---CCCSSSSSSSHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHhccc-hHHHH-HHhHHHhhcccHHHH---HHHHhcccccccHHHHHHHhccchhhh
Confidence 9999999999999999999999999854 57654 444332 33444 89999999999999999999
Q ss_pred ----hhcccccCCChhHHHHHHHhh--c--------------cchhHHHhhcCCceeeC----CeEEecHHHHHHHHHHH
Q 004707 149 ----DIACFFEGEDKDFVTRILDDY--G--------------SYGLEVLIDKSLITVSH----NCLRMHDLLQEMGREIV 204 (734)
Q Consensus 149 ----~ia~f~~~~~~~~~~~~l~~~--~--------------~~~i~~L~~ksli~~~~----~~~~mHdll~~~~~~i~ 204 (734)
|||+||+++.++ + .+|.+. | ..++++|+++||++... .+|+|||+++++|++++
T Consensus 391 ~l~~~ls~fp~~~~i~-i-~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~ 468 (549)
T 2a5y_B 391 SALAFAVVMPPGVDIP-V-KLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVV 468 (549)
T ss_dssp HHTTGGGSSCTTCCEE-H-HHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTS
T ss_pred hHhhheeeeCCCCeee-e-eeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHH
Confidence 999999999887 3 333332 1 13799999999999862 47999999999999998
Q ss_pred hccc
Q 004707 205 RQES 208 (734)
Q Consensus 205 ~~e~ 208 (734)
.+++
T Consensus 469 ~~~~ 472 (549)
T 2a5y_B 469 DAQT 472 (549)
T ss_dssp CTHH
T ss_pred HHHH
Confidence 7765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.8e-27 Score=281.03 Aligned_cols=234 Identities=21% Similarity=0.205 Sum_probs=144.7
Q ss_pred hhHHHHhhcCeeecCCcccccccccc-ccCCCCCcEEEecCCcCCCcCchhhhCCC-cCcEEEeecCCCc-ccCccccC-
Q 004707 222 KEIRRVLKHNKLDLRDCRRLKRISTR-FCKLKSLVDLFLHGCLNLERFPEILEKME-HLKHIYLQRTAIT-ELPSSFEN- 297 (734)
Q Consensus 222 ~~i~~l~~l~~L~L~~~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~-~L~~L~L~~n~l~-~lp~~i~~- 297 (734)
..+..+.++++|++++|...+.+|.. +.++++|++|++++|.+.+.+|..+.+++ +|++|++++|.++ .+|..+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 33444444444444444444444433 44444444444444444444444444443 4444444444444 23433333
Q ss_pred -CCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccc-cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccE
Q 004707 298 -LLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAIS-QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLEC 375 (734)
Q Consensus 298 -l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~ 375 (734)
+++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. +..+++|++
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~ 470 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLET 470 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceE
Confidence 556666666666666666666777777777777777766 56667777777777777776655555554 666777777
Q ss_pred EEeecCCCCC-CCccCCCCCCCcEEeeccCCCC-cccccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCC
Q 004707 376 LHLRDCAVTD-IPQEIGCLSSLEELDLSGNSFE-SLPVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNM 450 (734)
Q Consensus 376 L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~ 450 (734)
|++++|.+++ +|..++.+++|+.|+|++|+++ .+|.+++.+++|+.|+|++|++.+.+|.. .++|+.|++++|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 7777777774 6667777777777777777776 66777777777777777777777766653 35677777777777
Q ss_pred CCCCCC
Q 004707 451 LQSLPE 456 (734)
Q Consensus 451 l~~lp~ 456 (734)
.|.+|.
T Consensus 551 ~g~ip~ 556 (768)
T 3rgz_A 551 NGTIPA 556 (768)
T ss_dssp ESBCCG
T ss_pred CCcCCh
Confidence 766664
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=8.2e-27 Score=276.99 Aligned_cols=212 Identities=24% Similarity=0.278 Sum_probs=188.7
Q ss_pred hHHHHhhcCeeecCCccccccccccccCCC-CCcEEEecCCcCCCcCchhhhC--CCcCcEEEeecCCCc-ccCccccCC
Q 004707 223 EIRRVLKHNKLDLRDCRRLKRISTRFCKLK-SLVDLFLHGCLNLERFPEILEK--MEHLKHIYLQRTAIT-ELPSSFENL 298 (734)
Q Consensus 223 ~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~-~L~~L~L~~~~~~~~~p~~~~~--l~~L~~L~L~~n~l~-~lp~~i~~l 298 (734)
.+..+.++++|++++|...+.+|..+.+++ +|+.|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..++++
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 377888999999999988888999888887 9999999999888888887776 788999999999988 778889999
Q ss_pred CCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccc-cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEE
Q 004707 299 LGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAIS-QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLH 377 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~ 377 (734)
++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. +.++++|++|+
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ 496 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWIS 496 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEE
Confidence 99999999999988899999999999999999999998 78889999999999999998776677665 88899999999
Q ss_pred eecCCCCC-CCccCCCCCCCcEEeeccCCCC-cccccccCCCCCcEEeeecCCCCCCCCC
Q 004707 378 LRDCAVTD-IPQEIGCLSSLEELDLSGNSFE-SLPVSIKQLSQLSSLDLSDCNMLRSLPE 435 (734)
Q Consensus 378 Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~ 435 (734)
|++|++++ +|.+++.+++|+.|+|++|.++ .+|..++.+++|+.|++++|++.+.+|.
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 99999985 8888999999999999999998 7888999999999999999988877773
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=4.3e-27 Score=249.03 Aligned_cols=244 Identities=23% Similarity=0.299 Sum_probs=215.5
Q ss_pred hhcCeeecCCccccc--cccccccCCCCCcEEEecC-CcCCCcCchhhhCCCcCcEEEeecCCCc-ccCccccCCCCCcE
Q 004707 228 LKHNKLDLRDCRRLK--RISTRFCKLKSLVDLFLHG-CLNLERFPEILEKMEHLKHIYLQRTAIT-ELPSSFENLLGLES 303 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~ 303 (734)
.+++.|++++|...+ .+|..|.++++|++|++++ |.+.+.+|..++++++|++|+|++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 357789999998888 8999999999999999995 8888899999999999999999999998 78989999999999
Q ss_pred eeecCCCCCCCCCcccCCCCccceeeccCcccc-cCCccccCCC-CCcEEEcCCCCCCCccCcccCCCCCCccEEEeecC
Q 004707 304 LSVRGCSKLDKLPDNIGNLESLAYILADGSAIS-QLPSSVADSN-VLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDC 381 (734)
Q Consensus 304 L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n 381 (734)
|++++|.+.+.+|..++.+++|++|++++|.+. .+|..++.++ +|+.|++++|...+.+|.. +..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCC
Confidence 999999999899999999999999999999998 8999999998 9999999997765566655 77776 999999999
Q ss_pred CCCC-CCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC
Q 004707 382 AVTD-IPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL 457 (734)
Q Consensus 382 ~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l 457 (734)
.+++ .|..++.+++|+.|++++|.++..++.+..+++|++|+|++|.+.+.+|.. +++|+.|++++|++.+.+|..
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9986 677899999999999999999976667889999999999999998888864 478999999999999988875
Q ss_pred --CcCCceEeccCCcCCC
Q 004707 458 --PLRLRRLRAGNCKLLQ 473 (734)
Q Consensus 458 --~~~L~~L~l~~c~~L~ 473 (734)
.++|+.|++.+++.+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TTGGGSCGGGTCSSSEEE
T ss_pred ccccccChHHhcCCCCcc
Confidence 3456666666666443
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.6e-26 Score=272.15 Aligned_cols=259 Identities=17% Similarity=0.255 Sum_probs=212.5
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEe-cCCcCCCc----------------------------------------
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFL-HGCLNLER---------------------------------------- 267 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L-~~~~~~~~---------------------------------------- 267 (734)
+...|+|+++...+.+|+.|++|++|+.|+| ++|.+.+.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l 403 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403 (876)
T ss_dssp CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence 5677999999999999999999999999999 65532111
Q ss_pred ------------------------------------CchhhhCCCcCcEEEeecCCCcc------------------cCc
Q 004707 268 ------------------------------------FPEILEKMEHLKHIYLQRTAITE------------------LPS 293 (734)
Q Consensus 268 ------------------------------------~p~~~~~l~~L~~L~L~~n~l~~------------------lp~ 293 (734)
+|..++++++|++|+|++|.++. +|.
T Consensus 404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 78889999999999999999998 899
Q ss_pred ccc--CCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcc-ccc--CCccccCCC-------CCcEEEcCCCCCCCc
Q 004707 294 SFE--NLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSA-ISQ--LPSSVADSN-------VLRYLWFPRCRNLVS 361 (734)
Q Consensus 294 ~i~--~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~-l~~--lp~~i~~l~-------~L~~L~l~~~~~l~~ 361 (734)
.++ ++++|++|+|++|.+.+.+|..++++++|+.|++++|. ++. +|..++.++ +|+.|++++|... .
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ 562 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-E 562 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-B
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-c
Confidence 887 99999999999999999999999999999999999997 774 887776655 9999999987654 7
Q ss_pred cCc-ccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCC-CcEEeeecCCCCCCCCCCC--
Q 004707 362 LPP-LLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQ-LSSLDLSDCNMLRSLPELP-- 437 (734)
Q Consensus 362 l~~-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~-L~~L~L~~n~~l~~lp~~~-- 437 (734)
+|. ..++++++|+.|+|++|.++.+| .++.+++|+.|+|++|.++.+|..+..+++ |+.|+|++|.+. .+|..+
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 887 23889999999999999999888 889999999999999999999988999998 999999999876 677643
Q ss_pred ---CCCceEEecCCCCCCCCCCCC--------cCCceEeccCCcCC----------CCCccccccccccCCCCCc
Q 004707 438 ---SCLGFLNLSGCNMLQSLPELP--------LRLRRLRAGNCKLL----------QSLPEIRSSVEELDASVPE 491 (734)
Q Consensus 438 ---~~L~~L~Ls~n~~l~~lp~l~--------~~L~~L~l~~c~~L----------~~l~~l~~s~n~L~~~~p~ 491 (734)
.+|+.|++++|.+.+.+|.++ .+|+.|++++|..- ..+..++++.|.++ .+|.
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 238899999999888777654 36888888887532 23334556667665 4554
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.7e-26 Score=269.91 Aligned_cols=246 Identities=17% Similarity=0.193 Sum_probs=202.5
Q ss_pred ccccccCCCCCcEEEecCCcCCC-----------------cCchhhh--CCCcCcEEEeecCCCc-ccCccccCCCCCcE
Q 004707 244 ISTRFCKLKSLVDLFLHGCLNLE-----------------RFPEILE--KMEHLKHIYLQRTAIT-ELPSSFENLLGLES 303 (734)
Q Consensus 244 ~p~~~~~l~~L~~L~L~~~~~~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~ 303 (734)
+|..|+++++|+.|+|++|.+.+ .+|..++ ++++|++|+|++|.+. .+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999998877 3888877 9999999999999865 78989999999999
Q ss_pred eeecCCC-CCC-CCCcccCCCC-------ccceeeccCcccccCCc--cccCCCCCcEEEcCCCCCCCccCcccCCCCCC
Q 004707 304 LSVRGCS-KLD-KLPDNIGNLE-------SLAYILADGSAISQLPS--SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSS 372 (734)
Q Consensus 304 L~Ls~~~-~~~-~lp~~l~~l~-------~L~~L~l~~n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~ 372 (734)
|+|++|. +.+ .+|..+++++ +|++|++++|.+..+|. .++++++|+.|++++|... .+| .++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCc
Confidence 9999998 666 7887666555 99999999999999999 8999999999999997644 888 3899999
Q ss_pred ccEEEeecCCCCCCCccCCCCCC-CcEEeeccCCCCcccccccCCCC--CcEEeeecCCCCCCCCCCC--------CCCc
Q 004707 373 LECLHLRDCAVTDIPQEIGCLSS-LEELDLSGNSFESLPVSIKQLSQ--LSSLDLSDCNMLRSLPELP--------SCLG 441 (734)
Q Consensus 373 L~~L~Ls~n~l~~lp~~l~~l~~-L~~L~Ls~n~l~~lp~~l~~l~~--L~~L~L~~n~~l~~lp~~~--------~~L~ 441 (734)
|+.|+|++|.+..+|..+..+++ |+.|+|++|.++.+|..+..++. |+.|+|++|++.+.+|..+ .+|+
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 99999999999999999999998 99999999999999988877654 9999999999888776543 3688
Q ss_pred eEEecCCCCCCCCCC----CCcCCceEeccCCcCC-----------------CCCccccccccccCCCCCcccc
Q 004707 442 FLNLSGCNMLQSLPE----LPLRLRRLRAGNCKLL-----------------QSLPEIRSSVEELDASVPENLS 494 (734)
Q Consensus 442 ~L~Ls~n~~l~~lp~----l~~~L~~L~l~~c~~L-----------------~~l~~l~~s~n~L~~~~p~~l~ 494 (734)
.|++++|.+. .+|. ..++|+.|++++|..- ..+..++++.|.++ .+|..+.
T Consensus 677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~ 748 (876)
T 4ecn_A 677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748 (876)
T ss_dssp EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS
T ss_pred EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhh
Confidence 8888888777 5664 2357888888776321 13334556677776 5665554
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.6e-26 Score=266.69 Aligned_cols=295 Identities=16% Similarity=0.208 Sum_probs=242.3
Q ss_pred CchhHH--HHhhcCeeecCCccccccccccccCCCCCcEEEecCCc-CCC-cCchhhhCC------CcCcEEEeecCCCc
Q 004707 220 DPKEIR--RVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCL-NLE-RFPEILEKM------EHLKHIYLQRTAIT 289 (734)
Q Consensus 220 ~~~~i~--~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~-~~~-~~p~~~~~l------~~L~~L~L~~n~l~ 289 (734)
.|..+. .+.++++|++++|...+.+|..|+++++|++|++++|. +.+ .+|..++.+ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 466777 89999999999999999999999999999999999998 777 799988887 99999999999999
Q ss_pred ccCc--cccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCC-CcEEEcCCCCCCCccCccc
Q 004707 290 ELPS--SFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNV-LRYLWFPRCRNLVSLPPLL 366 (734)
Q Consensus 290 ~lp~--~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~-L~~L~l~~~~~l~~l~~~~ 366 (734)
.+|. .++++++|++|++++|.+.+.+| .++++++|++|++++|.+..+|..++.+++ |+.|++++|. +..+|..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~- 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNI- 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSC-
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccccchh-
Confidence 9999 89999999999999999888999 899999999999999999999999999999 9999999976 4478764
Q ss_pred CCCCC--CccEEEeecCCCCC-CCccCC-------CCCCCcEEeeccCCCCcccccc-cCCCCCcEEeeecCCCCCCCCC
Q 004707 367 LSGLS--SLECLHLRDCAVTD-IPQEIG-------CLSSLEELDLSGNSFESLPVSI-KQLSQLSSLDLSDCNMLRSLPE 435 (734)
Q Consensus 367 l~~l~--~L~~L~Ls~n~l~~-lp~~l~-------~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~~l~~lp~ 435 (734)
+..+. +|+.|++++|.+++ +|..+. .+++|+.|++++|.++.+|..+ ..+++|+.|+|++|.+. .+|.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~ 474 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPK 474 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCH
Confidence 55544 89999999999987 677777 7889999999999999999875 45899999999999887 6664
Q ss_pred C-CC----------CCceEEecCCCCCCCCCCC-----CcCCceEeccCCcCCCCCcc----------ccc------ccc
Q 004707 436 L-PS----------CLGFLNLSGCNMLQSLPEL-----PLRLRRLRAGNCKLLQSLPE----------IRS------SVE 483 (734)
Q Consensus 436 ~-~~----------~L~~L~Ls~n~~l~~lp~l-----~~~L~~L~l~~c~~L~~l~~----------l~~------s~n 483 (734)
. +. +|+.|++++|.+. .+|.. .++|+.|++++|..-+ +|. +++ +.|
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 3 22 8999999999888 67753 3578999998886443 442 344 457
Q ss_pred ccCCCCCcccccCCC--------CCCcccCcccccccccccccchhhh
Q 004707 484 ELDASVPENLSKYSN--------NPRVVYPTEISHQFTNCLKLNEKAN 523 (734)
Q Consensus 484 ~L~~~~p~~l~~l~~--------~~~~~~~~~~~~~~~nc~~L~~~~~ 523 (734)
.+.+.+|..+..+.+ |....+|..+ +.++..|+...|
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~---~~~L~~L~Ls~N 597 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDN 597 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC---CTTCCEEECCSC
T ss_pred cccccChHHHhcCCCCCEEECCCCcCCccCHhH---hCcCCEEECcCC
Confidence 777778776655432 3334555543 245555655444
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.9e-26 Score=263.68 Aligned_cols=269 Identities=19% Similarity=0.265 Sum_probs=229.9
Q ss_pred CchhHHHHhhcCeeecCCcccccc-----------------cccccc--CCCCCcEEEecCCcCCCcCchhhhCCCcCcE
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKR-----------------ISTRFC--KLKSLVDLFLHGCLNLERFPEILEKMEHLKH 280 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~-----------------~p~~~~--~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 280 (734)
-|..+..+.++++|+|++|...+. +|..++ ++++|++|+|++|.+.+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 367899999999999999987775 999998 9999999999999999999999999999999
Q ss_pred EEeecCC-Cc--ccCccccCC------CCCcEeeecCCCCCCCCCc--ccCCCCccceeeccCcccc-cCCccccCCCCC
Q 004707 281 IYLQRTA-IT--ELPSSFENL------LGLESLSVRGCSKLDKLPD--NIGNLESLAYILADGSAIS-QLPSSVADSNVL 348 (734)
Q Consensus 281 L~L~~n~-l~--~lp~~i~~l------~~L~~L~Ls~~~~~~~lp~--~l~~l~~L~~L~l~~n~l~-~lp~~i~~l~~L 348 (734)
|++++|. ++ .+|..++++ ++|++|++++|.+. .+|. .++++++|++|++++|.+. .+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 88 489888876 99999999999877 8998 8999999999999999999 999 89999999
Q ss_pred cEEEcCCCCCCCccCcccCCCCCC-ccEEEeecCCCCCCCccCCCCC--CCcEEeeccCCCC-ccccccc-------CCC
Q 004707 349 RYLWFPRCRNLVSLPPLLLSGLSS-LECLHLRDCAVTDIPQEIGCLS--SLEELDLSGNSFE-SLPVSIK-------QLS 417 (734)
Q Consensus 349 ~~L~l~~~~~l~~l~~~~l~~l~~-L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~Ls~n~l~-~lp~~l~-------~l~ 417 (734)
+.|++++|. +..+|.. +..+++ |++|++++|.++.+|..++.++ +|+.|++++|.++ .+|..+. .++
T Consensus 356 ~~L~L~~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQ-ITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSE-EEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCc-cccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 999999975 4478776 888999 9999999999999999887765 9999999999998 4677777 788
Q ss_pred CCcEEeeecCCCCCCCCC----CCCCCceEEecCCCCCCCCCCC-Cc----------CCceEeccCCcCCCCCc------
Q 004707 418 QLSSLDLSDCNMLRSLPE----LPSCLGFLNLSGCNMLQSLPEL-PL----------RLRRLRAGNCKLLQSLP------ 476 (734)
Q Consensus 418 ~L~~L~L~~n~~l~~lp~----~~~~L~~L~Ls~n~~l~~lp~l-~~----------~L~~L~l~~c~~L~~l~------ 476 (734)
+|+.|+|++|.+. .+|. .+++|+.|++++|.+. .+|.. .. +|+.|++++|..- .+|
T Consensus 434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 510 (636)
T 4eco_A 434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT 510 (636)
T ss_dssp CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT
T ss_pred CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc
Confidence 9999999999877 5664 3588999999999988 67653 22 8999999887532 333
Q ss_pred ------cccccccccCCCCCcccccC
Q 004707 477 ------EIRSSVEELDASVPENLSKY 496 (734)
Q Consensus 477 ------~l~~s~n~L~~~~p~~l~~l 496 (734)
.++++.|.+++ +|..+..+
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l 535 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNS 535 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcC
Confidence 34556666655 55554433
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=4.7e-25 Score=234.92 Aligned_cols=205 Identities=29% Similarity=0.473 Sum_probs=159.3
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeec
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVR 307 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls 307 (734)
..++.|++++|... .+|..+.++++|++|+|++|.+. .+|..++++++|++|+|++|.++.+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 46788999988654 78888888999999999998776 88888899999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCC---------CCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEe
Q 004707 308 GCSKLDKLPDNIGN---------LESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHL 378 (734)
Q Consensus 308 ~~~~~~~lp~~l~~---------l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~L 378 (734)
+|+..+.+|..++. +++|++|++++|.++.+|..++.+++|+.|++++|. +..+|+. +..+++|++|+|
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEEC
Confidence 99999999887664 788888888888887777777777777777777754 3445554 666777777777
Q ss_pred ecCCCCC-CCccCCCCCCCcEEeeccCCCC-cccccccCCCCCcEEeeecCCCCCCCCCC
Q 004707 379 RDCAVTD-IPQEIGCLSSLEELDLSGNSFE-SLPVSIKQLSQLSSLDLSDCNMLRSLPEL 436 (734)
Q Consensus 379 s~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~~ 436 (734)
++|++.+ +|..++.+++|+.|+|++|++. .+|..+..+++|+.|+|++|++++.+|..
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 7766654 6666777777777777776544 66666777777777777777777766643
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.3e-25 Score=237.75 Aligned_cols=229 Identities=20% Similarity=0.287 Sum_probs=208.9
Q ss_pred chhHHHHhhcCeeecCC-ccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCc-ccCccccCC
Q 004707 221 PKEIRRVLKHNKLDLRD-CRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAIT-ELPSSFENL 298 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~-~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~i~~l 298 (734)
|..+..+..+++|++++ |...+.+|..|+++++|++|+|++|.+.+.+|..+.++++|++|++++|.++ .+|..+.++
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 56888999999999995 7788899999999999999999999988899999999999999999999999 789999999
Q ss_pred CCCcEeeecCCCCCCCCCcccCCCC-ccceeeccCcccc-cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEE
Q 004707 299 LGLESLSVRGCSKLDKLPDNIGNLE-SLAYILADGSAIS-QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECL 376 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~l~~l~-~L~~L~l~~n~l~-~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L 376 (734)
++|++|++++|.+.+.+|..++.++ +|++|++++|.+. .+|..+..++ |+.|++++|... ..++..+..+++|+.|
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE-GDASVLFGSDKNTQKI 226 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE-ECCGGGCCTTSCCSEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc-CcCCHHHhcCCCCCEE
Confidence 9999999999999889999999998 9999999999998 8899999887 999999997544 4445558999999999
Q ss_pred EeecCCCCCCCccCCCCCCCcEEeeccCCCC-cccccccCCCCCcEEeeecCCCCCCCCCC--CCCCceEEecCCCCC
Q 004707 377 HLRDCAVTDIPQEIGCLSSLEELDLSGNSFE-SLPVSIKQLSQLSSLDLSDCNMLRSLPEL--PSCLGFLNLSGCNML 451 (734)
Q Consensus 377 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~~--~~~L~~L~Ls~n~~l 451 (734)
+|++|.++..+..+..+++|++|++++|.++ .+|.++..+++|+.|+|++|++.+.+|.. +++|+.|++++|+.+
T Consensus 227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred ECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 9999999986666889999999999999999 89999999999999999999999999875 467899999999854
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=3.6e-25 Score=277.10 Aligned_cols=197 Identities=23% Similarity=0.382 Sum_probs=167.4
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhh-cCCCceEECCC-CCHHHHHHHHHHhhcCCCCCchh
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLEN-FGVEKIYRVNG-LEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~-~~~~~~y~v~~-L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
||+||||||||+.++|+.+ ++|||||||||++.|+.. ++...+|+++. |+++||++||...|+.. .++
T Consensus 236 ~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~ 305 (1249)
T 3sfz_A 236 PRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KED 305 (1249)
T ss_dssp CSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STT
T ss_pred CCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhh
Confidence 4899999999999998864 689999999999999954 56678999996 99999999999999543 345
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHhhcC-CcccHHHHHHHhhhhcCCC--------chhHHHHHHhhcccCChhhhhhhhh
Q 004707 79 FKRDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDDLNRICESD--------IHDIHDILKISFNELMPKMKSIFLD 149 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPLal~vlgs~L~-~~~~W~~~l~~l~~~~~~~--------i~~i~~~L~~Syd~L~~~~k~~fl~ 149 (734)
+.+++++|+++|+|+||||+++|+.|+ ...+|+.+++++....... ...+..++++||+.|++++|.||+|
T Consensus 306 ~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~ 385 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTD 385 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred CcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 667899999999999999999999999 5678999999987655333 2457999999999999999999999
Q ss_pred hcccccCCCh--hHHHHHHHh---hccchhHHHhhcCCceee-CC---eEEecHHHHHHHHHHHhcc
Q 004707 150 IACFFEGEDK--DFVTRILDD---YGSYGLEVLIDKSLITVS-HN---CLRMHDLLQEMGREIVRQE 207 (734)
Q Consensus 150 ia~f~~~~~~--~~~~~~l~~---~~~~~i~~L~~ksli~~~-~~---~~~mHdll~~~~~~i~~~e 207 (734)
||+||+++.+ +.+..+|.. .+..+++.|+++||++.. ++ +|+|||++|+++++..+++
T Consensus 386 l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 386 LSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp GGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred hCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999754 556666643 337889999999999987 34 4999999999999886654
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.1e-24 Score=229.94 Aligned_cols=208 Identities=27% Similarity=0.434 Sum_probs=124.7
Q ss_pred CCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeec
Q 004707 251 LKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILA 330 (734)
Q Consensus 251 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 330 (734)
.++++.|+|++|.+. .+|..+.++++|++|+|++|.++.+|..++++++|++|+|++|.+. .+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 466777777776543 5666666677777777777777777766777777777777776554 66666666666666666
Q ss_pred cCccc-ccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcc
Q 004707 331 DGSAI-SQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESL 409 (734)
Q Consensus 331 ~~n~l-~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 409 (734)
++|.+ ..+|..++. ..+. ..+.++++|++|+|++|.++.+|..++.+++|++|+|++|.++.+
T Consensus 158 ~~n~~~~~~p~~~~~------~~~~----------~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TDAS----------GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EEETTCCCCCSCSEE------EC-C----------CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCCccccChhHhh------ccch----------hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC
Confidence 66433 355554432 0000 002345666666666666666666666666666666666666666
Q ss_pred cccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC---CcCCceEeccCCcCCCCCc
Q 004707 410 PVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL---PLRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 410 p~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l---~~~L~~L~l~~c~~L~~l~ 476 (734)
|..++.+++|+.|+|++|.+.+.+|.. +++|+.|++++|++.+.+|.. .++|+.|++++|..++.+|
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 666666666666666666666665543 245666666666666666642 2345555555555444444
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=3.1e-24 Score=245.12 Aligned_cols=269 Identities=24% Similarity=0.284 Sum_probs=166.0
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcc--cCccccCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITE--LPSSFENL 298 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~--lp~~i~~l 298 (734)
+..+..+.++++|++++|...+..|..|+++++|++|+|++|.+.+..|..++++++|++|++++|.++. +|..++++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 3455566667777777766655555666677777777777766665555556677777777777776663 34556666
Q ss_pred CCCcEeeecCCCCCCCCC-cccCCCCccceeeccCccccc-CCcccc------------------------CCCCCcEEE
Q 004707 299 LGLESLSVRGCSKLDKLP-DNIGNLESLAYILADGSAISQ-LPSSVA------------------------DSNVLRYLW 352 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~-lp~~i~------------------------~l~~L~~L~ 352 (734)
++|++|++++|...+.+| ..++++++|++|++++|.+.. .|..++ .+++|++|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 667777766666555554 345556666666665555542 233322 234444444
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 004707 353 FPRCRNL------------------------------------------------------------------------- 359 (734)
Q Consensus 353 l~~~~~l------------------------------------------------------------------------- 359 (734)
+++|...
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 4443211
Q ss_pred ----------------------------------------CccCcccCCCCCCccEEEeecCCCCC-CC---ccCCCCCC
Q 004707 360 ----------------------------------------VSLPPLLLSGLSSLECLHLRDCAVTD-IP---QEIGCLSS 395 (734)
Q Consensus 360 ----------------------------------------~~l~~~~l~~l~~L~~L~Ls~n~l~~-lp---~~l~~l~~ 395 (734)
..+|...+..+++|++|++++|++++ +| ..++.+++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 11222212357788888888888876 33 33677888
Q ss_pred CcEEeeccCCCCcccc---cccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCCCcCCceEeccCC
Q 004707 396 LEELDLSGNSFESLPV---SIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPELPLRLRRLRAGNC 469 (734)
Q Consensus 396 L~~L~Ls~n~l~~lp~---~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~~c 469 (734)
|+.|++++|.++.+|. .+..+++|+.|++++|++. .+|.. +++|++|++++|.+.+.-...+.+|+.|++++|
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCC
Confidence 8888888888887653 4777888888888888765 45542 367888888888765322234557777777776
Q ss_pred cC------CCCCccccccccccCCCCCc
Q 004707 470 KL------LQSLPEIRSSVEELDASVPE 491 (734)
Q Consensus 470 ~~------L~~l~~l~~s~n~L~~~~p~ 491 (734)
.. +..+..++++.|+++ .+|.
T Consensus 442 ~l~~~~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 442 NLDSFSLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred ChhhhcccCChhcEEECCCCccC-cCCC
Confidence 42 334445666777775 4553
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2e-23 Score=241.40 Aligned_cols=251 Identities=21% Similarity=0.174 Sum_probs=173.0
Q ss_pred CchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCccc-CccccCC
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITEL-PSSFENL 298 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~i~~l 298 (734)
.+..+..+.++++|++++|...+..|..|.++++|++|+|++|.+.+..|..++++++|++|++++|.++.+ |..++++
T Consensus 49 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 49 QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128 (606)
T ss_dssp CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccC
Confidence 355677788888888888877777777888888888888888887777788888888888888888888876 4557888
Q ss_pred CCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccC-CccccCCCCCc--EEEcCCCCC-----------------
Q 004707 299 LGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQL-PSSVADSNVLR--YLWFPRCRN----------------- 358 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~--~L~l~~~~~----------------- 358 (734)
++|++|++++|.+.+.-+..+..+++|++|++++|.+..+ |..++.+++|+ .|++++|..
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 8888888888776663323344488888888888887755 44566667666 666665432
Q ss_pred ---------------------------------------------------------CCccCcccCCCCCCccEEEeecC
Q 004707 359 ---------------------------------------------------------LVSLPPLLLSGLSSLECLHLRDC 381 (734)
Q Consensus 359 ---------------------------------------------------------l~~l~~~~l~~l~~L~~L~Ls~n 381 (734)
+..+++..+..+++|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 12233333556667777777777
Q ss_pred CCCCCCccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCC----CCCCCceEEecCCCCCCCC--
Q 004707 382 AVTDIPQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPE----LPSCLGFLNLSGCNMLQSL-- 454 (734)
Q Consensus 382 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~----~~~~L~~L~Ls~n~~l~~l-- 454 (734)
.++++|..++.+++|++|++++|.++.+ |..+..+++|+.|++++|.+.+.+|. ..++|+.|++++|.+.+..
T Consensus 289 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368 (606)
T ss_dssp CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc
Confidence 7777777777777777777777777655 44666777777777777766655553 2356777777777665432
Q ss_pred CC---CCcCCceEeccCCc
Q 004707 455 PE---LPLRLRRLRAGNCK 470 (734)
Q Consensus 455 p~---l~~~L~~L~l~~c~ 470 (734)
|. ..++|+.|++++|.
T Consensus 369 ~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp TTTTTTCTTCCEEECCSCS
T ss_pred chhcccCCCCCEEECCCCc
Confidence 21 23456666666654
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=8e-24 Score=240.13 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=62.8
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeec
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVR 307 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls 307 (734)
.+++.|++++|...+..|..|.++++|++|+|++|.+.+..|..++++++|++|+|++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 4555666666655544445566666666666666655555555666666666666666666666554 56666666666
Q ss_pred CCCCCC-CCCcccCCCCccceeeccCcccc
Q 004707 308 GCSKLD-KLPDNIGNLESLAYILADGSAIS 336 (734)
Q Consensus 308 ~~~~~~-~lp~~l~~l~~L~~L~l~~n~l~ 336 (734)
+|.+.+ .+|..++++++|++|++++|.+.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCccccccchhhhccCCcceEEEecCcccc
Confidence 655554 35555666666666655555443
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.3e-23 Score=234.28 Aligned_cols=241 Identities=18% Similarity=0.146 Sum_probs=141.7
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcC-chhhhCCCcCcEEEeecCCCccc-CccccCCCCCcEee
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERF-PEILEKMEHLKHIYLQRTAITEL-PSSFENLLGLESLS 305 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~ 305 (734)
.++++|++++|...+..|..|+++++|++|++++|...+.+ +..+.++++|++|+|++|.++.+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45677777777666655666777777777777777665444 44567777777777777777755 55677777777777
Q ss_pred ecCCCCCCCCCcc--cCCCCccceeeccCcccccC-Ccc-ccCCCCCcEEEcCCCCCCCccCcccCC-------------
Q 004707 306 VRGCSKLDKLPDN--IGNLESLAYILADGSAISQL-PSS-VADSNVLRYLWFPRCRNLVSLPPLLLS------------- 368 (734)
Q Consensus 306 Ls~~~~~~~lp~~--l~~l~~L~~L~l~~n~l~~l-p~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~------------- 368 (734)
+++|.+.+.+|.. ++++++|++|++++|.+..+ |.. +..+++|++|++++|......+. .+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccc
Confidence 7777666544444 67777777777777777755 433 66777777777776543222221 111
Q ss_pred ---------------------CCCCccEEEeecCCCCC-CCccC------------------------------------
Q 004707 369 ---------------------GLSSLECLHLRDCAVTD-IPQEI------------------------------------ 390 (734)
Q Consensus 369 ---------------------~l~~L~~L~Ls~n~l~~-lp~~l------------------------------------ 390 (734)
.+++|++|++++|.+++ +|..+
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 23456666666665542 11100
Q ss_pred -C--CCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC---CcC
Q 004707 391 -G--CLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL---PLR 460 (734)
Q Consensus 391 -~--~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l---~~~ 460 (734)
. ..++|+.|++++|.++.+ |..++.+++|+.|+|++|.+.+..|.. .++|+.|++++|.+.+..|.. ..+
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 0 113556666666655533 444566666666666666655544432 245666666666554433332 345
Q ss_pred CceEeccCC
Q 004707 461 LRRLRAGNC 469 (734)
Q Consensus 461 L~~L~l~~c 469 (734)
|+.|++++|
T Consensus 349 L~~L~Ls~N 357 (455)
T 3v47_A 349 LEVLDLSYN 357 (455)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 566666555
No 17
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2e-22 Score=224.27 Aligned_cols=223 Identities=17% Similarity=0.166 Sum_probs=181.7
Q ss_pred CchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCC
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLL 299 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~ 299 (734)
++..+..+.++++|++++|...+ +| .+..+++|++|++++|.+.+ +| ++.+++|++|++++|.++.+| +++++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee--cCCCC
Confidence 45578899999999999986554 56 58899999999999997665 44 889999999999999999886 88999
Q ss_pred CCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEee
Q 004707 300 GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLR 379 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls 379 (734)
+|++|++++|.+.+ +| ++++++|++|++++|.++.++ ++.+++|+.|++++|..++.++ +..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECC
Confidence 99999999987665 55 889999999999999999885 8889999999999987777773 6788899999999
Q ss_pred cCCCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCC-CCCCCCceEEecCCCCCCCCCCCC
Q 004707 380 DCAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLP-ELPSCLGFLNLSGCNMLQSLPELP 458 (734)
Q Consensus 380 ~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp-~~~~~L~~L~Ls~n~~l~~lp~l~ 458 (734)
+|+++++| ++.+++|+.|++++|.++.++ ++.+++|+.|++++|++.+ +| ..+++|+.|++++|.+.+..+...
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred CCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCCCcCHHHC
Confidence 99988877 777888888888888888773 7778888888888887766 44 234678888888887766444334
Q ss_pred cCCc
Q 004707 459 LRLR 462 (734)
Q Consensus 459 ~~L~ 462 (734)
++|+
T Consensus 254 ~~L~ 257 (457)
T 3bz5_A 254 SKLT 257 (457)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 4443
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.2e-23 Score=241.05 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=74.6
Q ss_pred hhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC-ccccCCCC
Q 004707 222 KEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP-SSFENLLG 300 (734)
Q Consensus 222 ~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~~ 300 (734)
..+..+.++++|++++|...+..|..|.++++|++|+|++|.+.+..|..++++++|++|++++|.++.+| ..++++++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 35556666677777766655555666666777777777766665555666666667777777766666555 44666666
Q ss_pred CcEeeecCCCCCC-CCCcccCCCCccceeeccCccccc
Q 004707 301 LESLSVRGCSKLD-KLPDNIGNLESLAYILADGSAISQ 337 (734)
Q Consensus 301 L~~L~Ls~~~~~~-~lp~~l~~l~~L~~L~l~~n~l~~ 337 (734)
|++|++++|.+.+ .+|..++++++|++|++++|.++.
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 6666666666554 456666666666666666665543
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=3.7e-23 Score=225.78 Aligned_cols=242 Identities=18% Similarity=0.159 Sum_probs=193.1
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLL 299 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~ 299 (734)
+..+..+.++++|++++|......+..|..+++|++|+|++|.+.+..|..++++++|++|++++|.++.+|.. +.+++
T Consensus 62 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 141 (390)
T 3o6n_A 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141 (390)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCC
Confidence 34467788999999999987666666899999999999999988877788889999999999999999999887 58999
Q ss_pred CCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCC------------------CCCc
Q 004707 300 GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCR------------------NLVS 361 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~------------------~l~~ 361 (734)
+|++|++++|.+.+..|..++++++|++|++++|.++.++ +..+++|+.|++++|. .+..
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCE
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeee
Confidence 9999999999888777888999999999999999998764 4455566655555542 1222
Q ss_pred cCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCC---CC
Q 004707 362 LPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPE---LP 437 (734)
Q Consensus 362 l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~---~~ 437 (734)
++. ...++|+.|++++|.+++. ..++.+++|++|++++|.++.+ |..+..+++|+.|+|++|++.+ +|. .+
T Consensus 220 ~~~---~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 220 VRG---PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp EEC---CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC
T ss_pred ccc---cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC
Confidence 222 2346788888888888876 4678899999999999999865 6788899999999999998765 332 35
Q ss_pred CCCceEEecCCCCCCCCCCC---CcCCceEeccCCc
Q 004707 438 SCLGFLNLSGCNMLQSLPEL---PLRLRRLRAGNCK 470 (734)
Q Consensus 438 ~~L~~L~Ls~n~~l~~lp~l---~~~L~~L~l~~c~ 470 (734)
++|+.|++++|.+. .+|.. .++|+.|++++|+
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 78999999999776 44432 3678899998886
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.2e-23 Score=239.09 Aligned_cols=242 Identities=18% Similarity=0.150 Sum_probs=179.5
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLL 299 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~ 299 (734)
+..+..+..+++|++++|...+..|..|+.+++|++|+|++|.+.+..|..++++++|++|+|++|.++.+|.. |++++
T Consensus 68 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 44567788999999999987777777899999999999999988887788889999999999999999999887 58999
Q ss_pred CCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCC------------------CCc
Q 004707 300 GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRN------------------LVS 361 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~------------------l~~ 361 (734)
+|++|+|++|.+.+..|..++++++|++|++++|.+..++ ++.+++|+.|++++|.. +..
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence 9999999999888888888999999999999999998765 34455555555554321 122
Q ss_pred cCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCC---CC
Q 004707 362 LPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPE---LP 437 (734)
Q Consensus 362 l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~---~~ 437 (734)
++.. ..++|+.|+|++|.+++. ..++.+++|+.|+|++|.++.+ |..++.+++|+.|+|++|.+.+ +|. .+
T Consensus 226 ~~~~---~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 226 VRGP---VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp EECS---CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred cccc---cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 2211 124567777777766663 4566677777777777777744 5567777777777777776654 232 24
Q ss_pred CCCceEEecCCCCCCCCCCC---CcCCceEeccCCc
Q 004707 438 SCLGFLNLSGCNMLQSLPEL---PLRLRRLRAGNCK 470 (734)
Q Consensus 438 ~~L~~L~Ls~n~~l~~lp~l---~~~L~~L~l~~c~ 470 (734)
++|+.|+|++|.+. .+|.. .++|+.|++++|.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 56777777777665 44432 3467777777765
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.6e-23 Score=233.51 Aligned_cols=249 Identities=16% Similarity=0.128 Sum_probs=144.8
Q ss_pred hhHHHHhhcCeeecCCccccccc-cccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcc-cCcc--ccC
Q 004707 222 KEIRRVLKHNKLDLRDCRRLKRI-STRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITE-LPSS--FEN 297 (734)
Q Consensus 222 ~~i~~l~~l~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~-lp~~--i~~ 297 (734)
..+..+.++++|++++|...+.+ |..|.++++|++|+|++|.+.+..|..++++++|++|++++|.++. +|.. +++
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 34444555555555555444333 2345555555555555555444445555555555555555555542 2222 455
Q ss_pred CCCCcEeeecCCCCCCCCCcc-cCCCCccceeeccCcccccCC-cc----------------------------------
Q 004707 298 LLGLESLSVRGCSKLDKLPDN-IGNLESLAYILADGSAISQLP-SS---------------------------------- 341 (734)
Q Consensus 298 l~~L~~L~Ls~~~~~~~lp~~-l~~l~~L~~L~l~~n~l~~lp-~~---------------------------------- 341 (734)
+++|++|++++|.+.+..|.. ++++++|++|++++|.+..++ ..
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 555555555555544444443 455555555555555544321 11
Q ss_pred ccCCCCCcEEEcCCCCCCCccCcc------------------------------------cCC--CCCCccEEEeecCCC
Q 004707 342 VADSNVLRYLWFPRCRNLVSLPPL------------------------------------LLS--GLSSLECLHLRDCAV 383 (734)
Q Consensus 342 i~~l~~L~~L~l~~~~~l~~l~~~------------------------------------~l~--~l~~L~~L~Ls~n~l 383 (734)
+..+++|+.|++++|......+.. .+. ..++|+.|++++|.+
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 123356777777766432211100 011 125788888888888
Q ss_pred CC-CCccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC-
Q 004707 384 TD-IPQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL- 457 (734)
Q Consensus 384 ~~-lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l- 457 (734)
.+ .|..++.+++|+.|++++|.++.+ |..+..+++|+.|+|++|.+.+..|.. +++|+.|++++|.+.+..|..
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 77 566678888888888888888865 446778888888888888776554533 467888888888777655542
Q ss_pred --CcCCceEeccCCc
Q 004707 458 --PLRLRRLRAGNCK 470 (734)
Q Consensus 458 --~~~L~~L~l~~c~ 470 (734)
.++|++|++++|.
T Consensus 368 ~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 368 LGLPNLKELALDTNQ 382 (455)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cccccccEEECCCCc
Confidence 3567777777764
No 22
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.90 E-value=9.9e-25 Score=252.65 Aligned_cols=174 Identities=20% Similarity=0.269 Sum_probs=142.3
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhhcCCCceEECC------CCCHHHHHHHHHHhhcCCCC
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLENFGVEKIYRVN------GLEFYEAFELFYYFAFKENH 74 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~~~~~y~v~------~L~~~~s~~Lf~~~af~~~~ 74 (734)
||+||||||||+.++|+.+ ++|||||||||++.++..++...+|+|+ +|+.+|||+||+++ |+..
T Consensus 244 KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~- 314 (1221)
T 1vt4_I 244 ENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR- 314 (1221)
T ss_dssp SSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-
T ss_pred CCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-
Confidence 6899999999999999875 2899999999999999765544578888 99999999999998 4432
Q ss_pred CchhHHHHHHHHHHHhCCCchHHHHHHhhcC----CcccHHHHHHHhhhhcCCCchhHHHHHHhhcccCChhh-hhhhhh
Q 004707 75 CPEDFKRDSRRVVKYADGNPLVLKVLGSSLK----RKSHWGNVLDDLNRICESDIHDIHDILKISFNELMPKM-KSIFLD 149 (734)
Q Consensus 75 ~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~----~~~~W~~~l~~l~~~~~~~i~~i~~~L~~Syd~L~~~~-k~~fl~ 149 (734)
..++..++ |+|+||||+++|+.|+ +.++|+.. ....+..+|+.||+.||+++ |.||++
T Consensus 315 ----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~ 377 (1221)
T 1vt4_I 315 ----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDR 377 (1221)
T ss_dssp ----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHH
T ss_pred ----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 23344444 9999999999999998 23566542 12456999999999999999 999999
Q ss_pred hcccccCCCh--hHHHHHHHhh----ccchhHHHhhcCCceee--CCeEEecHHHHHHH
Q 004707 150 IACFFEGEDK--DFVTRILDDY----GSYGLEVLIDKSLITVS--HNCLRMHDLLQEMG 200 (734)
Q Consensus 150 ia~f~~~~~~--~~~~~~l~~~----~~~~i~~L~~ksli~~~--~~~~~mHdll~~~~ 200 (734)
||+||+++.+ +.+..+|... +..+++.|+++||++.. .++++|||++++++
T Consensus 378 LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp TTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999998765 4566677654 46789999999999986 46899999998865
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=5.7e-23 Score=235.40 Aligned_cols=108 Identities=24% Similarity=0.253 Sum_probs=75.4
Q ss_pred CCCCCccEEEeecCCCCC-CCccCCCCCCCcEEeeccCCCCccc---ccccCCCCCcEEeeecCCCCCCCCC----CCCC
Q 004707 368 SGLSSLECLHLRDCAVTD-IPQEIGCLSSLEELDLSGNSFESLP---VSIKQLSQLSSLDLSDCNMLRSLPE----LPSC 439 (734)
Q Consensus 368 ~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~n~~l~~lp~----~~~~ 439 (734)
..+++|++|++++|.+++ +|..++.+++|+.|++++|+++.+| ..+..+++|+.|++++|.+.+.+|. .+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456777777777777776 6667777777888888877777543 4567777788888887777665553 2367
Q ss_pred CceEEecCCCCCCCCCCCC-cCCceEeccCCcCCCCCc
Q 004707 440 LGFLNLSGCNMLQSLPELP-LRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 440 L~~L~Ls~n~~l~~lp~l~-~~L~~L~l~~c~~L~~l~ 476 (734)
|+.|++++|.+.+.+|... .+|+.|++++| .++.+|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip 466 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIP 466 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccC
Confidence 7778888887776666543 57778877777 344554
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=4.1e-23 Score=234.28 Aligned_cols=109 Identities=24% Similarity=0.300 Sum_probs=83.8
Q ss_pred CCCCCccEEEeecCCCCC-CCccCCCCCCCcEEeeccCCCCc---ccccccCCCCCcEEeeecCCCCCCCCC----CCCC
Q 004707 368 SGLSSLECLHLRDCAVTD-IPQEIGCLSSLEELDLSGNSFES---LPVSIKQLSQLSSLDLSDCNMLRSLPE----LPSC 439 (734)
Q Consensus 368 ~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~n~~l~~lp~----~~~~ 439 (734)
..+++|++|++++|.+++ +|..++.+++|++|++++|+++. +|..++.+++|+.|++++|.+.+.+|. .+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567888888888888887 77788888888888888888884 455678888888888888888775653 3467
Q ss_pred CceEEecCCCCCCCCCCCC-cCCceEeccCCcCCCCCcc
Q 004707 440 LGFLNLSGCNMLQSLPELP-LRLRRLRAGNCKLLQSLPE 477 (734)
Q Consensus 440 L~~L~Ls~n~~l~~lp~l~-~~L~~L~l~~c~~L~~l~~ 477 (734)
|+.|++++|.+.+.+|... .+|+.|++++|. ++.+|.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~ 438 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPK 438 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCG
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccch
Confidence 8888888888877666543 688888888874 445554
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=228.26 Aligned_cols=240 Identities=23% Similarity=0.277 Sum_probs=159.0
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeeec
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSVR 307 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls 307 (734)
.++.|+|++|...+..|..|.++++|++|+|++|.+.+..|..+.++++|++|+|++|.++.+|.. |.++++|++|+|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 466777777766665566677777777777777766666677777777777777777777777654 5677777777777
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccC-CccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQL-PSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI 386 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l 386 (734)
+|.+.+..|..+.++++|++|++++|.+..+ |..+..+++|+.|++++| .+..+++..+..+++|+.|+|++|.+..+
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 7777666666777777777777777777754 446667777777777775 35556655566777777777777777764
Q ss_pred C-ccCCCCCCCcEEeeccCCC-CcccccccCCCCCcEEeeecCCCCCCCC----CCCCCCceEEecCCCCCCCCCC---C
Q 004707 387 P-QEIGCLSSLEELDLSGNSF-ESLPVSIKQLSQLSSLDLSDCNMLRSLP----ELPSCLGFLNLSGCNMLQSLPE---L 457 (734)
Q Consensus 387 p-~~l~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~n~~l~~lp----~~~~~L~~L~Ls~n~~l~~lp~---l 457 (734)
+ ..+..+++|+.|++++|.+ ..+|..+....+|+.|+|++|.+. .+| ..+++|+.|+|++|.+.+..+. .
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 3 3566677777777777643 356655555556777777776644 333 2345677777777765543332 1
Q ss_pred CcCCceEeccCCc
Q 004707 458 PLRLRRLRAGNCK 470 (734)
Q Consensus 458 ~~~L~~L~l~~c~ 470 (734)
..+|+.|++++|.
T Consensus 271 l~~L~~L~L~~n~ 283 (477)
T 2id5_A 271 LLRLQEIQLVGGQ 283 (477)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccCCEEECCCCc
Confidence 2456666666553
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=226.62 Aligned_cols=249 Identities=17% Similarity=0.161 Sum_probs=187.4
Q ss_pred CchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCccc-CccccCC
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITEL-PSSFENL 298 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~i~~l 298 (734)
.+..+..+.++++|+|++|...+..|..|.++++|++|+|++|.+....+..+.++++|++|+|++|.++.+ |..+.++
T Consensus 48 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 48 NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 355677788888888888877666677788888888888888876555555677888888888888888865 4457888
Q ss_pred CCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEE
Q 004707 299 LGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLH 377 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~ 377 (734)
++|++|++++|.+.+..|..+.++++|++|++++|.++.+|. .+..+++|+.|++++|. +..+++..+..+++|+.|+
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceee
Confidence 888888888887777777778888888888888888887765 47788888888888754 4555555577888888888
Q ss_pred eecCCCCC-CCccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCC
Q 004707 378 LRDCAVTD-IPQEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQ 452 (734)
Q Consensus 378 Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~ 452 (734)
+++|...+ +|.......+|+.|++++|.++.+|. .+..+++|+.|+|++|.+.+..+.. .++|+.|+|++|.+.+
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 88877654 66666666688888888888888874 5678888888888888776544432 3678888888887776
Q ss_pred CCCCC---CcCCceEeccCC
Q 004707 453 SLPEL---PLRLRRLRAGNC 469 (734)
Q Consensus 453 ~lp~l---~~~L~~L~l~~c 469 (734)
..|.. .++|+.|++++|
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSS
T ss_pred ECHHHhcCcccCCEEECCCC
Confidence 55543 245667776666
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=7.8e-23 Score=236.47 Aligned_cols=264 Identities=20% Similarity=0.172 Sum_probs=199.0
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCccc-CccccCCCCCcEeeec
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITEL-PSSFENLLGLESLSVR 307 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~Ls 307 (734)
.++.|++++|...+..|..|+++++|++|+|++|.+.+..|..++++++|++|+|++|.++.+ |..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 578999999988877788999999999999999998888899999999999999999999876 6679999999999999
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccCC-ccccCCCCCcEEEcCCCCCCCccCcccCCCCCCcc--EEEeecCC--
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQLP-SSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLE--CLHLRDCA-- 382 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~--~L~Ls~n~-- 382 (734)
+|.+.+..|..++++++|++|++++|.+..++ +.+..+++|+.|++++|. +..+++..++.+++|+ .|++++|.
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccC
Confidence 99887766788999999999999999999763 344559999999999965 4444443344555555 45555544
Q ss_pred -------------------------------------------------------------------------CCCCCc-
Q 004707 383 -------------------------------------------------------------------------VTDIPQ- 388 (734)
Q Consensus 383 -------------------------------------------------------------------------l~~lp~- 388 (734)
+++++.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 444332
Q ss_pred cCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCC---CCCCCceEEecCCCCCCCCCC----CCcCC
Q 004707 389 EIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPE---LPSCLGFLNLSGCNMLQSLPE----LPLRL 461 (734)
Q Consensus 389 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~---~~~~L~~L~Ls~n~~l~~lp~----l~~~L 461 (734)
.++.+++|++|++++|.++.+|..+..+++|++|++++|.+.+..|. .+++|+.|++++|.+.+.+|. ...+|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 26667788888888888888887788888888888888877665443 246788888888877766654 24567
Q ss_pred ceEeccCCcC------------CCCCccccccccccCCCCCccc
Q 004707 462 RRLRAGNCKL------------LQSLPEIRSSVEELDASVPENL 493 (734)
Q Consensus 462 ~~L~l~~c~~------------L~~l~~l~~s~n~L~~~~p~~l 493 (734)
+.|++++|.. +..+..+.++.|.+.+..|..+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 7777776643 1223334555565554444443
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.5e-22 Score=225.46 Aligned_cols=236 Identities=22% Similarity=0.231 Sum_probs=199.8
Q ss_pred CeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC-ccccCCCCCcEeeecCC
Q 004707 231 NKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP-SSFENLLGLESLSVRGC 309 (734)
Q Consensus 231 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~Ls~~ 309 (734)
..++.++. .+..+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|.++.++ ..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCC-CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34665554 4566787553 78999999999988888889999999999999999999876 56899999999999998
Q ss_pred CCCCCCCcccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc
Q 004707 310 SKLDKLPDNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ 388 (734)
Q Consensus 310 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~ 388 (734)
.+....+..+.++++|++|++++|.+..+|. .+..+++|+.|++++|+.+..+++..+.++++|+.|+|++|+++++|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 8776666679999999999999999998876 67889999999999999999999888999999999999999999987
Q ss_pred cCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC---CcCC
Q 004707 389 EIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL---PLRL 461 (734)
Q Consensus 389 ~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l---~~~L 461 (734)
.+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|.+.+..|.. +++|+.|+|++|.+.+..+.. ..+|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 478899999999999999976 667899999999999999988766653 468999999999887544433 3456
Q ss_pred ceEeccCCc
Q 004707 462 RRLRAGNCK 470 (734)
Q Consensus 462 ~~L~l~~c~ 470 (734)
+.|++++|+
T Consensus 293 ~~L~L~~Np 301 (452)
T 3zyi_A 293 VELHLHHNP 301 (452)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 677766654
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.2e-22 Score=225.96 Aligned_cols=188 Identities=16% Similarity=0.140 Sum_probs=100.0
Q ss_pred hHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCc
Q 004707 223 EIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLE 302 (734)
Q Consensus 223 ~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 302 (734)
.+..+.++++|++++|...+ +| ++.+++|++|++++|.+.+ ++ ++++++|++|++++|.++.+| ++++++|+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence 34555566666666654333 33 5566666666666655443 22 555666666666666666554 55566666
Q ss_pred EeeecCCCCCCCCCcccCCCCccceeeccCc-ccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecC
Q 004707 303 SLSVRGCSKLDKLPDNIGNLESLAYILADGS-AISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDC 381 (734)
Q Consensus 303 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n-~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n 381 (734)
+|++++|.+.+ ++ ++++++|++|++++| .+..+ .++.+++|+.|++++|. +..+| +..+++|+.|++++|
T Consensus 131 ~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 131 YLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNKLLNRLNCDTN 201 (457)
T ss_dssp EEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCTTCCEEECCSS
T ss_pred EEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCCCCCEEECcCC
Confidence 66666655443 22 555555555555555 23333 24455555555555532 33333 444555555555555
Q ss_pred CCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCC
Q 004707 382 AVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 382 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~ 431 (734)
++++++ ++.+++|+.|++++|+++.+| ++.+++|+.|++++|++.+
T Consensus 202 ~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 202 NITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred cCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 555542 445555555555555555554 4455555555555555444
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=3.4e-22 Score=212.98 Aligned_cols=217 Identities=20% Similarity=0.279 Sum_probs=141.4
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecC
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRG 308 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~ 308 (734)
.++.|++++|...+..+..|.++++|++|+|++|.+.+..|..++++++|++|++++|.++.+|..+. ++|++|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence 45667777766555444456777777777777776666556667777777777777777777766543 5677777777
Q ss_pred CCCCCCCCcccCCCCccceeeccCcccc---cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCC
Q 004707 309 CSKLDKLPDNIGNLESLAYILADGSAIS---QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTD 385 (734)
Q Consensus 309 ~~~~~~lp~~l~~l~~L~~L~l~~n~l~---~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~ 385 (734)
|.+.+..+..+.++++|++|++++|.+. ..+..+..+++|+.|++++|. +..+|... .++|++|++++|.+++
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~---~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL---PPSLTELHLDGNKITK 206 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC---CTTCSEEECTTSCCCE
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc---cccCCEEECCCCcCCc
Confidence 6665555555677777777777777665 335556667777777776643 44455432 2667777777777766
Q ss_pred C-CccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCC
Q 004707 386 I-PQEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQ 452 (734)
Q Consensus 386 l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~ 452 (734)
+ |..++.+++|+.|++++|.++.++. .+..+++|+.|+|++|++. .+|.. .++|++|++++|++.+
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 4 4566677777777777777775544 5666777777777777654 45442 2556777777776553
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=223.36 Aligned_cols=236 Identities=22% Similarity=0.253 Sum_probs=198.7
Q ss_pred CeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC-ccccCCCCCcEeeecCC
Q 004707 231 NKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP-SSFENLLGLESLSVRGC 309 (734)
Q Consensus 231 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~Ls~~ 309 (734)
..++.++. .+..+|..+. ++++.|+|++|.+....+..+.++++|++|+|++|.++.++ ..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45666553 5667887664 78999999999888777788999999999999999999886 45899999999999998
Q ss_pred CCCCCCCcccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc
Q 004707 310 SKLDKLPDNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ 388 (734)
Q Consensus 310 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~ 388 (734)
.+....+..+..+++|++|++++|.+..+|. .+..+++|+.|++++|+.+..+++..+.++++|++|+|++|+++++|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 7766556679999999999999999998876 678899999999999999999998889999999999999999999984
Q ss_pred cCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC---CcCC
Q 004707 389 EIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL---PLRL 461 (734)
Q Consensus 389 ~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l---~~~L 461 (734)
+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++.+..+.. +++|+.|+|++|.+.+..+.. ..+|
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred -cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 78899999999999999976 668899999999999999987766643 478999999999887544433 3456
Q ss_pred ceEeccCCc
Q 004707 462 RRLRAGNCK 470 (734)
Q Consensus 462 ~~L~l~~c~ 470 (734)
+.|++++|+
T Consensus 282 ~~L~L~~Np 290 (440)
T 3zyj_A 282 ERIHLHHNP 290 (440)
T ss_dssp CEEECCSSC
T ss_pred CEEEcCCCC
Confidence 667666654
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.5e-22 Score=216.08 Aligned_cols=236 Identities=19% Similarity=0.228 Sum_probs=169.1
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeec
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVR 307 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls 307 (734)
..++.|++++|...+..|..|.++++|++|++++|.+.+..|..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 357778888887665556678888888888888887776667778888888888888888888877654 788888888
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccc---cCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAIS---QLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVT 384 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~---~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~ 384 (734)
+|.+.+..+..++++++|++|++++|.++ ..|..+..+ +|+.|++++|. +..+|... .++|++|++++|.++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~---~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDL---PETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSS---CSSCSCCBCCSSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccc---cCCCCEEECCCCcCC
Confidence 87766555556788888888888888876 345555666 78888887754 45566542 267788888888887
Q ss_pred CCC-ccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC--
Q 004707 385 DIP-QEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL-- 457 (734)
Q Consensus 385 ~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l-- 457 (734)
+++ ..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|++. .+|.. .++|+.|++++|++.+.-+..
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 754 567778888888888888876654 5777788888888887755 55543 356788888888765432221
Q ss_pred -------CcCCceEeccCCcC
Q 004707 458 -------PLRLRRLRAGNCKL 471 (734)
Q Consensus 458 -------~~~L~~L~l~~c~~ 471 (734)
..+++.|++.+|+.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSS
T ss_pred ccccccccccccceEeecCcc
Confidence 23466777777664
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.3e-22 Score=214.27 Aligned_cols=225 Identities=17% Similarity=0.216 Sum_probs=194.3
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLL 299 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~ 299 (734)
+..+..+.++++|++++|...+..|..|.++++|++|++++|.+. .+|..+. ++|++|++++|.++.++.. +.+++
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 69 DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN 145 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCc
Confidence 446778899999999999887777889999999999999998754 6666554 7999999999999988765 89999
Q ss_pred CCcEeeecCCCCCC--CCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEE
Q 004707 300 GLESLSVRGCSKLD--KLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLH 377 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~--~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~ 377 (734)
+|++|++++|.+.. ..+..+.++++|++|++++|.++.+|..+. ++|+.|++++|. +..+++..+..+++|+.|+
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEE
T ss_pred cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEE
Confidence 99999999988753 677889999999999999999999998775 899999999975 5566555589999999999
Q ss_pred eecCCCCCCC-ccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCC---------CCCCceEEecC
Q 004707 378 LRDCAVTDIP-QEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPEL---------PSCLGFLNLSG 447 (734)
Q Consensus 378 Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~---------~~~L~~L~Ls~ 447 (734)
|++|.+++++ ..++.+++|+.|++++|.++.+|.++..+++|+.|++++|++.+..+.. ...|+.|++++
T Consensus 223 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp CCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred CCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 9999999865 4788999999999999999999999999999999999999976543332 25688899999
Q ss_pred CCCC
Q 004707 448 CNML 451 (734)
Q Consensus 448 n~~l 451 (734)
|++.
T Consensus 303 N~~~ 306 (330)
T 1xku_A 303 NPVQ 306 (330)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 9864
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2.4e-22 Score=229.41 Aligned_cols=259 Identities=22% Similarity=0.182 Sum_probs=206.3
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeee
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSV 306 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L 306 (734)
..+++|++++|...+..|..|.++++|++|++++|.+.+..|..++++++|++|++++|.++.+|+. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5789999999987777788899999999999999998888888999999999999999999988876 999999999999
Q ss_pred cCCCCCC-CCCcccCCCCccceeeccCcc-cccCC-ccccCCCCCcEEEcCCCCCCCccCcccCC---------------
Q 004707 307 RGCSKLD-KLPDNIGNLESLAYILADGSA-ISQLP-SSVADSNVLRYLWFPRCRNLVSLPPLLLS--------------- 368 (734)
Q Consensus 307 s~~~~~~-~lp~~l~~l~~L~~L~l~~n~-l~~lp-~~i~~l~~L~~L~l~~~~~l~~l~~~~l~--------------- 368 (734)
++|.+.+ ..|..++++++|++|++++|. +..+| ..+..+++|++|++++|...+..|.. +.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcc
Confidence 9998776 467889999999999999998 66776 57899999999999987644333322 22
Q ss_pred ---------CCCCccEEEeecCCCCCC-----------------------------------------------------
Q 004707 369 ---------GLSSLECLHLRDCAVTDI----------------------------------------------------- 386 (734)
Q Consensus 369 ---------~l~~L~~L~Ls~n~l~~l----------------------------------------------------- 386 (734)
.+++|+.|++++|+++++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 245666666666655432
Q ss_pred -------------------------------------------------------------CccC-CCCCCCcEEeeccC
Q 004707 387 -------------------------------------------------------------PQEI-GCLSSLEELDLSGN 404 (734)
Q Consensus 387 -------------------------------------------------------------p~~l-~~l~~L~~L~Ls~n 404 (734)
|..+ +.+++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 2222 24788999999999
Q ss_pred CCCc-cc---ccccCCCCCcEEeeecCCCCCCC-----CCCCCCCceEEecCCCCCCCCCC---CCcCCceEeccCCcCC
Q 004707 405 SFES-LP---VSIKQLSQLSSLDLSDCNMLRSL-----PELPSCLGFLNLSGCNMLQSLPE---LPLRLRRLRAGNCKLL 472 (734)
Q Consensus 405 ~l~~-lp---~~l~~l~~L~~L~L~~n~~l~~l-----p~~~~~L~~L~Ls~n~~l~~lp~---l~~~L~~L~l~~c~~L 472 (734)
.++. +| ..++.+++|+.|+|++|++.+.. ...+++|+.|++++|.+. .+|. .+.+|+.|++++|..-
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 9984 43 34788999999999999875422 235688999999999877 6775 3468999999998732
Q ss_pred -------CCCccccccccccCCC
Q 004707 473 -------QSLPEIRSSVEELDAS 488 (734)
Q Consensus 473 -------~~l~~l~~s~n~L~~~ 488 (734)
..+..++++.|++++.
T Consensus 424 ~l~~~~~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 424 VVKTCIPQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp CCCTTSCTTCSEEECCSSCCSCC
T ss_pred cccchhcCCceEEECCCCChhhh
Confidence 2444577888888764
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.4e-22 Score=213.44 Aligned_cols=203 Identities=23% Similarity=0.236 Sum_probs=92.0
Q ss_pred hcCeeecCCccccccccc-cccCCCCCcEEEecCCcCCC--cCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEee
Q 004707 229 KHNKLDLRDCRRLKRIST-RFCKLKSLVDLFLHGCLNLE--RFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLS 305 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~-~~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 305 (734)
.+++|++++|... .+|. .|.++++|++|+|++|.+.. ..|..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3444555554432 2222 24455555555555544321 123344445555555555555555544455555555555
Q ss_pred ecCCCCCCCCC-cccCCCCccceeeccCccccc-CCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCC
Q 004707 306 VRGCSKLDKLP-DNIGNLESLAYILADGSAISQ-LPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAV 383 (734)
Q Consensus 306 Ls~~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l 383 (734)
+++|.+.+..+ ..+..+++|++|++++|.+.. .|..+..+++|+.|++++|.......+..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 55544333222 234445555555555554442 2233444455555555544322211111244455555555555555
Q ss_pred CCC-CccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCCC
Q 004707 384 TDI-PQEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLRS 432 (734)
Q Consensus 384 ~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~~ 432 (734)
+++ |..++.+++|+.|++++|.++.++. .+..+++|+.|+|++|++.+.
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 443 3344445555555555555544433 344445555555555544443
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.5e-21 Score=209.47 Aligned_cols=236 Identities=21% Similarity=0.338 Sum_probs=184.2
Q ss_pred hhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCC
Q 004707 222 KEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGL 301 (734)
Q Consensus 222 ~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L 301 (734)
..+..+.++++|++++|.. ..+|. +..+++|++|++++|.+.. ++ .+..+++|++|++++|.++.+|. +..+++|
T Consensus 60 ~~~~~~~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp TTGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhhcCCccEEEccCCcc-ccchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 3467778888899988854 44555 8888899999998886544 44 57888899999999988888876 8888899
Q ss_pred cEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecC
Q 004707 302 ESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDC 381 (734)
Q Consensus 302 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n 381 (734)
++|++++|.....++. +..+++|++|++++|.+..++. +..+++|+.|++++|. +..+++ +..+++|+.|++++|
T Consensus 135 ~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVN 209 (347)
T ss_dssp CEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSS
T ss_pred eEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccC
Confidence 9999988877776665 8888899999999888887776 7888889999998864 455554 677888888888888
Q ss_pred CCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCC--CCCCCCceEEecCCCCCCCCCC--C
Q 004707 382 AVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLP--ELPSCLGFLNLSGCNMLQSLPE--L 457 (734)
Q Consensus 382 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp--~~~~~L~~L~Ls~n~~l~~lp~--l 457 (734)
.+.+++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|.+.+ ++ ..+++|+.|++++|.+.+ +|. .
T Consensus 210 ~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~-~~~~~~ 285 (347)
T 4fmz_A 210 QITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISD-ISVLNN 285 (347)
T ss_dssp CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-CGGGGG
T ss_pred CCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCC-ChhhcC
Confidence 8887655 7778888999999888888876 8888889999998887654 33 234678888998887654 343 3
Q ss_pred CcCCceEeccCCcC
Q 004707 458 PLRLRRLRAGNCKL 471 (734)
Q Consensus 458 ~~~L~~L~l~~c~~ 471 (734)
+++|+.|++++|..
T Consensus 286 l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 286 LSQLNSLFLNNNQL 299 (347)
T ss_dssp CTTCSEEECCSSCC
T ss_pred CCCCCEEECcCCcC
Confidence 46788888888864
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2e-22 Score=224.03 Aligned_cols=234 Identities=24% Similarity=0.331 Sum_probs=174.2
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecC
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRG 308 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~ 308 (734)
.++.|++++|. ++.+|. -.++|+.|++++|.+.+ +|.. +++|++|++++|.++.+|.. .++|++|++++
T Consensus 72 ~l~~L~l~~~~-l~~lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 72 QAHELELNNLG-LSSLPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN 140 (454)
T ss_dssp TCSEEECTTSC-CSCCCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred CCCEEEecCCc-cccCCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcC
Confidence 45778888876 344555 23678888888877655 6643 36788888888888877642 26888999988
Q ss_pred CCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc
Q 004707 309 CSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ 388 (734)
Q Consensus 309 ~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~ 388 (734)
|.+.+ +| .++++++|++|++++|.++.+|..+ .+|++|++++|. +..+|. ++++++|+.|++++|.++++|.
T Consensus 141 n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 141 NQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCCcCCC
Confidence 87664 77 4888899999999999888887654 588888888864 455663 7888889999999988888776
Q ss_pred cCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCCCcCCceEeccC
Q 004707 389 EIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPELPLRLRRLRAGN 468 (734)
Q Consensus 389 ~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~~ 468 (734)
. .++|++|++++|.++.+| .++.+++|+.|++++|++.+ +|..+++|+.|++++|.+.+ +|..+.+|+.|++++
T Consensus 213 ~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 213 L---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSE 286 (454)
T ss_dssp C---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred C---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccc-cCcccCcCCEEECcC
Confidence 4 358888888888888888 48888888999988887654 67777888888888887764 777777888888887
Q ss_pred CcCCC------CCccccccccccCC
Q 004707 469 CKLLQ------SLPEIRSSVEELDA 487 (734)
Q Consensus 469 c~~L~------~l~~l~~s~n~L~~ 487 (734)
|..-+ .+..++.+.|.+++
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~ 311 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRS 311 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSE
T ss_pred CccCcccCcCCcCCEEECcCCcCCc
Confidence 75322 22334555565544
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=8.4e-22 Score=236.35 Aligned_cols=230 Identities=19% Similarity=0.213 Sum_probs=139.4
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchh--hhCCCcCcEEEeecCCCcccC--cccc
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEI--LEKMEHLKHIYLQRTAITELP--SSFE 296 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~--~~~l~~L~~L~L~~n~l~~lp--~~i~ 296 (734)
+..+..+.+|++|+|++|...+..|..|.++++|++|+|++|.+.+.+|.. ++++++|++|+|++|.++.++ ..++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 556677778888888888777777777888888888888888777665554 777888888888888877553 4577
Q ss_pred CCCCCcEeeecCCCCCCCCCcccCCC--Cc------------------------------cceeeccCcccc-cCCcccc
Q 004707 297 NLLGLESLSVRGCSKLDKLPDNIGNL--ES------------------------------LAYILADGSAIS-QLPSSVA 343 (734)
Q Consensus 297 ~l~~L~~L~Ls~~~~~~~lp~~l~~l--~~------------------------------L~~L~l~~n~l~-~lp~~i~ 343 (734)
++++|++|++++|.+.+..|..++.+ ++ |+.|++++|.+. .+|..+.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 88888888888877666555544433 33 444444444322 1111110
Q ss_pred ------------------------------------C--CCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCC
Q 004707 344 ------------------------------------D--SNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTD 385 (734)
Q Consensus 344 ------------------------------------~--l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~ 385 (734)
. .++|+.|++++|. +..+++..+..+++|+.|+|++|++.+
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCC
Confidence 0 1345555555533 233333345666666666666666665
Q ss_pred C-CccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCC
Q 004707 386 I-PQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNML 451 (734)
Q Consensus 386 l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l 451 (734)
+ |..++.+++|++|+|++|.++.+ |..+..+++|+.|++++|.+.+..+.. .++|+.|++++|.+.
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 3 44566666666666666666644 445566666666666666554333321 345556666655443
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=8.4e-22 Score=210.15 Aligned_cols=237 Identities=18% Similarity=0.224 Sum_probs=192.5
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCccc-CccccCCCCCcEeeec
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITEL-PSSFENLLGLESLSVR 307 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~Ls 307 (734)
.++.++++++. +..+|..+ .++|+.|++++|.+.+..|..+.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 57789998875 45777765 37899999999987776677899999999999999999977 6679999999999999
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCCCCC-ccCcccCCCCCCccEEEeecCCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCRNLV-SLPPLLLSGLSSLECLHLRDCAVTD 385 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~-~l~~~~l~~l~~L~~L~Ls~n~l~~ 385 (734)
+|.+. .+|..+. ++|++|++++|.+..+|.. +..+++|+.|++++|.... ...+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 97654 6777665 8999999999999988764 7889999999999876432 2444446777 99999999999999
Q ss_pred CCccCCCCCCCcEEeeccCCCCccc-ccccCCCCCcEEeeecCCCCCCCCC---CCCCCceEEecCCCCCCCCCCC---C
Q 004707 386 IPQEIGCLSSLEELDLSGNSFESLP-VSIKQLSQLSSLDLSDCNMLRSLPE---LPSCLGFLNLSGCNMLQSLPEL---P 458 (734)
Q Consensus 386 lp~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~~l~~lp~---~~~~L~~L~Ls~n~~l~~lp~l---~ 458 (734)
+|..+. ++|++|++++|.++.++ ..+..+++|+.|+|++|.+.+..+. .+++|+.|++++|.+. .+|.. .
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 988764 79999999999999776 5788999999999999988776553 3478999999999877 66653 3
Q ss_pred cCCceEeccCCcCCCCCc
Q 004707 459 LRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 459 ~~L~~L~l~~c~~L~~l~ 476 (734)
++|+.|++++|. ++.++
T Consensus 264 ~~L~~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 264 KLLQVVYLHTNN-ITKVG 280 (332)
T ss_dssp TTCCEEECCSSC-CCBCC
T ss_pred ccCCEEECCCCC-CCccC
Confidence 578899998875 44444
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.3e-21 Score=226.27 Aligned_cols=130 Identities=21% Similarity=0.162 Sum_probs=119.7
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCccc-CccccCCCCCcEeee
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITEL-PSSFENLLGLESLSV 306 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L 306 (734)
..+++|++++|...+..+..|.++++|++|+|++|.+.+..|..+.++++|++|+|++|.++.+ |..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 5789999999988777777899999999999999988887888999999999999999999987 778999999999999
Q ss_pred cCCCCCCCCCcccCCCCccceeeccCcccc--cCCccccCCCCCcEEEcCCCC
Q 004707 307 RGCSKLDKLPDNIGNLESLAYILADGSAIS--QLPSSVADSNVLRYLWFPRCR 357 (734)
Q Consensus 307 s~~~~~~~lp~~l~~l~~L~~L~l~~n~l~--~lp~~i~~l~~L~~L~l~~~~ 357 (734)
++|.+.+..|..++++++|++|++++|.+. .+|..++++++|++|++++|.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 999887777788999999999999999998 579999999999999999875
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=231.83 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=89.5
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENLL 299 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l~ 299 (734)
+..+..+.++++|++++|...+..|..|.++++|++|+|++|.+.+..|..++++++|++|++++|.++.+|. .+++++
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 3456677778888888886665556677888888888888887666666778888888888888888887765 477888
Q ss_pred CCcEeeecCCCCCC-CCCcccCCCCccceeeccCcccccC
Q 004707 300 GLESLSVRGCSKLD-KLPDNIGNLESLAYILADGSAISQL 338 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~-~lp~~l~~l~~L~~L~l~~n~l~~l 338 (734)
+|++|++++|.+.+ .+|..++++++|++|++++|.+..+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 88888888877665 4677788888888888887776644
No 42
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=9e-23 Score=235.22 Aligned_cols=192 Identities=22% Similarity=0.330 Sum_probs=157.9
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhhcCCCceEEC---CCCCHHHHHHHHHHhhcCCCCCch
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLENFGVEKIYRV---NGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~~~~~~y~v---~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
||+||||||||+.++++. +++|++||||||++.++..++ ...|+| ++|+.+||++||...++. +..
T Consensus 236 ~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~---~~~ 304 (591)
T 1z6t_A 236 PRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNM---KKA 304 (591)
T ss_dssp TTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTS---CGG
T ss_pred CCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCC---Ccc
Confidence 469999999999888764 368999999999999987754 456666 589999999999999975 233
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHHhhcC-CcccHHHHHHHhhhhcCCC--------chhHHHHHHhhcccCChhhhhhhh
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDDLNRICESD--------IHDIHDILKISFNELMPKMKSIFL 148 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vlgs~L~-~~~~W~~~l~~l~~~~~~~--------i~~i~~~L~~Syd~L~~~~k~~fl 148 (734)
+..+.+++|+++|+|+||||+.+|+.++ ...+|+.+++.+....... ...+..++..||+.||++.|.||+
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~ 384 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYT 384 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4456789999999999999999999999 6668999999887654322 235799999999999999999999
Q ss_pred hhcccccCCCh--hHHHHHHHhh---ccchhHHHhhcCCceeeC----CeEEecHHHHHHHHHH
Q 004707 149 DIACFFEGEDK--DFVTRILDDY---GSYGLEVLIDKSLITVSH----NCLRMHDLLQEMGREI 203 (734)
Q Consensus 149 ~ia~f~~~~~~--~~~~~~l~~~---~~~~i~~L~~ksli~~~~----~~~~mHdll~~~~~~i 203 (734)
++||||+|..+ +.+..++... ....+..|+++|||+... ..++||+++++++++.
T Consensus 385 ~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 385 DLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99999998655 4555655432 367899999999998762 2799999999988776
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1e-22 Score=212.30 Aligned_cols=217 Identities=21% Similarity=0.315 Sum_probs=139.2
Q ss_pred eeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCccc-CccccCCCCCcEeeecCCC
Q 004707 232 KLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITEL-PSSFENLLGLESLSVRGCS 310 (734)
Q Consensus 232 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~Ls~~~ 310 (734)
+++.+++ .+..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 15 ~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4555543 234455433 45677777777666555555667777777777777777765 4556777777777777765
Q ss_pred CCCCC-CcccCCCCccceeeccCcccccC-CccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc
Q 004707 311 KLDKL-PDNIGNLESLAYILADGSAISQL-PSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ 388 (734)
Q Consensus 311 ~~~~l-p~~l~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~ 388 (734)
.++.+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+++..+..+++|++|+|++|+++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCH
Confidence 33333 56667777777777777777655 4456667777777777643 445555546667777777777777776554
Q ss_pred -cCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCC---CCCCCceEEecCCCCCC
Q 004707 389 -EIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPE---LPSCLGFLNLSGCNMLQ 452 (734)
Q Consensus 389 -~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~---~~~~L~~L~Ls~n~~l~ 452 (734)
.+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+..+. ..++|+.|++++|++..
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 366677777777777777754 55666777777777777766553332 34567777777776554
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1e-21 Score=224.97 Aligned_cols=131 Identities=24% Similarity=0.216 Sum_probs=107.4
Q ss_pred cCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCC---ccCCCCCCCcEEeeccCCCCc-cccc-ccCCC
Q 004707 343 ADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIP---QEIGCLSSLEELDLSGNSFES-LPVS-IKQLS 417 (734)
Q Consensus 343 ~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~ 417 (734)
..+++|++|++++|......|.. +.++++|++|++++|++++++ ..++.+++|+.|++++|.++. +|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 56788999999987655545554 889999999999999999765 568999999999999999997 8875 68899
Q ss_pred CCcEEeeecCCCCCCCCCCC-CCCceEEecCCCCCCCCCCC---CcCCceEeccCCcCCCCCc
Q 004707 418 QLSSLDLSDCNMLRSLPELP-SCLGFLNLSGCNMLQSLPEL---PLRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 418 ~L~~L~L~~n~~l~~lp~~~-~~L~~L~Ls~n~~l~~lp~l---~~~L~~L~l~~c~~L~~l~ 476 (734)
+|+.|++++|++.+.+|... ++|+.|++++|.+. .+|.. .++|+.|++++|. ++.+|
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~-l~~l~ 489 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ-LKSVP 489 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC-CCCCC
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC-CCCCC
Confidence 99999999999988877665 69999999999776 66653 3567788887764 33455
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5.2e-22 Score=209.15 Aligned_cols=235 Identities=21% Similarity=0.209 Sum_probs=194.2
Q ss_pred CeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCccc---CccccCCCCCcEeeec
Q 004707 231 NKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITEL---PSSFENLLGLESLSVR 307 (734)
Q Consensus 231 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l---p~~i~~l~~L~~L~Ls 307 (734)
+.++.+++ .+..+|..+ .++|++|+|++|.+....+..+.++++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~-~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCC-CcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 35677665 456677655 37999999999987644445578999999999999999865 5667789999999999
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccCCc--cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQLPS--SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTD 385 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~ 385 (734)
+|.+. .+|..+..+++|++|++++|.+..++. .+..+++|++|++++|.. ...++..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCcccc
Confidence 98654 678889999999999999999998875 789999999999999764 44444458899999999999999986
Q ss_pred --CCccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCC---CCCCCceEEecCCCCCCCCCC---
Q 004707 386 --IPQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPE---LPSCLGFLNLSGCNMLQSLPE--- 456 (734)
Q Consensus 386 --lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~---~~~~L~~L~Ls~n~~l~~lp~--- 456 (734)
+|..++.+++|+.|++++|.++.+ |..+..+++|+.|+|++|.+.+..+. ..++|+.|++++|.+.+..|.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 788999999999999999999977 66889999999999999998765442 347899999999998876664
Q ss_pred -CCcCCceEeccCCc
Q 004707 457 -LPLRLRRLRAGNCK 470 (734)
Q Consensus 457 -l~~~L~~L~l~~c~ 470 (734)
++.+|+.|++++|+
T Consensus 245 ~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 245 HFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCTTCCEEECTTCC
T ss_pred hhhccCCEEEccCCC
Confidence 33467777777665
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=3e-21 Score=214.56 Aligned_cols=243 Identities=28% Similarity=0.365 Sum_probs=150.0
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeec
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVR 307 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls 307 (734)
.++++|++++|...+ +| .|+++++|++|++++|.+.+ +|..+ .+|++|++++|.++.+| .++++++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 356666776665443 55 36667777777776665443 44432 36667777777666666 46667777777777
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIP 387 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp 387 (734)
+|.+.+ +|... ++|++|++++|.+..+|. ++.+++|+.|++++|. +..+|.. +++|+.|++++|.++++|
T Consensus 204 ~N~l~~-l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 204 NNSLKK-LPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNL-LKTLPDL----PPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp SSCCSS-CCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSC----CTTCCEEECCSSCCSCCC
T ss_pred CCcCCc-CCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCc-CCccccc----ccccCEEECCCCcccccC
Confidence 665443 44322 466677777776666663 6667777777776643 3344431 356777777777766666
Q ss_pred ccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCCCcCCceEecc
Q 004707 388 QEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPELPLRLRRLRAG 467 (734)
Q Consensus 388 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~ 467 (734)
.. +++|+.|++++|.++.+|.. .++|+.|++++|.+.+ ++..+++|+.|++++|.+.+ +|..+.+|+.|+++
T Consensus 274 ~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~ 345 (454)
T 1jl5_A 274 EL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPALPPRLERLIAS 345 (454)
T ss_dssp CC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECC
T ss_pred cc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-ccccCCcCCEEECC
Confidence 53 36677777777777665532 2567777777776544 45555678888888877664 67767778888887
Q ss_pred CCcCCCCCc-------cccccccccCC--CCCcccccC
Q 004707 468 NCKLLQSLP-------EIRSSVEELDA--SVPENLSKY 496 (734)
Q Consensus 468 ~c~~L~~l~-------~l~~s~n~L~~--~~p~~l~~l 496 (734)
+|. ++.+| .++++.|.+++ .+|.++..+
T Consensus 346 ~N~-l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 346 FNH-LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp SSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred CCc-cccccchhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 774 33444 34455566655 555555443
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=8.5e-22 Score=214.98 Aligned_cols=242 Identities=15% Similarity=0.094 Sum_probs=193.0
Q ss_pred CchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCC
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENL 298 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l 298 (734)
.+..+..+.++++|++++|...+..|..|.++++|++|+|++|.+....+..+.++++|++|++++|.++.++. .+.++
T Consensus 85 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 164 (390)
T 3o6n_A 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence 34567888899999999998777777788999999999999997664444456899999999999999998754 48999
Q ss_pred CCCcEeeecCCCCCCCCCcccCCCC-------------------ccceeeccCcccccCCccccCCCCCcEEEcCCCCCC
Q 004707 299 LGLESLSVRGCSKLDKLPDNIGNLE-------------------SLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNL 359 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~l~~l~-------------------~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l 359 (734)
++|++|++++|.+.+.- ++.++ +|++|++++|.+..+|.. ..++|+.|++++|..
T Consensus 165 ~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l- 238 (390)
T 3o6n_A 165 TSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNL- 238 (390)
T ss_dssp TTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCC-
T ss_pred CCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCC-
Confidence 99999999998765432 23334 455556666666655543 347899999999754
Q ss_pred CccCcccCCCCCCccEEEeecCCCCCC-CccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCC--
Q 004707 360 VSLPPLLLSGLSSLECLHLRDCAVTDI-PQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPEL-- 436 (734)
Q Consensus 360 ~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~-- 436 (734)
...+ .+..+++|++|++++|.+.++ |..++.+++|+.|++++|+++.+|..+..+++|+.|+|++|++. .+|..
T Consensus 239 ~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 239 TDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp CCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred cccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence 4443 378899999999999999984 78899999999999999999999988889999999999999866 45532
Q ss_pred -CCCCceEEecCCCCCCCCCCCCcCCceEeccCCc
Q 004707 437 -PSCLGFLNLSGCNMLQSLPELPLRLRRLRAGNCK 470 (734)
Q Consensus 437 -~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~~c~ 470 (734)
+++|+.|++++|++...-....++|+.|++++|+
T Consensus 316 ~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp HHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred ccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 3789999999998875444455678888887775
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=2.4e-21 Score=227.13 Aligned_cols=275 Identities=19% Similarity=0.177 Sum_probs=173.5
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC-ccccCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP-SSFENLL 299 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~ 299 (734)
+..+..+.++++|++++|...+..|..|+++++|++|+|++|.+.+..+..++++++|++|++++|.++.+| ..+++++
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 445677777888888887776666777778888888888887655444446777888888888888887776 4577888
Q ss_pred CCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCcc---ccCCCCCcEEEcCCCCCCCccCcc-----------
Q 004707 300 GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS---VADSNVLRYLWFPRCRNLVSLPPL----------- 365 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~---i~~l~~L~~L~l~~~~~l~~l~~~----------- 365 (734)
+|++|++++|.+.+..|..++++++|++|++++|.++.++.. ...+++|+.|++++|.. ..+++.
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC-CCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc-cccChhhhhhhhhhhhh
Confidence 888888888777777777777788888888888777766543 22446677777766532 222221
Q ss_pred ----------------------------------------cCCCCC--CccEEEeecCCCCCC-CccCCCCCCCcEEeec
Q 004707 366 ----------------------------------------LLSGLS--SLECLHLRDCAVTDI-PQEIGCLSSLEELDLS 402 (734)
Q Consensus 366 ----------------------------------------~l~~l~--~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls 402 (734)
.+.+++ +|++|++++|.++++ |..++.+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 122222 266666666666653 3446666666666666
Q ss_pred cCCCCcc-cccccCCCCCcEEeeecCCCCC-----CCCC-------CCCCCceEEecCCCCCCCCCCC---CcCCceEec
Q 004707 403 GNSFESL-PVSIKQLSQLSSLDLSDCNMLR-----SLPE-------LPSCLGFLNLSGCNMLQSLPEL---PLRLRRLRA 466 (734)
Q Consensus 403 ~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~-----~lp~-------~~~~L~~L~Ls~n~~l~~lp~l---~~~L~~L~l 466 (734)
+|.++.+ |..+..+++|+.|++++|...+ .+|. ..++|+.|++++|.+.+..|.. ..+|++|++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 6666643 3355666666666666554332 2221 2356788888888777655442 356778887
Q ss_pred cCCcC-C-------------CCCccccccccccCCCCCcccccC
Q 004707 467 GNCKL-L-------------QSLPEIRSSVEELDASVPENLSKY 496 (734)
Q Consensus 467 ~~c~~-L-------------~~l~~l~~s~n~L~~~~p~~l~~l 496 (734)
++|.. + ..+..++++.|.+++..|..+..+
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 77641 1 133344556666665555444433
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.5e-21 Score=217.51 Aligned_cols=221 Identities=21% Similarity=0.190 Sum_probs=193.9
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeee
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSV 306 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L 306 (734)
..++.|+|++|...+..|..|.++++|+.|+|++|.+.+..|..+.++++|++|+|++|.++.+|.. +.++++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4688999999988888888899999999999999988887888999999999999999999998876 889999999999
Q ss_pred cCCCCCCCCCcccCCCCccceeeccC-cccccCCc-cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCC
Q 004707 307 RGCSKLDKLPDNIGNLESLAYILADG-SAISQLPS-SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVT 384 (734)
Q Consensus 307 s~~~~~~~lp~~l~~l~~L~~L~l~~-n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~ 384 (734)
++|.+....+..+.++++|++|++++ +.+..++. .+..+++|+.|++++|+ +..+|. +..+++|+.|+|++|.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEECcCCcCc
Confidence 99987766666899999999999998 66777765 58899999999999964 566665 789999999999999999
Q ss_pred CC-CccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCC
Q 004707 385 DI-PQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNML 451 (734)
Q Consensus 385 ~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l 451 (734)
++ |..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++.+..+.. .++|+.|+|++|++.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 85 67799999999999999999976 557899999999999999887655443 478999999999754
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=9.9e-22 Score=226.65 Aligned_cols=246 Identities=15% Similarity=0.082 Sum_probs=196.4
Q ss_pred CchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCC
Q 004707 220 DPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENL 298 (734)
Q Consensus 220 ~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l 298 (734)
.+..+..+..+++|+|++|...+..|..|+++++|++|+|++|.+.+..+..++++++|++|+|++|.++.+++ .++++
T Consensus 91 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 91 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 35577888999999999998877777778999999999999998775555567999999999999999997765 58999
Q ss_pred CCCcEeeecCCCCCCCCCccc----------------CCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCcc
Q 004707 299 LGLESLSVRGCSKLDKLPDNI----------------GNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSL 362 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~l----------------~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l 362 (734)
++|++|++++|.+.+.-+..+ ...++|+.|++++|.+..+|..+ .++|+.|++++|... ..
T Consensus 171 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~-~~ 247 (597)
T 3oja_B 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT-DT 247 (597)
T ss_dssp TTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC-CC
T ss_pred CcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCC-CC
Confidence 999999999987665322211 12234555555555555555433 368999999997644 33
Q ss_pred CcccCCCCCCccEEEeecCCCCC-CCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCC---CC
Q 004707 363 PPLLLSGLSSLECLHLRDCAVTD-IPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPEL---PS 438 (734)
Q Consensus 363 ~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~---~~ 438 (734)
+ .+..+++|+.|+|++|.+.+ .|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+. .+|.. ++
T Consensus 248 -~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~ 324 (597)
T 3oja_B 248 -A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324 (597)
T ss_dssp -G-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred -h-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCC
Confidence 2 37889999999999999998 478899999999999999999999988888999999999999876 45543 47
Q ss_pred CCceEEecCCCCCCCCCCCCcCCceEeccCCcC
Q 004707 439 CLGFLNLSGCNMLQSLPELPLRLRRLRAGNCKL 471 (734)
Q Consensus 439 ~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~~c~~ 471 (734)
+|+.|+|++|.+.+.-+..+++|+.|++++|+.
T Consensus 325 ~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 325 RLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 899999999998765555667888898888763
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=234.33 Aligned_cols=243 Identities=21% Similarity=0.150 Sum_probs=173.0
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcC-chhhhCCCcCcEEEeecCCCccc-CccccCCCCCcEee
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERF-PEILEKMEHLKHIYLQRTAITEL-PSSFENLLGLESLS 305 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~ 305 (734)
.+++.|+|++|...+..|..|.++++|++|+|++|...+.+ |..++++++|++|+|++|.++.+ |..|+++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 46778888888777777777888888888888888666665 67788888888888888888865 66788888888888
Q ss_pred ecCCCCCCCCCcc--cCCCCccceeeccCcccccC--CccccCCCCCcEEEcCCCCCCCccCcc----------------
Q 004707 306 VRGCSKLDKLPDN--IGNLESLAYILADGSAISQL--PSSVADSNVLRYLWFPRCRNLVSLPPL---------------- 365 (734)
Q Consensus 306 Ls~~~~~~~lp~~--l~~l~~L~~L~l~~n~l~~l--p~~i~~l~~L~~L~l~~~~~l~~l~~~---------------- 365 (734)
|++|.+.+.+|.. ++++++|++|++++|.+..+ +..++++++|+.|++++|......+..
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 8888777766654 78888888888888888755 346788888888888876532221111
Q ss_pred ---------cCCCCC------CccEEEeecCCCCC-CCccC------------------------------------CC-
Q 004707 366 ---------LLSGLS------SLECLHLRDCAVTD-IPQEI------------------------------------GC- 392 (734)
Q Consensus 366 ---------~l~~l~------~L~~L~Ls~n~l~~-lp~~l------------------------------------~~- 392 (734)
.+..+. +|+.|++++|.+.. +|..+ ..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 122222 27777777776542 22111 11
Q ss_pred -CCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC---CcCCceE
Q 004707 393 -LSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL---PLRLRRL 464 (734)
Q Consensus 393 -l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l---~~~L~~L 464 (734)
.++|+.|++++|.++.+ |..+..+++|+.|+|++|.+.+..|.. +++|+.|++++|.+.+..|.. .++|+.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 25788888888888755 456788888889999888887766643 367888999988876655542 3578888
Q ss_pred eccCCc
Q 004707 465 RAGNCK 470 (734)
Q Consensus 465 ~l~~c~ 470 (734)
++++|.
T Consensus 344 ~L~~N~ 349 (844)
T 3j0a_A 344 DLQKNH 349 (844)
T ss_dssp ECCSCC
T ss_pred ECCCCC
Confidence 888763
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=2e-20 Score=214.69 Aligned_cols=220 Identities=27% Similarity=0.294 Sum_probs=181.2
Q ss_pred HhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeee
Q 004707 227 VLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSV 306 (734)
Q Consensus 227 l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L 306 (734)
...++.|++++|.. +.+|..+. ++|+.|+|++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|++
T Consensus 39 ~~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 39 NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCCcEEEecCCCc-CccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 34578899998865 47887664 89999999998754 6666 57899999999999999997 7899999999
Q ss_pred cCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC
Q 004707 307 RGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI 386 (734)
Q Consensus 307 s~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l 386 (734)
++|.+. .+|. .+++|+.|++++|.++.+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.++.+
T Consensus 109 s~N~l~-~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLT-HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCC-CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred cCCcCC-CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC
Confidence 997654 4665 578899999999999999875 489999999986 4556654 357899999999999998
Q ss_pred CccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCCCcCCceEec
Q 004707 387 PQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPELPLRLRRLRA 466 (734)
Q Consensus 387 p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l 466 (734)
| ..+++|+.|++++|.++.+|.. +++|+.|++++|.+. .+|..+++|+.|++++|.+.+ +|..+++|+.|++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~L 248 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTS-LPVLPSELKELMV 248 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEEC
T ss_pred c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCc-CCCCCCcCcEEEC
Confidence 8 4578999999999999998864 478999999998755 677788899999999997764 7788889999999
Q ss_pred cCCcCCCCCcc
Q 004707 467 GNCKLLQSLPE 477 (734)
Q Consensus 467 ~~c~~L~~l~~ 477 (734)
++| .++.+|.
T Consensus 249 s~N-~L~~lp~ 258 (622)
T 3g06_A 249 SGN-RLTSLPM 258 (622)
T ss_dssp CSS-CCSCCCC
T ss_pred CCC-CCCcCCc
Confidence 988 4556664
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.9e-22 Score=213.20 Aligned_cols=226 Identities=21% Similarity=0.222 Sum_probs=151.6
Q ss_pred chhHHHHhhcCeeecCCccc-ccccccccc-------CCCCCcEEEecCCcCCCcCchhh--hCCCcCcEEEeecCCCcc
Q 004707 221 PKEIRRVLKHNKLDLRDCRR-LKRISTRFC-------KLKSLVDLFLHGCLNLERFPEIL--EKMEHLKHIYLQRTAITE 290 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~-~~~~p~~~~-------~l~~L~~L~L~~~~~~~~~p~~~--~~l~~L~~L~L~~n~l~~ 290 (734)
|..+... ++.|++++|.. ...+|..+. ++++|++|+|++|.+.+.+|..+ ..+++|++|+|++|.++.
T Consensus 58 p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 135 (312)
T 1wwl_A 58 LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135 (312)
T ss_dssp CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS
T ss_pred HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc
Confidence 4444443 56677777665 234555443 57788888888877777777665 777788888888887777
Q ss_pred cCccccCC-----CCCcEeeecCCCCCCCCCcccCCCCccceeeccCccccc---CCccc--cCCCCCcEEEcCCCCCCC
Q 004707 291 LPSSFENL-----LGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQ---LPSSV--ADSNVLRYLWFPRCRNLV 360 (734)
Q Consensus 291 lp~~i~~l-----~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~---lp~~i--~~l~~L~~L~l~~~~~l~ 360 (734)
+|..++.+ ++|++|++++|.+.+..|..++++++|++|++++|.+.. +|..+ ..+++|++|++++|....
T Consensus 136 ~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence 77666655 778888888877766666777778888888888777552 34444 677777777777754221
Q ss_pred --ccCcccCCCCCCccEEEeecCCCCCCC--ccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCC-
Q 004707 361 --SLPPLLLSGLSSLECLHLRDCAVTDIP--QEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPE- 435 (734)
Q Consensus 361 --~l~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~- 435 (734)
.++...+..+++|++|+|++|.+++.+ ..+..+++|+.|+|++|.++.+|..+. ++|+.|+|++|++.+. |.
T Consensus 216 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~ 292 (312)
T 1wwl_A 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PSP 292 (312)
T ss_dssp HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CCT
T ss_pred hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hhH
Confidence 233333456677777888777777643 345566777777777777777777665 6777777777776553 43
Q ss_pred -CCCCCceEEecCCCCC
Q 004707 436 -LPSCLGFLNLSGCNML 451 (734)
Q Consensus 436 -~~~~L~~L~Ls~n~~l 451 (734)
.+++|+.|++++|++.
T Consensus 293 ~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 293 DELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTSCEEEEEECTTCTTT
T ss_pred hhCCCCCEEeccCCCCC
Confidence 2355666777776554
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=215.23 Aligned_cols=221 Identities=20% Similarity=0.211 Sum_probs=193.6
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCCCCCcEeee
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENLLGLESLSV 306 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L 306 (734)
..++.|+|++|......+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|.++.+|. .+..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 467889999998877777889999999999999998877777889999999999999999999987 4899999999999
Q ss_pred cCCCCCCCCCcccCCCCccceeeccC-cccccCCc-cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCC
Q 004707 307 RGCSKLDKLPDNIGNLESLAYILADG-SAISQLPS-SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVT 384 (734)
Q Consensus 307 s~~~~~~~lp~~l~~l~~L~~L~l~~-n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~ 384 (734)
++|.+....+..+.++++|++|++++ +.+..++. .+..+++|+.|++++| .+..+|. +..+++|++|+|++|.++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTCSSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCCcccCEEECCCCccC
Confidence 99987766667899999999999998 56667765 5889999999999996 5667775 789999999999999999
Q ss_pred CC-CccCCCCCCCcEEeeccCCCCccc-ccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCC
Q 004707 385 DI-PQEIGCLSSLEELDLSGNSFESLP-VSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNML 451 (734)
Q Consensus 385 ~l-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l 451 (734)
++ |..+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|++.+..+.. .++|+.|+|++|++.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 85 778999999999999999999764 46889999999999999887655543 478999999999754
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=9.9e-22 Score=211.47 Aligned_cols=241 Identities=17% Similarity=0.149 Sum_probs=185.1
Q ss_pred eeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC-ccccCCCCCcEeeecCCC
Q 004707 232 KLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP-SSFENLLGLESLSVRGCS 310 (734)
Q Consensus 232 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~Ls~~~ 310 (734)
..+.+++ .++.+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++.++ ..+.++++|++|++++|.
T Consensus 35 ~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3566654 4566777554 58999999998876655567889999999999999998775 458899999999999987
Q ss_pred CCCCCCcccCCCCccceeeccCcccccCCc--cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC-C
Q 004707 311 KLDKLPDNIGNLESLAYILADGSAISQLPS--SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI-P 387 (734)
Q Consensus 311 ~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p 387 (734)
+.+..+..++++++|++|++++|.++.+|. .+..+++|+.|++++|+.+..+++..+.++++|++|++++|.+.++ |
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 665444448899999999999999998887 6888999999999998778888776788999999999999999874 7
Q ss_pred ccCCCCCCCcEEeeccCCCCcccccc-cCCCCCcEEeeecCCCCCCCCC------CCCCCceEEecCCCCCC----CCCC
Q 004707 388 QEIGCLSSLEELDLSGNSFESLPVSI-KQLSQLSSLDLSDCNMLRSLPE------LPSCLGFLNLSGCNMLQ----SLPE 456 (734)
Q Consensus 388 ~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~~l~~lp~------~~~~L~~L~Ls~n~~l~----~lp~ 456 (734)
..++.+++|++|++++|.++.+|..+ ..+++|+.|++++|.+.+..+. ....++.++++++.+.+ .+|.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 78899999999999999998888754 4588999999999987764332 23456677777775543 2222
Q ss_pred ---CCcCCceEeccCCcCCCCCc
Q 004707 457 ---LPLRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 457 ---l~~~L~~L~l~~c~~L~~l~ 476 (734)
..++|+.|++++|. ++.+|
T Consensus 272 ~l~~l~~L~~L~Ls~N~-l~~i~ 293 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQ-LKSVP 293 (353)
T ss_dssp HHHTCTTCCEEECCSSC-CCCCC
T ss_pred HHhcccCCCEEECCCCC-CCccC
Confidence 23466777776663 33444
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=3.1e-21 Score=206.89 Aligned_cols=235 Identities=20% Similarity=0.255 Sum_probs=179.7
Q ss_pred HHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcE
Q 004707 224 IRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLES 303 (734)
Q Consensus 224 i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~ 303 (734)
+..+.++++|++++|.. ..+| .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.....+..+..+++|++
T Consensus 84 ~~~l~~L~~L~L~~n~i-~~~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKI-TDIS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcc-cCch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 67778888899988854 3455 48888999999998887554 444 77888899999988855544455888889999
Q ss_pred eeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCC
Q 004707 304 LSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAV 383 (734)
Q Consensus 304 L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l 383 (734)
|++++|...+. +. ++.+++|++|++++|.+..++. +..+++|+.|++++|. +..+++ +..+++|++|++++|.+
T Consensus 160 L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCc-hh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCch--hhcCCcCCEEEccCCcc
Confidence 99988765443 33 7788889999999888888776 7788888888888864 444444 66788888888888888
Q ss_pred CCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCC--CCCCCceEEecCCCCCCCCCC---CC
Q 004707 384 TDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPE--LPSCLGFLNLSGCNMLQSLPE---LP 458 (734)
Q Consensus 384 ~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~--~~~~L~~L~Ls~n~~l~~lp~---l~ 458 (734)
++++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+ ++. .+++|+.|++++|.+.+..|. ..
T Consensus 234 ~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 234 TDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 88766 788888888888888888875 67788888888888887654 342 347788888888887665543 24
Q ss_pred cCCceEeccCCcC
Q 004707 459 LRLRRLRAGNCKL 471 (734)
Q Consensus 459 ~~L~~L~l~~c~~ 471 (734)
++|+.|++++|+.
T Consensus 311 ~~L~~L~L~~n~l 323 (347)
T 4fmz_A 311 TNLTTLFLSQNHI 323 (347)
T ss_dssp TTCSEEECCSSSC
T ss_pred ccCCEEEccCCcc
Confidence 5788888888863
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=222.63 Aligned_cols=239 Identities=19% Similarity=0.165 Sum_probs=175.6
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC-ccccCCCCCcEeeec
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP-SSFENLLGLESLSVR 307 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~Ls 307 (734)
.++.|++++|...+..+..|.++++|++|+|++|.+.+..|..++++++|++|+|++|.++.+| ..|+++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 5889999999877777778999999999999999877777788999999999999999999886 569999999999999
Q ss_pred CCCCCCCCCcccCCCCccceeeccCccccc--CCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCc----cEEEeecC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQ--LPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSL----ECLHLRDC 381 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L----~~L~Ls~n 381 (734)
+|.+.+..+..++++++|++|++++|.+.. +|..++++++|+.|++++|. +..+++..++.+++| +.|++++|
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCC
Confidence 987665555579999999999999999985 79999999999999999865 333433333333343 44444444
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 004707 382 AVTDI--------------------------------------------------------------------------- 386 (734)
Q Consensus 382 ~l~~l--------------------------------------------------------------------------- 386 (734)
.+..+
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 43322
Q ss_pred -------CccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCC-CCCCCCceEEecCCCCCCCCCC-C
Q 004707 387 -------PQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLP-ELPSCLGFLNLSGCNMLQSLPE-L 457 (734)
Q Consensus 387 -------p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp-~~~~~L~~L~Ls~n~~l~~lp~-l 457 (734)
|..++.+++|+.|++++|.++.+|..+..+ +|+.|++++|.+. .+| ..+++|+.|++++|...+.++. .
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccccc
Confidence 233444566777777777766777666666 7777777776655 333 2345666666666665554442 3
Q ss_pred CcCCceEeccCCc
Q 004707 458 PLRLRRLRAGNCK 470 (734)
Q Consensus 458 ~~~L~~L~l~~c~ 470 (734)
.++|+.|++++|.
T Consensus 346 ~~~L~~L~l~~n~ 358 (570)
T 2z63_A 346 LPSLEFLDLSRNG 358 (570)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEeCcCCc
Confidence 4456666666553
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=4.7e-21 Score=214.24 Aligned_cols=214 Identities=21% Similarity=0.305 Sum_probs=97.0
Q ss_pred HHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcE
Q 004707 224 IRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLES 303 (734)
Q Consensus 224 i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~ 303 (734)
+..+.++++|++++|...+. +. +.++++|++|++++|.+.+. +. +.++++|++|++++|.++.+|. +..+++|++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSE
T ss_pred hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChh-hccCCcccE
Confidence 33444444455544433222 22 44555555555554433222 22 4445555555555554444332 333333333
Q ss_pred eeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCC
Q 004707 304 LSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAV 383 (734)
Q Consensus 304 L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l 383 (734)
|++++ .. ..++ .++++++|++|++++|.+..++. +..+++|+.|++++|.. ..+++ ++.+++|++|++++|.+
T Consensus 161 L~l~~-~~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 161 LSFGN-QV-TDLK-PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQI-SDITP--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp EEEEE-SC-CCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCC
T ss_pred eecCC-cc-cCch-hhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcc-ccccc--ccccCCCCEEECCCCCc
Confidence 33321 11 1111 15556666666666666665542 55566666666665432 22222 33455555555555555
Q ss_pred CCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCC-CCCCCCceEEecCCCCC
Q 004707 384 TDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLP-ELPSCLGFLNLSGCNML 451 (734)
Q Consensus 384 ~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp-~~~~~L~~L~Ls~n~~l 451 (734)
++++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+..+ ..+++|+.|++++|.+.
T Consensus 234 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 234 KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 300 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS
T ss_pred ccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCccc
Confidence 5442 34444555555555555544443 4444555555555544433221 12234444444444433
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=4.5e-21 Score=224.80 Aligned_cols=240 Identities=18% Similarity=0.171 Sum_probs=186.2
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCCCCCcEeee
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENLLGLESLSV 306 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L 306 (734)
.++++|++++|...+..+..|.++++|++|+|++|.+.+..|..++++++|++|+|++|.++.+|. .|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 578999999998777667789999999999999999888889999999999999999999999987 4999999999999
Q ss_pred cCCCCCCCCCcccCCCCccceeeccCcccccC-CccccCCCCCcEEEcCCCCCCCccCcccCC--CCCCccEEEeecCCC
Q 004707 307 RGCSKLDKLPDNIGNLESLAYILADGSAISQL-PSSVADSNVLRYLWFPRCRNLVSLPPLLLS--GLSSLECLHLRDCAV 383 (734)
Q Consensus 307 s~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l~~~~l~--~l~~L~~L~Ls~n~l 383 (734)
++|.+.+..|..++++++|++|++++|.+..+ |..++.+++|++|++++|. +..+++..+. .+++|+.|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcc
Confidence 99988776678899999999999999999855 5668899999999999965 4555543332 568999999999998
Q ss_pred CCCC-ccCCCC---------------------------CCCcEEeeccCCCCcc-cccccCCCC--CcEEeeecCCCCCC
Q 004707 384 TDIP-QEIGCL---------------------------SSLEELDLSGNSFESL-PVSIKQLSQ--LSSLDLSDCNMLRS 432 (734)
Q Consensus 384 ~~lp-~~l~~l---------------------------~~L~~L~Ls~n~l~~l-p~~l~~l~~--L~~L~L~~n~~l~~ 432 (734)
++++ ..++.+ ++|+.|++++|.++.+ |..+..++. |+.|+|++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 8743 333322 4566777777776643 445555543 77777777776655
Q ss_pred CCCC---CCCCceEEecCCCCCCCCCCC---CcCCceEeccC
Q 004707 433 LPEL---PSCLGFLNLSGCNMLQSLPEL---PLRLRRLRAGN 468 (734)
Q Consensus 433 lp~~---~~~L~~L~Ls~n~~l~~lp~l---~~~L~~L~l~~ 468 (734)
.|.. .++|++|++++|.+.+..|.. ..+|+.|++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 5443 356777777777766555432 34566666654
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=5.4e-21 Score=199.27 Aligned_cols=202 Identities=24% Similarity=0.349 Sum_probs=125.4
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCC-Cccc-CccccCCCCCcEeee
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTA-ITEL-PSSFENLLGLESLSV 306 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~-l~~l-p~~i~~l~~L~~L~L 306 (734)
.++.|++++|......+..|..+++|++|++++|.+.+..|..+.++++|++|++++|. ++.+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 56666666665554444556666666666666665555555666666666666666665 6555 444666666666666
Q ss_pred cCCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCC
Q 004707 307 RGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTD 385 (734)
Q Consensus 307 s~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~ 385 (734)
++|.+.+..|..+.++++|++|++++|.+..++.. +..+++|+.|++++| .+..+++..+..+++|+.|++++|.+++
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccc
Confidence 66665555556666666666666666666655543 556666666666664 3445555445666666666666666665
Q ss_pred C-CccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCC
Q 004707 386 I-PQEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 386 l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~ 431 (734)
+ |..++.+++|+.|++++|.++.+|. .+..+++|+.|+|++|++..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 3 5556666666666666666665554 35666666666666666543
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=4.8e-21 Score=222.16 Aligned_cols=85 Identities=33% Similarity=0.370 Sum_probs=65.7
Q ss_pred cCCCCCCCcEEeeccCCCC--cccccccCCCCCcEEeeecCCCCCCCCCCC---CCCceEEecCCCCCCCCCCC---CcC
Q 004707 389 EIGCLSSLEELDLSGNSFE--SLPVSIKQLSQLSSLDLSDCNMLRSLPELP---SCLGFLNLSGCNMLQSLPEL---PLR 460 (734)
Q Consensus 389 ~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~---~~L~~L~Ls~n~~l~~lp~l---~~~ 460 (734)
.+..+++|+.|++++|.+. ..|..+..+++|+.|+|++|++.+..|..+ ++|+.|+|++|.+.+..|.. .++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 3456788999999999754 367788999999999999999888777644 68999999999887655543 356
Q ss_pred CceEeccCCcCCC
Q 004707 461 LRRLRAGNCKLLQ 473 (734)
Q Consensus 461 L~~L~l~~c~~L~ 473 (734)
|+.|++++|....
T Consensus 544 L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 544 LQVLDYSLNHIMT 556 (635)
T ss_dssp CCEEECTTSCCCB
T ss_pred CCEEECCCCcCCC
Confidence 7777777775433
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=7.9e-22 Score=212.25 Aligned_cols=246 Identities=19% Similarity=0.167 Sum_probs=193.1
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeee
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSV 306 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L 306 (734)
..+++|++++|...+..+..|.++++|+.|++++|.+.+..|..+.++++|++|++++|.++.+|.. ++++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 3688999999976665555799999999999999987777778899999999999999999999877 889999999999
Q ss_pred cCCCCCCCCCc--ccCCCCccceeeccCc-ccccC-CccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCC
Q 004707 307 RGCSKLDKLPD--NIGNLESLAYILADGS-AISQL-PSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCA 382 (734)
Q Consensus 307 s~~~~~~~lp~--~l~~l~~L~~L~l~~n-~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~ 382 (734)
++|.+. .+|. .+.++++|++|++++| .+..+ +..+..+++|+.|++++|. +..+++..+..+++|++|++++|.
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc
Confidence 998665 4554 7889999999999998 47766 4578899999999999876 444444448899999999999999
Q ss_pred CCCCCcc-CCCCCCCcEEeeccCCCCccccc----ccCCCCCcEEeeecCCCCC----CCCC---CCCCCceEEecCCCC
Q 004707 383 VTDIPQE-IGCLSSLEELDLSGNSFESLPVS----IKQLSQLSSLDLSDCNMLR----SLPE---LPSCLGFLNLSGCNM 450 (734)
Q Consensus 383 l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~n~~l~----~lp~---~~~~L~~L~Ls~n~~ 450 (734)
+..+|.. +..+++|+.|++++|.++.++.. ....+.++.++++++.+.+ .+|. ..++|+.|++++|.+
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 9887765 34588999999999999865432 2346678888888887654 2332 346799999999987
Q ss_pred CCCCCCC----CcCCceEeccCCcCCCCCc
Q 004707 451 LQSLPEL----PLRLRRLRAGNCKLLQSLP 476 (734)
Q Consensus 451 l~~lp~l----~~~L~~L~l~~c~~L~~l~ 476 (734)
. .+|.. .++|+.|++++|+.....|
T Consensus 290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred C-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7 55542 3567777777776554443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.1e-21 Score=207.28 Aligned_cols=202 Identities=17% Similarity=0.163 Sum_probs=175.6
Q ss_pred HHhhcCeeecCCccccccccccc--cCCCCCcEEEecCCcCCCcCchhhhCC-----CcCcEEEeecCCCcccC-ccccC
Q 004707 226 RVLKHNKLDLRDCRRLKRISTRF--CKLKSLVDLFLHGCLNLERFPEILEKM-----EHLKHIYLQRTAITELP-SSFEN 297 (734)
Q Consensus 226 ~l~~l~~L~L~~~~~~~~~p~~~--~~l~~L~~L~L~~~~~~~~~p~~~~~l-----~~L~~L~L~~n~l~~lp-~~i~~ 297 (734)
.+.++++|++++|...+.+|..+ ..+++|++|+|++|.+.+. |..++.+ ++|++|+|++|.++.++ ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 57889999999999888889876 8999999999999987776 8878777 99999999999999887 67999
Q ss_pred CCCCcEeeecCCCCCCC--CCccc--CCCCccceeeccCcccccCC---cc-ccCCCCCcEEEcCCCCCCCccCcccCCC
Q 004707 298 LLGLESLSVRGCSKLDK--LPDNI--GNLESLAYILADGSAISQLP---SS-VADSNVLRYLWFPRCRNLVSLPPLLLSG 369 (734)
Q Consensus 298 l~~L~~L~Ls~~~~~~~--lp~~l--~~l~~L~~L~l~~n~l~~lp---~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~ 369 (734)
+++|++|++++|.+.+. +|..+ +++++|++|++++|.++.++ .. +..+++|+.|++++|......|...+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 99999999999987765 34445 89999999999999999544 33 3578999999999977555454444677
Q ss_pred CCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCC
Q 004707 370 LSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 370 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~ 431 (734)
+++|++|+|++|.++.+|..+. ++|++|+|++|+++.+|. +..+++|+.|+|++|++.+
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999999999876 899999999999999986 9999999999999998765
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.2e-20 Score=208.76 Aligned_cols=251 Identities=21% Similarity=0.328 Sum_probs=165.4
Q ss_pred HHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcE
Q 004707 224 IRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLES 303 (734)
Q Consensus 224 i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~ 303 (734)
+..+.++++|++++|... .+|. +.++++|++|++++|.+.+..+ ++++++|++|++++|.++.+|. +.++++|++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hhhhcCCCEEECCCCccC-Cchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 455666777777766543 3343 6677777777777765544333 6667777777777777766655 667777777
Q ss_pred eeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCC
Q 004707 304 LSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAV 383 (734)
Q Consensus 304 L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l 383 (734)
|++++|.+.+ ++. ++.+++|++|+++ +.+..++. +..+++|+.|++++|. +..++. +..+++|+.|++++|.+
T Consensus 139 L~l~~n~l~~-~~~-~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 139 LELSSNTISD-ISA-LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQI 211 (466)
T ss_dssp EEEEEEEECC-CGG-GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCC
T ss_pred EECCCCccCC-Chh-hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCcc
Confidence 7777765433 333 6667777777765 34444443 7777888888888765 444443 66788888888888888
Q ss_pred CCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCC-CCCCCCceEEecCCCCCCCCC-CCCcCC
Q 004707 384 TDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLP-ELPSCLGFLNLSGCNMLQSLP-ELPLRL 461 (734)
Q Consensus 384 ~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp-~~~~~L~~L~Ls~n~~l~~lp-~l~~~L 461 (734)
.+++. ++.+++|+.|++++|.++.++ .+..+++|+.|++++|.+.+..| ..+++|+.|++++|.+.+..+ ...++|
T Consensus 212 ~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 289 (466)
T 1o6v_A 212 SDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289 (466)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred ccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCcc
Confidence 77654 667888888888888888775 57788888888888887765443 234678888888887765332 124578
Q ss_pred ceEeccCCcCC--------CCCccccccccccCCC
Q 004707 462 RRLRAGNCKLL--------QSLPEIRSSVEELDAS 488 (734)
Q Consensus 462 ~~L~l~~c~~L--------~~l~~l~~s~n~L~~~ 488 (734)
+.|++++|..- ..+..++++.|.+++.
T Consensus 290 ~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp SEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred CeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCc
Confidence 88888877432 2222345555555543
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.8e-21 Score=193.60 Aligned_cols=205 Identities=18% Similarity=0.172 Sum_probs=160.9
Q ss_pred ccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCC-CcccCc-cccCCCCCcEeeecC-CCCCCCCC
Q 004707 240 RLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTA-ITELPS-SFENLLGLESLSVRG-CSKLDKLP 316 (734)
Q Consensus 240 ~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~-l~~lp~-~i~~l~~L~~L~Ls~-~~~~~~lp 316 (734)
.++.+|. +. ++|+.|++++|.+.+..+..+.++++|++|++++|. ++.+|. .|.++++|++|++++ |.+.+..+
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3667777 43 489999999988766666678889999999999996 888876 588899999999998 55554445
Q ss_pred cccCCCCccceeeccCcccccCCccccCCCCCc---EEEcCCCCCCCccCcccCCCCCCcc-EEEeecCCCCCCCccCCC
Q 004707 317 DNIGNLESLAYILADGSAISQLPSSVADSNVLR---YLWFPRCRNLVSLPPLLLSGLSSLE-CLHLRDCAVTDIPQEIGC 392 (734)
Q Consensus 317 ~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~---~L~l~~~~~l~~l~~~~l~~l~~L~-~L~Ls~n~l~~lp~~l~~ 392 (734)
..+.++++|++|++++|.++.+|. +..+++|+ .|++++|..+..+++..+.++++|+ .|++++|+++.+|.....
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 678889999999999999998887 77888887 8889887677888877788888898 999999888888776555
Q ss_pred CCCCcEEeeccCC-CCcccc-cccCC-CCCcEEeeecCCCCCCCCCCCCCCceEEecCC
Q 004707 393 LSSLEELDLSGNS-FESLPV-SIKQL-SQLSSLDLSDCNMLRSLPELPSCLGFLNLSGC 448 (734)
Q Consensus 393 l~~L~~L~Ls~n~-l~~lp~-~l~~l-~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n 448 (734)
.++|+.|++++|. ++.+|. .+..+ ++|+.|++++|++.+..+..+++|+.|+++++
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 5788899999884 888764 46777 88888888888776433344566666666655
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=4.5e-22 Score=210.83 Aligned_cols=235 Identities=17% Similarity=0.168 Sum_probs=184.1
Q ss_pred HhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeee
Q 004707 227 VLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSV 306 (734)
Q Consensus 227 l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L 306 (734)
..+++.|++++|...+..|..|.++++|++|+|++|.+.+..+ +..+++|++|++++|.++.+|. .++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 4578999999998877777889999999999999998766554 8889999999999999987764 389999999
Q ss_pred cCCCCCCCCCcccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCC
Q 004707 307 RGCSKLDKLPDNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTD 385 (734)
Q Consensus 307 s~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~ 385 (734)
++|.+.+..+. .+++|++|++++|.++.++. .++.+++|+.|++++|......+......+++|++|+|++|.+++
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99877655443 36789999999999997754 778899999999999654433333323478999999999999998
Q ss_pred CCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCC-CCCCCCC---
Q 004707 386 IPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNML-QSLPELP--- 458 (734)
Q Consensus 386 lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l-~~lp~l~--- 458 (734)
+|.. ..+++|++|++++|.++.+|..+..+++|+.|+|++|++. .+|.. .++|+.|++++|++. +.+|...
T Consensus 184 ~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 184 VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp EECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred cccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 7544 3589999999999999999888999999999999999876 45543 367899999999887 4444432
Q ss_pred cCCceEeccCCcCC
Q 004707 459 LRLRRLRAGNCKLL 472 (734)
Q Consensus 459 ~~L~~L~l~~c~~L 472 (734)
++|+.|++.++..+
T Consensus 262 ~~L~~l~l~~~~~l 275 (317)
T 3o53_A 262 QRVQTVAKQTVKKL 275 (317)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccceEEECCCchhc
Confidence 23455555444433
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=9.6e-22 Score=220.68 Aligned_cols=218 Identities=17% Similarity=0.170 Sum_probs=183.3
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeec
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVR 307 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls 307 (734)
.+++.|+|++|...+..|..|..+++|++|+|++|.+.+..| +..+++|++|+|++|.++.+|.. ++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 379999999998888778889999999999999998776655 88999999999999999988753 899999999
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccC-CccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQL-PSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI 386 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l 386 (734)
+|.+.+..+. .+++|+.|++++|.++.+ |..++.+++|+.|++++|...+..|......+++|+.|+|++|.++++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 9887765543 468899999999999976 567889999999999997655545554334789999999999999988
Q ss_pred CccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCC-CCCCC
Q 004707 387 PQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNML-QSLPE 456 (734)
Q Consensus 387 p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l-~~lp~ 456 (734)
|.. ..+++|+.|+|++|.++.+|+.+..+++|+.|+|++|.+.+ +|.. +++|+.|++++|++. +.+|.
T Consensus 185 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 185 KGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp ECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 543 46999999999999999999999999999999999998775 5543 367999999999887 44444
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1e-20 Score=196.09 Aligned_cols=210 Identities=19% Similarity=0.156 Sum_probs=121.3
Q ss_pred ccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCCCCCcEeeecCCCCCCCCCcccC
Q 004707 242 KRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENLLGLESLSVRGCSKLDKLPDNIG 320 (734)
Q Consensus 242 ~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~ 320 (734)
..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++.++. .+.++++|++|++++|.+.+..+..+.
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 34444332 356666666665544444456666666666666666665544 356666666666666655555555566
Q ss_pred CCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCCCCC-ccCcccCCCCCCccEEEeecCCCCCCC-ccCCCCCCCc
Q 004707 321 NLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCRNLV-SLPPLLLSGLSSLECLHLRDCAVTDIP-QEIGCLSSLE 397 (734)
Q Consensus 321 ~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~-~l~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~ 397 (734)
++++|++|++++|.+..++. .++.+++|++|++++|.... .+|.. +..+++|++|++++|++++++ ..+..+++|+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 66666666666666665544 45666666666666644322 13333 566666666666666666643 2344444444
Q ss_pred ----EEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCC
Q 004707 398 ----ELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSL 454 (734)
Q Consensus 398 ----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~l 454 (734)
.|++++|.++.+|.......+|+.|+|++|.+.+..+.. .++|+.|++++|++....
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 666666666666655555556666666666654433322 355666777776655433
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=5.5e-21 Score=197.81 Aligned_cols=205 Identities=18% Similarity=0.216 Sum_probs=154.0
Q ss_pred ccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccce
Q 004707 248 FCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAY 327 (734)
Q Consensus 248 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 327 (734)
+..+++|+.|++++|.+. .++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..++++++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 557788888888887543 333 4677888888888888888764 5778888888888888777666666788888888
Q ss_pred eeccCcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCC
Q 004707 328 ILADGSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNS 405 (734)
Q Consensus 328 L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~ 405 (734)
|++++|.+..+|.. +..+++|++|++++| .+..+++..+..+++|+.|++++|+++++|.. ++.+++|+.|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888888877654 577888888888876 45566666677888888888888888886554 5788888888888888
Q ss_pred CCccccc-ccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCCCcC
Q 004707 406 FESLPVS-IKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPELPLR 460 (734)
Q Consensus 406 l~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l~~~ 460 (734)
++.+|.. +..+++|+.|++++|++.+..| +|+.|+++.|.+.|.+|....+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHTGGGBBCTTSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhCCCcccCcccc
Confidence 8877654 5788888888888887765433 4666666666666666654433
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=2e-20 Score=195.44 Aligned_cols=198 Identities=23% Similarity=0.250 Sum_probs=118.5
Q ss_pred HHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEee
Q 004707 226 RVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLS 305 (734)
Q Consensus 226 ~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 305 (734)
.+.++++++++++. +..+|..+. ++|+.|+|++|.+.+..+..+..+++|++|+|++|.++.++.. +.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 34455666666543 344554442 5666666666665555556666666666666666666665543 5666666666
Q ss_pred ecCCCCCCCCCcccCCCCccceeeccCcccccCC-ccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCC
Q 004707 306 VRGCSKLDKLPDNIGNLESLAYILADGSAISQLP-SSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVT 384 (734)
Q Consensus 306 Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~ 384 (734)
+++|.+ ..+|..+..+++|++|++++|.++.+| ..+..+++|+.|++++| .+..+|+..+..+++|+.|+|++|+++
T Consensus 84 Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC
Confidence 666543 355666666666666666666666555 34556666666666664 344555554556666666666666666
Q ss_pred CCCcc-CCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCC
Q 004707 385 DIPQE-IGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 385 ~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~ 429 (734)
.+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 65543 3556666666666666666666665555666666665553
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=7.2e-20 Score=210.05 Aligned_cols=217 Identities=28% Similarity=0.292 Sum_probs=179.4
Q ss_pred hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeec
Q 004707 228 LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVR 307 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls 307 (734)
.+++.|++++|.. ..+|. .+++|++|+|++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 61 ~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 5789999999864 56776 6799999999998754 5666 77999999999999999987 67899999999
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIP 387 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp 387 (734)
+|.+ ..+|.. +++|++|++++|.++.+|.. +++|+.|++++| .+..+| ..+++|+.|++++|.++++|
T Consensus 130 ~N~l-~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 130 GNQL-TSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp SSCC-SCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCC
T ss_pred CCCC-CcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCCCC
Confidence 9865 457764 48999999999999998863 578999999885 455666 35789999999999999988
Q ss_pred ccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCCCcCCceEecc
Q 004707 388 QEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPELPLRLRRLRAG 467 (734)
Q Consensus 388 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~ 467 (734)
.. +++|+.|++++|.++.+|.. +++|+.|+|++|.+.+ +|..+++|+.|++++|.+. .+|..+++|+.|+++
T Consensus 198 ~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls 269 (622)
T 3g06_A 198 TL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPMLPSGLLSLSVY 269 (622)
T ss_dssp CC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECC
T ss_pred Cc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCcccccCcEEeCC
Confidence 64 57899999999999998854 4789999999997654 7788889999999999776 677788889999998
Q ss_pred CCcCCCCCc
Q 004707 468 NCKLLQSLP 476 (734)
Q Consensus 468 ~c~~L~~l~ 476 (734)
+|. ++.+|
T Consensus 270 ~N~-L~~lp 277 (622)
T 3g06_A 270 RNQ-LTRLP 277 (622)
T ss_dssp SSC-CCSCC
T ss_pred CCC-CCcCC
Confidence 884 44555
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=2.7e-20 Score=192.96 Aligned_cols=202 Identities=21% Similarity=0.163 Sum_probs=107.1
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC-ccccCCCCCcEeeec
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP-SSFENLLGLESLSVR 307 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~Ls 307 (734)
.+++|++++|...+..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.++.++ ..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 3555555555444433334555556666666555544444445555555666666655555444 335555556666665
Q ss_pred CCCCCCCCCcccCCCCccceeeccCccccc--CCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCcc----EEEeecC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQ--LPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLE----CLHLRDC 381 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~--lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~----~L~Ls~n 381 (734)
+|.+.+..+..++++++|++|++++|.+.. +|..+..+++|+.|++++|. +..+++..+..+.+|+ .|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCC
Confidence 555444444445555566666666555553 45555555566666665533 3333333333333333 5555555
Q ss_pred CCCCCCccCCCCCCCcEEeeccCCCCccccc-ccCCCCCcEEeeecCCCCC
Q 004707 382 AVTDIPQEIGCLSSLEELDLSGNSFESLPVS-IKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 382 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~l~ 431 (734)
.++.++.......+|+.|++++|.++.+|.. +..+++|+.|+|++|++..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 5555544444444555666666655555543 3555556666666555544
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.2e-19 Score=187.42 Aligned_cols=196 Identities=23% Similarity=0.326 Sum_probs=115.6
Q ss_pred cCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeeecC
Q 004707 230 HNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSVRG 308 (734)
Q Consensus 230 l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls~ 308 (734)
.++++++++. ++.+|..+. ++|+.|+|++|.+.+..+..+.++++|++|++++|.++.+|.. +.++++|++|++++
T Consensus 18 ~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4556666654 334555442 5677777777665554445666677777777777777666654 35667777777776
Q ss_pred CCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCC
Q 004707 309 CSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIP 387 (734)
Q Consensus 309 ~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp 387 (734)
|.+.+..+..+..+++|++|++++|.++.++.. +..+++|++|++++| .+..+++..+..+++|+.|+|++|.++.+|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 665544444556666666666666666655433 455666666666654 344455444555666666666666665544
Q ss_pred c-cCCCCCCCcEEeeccCCCCccccc-ccCCCCCcEEeeecCCC
Q 004707 388 Q-EIGCLSSLEELDLSGNSFESLPVS-IKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 388 ~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~ 429 (734)
. .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 3 255556666666666666555543 44555555555555554
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.6e-20 Score=198.95 Aligned_cols=230 Identities=17% Similarity=0.160 Sum_probs=182.4
Q ss_pred cCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCC
Q 004707 230 HNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGC 309 (734)
Q Consensus 230 l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~ 309 (734)
++..+++.+.....++..+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.++.+++ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 3445666665555555556778899999999998888778899999999999999999997776 899999999999998
Q ss_pred CCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC-Cc
Q 004707 310 SKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI-PQ 388 (734)
Q Consensus 310 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p~ 388 (734)
.+.+ +| ..++|++|++++|.+..++.. .+++|+.|++++|. +..+++..+..+++|++|+|++|.++++ +.
T Consensus 91 ~l~~-l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQE-LL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEE-EE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccc-cc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 7543 33 348999999999999987754 47899999999865 5556665588899999999999999985 44
Q ss_pred cC-CCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCC--CCCCCceEEecCCCCCCCCCCC---CcCCc
Q 004707 389 EI-GCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPE--LPSCLGFLNLSGCNMLQSLPEL---PLRLR 462 (734)
Q Consensus 389 ~l-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~--~~~~L~~L~Ls~n~~l~~lp~l---~~~L~ 462 (734)
.+ ..+++|++|++++|.++.+|.. ..+++|+.|+|++|++.+..+. .+++|+.|++++|.+. .+|.. .++|+
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred HHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 44 4789999999999999988744 4589999999999988764443 2478999999999876 45542 24566
Q ss_pred eEeccCCc
Q 004707 463 RLRAGNCK 470 (734)
Q Consensus 463 ~L~l~~c~ 470 (734)
.|++++|+
T Consensus 241 ~L~l~~N~ 248 (317)
T 3o53_A 241 HFDLRGNG 248 (317)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 66666554
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=193.40 Aligned_cols=199 Identities=17% Similarity=0.129 Sum_probs=118.5
Q ss_pred CCCCCcEEEecCCcCCCcCchhh--hCCCcCcEEEeecCCCccc-C----ccccCCCCCcEeeecCCCCCCCCCcccCCC
Q 004707 250 KLKSLVDLFLHGCLNLERFPEIL--EKMEHLKHIYLQRTAITEL-P----SSFENLLGLESLSVRGCSKLDKLPDNIGNL 322 (734)
Q Consensus 250 ~l~~L~~L~L~~~~~~~~~p~~~--~~l~~L~~L~L~~n~l~~l-p----~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l 322 (734)
.+++|++|++++|.+.+..|..+ ..+++|++|+|++|.++.. | ..+..+++|++|++++|.+.+..|..++++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34556666666666666666555 5666666666666666532 1 123456666666666666655555666666
Q ss_pred CccceeeccCccccc---CC--ccccCCCCCcEEEcCCCCCCCccCcc---cCCCCCCccEEEeecCCCCCC-CccCCCC
Q 004707 323 ESLAYILADGSAISQ---LP--SSVADSNVLRYLWFPRCRNLVSLPPL---LLSGLSSLECLHLRDCAVTDI-PQEIGCL 393 (734)
Q Consensus 323 ~~L~~L~l~~n~l~~---lp--~~i~~l~~L~~L~l~~~~~l~~l~~~---~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l 393 (734)
++|++|++++|.+.. ++ ..++.+++|++|++++|. +..++.. .+..+++|++|+|++|.++++ |..++.+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 666666666666542 22 223456666666666653 2332221 234556677777777776664 5555544
Q ss_pred ---CCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCC-CCCCCCCCCceEEecCCCCC
Q 004707 394 ---SSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLR-SLPELPSCLGFLNLSGCNML 451 (734)
Q Consensus 394 ---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~-~lp~~~~~L~~L~Ls~n~~l 451 (734)
++|++|+|++|+++.+|..+. ++|+.|+|++|++.+ ..+..+++|+.|++++|++.
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred cCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 567777777777776666553 567777777776655 33445566777777777654
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.8e-19 Score=189.91 Aligned_cols=194 Identities=19% Similarity=0.300 Sum_probs=125.7
Q ss_pred hHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCc
Q 004707 223 EIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLE 302 (734)
Q Consensus 223 ~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 302 (734)
....+.+++.|++++|.. ..+| .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.+| .+..+++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i-~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp CHHHHHTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred cHHHcCCcCEEEeeCCCc-cCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 345566777777777643 3344 36677777777777765443 333 667777777777777777665 466777777
Q ss_pred EeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCC
Q 004707 303 SLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCA 382 (734)
Q Consensus 303 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~ 382 (734)
+|++++|.+.+ +|. +..+++|++|++++|.++.++. +..+++|+.|++++| .+..+++ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCc
Confidence 77777765443 443 6677777777777777776655 666677777777665 3444444 5666677777777777
Q ss_pred CCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCC
Q 004707 383 VTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 383 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~ 429 (734)
+++++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus 185 l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 185 ISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred cCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 666554 566667777777777766666 366666666666666664
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=1.6e-19 Score=186.77 Aligned_cols=209 Identities=17% Similarity=0.199 Sum_probs=179.8
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLL 299 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~ 299 (734)
......+.+++.|++++|.. ..++. +..+++|++|++++|.+.+ + ..+..+++|++|++++|.++.+|.. +.+++
T Consensus 34 ~~~~~~l~~L~~L~l~~~~i-~~~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 34 AVTQNELNSIDQIIANNSDI-KSVQG-IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp EECHHHHTTCCEEECTTSCC-CCCTT-GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccccccccceeeeeeCCCCc-ccccc-cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 45567888999999999864 44554 8899999999999998665 3 4788999999999999999988765 78999
Q ss_pred CCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEe
Q 004707 300 GLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHL 378 (734)
Q Consensus 300 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~L 378 (734)
+|++|++++|.+.+..+..++++++|++|++++|.++.+|.. +..+++|+.|++++|. +..+++..+..+++|+.|++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence 999999999988877777789999999999999999988765 5889999999999974 66777776889999999999
Q ss_pred ecCCCCCCCcc-CCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCCCCCCC
Q 004707 379 RDCAVTDIPQE-IGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPELPSCL 440 (734)
Q Consensus 379 s~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L 440 (734)
++|+++++|.. ++.+++|+.|++++|.+. +.+++|+.|++..|.+.|.+|....++
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 99999997654 789999999999999765 346789999999999999999765533
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=9.1e-19 Score=180.87 Aligned_cols=195 Identities=23% Similarity=0.281 Sum_probs=151.2
Q ss_pred CCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCCCCCcEeeecCCCCCCCCCcccCCCCccceeecc
Q 004707 253 SLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILAD 331 (734)
Q Consensus 253 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~ 331 (734)
+++.++++++.+. .+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5778999887544 5666443 578999999999998876 58889999999999987665444556889999999999
Q ss_pred CcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCCCCcc
Q 004707 332 GSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNSFESL 409 (734)
Q Consensus 332 ~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l 409 (734)
+|.+..+|.. +..+++|++|++++| .+..+++..+..+++|++|+|++|.++++|.. ++.+++|+.|++++|.++.+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 9999887754 577889999999885 45666666678889999999999998887665 78888999999999988887
Q ss_pred ccc-ccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCC
Q 004707 410 PVS-IKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNML 451 (734)
Q Consensus 410 p~~-l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l 451 (734)
|.. +..+++|+.|+|++|++.+..+.. .++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 764 678889999999988766543332 356677777777544
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=4.8e-20 Score=194.55 Aligned_cols=198 Identities=16% Similarity=0.152 Sum_probs=99.9
Q ss_pred hcCeeecCCccccccccccc--cCCCCCcEEEecCCcCCCcCc----hhhhCCCcCcEEEeecCCCcccC-ccccCCCCC
Q 004707 229 KHNKLDLRDCRRLKRISTRF--CKLKSLVDLFLHGCLNLERFP----EILEKMEHLKHIYLQRTAITELP-SSFENLLGL 301 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~--~~l~~L~~L~L~~~~~~~~~p----~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L 301 (734)
++++|++++|...+..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.++.++ ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35555555555555555544 555555555555555444333 22234555555555555555443 335555555
Q ss_pred cEeeecCCCCCCC--C--CcccCCCCccceeeccCcccccCCcc----ccCCCCCcEEEcCCCCCCCccCcccCCCC---
Q 004707 302 ESLSVRGCSKLDK--L--PDNIGNLESLAYILADGSAISQLPSS----VADSNVLRYLWFPRCRNLVSLPPLLLSGL--- 370 (734)
Q Consensus 302 ~~L~Ls~~~~~~~--l--p~~l~~l~~L~~L~l~~n~l~~lp~~----i~~l~~L~~L~l~~~~~l~~l~~~~l~~l--- 370 (734)
++|+|++|.+.+. + +..++.+++|++|++++|.++.++.. +..+++|++|++++|......|+. +..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCc
Confidence 5555555544331 1 11224555555555555555544332 344555555555554433322332 2332
Q ss_pred CCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCC
Q 004707 371 SSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 371 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l 430 (734)
++|++|+|++|+++.+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 455555555555555555442 455555555555555543 445555555555555543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.5e-19 Score=188.88 Aligned_cols=193 Identities=20% Similarity=0.327 Sum_probs=162.9
Q ss_pred ccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccce
Q 004707 248 FCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAY 327 (734)
Q Consensus 248 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 327 (734)
+..+++|+.|++++|.+. .+| .+..+++|++|++++|.++.++. +..+++|++|++++|.+. .++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCE
Confidence 557899999999998654 455 58889999999999999999988 999999999999998754 455 5999999999
Q ss_pred eeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCC
Q 004707 328 ILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 328 L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 407 (734)
|++++|.+..++. +..+++|+.|++++|. +..+++ +..+++|+.|++++|.+++++. +..+++|+.|++++|.++
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC
Confidence 9999999999876 8999999999999964 555655 7789999999999999999876 889999999999999999
Q ss_pred cccccccCCCCCcEEeeecCCCCCCCC-CCCCCCceEEecCCCCC
Q 004707 408 SLPVSIKQLSQLSSLDLSDCNMLRSLP-ELPSCLGFLNLSGCNML 451 (734)
Q Consensus 408 ~lp~~l~~l~~L~~L~L~~n~~l~~lp-~~~~~L~~L~Ls~n~~l 451 (734)
.++. +..+++|+.|+|++|++.+..| ..+++|+.|++++|++.
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred cChh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 8885 8889999999999998765433 22356677777776543
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=5.7e-19 Score=204.65 Aligned_cols=104 Identities=29% Similarity=0.349 Sum_probs=86.5
Q ss_pred CCCCCCccEEEeecCCCCC--CCccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCCCCCC---CCCCC
Q 004707 367 LSGLSSLECLHLRDCAVTD--IPQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLRSLPE---LPSCL 440 (734)
Q Consensus 367 l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~---~~~~L 440 (734)
+..+++|+.|+|++|++.+ .|..+..+++|+.|+|++|+++.+ |..+.++++|+.|+|++|++.+..|. .+++|
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 4556789999999998654 688899999999999999999977 55789999999999999998776554 34789
Q ss_pred ceEEecCCCCCCCCCCC----CcCCceEeccCCc
Q 004707 441 GFLNLSGCNMLQSLPEL----PLRLRRLRAGNCK 470 (734)
Q Consensus 441 ~~L~Ls~n~~l~~lp~l----~~~L~~L~l~~c~ 470 (734)
+.|+|++|++.+..|.. +.+|+.|++++|+
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999999998877753 4577888887765
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=1e-18 Score=182.41 Aligned_cols=195 Identities=22% Similarity=0.252 Sum_probs=150.7
Q ss_pred ccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccC-ccccCCCCCcEeeecCCCCCCCCCcccCCCCccc
Q 004707 248 FCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELP-SSFENLLGLESLSVRGCSKLDKLPDNIGNLESLA 326 (734)
Q Consensus 248 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~ 326 (734)
+.++++|+.++++++.+ ..+|..+. ++++.|+|++|.++.++ ..+.++++|++|++++|.+.+ ++. .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCC
Confidence 66788899999988754 45665543 68899999999998764 558889999999999876544 444 37888999
Q ss_pred eeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCC
Q 004707 327 YILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNS 405 (734)
Q Consensus 327 ~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~ 405 (734)
+|++++|.+..+|..+..+++|+.|++++| .+..+++..+.++++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999999999888888899999999885 56677766688888999999999988887654 6778889999999999
Q ss_pred CCcccccc-cCCCCCcEEeeecCCCCCCCCCCC---CCCceEEecCCC
Q 004707 406 FESLPVSI-KQLSQLSSLDLSDCNMLRSLPELP---SCLGFLNLSGCN 449 (734)
Q Consensus 406 l~~lp~~l-~~l~~L~~L~L~~n~~l~~lp~~~---~~L~~L~Ls~n~ 449 (734)
++.+|..+ ..+++|+.|+|++|++. .+|... .+|+.|+|++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 88888754 67888899999888765 444322 235555555553
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=4e-19 Score=180.03 Aligned_cols=194 Identities=18% Similarity=0.229 Sum_probs=167.1
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcC-chhhhCCCcCcEEEeec-CCCcccCc-cccCCCCCcEee
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERF-PEILEKMEHLKHIYLQR-TAITELPS-SFENLLGLESLS 305 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~-n~l~~lp~-~i~~l~~L~~L~ 305 (734)
.++.|++++|...+..+..|.++++|++|++++|...+.+ +..+.++++|++|++++ |.++.+|. .|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 6889999999876666668999999999999999744444 45789999999999999 99999875 588999999999
Q ss_pred ecCCCCCCCCCcccCCCCccc---eeeccCc-ccccCCcc-ccCCCCCc-EEEcCCCCCCCccCcccCCCCCCccEEEee
Q 004707 306 VRGCSKLDKLPDNIGNLESLA---YILADGS-AISQLPSS-VADSNVLR-YLWFPRCRNLVSLPPLLLSGLSSLECLHLR 379 (734)
Q Consensus 306 Ls~~~~~~~lp~~l~~l~~L~---~L~l~~n-~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls 379 (734)
+++|.+.+ +|. ++.+++|+ +|++++| .++.+|.. +..+++|+ .|++++|. +..+|+..+.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEEcC
Confidence 99987655 787 88899988 9999999 99988764 88899999 99999865 55888875665 899999999
Q ss_pred cCC-CCCCC-ccCCCC-CCCcEEeeccCCCCcccccccCCCCCcEEeeecCC
Q 004707 380 DCA-VTDIP-QEIGCL-SSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCN 428 (734)
Q Consensus 380 ~n~-l~~lp-~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 428 (734)
+|. ++.+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 995 99875 458888 9999999999999999876 78899999999875
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=2e-19 Score=201.79 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=182.4
Q ss_pred cCchhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCC
Q 004707 219 WDPKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENL 298 (734)
Q Consensus 219 ~~~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l 298 (734)
..+..+..+.++++|+|++|...+..| +..+++|++|+|++|.+.+ +| ..++|++|++++|.++.++.. .+
T Consensus 49 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~~N~l~~~~~~--~l 119 (487)
T 3oja_A 49 ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCS--RG 119 (487)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCCCEEEC--CC
T ss_pred CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECcCCcCCCCCcc--cc
Confidence 346678889999999999998766555 8999999999999997543 33 238999999999999988764 57
Q ss_pred CCCcEeeecCCCCCCCCCcccCCCCccceeeccCccccc-CCcccc-CCCCCcEEEcCCCCCCCccCcccCCCCCCccEE
Q 004707 299 LGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQ-LPSSVA-DSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECL 376 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-lp~~i~-~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L 376 (734)
++|++|++++|.+.+..|..++++++|++|++++|.++. .|..+. .+++|+.|++++|. +..+++ ...+++|+.|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~--~~~l~~L~~L 196 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--QVVFAKLKTL 196 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--CCCCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc--cccCCCCCEE
Confidence 899999999999988888899999999999999999996 566665 79999999999976 555554 4579999999
Q ss_pred EeecCCCCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCC-CCCCCC---CCCCceEEec
Q 004707 377 HLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNML-RSLPEL---PSCLGFLNLS 446 (734)
Q Consensus 377 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l-~~lp~~---~~~L~~L~Ls 446 (734)
+|++|.++++|..++.+++|+.|+|++|.++.+|..+..+++|+.|++++|++. +.+|.. .+.|+.|+++
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999999998899999999999999999999999999999999999999987 444432 2334445554
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=3.6e-18 Score=183.37 Aligned_cols=234 Identities=20% Similarity=0.200 Sum_probs=174.7
Q ss_pred CeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCc-ccCc-cccCCCCCcEe-eec
Q 004707 231 NKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAIT-ELPS-SFENLLGLESL-SVR 307 (734)
Q Consensus 231 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~-~i~~l~~L~~L-~Ls 307 (734)
++++.+++ .++.+|..+ .+++++|+|++|.+....+..|.++++|++|+|++|.+. .+|. .|.++++|+.+ .++
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555543 456778765 368999999998765444456888999999999999875 4665 47888887764 445
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCC-CccEEEeecCCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLS-SLECLHLRDCAVTD 385 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~-~L~~L~Ls~n~l~~ 385 (734)
+|++....|..+..+++|++|++++|.+..+|.. +....++..|++.+++.+..++...+..+. .++.|+|++|++++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5555555567788999999999999999877653 446677888888888888888877666664 58889999999998
Q ss_pred CCccCCCCCCCcEEeecc-CCCCccccc-ccCCCCCcEEeeecCCCCCCCCCCCCCCceEEecCCCCCCCCCCC--CcCC
Q 004707 386 IPQEIGCLSSLEELDLSG-NSFESLPVS-IKQLSQLSSLDLSDCNMLRSLPELPSCLGFLNLSGCNMLQSLPEL--PLRL 461 (734)
Q Consensus 386 lp~~l~~l~~L~~L~Ls~-n~l~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n~~l~~lp~l--~~~L 461 (734)
+|.......+|+.|++++ |.++.+|.. +..+++|+.|+|++|++....+..+.+|+.|.+.+|..++.+|.+ ..+|
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L 248 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVAL 248 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSC
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcCh
Confidence 888777778899999874 678888864 588899999999998765444456778888888888777777753 3455
Q ss_pred ceEecc
Q 004707 462 RRLRAG 467 (734)
Q Consensus 462 ~~L~l~ 467 (734)
+.+++.
T Consensus 249 ~~l~l~ 254 (350)
T 4ay9_X 249 MEASLT 254 (350)
T ss_dssp CEEECS
T ss_pred hhCcCC
Confidence 555554
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.6e-17 Score=169.60 Aligned_cols=174 Identities=22% Similarity=0.297 Sum_probs=88.1
Q ss_pred CCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCCCCCcEeeecCCCCCCCCCcccCCCCccceeecc
Q 004707 253 SLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILAD 331 (734)
Q Consensus 253 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~ 331 (734)
..+.++++++. +..+|..+. ++|+.|+|++|.++.++. .+.++++|++|+|++|.+.+..|..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34555555543 334444332 355666666666555433 35555666666666655555445555555566666665
Q ss_pred CcccccCCc-cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc-cCCCCCCCcEEeeccCCCCcc
Q 004707 332 GSAISQLPS-SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ-EIGCLSSLEELDLSGNSFESL 409 (734)
Q Consensus 332 ~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l 409 (734)
+|.++.+|. .+..+++|++|++++| .+..+++..+..+++|++|+|++|+++++|. .++.+++|+.|+|++|.++.+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 555555443 2344555555555543 3334444434455555555555555555443 344555555555555555544
Q ss_pred cc-cccCCCCCcEEeeecCCCC
Q 004707 410 PV-SIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 410 p~-~l~~l~~L~~L~L~~n~~l 430 (734)
|. .+..+++|+.|+|++|++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 43 3444455555555554443
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=4.1e-20 Score=201.36 Aligned_cols=233 Identities=17% Similarity=0.134 Sum_probs=145.8
Q ss_pred hhHHHHhhcCeeecCCcccccc----ccccccCCCCCcEEEecCCcC---CCcCchhh-------hCCCcCcEEEeecCC
Q 004707 222 KEIRRVLKHNKLDLRDCRRLKR----ISTRFCKLKSLVDLFLHGCLN---LERFPEIL-------EKMEHLKHIYLQRTA 287 (734)
Q Consensus 222 ~~i~~l~~l~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~---~~~~p~~~-------~~l~~L~~L~L~~n~ 287 (734)
..+.....++.|+|++|..... ++..+..+++|++|+|++|.. .+.+|..+ ..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3455566677788887765544 333466777888888877532 23444443 567777888887777
Q ss_pred Ccc-----cCccccCCCCCcEeeecCCCCCCCCC----cccCCC---------CccceeeccCcccc--cCC---ccccC
Q 004707 288 ITE-----LPSSFENLLGLESLSVRGCSKLDKLP----DNIGNL---------ESLAYILADGSAIS--QLP---SSVAD 344 (734)
Q Consensus 288 l~~-----lp~~i~~l~~L~~L~Ls~~~~~~~lp----~~l~~l---------~~L~~L~l~~n~l~--~lp---~~i~~ 344 (734)
++. +|..+.++++|++|+|++|.+....+ ..+..+ ++|++|++++|.++ .+| ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 764 56667777777888887776543222 223333 67777777777775 334 45566
Q ss_pred CCCCcEEEcCCCCCCCc----cCcccCCCCCCccEEEeecCCCC-----CCCccCCCCCCCcEEeeccCCCCc-----cc
Q 004707 345 SNVLRYLWFPRCRNLVS----LPPLLLSGLSSLECLHLRDCAVT-----DIPQEIGCLSSLEELDLSGNSFES-----LP 410 (734)
Q Consensus 345 l~~L~~L~l~~~~~l~~----l~~~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~-----lp 410 (734)
+++|+.|++++|..... +.+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++. +|
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 77777777777643210 22212566777777777777773 356666777777777777777763 35
Q ss_pred cccc--CCCCCcEEeeecCCCCC----CCCCC----CCCCceEEecCCCCCCCC
Q 004707 411 VSIK--QLSQLSSLDLSDCNMLR----SLPEL----PSCLGFLNLSGCNMLQSL 454 (734)
Q Consensus 411 ~~l~--~l~~L~~L~L~~n~~l~----~lp~~----~~~L~~L~Ls~n~~l~~l 454 (734)
..+. .+++|+.|+|++|.+.+ .+|.. +++|+.|++++|++.+..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5553 37777777777777655 34432 356667777766655443
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=7.3e-18 Score=191.09 Aligned_cols=182 Identities=21% Similarity=0.267 Sum_probs=153.5
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecC
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRG 308 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~ 308 (734)
+++.|++++|... .+|..+ +++|+.|+|++|.+. .+| ..+++|++|+|++|.|+.+|. +.+ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCC-ccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 7899999998754 488766 388999999998765 677 567899999999999999998 665 999999999
Q ss_pred CCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc
Q 004707 309 CSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ 388 (734)
Q Consensus 309 ~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~ 388 (734)
|.+.+ +|. .+++|+.|++++|.++.+|. .+++|+.|++++|. +..+|. +. ++|+.|+|++|+++.+|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 87665 777 68999999999999999887 67899999999965 555777 44 899999999999999988
Q ss_pred cCCCCCCC-------cEEeeccCCCCcccccccCCCCCcEEeeecCCCCCCCCC
Q 004707 389 EIGCLSSL-------EELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLRSLPE 435 (734)
Q Consensus 389 ~l~~l~~L-------~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~~lp~ 435 (734)
+.. +| +.|+|++|.|+.+|..+..+++|+.|+|++|++.+.+|.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 654 77 999999999999999998899999999999998876654
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.5e-19 Score=192.68 Aligned_cols=232 Identities=16% Similarity=0.174 Sum_probs=133.9
Q ss_pred hHHHH--hhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCc-CchhhhCCCcCcEEEeecCCCc-ccCccccCC
Q 004707 223 EIRRV--LKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLER-FPEILEKMEHLKHIYLQRTAIT-ELPSSFENL 298 (734)
Q Consensus 223 ~i~~l--~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~-~p~~~~~l~~L~~L~L~~n~l~-~lp~~i~~l 298 (734)
.+..+ ..++.|++++|...+..+. +..+++|++|++++|.+.+. +|..+..+++|++|++++|.++ ..|..++.+
T Consensus 63 ~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 34444 5566677777655554444 44677777777777665444 6666667777777777777666 445556667
Q ss_pred CCCcEeeecCCCCCC--CCCcccCCCCccceeeccCc-cccc--CCccccCCC-CCcEEEcCCCC-CCC--ccCcccCCC
Q 004707 299 LGLESLSVRGCSKLD--KLPDNIGNLESLAYILADGS-AISQ--LPSSVADSN-VLRYLWFPRCR-NLV--SLPPLLLSG 369 (734)
Q Consensus 299 ~~L~~L~Ls~~~~~~--~lp~~l~~l~~L~~L~l~~n-~l~~--lp~~i~~l~-~L~~L~l~~~~-~l~--~l~~~~l~~ 369 (734)
++|++|++++|..+. .++..+.++++|++|++++| .++. ++..+..++ +|++|++++|. .+. .++. .+..
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~ 220 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRR 220 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhh
Confidence 777777777763333 25555666677777777776 6653 555666666 77777776663 222 2222 2445
Q ss_pred CCCccEEEeecCC-CCC-CCccCCCCCCCcEEeeccCC-CC-cccccccCCCCCcEEeeecCCCCC-CCCCCCCCCceEE
Q 004707 370 LSSLECLHLRDCA-VTD-IPQEIGCLSSLEELDLSGNS-FE-SLPVSIKQLSQLSSLDLSDCNMLR-SLPELPSCLGFLN 444 (734)
Q Consensus 370 l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~n~~l~-~lp~~~~~L~~L~ 444 (734)
+++|+.|++++|. +++ .+..++.+++|+.|++++|. ++ .....+.++++|+.|++++| +.. .+......|..|+
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceE
Confidence 6667777777766 443 45556666677777776663 22 11124556666667766666 111 0111112355555
Q ss_pred ecCCCCCCCCCCC
Q 004707 445 LSGCNMLQSLPEL 457 (734)
Q Consensus 445 Ls~n~~l~~lp~l 457 (734)
+++|.+.+..|..
T Consensus 300 l~~n~l~~~~~~~ 312 (336)
T 2ast_B 300 INCSHFTTIARPT 312 (336)
T ss_dssp ESCCCSCCTTCSS
T ss_pred EecccCccccCCc
Confidence 5555555555543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=2.9e-17 Score=167.68 Aligned_cols=176 Identities=19% Similarity=0.274 Sum_probs=154.8
Q ss_pred hcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeeec
Q 004707 229 KHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSVR 307 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls 307 (734)
..+.++++++. +..+|..+. ++|+.|+|++|.+.+..+..+.++++|++|+|++|.++.++.. +.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45678888764 567787664 6999999999998888888899999999999999999987654 8999999999999
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI 386 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l 386 (734)
+|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++| .+..+++..+..+++|+.|+|++|+++.+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9988877777889999999999999999998876 578999999999996 56778876689999999999999999997
Q ss_pred Cc-cCCCCCCCcEEeeccCCCCc
Q 004707 387 PQ-EIGCLSSLEELDLSGNSFES 408 (734)
Q Consensus 387 p~-~l~~l~~L~~L~Ls~n~l~~ 408 (734)
|. .+..+++|+.|+|++|.++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 65 68899999999999999874
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=8.1e-18 Score=175.70 Aligned_cols=173 Identities=21% Similarity=0.327 Sum_probs=140.6
Q ss_pred ccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccce
Q 004707 248 FCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAY 327 (734)
Q Consensus 248 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 327 (734)
+..+++|+.|++++|.+. .++ .+..+++|++|++++|.++.++. +.++++|++|++++|.+.+ +|. ++.+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Chh-hccCCCCCE
Confidence 457888889999887654 344 37788889999999998888877 8888999999999876544 444 888889999
Q ss_pred eeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCC
Q 004707 328 ILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 328 L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 407 (734)
|++++|.+..++ .+..+++|+.|++++|. +..++ .+..+++|+.|++++|.+++++. +..+++|+.|++++|.++
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch--hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 999999888874 57888889999998864 44453 27788999999999999998766 888999999999999999
Q ss_pred cccccccCCCCCcEEeeecCCCCC
Q 004707 408 SLPVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 408 ~lp~~l~~l~~L~~L~L~~n~~l~ 431 (734)
.+| .+..+++|+.|++++|++..
T Consensus 192 ~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCh-hhccCCCCCEEECcCCcccC
Confidence 887 48889999999999987654
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.7e-19 Score=192.45 Aligned_cols=214 Identities=19% Similarity=0.221 Sum_probs=173.7
Q ss_pred cCeeecCCccccccccccccCC--CCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcc--cCccccCCCCCcEee
Q 004707 230 HNKLDLRDCRRLKRISTRFCKL--KSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITE--LPSSFENLLGLESLS 305 (734)
Q Consensus 230 l~~L~L~~~~~~~~~p~~~~~l--~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~~L~ 305 (734)
.+.++++++... |..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 467888887544 5556677 8999999999987776665 5679999999999999873 788889999999999
Q ss_pred ecCCCCCCCCCcccCCCCccceeeccCc-ccc--cCCccccCCCCCcEEEcCCCCCCCc--cCcccCCCCC-CccEEEee
Q 004707 306 VRGCSKLDKLPDNIGNLESLAYILADGS-AIS--QLPSSVADSNVLRYLWFPRCRNLVS--LPPLLLSGLS-SLECLHLR 379 (734)
Q Consensus 306 Ls~~~~~~~lp~~l~~l~~L~~L~l~~n-~l~--~lp~~i~~l~~L~~L~l~~~~~l~~--l~~~~l~~l~-~L~~L~Ls 379 (734)
+++|.+.+..|..++.+++|++|++++| .++ .++..+..+++|++|++++|..+.. ++. .+..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeC
Confidence 9999887788888999999999999999 677 4777888999999999999855554 333 367788 99999999
Q ss_pred cC--CCC--CCCccCCCCCCCcEEeeccCC-CC-cccccccCCCCCcEEeeecCCCCC-C-C--CCCCCCCceEEecCC
Q 004707 380 DC--AVT--DIPQEIGCLSSLEELDLSGNS-FE-SLPVSIKQLSQLSSLDLSDCNMLR-S-L--PELPSCLGFLNLSGC 448 (734)
Q Consensus 380 ~n--~l~--~lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~n~~l~-~-l--p~~~~~L~~L~Ls~n 448 (734)
+| .++ .+|..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|.... . + -...++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99 555 377777889999999999998 65 667788999999999999996221 1 0 012577888999888
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=6.7e-20 Score=199.67 Aligned_cols=230 Identities=16% Similarity=0.177 Sum_probs=181.6
Q ss_pred cccccccccCCCCCcEEEecCCcCCCcC----chhhhCCCcCcEEEeecCCCc----ccCccc-------cCCCCCcEee
Q 004707 241 LKRISTRFCKLKSLVDLFLHGCLNLERF----PEILEKMEHLKHIYLQRTAIT----ELPSSF-------ENLLGLESLS 305 (734)
Q Consensus 241 ~~~~p~~~~~l~~L~~L~L~~~~~~~~~----p~~~~~l~~L~~L~L~~n~l~----~lp~~i-------~~l~~L~~L~ 305 (734)
...++..+..+++|+.|+|++|.+.... +..+..+++|++|+|++|.+. .+|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3456677889999999999999876653 344678999999999997655 344444 7899999999
Q ss_pred ecCCCCCC----CCCcccCCCCccceeeccCccccc-----CCccccCC---------CCCcEEEcCCCCCC-CccCc--
Q 004707 306 VRGCSKLD----KLPDNIGNLESLAYILADGSAISQ-----LPSSVADS---------NVLRYLWFPRCRNL-VSLPP-- 364 (734)
Q Consensus 306 Ls~~~~~~----~lp~~l~~l~~L~~L~l~~n~l~~-----lp~~i~~l---------~~L~~L~l~~~~~l-~~l~~-- 364 (734)
|++|.+.. .+|..+.++++|++|++++|.++. ++..+..+ ++|++|++++|... ..++.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99998777 477788999999999999999872 34444445 89999999997644 23332
Q ss_pred ccCCCCCCccEEEeecCCCCC------CCccCCCCCCCcEEeeccCCC-----CcccccccCCCCCcEEeeecCCCCCC-
Q 004707 365 LLLSGLSSLECLHLRDCAVTD------IPQEIGCLSSLEELDLSGNSF-----ESLPVSIKQLSQLSSLDLSDCNMLRS- 432 (734)
Q Consensus 365 ~~l~~l~~L~~L~Ls~n~l~~------lp~~l~~l~~L~~L~Ls~n~l-----~~lp~~l~~l~~L~~L~L~~n~~l~~- 432 (734)
..+..+++|++|+|++|.++. +|..+..+++|+.|+|++|.+ ..+|..+..+++|+.|+|++|.+.+.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 225678899999999999983 344788899999999999999 56888899999999999999997653
Q ss_pred ---CCC-----CCCCCceEEecCCCCCC----CCCCC----CcCCceEeccCCc
Q 004707 433 ---LPE-----LPSCLGFLNLSGCNMLQ----SLPEL----PLRLRRLRAGNCK 470 (734)
Q Consensus 433 ---lp~-----~~~~L~~L~Ls~n~~l~----~lp~l----~~~L~~L~l~~c~ 470 (734)
+|. ..++|+.|+|++|.+.+ .+|.. .++|+.|++++|+
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 333 26789999999998876 46642 3677777777765
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=4.5e-17 Score=174.83 Aligned_cols=219 Identities=20% Similarity=0.198 Sum_probs=177.9
Q ss_pred cEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeeecCCCCCCCCCc-ccCCCCccce-eecc
Q 004707 255 VDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSVRGCSKLDKLPD-NIGNLESLAY-ILAD 331 (734)
Q Consensus 255 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls~~~~~~~lp~-~l~~l~~L~~-L~l~ 331 (734)
++++.+++. +..+|..+ .+++++|+|++|+|+.+|.. |.++++|++|+|++|.+.+.+|. .|.++++|++ +.+.
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567777654 55778755 36899999999999999875 89999999999999998887775 5788988876 5667
Q ss_pred CcccccCC-ccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecC-CCCCCCc-cCCCC-CCCcEEeeccCCCC
Q 004707 332 GSAISQLP-SSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDC-AVTDIPQ-EIGCL-SSLEELDLSGNSFE 407 (734)
Q Consensus 332 ~n~l~~lp-~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n-~l~~lp~-~l~~l-~~L~~L~Ls~n~l~ 407 (734)
+|.+..++ ..+..+++|++|++++| .+..+++..+....++..|++.++ .+..+|. .+..+ ..++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 79999885 56789999999999985 466677655667778889999774 6777665 35555 46899999999999
Q ss_pred cccccccCCCCCcEEeeecCCCCCCCCCC----CCCCceEEecCCCCCCCCCCCCcCCceEeccCCcCCCCCcc
Q 004707 408 SLPVSIKQLSQLSSLDLSDCNMLRSLPEL----PSCLGFLNLSGCNMLQSLPELPLRLRRLRAGNCKLLQSLPE 477 (734)
Q Consensus 408 ~lp~~l~~l~~L~~L~L~~n~~l~~lp~~----~~~L~~L~Ls~n~~l~~lp~l~~~L~~L~l~~c~~L~~l~~ 477 (734)
++|..+...++|+.|++.+|+.++.+|.. .++|+.|++++|++..--+..+.+|+.|.+.++..++.+|.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCC
Confidence 99998888889999999988888888853 36899999999987643334678899999999998888884
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=2.5e-17 Score=163.01 Aligned_cols=176 Identities=19% Similarity=0.219 Sum_probs=119.1
Q ss_pred cEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCCC
Q 004707 279 KHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRCR 357 (734)
Q Consensus 279 ~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~~ 357 (734)
+.++.+++.++.+|..+ .++|++|++++|.+.+..+..++++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-
Confidence 34556666666666543 34666777776665544444566667777777777776666554 356677777777764
Q ss_pred CCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCCCCccccc-ccCCCCCcEEeeecCCCCCCCCC
Q 004707 358 NLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNSFESLPVS-IKQLSQLSSLDLSDCNMLRSLPE 435 (734)
Q Consensus 358 ~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~ 435 (734)
.+..+++..+..+++|++|++++|.++++|.. +..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-- 164 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-- 164 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT--
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC--
Confidence 34455655567788888888888888876654 67788888888888888877764 577888888888888766533
Q ss_pred CCCCCceEEecCCCCCCCCCCCCcCC
Q 004707 436 LPSCLGFLNLSGCNMLQSLPELPLRL 461 (734)
Q Consensus 436 ~~~~L~~L~Ls~n~~l~~lp~l~~~L 461 (734)
++|+.|+++.|.+.|.+|.....+
T Consensus 165 --~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 165 --PGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp --TTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred --CCHHHHHHHHHhCCceeeccCccc
Confidence 356777777777777777644433
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=1.6e-17 Score=188.30 Aligned_cols=180 Identities=25% Similarity=0.310 Sum_probs=152.3
Q ss_pred CCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccC
Q 004707 253 SLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADG 332 (734)
Q Consensus 253 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~ 332 (734)
+|+.|+|++|.+.+ +|..+ .++|++|+|++|.|+.+| ..+++|++|++++|.+.+ +|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 89999999987655 77755 378999999999999999 468999999999987766 888 665 999999999
Q ss_pred cccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCccccc
Q 004707 333 SAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPVS 412 (734)
Q Consensus 333 n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~ 412 (734)
|.++.+|. .+++|+.|++++|. +..+|. .+++|+.|+|++|.++++|. +. ++|+.|+|++|.|+.+|.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 99999998 68999999999965 555775 57899999999999999998 65 999999999999999998
Q ss_pred ccCCCCC-------cEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCCCC
Q 004707 413 IKQLSQL-------SSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLPEL 457 (734)
Q Consensus 413 l~~l~~L-------~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp~l 457 (734)
+.. +| +.|+|++|.+. .+|.. .++|+.|+|++|++.+.+|..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 654 77 99999999876 46642 478999999999998876653
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1.1e-16 Score=167.04 Aligned_cols=179 Identities=20% Similarity=0.327 Sum_probs=155.2
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLG 300 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~ 300 (734)
......+.+++.|++++|.. ..++. +..+++|+.|++++|.+.+. +. +..+++|++|++++|.++.+|. +..+++
T Consensus 39 ~~~~~~l~~L~~L~l~~~~i-~~~~~-~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 39 AVTQNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDLSS-LKDLKK 113 (291)
T ss_dssp EECHHHHHTCCEEECTTSCC-CCCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred ccchhhcCcccEEEccCCCc-ccChh-HhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCChh-hccCCC
Confidence 34567889999999999865 45554 88999999999999977654 44 8999999999999999999876 899999
Q ss_pred CcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeec
Q 004707 301 LESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRD 380 (734)
Q Consensus 301 L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~ 380 (734)
|++|++++|.+.+ + +.+..+++|++|++++|.++.+ ..+..+++|+.|++++|. +..+++ +..+++|+.|++++
T Consensus 114 L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCC
Confidence 9999999987655 4 4588999999999999999988 678999999999999964 566665 88999999999999
Q ss_pred CCCCCCCccCCCCCCCcEEeeccCCCCcccc
Q 004707 381 CAVTDIPQEIGCLSSLEELDLSGNSFESLPV 411 (734)
Q Consensus 381 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 411 (734)
|.++++|. +..+++|+.|++++|.++..|.
T Consensus 188 N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 188 NHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred CcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 99999875 8899999999999999887653
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=5.3e-17 Score=186.01 Aligned_cols=174 Identities=21% Similarity=0.325 Sum_probs=127.1
Q ss_pred ccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccce
Q 004707 248 FCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAY 327 (734)
Q Consensus 248 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 327 (734)
+..+++|+.|++++|.+. .+| .+..+++|+.|+|++|.++.+|+ +..+++|+.|+|++|.+.+ +| .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 456777777777776543 344 46777777777777777777766 7777777777777765443 44 4777777888
Q ss_pred eeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCC
Q 004707 328 ILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 328 L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 407 (734)
|+|++|.+..++ .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+.+++. +..+++|+.|+|++|.++
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG--GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch--hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 888777777764 47777888888887754 44443 26778888888888888887655 778888888888888888
Q ss_pred cccccccCCCCCcEEeeecCCCCCC
Q 004707 408 SLPVSIKQLSQLSSLDLSDCNMLRS 432 (734)
Q Consensus 408 ~lp~~l~~l~~L~~L~L~~n~~l~~ 432 (734)
.+| .+..+++|+.|+|++|++.+.
T Consensus 189 ~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BCG-GGTTCTTCSEEECCSEEEECC
T ss_pred CCh-HHccCCCCCEEEccCCcCcCC
Confidence 875 577888888888888877653
No 99
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=7.3e-19 Score=195.93 Aligned_cols=182 Identities=20% Similarity=0.210 Sum_probs=79.2
Q ss_pred HHHhhcCeeecCCccccc----cccccccCCCCCcEEEecCCcCCCcCch-hhhCCC----cCcEEEeecCCCc-----c
Q 004707 225 RRVLKHNKLDLRDCRRLK----RISTRFCKLKSLVDLFLHGCLNLERFPE-ILEKME----HLKHIYLQRTAIT-----E 290 (734)
Q Consensus 225 ~~l~~l~~L~L~~~~~~~----~~p~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~----~L~~L~L~~n~l~-----~ 290 (734)
..+.++++|++++|.... .++..+..+++|++|+|++|.+....+. ....++ +|++|+|++|.++ .
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 344455555555554322 2344444555555555555543332221 122233 4555555555554 2
Q ss_pred cCccccCCCCCcEeeecCCCCCCCCCcc-----cCCCCccceeeccCccccc-----CCccccCCCCCcEEEcCCCCCCC
Q 004707 291 LPSSFENLLGLESLSVRGCSKLDKLPDN-----IGNLESLAYILADGSAISQ-----LPSSVADSNVLRYLWFPRCRNLV 360 (734)
Q Consensus 291 lp~~i~~l~~L~~L~Ls~~~~~~~lp~~-----l~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~ 360 (734)
+|..+..+++|++|++++|.+....+.. ....++|++|++++|.++. ++..+..+++|+.|++++|. +.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-IN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cc
Confidence 3444555555555555555432221111 1123345555555555442 23334444555555555543 21
Q ss_pred ccCcccC-----CCCCCccEEEeecCCCCC-----CCccCCCCCCCcEEeeccCCCC
Q 004707 361 SLPPLLL-----SGLSSLECLHLRDCAVTD-----IPQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 361 ~l~~~~l-----~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 407 (734)
......+ ...++|++|++++|.+++ ++..+..+++|++|++++|.++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 1110001 013345555555555443 2333444455555555555444
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=7.2e-17 Score=158.28 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=89.7
Q ss_pred cCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCcccee
Q 004707 249 CKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYI 328 (734)
Q Consensus 249 ~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L 328 (734)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 46677777777776544 455 4667777777777777666554 46677777777777776666666667777777777
Q ss_pred eccCccccc-CCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCC
Q 004707 329 LADGSAISQ-LPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSF 406 (734)
Q Consensus 329 ~l~~n~l~~-lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l 406 (734)
++++|.++. .|..++.+++|+.|++++|..++.++. +..+++|+.|++++|.+++++ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 777776663 455555555555555555443444432 444445555555555444443 344444444444444443
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=3.1e-19 Score=198.99 Aligned_cols=220 Identities=23% Similarity=0.255 Sum_probs=104.4
Q ss_pred cCeeecCCccccc----cccccccCCCCCcEEEecCCcCCCcCchhhh-----CCCcCcEEEeecCCCcc-----cCccc
Q 004707 230 HNKLDLRDCRRLK----RISTRFCKLKSLVDLFLHGCLNLERFPEILE-----KMEHLKHIYLQRTAITE-----LPSSF 295 (734)
Q Consensus 230 l~~L~L~~~~~~~----~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~-----~l~~L~~L~L~~n~l~~-----lp~~i 295 (734)
+++|++++|.... .+|..+..+++|++|+|++|.+....+..+. ..++|++|++++|.++. ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 5556666554431 3455555556666666665553322222111 13445566665555552 23334
Q ss_pred cCCCCCcEeeecCCCCCCCCCcccC-----CCCccceeeccCccccc-----CCccccCCCCCcEEEcCCCCCCCc----
Q 004707 296 ENLLGLESLSVRGCSKLDKLPDNIG-----NLESLAYILADGSAISQ-----LPSSVADSNVLRYLWFPRCRNLVS---- 361 (734)
Q Consensus 296 ~~l~~L~~L~Ls~~~~~~~lp~~l~-----~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~---- 361 (734)
..+++|++|++++|.+....+..+. ..++|++|++++|.++. ++..+..+++|+.|++++|. ++.
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~ 245 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMA 245 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHH
Confidence 4555566666655543322222221 23455556665555553 34455555556666665543 221
Q ss_pred -cCcccCCCCCCccEEEeecCCCCC-----CCccCCCCCCCcEEeeccCCCCc-----cccccc-CCCCCcEEeeecCCC
Q 004707 362 -LPPLLLSGLSSLECLHLRDCAVTD-----IPQEIGCLSSLEELDLSGNSFES-----LPVSIK-QLSQLSSLDLSDCNM 429 (734)
Q Consensus 362 -l~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~-~l~~L~~L~L~~n~~ 429 (734)
+.+.....+++|++|++++|.+++ ++..+..+++|++|++++|.++. +...+. ..++|+.|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 112222345556666666665554 44445555556666666555541 111111 124555555555554
Q ss_pred CCC----CCC---CCCCCceEEecCCCC
Q 004707 430 LRS----LPE---LPSCLGFLNLSGCNM 450 (734)
Q Consensus 430 l~~----lp~---~~~~L~~L~Ls~n~~ 450 (734)
.+. ++. ..++|+.|++++|.+
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 332 111 124555566665544
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=7.3e-18 Score=181.88 Aligned_cols=217 Identities=14% Similarity=0.082 Sum_probs=165.2
Q ss_pred eecCCccccccccccccCCCCCcEEEecCCcCCCcCc----hhhhCCC-cCcEEEeecCCCccc-CccccCC-----CCC
Q 004707 233 LDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFP----EILEKME-HLKHIYLQRTAITEL-PSSFENL-----LGL 301 (734)
Q Consensus 233 L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p----~~~~~l~-~L~~L~L~~n~l~~l-p~~i~~l-----~~L 301 (734)
++++.+...+.+|..+...++|++|+|++|.+....+ ..+..++ +|++|+|++|.++.. +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5788888888888877777779999999998766655 6788888 899999999999865 3344443 899
Q ss_pred cEeeecCCCCCCCCCccc----CCC-CccceeeccCcccccCCcc-----ccC-CCCCcEEEcCCCCCCC----ccCccc
Q 004707 302 ESLSVRGCSKLDKLPDNI----GNL-ESLAYILADGSAISQLPSS-----VAD-SNVLRYLWFPRCRNLV----SLPPLL 366 (734)
Q Consensus 302 ~~L~Ls~~~~~~~lp~~l----~~l-~~L~~L~l~~n~l~~lp~~-----i~~-l~~L~~L~l~~~~~l~----~l~~~~ 366 (734)
++|+|++|.+.+..+..+ ..+ ++|++|++++|.++..+.. +.. .++|++|++++|.... .++..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~- 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI- 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence 999999998776666543 344 8999999999999866542 344 3699999999975332 22222
Q ss_pred CCCCC-CccEEEeecCCCCCCCc-----cCCCC-CCCcEEeeccCCCCc-----ccccccC-CCCCcEEeeecCCCCCCC
Q 004707 367 LSGLS-SLECLHLRDCAVTDIPQ-----EIGCL-SSLEELDLSGNSFES-----LPVSIKQ-LSQLSSLDLSDCNMLRSL 433 (734)
Q Consensus 367 l~~l~-~L~~L~Ls~n~l~~lp~-----~l~~l-~~L~~L~Ls~n~l~~-----lp~~l~~-l~~L~~L~L~~n~~l~~l 433 (734)
+..++ +|++|+|++|++++... .+..+ ++|+.|+|++|.++. ++..+.. .++|+.|+|++|.+...-
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 89999999999986432 34455 599999999999986 7777766 459999999999876543
Q ss_pred C-------CCCCCCceEEecCCCC
Q 004707 434 P-------ELPSCLGFLNLSGCNM 450 (734)
Q Consensus 434 p-------~~~~~L~~L~Ls~n~~ 450 (734)
+ ...++|+.|++++|.+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCc
Confidence 3 3457799999999973
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=3.9e-18 Score=184.05 Aligned_cols=225 Identities=15% Similarity=0.100 Sum_probs=170.2
Q ss_pred hhcCeeecCCcccccccc----ccccCCC-CCcEEEecCCcCCCcCchhhhCC-----CcCcEEEeecCCCcccCcc---
Q 004707 228 LKHNKLDLRDCRRLKRIS----TRFCKLK-SLVDLFLHGCLNLERFPEILEKM-----EHLKHIYLQRTAITELPSS--- 294 (734)
Q Consensus 228 ~~l~~L~L~~~~~~~~~p----~~~~~l~-~L~~L~L~~~~~~~~~p~~~~~l-----~~L~~L~L~~n~l~~lp~~--- 294 (734)
..+++|++++|......+ ..+.+++ +|++|+|++|.+.+..+..+..+ ++|++|+|++|.++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 349999999998665555 6788898 99999999998877767666664 9999999999999865543
Q ss_pred --ccCC-CCCcEeeecCCCCCCCCCcc----cCC-CCccceeeccCcccc-----cCCccccCCC-CCcEEEcCCCCCCC
Q 004707 295 --FENL-LGLESLSVRGCSKLDKLPDN----IGN-LESLAYILADGSAIS-----QLPSSVADSN-VLRYLWFPRCRNLV 360 (734)
Q Consensus 295 --i~~l-~~L~~L~Ls~~~~~~~lp~~----l~~-l~~L~~L~l~~n~l~-----~lp~~i~~l~-~L~~L~l~~~~~l~ 360 (734)
+..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.++ .++..+..++ +|+.|++++|. ++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LA 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-Cc
Confidence 5555 89999999999876655443 334 369999999999998 4556667776 99999999975 44
Q ss_pred ccCcc----cCCCC-CCccEEEeecCCCCC-----CCccCCC-CCCCcEEeeccCCCCccc-----ccccCCCCCcEEee
Q 004707 361 SLPPL----LLSGL-SSLECLHLRDCAVTD-----IPQEIGC-LSSLEELDLSGNSFESLP-----VSIKQLSQLSSLDL 424 (734)
Q Consensus 361 ~l~~~----~l~~l-~~L~~L~Ls~n~l~~-----lp~~l~~-l~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~L 424 (734)
...+. .+..+ ++|++|+|++|.+++ ++..+.. .++|++|+|++|.++..+ ..+..+++|+.|+|
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 33331 13345 599999999999987 5666655 459999999999998654 34578899999999
Q ss_pred ecCCCCCCCC-------C---CCCCCceEEecCCCCCCC
Q 004707 425 SDCNMLRSLP-------E---LPSCLGFLNLSGCNMLQS 453 (734)
Q Consensus 425 ~~n~~l~~lp-------~---~~~~L~~L~Ls~n~~l~~ 453 (734)
++|.+.+..+ . ..++|+.|++++|++...
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9998432211 1 335577788888865443
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.4e-16 Score=156.27 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=128.5
Q ss_pred hCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCccccc-CCccccCCCCCcEE
Q 004707 273 EKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQ-LPSSVADSNVLRYL 351 (734)
Q Consensus 273 ~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-lp~~i~~l~~L~~L 351 (734)
..+++|++|++++|.++.+| .+..+++|++|++++|. ...+ ..+..+++|++|++++|.++. .|..++.+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 66789999999999999999 69999999999999984 3344 468999999999999999985 78889999999999
Q ss_pred EcCCCCCCCccCcccCCCCCCccEEEeecCC-CCCCCccCCCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCC
Q 004707 352 WFPRCRNLVSLPPLLLSGLSSLECLHLRDCA-VTDIPQEIGCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 352 ~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l 430 (734)
++++|......+.. +..+++|++|++++|. ++++| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 99997654444443 7889999999999998 87887 6888999999999999999887 7888999999999998754
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=5.5e-16 Score=153.23 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=85.5
Q ss_pred CCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeeecCCCCCCCCCcccCCCCccceeec
Q 004707 252 KSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILA 330 (734)
Q Consensus 252 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 330 (734)
++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+.+..+..++++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4566666666555444444455556666666666655555443 355555555555555444333333455555555555
Q ss_pred cCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCCCCcc
Q 004707 331 DGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNSFESL 409 (734)
Q Consensus 331 ~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l 409 (734)
++|.++.+| +..+..+++|+.|++++|.++++|.. +..+++|+.|++++|.+.
T Consensus 108 ~~N~l~~~~------------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 108 NTNQLQSLP------------------------DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp CSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCCcCcccC------------------------HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--
Confidence 555554443 33345555666666666666554443 455666666666666433
Q ss_pred cccccCCCCCcEEeeecCCCCCCCCCCCCCC
Q 004707 410 PVSIKQLSQLSSLDLSDCNMLRSLPELPSCL 440 (734)
Q Consensus 410 p~~l~~l~~L~~L~L~~n~~l~~lp~~~~~L 440 (734)
+.+++|+.|+++.|++.+.+|....++
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ----cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 234456666666666666666544433
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=7e-16 Score=155.06 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=113.4
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCcc-ccCCCCCcEEEcCCC
Q 004707 278 LKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS-VADSNVLRYLWFPRC 356 (734)
Q Consensus 278 L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~-i~~l~~L~~L~l~~~ 356 (734)
.+.++.+++.++.+|..+. ++|++|+|++|.+.+..|..+.++++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777788888887653 7888888888887777777788888888888888888877654 466777777777774
Q ss_pred CCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCC
Q 004707 357 RNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 357 ~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~ 431 (734)
.+..+++..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++..
T Consensus 99 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 99 -QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 455666655677788888888888888777777778888888888888877764 36677777777777776554
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=8.2e-16 Score=176.13 Aligned_cols=179 Identities=21% Similarity=0.333 Sum_probs=155.3
Q ss_pred chhHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCC
Q 004707 221 PKEIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLG 300 (734)
Q Consensus 221 ~~~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~ 300 (734)
...+..+..++.|++++|.. ..+|. +..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++.+| .+..+++
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i-~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~ 110 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKK 110 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCC-CCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTT
T ss_pred ccchhcCCCCCEEECcCCCC-CCChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCC
Confidence 34567888999999999864 45564 8899999999999998765444 889999999999999999987 5899999
Q ss_pred CcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeec
Q 004707 301 LESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRD 380 (734)
Q Consensus 301 L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~ 380 (734)
|++|+|++|.+.+ ++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|. +..+++ +..+++|+.|+|++
T Consensus 111 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 111 LKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CCEEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcC
Confidence 9999999987665 44 589999999999999999988 678999999999999975 555555 88999999999999
Q ss_pred CCCCCCCccCCCCCCCcEEeeccCCCCcccc
Q 004707 381 CAVTDIPQEIGCLSSLEELDLSGNSFESLPV 411 (734)
Q Consensus 381 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 411 (734)
|.+.++| .+..+++|+.|+|++|.++..|.
T Consensus 185 N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 185 NHISDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp SCCCBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCCCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 9999985 68899999999999999987664
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=7.9e-17 Score=165.56 Aligned_cols=165 Identities=23% Similarity=0.305 Sum_probs=87.5
Q ss_pred CeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCC
Q 004707 231 NKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCS 310 (734)
Q Consensus 231 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~ 310 (734)
..++++++.. ..++ .+..+++|+.|++++|.+ ..+| .+..+++|++|+|++|.++.+|. +.++++|++|++++|
T Consensus 22 ~~l~l~~~~i-~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N- 95 (263)
T 1xeu_A 22 VKQNLGKQSV-TDLV-SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN- 95 (263)
T ss_dssp HHHHHTCSCT-TSEE-CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-
T ss_pred HHHHhcCCCc-cccc-chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-
Confidence 3344544432 2333 245555556666555533 2333 34555555555555555555544 555555555555554
Q ss_pred CCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccC
Q 004707 311 KLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEI 390 (734)
Q Consensus 311 ~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l 390 (734)
.++.+|.... ++|+.|++++| .+..++. +..+++|+.|++++|++++++ .+
T Consensus 96 -----------------------~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~-~l 146 (263)
T 1xeu_A 96 -----------------------RLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKSIV-ML 146 (263)
T ss_dssp -----------------------CCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCBCG-GG
T ss_pred -----------------------ccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCCCh-HH
Confidence 3333332211 44444444443 2222322 555666666666666666664 45
Q ss_pred CCCCCCcEEeeccCCCCcccccccCCCCCcEEeeecCCCCC
Q 004707 391 GCLSSLEELDLSGNSFESLPVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 391 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~l~ 431 (734)
+.+++|+.|++++|.++.+ ..+..+++|+.|++++|++..
T Consensus 147 ~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 6666777777777776666 456666677777777666543
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.2e-18 Score=196.28 Aligned_cols=192 Identities=18% Similarity=0.116 Sum_probs=103.0
Q ss_pred HHhhcCeeecCCccccccccccccCCCCCcEEEecCCc-------------CCCcCchhhhCCCcCcEEE-eecCCCccc
Q 004707 226 RVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCL-------------NLERFPEILEKMEHLKHIY-LQRTAITEL 291 (734)
Q Consensus 226 ~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~-------------~~~~~p~~~~~l~~L~~L~-L~~n~l~~l 291 (734)
....++.|+|++|.. +.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..+
T Consensus 347 ~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 345566677776643 4667777777777777765553 3444555666666666666 444433222
Q ss_pred Ccc------ccC--CCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccC
Q 004707 292 PSS------FEN--LLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLP 363 (734)
Q Consensus 292 p~~------i~~--l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~ 363 (734)
+.. +.. ...|++|+|++|.+.+ +|. ++++++|+.|++++|.++.+|..++.+++|+.|++++|. +..+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc
Confidence 210 000 1135566666654333 454 556666666666666666666555555555555555533 33344
Q ss_pred cccCCCCCCccEEEeecCCCCCC--CccCCCCCCCcEEeeccCCCCcccccc----cCCCCCcEEe
Q 004707 364 PLLLSGLSSLECLHLRDCAVTDI--PQEIGCLSSLEELDLSGNSFESLPVSI----KQLSQLSSLD 423 (734)
Q Consensus 364 ~~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~ 423 (734)
.++.+++|+.|+|++|.++++ |..++.+++|+.|+|++|.++.+|+.+ ..+++|+.|+
T Consensus 503 --~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp --GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred --ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 255555555555555555554 555555555555555555555544432 2245555554
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=1.4e-15 Score=151.94 Aligned_cols=147 Identities=19% Similarity=0.274 Sum_probs=88.2
Q ss_pred EEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccC-CccccCCCCCcEEEcCCCCC
Q 004707 280 HIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQL-PSSVADSNVLRYLWFPRCRN 358 (734)
Q Consensus 280 ~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~ 358 (734)
.++++++.++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+..+ |..+..+++|++|++++| .
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 44455555555554432 4555555555544443334455555555555555555544 444555555555555553 3
Q ss_pred CCccCcccCCCCCCccEEEeecCCCCCC-CccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCC
Q 004707 359 LVSLPPLLLSGLSSLECLHLRDCAVTDI-PQEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 359 l~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~ 429 (734)
+..+|+..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 4455555566777777777777777775 4557777777888888777777665 366677777777777764
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=150.09 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=85.8
Q ss_pred EEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCC-cccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCC
Q 004707 280 HIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLP-DNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCR 357 (734)
Q Consensus 280 ~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~ 357 (734)
.+++++|.++.+|..+. ..+++|+|++|.+.+..| ..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence 45555555555554332 234555555544433322 224555555555555555554443 4555555555555553
Q ss_pred CCCccCcccCCCCCCccEEEeecCCCCCC-CccCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCC
Q 004707 358 NLVSLPPLLLSGLSSLECLHLRDCAVTDI-PQEIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 358 ~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~ 431 (734)
.+..+++..+.++++|++|+|++|.++.+ |..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|++..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 23444444466677777777777777764 55667777777777777777765 5566777777777777776543
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=5.8e-18 Score=192.77 Aligned_cols=180 Identities=23% Similarity=0.223 Sum_probs=140.1
Q ss_pred hCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCC-------------CCCCCCcccCCCCccceee-ccCcccccC
Q 004707 273 EKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCS-------------KLDKLPDNIGNLESLAYIL-ADGSAISQL 338 (734)
Q Consensus 273 ~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~-------------~~~~lp~~l~~l~~L~~L~-l~~n~l~~l 338 (734)
..+++|+.|+|++|.++.+|..++++++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45678888888888888888888888888888886653 4566677778888888887 555544333
Q ss_pred Cc------cccC--CCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCCCCccc
Q 004707 339 PS------SVAD--SNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNSFESLP 410 (734)
Q Consensus 339 p~------~i~~--l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 410 (734)
+. .+.. ...|+.|++++| .+..+|. ++.+++|+.|+|++|.++.+|..++.+++|+.|+|++|.++.+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc
Confidence 22 1111 125889999986 5666775 78899999999999999999999999999999999999999988
Q ss_pred ccccCCCCCcEEeeecCCCCCCC-CCC---CCCCceEEecCCCCCCCCCC
Q 004707 411 VSIKQLSQLSSLDLSDCNMLRSL-PEL---PSCLGFLNLSGCNMLQSLPE 456 (734)
Q Consensus 411 ~~l~~l~~L~~L~L~~n~~l~~l-p~~---~~~L~~L~Ls~n~~l~~lp~ 456 (734)
.++.+++|+.|+|++|.+.+.. |.. +++|+.|+|++|++.+..|.
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 8899999999999999887765 643 47889999999988766553
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1.6e-15 Score=155.70 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=113.7
Q ss_pred hHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCc
Q 004707 223 EIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLE 302 (734)
Q Consensus 223 ~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 302 (734)
.+..+.+++.|++++|. +..+| .+..+++|+.|+|++|.+.+. +. +..+++|++|++++|.++.+|.... ++|+
T Consensus 36 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 57889999999999985 45667 588999999999999976554 44 8999999999999999999886433 8889
Q ss_pred EeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCC
Q 004707 303 SLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCA 382 (734)
Q Consensus 303 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~ 382 (734)
+|++++|.+.+ ++ .++.+++|++|++++|.++.++ . +..+++|+.|++++|.
T Consensus 110 ~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~-------------------------l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 110 RLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV-M-------------------------LGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG-G-------------------------GGGCTTCCEEECTTSC
T ss_pred EEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh-H-------------------------HccCCCCCEEECCCCc
Confidence 99998876544 43 4777777777777777766554 3 3445556666666666
Q ss_pred CCCCCccCCCCCCCcEEeeccCCCCccc
Q 004707 383 VTDIPQEIGCLSSLEELDLSGNSFESLP 410 (734)
Q Consensus 383 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 410 (734)
++++ ..+..+++|+.|++++|.++..|
T Consensus 162 i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 162 ITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred Ccch-HHhccCCCCCEEeCCCCcccCCc
Confidence 6655 45566666777777777666554
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=6.9e-15 Score=147.75 Aligned_cols=150 Identities=22% Similarity=0.304 Sum_probs=101.6
Q ss_pred cCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeeecC
Q 004707 230 HNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSVRG 308 (734)
Q Consensus 230 l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls~ 308 (734)
...++.+++ .++.+|..+. ++|+.|+|++|.+.+..|..+..+++|++|+|++|.++.+|.. +..+++|++|+|++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345777664 4566776543 7888888888887777777788888888888888888877754 57788888888888
Q ss_pred CCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc
Q 004707 309 CSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ 388 (734)
Q Consensus 309 ~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~ 388 (734)
|.+.+..+..+..+++|++|++++|.+..+|..+..+++ |+.|+|++|+++.+|.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~-------------------------L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTH-------------------------LTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT-------------------------CSEEECCSSCCCCCCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCC-------------------------CCEEECCCCcCCccCH
Confidence 766655555567777777777777777776665555444 5555555555555442
Q ss_pred -cCCCCCCCcEEeeccCCCC
Q 004707 389 -EIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 389 -~l~~l~~L~~L~Ls~n~l~ 407 (734)
.+..+++|+.|++++|.+.
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBC
T ss_pred HHHhCCCCCCEEEeeCCCcc
Confidence 3455556666666666554
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=2.5e-15 Score=161.90 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=74.4
Q ss_pred CcEEEeecCCCcccCcc-cc-CCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcC
Q 004707 278 LKHIYLQRTAITELPSS-FE-NLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFP 354 (734)
Q Consensus 278 L~~L~L~~n~l~~lp~~-i~-~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~ 354 (734)
++.|+|++|.|+.++.. +. ++++|++|+|++|.+.+..|..+.++++|++|++++|.+..++. .+..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 45555555555544433 22 45555555555544444334445555555555555555554433 23444555555554
Q ss_pred CCCCCCccCcccCCCCCCccEEEeecCCCCCCCccC----CCCCCCcEEeeccCCCCcccc-cccCCCC--CcEEeeecC
Q 004707 355 RCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEI----GCLSSLEELDLSGNSFESLPV-SIKQLSQ--LSSLDLSDC 427 (734)
Q Consensus 355 ~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~--L~~L~L~~n 427 (734)
+|. +..+++..+.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|.|+.+|. .+..++. |+.|+|++|
T Consensus 121 ~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 432 33333333555566666666666666555443 345666666666666665553 3344443 244555555
Q ss_pred C
Q 004707 428 N 428 (734)
Q Consensus 428 ~ 428 (734)
+
T Consensus 200 ~ 200 (361)
T 2xot_A 200 P 200 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=2.2e-15 Score=162.35 Aligned_cols=169 Identities=22% Similarity=0.263 Sum_probs=138.9
Q ss_pred cEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccC-CCCccceeeccCcccccCCc-cccCCCCCcEEEcCCC
Q 004707 279 KHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIG-NLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRC 356 (734)
Q Consensus 279 ~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~-~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~ 356 (734)
+.++++++.++.+|..+. ..++.|+|++|.+.+..+..+. ++++|++|++++|.+..++. .+..+++|+.|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 688999999999998664 4689999999987776667677 99999999999999998874 6889999999999996
Q ss_pred CCCCccCcccCCCCCCccEEEeecCCCCCC-CccCCCCCCCcEEeeccCCCCcccccc----cCCCCCcEEeeecCCCCC
Q 004707 357 RNLVSLPPLLLSGLSSLECLHLRDCAVTDI-PQEIGCLSSLEELDLSGNSFESLPVSI----KQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 357 ~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~n~~l~ 431 (734)
. +..+++..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|++.+
T Consensus 99 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred c-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 4 7778877789999999999999999985 667999999999999999999998875 578999999999998664
Q ss_pred CCC-CC---CCC--CceEEecCCCCC
Q 004707 432 SLP-EL---PSC--LGFLNLSGCNML 451 (734)
Q Consensus 432 ~lp-~~---~~~--L~~L~Ls~n~~l 451 (734)
+| .. ++. |+.|+|++|++.
T Consensus 178 -l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 -LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -cCHHHhhhccHhhcceEEecCCCcc
Confidence 33 21 122 356777777543
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=9.8e-15 Score=145.66 Aligned_cols=149 Identities=23% Similarity=0.313 Sum_probs=112.2
Q ss_pred cEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc-cccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCc
Q 004707 255 VDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS-SFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGS 333 (734)
Q Consensus 255 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n 333 (734)
+.++++++. +..+|..+. ++|+.|++++|.++.+|. .|..+++|++|+|++|.+.+..|..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 455665543 344554433 567777777777777765 4777788888888887776666777888888888888888
Q ss_pred ccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc-cCCCCCCCcEEeeccCCCC
Q 004707 334 AISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ-EIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 334 ~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 407 (734)
.++.+|.. +..+++|+.|++++| .+..+++..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88877765 467888888888875 4555655568889999999999999998765 4888999999999999876
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=2.6e-16 Score=181.07 Aligned_cols=243 Identities=15% Similarity=0.037 Sum_probs=172.3
Q ss_pred HHhhcCeeecCCcccccc----ccccccCCCCCcEEEecCCcCC----CcCchhhhCCCcCcEEEeecCCCcccCccccC
Q 004707 226 RVLKHNKLDLRDCRRLKR----ISTRFCKLKSLVDLFLHGCLNL----ERFPEILEKMEHLKHIYLQRTAITELPSSFEN 297 (734)
Q Consensus 226 ~l~~l~~L~L~~~~~~~~----~p~~~~~l~~L~~L~L~~~~~~----~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~ 297 (734)
.+.+|++|+|++|..... ++..+..+++|+.|++++|... +.++..+.++++|+.|++++|.+..+|..+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 567888999998875443 4445567889999999888765 34566677889999999999988888888888
Q ss_pred CCCCcEeeecCCCCC---CCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCc-cCcccCCCCCCc
Q 004707 298 LLGLESLSVRGCSKL---DKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVS-LPPLLLSGLSSL 373 (734)
Q Consensus 298 l~~L~~L~Ls~~~~~---~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~-l~~~~l~~l~~L 373 (734)
+++|++|+++++... ...+..+..+++|+.|.++++....+|..+..+++|++|++++|. +.. .....+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCC
Confidence 999999999864333 344556788889999998887777888888889999999999887 332 222235778889
Q ss_pred cEEEeecCCCCC--CCccCCCCCCCcEEeecc-----------CCCC--cccccccCCCCCcEEeeecCCCCCCCC----
Q 004707 374 ECLHLRDCAVTD--IPQEIGCLSSLEELDLSG-----------NSFE--SLPVSIKQLSQLSSLDLSDCNMLRSLP---- 434 (734)
Q Consensus 374 ~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~-----------n~l~--~lp~~l~~l~~L~~L~L~~n~~l~~lp---- 434 (734)
++|+++ +.+.+ ++.....+++|++|++++ |.++ .++.....+++|++|+++.|.+.+..+
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 999988 44432 444445678899999983 4565 344444568888888887766654322
Q ss_pred CCCCCCceEEecC---CCCCCCCCC---------CCcCCceEeccCCc
Q 004707 435 ELPSCLGFLNLSG---CNMLQSLPE---------LPLRLRRLRAGNCK 470 (734)
Q Consensus 435 ~~~~~L~~L~Ls~---n~~l~~lp~---------l~~~L~~L~l~~c~ 470 (734)
...++|+.|++++ |+..+..|. ..++|++|++++|.
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 2356788888873 333333321 24578888887654
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=144.73 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=95.7
Q ss_pred EEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCc--cccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCc
Q 004707 256 DLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPS--SFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGS 333 (734)
Q Consensus 256 ~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n 333 (734)
.+++++|.+ +.+|..+. ..+++|+|++|.++.++. .+.++++|++|+|++|.+.+..+..++++++|++|++++|
T Consensus 15 ~l~~s~n~l-~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKL-NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCc-ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 455555432 33444332 234566666666665532 2556666666666666555544555666666666666666
Q ss_pred ccccCCcc-ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCC-CccCCCCCCCcEEeeccCCCC
Q 004707 334 AISQLPSS-VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDI-PQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 334 ~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~ 407 (734)
.++.++.. +..+++|++|++++|. +..+++..+.++++|+.|+|++|+++++ |..+..+++|+.|+|++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66655543 5666777777776643 4445444477888899999999988886 677888999999999999876
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=5e-16 Score=182.25 Aligned_cols=191 Identities=21% Similarity=0.206 Sum_probs=111.6
Q ss_pred CCCCcEEEecCCcCCCcCchhhhCCCcCcEE-----EeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCcc
Q 004707 251 LKSLVDLFLHGCLNLERFPEILEKMEHLKHI-----YLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESL 325 (734)
Q Consensus 251 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L-----~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L 325 (734)
.+.++.|+|.++.... .+..+.....|+.+ ++..|.+...|..+..+++|+.|+|++|.+. .+|..+.++++|
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 3567888887765444 34333222233332 3333444445667888999999999997755 788888899999
Q ss_pred ceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCccCCCCCCCcEEeeccCC
Q 004707 326 AYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQEIGCLSSLEELDLSGNS 405 (734)
Q Consensus 326 ~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 405 (734)
++|+|++|.++.+|..++.+++|+.|+|++|. +..+|.. ++++++|++|+|++|.++.+|..++.+++|+.|+|++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 99999999999999989999999999999866 4577766 788899999999999998899889999999999999999
Q ss_pred CC-cccccccCCC-CCcEEeeecCCCCCCCCCCCCCCceEEecCC
Q 004707 406 FE-SLPVSIKQLS-QLSSLDLSDCNMLRSLPELPSCLGFLNLSGC 448 (734)
Q Consensus 406 l~-~lp~~l~~l~-~L~~L~L~~n~~l~~lp~~~~~L~~L~Ls~n 448 (734)
++ .+|..+..+. .+..|+|++|.+.+.+|. .|+.|++++|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEeecc
Confidence 88 4455554332 223477888888776654 5667777776
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.4e-14 Score=137.91 Aligned_cols=137 Identities=20% Similarity=0.285 Sum_probs=89.8
Q ss_pred CCCCCcEEEecCCcCC-CcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCcccee
Q 004707 250 KLKSLVDLFLHGCLNL-ERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYI 328 (734)
Q Consensus 250 ~l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L 328 (734)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3466777777777655 46676667777777777777777766 556777777777777776666566656566666666
Q ss_pred eccCcccccCC--ccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc----cCCCCCCCcEEeec
Q 004707 329 LADGSAISQLP--SSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ----EIGCLSSLEELDLS 402 (734)
Q Consensus 329 ~l~~n~l~~lp--~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls 402 (734)
++++|.++.+| .. +..+++|+.|++++|.++++|. .+..+++|+.|+++
T Consensus 101 ~Ls~N~l~~~~~~~~-------------------------l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 101 NLSGNKLKDISTLEP-------------------------LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp ECBSSSCCSSGGGGG-------------------------GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred eccCCccCcchhHHH-------------------------HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 66666666554 23 4455566666666666666554 56666666666666
Q ss_pred cCCCCccccc
Q 004707 403 GNSFESLPVS 412 (734)
Q Consensus 403 ~n~l~~lp~~ 412 (734)
+|.+.++|.+
T Consensus 156 ~n~~~~~~~~ 165 (168)
T 2ell_A 156 DREDQEAPDS 165 (168)
T ss_dssp ETTSCBCCSS
T ss_pred CCChhhcccc
Confidence 6666666543
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.5e-15 Score=176.26 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=83.1
Q ss_pred CchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCC
Q 004707 268 FPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNV 347 (734)
Q Consensus 268 ~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~ 347 (734)
.|..+..+++|+.|+|++|.+..+|..+.++++|++|+|++|.+. .+|..++++++|++|+|++|.++.+|..++.+++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 455566666666666666666666666666666666666666544 6666666666666666666666666666666666
Q ss_pred CcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCC-CCccCCCCC-CCcEEeeccCCCC-cccccccCCCCCcEEee
Q 004707 348 LRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTD-IPQEIGCLS-SLEELDLSGNSFE-SLPVSIKQLSQLSSLDL 424 (734)
Q Consensus 348 L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 424 (734)
|++|+|++| .++.+|.. ++.+++|+.|+|++|.+++ +|..+..+. .+..|+|++|.++ .+|. .|+.|++
T Consensus 295 L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp CSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 666666664 34566655 6666666666666666665 333332221 1123556666665 3332 3445555
Q ss_pred ecC
Q 004707 425 SDC 427 (734)
Q Consensus 425 ~~n 427 (734)
++|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 554
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=1.6e-15 Score=174.35 Aligned_cols=245 Identities=16% Similarity=0.107 Sum_probs=137.6
Q ss_pred HHHHhhcCeeecCCcccc----ccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeec--------------
Q 004707 224 IRRVLKHNKLDLRDCRRL----KRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQR-------------- 285 (734)
Q Consensus 224 i~~l~~l~~L~L~~~~~~----~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~-------------- 285 (734)
...+.++++|++++|... ..++..+.++++|+.|++++|...+ +|..+.++++|++|+++.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 345567777777776654 3445555677777777777765433 556666666666666653
Q ss_pred -------------CCCcccCccccCCCCCcEeeecCCCCCCCC-CcccCCCCccceeeccCcccc--cCCccccCCCCCc
Q 004707 286 -------------TAITELPSSFENLLGLESLSVRGCSKLDKL-PDNIGNLESLAYILADGSAIS--QLPSSVADSNVLR 349 (734)
Q Consensus 286 -------------n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~l-p~~l~~l~~L~~L~l~~n~l~--~lp~~i~~l~~L~ 349 (734)
+....+|..+..+++|++|++++|...... +..+..+++|++|+++ +.+. .++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 222234444445555555555555522211 1224555556665555 2222 2333334566677
Q ss_pred EEEcCC----------CCCCCccC-cccCCCCCCccEEEeecCCCCC-CCccCCC-CCCCcEEeec----cCCCCccc--
Q 004707 350 YLWFPR----------CRNLVSLP-PLLLSGLSSLECLHLRDCAVTD-IPQEIGC-LSSLEELDLS----GNSFESLP-- 410 (734)
Q Consensus 350 ~L~l~~----------~~~l~~l~-~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~Ls----~n~l~~lp-- 410 (734)
+|++++ |+.++... ......+++|++|+++.|.+++ .+..++. +++|+.|+++ .|.++..|
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 777763 44444321 1112346777777777776664 2333333 6777788775 45666432
Q ss_pred ----ccccCCCCCcEEeeecCCC--CC----CCCCCCCCCceEEecCCCCCC-CCC---CCCcCCceEeccCCc
Q 004707 411 ----VSIKQLSQLSSLDLSDCNM--LR----SLPELPSCLGFLNLSGCNMLQ-SLP---ELPLRLRRLRAGNCK 470 (734)
Q Consensus 411 ----~~l~~l~~L~~L~L~~n~~--l~----~lp~~~~~L~~L~Ls~n~~l~-~lp---~l~~~L~~L~l~~c~ 470 (734)
..+..+++|+.|++++|.. .+ .+....++|+.|++++|.+.+ .++ ...++|+.|++++|+
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 3355677888888876542 21 112235678888888887653 222 234578888888886
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=2.4e-14 Score=136.21 Aligned_cols=130 Identities=23% Similarity=0.251 Sum_probs=89.6
Q ss_pred CcCcEEEeecCCCc--ccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEc
Q 004707 276 EHLKHIYLQRTAIT--ELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWF 353 (734)
Q Consensus 276 ~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l 353 (734)
++|++|++++|.++ .+|..+..+++|++|++++|. +..+ ..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------------------------l~~~-~~~~~l~~L~~L~L 78 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------------------------LISV-SNLPKLPKLKKLEL 78 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------------------------CCCC-SSCCCCSSCCEEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------------------------CCCh-hhhccCCCCCEEEC
Confidence 45555555555555 555555555555555555554 4433 33444455555555
Q ss_pred CCCCCCCccCcccCCCCCCccEEEeecCCCCCCC--ccCCCCCCCcEEeeccCCCCcccc----cccCCCCCcEEeeecC
Q 004707 354 PRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIP--QEIGCLSSLEELDLSGNSFESLPV----SIKQLSQLSSLDLSDC 427 (734)
Q Consensus 354 ~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~n 427 (734)
++|.....+|. .+..+++|+.|+|++|.++++| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 79 s~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 79 SENRIFGGLDM-LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ESCCCCSCCCH-HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred cCCcCchHHHH-HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 55433222332 2556888999999999999876 689999999999999999999887 7899999999999999
Q ss_pred CCCC
Q 004707 428 NMLR 431 (734)
Q Consensus 428 ~~l~ 431 (734)
....
T Consensus 158 ~~~~ 161 (168)
T 2ell_A 158 EDQE 161 (168)
T ss_dssp TSCB
T ss_pred Chhh
Confidence 8643
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=4.2e-14 Score=131.68 Aligned_cols=124 Identities=23% Similarity=0.258 Sum_probs=71.0
Q ss_pred CcCcEEEeecCCCc--ccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEc
Q 004707 276 EHLKHIYLQRTAIT--ELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWF 353 (734)
Q Consensus 276 ~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l 353 (734)
++|+.|++++|.++ .+|..+..+++|++|++++|.+.+. ..++++++|++|++++|.++.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~---------------- 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG---------------- 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS----------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc----------------
Confidence 44555555555555 4555555555555555555443332 334444444444444444443
Q ss_pred CCCCCCCccCcccCCCCCCccEEEeecCCCCCCC--ccCCCCCCCcEEeeccCCCCcccc----cccCCCCCcEEeee
Q 004707 354 PRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIP--QEIGCLSSLEELDLSGNSFESLPV----SIKQLSQLSSLDLS 425 (734)
Q Consensus 354 ~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~ 425 (734)
.+|. .+..+++|++|++++|.++++| ..++.+++|++|++++|.++.+|. .+..+++|+.|+++
T Consensus 79 -------~~~~-~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 -------GLEV-LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -------CTHH-HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -------hHHH-HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 2222 2344666666677677766643 566777777777777777776665 46677777777765
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=1.7e-13 Score=133.49 Aligned_cols=126 Identities=18% Similarity=0.289 Sum_probs=58.8
Q ss_pred cEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCc-ccCCCCccceeeccCcccccC-CccccCCCCCcEEEcCCC
Q 004707 279 KHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPD-NIGNLESLAYILADGSAISQL-PSSVADSNVLRYLWFPRC 356 (734)
Q Consensus 279 ~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~ 356 (734)
+.++++++.++++|..+.. +|++|++++|.+.+..+. .++++++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444444444444443322 444444444433222221 144444444444444444433 233333344444444332
Q ss_pred CCCCccCcccCCCCCCccEEEeecCCCCC-CCccCCCCCCCcEEeeccCCCC
Q 004707 357 RNLVSLPPLLLSGLSSLECLHLRDCAVTD-IPQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 357 ~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~ 407 (734)
.+..+++..+.++++|++|+|++|++++ .|..+..+++|+.|+|++|.++
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 2223333335556666666666666665 3555666666666666666655
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=6.8e-14 Score=130.24 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=61.5
Q ss_pred CCCCcEEEecCCcCC-CcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceee
Q 004707 251 LKSLVDLFLHGCLNL-ERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYIL 329 (734)
Q Consensus 251 l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ 329 (734)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..++++++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 355666666666554 45666666666666666666666665 4466666666666666666555666555566666666
Q ss_pred ccCcccccCC--ccccCCCCCcEEEcCC
Q 004707 330 ADGSAISQLP--SSVADSNVLRYLWFPR 355 (734)
Q Consensus 330 l~~n~l~~lp--~~i~~l~~L~~L~l~~ 355 (734)
+++|.++.+| ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 6666665543 3344444444444433
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=2.2e-13 Score=130.67 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEc
Q 004707 274 KMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWF 353 (734)
Q Consensus 274 ~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l 353 (734)
++.+|+.|++++|.++.+|......++|++|++++|.+.+. ..++.+++|++|++++|.++.
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~---------------- 78 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR---------------- 78 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE----------------
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc----------------
Confidence 44555555555555555543222222555555555443322 234444444444444444443
Q ss_pred CCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc--cCCCCCCCcEEeeccCCCCccccc----ccCCCCCcEEeeecC
Q 004707 354 PRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ--EIGCLSSLEELDLSGNSFESLPVS----IKQLSQLSSLDLSDC 427 (734)
Q Consensus 354 ~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~n 427 (734)
+|+..+..+++|+.|++++|.+.++|. .++.+++|+.|++++|.++.+|.. +..+++|+.|++++|
T Consensus 79 --------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 79 --------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp --------ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred --------cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 443333556667777777777766665 566777777777777777777664 677777777777776
Q ss_pred CC
Q 004707 428 NM 429 (734)
Q Consensus 428 ~~ 429 (734)
..
T Consensus 151 ~~ 152 (176)
T 1a9n_A 151 KL 152 (176)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=1.7e-14 Score=165.92 Aligned_cols=246 Identities=16% Similarity=0.132 Sum_probs=131.8
Q ss_pred HHhhcCeeecCCcccccccccccc-CCCCCcEEEecCCcCCCc--CchhhhCCCcCcEEEeecCCCcc-----cCccccC
Q 004707 226 RVLKHNKLDLRDCRRLKRISTRFC-KLKSLVDLFLHGCLNLER--FPEILEKMEHLKHIYLQRTAITE-----LPSSFEN 297 (734)
Q Consensus 226 ~l~~l~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~--~p~~~~~l~~L~~L~L~~n~l~~-----lp~~i~~ 297 (734)
.+.++++|++++|......+..+. .+++|+.|+|++|...+. ++....++++|++|+|++|.++. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 344566666666654444444443 466666666666643332 44444566666666666665442 2222335
Q ss_pred CCCCcEeeecCCCCCCCCC-----cccCCCCccceeeccCc-ccccCCccccCCCCCcEEEcCCCC--------------
Q 004707 298 LLGLESLSVRGCSKLDKLP-----DNIGNLESLAYILADGS-AISQLPSSVADSNVLRYLWFPRCR-------------- 357 (734)
Q Consensus 298 l~~L~~L~Ls~~~~~~~lp-----~~l~~l~~L~~L~l~~n-~l~~lp~~i~~l~~L~~L~l~~~~-------------- 357 (734)
+++|++|++++|. +.++ ..+.++++|++|++++| .+..+|..+..+++|+.|+++.+.
T Consensus 183 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp CCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred CCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 5666666666654 1111 11233566666666665 333455555555666666544332
Q ss_pred -----CCC-----------ccCcccCCCCCCccEEEeecCCCCC--CCccCCCCCCCcEEeeccCCCC--cccccccCCC
Q 004707 358 -----NLV-----------SLPPLLLSGLSSLECLHLRDCAVTD--IPQEIGCLSSLEELDLSGNSFE--SLPVSIKQLS 417 (734)
Q Consensus 358 -----~l~-----------~l~~~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~ 417 (734)
.+. .++.. +..+++|++|+|++|.+++ ++..+..+++|+.|++++| ++ .++.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGG-HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccchhhHHHH-HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 111 11111 2246778888888887664 3334567788888888877 43 2333334577
Q ss_pred CCcEEeeecCC--------CCCC-----CCCCCCCCceEEecCCCCCCCCC----CCCcCCceEecc-----CCcCCCCC
Q 004707 418 QLSSLDLSDCN--------MLRS-----LPELPSCLGFLNLSGCNMLQSLP----ELPLRLRRLRAG-----NCKLLQSL 475 (734)
Q Consensus 418 ~L~~L~L~~n~--------~l~~-----lp~~~~~L~~L~Ls~n~~l~~lp----~l~~~L~~L~l~-----~c~~L~~l 475 (734)
+|+.|+|.+|. ..+. +....++|+.|.++.|.+....+ ...++|+.|++. +|..++..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 78888885431 1110 11124567777666665543211 123567777777 45555543
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=1.7e-12 Score=126.43 Aligned_cols=126 Identities=21% Similarity=0.325 Sum_probs=78.0
Q ss_pred cEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCcc--ccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEee
Q 004707 302 ESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSS--VADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLR 379 (734)
Q Consensus 302 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~--i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls 379 (734)
++++++++.+ +.+|..+.. +|++|++++|.++.++.. +..+++|++|++++|. +..+++..+.++++|++|+|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECC
Confidence 5677777543 566665543 677777777777766653 6666677777776643 344433346666666666666
Q ss_pred cCCCCCCCc-cCCCCCCCcEEeeccCCCCcc-cccccCCCCCcEEeeecCCCCC
Q 004707 380 DCAVTDIPQ-EIGCLSSLEELDLSGNSFESL-PVSIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 380 ~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~l~ 431 (734)
+|++++++. .++.+++|++|+|++|+++.+ |..+..+++|+.|+|++|++.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 666666433 366666666666666666644 4455666666666666665544
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=1.1e-14 Score=167.62 Aligned_cols=244 Identities=15% Similarity=0.116 Sum_probs=132.7
Q ss_pred HHhhcCeeecCCcc-cc--ccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecC----------------
Q 004707 226 RVLKHNKLDLRDCR-RL--KRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRT---------------- 286 (734)
Q Consensus 226 ~l~~l~~L~L~~~~-~~--~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n---------------- 286 (734)
.+.++++|++++|. .. ..++..+.++++|+.|++++|...+.+|..+..+++|++|+++.+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 34467777777664 01 112222344577777777776444445666666666666664432
Q ss_pred ---------------CCcccCccccCCCCCcEeeecCCCCCCC-CCcccCCCCccceeeccCcccc--cCCccccCCCCC
Q 004707 287 ---------------AITELPSSFENLLGLESLSVRGCSKLDK-LPDNIGNLESLAYILADGSAIS--QLPSSVADSNVL 348 (734)
Q Consensus 287 ---------------~l~~lp~~i~~l~~L~~L~Ls~~~~~~~-lp~~l~~l~~L~~L~l~~n~l~--~lp~~i~~l~~L 348 (734)
....+|..+..+++|++|++++|.+... ++..+.++++|++|++++| +. .++.....+++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 1123344444678889999988874322 2233567888888888887 33 233333457888
Q ss_pred cEEEcCC--------CCCCCccCccc-CCCCCCccEEEeecCCCCC-CCccC-CCCCCCcEEeec--c----CCCCccc-
Q 004707 349 RYLWFPR--------CRNLVSLPPLL-LSGLSSLECLHLRDCAVTD-IPQEI-GCLSSLEELDLS--G----NSFESLP- 410 (734)
Q Consensus 349 ~~L~l~~--------~~~l~~l~~~~-l~~l~~L~~L~Ls~n~l~~-lp~~l-~~l~~L~~L~Ls--~----n~l~~lp- 410 (734)
+.|++.+ |+.++...... ..++++|+.|.++.|.+++ .+..+ ..+++|+.|+++ + +.++..|
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 8888843 33333211111 1236677777777666664 12222 246677777777 3 4555332
Q ss_pred -----ccccCCCCCcEEeeecCCCCCC-CC---CCCCCCceEEecCCCCCCCCC----CCCcCCceEeccCCcC
Q 004707 411 -----VSIKQLSQLSSLDLSDCNMLRS-LP---ELPSCLGFLNLSGCNMLQSLP----ELPLRLRRLRAGNCKL 471 (734)
Q Consensus 411 -----~~l~~l~~L~~L~L~~n~~l~~-lp---~~~~~L~~L~Ls~n~~l~~lp----~l~~~L~~L~l~~c~~ 471 (734)
..+..+++|+.|+|++ .+... ++ ...++|+.|++++|.+.+..+ ...++|+.|++++|+.
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 2245566777777755 22211 11 124556777777666532211 1135666666666654
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.5e-12 Score=125.36 Aligned_cols=64 Identities=30% Similarity=0.395 Sum_probs=37.0
Q ss_pred CCCCCCccEEEeecCCCCCCCc-cCCCCCCCcEEeeccCCCCccccc-ccCCCCCcEEeeecCCCC
Q 004707 367 LSGLSSLECLHLRDCAVTDIPQ-EIGCLSSLEELDLSGNSFESLPVS-IKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 367 l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~l 430 (734)
+.++++|++|+|++|.++.++. .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++.
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 4555555566666666555433 355566666666666666655543 455666666666666543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.4e-12 Score=124.36 Aligned_cols=125 Identities=23% Similarity=0.349 Sum_probs=95.0
Q ss_pred cEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCC
Q 004707 279 KHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCR 357 (734)
Q Consensus 279 ~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~ 357 (734)
+.++++++.++.+|..+. ++|++|++++|.+ ..+|..+.++++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 567888888888887653 5788888888654 4677778888888888888888887764 5777888888888874
Q ss_pred CCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCCCC
Q 004707 358 NLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 358 ~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 407 (734)
.+..+++..+.++++|+.|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 45666666677888888888888888877653 677888888888888765
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=5.9e-12 Score=120.72 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=74.2
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCC
Q 004707 278 LKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCR 357 (734)
Q Consensus 278 L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~ 357 (734)
.+.++++++.++.+|..+ .++|++|++++|.+.+..+..++++++|++|++++|.++.+|..
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------- 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG---------------- 70 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----------------
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh----------------
Confidence 456777777777777543 35677777777665544444456666666666666666555432
Q ss_pred CCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCCCCcccccc-cCCCCCcEEeeecCCCCC
Q 004707 358 NLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNSFESLPVSI-KQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 358 ~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~~l~ 431 (734)
.+..+++|++|++++|.++++|.. ++.+++|++|++++|.++.+|..+ ..+++|+.|+|++|++.+
T Consensus 71 --------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 71 --------VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp --------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --------HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 234455555555555555554433 455556666666666665555442 455666666666665554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=6.2e-13 Score=127.56 Aligned_cols=133 Identities=18% Similarity=0.172 Sum_probs=99.9
Q ss_pred ccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccce
Q 004707 248 FCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAY 327 (734)
Q Consensus 248 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 327 (734)
+.++.+|+.|++++|.+. .+|......++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|..++.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 668999999999999765 5566444445999999999999988 57999999999999998766443344488899999
Q ss_pred eeccCcccccCCc--cccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc----CCCCCCCcEEee
Q 004707 328 ILADGSAISQLPS--SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE----IGCLSSLEELDL 401 (734)
Q Consensus 328 L~l~~n~l~~lp~--~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L 401 (734)
|++++|.++.+|. .+. .+++|+.|++++|.++.+|.. ++.+++|+.|++
T Consensus 93 L~L~~N~i~~~~~~~~l~-------------------------~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLA-------------------------SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp EECCSCCCCCGGGGGGGG-------------------------GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred EECCCCcCCcchhhHhhh-------------------------cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 9999988887765 343 455556666666666555553 566677777777
Q ss_pred ccCCCC
Q 004707 402 SGNSFE 407 (734)
Q Consensus 402 s~n~l~ 407 (734)
++|.+.
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 776654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=7.5e-15 Score=143.95 Aligned_cols=125 Identities=23% Similarity=0.320 Sum_probs=74.8
Q ss_pred hhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcE
Q 004707 271 ILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRY 350 (734)
Q Consensus 271 ~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~ 350 (734)
.+..+++|++|++++|.++.+| .+.++++|++|++++|.+. .+|..+..+++|++|++++|.++.+| .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~--------- 110 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-G--------- 110 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-H---------
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-c---------
Confidence 5666666666666666666666 5666666666666665433 45555555555666666665555443 2
Q ss_pred EEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc--cCCCCCCCcEEeeccCCCCccccc-----------ccCCC
Q 004707 351 LWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ--EIGCLSSLEELDLSGNSFESLPVS-----------IKQLS 417 (734)
Q Consensus 351 L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~-----------l~~l~ 417 (734)
+..+++|+.|++++|.+++++. .+..+++|++|++++|.++..++. +..++
T Consensus 111 ----------------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 111 ----------------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp ----------------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred ----------------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 3344556666666666665443 466667777777777766543222 56677
Q ss_pred CCcEEe
Q 004707 418 QLSSLD 423 (734)
Q Consensus 418 ~L~~L~ 423 (734)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 777776
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=4.6e-12 Score=134.42 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=52.5
Q ss_pred CCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc-cCCCCCCCc-EEeeccCCCCccc-ccccCCCCCcE
Q 004707 345 SNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ-EIGCLSSLE-ELDLSGNSFESLP-VSIKQLSQLSS 421 (734)
Q Consensus 345 l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~-~L~Ls~n~l~~lp-~~l~~l~~L~~ 421 (734)
+++|+.|++++| .+..++...|.++.+|+.|+|.+| ++.++. .|..+++|+ .+++.+ +++.++ ..+.++++|+.
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 566777777653 356666666667777777777665 555543 366666776 777766 566654 34566677777
Q ss_pred EeeecCCCC
Q 004707 422 LDLSDCNML 430 (734)
Q Consensus 422 L~L~~n~~l 430 (734)
|++++|.+.
T Consensus 302 l~l~~n~i~ 310 (329)
T 3sb4_A 302 VLATGDKIT 310 (329)
T ss_dssp EEECSSCCC
T ss_pred EEeCCCccC
Confidence 777665543
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=1.5e-11 Score=117.79 Aligned_cols=128 Identities=23% Similarity=0.281 Sum_probs=104.6
Q ss_pred cceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeecc
Q 004707 325 LAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSG 403 (734)
Q Consensus 325 L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~ 403 (734)
.+.++++++.+..+|..+. ++|+.|++++|. +..+++..+..+++|++|++++|.++.+|.. ++.+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4567777777777775543 688888888854 5667776678999999999999999998765 68999999999999
Q ss_pred CCCCccccc-ccCCCCCcEEeeecCCCCCCCCCC---CCCCceEEecCCCCCCCCC
Q 004707 404 NSFESLPVS-IKQLSQLSSLDLSDCNMLRSLPEL---PSCLGFLNLSGCNMLQSLP 455 (734)
Q Consensus 404 n~l~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~~---~~~L~~L~Ls~n~~l~~lp 455 (734)
|.++.+|.. +..+++|+.|++++|.+.+..+.. +++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999988875 688999999999999887544433 4789999999998877554
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=1.4e-11 Score=130.60 Aligned_cols=221 Identities=14% Similarity=0.174 Sum_probs=123.1
Q ss_pred HHhhcCeeecCCccccccccccccC-CCCCcEEEecCCcCC--C----c-------------C-chhhhC--------CC
Q 004707 226 RVLKHNKLDLRDCRRLKRISTRFCK-LKSLVDLFLHGCLNL--E----R-------------F-PEILEK--------ME 276 (734)
Q Consensus 226 ~l~~l~~L~L~~~~~~~~~p~~~~~-l~~L~~L~L~~~~~~--~----~-------------~-p~~~~~--------l~ 276 (734)
.+.+++.|.++++-....+. .+.. +++|+.|||++|.+. . . + +..|.+ ++
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hhCceeEEEEeccccHHHHH-HHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 35566677776542222221 1223 677777777777654 1 1 1 123344 56
Q ss_pred cCcEEEeecCCCcccCcc-ccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCccc----ccCC-ccccCCCCCc-
Q 004707 277 HLKHIYLQRTAITELPSS-FENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAI----SQLP-SSVADSNVLR- 349 (734)
Q Consensus 277 ~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l----~~lp-~~i~~l~~L~- 349 (734)
+|+.|+|.. .++.++.. |.++++|+.|++++|.....-+..|.++.++..+.+..+.. ..+. ..+..+..|+
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 666666666 55555543 56666666666666554444444455555555544433111 1110 1122222333
Q ss_pred EEEcCCCCCCCc-----------cC------------c-ccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccC
Q 004707 350 YLWFPRCRNLVS-----------LP------------P-LLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGN 404 (734)
Q Consensus 350 ~L~l~~~~~l~~-----------l~------------~-~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n 404 (734)
.+.+.....+.. +. . .....+++|+.|+|++|+++.+|.. |..+++|+.|+|.+|
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 222211110000 00 0 0001278899999999999888764 888999999999987
Q ss_pred CCCcccc-cccCCCCCc-EEeeecCCCCCCCCC----CCCCCceEEecCCCCC
Q 004707 405 SFESLPV-SIKQLSQLS-SLDLSDCNMLRSLPE----LPSCLGFLNLSGCNML 451 (734)
Q Consensus 405 ~l~~lp~-~l~~l~~L~-~L~L~~n~~l~~lp~----~~~~L~~L~Ls~n~~l 451 (734)
++.++. .+.++++|+ .|++.+ . +..++. ..++|+.|++++|.+.
T Consensus 261 -i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 261 -LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp -CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred -cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCccC
Confidence 887776 468899999 999987 3 444443 2367899998887554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=5.8e-14 Score=137.55 Aligned_cols=127 Identities=18% Similarity=0.111 Sum_probs=100.2
Q ss_pred HhhcCeeecCCccccccccc------cccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCC
Q 004707 227 VLKHNKLDLRDCRRLKRIST------RFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLG 300 (734)
Q Consensus 227 l~~l~~L~L~~~~~~~~~p~------~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~ 300 (734)
...+..++++.+...+.+|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++.+|..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 34455566666655555554 89999999999999987655 77 888999999999999999999988888899
Q ss_pred CcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCc--cccCCCCCcEEEcCCCC
Q 004707 301 LESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPS--SVADSNVLRYLWFPRCR 357 (734)
Q Consensus 301 L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~--~i~~l~~L~~L~l~~~~ 357 (734)
|++|++++|.+.+ +| .++.+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 9999999987654 66 58889999999999999987664 55566666666665543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=7e-11 Score=112.93 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=72.0
Q ss_pred cEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCC
Q 004707 279 KHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRN 358 (734)
Q Consensus 279 ~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~ 358 (734)
+.++++++.++.+|..+. ++|++|+|++|.+.+..|..++++++|++|++++|.++.+|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------------------ 74 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------------------ 74 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh------------------
Confidence 567777777777777653 677777777776666556666666666666666666555443
Q ss_pred CCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCCCCcccc
Q 004707 359 LVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNSFESLPV 411 (734)
Q Consensus 359 l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~ 411 (734)
..+.++++|+.|+|++|+++.+|.. +..+++|+.|+|++|.+...+.
T Consensus 75 ------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 75 ------GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ------hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 3345666777777777777776654 6677777777777777765554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.3e-10 Score=110.64 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=67.8
Q ss_pred CcEEEeecCCCcccCccccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCC
Q 004707 278 LKHIYLQRTAITELPSSFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCR 357 (734)
Q Consensus 278 L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~ 357 (734)
.+.+++++|.++.+|..+ .++|++|+|++|.+.+..|..++++++|++|++++|.++.+|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~------------------ 70 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP------------------ 70 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC------------------
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC------------------
Confidence 456777777777777655 266777777776665555555666666666666655555444
Q ss_pred CCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccCCCCcc
Q 004707 358 NLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGNSFESL 409 (734)
Q Consensus 358 ~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l 409 (734)
+..+.++++|++|+|++|+++.+|.. +..+++|+.|+|++|.++..
T Consensus 71 ------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 71 ------AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ------hhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 33355666777777777777776553 66777777777777766533
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.4e-10 Score=110.84 Aligned_cols=103 Identities=21% Similarity=0.380 Sum_probs=80.7
Q ss_pred ceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeeccC
Q 004707 326 AYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSGN 404 (734)
Q Consensus 326 ~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n 404 (734)
+.+++++|.++++|..+. ++|+.|++++|. +..+++..+.++++|+.|+|++|+++.+|.. +..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 567777777777777654 677777777744 5556555588888999999999999888765 578899999999999
Q ss_pred CCCccccc-ccCCCCCcEEeeecCCCCC
Q 004707 405 SFESLPVS-IKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 405 ~l~~lp~~-l~~l~~L~~L~L~~n~~l~ 431 (734)
+++.+|.. +..+++|+.|+|++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99988875 7888889888888887653
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=1.8e-10 Score=109.60 Aligned_cols=104 Identities=20% Similarity=0.343 Sum_probs=78.1
Q ss_pred cceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCcc-CCCCCCCcEEeecc
Q 004707 325 LAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQE-IGCLSSLEELDLSG 403 (734)
Q Consensus 325 L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~ 403 (734)
.+.+++++|.++++|..+. ++|+.|++++| .+..+++..+.++++|++|+|++|+++++|.. +..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777777777776553 67777777774 45555555577888888888888888887665 57888888888888
Q ss_pred CCCCccccc-ccCCCCCcEEeeecCCCCC
Q 004707 404 NSFESLPVS-IKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 404 n~l~~lp~~-l~~l~~L~~L~L~~n~~l~ 431 (734)
|+++.+|.. +..+++|+.|+|++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 888888764 7788888888888887654
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=7.7e-09 Score=112.36 Aligned_cols=211 Identities=14% Similarity=0.123 Sum_probs=146.8
Q ss_pred hcCeeecCCcccccccc-ccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCcEeeec
Q 004707 229 KHNKLDLRDCRRLKRIS-TRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLESLSVR 307 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~Ls 307 (734)
+++.+.+..+ +..++ .+|.+ .+|+.+.+.. .....-+..|.++.+|+.+++.+|.++.+|...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 5777777664 34443 34655 4688888875 333333467788888999999888888888774446888888887
Q ss_pred CCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCC---
Q 004707 308 GCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVT--- 384 (734)
Q Consensus 308 ~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~--- 384 (734)
.+ ....-...|.++++|+.+.+..+ +..++.....-.+|+.+.+. +.+..++...|.++++|+.+++.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP--NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE--TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC--CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 53 33333456788888888888764 56666655444788888884 3577787777888889999998887765
Q ss_pred --CCC-ccCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCCCCCC-CC--CCCceEEecCCCC
Q 004707 385 --DIP-QEIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLRSLPE-LP--SCLGFLNLSGCNM 450 (734)
Q Consensus 385 --~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~-~~--~~L~~L~Ls~n~~ 450 (734)
.++ ..|..+++|+.+.|. ++++.++. .+.++++|+.+.|..+ +..++. .+ .+|+.+++++|..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n~~ 357 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGTTP 357 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCSSC
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCCCC
Confidence 343 457788889998888 45777765 5677888888888654 333332 11 1677888877743
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=2.3e-11 Score=130.96 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=64.1
Q ss_pred CCCcEEEecCCcCCCcCchhhh-----CCCcCcEEEeecCCCcc--cCccccCCCCCcEeeecCCCCCCCCCccc-----
Q 004707 252 KSLVDLFLHGCLNLERFPEILE-----KMEHLKHIYLQRTAITE--LPSSFENLLGLESLSVRGCSKLDKLPDNI----- 319 (734)
Q Consensus 252 ~~L~~L~L~~~~~~~~~p~~~~-----~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l----- 319 (734)
++|+.|+|++|.+.......+. ..++|++|+|++|.++. +..-...+++|++|+|++|.+...-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555566655554332222211 12455555555555542 11112223445555555554332211111
Q ss_pred CCCCccceeeccCccccc-----CCccccCCCCCcEEEcCCCCCCCc-----cCcccCCCCCCccEEEeecCCCCC----
Q 004707 320 GNLESLAYILADGSAISQ-----LPSSVADSNVLRYLWFPRCRNLVS-----LPPLLLSGLSSLECLHLRDCAVTD---- 385 (734)
Q Consensus 320 ~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~-----l~~~~l~~l~~L~~L~Ls~n~l~~---- 385 (734)
...++|++|++++|.++. ++..+...++|++|+|++|. ++. +.. .+...++|++|+|++|.+++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHH
Confidence 123445555555555432 23333344444444444433 111 011 12333445555555555543
Q ss_pred -CCccCCCCCCCcEEeeccCCCC
Q 004707 386 -IPQEIGCLSSLEELDLSGNSFE 407 (734)
Q Consensus 386 -lp~~l~~l~~L~~L~Ls~n~l~ 407 (734)
++..+...++|++|+|++|.|+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 2222333445555555555544
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.93 E-value=2.1e-09 Score=114.53 Aligned_cols=100 Identities=24% Similarity=0.237 Sum_probs=54.5
Q ss_pred eccCc-ccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCC-ccCCCCCCCcEEeeccCCC
Q 004707 329 LADGS-AISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIP-QEIGCLSSLEELDLSGNSF 406 (734)
Q Consensus 329 ~l~~n-~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l 406 (734)
+.+++ .++.+|. +..+++|+.|+|++++.+..+++..+.++++|+.|+|++|+++++| ..|+.+++|+.|+|++|+|
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4555555 5555555555555444455555444556666666666666666543 3455666666666666666
Q ss_pred CcccccccCCCCCcEEeeecCCC
Q 004707 407 ESLPVSIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 407 ~~lp~~l~~l~~L~~L~L~~n~~ 429 (734)
+.+|..+.....|+.|+|.+|++
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCC
T ss_pred ceeCHHHcccCCceEEEeeCCCc
Confidence 66555433322366666665554
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=2.5e-08 Score=108.32 Aligned_cols=192 Identities=10% Similarity=0.141 Sum_probs=145.7
Q ss_pred hcCeeecCCccccccc-cccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEeee
Q 004707 229 KHNKLDLRDCRRLKRI-STRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESLSV 306 (734)
Q Consensus 229 ~l~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L 306 (734)
.++.+.+.. .+..+ +.+|.++++|+.+++.+|... .++.......+|+.+.|.. .++.++.. |.++++|+.+++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEec
Confidence 578888875 33444 467999999999999987544 4444433468999999985 48888655 889999999999
Q ss_pred cCCCCCCCCC-cccCCCCccceeeccCcccccCC-ccccCCCCCcEEEcCCCCC----CCccCcccCCCCCCccEEEeec
Q 004707 307 RGCSKLDKLP-DNIGNLESLAYILADGSAISQLP-SSVADSNVLRYLWFPRCRN----LVSLPPLLLSGLSSLECLHLRD 380 (734)
Q Consensus 307 s~~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~lp-~~i~~l~~L~~L~l~~~~~----l~~l~~~~l~~l~~L~~L~Ls~ 380 (734)
..+ +..++ ..|.+ .+|+.+.+ .+.+..++ ..+.++++|+.+.+.++.. ...++...|.++++|+.++|.
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred CCC--ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 873 34444 34555 78999999 45567664 4677899999999987532 235778889999999999998
Q ss_pred CCCCCCCc-cCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecCCCCC
Q 004707 381 CAVTDIPQ-EIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDCNMLR 431 (734)
Q Consensus 381 n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~l~ 431 (734)
++++.++. .|.++++|+.+.|..+ ++.++. .+.++ +|+.+++.+|....
T Consensus 309 ~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 309 ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 45777654 5888999999999654 777765 56778 99999999986544
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1e-08 Score=109.31 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=33.4
Q ss_pred cCchhhhCCCcCcEEEeec-CCCcccCc-cccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCC
Q 004707 267 RFPEILEKMEHLKHIYLQR-TAITELPS-SFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLP 339 (734)
Q Consensus 267 ~~p~~~~~l~~L~~L~L~~-n~l~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp 339 (734)
.+|. +..+++|++|+|++ |.|+.+|. .|++|++|++|+|++|.+.+..|..|+++++|++|+|++|.++.+|
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 3444 44444444445443 44444442 2444455555555544444444444444444444444444444443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=3.3e-10 Score=121.96 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=114.2
Q ss_pred HhhcCeeecCCcccccccccccc-----CCCCCcEEEecCCcCCCcC-chhhhCCCcCcEEEeecCCCccc-----Cccc
Q 004707 227 VLKHNKLDLRDCRRLKRISTRFC-----KLKSLVDLFLHGCLNLERF-PEILEKMEHLKHIYLQRTAITEL-----PSSF 295 (734)
Q Consensus 227 l~~l~~L~L~~~~~~~~~p~~~~-----~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~n~l~~l-----p~~i 295 (734)
...++.|++++|.........+. ..++|+.|+|++|.+.... ......+++|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 34688999999976543333332 2379999999999765432 22334567899999999999743 2223
Q ss_pred -cCCCCCcEeeecCCCCCC----CCCcccCCCCccceeeccCccccc-----CCccccCCCCCcEEEcCCCCCCCc----
Q 004707 296 -ENLLGLESLSVRGCSKLD----KLPDNIGNLESLAYILADGSAISQ-----LPSSVADSNVLRYLWFPRCRNLVS---- 361 (734)
Q Consensus 296 -~~l~~L~~L~Ls~~~~~~----~lp~~l~~l~~L~~L~l~~n~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~---- 361 (734)
...++|++|+|++|.+.. .++..+..+++|++|++++|.++. ++..+...++|+.|++++|.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 357899999999997643 345556788999999999999873 456777888999999999753221
Q ss_pred cCcccCCCCCCccEEEeecCCCCC
Q 004707 362 LPPLLLSGLSSLECLHLRDCAVTD 385 (734)
Q Consensus 362 l~~~~l~~l~~L~~L~Ls~n~l~~ 385 (734)
+... +...++|++|+|++|.+++
T Consensus 231 l~~~-L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARA-AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHH-HHHCSSCCEEECTTSSCCH
T ss_pred HHHH-HHhCCCCCEEeccCCCCCH
Confidence 2121 3456899999999999885
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=1.6e-08 Score=108.02 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=43.8
Q ss_pred CCCCccEEEeecCCCCC-CCcc---CCCCCCCcEEeeccCCCCc-----ccccccCCCCCcEEeeecCCCC
Q 004707 369 GLSSLECLHLRDCAVTD-IPQE---IGCLSSLEELDLSGNSFES-----LPVSIKQLSQLSSLDLSDCNML 430 (734)
Q Consensus 369 ~l~~L~~L~Ls~n~l~~-lp~~---l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~~l 430 (734)
.+++|+.|+|++|.+.+ .+.. ...+++|++|+|+.|.++. ++..+..+++|+.|+|++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 47888888888888764 1111 1357788888888888873 4555567788888888887653
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=6e-09 Score=111.26 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCCCcEEEcCCCCCCCccCccc--CCCCCCccEEEeecCCCCC-----CCccCCCCCCCcEEeeccCCCCc-ccccccC
Q 004707 344 DSNVLRYLWFPRCRNLVSLPPLL--LSGLSSLECLHLRDCAVTD-----IPQEIGCLSSLEELDLSGNSFES-LPVSIKQ 415 (734)
Q Consensus 344 ~l~~L~~L~l~~~~~l~~l~~~~--l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~ 415 (734)
.+++|+.|++.+|......+... ...+++|++|+|+.|.+.+ ++..+..+++|+.|+|++|.++. .-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46778888887765432111110 1247889999999998875 44445567899999999998872 1112221
Q ss_pred -CCCCcEEeeecCC
Q 004707 416 -LSQLSSLDLSDCN 428 (734)
Q Consensus 416 -l~~L~~L~L~~n~ 428 (734)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 3456676654
No 153
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.24 E-value=1.9e-06 Score=91.57 Aligned_cols=185 Identities=17% Similarity=0.121 Sum_probs=112.1
Q ss_pred EEEEEEeCCCChH-----H-HHhHhccCCCCCCCcEEEEEcCChhHHhhc-----------CC-CceEECCCCCHHHHHH
Q 004707 2 KVLIVLDDVNKDE-----Q-LEGLIGGLDQYGPGSRIVVTTRDKGVLENF-----------GV-EKIYRVNGLEFYEAFE 63 (734)
Q Consensus 2 k~LiVLDDV~~~~-----~-~~~l~~~~~~~~~GSrIivTTR~~~v~~~~-----------~~-~~~y~v~~L~~~~s~~ 63 (734)
+++|||||++... + +..+..... ..++.++|+|+|....+... +. ...+++.+|+.+|+.+
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 6899999996632 2 223322111 12477999999987653321 11 2578999999999999
Q ss_pred HHHHhhcC-CCCCchhHHHHHHHHHHHhCCCchHHHHHHhhcC-CcccHHHHHHHhhhhcCCCchhHHHHH-Hhhcc--c
Q 004707 64 LFYYFAFK-ENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDDLNRICESDIHDIHDIL-KISFN--E 138 (734)
Q Consensus 64 Lf~~~af~-~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~-~~~~W~~~l~~l~~~~~~~i~~i~~~L-~~Syd--~ 138 (734)
++...+-. +..+.+ . .++.+.++|+|+++..++..+. ....|+ .+..+....... +...+ +..++ .
T Consensus 217 ~l~~~~~~~~~~~~~-~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~~~~~~~ 287 (357)
T 2fna_A 217 FLRRGFQEADIDFKD-Y----EVVYEKIGGIPGWLTYFGFIYLDNKNLDF-AINQTLEYAKKL---ILKEFENFLHGREI 287 (357)
T ss_dssp HHHHHHHHHTCCCCC-H----HHHHHHHCSCHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHH---HHHHHHHHHTTCGG
T ss_pred HHHHHHHHcCCCCCc-H----HHHHHHhCCCHHHHHHHHHHHccccchHH-HHHHHHHHHHHH---HHHHHHHHhhcccc
Confidence 99864311 222222 2 7899999999999999988764 212222 122211110000 11111 22222 6
Q ss_pred CChhhhhhhhhhcccccCCChhHHHHHHH-hhc--------cchhHHHhhcCCceeeCCeEEe-cHHHHHH
Q 004707 139 LMPKMKSIFLDIACFFEGEDKDFVTRILD-DYG--------SYGLEVLIDKSLITVSHNCLRM-HDLLQEM 199 (734)
Q Consensus 139 L~~~~k~~fl~ia~f~~~~~~~~~~~~l~-~~~--------~~~i~~L~~ksli~~~~~~~~m-Hdll~~~ 199 (734)
|+...+.++..+|+ .. ..+.+...++ ..| ..+++.|+++++|....+.+++ |.++++.
T Consensus 288 l~~~~~~~l~~la~-g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 288 ARKRYLNIMRTLSK-CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp GHHHHHHHHHHHTT-CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred ccHHHHHHHHHHHc-CC--CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 88889999999998 22 4444443321 111 5678999999999887777775 6677653
No 154
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.10 E-value=1.9e-05 Score=83.45 Aligned_cols=182 Identities=19% Similarity=0.236 Sum_probs=111.0
Q ss_pred EEEEEEeCCCChH---------HHHhHhccCCCCCCCcEEEEEcCChhHHhhc-----------C-CCceEECCCCCHHH
Q 004707 2 KVLIVLDDVNKDE---------QLEGLIGGLDQYGPGSRIVVTTRDKGVLENF-----------G-VEKIYRVNGLEFYE 60 (734)
Q Consensus 2 k~LiVLDDV~~~~---------~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~-----------~-~~~~y~v~~L~~~~ 60 (734)
+++|||||++... .+..|...... .++.++|+|++...++... + ....+++.+|+.+|
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 6899999997643 23444332221 2578899999886643321 1 12479999999999
Q ss_pred HHHHHHHhhcCCC--CCchhHHHHHHHHHHHhCCCchHHHHHHhhcC-CcccHHHHHHHhhhhcCCCchhHHHHHHhhcc
Q 004707 61 AFELFYYFAFKEN--HCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDDLNRICESDIHDIHDILKISFN 137 (734)
Q Consensus 61 s~~Lf~~~af~~~--~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~-~~~~W~~~l~~l~~~~~~~i~~i~~~L~~Syd 137 (734)
+.+++... |+.. ... .+...++.+.++|+|+++..++..+. ....|+ .+..+... +...+.-.+.
T Consensus 208 ~~~~l~~~-~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~l~ 275 (350)
T 2qen_A 208 SVEFLKRG-FREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGR-AMKRTLEV-------AKGLIMGELE 275 (350)
T ss_dssp HHHHHHHH-HHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH-HHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhH-HHHHHHHH-------HHHHHHHHHH
Confidence 99998764 3221 122 24677899999999999999987643 112221 22221111 0111111122
Q ss_pred cC---ChhhhhhhhhhcccccCCChhHHHHHHH----hhc----cchhHHHhhcCCceeeCCeEEec-HHHHH
Q 004707 138 EL---MPKMKSIFLDIACFFEGEDKDFVTRILD----DYG----SYGLEVLIDKSLITVSHNCLRMH-DLLQE 198 (734)
Q Consensus 138 ~L---~~~~k~~fl~ia~f~~~~~~~~~~~~l~----~~~----~~~i~~L~~ksli~~~~~~~~mH-dll~~ 198 (734)
.+ +...+.++..+|+ . ......+...+. +.. ..+++.|.+.++|...++.++++ .++++
T Consensus 276 ~l~~~~~~~~~~l~~la~-g-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~ 346 (350)
T 2qen_A 276 ELRRRSPRYVDILRAIAL-G-YNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVAT 346 (350)
T ss_dssp HHHHHCHHHHHHHHHHHT-T-CCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHH
T ss_pred HHHhCChhHHHHHHHHHh-C-CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHH
Confidence 22 6788999999998 2 234445544442 111 56789999999998877778774 45554
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.02 E-value=0.00017 Score=77.92 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=19.1
Q ss_pred hHHHHhhcCeeecCCcccccccc-ccccCCCCCcEEEecC
Q 004707 223 EIRRVLKHNKLDLRDCRRLKRIS-TRFCKLKSLVDLFLHG 261 (734)
Q Consensus 223 ~i~~l~~l~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~ 261 (734)
.+..+.+|+.+.+..+ +..++ .+|.++++|+.+++..
T Consensus 66 AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPD 103 (394)
T ss_dssp TTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred HhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCC
Confidence 3444555556666432 23332 3466666666666644
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=1.6e-06 Score=83.22 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=42.5
Q ss_pred ccCCCCCcEEEecCC-cCCCc----CchhhhCCCcCcEEEeecCCCcc-----cCccccCCCCCcEeeecCCCCCCC---
Q 004707 248 FCKLKSLVDLFLHGC-LNLER----FPEILEKMEHLKHIYLQRTAITE-----LPSSFENLLGLESLSVRGCSKLDK--- 314 (734)
Q Consensus 248 ~~~l~~L~~L~L~~~-~~~~~----~p~~~~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~Ls~~~~~~~--- 314 (734)
+...++|++|+|++| .+... +...+...++|++|+|++|.|.. +...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445566666666665 33221 23334445556666666665541 233344445555566655543321
Q ss_pred -CCcccCCCCccceeec--cCcccc
Q 004707 315 -LPDNIGNLESLAYILA--DGSAIS 336 (734)
Q Consensus 315 -lp~~l~~l~~L~~L~l--~~n~l~ 336 (734)
+...+...++|++|++ ++|.++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 2233334444555555 444443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=1.7e-06 Score=83.06 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=35.4
Q ss_pred CCCccEEEeecCCCCC-----CCccCCCCCCCcEEee--ccCCCCc-----ccccccCCCCCcEEeeecCCC
Q 004707 370 LSSLECLHLRDCAVTD-----IPQEIGCLSSLEELDL--SGNSFES-----LPVSIKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 370 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~L~~n~~ 429 (734)
.++|++|+|++|.+.+ +...+...++|++|+| ++|.++. +...+...++|++|+|++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556666666666653 3444555566777777 6666652 344455556666666666653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=3.1e-06 Score=85.75 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=39.0
Q ss_pred cCCCCCcEEEecCCcCCC--cCchhhhCCCcCcEEEeecCCCcccCccccCCC--CCcEeeecCCCCCCCCC
Q 004707 249 CKLKSLVDLFLHGCLNLE--RFPEILEKMEHLKHIYLQRTAITELPSSFENLL--GLESLSVRGCSKLDKLP 316 (734)
Q Consensus 249 ~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~--~L~~L~Ls~~~~~~~lp 316 (734)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.|+.+. .+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 356667777777666555 44555566666666666666666542 233333 66666666666555444
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.77 E-value=0.00038 Score=75.07 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=37.5
Q ss_pred cCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc-cCCCCCCCcEEeeccCCCCcccc-cccCCCCCc
Q 004707 343 ADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ-EIGCLSSLEELDLSGNSFESLPV-SIKQLSQLS 420 (734)
Q Consensus 343 ~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~ 420 (734)
..+..|+.+.+.. ....+....+.++++|+.+.+. +.++.++. .|..+.+|+.+.|..+ ++.+.. .+.++++|+
T Consensus 262 ~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccEEeccc--ccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 3445555555543 2233444445555555555553 23444432 2445555555555432 444433 344555555
Q ss_pred EEeee
Q 004707 421 SLDLS 425 (734)
Q Consensus 421 ~L~L~ 425 (734)
.+.|.
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55554
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.76 E-value=0.00022 Score=76.87 Aligned_cols=195 Identities=15% Similarity=0.065 Sum_probs=100.1
Q ss_pred hHHHHhhcCeeecCCccccccccccccCCCCCcEEEecCCcCCCcCchhhhCCCcCcEEEeecCCCcccCccccCCCCCc
Q 004707 223 EIRRVLKHNKLDLRDCRRLKRISTRFCKLKSLVDLFLHGCLNLERFPEILEKMEHLKHIYLQRTAITELPSSFENLLGLE 302 (734)
Q Consensus 223 ~i~~l~~l~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 302 (734)
.+..+.+|+.+.+.++. ...-...|.++.+|+.+.+..+ ....-...+.++..|+.+.+..+. ..+........+|+
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGVK 233 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCC
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhcccCCCc
Confidence 45556677777776532 2222345777788888877654 222223455666667666655432 22333333445666
Q ss_pred EeeecCCCCCCCCCcccCCCCccceeeccCcccccCCccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCC
Q 004707 303 SLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCA 382 (734)
Q Consensus 303 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~ 382 (734)
.+.+... ....-...+..+.+|+.+.+..+...--...+..+..|+.+..... .++...+..+.+|+.+.+..+
T Consensus 234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-
T ss_pred eEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCce----eeccccccccccccccccccc-
Confidence 6666542 2211223455566666666655433322333445555555554331 233334555666666666433
Q ss_pred CCCCCc-cCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeecC
Q 004707 383 VTDIPQ-EIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSDC 427 (734)
Q Consensus 383 l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n 427 (734)
++.+++ .+..+++|+.++|.. .++.++. ++.++++|+.+.+..+
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT
T ss_pred cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc
Confidence 444432 355566666666643 3555543 4455666666666543
No 161
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.76 E-value=3e-05 Score=84.14 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=99.8
Q ss_pred CEEEEEEeCCCCh--------HHHHhHhccCCCC---C--CCcEEEEEcCChhHHhhcC---------CCceEECCCCCH
Q 004707 1 MKVLIVLDDVNKD--------EQLEGLIGGLDQY---G--PGSRIVVTTRDKGVLENFG---------VEKIYRVNGLEF 58 (734)
Q Consensus 1 kk~LiVLDDV~~~--------~~~~~l~~~~~~~---~--~GSrIivTTR~~~v~~~~~---------~~~~y~v~~L~~ 58 (734)
++++|||||++.. +.+..+...+... + ..-.||+|||+..+..... ....+++++++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 4789999999774 3344433322211 2 3344888998766432211 123499999999
Q ss_pred HHHHHHHHHh---hcCCCCCchhHHHHHHHHHHHhC------CCchHHHHHHhh-cC----------CcccHHHHHHHhh
Q 004707 59 YEAFELFYYF---AFKENHCPEDFKRDSRRVVKYAD------GNPLVLKVLGSS-LK----------RKSHWGNVLDDLN 118 (734)
Q Consensus 59 ~~s~~Lf~~~---af~~~~~~~~~~~l~~~i~~~c~------GlPLal~vlgs~-L~----------~~~~W~~~l~~l~ 118 (734)
++++++|... +|...... .+....++++++ |.|..+..+... .. +.+.+..++....
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 9999999754 44432222 345667888888 999655444332 11 1112222222111
Q ss_pred hhcCCCchhHHHHHHhhcccCChhhhhhhhhhccccc-C---CChhHHH----HHH-Hhhc---------cchhHHHhhc
Q 004707 119 RICESDIHDIHDILKISFNELMPKMKSIFLDIACFFE-G---EDKDFVT----RIL-DDYG---------SYGLEVLIDK 180 (734)
Q Consensus 119 ~~~~~~i~~i~~~L~~Syd~L~~~~k~~fl~ia~f~~-~---~~~~~~~----~~l-~~~~---------~~~i~~L~~k 180 (734)
. ...+.-+++.||..+|.++..+|.++. + .....+. .+. +..| ..+++.|++.
T Consensus 295 ~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 365 (412)
T 1w5s_A 295 A---------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSL 365 (412)
T ss_dssp --------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHT
T ss_pred c---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhC
Confidence 0 234556778999999999999998653 2 1222221 122 2222 3567889999
Q ss_pred CCceee
Q 004707 181 SLITVS 186 (734)
Q Consensus 181 sli~~~ 186 (734)
++|...
T Consensus 366 gli~~~ 371 (412)
T 1w5s_A 366 GLVDAK 371 (412)
T ss_dssp TSEEEE
T ss_pred CCEEee
Confidence 999765
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=6.5e-06 Score=83.38 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCCCccEEEeecCCCCCCCccCCCCC--CCcEEeeccCCCC
Q 004707 369 GLSSLECLHLRDCAVTDIPQEIGCLS--SLEELDLSGNSFE 407 (734)
Q Consensus 369 ~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~Ls~n~l~ 407 (734)
.+++|+.|+|++|.+.++ ..+..+. +|++|+|++|.+.
T Consensus 194 ~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 455555555555555543 1122222 5555555555554
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.59 E-value=0.0017 Score=69.90 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=43.7
Q ss_pred cCeeecCCccccccc-cccccCCCCCcEEEecCCc--CCCcC-chhhhCCCcCcEEEeecCCCcccCcc-ccCCCCCcEe
Q 004707 230 HNKLDLRDCRRLKRI-STRFCKLKSLVDLFLHGCL--NLERF-PEILEKMEHLKHIYLQRTAITELPSS-FENLLGLESL 304 (734)
Q Consensus 230 l~~L~L~~~~~~~~~-p~~~~~l~~L~~L~L~~~~--~~~~~-p~~~~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L 304 (734)
++.+.+... ++.+ ..+|.++++|+.+.+..+. .+..+ ...|.++.+|+.+.+.. .++.++.. |..+.+|+.+
T Consensus 66 L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcccccc
Confidence 455555432 2222 3346667777777665542 12222 23344555555544433 23344332 4555555555
Q ss_pred eecCCCCCCCCCcccCCCCccceeecc
Q 004707 305 SVRGCSKLDKLPDNIGNLESLAYILAD 331 (734)
Q Consensus 305 ~Ls~~~~~~~lp~~l~~l~~L~~L~l~ 331 (734)
.+.. .....-...+..+.+|+.+.+.
T Consensus 143 ~lp~-~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 143 TIPE-GVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred cccc-eeeeecccceeccccccccccc
Confidence 5543 1111112234444555554443
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=2.8e-05 Score=73.18 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred CcCcEEEeecCCCccc-CccccCCCCCcEeeecCCCC
Q 004707 276 EHLKHIYLQRTAITEL-PSSFENLLGLESLSVRGCSK 311 (734)
Q Consensus 276 ~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~Ls~~~~ 311 (734)
.+|+.||++++.|+.. -..+..+++|++|+|++|..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ 97 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY 97 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc
Confidence 3567777777666521 12245666666666666653
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=4.2e-05 Score=71.98 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=15.1
Q ss_pred CCcEEeeccC-CCC--cccccccCCCCCcEEeeecCC
Q 004707 395 SLEELDLSGN-SFE--SLPVSIKQLSQLSSLDLSDCN 428 (734)
Q Consensus 395 ~L~~L~Ls~n-~l~--~lp~~l~~l~~L~~L~L~~n~ 428 (734)
+|++|+|++| +++ .+ ..+.++++|++|+|++|.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCT
T ss_pred CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCC
Confidence 4555555554 244 12 123345555555555554
No 166
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.21 E-value=0.0026 Score=67.93 Aligned_cols=170 Identities=12% Similarity=0.103 Sum_probs=101.6
Q ss_pred EEEEEeCCCChHH---HHh-HhccCCCCCCCcEEEEEcCChhHHhhc------CCCceEECCCCCHHHHHHHHHHhh---
Q 004707 3 VLIVLDDVNKDEQ---LEG-LIGGLDQYGPGSRIVVTTRDKGVLENF------GVEKIYRVNGLEFYEAFELFYYFA--- 69 (734)
Q Consensus 3 ~LiVLDDV~~~~~---~~~-l~~~~~~~~~GSrIivTTR~~~v~~~~------~~~~~y~v~~L~~~~s~~Lf~~~a--- 69 (734)
.+|||||++.... .+. +..-..+. .+.+||+||+........ .....+++++++.++..+++...+
T Consensus 135 ~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~ 213 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG 213 (384)
T ss_dssp EEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT
T ss_pred CEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 3899999977542 222 22222223 788999999975321111 112389999999999999999874
Q ss_pred cCCCCCchhHHHHHHHHHHHhC---CCch-HHHHHHhhc------C--CcccHHHHHHHhhhhcCCCchhHHHHHHhhcc
Q 004707 70 FKENHCPEDFKRDSRRVVKYAD---GNPL-VLKVLGSSL------K--RKSHWGNVLDDLNRICESDIHDIHDILKISFN 137 (734)
Q Consensus 70 f~~~~~~~~~~~l~~~i~~~c~---GlPL-al~vlgs~L------~--~~~~W~~~l~~l~~~~~~~i~~i~~~L~~Syd 137 (734)
|.+....++ ..+.++++++ |.|- |+..+-... . +.++++.+++... ...+.-+++
T Consensus 214 ~~~~~~~~~---~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~ 280 (384)
T 2qby_B 214 LIKGTYDDE---ILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE----------QERLIEAVK 280 (384)
T ss_dssp SCTTSCCSH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred cccCCcCHH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------cchHHHHHH
Confidence 443333333 3445666666 8876 544444332 1 4556666665432 234566778
Q ss_pred cCChhhhhhhhhhccccc-CCChhHHHHHHHhhc---------cchhHHHhhcCCceee
Q 004707 138 ELMPKMKSIFLDIACFFE-GEDKDFVTRILDDYG---------SYGLEVLIDKSLITVS 186 (734)
Q Consensus 138 ~L~~~~k~~fl~ia~f~~-~~~~~~~~~~l~~~~---------~~~i~~L~~ksli~~~ 186 (734)
+|+..+|..+..++..+. +.-.+....+.++.| ...++.|.++++|...
T Consensus 281 ~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 281 ALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp SSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 999888888887876222 111122333333332 4556778888888764
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.017 Score=61.50 Aligned_cols=104 Identities=20% Similarity=0.290 Sum_probs=64.0
Q ss_pred cCCCCccceeeccCcccccC-CccccCCCCCcEEEcCCCCCCCccCcccCCCCCCccEEEeecCCCCCCCc-cCCCCCCC
Q 004707 319 IGNLESLAYILADGSAISQL-PSSVADSNVLRYLWFPRCRNLVSLPPLLLSGLSSLECLHLRDCAVTDIPQ-EIGCLSSL 396 (734)
Q Consensus 319 l~~l~~L~~L~l~~n~l~~l-p~~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L 396 (734)
+..+.+|+.+.+..+ +..+ ...+..+..|+.+.+.. .+..+....+.++.+|+.+.+.. ++..++. .+..+++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccccc-cceecccccccccccc
Confidence 344555555555433 2222 23345666777777754 25566666677777777777754 3444443 46677788
Q ss_pred cEEeeccCCCCcccc-cccCCCCCcEEeeec
Q 004707 397 EELDLSGNSFESLPV-SIKQLSQLSSLDLSD 426 (734)
Q Consensus 397 ~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~ 426 (734)
+.+.+.++.++.++. .+.++++|+.+.|..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 888887777777754 456777788777754
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.06 E-value=0.0061 Score=65.01 Aligned_cols=128 Identities=17% Similarity=0.234 Sum_probs=94.3
Q ss_pred cccCCCCCcEeeecCCCCCCCCCcccCCCCccceeeccCcccccCCc-cccCCCCCcEEEcCCCCCCCccCcccCCCCCC
Q 004707 294 SFENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILADGSAISQLPS-SVADSNVLRYLWFPRCRNLVSLPPLLLSGLSS 372 (734)
Q Consensus 294 ~i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l~~~~l~~l~~ 372 (734)
.+....+|+.+.+..+ ....-...+.++.+|+.+.+..+ ++.+.. .+..+.+|+.+.+.. .+..++...+.++.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccc
Confidence 3556677887777652 22223345778888998888765 555543 456788899999864 477788878999999
Q ss_pred ccEEEeecCCCCCCCc-cCCCCCCCcEEeeccCCCCcccc-cccCCCCCcEEeeec
Q 004707 373 LECLHLRDCAVTDIPQ-EIGCLSSLEELDLSGNSFESLPV-SIKQLSQLSSLDLSD 426 (734)
Q Consensus 373 L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~ 426 (734)
|+.+.+.++.++.+++ .|.++.+|+.+.|..+ ++.++. ++.++++|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 9999999998888754 5888999999999754 777765 567788888776643
No 169
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.05 E-value=0.0015 Score=64.34 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=70.8
Q ss_pred EEEEEEeCCCC--hHHHHhHhccCCCCCCCcEEEEEcCChhHHh-h-cCCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNK--DEQLEGLIGGLDQYGPGSRIVVTTRDKGVLE-N-FGVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~--~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~-~-~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+.+|||||++. .+.++.+...+.....+.+||+||+...-+. . ..-...+++++++.++..+++...+.+.....+
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~ 206 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 206 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 57899999965 4567777666655567889999997754221 1 122358999999999999999988765332211
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHHh
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVLGS 102 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vlgs 102 (734)
.+....++++|+|.|..+..+..
T Consensus 207 --~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 207 --PRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHH
Confidence 24567899999999998876654
No 170
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.0037 Score=66.63 Aligned_cols=143 Identities=17% Similarity=0.107 Sum_probs=86.7
Q ss_pred CEEEEEEeCCCChH----HHHhHhccCCCC-----CCCcEEEEEcCChh--------HHhhcCCCceEECCCCCHHHHHH
Q 004707 1 MKVLIVLDDVNKDE----QLEGLIGGLDQY-----GPGSRIVVTTRDKG--------VLENFGVEKIYRVNGLEFYEAFE 63 (734)
Q Consensus 1 kk~LiVLDDV~~~~----~~~~l~~~~~~~-----~~GSrIivTTR~~~--------v~~~~~~~~~y~v~~L~~~~s~~ 63 (734)
++++|||||++... +.+.+..-+.+. ..+.++|.||+... +...++. ..+.+++++.++..+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~-~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGE-VELVFPPYTAPQLRD 208 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTS-EECCBCCCCHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCC-eEEeeCCCCHHHHHH
Confidence 47899999998764 223332222222 45678888888763 2222221 478999999999999
Q ss_pred HHHHhh---cCCCCCchhHHHHHHHHHHHhC---CCc-hHHHHHHhhcC----------CcccHHHHHHHhhhhcCCCch
Q 004707 64 LFYYFA---FKENHCPEDFKRDSRRVVKYAD---GNP-LVLKVLGSSLK----------RKSHWGNVLDDLNRICESDIH 126 (734)
Q Consensus 64 Lf~~~a---f~~~~~~~~~~~l~~~i~~~c~---GlP-Lal~vlgs~L~----------~~~~W~~~l~~l~~~~~~~i~ 126 (734)
++...+ +.+....++ ..+.++++++ |.| .|+.++..... +.++++.+++...
T Consensus 209 il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------- 277 (387)
T 2v1u_A 209 ILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-------- 277 (387)
T ss_dssp HHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH--------
T ss_pred HHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh--------
Confidence 998774 433333333 3456667777 999 44444433321 3344555554331
Q ss_pred hHHHHHHhhcccCChhhhhhhhhhcccccCC
Q 004707 127 DIHDILKISFNELMPKMKSIFLDIACFFEGE 157 (734)
Q Consensus 127 ~i~~~L~~Syd~L~~~~k~~fl~ia~f~~~~ 157 (734)
.+.+.-++.+|+..+|..++.+++..+|.
T Consensus 278 --~~~~~~~~~~l~~~~~~~l~a~~~~~~~~ 306 (387)
T 2v1u_A 278 --RDRVSEVVRTLPLHAKLVLLSIMMLEDGG 306 (387)
T ss_dssp --HHHHHHHHHSSCHHHHHHHHHHHHHSSSS
T ss_pred --hchHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 23456677899999999988888665554
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.0037 Score=66.58 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=84.3
Q ss_pred EEEEEEeCCCCh------HHHHhHhccCCC-CCCCcEEEEEcCChhHHhhcC------C-CceEECCCCCHHHHHHHHHH
Q 004707 2 KVLIVLDDVNKD------EQLEGLIGGLDQ-YGPGSRIVVTTRDKGVLENFG------V-EKIYRVNGLEFYEAFELFYY 67 (734)
Q Consensus 2 k~LiVLDDV~~~------~~~~~l~~~~~~-~~~GSrIivTTR~~~v~~~~~------~-~~~y~v~~L~~~~s~~Lf~~ 67 (734)
+.+|||||++.. +.+..+...... .+.+..||+||++......+. . ...+++++++.++..+++..
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~ 208 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTK 208 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHH
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHH
Confidence 679999999764 234444333321 234567788888765433321 1 14899999999999999987
Q ss_pred hh---cCCCCCchhHHHHHHHHHHHhC---CCch-HHHHHHhhcC----------CcccHHHHHHHhhhhcCCCchhHHH
Q 004707 68 FA---FKENHCPEDFKRDSRRVVKYAD---GNPL-VLKVLGSSLK----------RKSHWGNVLDDLNRICESDIHDIHD 130 (734)
Q Consensus 68 ~a---f~~~~~~~~~~~l~~~i~~~c~---GlPL-al~vlgs~L~----------~~~~W~~~l~~l~~~~~~~i~~i~~ 130 (734)
.+ +......+ +..+.++++++ |.|. |+..+..... +.++++.+++... ..
T Consensus 209 ~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~ 275 (386)
T 2qby_A 209 RAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE----------RD 275 (386)
T ss_dssp HHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH----------HH
T ss_pred HHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------hc
Confidence 64 32223333 34455666666 9987 4443332221 2233444443321 24
Q ss_pred HHHhhcccCChhhhhhhhhhccccc
Q 004707 131 ILKISFNELMPKMKSIFLDIACFFE 155 (734)
Q Consensus 131 ~L~~Syd~L~~~~k~~fl~ia~f~~ 155 (734)
.+.-++.+|+..++.++..+|...+
T Consensus 276 ~~~~~~~~l~~~~~~il~ai~~~~~ 300 (386)
T 2qby_A 276 RVRDIILTLPFHSKLVLMAVVSISS 300 (386)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHC-
T ss_pred hHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5666778899999999988886544
No 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.06 E-value=0.0084 Score=53.37 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=43.0
Q ss_pred cEEEeecCCCC--CCCccCCCCCCCcEEeeccCCCCccccc-ccCCCCCcEEeeecCCC
Q 004707 374 ECLHLRDCAVT--DIPQEIGCLSSLEELDLSGNSFESLPVS-IKQLSQLSSLDLSDCNM 429 (734)
Q Consensus 374 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~ 429 (734)
..++.++++++ .+|..+ .++|+.|+|++|+|+.+|.. +..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 46788888888 788654 45789999999999988875 47788888888888865
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.84 E-value=0.014 Score=56.49 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=65.4
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChhHH-hh-cCCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKGVL-EN-FGVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~v~-~~-~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+.+|||||++.. +.++.+...+.....+.+||+||+...-+ .. ..--..+++++++.++..+++...+.+.....+
T Consensus 103 ~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (226)
T 2chg_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT 182 (226)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC
T ss_pred ceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 578999999775 44566655555556788999999875421 11 111238999999999999999887754222111
Q ss_pred hHHHHHHHHHHHhCCCchHHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vl 100 (734)
.+....+++.++|.|..+..+
T Consensus 183 --~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 183 --EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHH
Confidence 244567788999999865544
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.04 Score=56.92 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=66.1
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChhH-Hhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKGV-LENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~v-~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+.+|||||++.. +.++.|...+.....+.++|+||+...- .... .-...+++++++.++..+++...+......-+
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 678999999773 4566665555445577889998877432 1111 22348999999999999999887753221111
Q ss_pred hHHHHHHHHHHHhCCCch-HHHHHHh
Q 004707 78 DFKRDSRRVVKYADGNPL-VLKVLGS 102 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPL-al~vlgs 102 (734)
.+....++++++|.|. |+..+..
T Consensus 188 --~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 188 --NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2455678899999995 4555543
No 175
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.12 E-value=0.0054 Score=58.60 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=6.4
Q ss_pred CCccEEEeecCCCC
Q 004707 371 SSLECLHLRDCAVT 384 (734)
Q Consensus 371 ~~L~~L~Ls~n~l~ 384 (734)
+.|++|+|++|.|.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 34444444444444
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.06 E-value=0.14 Score=54.33 Aligned_cols=175 Identities=16% Similarity=0.121 Sum_probs=100.9
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCC----CCcEEEEEcCChhHHhhcC-------CCceEECCCCCHHHHHHHHHHh
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYG----PGSRIVVTTRDKGVLENFG-------VEKIYRVNGLEFYEAFELFYYF 68 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~----~GSrIivTTR~~~v~~~~~-------~~~~y~v~~L~~~~s~~Lf~~~ 68 (734)
+.+|||||++.. +.++.|........ .+-.||+||++..+..... ....+++++++.++..+++...
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~ 205 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDR 205 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 578999999774 44666655443322 4678888888775443321 1137999999999999999876
Q ss_pred hc---CCCCCchhHHHHHHHHHHHh---------CCCchH-HHHHHhhcC-------CcccHHHHHHHhhhhcCCCchhH
Q 004707 69 AF---KENHCPEDFKRDSRRVVKYA---------DGNPLV-LKVLGSSLK-------RKSHWGNVLDDLNRICESDIHDI 128 (734)
Q Consensus 69 af---~~~~~~~~~~~l~~~i~~~c---------~GlPLa-l~vlgs~L~-------~~~~W~~~l~~l~~~~~~~i~~i 128 (734)
+- ......+ +....+++++ .|.|-. +..+..... ..-.++.+...+.......+
T Consensus 206 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~--- 279 (389)
T 1fnn_A 206 AKAGLAEGSYSE---DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGIS--- 279 (389)
T ss_dssp HHHHBCTTSSCH---HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCC---
T ss_pred HHhhcCCCCCCH---HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhH---
Confidence 53 2222222 4556777888 788743 333322221 11223333333333222222
Q ss_pred HHHHHhhcccCChhhhhhhhhhcccc---cC--CChhHHHHH----HHhhc---------cchhHHHhhcCCceee
Q 004707 129 HDILKISFNELMPKMKSIFLDIACFF---EG--EDKDFVTRI----LDDYG---------SYGLEVLIDKSLITVS 186 (734)
Q Consensus 129 ~~~L~~Syd~L~~~~k~~fl~ia~f~---~~--~~~~~~~~~----l~~~~---------~~~i~~L~~ksli~~~ 186 (734)
.-.++.|+..+|.++..++.+. ++ .....+... .+..+ ...++.|.++++|...
T Consensus 280 ----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 280 ----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp ----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred ----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 2335678888888888788665 22 222333222 22211 3678889999999874
No 177
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.77 E-value=0.01 Score=56.73 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=32.6
Q ss_pred CCCCCccEEEeecCCCCC-----CCccCCCCCCCcEEeeccCCCC-----cccccccCCCCCcEEeeecC
Q 004707 368 SGLSSLECLHLRDCAVTD-----IPQEIGCLSSLEELDLSGNSFE-----SLPVSIKQLSQLSSLDLSDC 427 (734)
Q Consensus 368 ~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n 427 (734)
..-+.|+.|+|++|.+.+ +-+.+..-+.|+.|+|++|.|. .+-..+..-+.|+.|+|++|
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344566666666666653 2333334456666666666665 23334444455666666543
No 178
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.76 E-value=0.079 Score=46.93 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=15.3
Q ss_pred cCcEEEeecCCCcccCcc-ccCCCCCcEeeecCC
Q 004707 277 HLKHIYLQRTAITELPSS-FENLLGLESLSVRGC 309 (734)
Q Consensus 277 ~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~Ls~~ 309 (734)
+|++|+|++|.|+.+|.. |..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344455555555444433 344444444444444
No 179
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.30 E-value=0.85 Score=46.79 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=97.5
Q ss_pred EEEEEeCCCChH--HHHhHhccCCCC------------------CCCcEEEEEcCChhHHhh---cCCCceEECCCCCHH
Q 004707 3 VLIVLDDVNKDE--QLEGLIGGLDQY------------------GPGSRIVVTTRDKGVLEN---FGVEKIYRVNGLEFY 59 (734)
Q Consensus 3 ~LiVLDDV~~~~--~~~~l~~~~~~~------------------~~GSrIivTTR~~~v~~~---~~~~~~y~v~~L~~~ 59 (734)
.+|+|||++... ..+.+...+... .++.++|.||........ .....++++++++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 478999998753 333333221111 134567777765432111 122468999999999
Q ss_pred HHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhcC--C----cccHHHHHHHhhhhcCCCchhHHHHHH
Q 004707 60 EAFELFYYFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK--R----KSHWGNVLDDLNRICESDIHDIHDILK 133 (734)
Q Consensus 60 ~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L~--~----~~~W~~~l~~l~~~~~~~i~~i~~~L~ 133 (734)
|..+++...+......-+ .+....+++++.|.|-.+..+..... . ..... ...+..+...+.
T Consensus 172 e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~----------~~~~~~~~~~~~ 239 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVIT----------RERALEALAALG 239 (324)
T ss_dssp HHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCC----------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHhc
Confidence 999999887754322111 24567888999999987766544332 0 00000 000111122233
Q ss_pred hhcccCChhhhhhhhhhcccccCC--ChhHHHHHHHhhc---cchhH-HHhhcCCceeeCCeEEecH
Q 004707 134 ISFNELMPKMKSIFLDIACFFEGE--DKDFVTRILDDYG---SYGLE-VLIDKSLITVSHNCLRMHD 194 (734)
Q Consensus 134 ~Syd~L~~~~k~~fl~ia~f~~~~--~~~~~~~~l~~~~---~~~i~-~L~~ksli~~~~~~~~mHd 194 (734)
.++..++..++..+...+..+.|. ....+.+.+.-.. ...++ .+++.++|........+-+
T Consensus 240 ~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~ 306 (324)
T 1hqc_A 240 LDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTE 306 (324)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECH
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecH
Confidence 456678888888888777665543 2344433321100 12223 3778888877644444444
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.15 Score=52.55 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=65.2
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChhH-Hhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKGV-LENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~v-~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+.+||+||++.. +.++.|.........+.++|+||+...- .... .-...+++++++.++..+++...+......-+
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 190 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT 190 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEEC
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCC
Confidence 568999999764 4566666655555678899999876432 1111 11237899999999999999887754332111
Q ss_pred hHHHHHHHHHHHhCCCchHHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vl 100 (734)
.+....+++.++|.|-.+..+
T Consensus 191 --~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 191 --EEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHCCCCHHHHHHH
Confidence 244567888899999865444
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.98 E-value=0.98 Score=47.31 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=63.3
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChh-HHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKG-VLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+.+||+||++.. +.++.|...+.....+.++|++|.+.. +.... .-...+++++++.++..+++...+-+.....+
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~ 199 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE 199 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 468899999753 456666555544456777888876543 21111 12368999999999999998876533221111
Q ss_pred hHHHHHHHHHHHhCCCchHHHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVLG 101 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vlg 101 (734)
.+....++++++|.|..+..+.
T Consensus 200 --~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 200 --PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp --HHHHHHHHHHSSSCHHHHHHHH
T ss_pred --HHHHHHHHHHCCCCHHHHHHHH
Confidence 2445678889999998765543
No 182
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.21 E-value=2.5 Score=42.92 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=64.6
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChh-HHhh-cCCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKG-VLEN-FGVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~-~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+.+||+||++.. +..+.|.........+.++|+||.... +... ..-...+++++++.++..+++...+-+....-+
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~ 182 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT 182 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 568999999764 456777777766667888898887654 2111 112248999999999999998877654332111
Q ss_pred hHHHHHHHHHHHhCCCchHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKV 99 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~v 99 (734)
.+....+++.++|.+-.+..
T Consensus 183 --~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 183 --EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp --HHHHHHHHHTTTTCHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHH
Confidence 23455677888998875443
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.93 E-value=1.5 Score=43.71 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=63.3
Q ss_pred EEEEEEeCCCCh------------HHHHhHhccCC---CCCCCcEEEEEcCChhHHhhc----CCCceEECCCCCH-HHH
Q 004707 2 KVLIVLDDVNKD------------EQLEGLIGGLD---QYGPGSRIVVTTRDKGVLENF----GVEKIYRVNGLEF-YEA 61 (734)
Q Consensus 2 k~LiVLDDV~~~------------~~~~~l~~~~~---~~~~GSrIivTTR~~~v~~~~----~~~~~y~v~~L~~-~~s 61 (734)
..+|+|||++.. ..++.|..... ..+...+||.||.....+... .....+++++++. ++-
T Consensus 125 ~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i 204 (272)
T 1d2n_A 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQL 204 (272)
T ss_dssp EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHH
T ss_pred CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHH
Confidence 468999998653 22333333222 233455678888887665542 1246789999988 555
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHhCC------CchHHHHHHhhcC--CcccHHHHHHHhhhhc
Q 004707 62 FELFYYFAFKENHCPEDFKRDSRRVVKYADG------NPLVLKVLGSSLK--RKSHWGNVLDDLNRIC 121 (734)
Q Consensus 62 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~G------lPLal~vlgs~L~--~~~~W~~~l~~l~~~~ 121 (734)
.+++.... .-. .+....+++.+.| ++-++.++-..-. ....|+.++..+....
T Consensus 205 ~~i~~~~~---~~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 205 LEALELLG---NFK----DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHHT---CSC----HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHHHHhcC---CCC----HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcC
Confidence 55554421 112 2334566777777 3444444443333 4456677776665543
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.89 E-value=0.58 Score=45.45 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=55.2
Q ss_pred EEEEEeCCCChH--H--HHhHhccCCC-CCCCc-EEEEEcCC---------hhHHhhcCCCceEECCCCCHHHHHHHHHH
Q 004707 3 VLIVLDDVNKDE--Q--LEGLIGGLDQ-YGPGS-RIVVTTRD---------KGVLENFGVEKIYRVNGLEFYEAFELFYY 67 (734)
Q Consensus 3 ~LiVLDDV~~~~--~--~~~l~~~~~~-~~~GS-rIivTTR~---------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~ 67 (734)
.+|||||++... + .+.+...+.. ...|. +||+||+. +.+...+....++++++++.++..+++..
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~ 185 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQR 185 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHH
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHH
Confidence 478999996542 1 2223222111 11232 58887763 22333332336899999999999999988
Q ss_pred hhcCCC-CCchhHHHHHHHHHHHhCCCchHHHH
Q 004707 68 FAFKEN-HCPEDFKRDSRRVVKYADGNPLVLKV 99 (734)
Q Consensus 68 ~af~~~-~~~~~~~~l~~~i~~~c~GlPLal~v 99 (734)
.+-... ... .+....++++++|.+-.+..
T Consensus 186 ~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 186 RAAMRGLQLP---EDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp HHHHTTCCCC---HHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHcCCCCC---HHHHHHHHHHccCCHHHHHH
Confidence 764322 122 24455777888888765543
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=81.55 E-value=0.89 Score=49.20 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=56.5
Q ss_pred EEEEEeCCCChH----HHHhHhccCCC-CCCCcEEEEEcCC---------hhHHhhcCCCceEECCCCCHHHHHHHHHHh
Q 004707 3 VLIVLDDVNKDE----QLEGLIGGLDQ-YGPGSRIVVTTRD---------KGVLENFGVEKIYRVNGLEFYEAFELFYYF 68 (734)
Q Consensus 3 ~LiVLDDV~~~~----~~~~l~~~~~~-~~~GSrIivTTR~---------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~ 68 (734)
-+|+|||++... .-+.+...+.. ...|.+||+||.. ..+...+....++.+++++.++-.+++..+
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 478999996432 22333222211 2457889999876 334444444468899999999999999887
Q ss_pred hcCCC-CCchhHHHHHHHHHHHhCCCchH
Q 004707 69 AFKEN-HCPEDFKRDSRRVVKYADGNPLV 96 (734)
Q Consensus 69 af~~~-~~~~~~~~l~~~i~~~c~GlPLa 96 (734)
+-... ..++ +....+++++.|.+-.
T Consensus 276 ~~~~~~~i~~---e~l~~la~~~~gn~R~ 301 (440)
T 2z4s_A 276 LEIEHGELPE---EVLNFVAENVDDNLRR 301 (440)
T ss_dssp HHHHTCCCCT---THHHHHHHHCCSCHHH
T ss_pred HHHcCCCCCH---HHHHHHHHhcCCCHHH
Confidence 74321 2222 2344667788888753
No 186
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.73 E-value=1.9 Score=43.30 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=52.5
Q ss_pred EEEEEeCCCCh----------------HHHHhHhccCC--CCCCCcEEEEEcCChhH-----HhhcCCCceEECCCCCHH
Q 004707 3 VLIVLDDVNKD----------------EQLEGLIGGLD--QYGPGSRIVVTTRDKGV-----LENFGVEKIYRVNGLEFY 59 (734)
Q Consensus 3 ~LiVLDDV~~~----------------~~~~~l~~~~~--~~~~GSrIivTTR~~~v-----~~~~~~~~~y~v~~L~~~ 59 (734)
.+|+|||++.. ..+..+..... ....+.+||.||...+. ......+.++.++.++.+
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~ 191 (285)
T 3h4m_A 112 SIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191 (285)
T ss_dssp EEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHH
T ss_pred eEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHH
Confidence 58999999764 12223332222 12346788888885433 322234568999999999
Q ss_pred HHHHHHHHhhcCCCC-CchhHHHHHHHHHHHhCCC
Q 004707 60 EAFELFYYFAFKENH-CPEDFKRDSRRVVKYADGN 93 (734)
Q Consensus 60 ~s~~Lf~~~af~~~~-~~~~~~~l~~~i~~~c~Gl 93 (734)
+-.+++..++.+... ...++. .++..+.|.
T Consensus 192 ~r~~il~~~~~~~~~~~~~~~~----~l~~~~~g~ 222 (285)
T 3h4m_A 192 GRLEILKIHTRKMNLAEDVNLE----EIAKMTEGC 222 (285)
T ss_dssp HHHHHHHHHHTTSCBCTTCCHH----HHHHHCTTC
T ss_pred HHHHHHHHHHhcCCCCCcCCHH----HHHHHcCCC
Confidence 999999988754332 222344 445556663
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.93 E-value=6.5 Score=43.31 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=55.8
Q ss_pred EEEEEEeCCCChH-----HHHhHhccCCCCCCCcEEEEEcCChh---HHhhcCCCceEECCCCCHHHHHHHHHHhhcCCC
Q 004707 2 KVLIVLDDVNKDE-----QLEGLIGGLDQYGPGSRIVVTTRDKG---VLENFGVEKIYRVNGLEFYEAFELFYYFAFKEN 73 (734)
Q Consensus 2 k~LiVLDDV~~~~-----~~~~l~~~~~~~~~GSrIivTTR~~~---v~~~~~~~~~y~v~~L~~~~s~~Lf~~~af~~~ 73 (734)
+.+||||||+... .++.|..... ..+.+||++|.+.. +.........+++++++.++..+.+...+.+..
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 4689999996541 1233322221 12445777766533 222223345799999999999999988775422
Q ss_pred -CCchhHHHHHHHHHHHhCCC-chHHHHHH
Q 004707 74 -HCPEDFKRDSRRVVKYADGN-PLVLKVLG 101 (734)
Q Consensus 74 -~~~~~~~~l~~~i~~~c~Gl-PLal~vlg 101 (734)
...+ +....++++++|. +-|+..+.
T Consensus 227 ~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 227 FKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 2222 2345678888884 45555553
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=75.21 E-value=5.4 Score=41.14 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=61.5
Q ss_pred EEEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChh-HHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCch
Q 004707 2 KVLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKG-VLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPE 77 (734)
Q Consensus 2 k~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~ 77 (734)
+-++|+|+++.. +..+.|...+..-.++..+|++|.+.+ +.... .-...+++++++.++..+.+...+ ...
T Consensus 109 ~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~- 183 (334)
T 1a5t_A 109 AKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TMS- 183 (334)
T ss_dssp CEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CCC-
T ss_pred cEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CCC-
Confidence 457889999875 345666665555556778787776643 33322 223589999999999999887765 111
Q ss_pred hHHHHHHHHHHHhCCCchHHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vl 100 (734)
.+....+++.++|.|..+..+
T Consensus 184 --~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 184 --QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp --HHHHHHHHHHTTTCHHHHHHT
T ss_pred --HHHHHHHHHHcCCCHHHHHHH
Confidence 234467888999999765443
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.98 E-value=12 Score=37.96 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=53.1
Q ss_pred EEEEEEeCCCChH---HHHhHhccCCCCCCCcEEEEEcCChh-----HHhhcCCCceEECCCCCHHHHHHH-------HH
Q 004707 2 KVLIVLDDVNKDE---QLEGLIGGLDQYGPGSRIVVTTRDKG-----VLENFGVEKIYRVNGLEFYEAFEL-------FY 66 (734)
Q Consensus 2 k~LiVLDDV~~~~---~~~~l~~~~~~~~~GSrIivTTR~~~-----v~~~~~~~~~y~v~~L~~~~s~~L-------f~ 66 (734)
+-+|+|||++... +.+.|.........+.+||+||.... +...+ .++++++++.++-.++ +.
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 5689999999864 45555444333345678888887643 22222 4799999998874333 22
Q ss_pred HhhcCCC-CCchhHHHHHHHHHHHhCCCch
Q 004707 67 YFAFKEN-HCPEDFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 67 ~~af~~~-~~~~~~~~l~~~i~~~c~GlPL 95 (734)
..+-... ..++ .+....++++++|.+-
T Consensus 183 ~~~~~~~~~~~~--~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 183 EICKHEGIAIAD--MKVVAALVKKNFPDFR 210 (324)
T ss_dssp HHHHHHTCCBSC--HHHHHHHHHHTCSCTT
T ss_pred HHHHHcCCCCCc--HHHHHHHHHhCCCCHH
Confidence 2222211 1111 2555678888888765
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.61 E-value=4.9 Score=41.54 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=57.3
Q ss_pred EEEEeCCCChH--HHHhHhccCCCCCCCcEEEEEcCChh-HHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchhH
Q 004707 4 LIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVVTTRDKG-VLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDF 79 (734)
Q Consensus 4 LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~ 79 (734)
++|||+++... ..+.+...+....++.+||+||.+.+ +.... .-...+++++++.++..+.+...+-+....-+ -
T Consensus 137 vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 215 (354)
T 1sxj_E 137 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-T 215 (354)
T ss_dssp EEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-C
T ss_pred EEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-c
Confidence 78999998742 23344333333345778888887632 22211 11268999999999999999887743221100 0
Q ss_pred HHHHHHHHHHhCCCchHH
Q 004707 80 KRDSRRVVKYADGNPLVL 97 (734)
Q Consensus 80 ~~l~~~i~~~c~GlPLal 97 (734)
.+....+++.++|.+-.+
T Consensus 216 ~~~l~~i~~~~~G~~r~a 233 (354)
T 1sxj_E 216 KDILKRIAQASNGNLRVS 233 (354)
T ss_dssp SHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 234567888899988543
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.39 E-value=15 Score=35.77 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=53.0
Q ss_pred EEEEEeCCCCh-----------------HHHHhHhccCCCC--CCCcEEEEEcCChhHHhh-----cCCCceEECCCCCH
Q 004707 3 VLIVLDDVNKD-----------------EQLEGLIGGLDQY--GPGSRIVVTTRDKGVLEN-----FGVEKIYRVNGLEF 58 (734)
Q Consensus 3 ~LiVLDDV~~~-----------------~~~~~l~~~~~~~--~~GSrIivTTR~~~v~~~-----~~~~~~y~v~~L~~ 58 (734)
.+|+|||++.. ..+..+....... ..+-+||.||.....+.. -..+..+.++.++.
T Consensus 100 ~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~ 179 (262)
T 2qz4_A 100 CIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179 (262)
T ss_dssp EEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCH
T ss_pred eEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCH
Confidence 58999999865 1123333322222 235567777766443221 12456888999999
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCch
Q 004707 59 YEAFELFYYFAFKENHCPEDFKRDSRRVVKYADGNPL 95 (734)
Q Consensus 59 ~~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPL 95 (734)
++-.+++..++-+..... +-......+++.+.|.+-
T Consensus 180 ~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 180 QERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCH
T ss_pred HHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCH
Confidence 999999988775432221 112234677888888764
No 192
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.06 E-value=52 Score=33.29 Aligned_cols=159 Identities=11% Similarity=0.076 Sum_probs=80.8
Q ss_pred cEEEEEcCChh-----HHhhcCCCceEECCCCCHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCchHHHHHHhhc
Q 004707 30 SRIVVTTRDKG-----VLENFGVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSL 104 (734)
Q Consensus 30 SrIivTTR~~~-----v~~~~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPLal~vlgs~L 104 (734)
-++|.+|.... +.. ..+.++++++++.++..+++...+-..... --.+....+++.+.|.|-.+..+....
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~ 230 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRV 230 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 56777776533 222 235689999999999999998776432211 113445667778899985443332211
Q ss_pred CCcccHHHHHHHhhhh---cCCCchhHHHHHHhhcccCChhhhhhhhhhcccccCCC--hhHHHHHHHhhc---cchhH-
Q 004707 105 KRKSHWGNVLDDLNRI---CESDIHDIHDILKISFNELMPKMKSIFLDIACFFEGED--KDFVTRILDDYG---SYGLE- 175 (734)
Q Consensus 105 ~~~~~W~~~l~~l~~~---~~~~i~~i~~~L~~Syd~L~~~~k~~fl~ia~f~~~~~--~~~~~~~l~~~~---~~~i~- 175 (734)
. .| ...... ....+......+..+..+++..++..+..++-. .+.. ...+.+.+.-.. ...++
T Consensus 231 ~---~~----a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~ 302 (338)
T 3pfi_A 231 R---DF----ADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEP 302 (338)
T ss_dssp H---HH----HHHTTCSEECHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHH
T ss_pred H---HH----HHhhcCCccCHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 0 00 000000 000011112223444556666666666666655 3322 333333332110 23444
Q ss_pred HHhhcCCceee-CCeEEecHHHHHHH
Q 004707 176 VLIDKSLITVS-HNCLRMHDLLQEMG 200 (734)
Q Consensus 176 ~L~~ksli~~~-~~~~~mHdll~~~~ 200 (734)
.|++.++|... .|++.-..-+..++
T Consensus 303 ~l~~~gli~~~~~g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 303 YLLANGYIERTAKGRIASAKSYSALK 328 (338)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHHHH
T ss_pred HHHHcCceecCCCcccccHHHHHHhc
Confidence 78889998776 45554444444444
No 193
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.89 E-value=19 Score=36.91 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=59.4
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChh-HHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCC-Cch
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKG-VLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENH-CPE 77 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~-~~~ 77 (734)
-+|++|+++.. +..+.|...........++|++|.... +.... .-...+++++++.++..+.+...+-.... .+
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~- 213 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCD- 213 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC-
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC-
Confidence 48899999764 334445444433445677888775432 21111 11247899999999999998877643321 22
Q ss_pred hHHHHHHHHHHHhCCCchHHHHH
Q 004707 78 DFKRDSRRVVKYADGNPLVLKVL 100 (734)
Q Consensus 78 ~~~~l~~~i~~~c~GlPLal~vl 100 (734)
.+..+.++++++|.|-.+..+
T Consensus 214 --~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 214 --DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp --HHHHHHHHHHTSSCHHHHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHH
Confidence 245678889999998764443
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=61.57 E-value=12 Score=38.08 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=52.1
Q ss_pred EEEEEeCCCChH----HHHhHhccCC-CCCCCcEEEEEcCC---------hhHHhhcCCCceEECCCCCHHHHHHHHHHh
Q 004707 3 VLIVLDDVNKDE----QLEGLIGGLD-QYGPGSRIVVTTRD---------KGVLENFGVEKIYRVNGLEFYEAFELFYYF 68 (734)
Q Consensus 3 ~LiVLDDV~~~~----~~~~l~~~~~-~~~~GSrIivTTR~---------~~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~ 68 (734)
-+|+||||+... ..+.+...+. ....|.+||+||.. +.+...+....++++++ +.++-.+++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 478999996643 1222322221 12356688888853 33344444446799999 999999999888
Q ss_pred hcCCC-CCchhHHHHHHHHHHHhCCCc
Q 004707 69 AFKEN-HCPEDFKRDSRRVVKYADGNP 94 (734)
Q Consensus 69 af~~~-~~~~~~~~l~~~i~~~c~GlP 94 (734)
+.... ..+ .+....+++++ |..
T Consensus 179 ~~~~~~~l~---~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 179 LKEFNLELR---KEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHTTCCCC---HHHHHHHHHHC-SSH
T ss_pred HHhcCCCCC---HHHHHHHHHhC-CCH
Confidence 75322 222 23345666777 654
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=59.83 E-value=36 Score=35.12 Aligned_cols=95 Identities=15% Similarity=0.124 Sum_probs=53.6
Q ss_pred EEEEEEeCCCChH-------------HHHhHhc---cCCCCCCCcEEEEEcCCh-----hHHhhcCCCceEECCCCCHHH
Q 004707 2 KVLIVLDDVNKDE-------------QLEGLIG---GLDQYGPGSRIVVTTRDK-----GVLENFGVEKIYRVNGLEFYE 60 (734)
Q Consensus 2 k~LiVLDDV~~~~-------------~~~~l~~---~~~~~~~GSrIivTTR~~-----~v~~~~~~~~~y~v~~L~~~~ 60 (734)
..+|+||+++... ....+.. .......+-.||.||... .+.. ..+..+.++.++.++
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 3689999998642 1222222 122223456666677643 3344 456788999999999
Q ss_pred HHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCC-chHHHHH
Q 004707 61 AFELFYYFAFKENHCPEDFKRDSRRVVKYADGN-PLVLKVL 100 (734)
Q Consensus 61 s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~Gl-PLal~vl 100 (734)
-.+++..++-+...... ......+++++.|. +-.|..+
T Consensus 222 r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp HHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 99999887743321111 12234566777774 4344443
No 196
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=56.88 E-value=18 Score=36.37 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=45.9
Q ss_pred EEEEeCCC-----------ChHHHHhHhccCCCCCCCcEEEEEcCChh----------HHhhcCCCceEECCCCCHHHHH
Q 004707 4 LIVLDDVN-----------KDEQLEGLIGGLDQYGPGSRIVVTTRDKG----------VLENFGVEKIYRVNGLEFYEAF 62 (734)
Q Consensus 4 LiVLDDV~-----------~~~~~~~l~~~~~~~~~GSrIivTTR~~~----------v~~~~~~~~~y~v~~L~~~~s~ 62 (734)
+|+|||++ ..+..+.|...+.....+.+||.||.... +... .+.++++++++.++-.
T Consensus 133 vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~ 210 (309)
T 3syl_A 133 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELF 210 (309)
T ss_dssp EEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHH
T ss_pred EEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHH
Confidence 68999998 34445555555444556778888886432 3333 2468999999999999
Q ss_pred HHHHHhhcC
Q 004707 63 ELFYYFAFK 71 (734)
Q Consensus 63 ~Lf~~~af~ 71 (734)
+++..++-+
T Consensus 211 ~il~~~l~~ 219 (309)
T 3syl_A 211 EIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999877643
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=56.76 E-value=32 Score=35.53 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=42.2
Q ss_pred CCcEEEEEcCChh-----HHhhcCCCceEECCCCCHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCC-CchHHHHHH
Q 004707 28 PGSRIVVTTRDKG-----VLENFGVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDFKRDSRRVVKYADG-NPLVLKVLG 101 (734)
Q Consensus 28 ~GSrIivTTR~~~-----v~~~~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~G-lPLal~vlg 101 (734)
.+-+||.||.... +.. .....+.++.++.++-.+++...+-.....-. .+....+++.+.| .+-+++.+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456666776532 222 33467889999999999998877643221111 2344567777888 455555553
No 198
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=56.60 E-value=38 Score=34.26 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=54.5
Q ss_pred EEEEEeCCCChH-------------HHHhHh---ccCCCCCCCcEEEEEcCChhH-----HhhcCCCceEECCCCCHHHH
Q 004707 3 VLIVLDDVNKDE-------------QLEGLI---GGLDQYGPGSRIVVTTRDKGV-----LENFGVEKIYRVNGLEFYEA 61 (734)
Q Consensus 3 ~LiVLDDV~~~~-------------~~~~l~---~~~~~~~~GSrIivTTR~~~v-----~~~~~~~~~y~v~~L~~~~s 61 (734)
.+|+|||++... ....+. ........+.+||.||..... .. ..+..+.++.++.++-
T Consensus 112 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 112 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 189 (322)
T ss_dssp EEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHH
T ss_pred eEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHH
Confidence 588999997541 122222 222223456667767776432 33 3456789999999999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHhCCC-chHHHHH
Q 004707 62 FELFYYFAFKENHCPEDFKRDSRRVVKYADGN-PLVLKVL 100 (734)
Q Consensus 62 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~Gl-PLal~vl 100 (734)
.+++..++-+...... ......+++++.|. +-.|..+
T Consensus 190 ~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 190 TTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp HHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 9999988754322111 12334666777774 4344433
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=55.84 E-value=68 Score=32.48 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=53.4
Q ss_pred EEEEEeCCCChH-------------HHHhHhcc---CCCCCCCcEEEEEcCCh-----hHHhhcCCCceEECCCCCHHHH
Q 004707 3 VLIVLDDVNKDE-------------QLEGLIGG---LDQYGPGSRIVVTTRDK-----GVLENFGVEKIYRVNGLEFYEA 61 (734)
Q Consensus 3 ~LiVLDDV~~~~-------------~~~~l~~~---~~~~~~GSrIivTTR~~-----~v~~~~~~~~~y~v~~L~~~~s 61 (734)
.+|+||+++... ....+... ......+-.||.||... .+.+ ..+..+.++.++.++-
T Consensus 107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 184 (322)
T 1xwi_A 107 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHAR 184 (322)
T ss_dssp EEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHH
T ss_pred cEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHH
Confidence 578999998651 11222222 21123455566667543 3333 4457889999999999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCc-hHHHHH
Q 004707 62 FELFYYFAFKENHCPEDFKRDSRRVVKYADGNP-LVLKVL 100 (734)
Q Consensus 62 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlP-Lal~vl 100 (734)
.+++..+.-+...... ......+++.+.|.. -.|..+
T Consensus 185 ~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 185 AAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp HHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 9999877633221111 123456677788863 334444
No 200
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=43.62 E-value=91 Score=32.39 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=41.7
Q ss_pred CcEEEEEcCChh-----HHhhcCCCceEECCCCCHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCch-HHHHH
Q 004707 29 GSRIVVTTRDKG-----VLENFGVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDFKRDSRRVVKYADGNPL-VLKVL 100 (734)
Q Consensus 29 GSrIivTTR~~~-----v~~~~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPL-al~vl 100 (734)
.-+||.||.... +.. .....+.++.++.++-.+++...+-.....-. .+....+++.+.|..- ++..+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 445666676532 222 23457889999999999999877744322211 2344577788888554 55554
No 201
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=43.41 E-value=58 Score=33.15 Aligned_cols=94 Identities=12% Similarity=-0.034 Sum_probs=61.2
Q ss_pred EEEEEeCCCC---hHHHHhHhccCCCCCCCcEEEEEcCC-------hhHHhhc-CCCceEECCCCCHHHHHHHHHHhhcC
Q 004707 3 VLIVLDDVNK---DEQLEGLIGGLDQYGPGSRIVVTTRD-------KGVLENF-GVEKIYRVNGLEFYEAFELFYYFAFK 71 (734)
Q Consensus 3 ~LiVLDDV~~---~~~~~~l~~~~~~~~~GSrIivTTR~-------~~v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~ 71 (734)
=+||+|+++. .+.++.|........++..+|++|.+ +.+.+.. ....+++..+++.++..+.....+-+
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 3678899865 35677777666555578888877643 3455543 23468899999998888777665532
Q ss_pred CC-CCchhHHHHHHHHHHHhCCCchHHHH
Q 004707 72 EN-HCPEDFKRDSRRVVKYADGNPLVLKV 99 (734)
Q Consensus 72 ~~-~~~~~~~~l~~~i~~~c~GlPLal~v 99 (734)
.. ... .+....+++.++|...++..
T Consensus 158 ~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 158 LNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred cCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 22 111 24456777888888765544
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=42.66 E-value=96 Score=32.99 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=55.3
Q ss_pred EEEEEeCCCCh-------------HHHHhHhccCCCC---CCCcEEEEEcCChh-----HHhhcCCCceEECCCCCHHHH
Q 004707 3 VLIVLDDVNKD-------------EQLEGLIGGLDQY---GPGSRIVVTTRDKG-----VLENFGVEKIYRVNGLEFYEA 61 (734)
Q Consensus 3 ~LiVLDDV~~~-------------~~~~~l~~~~~~~---~~GSrIivTTR~~~-----v~~~~~~~~~y~v~~L~~~~s 61 (734)
.+|+||+++.. .....+...+... ..+-.||.||.... +.+ ..+..+.++.++.++-
T Consensus 229 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 306 (444)
T 2zan_A 229 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHAR 306 (444)
T ss_dssp EEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHH
T ss_pred eEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHH
Confidence 57899999865 1233344433332 34566777776543 233 3456888999999999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHhCCC-chHHHHH
Q 004707 62 FELFYYFAFKENHCPEDFKRDSRRVVKYADGN-PLVLKVL 100 (734)
Q Consensus 62 ~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~Gl-PLal~vl 100 (734)
.++|..++-+...... ......+++.+.|. +-.|..+
T Consensus 307 ~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 307 AAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp HHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 9999887643221111 12334566778884 4344443
No 203
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=41.54 E-value=53 Score=33.66 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=53.9
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCC-----------------hhHHhhcCCCceEECCCCCHHHHHH
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRD-----------------KGVLENFGVEKIYRVNGLEFYEAFE 63 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~-----------------~~v~~~~~~~~~y~v~~L~~~~s~~ 63 (734)
.+|+||+++.. +..+.|.......... .||++|.. ..+...+ ..+++++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 38999999775 3455555555433333 44444431 3344443 347999999999999
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHhC-CCchHH
Q 004707 64 LFYYFAFKENHCPEDFKRDSRRVVKYAD-GNPLVL 97 (734)
Q Consensus 64 Lf~~~af~~~~~~~~~~~l~~~i~~~c~-GlPLal 97 (734)
++...+-.....- -.+....+++++. |.|-.+
T Consensus 267 il~~~~~~~~~~~--~~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 267 ILRIRCEEEDVEM--SEDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp HHHHHHHHTTCCB--CHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHhcCCCHHHH
Confidence 9987765422211 1234567778887 776543
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=36.32 E-value=1.4e+02 Score=29.24 Aligned_cols=69 Identities=19% Similarity=0.097 Sum_probs=42.8
Q ss_pred CCcEEEEEcCCh-----hHHhhcCCCceEECCCCCHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHhCCCch-HHHHH
Q 004707 28 PGSRIVVTTRDK-----GVLENFGVEKIYRVNGLEFYEAFELFYYFAFKENHCPEDFKRDSRRVVKYADGNPL-VLKVL 100 (734)
Q Consensus 28 ~GSrIivTTR~~-----~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~~~~l~~~i~~~c~GlPL-al~vl 100 (734)
.+-.||.||... .+... .+..+.++.++.++-.+++...+-+....-. .+....+++++.|.+- ++..+
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 345677777753 33433 3467888999999988888876643222111 2344567788888875 55444
No 205
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=32.68 E-value=18 Score=36.59 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=46.9
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCCh-hHHhhcCCCceEECCCCCHHHHHHHHHHhh
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDK-GVLENFGVEKIYRVNGLEFYEAFELFYYFA 69 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~-~v~~~~~~~~~y~v~~L~~~~s~~Lf~~~a 69 (734)
=++|+|+++.. ++.+.|........+.+++|++|.+. .+....... +++++++++++..+...+.+
T Consensus 84 kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 84 KYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred eEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 46789999764 45666666555445678888777553 455444444 99999999999999887766
No 206
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.32 E-value=1.1e+02 Score=32.70 Aligned_cols=94 Identities=11% Similarity=0.199 Sum_probs=51.3
Q ss_pred EEEEEEeCCCChH--HHHhHhccCCCCCCCcEEEE-EcCChh--HHhh-cCCCceEECCCCCHHHHHHHHHHhhcCCC--
Q 004707 2 KVLIVLDDVNKDE--QLEGLIGGLDQYGPGSRIVV-TTRDKG--VLEN-FGVEKIYRVNGLEFYEAFELFYYFAFKEN-- 73 (734)
Q Consensus 2 k~LiVLDDV~~~~--~~~~l~~~~~~~~~GSrIiv-TTR~~~--v~~~-~~~~~~y~v~~L~~~~s~~Lf~~~af~~~-- 73 (734)
+.+|+||+|+... +.+.|...+.. +. -++|. ||.+.. +... ..-..++.+++++.++..+++.+.+-...
T Consensus 107 ~~iLfIDEI~~l~~~~q~~LL~~le~-~~-v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~ 184 (447)
T 3pvs_A 107 RTILFVDEVHRFNKSQQDAFLPHIED-GT-ITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRG 184 (447)
T ss_dssp CEEEEEETTTCC------CCHHHHHT-TS-CEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTS
T ss_pred CcEEEEeChhhhCHHHHHHHHHHHhc-Cc-eEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhh
Confidence 4689999997753 44444444332 22 23333 555532 1111 11224889999999999999887764311
Q ss_pred ---CCchhHHHHHHHHHHHhCCCchHH
Q 004707 74 ---HCPEDFKRDSRRVVKYADGNPLVL 97 (734)
Q Consensus 74 ---~~~~~~~~l~~~i~~~c~GlPLal 97 (734)
....--.+....++++++|.+-.+
T Consensus 185 ~~~~~~~i~~~al~~L~~~~~Gd~R~l 211 (447)
T 3pvs_A 185 YGGQDIVLPDETRRAIAELVNGDARRA 211 (447)
T ss_dssp STTSSEECCHHHHHHHHHHHCSCHHHH
T ss_pred hccccCcCCHHHHHHHHHHCCCCHHHH
Confidence 111112345566777888887543
No 207
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=28.25 E-value=48 Score=33.70 Aligned_cols=68 Identities=10% Similarity=-0.053 Sum_probs=39.1
Q ss_pred CEEEEEEeCCCChHHHHhHhccCCCC-CCCcEE--EEEcCChhH---------HhhcCCCceEECCCCCHHHHHHHHHHh
Q 004707 1 MKVLIVLDDVNKDEQLEGLIGGLDQY-GPGSRI--VVTTRDKGV---------LENFGVEKIYRVNGLEFYEAFELFYYF 68 (734)
Q Consensus 1 kk~LiVLDDV~~~~~~~~l~~~~~~~-~~GSrI--ivTTR~~~v---------~~~~~~~~~y~v~~L~~~~s~~Lf~~~ 68 (734)
++++||||+++...+-+.|..-+.|. ..+|++ |.++.+.+. ...++ ...+..++.+.+|-.+++.+.
T Consensus 132 ~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~R 210 (318)
T 3te6_A 132 RKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITR 210 (318)
T ss_dssp CEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHH
T ss_pred CceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHH
Confidence 36899999998864322222222221 234433 333544322 12232 146889999999999988766
Q ss_pred h
Q 004707 69 A 69 (734)
Q Consensus 69 a 69 (734)
+
T Consensus 211 l 211 (318)
T 3te6_A 211 L 211 (318)
T ss_dssp H
T ss_pred H
Confidence 5
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.54 E-value=1.8e+02 Score=29.19 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=54.7
Q ss_pred EEEEEeCCCCh--HHHHhHhccCCCCCCCcEEEEEcCChh-HHhhc-CCCceEECCCCCHHHHHHHHHHhhcCCCCCchh
Q 004707 3 VLIVLDDVNKD--EQLEGLIGGLDQYGPGSRIVVTTRDKG-VLENF-GVEKIYRVNGLEFYEAFELFYYFAFKENHCPED 78 (734)
Q Consensus 3 ~LiVLDDV~~~--~~~~~l~~~~~~~~~GSrIivTTR~~~-v~~~~-~~~~~y~v~~L~~~~s~~Lf~~~af~~~~~~~~ 78 (734)
-++|+|+++.. ++.+.|...+.......++|++|.... +.... .-...+++++++.++..+.....+-.....-+
T Consensus 112 ~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~- 190 (340)
T 1sxj_C 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS- 190 (340)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC-
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 46889998653 344555444333345677888776543 11111 11247899999999988887765522221111
Q ss_pred HHHHHHHHHHHhCCCchH
Q 004707 79 FKRDSRRVVKYADGNPLV 96 (734)
Q Consensus 79 ~~~l~~~i~~~c~GlPLa 96 (734)
.+..+.+++.++|.+--
T Consensus 191 -~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 191 -PNAEKALIELSNGDMRR 207 (340)
T ss_dssp -HHHHHHHHHHHTTCHHH
T ss_pred -HHHHHHHHHHcCCCHHH
Confidence 23456788888998763
No 209
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.35 E-value=62 Score=25.73 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=22.6
Q ss_pred eCCCChHHHHhHhccCCCCCCCcEEEEEcCChhHHhhc
Q 004707 8 DDVNKDEQLEGLIGGLDQYGPGSRIVVTTRDKGVLENF 45 (734)
Q Consensus 8 DDV~~~~~~~~l~~~~~~~~~GSrIivTTR~~~v~~~~ 45 (734)
-||.+.+++..-...+..-.+--+|+|++.|+++++.|
T Consensus 30 rdvndsdelkkemkklaeeknfekiliisndkqllkem 67 (134)
T 2lci_A 30 RDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEM 67 (134)
T ss_dssp EEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHH
T ss_pred eecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHH
Confidence 35666555433222121123445799999999999875
No 210
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.87 E-value=97 Score=25.27 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=14.9
Q ss_pred ccCCCCCcEeeecCCCCCCCCCcccCCCCccceeecc
Q 004707 295 FENLLGLESLSVRGCSKLDKLPDNIGNLESLAYILAD 331 (734)
Q Consensus 295 i~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l~ 331 (734)
|.++.+|+.+.|-. +....-...|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 44455555555443 1111112234444444444443
No 211
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=21.54 E-value=17 Score=32.88 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=33.8
Q ss_pred EEEEEEeCCCChH---------H-HHhHhccCCCCCCCcEEEEEcCChhHHhhc-------CCCceEECCCCCHHHHHHH
Q 004707 2 KVLIVLDDVNKDE---------Q-LEGLIGGLDQYGPGSRIVVTTRDKGVLENF-------GVEKIYRVNGLEFYEAFEL 64 (734)
Q Consensus 2 k~LiVLDDV~~~~---------~-~~~l~~~~~~~~~GSrIivTTR~~~v~~~~-------~~~~~y~v~~L~~~~s~~L 64 (734)
+.+|||||++... + .+.+..... ..+-++|.||......... .--..++++.++.++..++
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 4689999997652 1 222221111 1244577777665432211 1112578999998887665
Q ss_pred H
Q 004707 65 F 65 (734)
Q Consensus 65 f 65 (734)
+
T Consensus 194 l 194 (195)
T 1jbk_A 194 L 194 (195)
T ss_dssp C
T ss_pred h
Confidence 3
Done!