Query 004708
Match_columns 734
No_of_seqs 242 out of 1057
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 11:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0954 PHD finger protein [Ge 100.0 1E-37 2.2E-42 349.4 7.9 166 321-504 269-440 (893)
2 KOG0955 PHD finger protein BR1 100.0 2.8E-36 6.2E-41 355.6 8.7 168 321-504 217-397 (1051)
3 KOG0956 PHD finger protein AF1 100.0 3.6E-36 7.8E-41 334.6 6.2 170 320-505 2-185 (900)
4 COG5141 PHD zinc finger-contai 100.0 2.7E-36 5.9E-41 326.3 2.4 168 321-504 191-366 (669)
5 KOG0957 PHD finger protein [Ge 100.0 2.2E-34 4.8E-39 311.9 4.6 285 324-648 120-431 (707)
6 PF13832 zf-HC5HC2H_2: PHD-zin 99.9 5.7E-24 1.2E-28 193.9 8.2 106 394-500 2-110 (110)
7 PF13771 zf-HC5HC2H: PHD-like 99.6 1.4E-15 3.1E-20 133.8 3.3 85 415-501 1-90 (90)
8 KOG1080 Histone H3 (Lys4) meth 99.0 1.4E-10 3E-15 139.3 5.7 144 318-484 568-716 (1005)
9 PF13831 PHD_2: PHD-finger; PD 99.0 5.3E-11 1.2E-15 89.8 0.4 35 336-370 1-36 (36)
10 KOG0954 PHD finger protein [Ge 98.6 9.6E-09 2.1E-13 118.0 1.0 152 50-214 740-892 (893)
11 PF00628 PHD: PHD-finger; Int 97.8 1.2E-05 2.5E-10 64.0 2.6 46 325-371 1-50 (51)
12 smart00249 PHD PHD zinc finger 97.7 3.4E-05 7.4E-10 58.6 3.3 44 325-369 1-47 (47)
13 KOG1512 PHD Zn-finger protein 97.3 7.9E-05 1.7E-09 78.9 1.8 49 322-371 313-362 (381)
14 KOG1244 Predicted transcriptio 97.2 0.00016 3.4E-09 76.3 2.6 52 322-374 280-333 (336)
15 KOG1084 Transcription factor T 97.2 0.00015 3.3E-09 80.5 1.7 98 392-501 221-321 (375)
16 KOG4323 Polycomb-like PHD Zn-f 97.1 0.00041 9E-09 78.3 4.9 133 323-501 83-222 (464)
17 KOG4323 Polycomb-like PHD Zn-f 96.8 0.00057 1.2E-08 77.2 1.9 53 321-373 166-225 (464)
18 PF15446 zf-PHD-like: PHD/FYVE 96.6 0.0033 7.1E-08 62.7 5.7 72 325-405 1-84 (175)
19 COG5034 TNG2 Chromatin remodel 96.5 0.016 3.6E-07 61.1 9.8 51 318-371 216-269 (271)
20 KOG0825 PHD Zn-finger protein 95.8 0.0045 9.7E-08 73.0 2.2 52 320-372 212-266 (1134)
21 KOG4299 PHD Zn-finger protein 95.5 0.005 1.1E-07 71.4 1.1 49 323-372 253-305 (613)
22 KOG1973 Chromatin remodeling p 94.8 0.014 3.1E-07 62.3 2.0 49 322-373 218-269 (274)
23 smart00249 PHD PHD zinc finger 94.0 0.057 1.2E-06 40.8 3.1 32 447-480 1-34 (47)
24 PF14446 Prok-RING_1: Prokaryo 92.1 0.1 2.2E-06 43.4 2.1 34 322-355 4-37 (54)
25 KOG0383 Predicted helicase [Ge 91.0 0.17 3.6E-06 60.6 3.3 50 318-371 42-93 (696)
26 KOG0957 PHD finger protein [Ge 89.4 2.1 4.5E-05 49.5 9.9 51 318-369 539-595 (707)
27 PF10198 Ada3: Histone acetylt 89.4 3.9 8.4E-05 39.7 10.6 86 143-229 6-103 (131)
28 KOG1244 Predicted transcriptio 88.7 0.24 5.2E-06 53.1 1.9 73 324-419 225-311 (336)
29 KOG4443 Putative transcription 88.5 0.23 5E-06 58.4 1.9 49 324-373 69-119 (694)
30 PF00628 PHD: PHD-finger; Int 88.3 0.35 7.6E-06 38.3 2.2 30 447-478 1-32 (51)
31 KOG1512 PHD Zn-finger protein 82.7 0.78 1.7E-05 49.5 2.2 49 323-371 258-316 (381)
32 PF02318 FYVE_2: FYVE-type zin 82.0 1 2.2E-05 42.4 2.6 49 324-373 55-104 (118)
33 KOG1245 Chromatin remodeling c 81.1 0.36 7.8E-06 62.0 -1.2 51 322-373 1107-1159(1404)
34 KOG1973 Chromatin remodeling p 78.9 0.92 2E-05 48.8 1.2 31 445-475 219-250 (274)
35 PF00130 C1_1: Phorbol esters/ 77.5 2.4 5.2E-05 33.8 3.0 35 323-357 11-46 (53)
36 PF07649 C1_3: C1-like domain; 73.9 1.4 3.1E-05 31.8 0.7 28 325-353 2-29 (30)
37 cd00029 C1 Protein kinase C co 72.6 2.1 4.4E-05 33.3 1.4 35 323-357 11-46 (50)
38 KOG1473 Nucleosome remodeling 72.6 3.3 7.2E-05 51.8 3.7 113 318-476 339-458 (1414)
39 KOG1044 Actin-binding LIM Zn-f 69.9 2.2 4.8E-05 50.0 1.4 145 322-481 41-225 (670)
40 cd04718 BAH_plant_2 BAH, or Br 69.7 2.8 6E-05 41.6 1.8 27 348-374 1-29 (148)
41 PF03107 C1_2: C1 domain; Int 69.7 4.3 9.4E-05 29.5 2.4 27 325-353 2-29 (30)
42 smart00109 C1 Protein kinase C 68.4 2 4.4E-05 33.0 0.5 34 323-356 11-44 (49)
43 KOG4443 Putative transcription 67.4 3.1 6.7E-05 49.5 1.9 48 324-371 19-70 (694)
44 PF07227 DUF1423: Protein of u 64.2 5.4 0.00012 45.8 3.0 30 325-354 130-161 (446)
45 COG5034 TNG2 Chromatin remodel 63.1 4.1 8.9E-05 43.6 1.7 32 446-478 222-255 (271)
46 PF13901 DUF4206: Domain of un 61.1 7.7 0.00017 40.0 3.3 44 322-372 151-198 (202)
47 KOG1701 Focal adhesion adaptor 59.6 5.5 0.00012 45.4 2.0 118 361-500 321-458 (468)
48 KOG0825 PHD Zn-finger protein 59.3 12 0.00026 45.6 4.8 50 445-504 215-267 (1134)
49 PF07649 C1_3: C1-like domain; 54.0 6.9 0.00015 28.3 1.1 27 447-475 2-30 (30)
50 PF14197 Cep57_CLD_2: Centroso 51.7 63 0.0014 28.2 6.8 60 163-229 2-63 (69)
51 PF11793 FANCL_C: FANCL C-term 47.1 9.7 0.00021 32.9 1.1 32 324-355 3-38 (70)
52 PF03107 C1_2: C1 domain; Int 47.0 15 0.00033 26.6 2.0 27 447-475 2-30 (30)
53 PLN02638 cellulose synthase A 46.6 12 0.00026 47.2 2.3 50 322-372 16-68 (1079)
54 PLN02400 cellulose synthase 46.4 15 0.00032 46.5 2.9 50 322-372 35-87 (1085)
55 PF14569 zf-UDP: Zinc-binding 44.6 3.5 7.6E-05 36.8 -1.9 49 322-371 8-59 (80)
56 PF10367 Vps39_2: Vacuolar sor 44.3 21 0.00046 31.8 3.0 30 323-354 78-107 (109)
57 PLN02436 cellulose synthase A 41.7 17 0.00037 45.9 2.5 49 323-372 36-87 (1094)
58 KOG3799 Rab3 effector RIM1 and 40.2 11 0.00023 37.1 0.4 50 323-372 65-116 (169)
59 PLN02195 cellulose synthase A 39.7 19 0.00042 45.1 2.5 49 323-372 6-57 (977)
60 KOG4299 PHD Zn-finger protein 38.5 12 0.00025 44.6 0.4 46 323-372 47-95 (613)
61 PF08746 zf-RING-like: RING-li 38.0 16 0.00035 28.9 1.0 30 448-477 1-30 (43)
62 PLN02915 cellulose synthase A 36.9 22 0.00048 44.9 2.4 50 322-372 14-66 (1044)
63 PLN02189 cellulose synthase 36.3 23 0.00049 44.8 2.4 49 323-372 34-85 (1040)
64 KOG1844 PHD Zn-finger proteins 35.9 21 0.00045 41.1 1.9 47 327-373 89-136 (508)
65 PF10497 zf-4CXXC_R1: Zinc-fin 35.2 28 0.0006 32.6 2.2 62 320-403 4-81 (105)
66 PF14446 Prok-RING_1: Prokaryo 34.4 28 0.00061 29.2 1.9 37 445-483 5-44 (54)
67 KOG1084 Transcription factor T 32.6 9.8 0.00021 43.0 -1.4 112 391-505 122-253 (375)
68 PF10367 Vps39_2: Vacuolar sor 32.4 21 0.00046 31.8 1.0 31 445-476 78-108 (109)
69 PF13764 E3_UbLigase_R4: E3 ub 32.4 1.1E+02 0.0023 38.3 7.1 29 320-348 465-498 (802)
70 PF13832 zf-HC5HC2H_2: PHD-zin 29.6 30 0.00066 31.6 1.5 31 322-355 54-86 (110)
71 PF11793 FANCL_C: FANCL C-term 29.5 30 0.00064 29.9 1.3 33 446-478 3-40 (70)
72 PF13639 zf-RING_2: Ring finge 29.2 21 0.00046 27.4 0.4 30 325-355 2-31 (44)
73 COG5194 APC11 Component of SCF 29.1 18 0.00039 32.7 -0.1 32 446-477 21-65 (88)
74 PF00641 zf-RanBP: Zn-finger i 23.5 40 0.00088 24.2 0.9 25 361-400 2-26 (30)
75 KOG4552 Vitamin-D-receptor int 23.3 6.5E+02 0.014 26.9 9.8 15 214-228 111-125 (272)
76 smart00109 C1 Protein kinase C 23.0 42 0.0009 25.6 1.0 32 446-479 12-46 (49)
77 smart00744 RINGv The RING-vari 22.8 19 0.00042 29.0 -0.9 31 325-355 1-34 (49)
78 PF11781 RRN7: RNA polymerase 21.8 72 0.0016 24.5 2.0 27 322-348 7-34 (36)
79 KOG0695 Serine/threonine prote 20.6 38 0.00082 38.3 0.4 35 323-357 141-176 (593)
No 1
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=100.00 E-value=1e-37 Score=349.37 Aligned_cols=166 Identities=32% Similarity=0.788 Sum_probs=149.8
Q ss_pred CCCCcccccCCCCC-CCCCEEEecCCCceeccccccCCCCCCCccccccchhhccCCCCCCCCCCccCCCCcccccccCC
Q 004708 321 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCG 399 (734)
Q Consensus 321 e~~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C~LCp 399 (734)
+++..|+||+.++. ..|+|||||+|++.|||.|||+..+|+++|||+.|.... .+.|+|||
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~------------------~ppCvLCP 330 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGI------------------EPPCVLCP 330 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccC------------------CCCeeecc
Confidence 36789999999886 589999999999999999999999999999999999852 66899999
Q ss_pred CCCCCcccccCC-ceeeeecccccceeeeccC-ccccccccccccCC--CccccccCCCCceeeecCCCCCCcccchhcc
Q 004708 400 GTTGAFRKSANG-QWVHAFCAEWVFESTFRRG-QVNPVAGMEAFPKG--IDVCCICRHKHGICIKCNYGNCQTTFHPTCA 475 (734)
Q Consensus 400 ~~gGaLK~T~~g-~WVHV~CALW~PEv~f~n~-~l~pV~GIe~I~r~--k~~CsiC~~~~GA~IqCs~~~C~~sFH~tCA 475 (734)
.+||+||.+.+| +|+||.||||+|||+|.+. .|+||..+..|+.. .+.|.+|+.+.||||+|++++|.++||++||
T Consensus 331 kkGGamK~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA 410 (893)
T KOG0954|consen 331 KKGGAMKPTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCA 410 (893)
T ss_pred ccCCcccccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhh
Confidence 999999999877 8999999999999999885 79999999999876 5899999999999999999999999999999
Q ss_pred ccCCceEEEee-CCCceeeeEeCCCCChhh
Q 004708 476 RSAGFYLNVKS-TGGNFQHKAYCEKHSLEQ 504 (734)
Q Consensus 476 ~~aG~~m~~k~-~~g~~~~~~yC~kHs~~q 504 (734)
+.+|..|.+-. .++...++.||.+|+..+
T Consensus 411 ~~aG~~~~~~~~~~D~v~~~s~c~khs~~~ 440 (893)
T KOG0954|consen 411 FEAGLEMKTILKENDEVKFKSYCSKHSDHR 440 (893)
T ss_pred hhcCCeeeeeeccCCchhheeecccccccc
Confidence 99999998643 345667899999998654
No 2
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=355.56 Aligned_cols=168 Identities=36% Similarity=0.812 Sum_probs=150.3
Q ss_pred CCCCcccccCCCCC-CCCCEEEecCCCceeccccccCCCCCCCccccccchhhccCCCCCCCCCCccCCCCcccccccCC
Q 004708 321 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCG 399 (734)
Q Consensus 321 e~~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C~LCp 399 (734)
+.+.+|+||.+.+. +.|.|||||+|+++|||+|||+..+|+|.|+|+.|....+ ..+.|.||+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~----------------~~v~c~~cp 280 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQ----------------RPVRCLLCP 280 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcC----------------cccceEecc
Confidence 55789999999886 5799999999999999999999999999999999998632 357999999
Q ss_pred CCCCCcccccCCceeeeecccccceeeeccC-ccccccccccccCC--CccccccCCCC-ceeeecCCCCCCcccchhcc
Q 004708 400 GTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVAGMEAFPKG--IDVCCICRHKH-GICIKCNYGNCQTTFHPTCA 475 (734)
Q Consensus 400 ~~gGaLK~T~~g~WVHV~CALW~PEv~f~n~-~l~pV~GIe~I~r~--k~~CsiC~~~~-GA~IqCs~~~C~~sFH~tCA 475 (734)
..+||||+|.+|+|+|++||+|+||++|.+. .+++|.+++.|+.. ++.|++|+.++ |+||+|+..+|.++||++||
T Consensus 281 ~~~gAFkqt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca 360 (1051)
T KOG0955|consen 281 SKGGAFKQTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCA 360 (1051)
T ss_pred CCCCcceeccCCceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhH
Confidence 9999999999999999999999999999986 68999999999865 79999999998 99999999999999999999
Q ss_pred ccCCceEEEeeC--C------CceeeeEeCCCCChhh
Q 004708 476 RSAGFYLNVKST--G------GNFQHKAYCEKHSLEQ 504 (734)
Q Consensus 476 ~~aG~~m~~k~~--~------g~~~~~~yC~kHs~~q 504 (734)
+++|++|..... . -.+....||..|.+..
T Consensus 361 ~~agl~m~~~~~~~~s~~~~s~~v~~~syC~~H~pp~ 397 (1051)
T KOG0955|consen 361 RRAGLYMKSNTVKELSKNGTSQSVNKISYCDKHTPPG 397 (1051)
T ss_pred hhcCceEeecccccccccccccccceeeeccCCCCch
Confidence 999999985311 1 1246789999999864
No 3
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=100.00 E-value=3.6e-36 Score=334.62 Aligned_cols=170 Identities=34% Similarity=0.792 Sum_probs=146.7
Q ss_pred CCCCCcccccCCCCC-CCCCEEEecC--CCceeccccccCCCCCCCccccccchhhccCCCCCCCCCCccCCCCcccccc
Q 004708 320 KEHPRSCDICRRSET-ILNPILICSG--CKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECS 396 (734)
Q Consensus 320 ke~~~~CsVC~~~E~-~~N~IV~Cd~--C~iaVHq~CYGv~~ip~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C~ 396 (734)
||...-||||-|... .+|+|||||+ |.++|||.||||+++|+|+|||++|+.... . ..+.|.
T Consensus 2 KEMVGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqer--a-------------arvrCe 66 (900)
T KOG0956|consen 2 KEMVGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQER--A-------------ARVRCE 66 (900)
T ss_pred cccccceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhh--h-------------ccceee
Confidence 456678999998545 4899999996 999999999999999999999999997522 1 168999
Q ss_pred cCCCCCCCcccccCCceeeeecccccceeeeccC-ccccccccccccCC--CccccccCCC-------CceeeecCCCCC
Q 004708 397 LCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVAGMEAFPKG--IDVCCICRHK-------HGICIKCNYGNC 466 (734)
Q Consensus 397 LCp~~gGaLK~T~~g~WVHV~CALW~PEv~f~n~-~l~pV~GIe~I~r~--k~~CsiC~~~-------~GA~IqCs~~~C 466 (734)
|||.++||||+|++|-|+||+||||+|||.|.|- .|+||- +..|+.. +..|+||+.. .|||++|...+|
T Consensus 67 LCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIi-Lq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~C 145 (900)
T KOG0956|consen 67 LCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPII-LQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGC 145 (900)
T ss_pred cccCcccceecccCCCceEEEEEeeccceeeccccccccee-eccCchhhhcceeeeecccCCccccccccceecccccc
Confidence 9999999999999999999999999999999996 699974 5667754 6899999973 699999999999
Q ss_pred CcccchhccccCCceEEEeeC-CCceeeeEeCCCCChhhH
Q 004708 467 QTTFHPTCARSAGFYLNVKST-GGNFQHKAYCEKHSLEQK 505 (734)
Q Consensus 467 ~~sFH~tCA~~aG~~m~~k~~-~g~~~~~~yC~kHs~~q~ 505 (734)
.+.|||+||+.+|+..+..+. -++++|=-||+.|..+.+
T Consensus 146 kqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 146 KQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred hhhhhhhHhhhhccceeccccccccceechhHHHHHHHhh
Confidence 999999999999999876532 356788889999987544
No 4
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-36 Score=326.28 Aligned_cols=168 Identities=32% Similarity=0.702 Sum_probs=147.2
Q ss_pred CCCCcccccCCCCC-CCCCEEEecCCCceeccccccCCCCCCCccccccchhhccCCCCCCCCCCccCCCCcccccccCC
Q 004708 321 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCG 399 (734)
Q Consensus 321 e~~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C~LCp 399 (734)
+.+..|.||...+. +.|.||+||+|+++|||.|||+..+|+|.|||++|..... ...-|.+||
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~----------------~i~~C~fCp 254 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEY----------------QIRCCSFCP 254 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhccccc----------------ceeEEEecc
Confidence 45789999998776 5799999999999999999999999999999999998632 245699999
Q ss_pred CCCCCcccccCCceeeeecccccceeeeccC-ccccccccccccCC--CccccccCCCCceeeecCCCCCCcccchhccc
Q 004708 400 GTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVAGMEAFPKG--IDVCCICRHKHGICIKCNYGNCQTTFHPTCAR 476 (734)
Q Consensus 400 ~~gGaLK~T~~g~WVHV~CALW~PEv~f~n~-~l~pV~GIe~I~r~--k~~CsiC~~~~GA~IqCs~~~C~~sFH~tCA~ 476 (734)
...||||+|.+|.|+|++||+|+|+++|.+- .++||+||.+++.. ++.|.||+..+|+||+|++.+|.++||++||+
T Consensus 255 s~dGaFkqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCAr 334 (669)
T COG5141 255 SSDGAFKQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCAR 334 (669)
T ss_pred CCCCceeeccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhh
Confidence 9999999999999999999999999999985 68999999998876 68999999999999999999999999999999
Q ss_pred cCCceEE-EeeCCC---ceeeeEeCCCCChhh
Q 004708 477 SAGFYLN-VKSTGG---NFQHKAYCEKHSLEQ 504 (734)
Q Consensus 477 ~aG~~m~-~k~~~g---~~~~~~yC~kHs~~q 504 (734)
++|+++. ....++ .+...-||.+|.+..
T Consensus 335 rag~f~~~~~s~n~~s~~id~e~~c~kh~p~g 366 (669)
T COG5141 335 RAGYFDLNIYSHNGISYCIDHEPLCRKHYPLG 366 (669)
T ss_pred hcchhhhhhhcccccceeecchhhhcCCCCcc
Confidence 9999875 322222 234567999998743
No 5
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=311.91 Aligned_cols=285 Identities=27% Similarity=0.496 Sum_probs=199.8
Q ss_pred CcccccCCCCC-CCCCEEEecCCCceeccccccCCC---CC-------CCccccccchhhccCCCCCCCCCCccCCCCcc
Q 004708 324 RSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK---ES-------TGPWYCELCEELLSSRSSGAPSVNFWEKPYFV 392 (734)
Q Consensus 324 ~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~---ip-------~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~ 392 (734)
..|+||..... +.|+||.||+|+|.||..|||+.. |+ ..+|||+.|.+..+ .
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs-----------------~ 182 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS-----------------L 182 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC-----------------C
Confidence 37999997544 468999999999999999999862 22 36899999999753 4
Q ss_pred cccccCCCCCCCcccccCCceeeeecccccceeeeccC-cccccc--ccccccCCCccccccCCC----CceeeecCCCC
Q 004708 393 AECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVA--GMEAFPKGIDVCCICRHK----HGICIKCNYGN 465 (734)
Q Consensus 393 ~~C~LCp~~gGaLK~T~~g~WVHV~CALW~PEv~f~n~-~l~pV~--GIe~I~r~k~~CsiC~~~----~GA~IqCs~~~ 465 (734)
+.|.|||.++|+||.|+-|+|||++||||+|+|.|... .+.+|. .|...+.+...|++|..+ .|.||.|..+.
T Consensus 183 P~CElCPn~~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGM 262 (707)
T KOG0957|consen 183 PHCELCPNRFGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGM 262 (707)
T ss_pred CccccCCCcCCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhhcceeeeccchh
Confidence 69999999999999999999999999999999999864 455543 222233457899999974 89999999999
Q ss_pred CCcccchhccccCCceEEEeeCCCc-eeeeEeCCCCChhhHhhhhhhccchhhhhhhhHHHHHHHHHHHHHH-----HHH
Q 004708 466 CQTTFHPTCARSAGFYLNVKSTGGN-FQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCE-----RII 539 (734)
Q Consensus 466 C~~sFH~tCA~~aG~~m~~k~~~g~-~~~~~yC~kHs~~q~~k~~~q~~g~~elkslrrlrv~lE~lrll~~-----riv 539 (734)
|..+|||+||+..|+.++...+++. ..+.+||++|+.....+--.+.|...+...++|+++. ++|+.-.+ .--
T Consensus 263 Ck~YfHVTCAQk~GlLvea~~e~DiAdpfya~CK~Ht~r~~~K~~rrny~~l~~~~~~r~~~k-~~L~~~e~~~~p~~~e 341 (707)
T KOG0957|consen 263 CKEYFHVTCAQKLGLLVEATDENDIADPFYAFCKKHTNRDNLKPYRRNYDDLEKSEARRITVK-RRLRSGELEKNPQKKE 341 (707)
T ss_pred hhhhhhhhHHhhhcceeeccccccchhhHHHHHHhhcchhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhcccccCCCccH
Confidence 9999999999999999987655443 3788999999986655444556666666677777652 22211100 001
Q ss_pred HHHHHHHHHhhhhHHHHhhcccccchhcccccCcccCCCCCccccccccccCCCCCCchhHhhccCCCeEEecccccccc
Q 004708 540 KREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNR 619 (734)
Q Consensus 540 kREklkrel~~~~~~ila~krd~~~a~s~~v~sp~~~~~~s~~~a~ts~~~~~~~~~s~~~~~~r~d~~~~ds~~s~k~~ 619 (734)
.|.++.++|....+.- . .+.+ .-..+|+|....+...| |.-+|+.|...++.--++|.||
T Consensus 342 aqari~~~l~kv~~k~-~------~~k~-~~p~~wvp~~K~~RlLt-----------sSAsa~rrl~~KAE~mg~s~~~- 401 (707)
T KOG0957|consen 342 AQARIREELDKVIEKE-C------KNKP-KGPISWVPKPKQARLLT-----------SSASAFRRLETKAEEMGLSRKE- 401 (707)
T ss_pred HHHHHHHHHHHHHHHH-H------hccC-CCCCCCCcccccccccc-----------chHHHHHHHHHHHHHhcccHhh-
Confidence 1222222332222211 1 1122 12357888887776444 4456788888877777888888
Q ss_pred ccccCCC-ccccccC--CCCCccCCCCCCCcc
Q 004708 620 IKVYVPM-DADQRTD--DSSMSQNLYPRKPSE 648 (734)
Q Consensus 620 ~~~~~~~-~~~~~~~--~~s~s~~~~~~~~~~ 648 (734)
|++ .+ |+--+++ .=|+.++.|+.++.+
T Consensus 402 f~~--~ead~~~~id~r~k~Hv~pafs~efi~ 431 (707)
T KOG0957|consen 402 FRQ--READPFFNIDLRSKSHVPPAFSKEFIE 431 (707)
T ss_pred hcc--cccCccccccccccccCCccccHHHHH
Confidence 553 22 2222222 346899999988753
No 6
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.90 E-value=5.7e-24 Score=193.91 Aligned_cols=106 Identities=43% Similarity=0.980 Sum_probs=96.4
Q ss_pred ccccCCCCCCCcccccCCceeeeecccccceeeeccC-ccccccccccccCC--CccccccCCCCceeeecCCCCCCccc
Q 004708 394 ECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVAGMEAFPKG--IDVCCICRHKHGICIKCNYGNCQTTF 470 (734)
Q Consensus 394 ~C~LCp~~gGaLK~T~~g~WVHV~CALW~PEv~f~n~-~l~pV~GIe~I~r~--k~~CsiC~~~~GA~IqCs~~~C~~sF 470 (734)
.|.||+..+|+||+|.++.|||++||+|+|+++|.+. .+++|. ++.|++. +..|.+|+...|++|+|..++|.++|
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~f 80 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVD-ISNIPPSRFKLKCSICGKSGGACIKCSHPGCSTAF 80 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCccc-ceeecchhcCCcCcCCCCCCceeEEcCCCCCCcCC
Confidence 6999999999999999999999999999999999986 477777 7777764 79999999999999999999999999
Q ss_pred chhccccCCceEEEeeCCCceeeeEeCCCC
Q 004708 471 HPTCARSAGFYLNVKSTGGNFQHKAYCEKH 500 (734)
Q Consensus 471 H~tCA~~aG~~m~~k~~~g~~~~~~yC~kH 500 (734)
||+||+.+|+.+++...+....+.+||++|
T Consensus 81 H~~CA~~~g~~~~~~~~~~~~~~~~~C~~H 110 (110)
T PF13832_consen 81 HPTCARKAGLYFEIENEEDNVQFIAYCPKH 110 (110)
T ss_pred CHHHHHHCCCeEEeeecCCCceEEEECCCC
Confidence 999999999999987655466889999999
No 7
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.56 E-value=1.4e-15 Score=133.76 Aligned_cols=85 Identities=34% Similarity=0.686 Sum_probs=72.1
Q ss_pred eeecccccceeeeccCc---cccccccccccC--CCccccccCCCCceeeecCCCCCCcccchhccccCCceEEEeeCCC
Q 004708 415 HAFCAEWVFESTFRRGQ---VNPVAGMEAFPK--GIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGG 489 (734)
Q Consensus 415 HV~CALW~PEv~f~n~~---l~pV~GIe~I~r--~k~~CsiC~~~~GA~IqCs~~~C~~sFH~tCA~~aG~~m~~k~~~g 489 (734)
|++||+|+|++++.+.. +.+|.+++.+.+ .++.|++|+++.||+|+|..++|.++||++||+.+|+.+.+.. .
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~--~ 78 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFDE--D 78 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEcc--C
Confidence 89999999999998753 456677766543 3699999999889999999999999999999999999998864 2
Q ss_pred ceeeeEeCCCCC
Q 004708 490 NFQHKAYCEKHS 501 (734)
Q Consensus 490 ~~~~~~yC~kHs 501 (734)
...+.+||++|+
T Consensus 79 ~~~~~~~C~~H~ 90 (90)
T PF13771_consen 79 NGKFRIFCPKHS 90 (90)
T ss_pred CCceEEEChhcC
Confidence 336899999996
No 8
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.05 E-value=1.4e-10 Score=139.26 Aligned_cols=144 Identities=34% Similarity=0.747 Sum_probs=120.1
Q ss_pred CCCCCCCcccccCCCCC-CCCCEEEecCCCceeccccccCCCCC-CCccccccchhhccCCCCCCCCCCccCCCCccccc
Q 004708 318 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKES-TGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAEC 395 (734)
Q Consensus 318 ~~ke~~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~ip-~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C 395 (734)
........|.+|+..+. ..|.++.|+.|...||+.|||....+ .-.|+|+.|.... ....|
T Consensus 568 l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~-----------------~~r~~ 630 (1005)
T KOG1080|consen 568 LSKWTTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCETLD-----------------IKRSC 630 (1005)
T ss_pred hcCCCcccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhcccccc-----------------CCchh
Confidence 44455678999998764 57999999999999999999998776 4579999999741 16789
Q ss_pred ccCCCCCCCcccccCCceeeeecccccceeeeccC-ccccccccccccCC--CccccccCCCCceeeecCCCCCCcccch
Q 004708 396 SLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVAGMEAFPKG--IDVCCICRHKHGICIKCNYGNCQTTFHP 472 (734)
Q Consensus 396 ~LCp~~gGaLK~T~~g~WVHV~CALW~PEv~f~n~-~l~pV~GIe~I~r~--k~~CsiC~~~~GA~IqCs~~~C~~sFH~ 472 (734)
++|+..+|+++++..|.|+|+-||.|.+++-+.+. .|.|+.|+..++.. ...|.+ .|.|.+|+ .|...||.
T Consensus 631 ~l~~~~g~al~p~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~----~~~~~~~~--~~~~~~~~ 704 (1005)
T KOG1080|consen 631 CLCPVKGGALKPTDEGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI----HGSCRQCC--KCETGSHA 704 (1005)
T ss_pred hhccccCcccCCCCccchhhhhchhccccccCCCccCCCCcccccccCccchhhhccc----cccccccc--hhhhccee
Confidence 99999999999999999999999999999999875 58887777666653 345555 57788888 99999999
Q ss_pred hccccCCceEEE
Q 004708 473 TCARSAGFYLNV 484 (734)
Q Consensus 473 tCA~~aG~~m~~ 484 (734)
.||..+|+.++.
T Consensus 705 ~~a~~~~~~~~~ 716 (1005)
T KOG1080|consen 705 MCASRAGYIMEA 716 (1005)
T ss_pred hhhcCccChhhh
Confidence 999999988753
No 9
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=99.02 E-value=5.3e-11 Score=89.76 Aligned_cols=35 Identities=46% Similarity=1.149 Sum_probs=21.6
Q ss_pred CCCEEEecCCCceeccccccCCCCCCC-ccccccch
Q 004708 336 LNPILICSGCKVAVHLDCYRNAKESTG-PWYCELCE 370 (734)
Q Consensus 336 ~N~IV~Cd~C~iaVHq~CYGv~~ip~g-~WlCd~C~ 370 (734)
.|+||+|++|++.||+.|||+..++.+ .|+|++|+
T Consensus 1 ~n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 1 TNPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp -CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CCceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 389999999999999999999988865 89999995
No 10
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.61 E-value=9.6e-09 Score=118.00 Aligned_cols=152 Identities=36% Similarity=0.509 Sum_probs=129.7
Q ss_pred ccccccCCCCCCCCCCcccccccCCCCCccccchhhhhh-hccccCccCCCccccccCcccccccccccCCCccCCccCc
Q 004708 50 LLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKS-LQMQSGLLSGNKVHKSDGDTEISRLEASSTASVCCNHQGR 128 (734)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (734)
+-|..+|.++-+..++....+++++.|.+|..|-||++. ..+....++ ....+..+.+|..+..-+......++
T Consensus 740 rsn~s~~s~n~ni~~~~sss~~~~~~~p~fsph~~~~~s~s~s~~e~~s-----ks~~~s~~~~~kq~y~~~~~~~~~~~ 814 (893)
T KOG0954|consen 740 RSNSSQNSGNGNIPNPISSSLFNQEAYPGFSPHRYIHKSLSESGKEQTS-----KSSTDSDVARMKQTYTHLAGSEEGNK 814 (893)
T ss_pred ccCcccccCCCcCCCCcchhhhccccCCCCCcchhhhhhhhhhcccccc-----cccccCCcchhhheecccccccchhh
Confidence 346677888888888999999999999999999999999 555544444 45566667777755555556666677
Q ss_pred cCccCCCcccCCccchHHHHHhhhccccccCCCccchhHHHHHHHHHHhhHHHhhhhhHHHHHHHHHhhhHHHHHhhccc
Q 004708 129 HSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRR 208 (734)
Q Consensus 129 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~p~de~e~E~~~~q~~L~~~~~~~~~~~~~lv~ev~k~~~~e~~~~~~r~ 208 (734)
++.... ++-|+++++.+|+++.+|.|+.++|..|.|..|++.+..++...+++..+++++++-|++...+++
T Consensus 815 q~~g~e--------~~~~~s~~~p~~~~d~s~~D~e~~~~~~~q~~~~g~~r~rkqssd~~n~~~asr~~~~~~~~~g~~ 886 (893)
T KOG0954|consen 815 QLQGAE--------TFLQLSKARPLGILDLSPEDEEEGELLYYQLQLLGTARSRKQSSDNLNYEVASRLPLEIDEQHGRR 886 (893)
T ss_pred HHHHHH--------HHHHhhccCCcccccCCCCchhhhhHHhhhhccccceecccccccCcChhhhccCCCccccccCcC
Confidence 777766 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHH
Q 004708 209 WDAVLV 214 (734)
Q Consensus 209 w~~~~~ 214 (734)
|+..++
T Consensus 887 ~~~s~~ 892 (893)
T KOG0954|consen 887 WDDSLV 892 (893)
T ss_pred cchhhc
Confidence 998765
No 11
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.82 E-value=1.2e-05 Score=63.99 Aligned_cols=46 Identities=26% Similarity=0.775 Sum_probs=38.3
Q ss_pred cccccCCCCCCCCCEEEecCCCceeccccccCCCC----CCCccccccchh
Q 004708 325 SCDICRRSETILNPILICSGCKVAVHLDCYRNAKE----STGPWYCELCEE 371 (734)
Q Consensus 325 ~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~~i----p~g~WlCd~C~~ 371 (734)
+|.||... ...+.+|+|+.|+..+|..|+|+... +.+.|+|..|..
T Consensus 1 ~C~vC~~~-~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS-DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS-CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc-CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 48899983 34789999999999999999998743 345899999974
No 12
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.35 E-value=7.9e-05 Score=78.88 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=42.6
Q ss_pred CCCcccccCCCCCCCCCEEEecCCCceeccccccCCCCCCCccccc-cchh
Q 004708 322 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCE-LCEE 371 (734)
Q Consensus 322 ~~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd-~C~~ 371 (734)
....|.||..++- ..+++|||.|+..+|..|.|...+|.|.|.|| .|..
T Consensus 313 ~C~lC~IC~~P~~-E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 313 SCELCRICLGPVI-ESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred ccHhhhccCCccc-chheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 4668999998654 57999999999999999999999999999999 3444
No 14
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.24 E-value=0.00016 Score=76.26 Aligned_cols=52 Identities=33% Similarity=0.781 Sum_probs=44.7
Q ss_pred CCCcccccCCCCCCCCCEEEecCCCceeccccccCCC--CCCCccccccchhhcc
Q 004708 322 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAK--ESTGPWYCELCEELLS 374 (734)
Q Consensus 322 ~~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~~--ip~g~WlCd~C~~~~~ 374 (734)
+...|+||+.+|+ +++|||||.|+..+|-+|...+. .|+|.|-|..|.....
T Consensus 280 eck~csicgtsen-ddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~~ 333 (336)
T KOG1244|consen 280 ECKYCSICGTSEN-DDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELK 333 (336)
T ss_pred ecceeccccCcCC-CceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHHh
Confidence 4678999998775 68999999999999999999764 4799999999998643
No 15
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=97.17 E-value=0.00015 Score=80.47 Aligned_cols=98 Identities=24% Similarity=0.405 Sum_probs=73.2
Q ss_pred ccccccCCCCCCCcccc-cCCceeeeecccccceeeeccC-ccccccccccccCC-CccccccCCCCceeeecCCCCCCc
Q 004708 392 VAECSLCGGTTGAFRKS-ANGQWVHAFCAEWVFESTFRRG-QVNPVAGMEAFPKG-IDVCCICRHKHGICIKCNYGNCQT 468 (734)
Q Consensus 392 ~~~C~LCp~~gGaLK~T-~~g~WVHV~CALW~PEv~f~n~-~l~pV~GIe~I~r~-k~~CsiC~~~~GA~IqCs~~~C~~ 468 (734)
...|++++..+ .+. ....|+|+.|++|.+.+.+..+ .+..+.. .+-+. .+.|..|++ .|+.+.|....|..
T Consensus 221 e~~~~l~~~~~---~~d~~~~~~~h~~c~~~~~~~~~~q~~~l~~~~~--~v~r~~~~~c~~c~k-~ga~~~c~~~~~~~ 294 (375)
T KOG1084|consen 221 EFFCALSPKAT---IPDIGFELWYHRYCALWAPNVHESQGGQLTNVDN--AVIRFPSLQCILCQK-PGATLKCVQASLLS 294 (375)
T ss_pred hhhhhhcCCCc---CCccchhHHHHHHHHhcCCcceeccCccccCchh--hhhcccchhcccccC-CCCchhhhhhhhhc
Confidence 34788887633 333 4568999999999999999875 5655432 22222 379999998 69999999999999
Q ss_pred ccchhccccCCceEEEeeCCCceeeeEeCCCCC
Q 004708 469 TFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHS 501 (734)
Q Consensus 469 sFH~tCA~~aG~~m~~k~~~g~~~~~~yC~kHs 501 (734)
.+|.+|+.........+ ..+++|+.|.
T Consensus 295 ~~h~~c~~~~~~~~~~~------~r~v~~~~h~ 321 (375)
T KOG1084|consen 295 NAHFPCARAKNGIPLDY------DRKVSCPRHR 321 (375)
T ss_pred ccCcccccCcccccchh------hhhccCCCCC
Confidence 99999998875443322 3678999999
No 16
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.15 E-value=0.00041 Score=78.29 Aligned_cols=133 Identities=16% Similarity=0.237 Sum_probs=89.1
Q ss_pred CCcccccCCCCC-CCCCEEEecCCCceeccccccCCCCCCCccccccchhhccCCCCCCCCCCccCCCCcccccccCCCC
Q 004708 323 PRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGT 401 (734)
Q Consensus 323 ~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C~LCp~~ 401 (734)
...|.||..... ..|.++.|++|+...||.|--......+.|.|..|..... ...
T Consensus 83 e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~------------------------~~~ 138 (464)
T KOG4323|consen 83 ELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIF------------------------SQE 138 (464)
T ss_pred ccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCcccccccccccc------------------------ccc
Confidence 367999997433 4789999999999999999665545568899999887532 244
Q ss_pred CCCcccccCCceeeeecccccceeeeccCccccccccc--cccCCCccccccCCC----CceeeecCCCCCCcccchhcc
Q 004708 402 TGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGME--AFPKGIDVCCICRHK----HGICIKCNYGNCQTTFHPTCA 475 (734)
Q Consensus 402 gGaLK~T~~g~WVHV~CALW~PEv~f~n~~l~pV~GIe--~I~r~k~~CsiC~~~----~GA~IqCs~~~C~~sFH~tCA 475 (734)
||++|.. .-+| +-+.|.. .+++ ...+..+.|+||..- .--+|+|+ .|.++||-.|.
T Consensus 139 g~a~K~g---~~a~-------~~l~y~~------~~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~--~C~~~fHq~Ch 200 (464)
T KOG4323|consen 139 GGALKKG---RLAR-------PSLPYPE------ASLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCD--KCRQWYHQACH 200 (464)
T ss_pred ccccccc---cccc-------ccccCcc------cccccCccccccceeeeeecCCcCccceeeeec--ccccHHHHHhc
Confidence 6777644 3444 3333321 1111 123345669999852 22679999 99999999999
Q ss_pred ccCCceEEEeeCCCceeeeEeCCCCC
Q 004708 476 RSAGFYLNVKSTGGNFQHKAYCEKHS 501 (734)
Q Consensus 476 ~~aG~~m~~k~~~g~~~~~~yC~kHs 501 (734)
+..--.+.+. ...+..||..=.
T Consensus 201 qp~i~~~l~~----D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 201 QPLIKDELAG----DPFYEWFCDVCN 222 (464)
T ss_pred cCCCCHhhcc----CccceEeehhhc
Confidence 8865555442 234667776544
No 17
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.78 E-value=0.00057 Score=77.22 Aligned_cols=53 Identities=21% Similarity=0.556 Sum_probs=42.9
Q ss_pred CCCCcccccCCCCC-CCCCEEEecCCCceeccccccCCC------CCCCccccccchhhc
Q 004708 321 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK------ESTGPWYCELCEELL 373 (734)
Q Consensus 321 e~~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~------ip~g~WlCd~C~~~~ 373 (734)
..++.|+||..... ..|+||+|++|+--+|+.|--... .+...|+|..|.+..
T Consensus 166 ~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 166 KVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 34567999997654 678999999999999999987542 356789999999853
No 18
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.62 E-value=0.0033 Score=62.69 Aligned_cols=72 Identities=21% Similarity=0.543 Sum_probs=50.2
Q ss_pred cccccCCC-C-CCCCCEEEecCCCceeccccccCC--------CCCCC--ccccccchhhccCCCCCCCCCCccCCCCcc
Q 004708 325 SCDICRRS-E-TILNPILICSGCKVAVHLDCYRNA--------KESTG--PWYCELCEELLSSRSSGAPSVNFWEKPYFV 392 (734)
Q Consensus 325 ~CsVC~~~-E-~~~N~IV~Cd~C~iaVHq~CYGv~--------~ip~g--~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~ 392 (734)
.|.+|... + ...++||+|.||..++|+.|.|.. ++.++ -.-|+.|......+... .| ..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~--------aP-~~ 71 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPR--------AP-HH 71 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCC--------CC-CC
Confidence 49999752 2 346799999999999999999975 23333 35699999764432211 13 26
Q ss_pred cccccCCCCCCCc
Q 004708 393 AECSLCGGTTGAF 405 (734)
Q Consensus 393 ~~C~LCp~~gGaL 405 (734)
..|..|...|-+-
T Consensus 72 ~~C~~C~~~G~~c 84 (175)
T PF15446_consen 72 GMCQQCKKPGPSC 84 (175)
T ss_pred CcccccCCCCCCC
Confidence 7899999876543
No 19
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.46 E-value=0.016 Score=61.06 Aligned_cols=51 Identities=27% Similarity=0.763 Sum_probs=40.9
Q ss_pred CCCCCCCcccccCCCCCCCCCEEEecC--CCc-eeccccccCCCCCCCccccccchh
Q 004708 318 FSKEHPRSCDICRRSETILNPILICSG--CKV-AVHLDCYRNAKESTGPWYCELCEE 371 (734)
Q Consensus 318 ~~ke~~~~CsVC~~~E~~~N~IV~Cd~--C~i-aVHq~CYGv~~ip~g~WlCd~C~~ 371 (734)
.+..+.+.| -|.+.. .++||-||+ |.. =||..|.|+...|.|.|+|+-|+.
T Consensus 216 ~se~e~lYC-fCqqvS--yGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 216 NSEGEELYC-FCQQVS--YGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred cccCceeEE-Eecccc--cccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 444455555 687754 589999997 876 499999999999999999999985
No 20
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.80 E-value=0.0045 Score=73.00 Aligned_cols=52 Identities=27% Similarity=0.776 Sum_probs=44.3
Q ss_pred CCCCCcccccCCCCCCCCCEEEecCCCce-eccccccCC--CCCCCccccccchhh
Q 004708 320 KEHPRSCDICRRSETILNPILICSGCKVA-VHLDCYRNA--KESTGPWYCELCEEL 372 (734)
Q Consensus 320 ke~~~~CsVC~~~E~~~N~IV~Cd~C~ia-VHq~CYGv~--~ip~g~WlCd~C~~~ 372 (734)
-.....|.||...+. .+.||.||.|+.. +|.+|.... .+|-+.|+|+-|...
T Consensus 212 ~~E~~~C~IC~~~Dp-EdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHDP-EDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred ccccccceeeccCCh-HHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 344578999998765 5789999999999 999999874 478899999999875
No 21
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.52 E-value=0.005 Score=71.44 Aligned_cols=49 Identities=29% Similarity=0.780 Sum_probs=42.7
Q ss_pred CCcccccCCCCCCCCCEEEecCCCceeccccccCC----CCCCCccccccchhh
Q 004708 323 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNA----KESTGPWYCELCEEL 372 (734)
Q Consensus 323 ~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~----~ip~g~WlCd~C~~~ 372 (734)
..+|+-|...+. .|.||.||+|...|||.|.-.+ .+|.|.|+|.-|...
T Consensus 253 ~~fCsaCn~~~~-F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGL-FNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccc-cccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 359999998765 3899999999999999999876 467899999999974
No 22
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=94.82 E-value=0.014 Score=62.34 Aligned_cols=49 Identities=27% Similarity=0.754 Sum_probs=39.6
Q ss_pred CCCcccccCCCCCCCCCEEEecC--CC-ceeccccccCCCCCCCccccccchhhc
Q 004708 322 HPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEELL 373 (734)
Q Consensus 322 ~~~~CsVC~~~E~~~N~IV~Cd~--C~-iaVHq~CYGv~~ip~g~WlCd~C~~~~ 373 (734)
+...| +|.. .....||-||+ |. -=||..|.|+...|.|.|+|..|....
T Consensus 218 e~~yC-~Cnq--vsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 218 EPTYC-ICNQ--VSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCEEE-Eecc--cccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 44555 4543 23589999998 99 789999999999999999999999753
No 23
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.06 E-value=0.1 Score=43.36 Aligned_cols=34 Identities=24% Similarity=0.663 Sum_probs=28.9
Q ss_pred CCCcccccCCCCCCCCCEEEecCCCceecccccc
Q 004708 322 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR 355 (734)
Q Consensus 322 ~~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYG 355 (734)
....|.+|++.-...+.+|+|..|+..+|..||-
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 3468999998544578999999999999999993
No 25
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=91.01 E-value=0.17 Score=60.57 Aligned_cols=50 Identities=22% Similarity=0.636 Sum_probs=40.7
Q ss_pred CCCCCCCcccccCCCCCCCCCEEEecCCCceeccccccCC--CCCCCccccccchh
Q 004708 318 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA--KESTGPWYCELCEE 371 (734)
Q Consensus 318 ~~ke~~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~--~ip~g~WlCd~C~~ 371 (734)
++..+...|.||.+ +..+|.|+.|-..+|.+|.+.. .+|.+.|+|.+|..
T Consensus 42 ~~~~~~e~c~ic~~----~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 42 WDDAEQEACRICAD----GGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred cchhhhhhhhhhcC----CCcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 44556679999998 5688899999999999999876 34556699999944
No 26
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=89.40 E-value=2.1 Score=49.45 Aligned_cols=51 Identities=27% Similarity=0.608 Sum_probs=39.1
Q ss_pred CCCCCCCcccccCCCCCCCCCEEEecCCCceeccccccCCC--CC----CCccccccc
Q 004708 318 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAK--ES----TGPWYCELC 369 (734)
Q Consensus 318 ~~ke~~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~~--ip----~g~WlCd~C 369 (734)
.++.....|.||..+. +.-.++.||-|++.+|..|...+- .| ...|.|.-|
T Consensus 539 ~~~a~~ysCgiCkks~-dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 539 APKAMNYSCGICKKST-DQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred cccccceeeeeeccch-hhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 3444567899999853 245688999999999999998752 23 346999999
No 27
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=89.40 E-value=3.9 Score=39.71 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=56.2
Q ss_pred chHHH--HHhhhcccc---------ccCCCccchhHHHHHHHHHHhhHHHhhhhhHHHHHHHHHhhhH-HHHHhhccchh
Q 004708 143 NLEQV--FKARTRGVL---------ELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQ-EIDVARGRRWD 210 (734)
Q Consensus 143 ~~~q~--~~~~~~~~~---------~~~p~de~e~E~~~~q~~L~~~~~~~~~~~~~lv~ev~k~~~~-e~~~~~~r~w~ 210 (734)
++|+= .-++..||+ +-..+|||-.||..+|.+|-.-...+..+...|+.-+...+.. |+.. --..-|
T Consensus 6 ~lEeRlk~EL~~~Gll~~~d~~d~~~~~eDDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~-~l~~lD 84 (131)
T PF10198_consen 6 SLEERLKRELRYIGLLSEDDDPDWQDNREDDEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKR-ILDDLD 84 (131)
T ss_pred hHHHHHHHHHHHcCCcCCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44443 557889999 3366789999999999999998888888877777555555532 2111 112334
Q ss_pred HHHHhHHHHHHHHHHHcCC
Q 004708 211 AVLVNQYLCELREAKKQGR 229 (734)
Q Consensus 211 ~~~~nq~L~e~reakkq~~ 229 (734)
..+..-|++-.+..++..+
T Consensus 85 ~~V~~aY~Kr~~~~~kkkk 103 (131)
T PF10198_consen 85 KQVEQAYKKRMRARKKKKK 103 (131)
T ss_pred HHHHHHHHHHHHHhhcccC
Confidence 4555667777766555444
No 28
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=88.66 E-value=0.24 Score=53.05 Aligned_cols=73 Identities=25% Similarity=0.600 Sum_probs=52.1
Q ss_pred CcccccCCCC--C----CCCCEEEecCCCceeccccccCC-----CCCCCccccccchhhccCCCCCCCCCCccCCCCcc
Q 004708 324 RSCDICRRSE--T----ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFV 392 (734)
Q Consensus 324 ~~CsVC~~~E--~----~~N~IV~Cd~C~iaVHq~CYGv~-----~ip~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~ 392 (734)
-.|+.|.... + ...+||.|+.|+..-|-+|.-.. .+....|-|.-|++
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~--------------------- 283 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY--------------------- 283 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce---------------------
Confidence 4799999642 2 24579999999999999999754 23467899999985
Q ss_pred cccccCCCCC--C-CcccccCCceeeeecc
Q 004708 393 AECSLCGGTT--G-AFRKSANGQWVHAFCA 419 (734)
Q Consensus 393 ~~C~LCp~~g--G-aLK~T~~g~WVHV~CA 419 (734)
|.+|+... . .|-.-+...-+|+.|.
T Consensus 284 --csicgtsenddqllfcddcdrgyhmycl 311 (336)
T KOG1244|consen 284 --CSICGTSENDDQLLFCDDCDRGYHMYCL 311 (336)
T ss_pred --eccccCcCCCceeEeecccCCceeeEec
Confidence 66776532 2 2223344577898885
No 29
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=88.52 E-value=0.23 Score=58.42 Aligned_cols=49 Identities=31% Similarity=0.802 Sum_probs=37.1
Q ss_pred CcccccCCCCCCCCCEEEecCCCceeccccccCC--CCCCCccccccchhhc
Q 004708 324 RSCDICRRSETILNPILICSGCKVAVHLDCYRNA--KESTGPWYCELCEELL 373 (734)
Q Consensus 324 ~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~--~ip~g~WlCd~C~~~~ 373 (734)
..|-.|+. -.+.+.+++|++|.+++|-+|.-.. .++.++|+|..|..-.
T Consensus 69 rvCe~c~~-~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 69 RVCEACGT-TGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCR 119 (694)
T ss_pred eeeeeccc-cCCcccccccccccccccccccCCccccccCcccccHHHHhhh
Confidence 44445542 2346789999999999999997654 5789999999988753
No 30
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=88.31 E-value=0.35 Score=38.31 Aligned_cols=30 Identities=27% Similarity=0.835 Sum_probs=25.7
Q ss_pred cccccCCC--CceeeecCCCCCCcccchhccccC
Q 004708 447 VCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 478 (734)
Q Consensus 447 ~CsiC~~~--~GA~IqCs~~~C~~sFH~tCA~~a 478 (734)
+|.+|++. .+.+|+|. .|..+||..|....
T Consensus 1 ~C~vC~~~~~~~~~i~C~--~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD--SCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS--TTSCEEETTTSTSS
T ss_pred eCcCCCCcCCCCCeEEcC--CCChhhCcccCCCC
Confidence 47888873 68899999 99999999999765
No 31
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.70 E-value=0.78 Score=49.53 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=38.8
Q ss_pred CCcccccCCCCC-----CCCCEEEecCCCceeccccccCC-----CCCCCccccccchh
Q 004708 323 PRSCDICRRSET-----ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCEE 371 (734)
Q Consensus 323 ~~~CsVC~~~E~-----~~N~IV~Cd~C~iaVHq~CYGv~-----~ip~g~WlCd~C~~ 371 (734)
...|.+|.+... .-|-+|.|.-|..+.|-+|.... .+....|-|-.|..
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l 316 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL 316 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh
Confidence 467999998542 24789999999999999998754 23467899988874
No 32
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=82.05 E-value=1 Score=42.39 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=36.7
Q ss_pred CcccccCCCC-CCCCCEEEecCCCceeccccccCCCCCCCccccccchhhc
Q 004708 324 RSCDICRRSE-TILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL 373 (734)
Q Consensus 324 ~~CsVC~~~E-~~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~~ 373 (734)
..|..|...- ...|.-..|..|...|-..|-. ....+..|+|..|....
T Consensus 55 ~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~-~~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 55 RHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGV-YSKKEPIWLCKVCQKQR 104 (118)
T ss_dssp SB-TTTS-BCSCTSTTCEEETTTTEEEETTSEE-ETSSSCCEEEHHHHHHH
T ss_pred cchhhhCCcccccCCCCCcCCcCCccccCccCC-cCCCCCCEEChhhHHHH
Confidence 5799998743 3467779999999999999944 43457799999999853
No 33
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=81.05 E-value=0.36 Score=62.02 Aligned_cols=51 Identities=31% Similarity=0.762 Sum_probs=43.1
Q ss_pred CCCcccccCCCCCCCCCEEEecCCCceeccccccCC--CCCCCccccccchhhc
Q 004708 322 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA--KESTGPWYCELCEELL 373 (734)
Q Consensus 322 ~~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~--~ip~g~WlCd~C~~~~ 373 (734)
....|-||+.... .+.|+.|+.|.-.||..|..+. .+|.+.|+|..|....
T Consensus 1107 ~~~~c~~cr~k~~-~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQ-DEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhccc-chhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4678999998432 4789999999999999999864 5678999999999865
No 34
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=78.86 E-value=0.92 Score=48.75 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=26.0
Q ss_pred CccccccCCCCceeeecCCCCCC-cccchhcc
Q 004708 445 IDVCCICRHKHGICIKCNYGNCQ-TTFHPTCA 475 (734)
Q Consensus 445 k~~CsiC~~~~GA~IqCs~~~C~-~sFH~tCA 475 (734)
...|.-+....|.+|.|...+|. .|||..|.
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV 250 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV 250 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEecc
Confidence 45665555569999999999999 99999996
No 35
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=77.46 E-value=2.4 Score=33.83 Aligned_cols=35 Identities=26% Similarity=0.592 Sum_probs=26.8
Q ss_pred CCcccccCCCC-CCCCCEEEecCCCceeccccccCC
Q 004708 323 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYRNA 357 (734)
Q Consensus 323 ~~~CsVC~~~E-~~~N~IV~Cd~C~iaVHq~CYGv~ 357 (734)
...|++|...= +...+-+.|..|++.||..|....
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 46899999853 245789999999999999998754
No 36
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=73.86 E-value=1.4 Score=31.81 Aligned_cols=28 Identities=29% Similarity=0.710 Sum_probs=12.3
Q ss_pred cccccCCCCCCCCCEEEecCCCceecccc
Q 004708 325 SCDICRRSETILNPILICSGCKVAVHLDC 353 (734)
Q Consensus 325 ~CsVC~~~E~~~N~IV~Cd~C~iaVHq~C 353 (734)
.|.+|...-. ++....|..|+..+|..|
T Consensus 2 ~C~~C~~~~~-~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID-GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS-----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC-CCceEECccCCCccChhc
Confidence 5999997533 247889999999999988
No 37
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=72.64 E-value=2.1 Score=33.33 Aligned_cols=35 Identities=40% Similarity=0.790 Sum_probs=27.3
Q ss_pred CCcccccCCCCC-CCCCEEEecCCCceeccccccCC
Q 004708 323 PRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNA 357 (734)
Q Consensus 323 ~~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~ 357 (734)
...|.+|...-. ...+-+.|+.|++.||..|....
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence 467999997432 13578899999999999998643
No 38
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=72.57 E-value=3.3 Score=51.79 Aligned_cols=113 Identities=23% Similarity=0.455 Sum_probs=73.2
Q ss_pred CCCCCCCcccccCCCCCCCCCEEEecCCCceeccccccCCC--CCCCccccccchhhccCCCCCCCCCCccCCCCccccc
Q 004708 318 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAK--ESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAEC 395 (734)
Q Consensus 318 ~~ke~~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~~--ip~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C 395 (734)
+...-+..|-+|.+ .+.++.|..|..-||..|.-.+. .|...|-|..|..-.- |+ .+.|
T Consensus 339 ~~~~~ddhcrf~~d----~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkv---------ng------vvd~ 399 (1414)
T KOG1473|consen 339 GEIEYDDHCRFCHD----LGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKV---------NG------VVDC 399 (1414)
T ss_pred cceeecccccccCc----ccceeecccCCceEEeeecCCccccCCCccchhhhhhhhcc---------Cc------cccc
Confidence 44445678999988 68999999999999999986553 5678999999987532 11 4456
Q ss_pred ccCCCCCCCcccccCCceeeeecccccceeeeccCccccccccccccC----CCccccccCCCCceeeecCCCCCCcccc
Q 004708 396 SLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPK----GIDVCCICRHKHGICIKCNYGNCQTTFH 471 (734)
Q Consensus 396 ~LCp~~gGaLK~T~~g~WVHV~CALW~PEv~f~n~~l~pV~GIe~I~r----~k~~CsiC~~~~GA~IqCs~~~C~~sFH 471 (734)
+|=+.+.+...+.. || |.+..-+ ...+|.||+. .|.. -|.++.|.+.||
T Consensus 400 vl~~~K~~~~iR~~------------------------~i-G~dr~gr~ywfi~rrl~Ie~~-det~-l~yysT~pqly~ 452 (1414)
T KOG1473|consen 400 VLPPSKNVDSIRHT------------------------PI-GRDRYGRKYWFISRRLRIEGM-DETL-LWYYSTCPQLYH 452 (1414)
T ss_pred ccChhhcccceecc------------------------CC-CcCccccchhceeeeeEEecC-CCcE-EEEecCcHHHHH
Confidence 66555443332111 10 1111111 1367888886 3444 466678999999
Q ss_pred h-hccc
Q 004708 472 P-TCAR 476 (734)
Q Consensus 472 ~-tCA~ 476 (734)
. .|.=
T Consensus 453 ll~cLd 458 (1414)
T KOG1473|consen 453 LLRCLD 458 (1414)
T ss_pred HHHHhc
Confidence 8 7765
No 39
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=69.86 E-value=2.2 Score=49.98 Aligned_cols=145 Identities=23% Similarity=0.394 Sum_probs=71.3
Q ss_pred CCCcccccCCCC--C----CCCCEEEe-cCCC------------ceeccccccCCC------------CCCCccccccch
Q 004708 322 HPRSCDICRRSE--T----ILNPILIC-SGCK------------VAVHLDCYRNAK------------ESTGPWYCELCE 370 (734)
Q Consensus 322 ~~~~CsVC~~~E--~----~~N~IV~C-d~C~------------iaVHq~CYGv~~------------ip~g~WlCd~C~ 370 (734)
+...|.+|.... . ..+.-++| ++|. ..+|+.|..... .....-+|+.|.
T Consensus 41 ~cf~c~~cg~~la~~gff~k~~~~~ygt~~c~~~~~gevvsa~gktyh~~cf~cs~ck~pf~~g~~vt~~gk~~~c~~c~ 120 (670)
T KOG1044|consen 41 NCFQCKKCGRNLAEGGFFTKPENRLYGTDDCRAFVEGEVVSTLGKTYHPKCFSCSTCKSPFKSGDKVTFSGKECLCQTCS 120 (670)
T ss_pred eeeeccccCCCcccccceecccceeecccchhhhccceeEecccceeccccceecccCCCCCCCCeeeecchhhhhhhhc
Confidence 356788888632 1 22333333 3453 456888874321 112357888888
Q ss_pred hhccCCCCCCCCCCccCCCCcccccccCCC---CCCCcccccCCceeeeecccccceeeeccCcccccccccccc-----
Q 004708 371 ELLSSRSSGAPSVNFWEKPYFVAECSLCGG---TTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFP----- 442 (734)
Q Consensus 371 ~~~~~~~s~~~~vN~~~~p~~~~~C~LCp~---~gGaLK~T~~g~WVHV~CALW~PEv~f~n~~l~pV~GIe~I~----- 442 (734)
...... ..+ ......|+-|.. .|++|.- -+-+| ||.|..-..--.+.++.+..-.|+--..
T Consensus 121 ~~~~~~--------p~~-~~~ps~cagc~~~lk~gq~lla-ld~qw-hv~cfkc~~c~~vL~gey~skdg~pyce~dy~~ 189 (670)
T KOG1044|consen 121 QPMPVS--------PAE-SYGPSTCAGCGEELKNGQALLA-LDKQW-HVSCFKCKSCSAVLNGEYMSKDGVPYCEKDYQA 189 (670)
T ss_pred CcccCC--------ccc-ccCCccccchhhhhhccceeee-eccce-eeeeeehhhhcccccceeeccCCCcchhhhhhh
Confidence 642211 000 123568888876 3444433 34466 5666433221122222111111211111
Q ss_pred CCCccccccCCC-CceeeecCCCCCCcccchhccccCCce
Q 004708 443 KGIDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFY 481 (734)
Q Consensus 443 r~k~~CsiC~~~-~GA~IqCs~~~C~~sFH~tCA~~aG~~ 481 (734)
....+|..|.+- .|..++=. + ..|||+||+-..+-
T Consensus 190 ~fgvkc~~c~~fisgkvLqag--~--kh~HPtCARCsRCg 225 (670)
T KOG1044|consen 190 KFGVKCEECEKFISGKVLQAG--D--KHFHPTCARCSRCG 225 (670)
T ss_pred hcCeehHHhhhhhhhhhhhcc--C--cccCcchhhhhhhc
Confidence 124677777763 45555433 3 78999999887553
No 40
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=69.73 E-value=2.8 Score=41.63 Aligned_cols=27 Identities=37% Similarity=0.808 Sum_probs=22.4
Q ss_pred eeccccccCC--CCCCCccccccchhhcc
Q 004708 348 AVHLDCYRNA--KESTGPWYCELCEELLS 374 (734)
Q Consensus 348 aVHq~CYGv~--~ip~g~WlCd~C~~~~~ 374 (734)
.+|..|...+ .+|+|+|+|..|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 3799999865 57899999999998644
No 41
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=69.69 E-value=4.3 Score=29.50 Aligned_cols=27 Identities=37% Similarity=0.849 Sum_probs=21.7
Q ss_pred cccccCCCCCCCCC-EEEecCCCceecccc
Q 004708 325 SCDICRRSETILNP-ILICSGCKVAVHLDC 353 (734)
Q Consensus 325 ~CsVC~~~E~~~N~-IV~Cd~C~iaVHq~C 353 (734)
.|.||++.- .+. ...|+.|+..+|..|
T Consensus 2 ~C~~C~~~~--~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI--DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc--CCCEeEEeCCCCCeEcCcc
Confidence 599998732 233 889999999999988
No 42
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=68.40 E-value=2 Score=32.98 Aligned_cols=34 Identities=38% Similarity=0.621 Sum_probs=25.7
Q ss_pred CCcccccCCCCCCCCCEEEecCCCceeccccccC
Q 004708 323 PRSCDICRRSETILNPILICSGCKVAVHLDCYRN 356 (734)
Q Consensus 323 ~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv 356 (734)
...|.+|...-....+-+.|..|++.||..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 4579999975321115789999999999999754
No 43
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=67.40 E-value=3.1 Score=49.48 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=34.1
Q ss_pred CcccccCCCCC-CCCCEEEecCCCceeccccccCCC---CCCCccccccchh
Q 004708 324 RSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK---ESTGPWYCELCEE 371 (734)
Q Consensus 324 ~~CsVC~~~E~-~~N~IV~Cd~C~iaVHq~CYGv~~---ip~g~WlCd~C~~ 371 (734)
.-|-||..... ..+.++.|..|+...|.+|.-+.. +-.+-|-|..|..
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 34666654332 368899999999999999987431 1234499999885
No 44
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=64.23 E-value=5.4 Score=45.76 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=24.9
Q ss_pred cccccCCCCCCCC--CEEEecCCCceeccccc
Q 004708 325 SCDICRRSETILN--PILICSGCKVAVHLDCY 354 (734)
Q Consensus 325 ~CsVC~~~E~~~N--~IV~Cd~C~iaVHq~CY 354 (734)
.|.||..++.+.| .-|.||-|+-..|..|-
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCA 161 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCA 161 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhh
Confidence 5889988876444 58999999999999994
No 45
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=63.06 E-value=4.1 Score=43.62 Aligned_cols=32 Identities=28% Similarity=0.736 Sum_probs=25.7
Q ss_pred ccccccCC-CCceeeecCCCCCC-cccchhccccC
Q 004708 446 DVCCICRH-KHGICIKCNYGNCQ-TTFHPTCARSA 478 (734)
Q Consensus 446 ~~CsiC~~-~~GA~IqCs~~~C~-~sFH~tCA~~a 478 (734)
+.| +|++ ..|-+|.|...+|. .|||..|.=..
T Consensus 222 lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk 255 (271)
T COG5034 222 LYC-FCQQVSYGQMVACDNANCKREWFHLECVGLK 255 (271)
T ss_pred eEE-EecccccccceecCCCCCchhheeccccccC
Confidence 555 5665 68999999999996 79999997433
No 46
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=61.15 E-value=7.7 Score=39.96 Aligned_cols=44 Identities=25% Similarity=0.727 Sum_probs=34.9
Q ss_pred CCCcccccCCCCC----CCCCEEEecCCCceeccccccCCCCCCCccccccchhh
Q 004708 322 HPRSCDICRRSET----ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 372 (734)
Q Consensus 322 ~~~~CsVC~~~E~----~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~ 372 (734)
++..|-+|.+.+. ..+..+.|..|+..+|..|+.-. -|.+|.-.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~~-------~CpkC~R~ 198 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRKK-------SCPKCARR 198 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCCC-------CCCCcHhH
Confidence 3568999998663 34589999999999999999831 29999864
No 47
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=59.63 E-value=5.5 Score=45.43 Aligned_cols=118 Identities=22% Similarity=0.438 Sum_probs=66.2
Q ss_pred CCccccccchhhccCCCCCCCCCCccCCCCcccccccCCCCC-CCccc-----ccCCceeeeecccccceeeeccCcccc
Q 004708 361 TGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTT-GAFRK-----SANGQWVHAFCAEWVFESTFRRGQVNP 434 (734)
Q Consensus 361 ~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C~LCp~~g-GaLK~-----T~~g~WVHV~CALW~PEv~f~n~~l~p 434 (734)
++.-+|+.|-... .-+|..|+..- ..+.+ .--+-|+=|+|+--+.++-|.-+.-+.
T Consensus 321 ~~k~~CE~cyq~t------------------lekC~~Cg~~I~d~iLrA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~ 382 (468)
T KOG1701|consen 321 DGKPYCEGCYQDT------------------LEKCNKCGEPIMDRILRALGKAYHPGCFTCVVCARCLDGIPFTVDSQNN 382 (468)
T ss_pred CCcccchHHHHHH------------------HHHHhhhhhHHHHHHHHhcccccCCCceEEEEeccccCCccccccCCCc
Confidence 5677788877642 34788887621 11111 123455556666666677665332223
Q ss_pred ccccccccC-CCccccccCCC----Cc----eeeecCCCCCCcccchhccccCCceEEEe--eCC-C--ceeeeEeCCCC
Q 004708 435 VAGMEAFPK-GIDVCCICRHK----HG----ICIKCNYGNCQTTFHPTCARSAGFYLNVK--STG-G--NFQHKAYCEKH 500 (734)
Q Consensus 435 V~GIe~I~r-~k~~CsiC~~~----~G----A~IqCs~~~C~~sFH~tCA~~aG~~m~~k--~~~-g--~~~~~~yC~kH 500 (734)
|.=|.+..+ .--+|++|+.. .| .-|-|. .+.||+.|-+-..+-|... .++ + -+...++|+.=
T Consensus 383 v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvam----dr~fHv~CY~CEDCg~~LS~e~e~qgCyPld~HllCk~C 458 (468)
T KOG1701|consen 383 VYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAM----DRDFHVNCYKCEDCGLLLSSEEEGQGCYPLDGHLLCKTC 458 (468)
T ss_pred eeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEc----cccccccceehhhcCccccccCCCCcceeccCceeechh
Confidence 333334333 36899999974 12 223344 4789999998876655543 221 2 13457888754
No 48
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=59.35 E-value=12 Score=45.58 Aligned_cols=50 Identities=24% Similarity=0.502 Sum_probs=35.0
Q ss_pred CccccccCCC--CceeeecCCCCCCcc-cchhccccCCceEEEeeCCCceeeeEeCCCCChhh
Q 004708 445 IDVCCICRHK--HGICIKCNYGNCQTT-FHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQ 504 (734)
Q Consensus 445 k~~CsiC~~~--~GA~IqCs~~~C~~s-FH~tCA~~aG~~m~~k~~~g~~~~~~yC~kHs~~q 504 (734)
...|.||... .-.+|-|+ .|... ||..|.-..-+.+-+ -..||..-...+
T Consensus 215 ~~~C~IC~~~DpEdVLLLCD--sCN~~~YH~YCLDPdl~eiP~--------~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCD--SCNKVYYHVYCLDPDLSESPV--------NEWYCTNCSLLE 267 (1134)
T ss_pred cccceeeccCChHHhheeec--ccccceeeccccCcccccccc--------cceecCcchhhh
Confidence 4789999985 56788999 99987 999998654322211 245887665543
No 49
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=54.04 E-value=6.9 Score=28.27 Aligned_cols=27 Identities=26% Similarity=0.717 Sum_probs=12.1
Q ss_pred cccccCCCCc--eeeecCCCCCCcccchhcc
Q 004708 447 VCCICRHKHG--ICIKCNYGNCQTTFHPTCA 475 (734)
Q Consensus 447 ~CsiC~~~~G--A~IqCs~~~C~~sFH~tCA 475 (734)
.|.+|+...+ ..-.|. .|...+|..||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS--ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T--TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc--cCCCccChhcC
Confidence 5889998754 466798 99999999997
No 50
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.75 E-value=63 Score=28.18 Aligned_cols=60 Identities=30% Similarity=0.258 Sum_probs=46.3
Q ss_pred cchhHHHHHHHHH--HhhHHHhhhhhHHHHHHHHHhhhHHHHHhhccchhHHHHhHHHHHHHHHHHcCC
Q 004708 163 EVEGEIIYFQHRL--LGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGR 229 (734)
Q Consensus 163 e~e~E~~~~q~~L--~~~~~~~~~~~~~lv~ev~k~~~~e~~~~~~r~w~~~~~nq~L~e~reakkq~~ 229 (734)
.+|.|+..||.+| +.+-. -.++ ...+.|..|.+.|-.+.-+....+.-|++..++.++.-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~---~~~~----~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKN---SVHE----IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999887 33222 1133 56788899999999888889999999999999988753
No 51
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=47.11 E-value=9.7 Score=32.90 Aligned_cols=32 Identities=28% Similarity=0.600 Sum_probs=12.8
Q ss_pred CcccccCCCCCC--CCCEEEec--CCCceecccccc
Q 004708 324 RSCDICRRSETI--LNPILICS--GCKVAVHLDCYR 355 (734)
Q Consensus 324 ~~CsVC~~~E~~--~N~IV~Cd--~C~iaVHq~CYG 355 (734)
..|.||...... .-..+.|+ .|+..+|..|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 579999975432 23578998 899999999985
No 52
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=46.96 E-value=15 Score=26.64 Aligned_cols=27 Identities=41% Similarity=0.968 Sum_probs=21.5
Q ss_pred cccccCCC-Cce-eeecCCCCCCcccchhcc
Q 004708 447 VCCICRHK-HGI-CIKCNYGNCQTTFHPTCA 475 (734)
Q Consensus 447 ~CsiC~~~-~GA-~IqCs~~~C~~sFH~tCA 475 (734)
.|.+|++. .|- .-.|. .|...+|+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~--~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCS--ECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeC--CCCCeEcCccC
Confidence 58899886 455 56796 88899999997
No 53
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=46.63 E-value=12 Score=47.21 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=39.6
Q ss_pred CCCcccccCCCCC---CCCCEEEecCCCceeccccccCCCCCCCccccccchhh
Q 004708 322 HPRSCDICRRSET---ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 372 (734)
Q Consensus 322 ~~~~CsVC~~~E~---~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~ 372 (734)
+...|.||++.-. +++..|-|.-|+..|-..||- .+..+|.=-|..|...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCc
Confidence 3568999998532 467899999999999999994 3455788889999763
No 54
>PLN02400 cellulose synthase
Probab=46.36 E-value=15 Score=46.52 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=39.6
Q ss_pred CCCcccccCCCC--C-CCCCEEEecCCCceeccccccCCCCCCCccccccchhh
Q 004708 322 HPRSCDICRRSE--T-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 372 (734)
Q Consensus 322 ~~~~CsVC~~~E--~-~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~ 372 (734)
+...|.||++.- + +++..|-|..|...|-..||-- +..+|.=.|..|.-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCc
Confidence 346899999853 2 4678999999999999999943 355788889999764
No 55
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=44.60 E-value=3.5 Score=36.82 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=23.7
Q ss_pred CCCcccccCCCCC---CCCCEEEecCCCceeccccccCCCCCCCccccccchh
Q 004708 322 HPRSCDICRRSET---ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 371 (734)
Q Consensus 322 ~~~~CsVC~~~E~---~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~ 371 (734)
+...|.||++.-. +++.+|-|..|+..|-..||-.. ..+|.-.|..|..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE-rkeg~q~CpqCkt 59 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE-RKEGNQVCPQCKT 59 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH-HHTS-SB-TTT--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH-hhcCcccccccCC
Confidence 3578999998532 46789999999999999999753 3466778888874
No 56
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=44.25 E-value=21 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.656 Sum_probs=20.8
Q ss_pred CCcccccCCCCCCCCCEEEecCCCceeccccc
Q 004708 323 PRSCDICRRSETILNPILICSGCKVAVHLDCY 354 (734)
Q Consensus 323 ~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CY 354 (734)
...|.||...= +|..+.---|+-.||..|+
T Consensus 78 ~~~C~vC~k~l--~~~~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 78 STKCSVCGKPL--GNSVFVVFPCGHVVHYSCI 107 (109)
T ss_pred CCCccCcCCcC--CCceEEEeCCCeEEecccc
Confidence 46799999843 3343333456799999996
No 57
>PLN02436 cellulose synthase A
Probab=41.75 E-value=17 Score=45.95 Aligned_cols=49 Identities=27% Similarity=0.626 Sum_probs=38.8
Q ss_pred CCcccccCCCC--C-CCCCEEEecCCCceeccccccCCCCCCCccccccchhh
Q 004708 323 PRSCDICRRSE--T-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 372 (734)
Q Consensus 323 ~~~CsVC~~~E--~-~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~ 372 (734)
...|.||++.- + +++..|-|.-|+..|...||- ....+|.=.|..|...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCKTR 87 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCc
Confidence 46899999853 2 466799999999999999994 3345778888888763
No 58
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.15 E-value=11 Score=37.09 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=36.0
Q ss_pred CCcccccCCCCCCCCCEEEecCCCceeccccccCCCCC--CCccccccchhh
Q 004708 323 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES--TGPWYCELCEEL 372 (734)
Q Consensus 323 ~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~~ip--~g~WlCd~C~~~ 372 (734)
+..|.||......++.=-.|.-|++.+...|-|-.... ...|.|.+|...
T Consensus 65 datC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 65 DATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 57899999754444455578888888888887755443 346999999864
No 59
>PLN02195 cellulose synthase A
Probab=39.65 E-value=19 Score=45.11 Aligned_cols=49 Identities=16% Similarity=0.376 Sum_probs=38.8
Q ss_pred CCcccccCCCCC---CCCCEEEecCCCceeccccccCCCCCCCccccccchhh
Q 004708 323 PRSCDICRRSET---ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 372 (734)
Q Consensus 323 ~~~CsVC~~~E~---~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~ 372 (734)
...|.||++.-. +++..|-|.-|+..|...||- .+..+|.=-|..|...
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~ 57 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGP 57 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCc
Confidence 458999998432 467899999999999999994 3355778888888754
No 60
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=38.47 E-value=12 Score=44.57 Aligned_cols=46 Identities=26% Similarity=0.655 Sum_probs=37.6
Q ss_pred CCcccccCCCCCCCCCEEEecCCCceeccccccCCCCC---CCccccccchhh
Q 004708 323 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 372 (734)
Q Consensus 323 ~~~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~~ip---~g~WlCd~C~~~ 372 (734)
...|.+|.. +..++.|+.|..++|+.|-+....| .+.|.|..|...
T Consensus 47 ~ts~~~~~~----~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKS----GGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhh----cCCccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 578999987 4678899999999999998876444 467999988874
No 61
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=38.04 E-value=16 Score=28.87 Aligned_cols=30 Identities=20% Similarity=0.639 Sum_probs=16.3
Q ss_pred ccccCCCCceeeecCCCCCCcccchhcccc
Q 004708 448 CCICRHKHGICIKCNYGNCQTTFHPTCARS 477 (734)
Q Consensus 448 CsiC~~~~GA~IqCs~~~C~~sFH~tCA~~ 477 (734)
|.+|+.-.-.-+.|...+|...+|..|+..
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~ 30 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKK 30 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHH
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHH
Confidence 677887544556799999999999999864
No 62
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.88 E-value=22 Score=44.89 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=39.6
Q ss_pred CCCcccccCCCCC---CCCCEEEecCCCceeccccccCCCCCCCccccccchhh
Q 004708 322 HPRSCDICRRSET---ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 372 (734)
Q Consensus 322 ~~~~CsVC~~~E~---~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~ 372 (734)
....|.||++.-. +++..|-|.-|+..|...||- ....+|.=.|..|...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEGNQCCPQCNTR 66 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCc
Confidence 3568999998532 466899999999999999994 3455788889999764
No 63
>PLN02189 cellulose synthase
Probab=36.33 E-value=23 Score=44.75 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=38.8
Q ss_pred CCcccccCCCCC---CCCCEEEecCCCceeccccccCCCCCCCccccccchhh
Q 004708 323 PRSCDICRRSET---ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 372 (734)
Q Consensus 323 ~~~CsVC~~~E~---~~N~IV~Cd~C~iaVHq~CYGv~~ip~g~WlCd~C~~~ 372 (734)
...|.||++.-. +++..|-|.-|+..|...||- ....+|.=-|..|...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg~q~CpqCkt~ 85 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREGTQNCPQCKTR 85 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCc
Confidence 468999998532 466799999999999999994 3355788889999763
No 64
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=35.92 E-value=21 Score=41.11 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=37.3
Q ss_pred cccCCCCCCCCCEEEecCCCceeccccccCCCCCC-Cccccccchhhc
Q 004708 327 DICRRSETILNPILICSGCKVAVHLDCYRNAKEST-GPWYCELCEELL 373 (734)
Q Consensus 327 sVC~~~E~~~N~IV~Cd~C~iaVHq~CYGv~~ip~-g~WlCd~C~~~~ 373 (734)
++|...+...+.++.|+-|..--|..|+|+..... ..+.|..|....
T Consensus 89 c~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 89 CDCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRN 136 (508)
T ss_pred cccccccCCCceeeCCcccCcccCceeeeecCCCCchhceeeeecccc
Confidence 46776443367899999999999999999876544 678899998753
No 65
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=35.22 E-value=28 Score=32.62 Aligned_cols=62 Identities=24% Similarity=0.581 Sum_probs=41.0
Q ss_pred CCCCCcccccCCCCCCCCCEEEe------cCCCceeccccccCC----------CCCCCccccccchhhccCCCCCCCCC
Q 004708 320 KEHPRSCDICRRSETILNPILIC------SGCKVAVHLDCYRNA----------KESTGPWYCELCEELLSSRSSGAPSV 383 (734)
Q Consensus 320 ke~~~~CsVC~~~E~~~N~IV~C------d~C~iaVHq~CYGv~----------~ip~g~WlCd~C~~~~~~~~s~~~~v 383 (734)
..+...|-.|+.... +..+.| ..|...-=+.||+-. ...+..|.|..|..
T Consensus 4 ~~~g~~CHqCrqKt~--~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg------------ 69 (105)
T PF10497_consen 4 SVNGKTCHQCRQKTL--DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG------------ 69 (105)
T ss_pred CCCCCCchhhcCCCC--CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC------------
Confidence 345678999998543 555678 778333334555421 12367899999997
Q ss_pred CccCCCCcccccccCCCCCC
Q 004708 384 NFWEKPYFVAECSLCGGTTG 403 (734)
Q Consensus 384 N~~~~p~~~~~C~LCp~~gG 403 (734)
.-.|..|.+..|
T Consensus 70 --------iCnCs~Crrk~g 81 (105)
T PF10497_consen 70 --------ICNCSFCRRKRG 81 (105)
T ss_pred --------eeCCHhhhccCC
Confidence 457899988665
No 66
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=34.35 E-value=28 Score=29.24 Aligned_cols=37 Identities=27% Similarity=0.566 Sum_probs=31.0
Q ss_pred CccccccCCC---CceeeecCCCCCCcccchhccccCCceEE
Q 004708 445 IDVCCICRHK---HGICIKCNYGNCQTTFHPTCARSAGFYLN 483 (734)
Q Consensus 445 k~~CsiC~~~---~GA~IqCs~~~C~~sFH~tCA~~aG~~m~ 483 (734)
..+|.+|+.+ .+..|.|- .|.+-||-.|....|--+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp--~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCP--ECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECC--CCCCcccHHHHhhCCceEe
Confidence 4689999985 57888999 9999999999988876553
No 67
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=32.62 E-value=9.8 Score=42.97 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=66.0
Q ss_pred cccccccCCC----CCCCcccccCCceeeeeccccccee---eeccCcc--c---ccccccc--ccC-CCccccccCCCC
Q 004708 391 FVAECSLCGG----TTGAFRKSANGQWVHAFCAEWVFES---TFRRGQV--N---PVAGMEA--FPK-GIDVCCICRHKH 455 (734)
Q Consensus 391 ~~~~C~LCp~----~gGaLK~T~~g~WVHV~CALW~PEv---~f~n~~l--~---pV~GIe~--I~r-~k~~CsiC~~~~ 455 (734)
+...|.+|.. -+-.+.......|+|..|.++...- .+....+ . .|+.++. ... ....|.+|+..
T Consensus 122 ~~~~cg~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~c~~~- 200 (375)
T KOG1084|consen 122 KHLKCGLCRARVRKLGSQLYDEYPSFEARMGCILIQNSRNGPAPEARLLCFSKSFLIESHEKVEDKCSEALNCKLCHEP- 200 (375)
T ss_pred cccccccchhHHhhhcccccchhhhhhhccchhHHhhccCCCCcccccchhhhhhhHHhhhhhhhhcccccccccccCC-
Confidence 4778888882 2222333345589999999887542 1111001 1 1122222 112 25889999984
Q ss_pred ceeee----cC-CCCCCcccchhccccCCceEEEeeCCCceeeeEeCCCCChhhH
Q 004708 456 GICIK----CN-YGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQK 505 (734)
Q Consensus 456 GA~Iq----Cs-~~~C~~sFH~tCA~~aG~~m~~k~~~g~~~~~~yC~kHs~~q~ 505 (734)
|+.+. |. ...|...+|..||+..+..+.- .+-...+..||..|.+.-.
T Consensus 201 ~a~ts~~~~~~~~~~c~~~~e~~~~l~~~~~~~d--~~~~~~~h~~c~~~~~~~~ 253 (375)
T KOG1084|consen 201 GAPTSQFDPCDIDDDCNRSREFFCALSPKATIPD--IGFELWYHRYCALWAPNVH 253 (375)
T ss_pred CCcccccCCcchhhhhhhhhhhhhhhcCCCcCCc--cchhHHHHHHHHhcCCcce
Confidence 55544 55 4589999999999987766532 1112246789999997544
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=32.41 E-value=21 Score=31.80 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=18.9
Q ss_pred CccccccCCCCceeeecCCCCCCcccchhccc
Q 004708 445 IDVCCICRHKHGICIKCNYGNCQTTFHPTCAR 476 (734)
Q Consensus 445 k~~CsiC~~~~GA~IqCs~~~C~~sFH~tCA~ 476 (734)
...|.+|+++-|... .....|...||..|+.
T Consensus 78 ~~~C~vC~k~l~~~~-f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSV-FVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCce-EEEeCCCeEEeccccc
Confidence 366888888754322 1112344788888875
No 69
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=32.40 E-value=1.1e+02 Score=38.28 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=21.0
Q ss_pred CCCCCcccccCCCCC-C----CCCEEEecCCCce
Q 004708 320 KEHPRSCDICRRSET-I----LNPILICSGCKVA 348 (734)
Q Consensus 320 ke~~~~CsVC~~~E~-~----~N~IV~Cd~C~ia 348 (734)
.+....|+||+++.. . .+...|+.+|++.
T Consensus 465 ee~gl~C~ICrEGy~~~p~~~lGiY~f~kr~~l~ 498 (802)
T PF13764_consen 465 EEDGLTCCICREGYKFRPDEVLGIYAFSKRVNLE 498 (802)
T ss_pred ccCCCeEEEcCCccccCCccceeeEEEeecccch
Confidence 467789999998642 2 3456788889883
No 70
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=29.59 E-value=30 Score=31.60 Aligned_cols=31 Identities=35% Similarity=0.738 Sum_probs=26.5
Q ss_pred CCCcccccCCCCCCCCCEEEecC--CCceecccccc
Q 004708 322 HPRSCDICRRSETILNPILICSG--CKVAVHLDCYR 355 (734)
Q Consensus 322 ~~~~CsVC~~~E~~~N~IV~Cd~--C~iaVHq~CYG 355 (734)
....|.||... .+..|.|.. |...+|..|.-
T Consensus 54 ~~~~C~iC~~~---~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGKS---GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCCC---CceeEEcCCCCCCcCCCHHHHH
Confidence 35799999985 467999998 99999999963
No 71
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=29.46 E-value=30 Score=29.94 Aligned_cols=33 Identities=27% Similarity=0.535 Sum_probs=14.0
Q ss_pred ccccccCCC---Cc--eeeecCCCCCCcccchhccccC
Q 004708 446 DVCCICRHK---HG--ICIKCNYGNCQTTFHPTCARSA 478 (734)
Q Consensus 446 ~~CsiC~~~---~G--A~IqCs~~~C~~sFH~tCA~~a 478 (734)
..|.||... .+ ..+.|....|...||..|....
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHH
Confidence 568889863 22 3367999999999999998653
No 72
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=29.23 E-value=21 Score=27.41 Aligned_cols=30 Identities=20% Similarity=0.458 Sum_probs=22.7
Q ss_pred cccccCCCCCCCCCEEEecCCCceecccccc
Q 004708 325 SCDICRRSETILNPILICSGCKVAVHLDCYR 355 (734)
Q Consensus 325 ~CsVC~~~E~~~N~IV~Cd~C~iaVHq~CYG 355 (734)
.|.||.+.-...+.++... |+=.+|..|..
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~ 31 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIK 31 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHH
Confidence 5999998533356666666 99999999965
No 73
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=29.14 E-value=18 Score=32.74 Aligned_cols=32 Identities=44% Similarity=1.163 Sum_probs=23.4
Q ss_pred ccccccCCC-CceeeecCC------------CCCCcccchhcccc
Q 004708 446 DVCCICRHK-HGICIKCNY------------GNCQTTFHPTCARS 477 (734)
Q Consensus 446 ~~CsiC~~~-~GA~IqCs~------------~~C~~sFH~tCA~~ 477 (734)
..|.||+.. .|.|+.|.. +.|..+||..|-.+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~r 65 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYR 65 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHH
Confidence 457777754 567777765 46889999999865
No 74
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=23.48 E-value=40 Score=24.22 Aligned_cols=25 Identities=28% Similarity=0.813 Sum_probs=16.4
Q ss_pred CCccccccchhhccCCCCCCCCCCccCCCCcccccccCCC
Q 004708 361 TGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGG 400 (734)
Q Consensus 361 ~g~WlCd~C~~~~~~~~s~~~~vN~~~~p~~~~~C~LCp~ 400 (734)
.|.|.|..|.+.... ....|..|..
T Consensus 2 ~g~W~C~~C~~~N~~---------------~~~~C~~C~~ 26 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPA---------------SRSKCVACGA 26 (30)
T ss_dssp SSSEEETTTTEEEES---------------SSSB-TTT--
T ss_pred CcCccCCCCcCCchH---------------HhhhhhCcCC
Confidence 579999999985322 2568998875
No 75
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.34 E-value=6.5e+02 Score=26.88 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHHcC
Q 004708 214 VNQYLCELREAKKQG 228 (734)
Q Consensus 214 ~nq~L~e~reakkq~ 228 (734)
.+|.|+.+.+|.++.
T Consensus 111 A~qKLksi~~A~krp 125 (272)
T KOG4552|consen 111 ANQKLKSIKEAEKRP 125 (272)
T ss_pred HHHHHHHHHHHhcCC
Confidence 799999999998886
No 76
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=23.02 E-value=42 Score=25.58 Aligned_cols=32 Identities=28% Similarity=0.794 Sum_probs=25.5
Q ss_pred ccccccCCCCc---eeeecCCCCCCcccchhccccCC
Q 004708 446 DVCCICRHKHG---ICIKCNYGNCQTTFHPTCARSAG 479 (734)
Q Consensus 446 ~~CsiC~~~~G---A~IqCs~~~C~~sFH~tCA~~aG 479 (734)
..|.+|+.... ..+.|. .|....|..|+....
T Consensus 12 ~~C~~C~~~i~~~~~~~~C~--~C~~~~H~~C~~~v~ 46 (49)
T smart00109 12 TKCCVCRKSIWGSFQGLRCS--WCKVKCHKKCAEKVP 46 (49)
T ss_pred CCccccccccCcCCCCcCCC--CCCchHHHHHHhhcC
Confidence 57999998633 367898 999999999997653
No 77
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.80 E-value=19 Score=29.04 Aligned_cols=31 Identities=29% Similarity=0.685 Sum_probs=19.3
Q ss_pred cccccCCCCCCCCCEE-Eec--CCCceecccccc
Q 004708 325 SCDICRRSETILNPIL-ICS--GCKVAVHLDCYR 355 (734)
Q Consensus 325 ~CsVC~~~E~~~N~IV-~Cd--~C~iaVHq~CYG 355 (734)
.|-||++.+...+.++ -|. |---.||+.|.-
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~ 34 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLE 34 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHH
Confidence 4889998444445544 333 223579999964
No 78
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=21.84 E-value=72 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=19.1
Q ss_pred CCCcccccCCCCC-CCCCEEEecCCCce
Q 004708 322 HPRSCDICRRSET-ILNPILICSGCKVA 348 (734)
Q Consensus 322 ~~~~CsVC~~~E~-~~N~IV~Cd~C~ia 348 (734)
....|.+|...-. ..+-..+|+.|+-.
T Consensus 7 ~~~~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 7 PNEPCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CCCcCCCCCCeEeEccCCEEEhhhCceE
Confidence 3457999997532 35678899998743
No 79
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.60 E-value=38 Score=38.27 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=28.7
Q ss_pred CCcccccCCCC-CCCCCEEEecCCCceeccccccCC
Q 004708 323 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYRNA 357 (734)
Q Consensus 323 ~~~CsVC~~~E-~~~N~IV~Cd~C~iaVHq~CYGv~ 357 (734)
...|.||.+.- ..+-+-..|-+|.+.||..|-+..
T Consensus 141 r~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v 176 (593)
T KOG0695|consen 141 RAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLV 176 (593)
T ss_pred ceeeeechhhhhhcccccceeecceeehhhhhcccc
Confidence 46899998743 245678899999999999999865
Done!