Query 004710
Match_columns 734
No_of_seqs 258 out of 784
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 92.2 1.1 3.7E-05 48.9 12.9 36 223-258 202-239 (511)
2 3l1l_A Arginine/agmatine antip 79.1 1.3 4.6E-05 47.2 4.2 14 324-337 300-313 (445)
3 3gia_A Uncharacterized protein 74.0 5.8 0.0002 42.3 7.4 14 229-242 195-208 (444)
4 2l6p_A PHAC1, PHAC2 and PHAD g 24.9 28 0.00097 31.9 1.8 22 704-727 30-51 (124)
5 3luu_A Uncharacterized protein 20.0 35 0.0012 29.9 1.3 21 703-723 34-54 (101)
6 2l6n_A Uncharacterized protein 19.8 42 0.0014 31.2 1.9 15 704-718 37-51 (132)
7 2rdd_B UPF0092 membrane protei 18.4 1.6E+02 0.0054 21.4 4.3 26 435-460 1-26 (37)
8 3bkd_A Transmembrane domain of 16.3 68 0.0023 21.9 1.7 15 57-71 8-22 (26)
9 3lbw_A M2 protein; proton chan 16.0 72 0.0025 21.2 1.7 15 57-71 5-19 (23)
10 2ljb_A M2 protein, BM2 protein 16.0 67 0.0023 23.4 1.7 19 57-75 12-30 (35)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=92.19 E-value=1.1 Score=48.92 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=22.2
Q ss_pred cceeeechhhhhhccchhhhccCCCCC--ccceeeehh
Q 004710 223 GGWMSLGGILLCITGSEAMFADLGHFS--QLSIKIAFT 258 (734)
Q Consensus 223 ~g~~~LG~V~L~iTGaEALyADlGHFg--~~~I~~aw~ 258 (734)
.+|..+..++.+.+|-|+.-.=-+-.- +|.|..|=.
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 456677788999999998644333332 344544433
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=79.08 E-value=1.3 Score=47.15 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=9.3
Q ss_pred HHHHHHHcCCCCce
Q 004710 324 IIKQCSALGCFPRV 337 (734)
Q Consensus 324 ii~Qai~Lg~fPr~ 337 (734)
+....-+-|.+||.
T Consensus 300 ~~~~~a~dg~lP~~ 313 (445)
T 3l1l_A 300 TAKAAADDGLFPPI 313 (445)
T ss_dssp HHHHHHHTTSSCGG
T ss_pred HHHHHHhCCCCcHH
Confidence 34455677899964
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=74.05 E-value=5.8 Score=42.26 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=9.7
Q ss_pred chhhhhhccchhhh
Q 004710 229 GGILLCITGSEAMF 242 (734)
Q Consensus 229 G~V~L~iTGaEALy 242 (734)
...+.+.+|-|+.-
T Consensus 195 ~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 195 AIFFLSYMGFGVIT 208 (444)
T ss_dssp HHGGGGGTHHHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 33457888999763
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=24.94 E-value=28 Score=31.92 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=15.6
Q ss_pred HHHHHhccCCCCcccccCCCCEEE
Q 004710 704 YEFLRRNTRVPSYALSVPHASTLE 727 (734)
Q Consensus 704 Y~FLRkNcR~~~~~L~IPh~~LlE 727 (734)
|.|||.||+.+...-. .+++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999876543 555543
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=20.02 E-value=35 Score=29.91 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=10.5
Q ss_pred HHHHHHhccCCCCcccccCCC
Q 004710 703 GYEFLRRNTRVPSYALSVPHA 723 (734)
Q Consensus 703 ~Y~FLRkNcR~~~~~L~IPh~ 723 (734)
=|.|||.||+.+...-.-+.+
T Consensus 34 ~~~wLRd~c~ca~c~~~~t~q 54 (101)
T 3luu_A 34 TFEHLRVECPCAECKGHTPDQ 54 (101)
T ss_dssp EHHHHHHTCCCC---------
T ss_pred CHHHHHhhCCChhhcCccCCc
Confidence 478999999987765443333
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=19.78 E-value=42 Score=31.18 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=12.3
Q ss_pred HHHHHhccCCCCccc
Q 004710 704 YEFLRRNTRVPSYAL 718 (734)
Q Consensus 704 Y~FLRkNcR~~~~~L 718 (734)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 589999999986553
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=18.39 E-value=1.6e+02 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=13.4
Q ss_pred CccHHHHHHHHHHHHHHHhhhhHHHH
Q 004710 435 GAWVPIALAFIFLIVMCVWHYGTLKK 460 (734)
Q Consensus 435 GGW~pl~ia~~~~~iM~~W~~G~~~~ 460 (734)
|||..++.-++++.+||..-.-..+|
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~K 26 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQK 26 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45666555555566665443333333
No 8
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=16.34 E-value=68 Score=21.86 Aligned_cols=15 Identities=40% Similarity=0.904 Sum_probs=13.1
Q ss_pred hhhhhhhhHHHHHHH
Q 004710 57 NEEIFGALSFIFWTL 71 (734)
Q Consensus 57 ~~~vlGvlSLIfWtL 71 (734)
..+|+|+|-||.|-+
T Consensus 8 aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 8 AASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999999976
No 9
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=16.04 E-value=72 Score=21.24 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=13.0
Q ss_pred hhhhhhhhHHHHHHH
Q 004710 57 NEEIFGALSFIFWTL 71 (734)
Q Consensus 57 ~~~vlGvlSLIfWtL 71 (734)
..+|+|+|-||.|-+
T Consensus 5 aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 5 AASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 368999999999976
No 10
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=15.98 E-value=67 Score=23.43 Aligned_cols=19 Identities=37% Similarity=0.712 Sum_probs=15.4
Q ss_pred hhhhhhhhHHHHHHHhHhh
Q 004710 57 NEEIFGALSFIFWTLTLVP 75 (734)
Q Consensus 57 ~~~vlGvlSLIfWtLtliv 75 (734)
..+|+|+|=||.|.+-=.-
T Consensus 12 aA~IigiLHlilWildrLf 30 (35)
T 2ljb_A 12 AASIIGILHFIAWTIGHLN 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 4789999999999985433
Done!