Query 004710
Match_columns 734
No_of_seqs 258 out of 784
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 03:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004710.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004710hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 20.2 30 0.0022 21.9 2.2 20 436-455 5-24 (27)
2 d2yvxa3 f.57.1.1 (A:276-448) M 13.6 35 0.0025 30.9 2.0 119 263-397 12-132 (173)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 11.3 36 0.0026 25.6 1.0 41 262-307 14-54 (57)
4 d1or7a2 a.177.1.1 (A:-1-111) S 10.6 63 0.0046 25.9 2.5 24 692-715 73-96 (113)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 6.5 1.4E+02 0.011 23.5 3.0 26 534-559 57-82 (103)
6 d1krha2 c.25.1.2 (A:206-338) B 6.2 1.9E+02 0.014 23.3 3.7 39 318-356 17-55 (133)
7 d1ug8a_ d.68.7.1 (A:) Poly(A)- 6.0 1.3E+02 0.0097 24.2 2.4 21 564-584 8-28 (87)
8 d1biha4 b.1.1.4 (A:307-395) He 5.0 1.5E+02 0.011 22.2 2.1 58 487-555 17-74 (89)
9 d1f2qa2 b.1.1.4 (A:86-174) IgE 5.0 1.9E+02 0.014 21.8 2.7 29 533-561 47-75 (89)
10 d1cs6a3 b.1.1.4 (A:209-299) Ax 4.8 1.6E+02 0.011 22.1 2.0 60 487-558 19-78 (91)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.23 E-value=30 Score=21.92 Aligned_cols=20 Identities=35% Similarity=0.876 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHHHHHhhh
Q 004710 436 AWVPIALAFIFLIVMCVWHY 455 (734)
Q Consensus 436 GW~pl~ia~~~~~iM~~W~~ 455 (734)
||+.|+.-+.-.+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888888777888888854
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=13.63 E-value=35 Score=30.88 Aligned_cols=119 Identities=8% Similarity=0.053 Sum_probs=66.7
Q ss_pred hHHHHhcccc--hhhhhcCCCCCccccCccceeccCcchhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHcCCCCceeEE
Q 004710 263 PSLILAYMGQ--AAYLSQHHVLDNDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIV 340 (734)
Q Consensus 263 P~L~L~Y~GQ--aA~ll~~p~~~~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSii~Qai~Lg~fPr~ki~ 340 (734)
|-|+++.+|+ +|+++.+- |+.-+-+-. =..+.|+ ++-.+.-++||+.. ++-+++++|-+-+-.
T Consensus 12 pWL~i~l~~~~~~a~ii~~F---e~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~-- 76 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGF---ESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD-- 76 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh--
Confidence 4455555554 46666654 332222211 1256666 67778888999874 888999999643211
Q ss_pred ecCCccccceeechhHHHHHHHhheeEEeecCcchhcccccceehhHHHHHHHHHHH
Q 004710 341 HTSSKIHGQIYIPEINWILMILCLAVTIGFRDTKRMGNASGLAVITVMLVTTCLMSL 397 (734)
Q Consensus 341 hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~ 397 (734)
.-+...-++.+-.+|=+.+-..+.....+++...++-+=|++...+|++.+++=++
T Consensus 77 -~~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 77 -WRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223345666667766555554444445555555555556666565555555433
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.33 E-value=36 Score=25.56 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=27.5
Q ss_pred hhHHHHhcccchhhhhcCCCCCccccCccceeccCcchhHHHHHHH
Q 004710 262 YPSLILAYMGQAAYLSQHHVLDNDYRIGFYVSVPEKLRWPVLVIAI 307 (734)
Q Consensus 262 ~P~L~L~Y~GQaA~ll~~p~~~~~~~npFf~~~P~~~~~P~~vlAt 307 (734)
+-++++--++=+.|+.++. . +|.-|.++|+.+.|-++-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~---~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERG---A--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTT---S--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcC---C--CCccccccchhhhhheeeeec
Confidence 3344454566677888775 2 344599999999997765544
No 4
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=10.64 E-value=63 Score=25.85 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHHHhccCCCC
Q 004710 692 SSALKKLVINYGYEFLRRNTRVPS 715 (734)
Q Consensus 692 Ss~lKK~vIn~~Y~FLRkNcR~~~ 715 (734)
.+|+.+++-|.++.++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998754
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.54 E-value=1.4e+02 Score=23.53 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCccEEEEEEEEeee
Q 004710 534 EERFLVGHIGPRQYRIYRCIVRYGYR 559 (734)
Q Consensus 534 ~eR~~v~~l~~~~~~~yrv~vRyGy~ 559 (734)
+..+.+..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 34577888888888999999998764
No 6
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=6.23 E-value=1.9e+02 Score=23.31 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHcCCCCceeEEecCCccccceeechhH
Q 004710 318 ITGTFSIIKQCSALGCFPRVKIVHTSSKIHGQIYIPEIN 356 (734)
Q Consensus 318 Isg~FSii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vN 356 (734)
|+-..|+++++.+.+.-+++.++|..+...--+|--++.
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~ 55 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLD 55 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHH
Confidence 455667777777777777778888777665555555543
No 7
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.01 E-value=1.3e+02 Score=24.20 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHcCC
Q 004710 564 DDMEFEKDLVCSIAEFIRSGS 584 (734)
Q Consensus 564 ~~~~F~~~lv~~L~~FI~~e~ 584 (734)
+..+|.+++++.|.+|+..|+
T Consensus 8 d~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 8 DQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHcCcc
Confidence 446899999999999998754
No 8
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}
Probab=4.99 E-value=1.5e+02 Score=22.20 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=35.5
Q ss_pred cCcEEEEeCCCCCcchhhhhhhhcccccceEEEEEEEEEecccccCCCccEEEEEecCCCccEEEEEEE
Q 004710 487 RGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVR 555 (734)
Q Consensus 487 pG~~~f~t~~~~~vP~~~~h~l~~~~~lhe~~Vfl~v~~~~vP~V~~~eR~~v~~l~~~~~~~yrv~vR 555 (734)
.|--+-++=...|.|+.-..+.++...+++.-..+ .+..+.+..+...+.|.|+|+++
T Consensus 17 ~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-----------~~~~L~i~~v~~~d~G~Y~C~a~ 74 (89)
T d1biha4 17 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV-----------TDSGLVIKGVKNGDKGYYGCRAT 74 (89)
T ss_dssp TTSCEEEECEEEEESCCCCEEEETTEECCSSSEEE-----------ETTEEEESSCCSTTCEEEEEEEE
T ss_pred CCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEE-----------eeeeEEECCCChhhCEEEEEEEE
Confidence 35555555556788775555555544443321111 13447777888888899999998
No 9
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.97 E-value=1.9e+02 Score=21.81 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=22.9
Q ss_pred CCccEEEEEecCCCccEEEEEEEEeeecc
Q 004710 533 PEERFLVGHIGPRQYRIYRCIVRYGYRDV 561 (734)
Q Consensus 533 ~~eR~~v~~l~~~~~~~yrv~vRyGy~d~ 561 (734)
...++.+..+...+-|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 44568888888777899999999887544
No 10
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.75 E-value=1.6e+02 Score=22.11 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=36.8
Q ss_pred cCcEEEEeCCCCCcchhhhhhhhcccccceEEEEEEEEEecccccCCCccEEEEEecCCCccEEEEEEEEee
Q 004710 487 RGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGY 558 (734)
Q Consensus 487 pG~~~f~t~~~~~vP~~~~h~l~~~~~lhe~~Vfl~v~~~~vP~V~~~eR~~v~~l~~~~~~~yrv~vRyGy 558 (734)
.|--+-++=...|.|+.-.++.+.+.. ....++..+..+.+..+...+.|.|+|++.=.+
T Consensus 19 ~G~~v~l~C~~~g~P~p~i~W~k~~~~------------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T d1cs6a3 19 TGQMVTLECFAFGNPVPQIKWRKLDGS------------QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK 78 (91)
T ss_dssp TTCCEEEECEEEEESCCEEEEEECCSC------------CSCCCSBSSSEEEECSCCGGGCEEEEEEEEETT
T ss_pred cCCcEEEEEEEEEccCCEEEEEecccc------------cceEeeeeeeEEEeCCCCccCCEEEEEEEEECC
Confidence 455555555556777655555543322 122233445568888888888899999998433
Done!