Query 004712
Match_columns 734
No_of_seqs 491 out of 3419
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 11:38:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1E-116 3E-121 999.9 52.3 577 91-732 64-641 (727)
2 PLN03192 Voltage-dependent pot 100.0 5.1E-68 1.1E-72 637.9 53.8 477 66-633 23-499 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 1.2E-61 2.6E-66 512.3 37.4 428 112-630 4-433 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 2.3E-60 5E-65 505.1 28.9 494 91-673 204-698 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 6.4E-55 1.4E-59 465.8 31.6 424 94-622 217-643 (815)
6 PRK09392 ftrB transcriptional 99.7 4.9E-16 1.1E-20 160.5 17.5 187 496-701 6-192 (236)
7 PRK11753 DNA-binding transcrip 99.6 1.2E-14 2.7E-19 147.2 19.9 186 506-706 6-193 (211)
8 PRK11161 fumarate/nitrate redu 99.6 1.1E-14 2.4E-19 150.3 18.6 193 499-707 15-210 (235)
9 KOG3713 Voltage-gated K+ chann 99.5 2.5E-13 5.3E-18 147.1 19.7 191 145-430 239-435 (477)
10 TIGR03697 NtcA_cyano global ni 99.5 1.6E-13 3.4E-18 137.1 15.6 161 528-701 1-162 (193)
11 PRK10402 DNA-binding transcrip 99.5 1E-13 2.2E-18 142.4 14.4 170 513-707 24-195 (226)
12 PRK09391 fixK transcriptional 99.5 6.5E-13 1.4E-17 136.8 16.1 171 515-707 33-205 (230)
13 PRK13918 CRP/FNR family transc 99.5 9.5E-13 2E-17 132.5 16.4 167 519-707 5-175 (202)
14 COG0664 Crp cAMP-binding prote 99.5 1.8E-12 3.8E-17 130.6 17.5 184 501-699 4-188 (214)
15 PF00520 Ion_trans: Ion transp 99.4 9.7E-13 2.1E-17 130.8 12.7 193 150-421 1-200 (200)
16 KOG1545 Voltage-gated shaker-l 99.4 6.4E-14 1.4E-18 144.2 2.2 282 60-431 142-452 (507)
17 cd00038 CAP_ED effector domain 99.4 4.7E-12 1E-16 113.6 12.7 111 504-625 1-112 (115)
18 smart00100 cNMP Cyclic nucleot 99.4 1.7E-11 3.6E-16 110.5 14.7 114 504-626 1-115 (120)
19 PF00027 cNMP_binding: Cyclic 99.3 9.8E-12 2.1E-16 107.5 10.4 90 522-622 1-91 (91)
20 KOG0614 cGMP-dependent protein 99.1 7.8E-11 1.7E-15 127.3 8.6 131 494-633 269-400 (732)
21 PLN02868 acyl-CoA thioesterase 99.1 5.4E-10 1.2E-14 125.1 13.4 113 496-621 7-119 (413)
22 COG2905 Predicted signal-trans 99.1 2.7E-09 5.8E-14 117.4 15.6 117 496-626 6-122 (610)
23 KOG1419 Voltage-gated K+ chann 99.0 1.1E-09 2.4E-14 119.2 12.1 89 369-464 266-354 (654)
24 KOG0614 cGMP-dependent protein 99.0 7.5E-10 1.6E-14 119.9 7.7 115 492-621 149-263 (732)
25 KOG1113 cAMP-dependent protein 99.0 1.4E-09 3E-14 113.4 8.0 125 480-621 107-231 (368)
26 PF07885 Ion_trans_2: Ion chan 98.9 1.5E-08 3.3E-13 86.1 10.4 55 372-426 24-78 (79)
27 KOG1113 cAMP-dependent protein 98.8 2E-08 4.4E-13 104.8 8.7 120 491-624 234-353 (368)
28 KOG1420 Ca2+-activated K+ chan 98.7 1.4E-08 3E-13 110.4 3.8 136 370-513 286-426 (1103)
29 KOG4390 Voltage-gated A-type K 98.5 1.1E-08 2.3E-13 106.9 -0.9 53 373-425 357-413 (632)
30 KOG2968 Predicted esterase of 98.0 1.3E-05 2.7E-10 92.4 7.4 113 512-635 500-613 (1158)
31 PRK10537 voltage-gated potassi 97.9 0.00018 4E-09 79.6 14.8 54 372-425 168-221 (393)
32 PF08412 Ion_trans_N: Ion tran 97.7 1.3E-05 2.9E-10 66.9 2.0 49 80-128 20-70 (77)
33 KOG3684 Ca2+-activated K+ chan 97.7 0.0034 7.4E-08 68.4 20.0 92 369-468 284-375 (489)
34 PF01007 IRK: Inward rectifier 97.7 0.00018 3.9E-09 77.8 10.4 55 371-425 83-139 (336)
35 KOG2968 Predicted esterase of 97.5 0.00048 1E-08 79.8 11.3 114 515-632 110-224 (1158)
36 KOG1418 Tandem pore domain K+ 97.3 0.00057 1.2E-08 76.4 7.8 58 373-430 116-173 (433)
37 PF04831 Popeye: Popeye protei 97.0 0.03 6.6E-07 52.7 14.8 107 507-623 14-122 (153)
38 PRK11832 putative DNA-binding 96.8 0.078 1.7E-06 53.1 16.7 97 511-621 13-110 (207)
39 KOG3542 cAMP-regulated guanine 95.9 0.017 3.7E-07 65.2 6.8 114 494-621 278-392 (1283)
40 KOG3827 Inward rectifier K+ ch 95.5 0.062 1.4E-06 57.7 9.3 58 372-429 112-171 (400)
41 KOG4404 Tandem pore domain K+ 95.5 0.065 1.4E-06 56.3 9.2 57 373-429 187-251 (350)
42 KOG4404 Tandem pore domain K+ 95.3 0.0064 1.4E-07 63.6 1.0 47 371-417 79-125 (350)
43 PLN03223 Polycystin cation cha 95.2 12 0.00025 47.1 27.7 66 99-168 1170-1235(1634)
44 KOG2302 T-type voltage-gated C 94.6 1.5 3.3E-05 52.2 17.5 90 90-205 1100-1200(1956)
45 KOG3193 K+ channel subunit [In 94.1 0.14 3E-06 56.8 7.4 41 374-414 219-259 (1087)
46 KOG1418 Tandem pore domain K+ 90.9 0.066 1.4E-06 59.7 -0.1 49 371-419 241-297 (433)
47 KOG3542 cAMP-regulated guanine 89.7 0.5 1.1E-05 53.9 5.4 105 483-610 23-127 (1283)
48 KOG2301 Voltage-gated Ca2+ cha 81.1 14 0.00031 48.0 12.7 44 145-208 871-915 (1592)
49 COG4709 Predicted membrane pro 72.4 18 0.0004 35.5 8.0 72 438-511 6-81 (195)
50 KOG3614 Ca2+/Mg2+-permeable ca 70.8 3.1E+02 0.0067 35.2 21.2 63 189-258 853-918 (1381)
51 PF07883 Cupin_2: Cupin domain 67.5 8.1 0.00018 31.1 4.0 45 523-574 3-48 (71)
52 KOG3676 Ca2+-permeable cation 67.1 2.9E+02 0.0063 33.4 23.1 75 385-460 601-682 (782)
53 PF08006 DUF1700: Protein of u 64.6 33 0.00071 33.7 8.4 56 437-494 5-64 (181)
54 KOG0498 K+-channel ERG and rel 63.9 38 0.00083 40.6 10.0 42 480-521 371-417 (727)
55 PLN03192 Voltage-dependent pot 61.6 3.9E+02 0.0085 33.0 20.8 42 449-495 357-398 (823)
56 PRK13290 ectC L-ectoine syntha 61.4 39 0.00084 31.3 7.7 69 521-608 38-106 (125)
57 TIGR03037 anthran_nbaC 3-hydro 59.3 23 0.00049 34.2 5.8 62 532-611 43-104 (159)
58 TIGR00870 trp transient-recept 58.8 4.1E+02 0.0088 32.3 25.3 46 396-441 586-632 (743)
59 PF14377 DUF4414: Domain of un 56.9 14 0.0003 33.3 3.8 44 450-493 52-105 (108)
60 PF00060 Lig_chan: Ligand-gate 55.2 14 0.0003 34.5 3.8 76 368-449 40-115 (148)
61 PF13314 DUF4083: Domain of un 52.9 62 0.0013 25.5 6.1 48 397-447 3-56 (58)
62 KOG2302 T-type voltage-gated C 49.6 6.2E+02 0.013 31.7 21.5 57 107-172 81-140 (1956)
63 PRK13264 3-hydroxyanthranilate 48.8 37 0.0008 33.3 5.5 60 536-612 52-111 (177)
64 PF08016 PKD_channel: Polycyst 47.3 4.3E+02 0.0092 29.7 14.8 20 189-208 233-253 (425)
65 KOG2301 Voltage-gated Ca2+ cha 43.2 2.5E+02 0.0054 37.2 13.0 44 144-208 471-516 (1592)
66 KOG4440 NMDA selective glutama 42.9 70 0.0015 37.1 7.2 53 374-426 615-667 (993)
67 PF10011 DUF2254: Predicted me 41.9 1.1E+02 0.0025 33.8 8.9 62 368-429 96-157 (371)
68 PF07697 7TMR-HDED: 7TM-HD ext 40.5 97 0.0021 31.1 7.5 58 481-539 147-207 (222)
69 PF05899 Cupin_3: Protein of u 40.1 54 0.0012 27.1 4.6 42 525-574 14-55 (74)
70 smart00835 Cupin_1 Cupin. This 40.1 76 0.0017 29.8 6.2 54 520-575 32-87 (146)
71 KOG1053 Glutamate-gated NMDA-t 39.5 4.1E+02 0.009 32.7 12.9 47 377-425 616-662 (1258)
72 KOG1054 Glutamate-gated AMPA-t 38.2 34 0.00075 39.3 3.9 69 375-449 598-666 (897)
73 KOG3609 Receptor-activated Ca2 37.7 8.4E+02 0.018 29.8 17.7 73 374-448 555-633 (822)
74 COG0662 {ManC} Mannose-6-phosp 37.7 76 0.0016 29.2 5.7 48 519-573 37-85 (127)
75 COG1917 Uncharacterized conser 31.7 1E+02 0.0022 28.3 5.5 50 520-576 45-95 (131)
76 PF14377 DUF4414: Domain of un 31.2 71 0.0015 28.6 4.2 48 450-497 8-68 (108)
77 PF01484 Col_cuticle_N: Nemato 28.9 2.5E+02 0.0055 21.1 7.0 42 401-442 8-49 (53)
78 PLN03223 Polycystin cation cha 28.0 1.5E+03 0.032 29.7 17.5 31 398-428 1395-1425(1634)
79 PF00520 Ion_trans: Ion transp 26.0 3.6E+02 0.0078 25.6 8.7 25 270-294 99-123 (200)
80 PRK06771 hypothetical protein; 24.4 3.4E+02 0.0073 23.8 6.8 59 400-461 3-61 (93)
81 COG5559 Uncharacterized conser 24.0 63 0.0014 25.5 2.1 19 476-494 5-23 (65)
82 PF13623 SurA_N_2: SurA N-term 23.0 1.8E+02 0.0039 27.6 5.5 45 404-448 10-67 (145)
83 COG4016 Uncharacterized protei 22.2 41 0.00089 31.2 0.9 13 719-731 61-73 (165)
84 TIGR03404 bicupin_oxalic bicup 21.9 2.3E+02 0.005 31.4 6.9 52 520-574 69-121 (367)
85 COG1422 Predicted membrane pro 21.7 3.3E+02 0.0071 27.3 7.1 39 409-447 48-89 (201)
86 PF02037 SAP: SAP domain; Int 21.7 1.8E+02 0.004 20.3 4.0 26 438-463 5-35 (35)
87 TIGR00769 AAA ADP/ATP carrier 21.2 1.3E+03 0.028 26.5 14.9 33 369-408 140-173 (472)
88 PRK11171 hypothetical protein; 21.1 2E+02 0.0043 30.2 6.0 49 519-574 185-234 (266)
89 PF12973 Cupin_7: ChrR Cupin-l 20.6 3.1E+02 0.0068 23.3 6.2 64 519-607 25-88 (91)
90 PRK04190 glucose-6-phosphate i 20.6 4.1E+02 0.0089 26.5 7.7 51 521-574 71-131 (191)
91 COG4792 EscU Type III secretor 20.5 9.7E+02 0.021 25.7 10.5 76 381-462 165-241 (349)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-116 Score=999.93 Aligned_cols=577 Identities=55% Similarity=0.912 Sum_probs=518.9
Q ss_pred cCCCeeecCCChHHHHHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004712 91 VSEKKIFDPQDKLLLFCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTA 170 (734)
Q Consensus 91 ~~~~~ii~P~s~~~~~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~ 170 (734)
...++||||+|+++..||++++++|+|+++++|++|+|+..++...| +|..+...++++|+++|+||++||+++|+||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 44467999999999999999999999999999999999999988999 8999999999999999999999999999999
Q ss_pred eecCCCcccCCCeEEeCHHHHHHHHHhhhhHHHhHhhCcHhHHHHHhhhccCCCchhHHhHHHHHHHHHhhhhhhhHhhc
Q 004712 171 FIAPSSRVFGRGELVIDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRIL 250 (734)
Q Consensus 171 y~~~~s~~~~~G~lV~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~ 250 (734)
|++++|+ ++|.||++||+||+++||++|++|++|+||+++|.++ ...........|..+.++||||||+|++
T Consensus 142 yv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~ 213 (727)
T KOG0498|consen 142 YVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVI 213 (727)
T ss_pred EECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 7999999999999999999999999999999999876 1222233334788888899999999999
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhhcCCCCCcccccccCCCCcccccccc
Q 004712 251 PLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWH 330 (734)
Q Consensus 251 ~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c~~~~~c~~~~l~~~~~~~~~~~sW~ 330 (734)
+++.++++.+|++.++||+++++++++|||++||+||+||++++++++.||+++ +|+
T Consensus 214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-----------------------tw~ 270 (727)
T KOG0498|consen 214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-----------------------TWL 270 (727)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-----------------------ccc
Confidence 999999999999999999999999999999999999999999999999999754 332
Q ss_pred ccchhcccccCCCCCCCCCCCcchhhhhhhcCcccCchhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHH
Q 004712 331 DISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFG 410 (734)
Q Consensus 331 ~~~~~~~~~~c~~~~~~~~f~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G 410 (734)
..... .-.|+ +..|+||+|. ++.+|++|+|||++||||+|||+.+|+|..|++|+|++|++|
T Consensus 271 ~~l~~--~~~~~----~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~G 332 (727)
T KOG0498|consen 271 GSLGR--LLSCY----NLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFG 332 (727)
T ss_pred ccccc--ccccC----cccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHh
Confidence 21100 11222 3347888874 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHH
Q 004712 411 LILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDI 490 (734)
Q Consensus 411 ~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I 490 (734)
+++||++||||++++|+.+.|.++||.|++|+++||++|+||++||+||++|+||+|..++|+||+++|++||++||+||
T Consensus 333 llL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI 412 (727)
T KOG0498|consen 333 LLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDI 412 (727)
T ss_pred HHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCC
Q 004712 491 KRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEG 570 (734)
Q Consensus 491 ~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G 570 (734)
++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|.+ ++...|++|
T Consensus 413 ~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~G 490 (727)
T KOG0498|consen 413 KRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPG 490 (727)
T ss_pred HHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999888744 448999999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAA 650 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~ 650 (734)
|+|||+.++|+++ .| +++||+|+|.|+++.|+++||++++++||+++++++++++|+|+++||+|+++++|++
T Consensus 491 d~~GeEl~~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a 563 (727)
T KOG0498|consen 491 DFFGEELLTWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAA 563 (727)
T ss_pred CccchHHHHHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHH
Confidence 9999888888874 12 4899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHHhhhhhhcccc-cccccccccCCCCCCCCCC
Q 004712 651 WRRYSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAANALRGVHRNRN-AKSARELVKLQKPPEPDFT 729 (734)
Q Consensus 651 ~~~~~~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 729 (734)
|+++.+|+....+...++....+ .++.+.++.++.+..++++|+|+.+.++.+.. +.....++.++||.||||+
T Consensus 564 ~r~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~ 638 (727)
T KOG0498|consen 564 WRRHIKRKGEEELALEEEESAIR-----GDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFS 638 (727)
T ss_pred HHHHHHhhccchhhhhcchhhhc-----cccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCcc
Confidence 99999999887776654433311 14567778999999999999999999887532 2244557899999999999
Q ss_pred Ccc
Q 004712 730 AED 732 (734)
Q Consensus 730 ~~~ 732 (734)
.++
T Consensus 639 ~~~ 641 (727)
T KOG0498|consen 639 DAE 641 (727)
T ss_pred ccc
Confidence 654
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=5.1e-68 Score=637.92 Aligned_cols=477 Identities=21% Similarity=0.346 Sum_probs=393.4
Q ss_pred cccccccccccccCccccccCcccccCCCeeecCCChHHHHHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccch
Q 004712 66 SEGLKSIGRSLRFGVSRAVFPEDLKVSEKKIFDPQDKLLLFCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLA 145 (734)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ii~P~s~~~~~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~ 145 (734)
+..++++.+.+....+.+.+.+.....+++||+|.++++.+||.+++++++|+++++|+.++|... ...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~-----------~~~ 91 (823)
T PLN03192 23 SLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA-----------SPK 91 (823)
T ss_pred ceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC-----------CCC
Confidence 334444554444433334466666677789999999999999999999999999999998765211 112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEEeCHHHHHHHHHhhhhHHHhHhhCcHhHHHHHhhhccCCCc
Q 004712 146 ITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGS 225 (734)
Q Consensus 146 ~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~ 225 (734)
..+.+++.++|++|++||+++|+|||++++ .|.+|.||++|++||+++||++|++|++|++.+.... .....
T Consensus 92 ~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~-~~~~~-- 163 (823)
T PLN03192 92 RGLEIADNVVDLFFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLI-TGTVK-- 163 (823)
T ss_pred CCeeeHHHHHHHHHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHh-cCCcc--
Confidence 245678999999999999999999999986 5889999999999999999999999999998775432 11111
Q ss_pred hhHHhHHHHHHHHHhhhhhhhHhhcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhh
Q 004712 226 DVLATKQALFFIVLFQYFPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKAC 305 (734)
Q Consensus 226 ~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c 305 (734)
.....++|++++ +.|+.|+.+++.++++... ....|...+..+++.++++||+||+||+++..
T Consensus 164 -~~~~~~~l~llr----l~Rl~ri~~~~~~le~~~~--~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~---------- 226 (823)
T PLN03192 164 -LNLSYSLLGLLR----FWRLRRVKQLFTRLEKDIR--FSYFWIRCARLLSVTLFLVHCAGCLYYLIADR---------- 226 (823)
T ss_pred -chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 111223444333 4455555666666655433 22345555666666677999999999999831
Q ss_pred cCCCCCcccccccCCCCccccccccccchhcccccCCCCCCCCCCCcchhhhhhhcCcccCchhHHHHHHHHHHHhHhcc
Q 004712 306 SVTANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLS 385 (734)
Q Consensus 306 ~~~~~c~~~~l~~~~~~~~~~~sW~~~~~~~~~~~c~~~~~~~~f~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlt 385 (734)
+ ...+.+|+.... +. ..+.+++.+|++|+||+++|||
T Consensus 227 ---------~-------~~~~~~Wi~~~~-------------~~--------------~~~~s~~~~Yi~slYwai~Tmt 263 (823)
T PLN03192 227 ---------Y-------PHQGKTWIGAVI-------------PN--------------FRETSLWIRYISAIYWSITTMT 263 (823)
T ss_pred ---------c-------CCCCCchHHHhh-------------hc--------------cccCcHHHHHHHHHHHHHHHHh
Confidence 0 123468864210 00 1256899999999999999999
Q ss_pred cccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 004712 386 TLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQY 465 (734)
Q Consensus 386 tvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y 465 (734)
||||||++|.|..|++|+|++|++|+++|||+||+|++++++.+.+.++|+++++.+++||++++||+.|++||++|++|
T Consensus 264 TVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~ 343 (823)
T PLN03192 264 TVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCL 343 (823)
T ss_pred hccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHhCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEE
Q 004712 466 KWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFII 545 (734)
Q Consensus 466 ~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~ 545 (734)
+|+. .+.+++++++.||++||.+|..+++.+.++++++|++++++++.+++..++++.|.|||.|+.+||+++++|||.
T Consensus 344 ~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~ 422 (823)
T PLN03192 344 RFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVV 422 (823)
T ss_pred HHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEE
Confidence 9975 468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHH
Q 004712 546 RGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 625 (734)
Q Consensus 546 ~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~ 625 (734)
+|.|+++..++|++.+ +..+++|++|||.+++ ...| ++.+++|.++|+++.|++++|.++++++|+...
T Consensus 423 ~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~l---~~~p------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~ 491 (823)
T PLN03192 423 SGEVEIIDSEGEKERV--VGTLGCGDIFGEVGAL---CCRP------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNV 491 (823)
T ss_pred ecEEEEEEecCCccee--eEEccCCCEecchHHh---cCCC------CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHH
Confidence 9999998777778777 7899999999999874 2333 678999999999999999999999999999888
Q ss_pred HHHHHHHH
Q 004712 626 RQVQHTFR 633 (734)
Q Consensus 626 ~~l~~~~r 633 (734)
..+++..+
T Consensus 492 ~i~~~~l~ 499 (823)
T PLN03192 492 VILKNFLQ 499 (823)
T ss_pred HHHHHHHH
Confidence 77777665
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-61 Score=512.33 Aligned_cols=428 Identities=25% Similarity=0.389 Sum_probs=353.8
Q ss_pred HHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEEeCHHHH
Q 004712 112 VISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELVIDPAQI 191 (734)
Q Consensus 112 l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV~d~~~I 191 (734)
.+.++|++++++..+.|+.++. .....|..++.++|++|++||++++||||++ +|.+|.|..+.
T Consensus 4 s~~vLYN~~~li~r~~F~di~~---------~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl 67 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQS---------SYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKL 67 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHH
Confidence 4568899999998777776632 2245678899999999999999999999987 69999999999
Q ss_pred HHHHHhh-hhHHHhHhhCcHhHHHHHhhhccCCCchhHHhHHHHHHHHHhhhhhhhHhhcchhhhhhhhhhhHHHHHHHH
Q 004712 192 AKRYMRR-YFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRILPLTSELKRTAGVFAETAWAG 270 (734)
Q Consensus 192 a~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~ 270 (734)
.+||+++ .|.+|++|++|++.+++|.- +. ...| +.||+|++|++.-+.++.+-..... +-
T Consensus 68 ~~hY~~s~~f~lD~l~liP~D~l~~~~~------~~-----~~~r-------~nRllk~yRl~~F~~rTetrT~~Pn-~f 128 (536)
T KOG0500|consen 68 RKHYVHSTQFKLDVLSLIPLDLLLFKDG------SA-----SLER-------LNRLLKIYRLFEFFDRTETRTTYPN-AF 128 (536)
T ss_pred HHHHHHhhhhhhhhhhhcchhHHhhcCC------cc-----hHHH-------HHHHHHHHHHHHHHHHhccccCCch-HH
Confidence 9999988 89999999999999987521 11 1122 3455555555555555543221111 22
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhcchhhHHhhhcCCCCCcccccccCCCCccccccccccchhcccccCCCCCCCCC
Q 004712 271 AAYYLLLYM-LASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDDPP 349 (734)
Q Consensus 271 ~~~~ll~~~-l~~H~~gc~wyll~~~~~~~cw~~~c~~~~~c~~~~l~~~~~~~~~~~sW~~~~~~~~~~~c~~~~~~~~ 349 (734)
-+.+|+.+. ++.||.||++|++|... +.+.++|+... -.++.
T Consensus 129 ri~~lv~~~~ilfHWNaClYf~iS~~~--------------------------g~~~d~wvY~~-----------i~d~~ 171 (536)
T KOG0500|consen 129 RISKLVHYCLILFHWNACLYFLISKAI--------------------------GFTTDDWVYPK-----------INDPE 171 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhhHhc--------------------------CccccccccCC-----------ccCcc
Confidence 245566554 68999999999999521 13445685421 11122
Q ss_pred CCcchhhhhhhcCcccCchhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004712 350 FDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLT 429 (734)
Q Consensus 350 f~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 429 (734)
|. ++. ..++..+|++|+||+..||||+|. .-+|.+..|.+|.|+-.++|+++||.++|++++++.+++
T Consensus 172 ~~----------~c~-~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn 239 (536)
T KOG0500|consen 172 FA----------TCD-AGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN 239 (536)
T ss_pred cc----------ccc-hhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence 21 111 247999999999999999999995 446788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHHHHHHHHHHHhcCcccccCc
Q 004712 430 IRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMD 509 (734)
Q Consensus 430 ~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls 509 (734)
+...||+.+|+.+++||+.|++|..|+.||.+||.|.|.+++..||+++++.||+.|+.+|+.+++.+.|+++++|.+.+
T Consensus 240 a~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce 319 (536)
T KOG0500|consen 240 AARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCE 319 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCC
Q 004712 510 ERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVN 589 (734)
Q Consensus 510 ~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~ 589 (734)
+.++.++..++++..|.|||+|+++||.+.+||+|.+|++++...+++.+ ...+++|++|||.++++ ..+. -+
T Consensus 320 ~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~g~--~~ 392 (536)
T KOG0500|consen 320 AGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IKGN--KN 392 (536)
T ss_pred hhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-EcCc--cc
Confidence 99999999999999999999999999999999999999999987665554 57999999999999864 3332 24
Q ss_pred CCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHH
Q 004712 590 LPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 630 (734)
Q Consensus 590 ~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~ 630 (734)
..+|+++++++..+.+++|+++|+-+++++||+....+.++
T Consensus 393 gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 393 GNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred CCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 56799999999999999999999999999999877665543
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-60 Score=505.15 Aligned_cols=494 Identities=22% Similarity=0.366 Sum_probs=399.4
Q ss_pred cCCCeeecCCChHHHHHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 004712 91 VSEKKIFDPQDKLLLFCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTA 170 (734)
Q Consensus 91 ~~~~~ii~P~s~~~~~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~ 170 (734)
+.++.||--+..|+.+|+++++++.+|+++++|+-+.|---.. ....|.+++.++|++|++||+++|+|.
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~----------~~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQR----------NNVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccccc----------CceeEEEecchhhhhhhhhhhhhccee
Confidence 3446689999999999999999999999999999865542211 134677899999999999999999999
Q ss_pred eecCCCcccCCCeEEeCHHHHHHHHHhhhhHHHhHhhCcHhHHHHHhhhccCCCchhHHhHHHHHHHHHhhhhhhhHhhc
Q 004712 171 FIAPSSRVFGRGELVIDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRIL 250 (734)
Q Consensus 171 y~~~~s~~~~~G~lV~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~ 250 (734)
|+.|. ||+|.||+.|..+|+|+||+||++|++|++.+..+--. ...+-.....|+ +.||+|+.
T Consensus 274 FVGPg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~----degI~SLFSaLK-------VVRLLRLG 336 (971)
T KOG0501|consen 274 FVGPG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERD----DEGIGSLFSALK-------VVRLLRLG 336 (971)
T ss_pred eecCC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcc----cccHHHHHHHHH-------HHHHHHHH
Confidence 99994 99999999999999999999999999999988764321 222333445565 34555555
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhhcCCCCCcccccccCCCCcccccccc
Q 004712 251 PLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWH 330 (734)
Q Consensus 251 ~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c~~~~~c~~~~l~~~~~~~~~~~sW~ 330 (734)
++.+++.+.. ++..+..+..++.|+|+.||+||+||.++..+. ... ..+.-..++|+
T Consensus 337 RVaRKLD~Yl----EYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~--~~n~i~~dsWL 393 (971)
T KOG0501|consen 337 RVARKLDHYL----EYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDE--MDNTIQPDSWL 393 (971)
T ss_pred HHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecc--cccccccchHH
Confidence 5555655532 333444566677899999999999999985221 000 01113457887
Q ss_pred ccchhcccccCCCCCCCCCCCcchhhhhhhcC-cccCchhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHH
Q 004712 331 DISNTTLESKCSADEDDPPFDFGIYSQALSSG-IVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIF 409 (734)
Q Consensus 331 ~~~~~~~~~~c~~~~~~~~f~~g~~~~a~~~~-~~~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~ 409 (734)
-... ++...+|+|-.- ..| .+..++--..|+.|+|+..+.|||||+|++.|.|..|++|++.+|++
T Consensus 394 ~kLa---------~~~~tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii 460 (971)
T KOG0501|consen 394 WKLA---------NDIGTPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMII 460 (971)
T ss_pred HHHH---------hhcCCCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHH
Confidence 5432 334455555310 112 22355677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHH
Q 004712 410 GLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRD 489 (734)
Q Consensus 410 G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~ 489 (734)
|.++||-++|+|++++|+++.....|.+.++.+.+||+-.++|..|.+||.+|.--.|..++|.|-+++|...|+++|.|
T Consensus 461 ~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkAD 540 (971)
T KOG0501|consen 461 GALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKAD 540 (971)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCC
Q 004712 490 IKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKE 569 (734)
Q Consensus 490 I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~ 569 (734)
|..|+.....+..|.|.-.++..+++++..+...+..|||.|+..|+..+.++||++|.+++...++ + +++|+.
T Consensus 541 ICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE----V--VAILGK 614 (971)
T KOG0501|consen 541 ICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE----V--VAILGK 614 (971)
T ss_pred eeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc----E--EEEeec
Confidence 9999999999999999999999999999999999999999999999999999999999999986543 1 789999
Q ss_pred CCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004712 570 GDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQA 649 (734)
Q Consensus 570 Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~ 649 (734)
||.||+.- |... .+..+-++|+|+|.|.+..|.++.+.+++.=|-.++.-.-++..--| .
T Consensus 615 GDVFGD~F--WK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~LTy-------------N 674 (971)
T KOG0501|consen 615 GDVFGDEF--WKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLTLTY-------------N 674 (971)
T ss_pred CccchhHH--hhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhceeeEe-------------e
Confidence 99999874 3322 23347889999999999999999999999887766554333322212 2
Q ss_pred HHHHHHHhHHHHHhhHHHhHhhhh
Q 004712 650 AWRRYSKRKKMEQTRKEEEEEEAS 673 (734)
Q Consensus 650 ~~~~~~~R~~~~~~~~aeer~~~~ 673 (734)
.-.|+.-|+.+...+++|++...-
T Consensus 675 Lr~RiiFRKvaDVKrEkE~~~krK 698 (971)
T KOG0501|consen 675 LRHRIIFRKVADVKREKELRAKRK 698 (971)
T ss_pred ccceeeeeehhhhhhhHHHHHhhc
Confidence 345566788888888888776633
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-55 Score=465.81 Aligned_cols=424 Identities=22% Similarity=0.370 Sum_probs=356.2
Q ss_pred CeeecCCC-hHHHHHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHH-HHhhhce
Q 004712 94 KKIFDPQD-KLLLFCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMA-LQFRTAF 171 (734)
Q Consensus 94 ~~ii~P~s-~~~~~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~-l~F~T~y 171 (734)
...|||++ .++..|-.++.++..+++|++|+...||+....+ -..|.+.+.++|++|++||+ ++=|.-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 34799998 9999999999999999999999999999885433 24677899999999999995 5566666
Q ss_pred ecCCCcccCCCeEEeCHHHHHHHHHhh-hhHHHhHhhCcHhHHHHHhhhccCCCchhHHhHHHHHHHHHhhhhhhhHhhc
Q 004712 172 IAPSSRVFGRGELVIDPAQIAKRYMRR-YFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRIL 250 (734)
Q Consensus 172 ~~~~s~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~ 250 (734)
+- .|.+|.|.+...+||+++ .|-+|++|+||+++++.++ ....+++.+++|++-.++ -++
T Consensus 288 vr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~-----G~~p~wR~~R~lK~~sF~-------e~~ 348 (815)
T KOG0499|consen 288 VR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFF-----GFNPMWRANRMLKYTSFF-------EFN 348 (815)
T ss_pred ee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHh-----ccchhhhhhhHHHHHHHH-------HHH
Confidence 54 599999999999999988 8999999999999887642 122344444444432222 111
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhhcCCCCCcccccccCCCCcccccccc
Q 004712 251 PLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWH 330 (734)
Q Consensus 251 ~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c~~~~~c~~~~l~~~~~~~~~~~sW~ 330 (734)
. .+ ..++.+......+..+-..++++|+.+|+||..+... +.+.+-|+
T Consensus 349 ~---~L---e~i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sayq--------------------------glG~~rWV 396 (815)
T KOG0499|consen 349 H---HL---ESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQ--------------------------GLGTTRWV 396 (815)
T ss_pred H---HH---HHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc--------------------------ccccceeE
Confidence 1 11 1222222222333333333457899999999988421 23567896
Q ss_pred ccchhcccccCCCCCCCCCCCcchhhhhhhcCcccCchhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHH
Q 004712 331 DISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFG 410 (734)
Q Consensus 331 ~~~~~~~~~~c~~~~~~~~f~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G 410 (734)
... -...|++|+|||..|++|+| |+-.|.+.+|++|..+.-+.|
T Consensus 397 ydg-----------------------------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mG 440 (815)
T KOG0499|consen 397 YDG-----------------------------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMG 440 (815)
T ss_pred EcC-----------------------------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHH
Confidence 311 12469999999999999999 888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHH
Q 004712 411 LILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDI 490 (734)
Q Consensus 411 ~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I 490 (734)
++.||++||.|-.++...+...++||..|+++-.||+..+||.+.+.|||.+|+|.|..++..||.+++..||..||.++
T Consensus 441 VFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dl 520 (815)
T KOG0499|consen 441 VFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDL 520 (815)
T ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCC
Q 004712 491 KRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEG 570 (734)
Q Consensus 491 ~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G 570 (734)
+..++-..+.++.+|++++.+.+..++.+++.+.|-|||+|+++||++.+||+|..|.|.+....+|..+ +.+|++|
T Consensus 521 Ai~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~V---l~tL~~G 597 (815)
T KOG0499|consen 521 AIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKV---LVTLKAG 597 (815)
T ss_pred eEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEE---EEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999877766543 6899999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRR 622 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~ 622 (734)
+.|||++++-...+ .+||++|+|...|.+++|+++|+.+++..||+
T Consensus 598 sVFGEISLLaigG~------nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 598 SVFGEISLLAIGGG------NRRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred ceeeeeeeeeecCC------CccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 99999998533222 24999999999999999999999999999994
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.69 E-value=4.9e-16 Score=160.53 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=148.6
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeec
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 575 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 575 (734)
.+.++.+++|..+++++++.+....+.+.|++|+.|+++||+++.+|+|.+|.++++...+|++.+ +.++.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 457889999999999999999999999999999999999999999999999999998777777777 789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004712 576 ELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYS 655 (734)
Q Consensus 576 ~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~ 655 (734)
.++ +...+ +..+++|+++|+++.|++++|.+++.++|.+....++...+ .++.....+.........
T Consensus 84 ~~~---~~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~----~~~~~~~~~~~~~~~~~~ 150 (236)
T PRK09392 84 AAV---VLDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG----CYRGLVKSLKNQKLRSSA 150 (236)
T ss_pred HHH---hCCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHhhcCCHH
Confidence 876 33333 67899999999999999999999999999887766555544 444444444555566667
Q ss_pred HhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHHh
Q 004712 656 KRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAANA 701 (734)
Q Consensus 656 ~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~~ 701 (734)
.|....++..++..+. +.......+++++|..++.+|...+-
T Consensus 151 ~Rla~~Ll~~~~~~~~----~~~~~i~~t~~~iA~~lG~tretvsR 192 (236)
T PRK09392 151 ERLANYLLKQSLRQGG----ADVVTLPYEKRVLASYLGMTPENLSR 192 (236)
T ss_pred HHHHHHHHHhccccCC----CcEEEeeCCHHHHHHHhCCChhHHHH
Confidence 7777776665543221 22233456778899999987776543
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.64 E-value=1.2e-14 Score=147.17 Aligned_cols=186 Identities=12% Similarity=0.167 Sum_probs=141.4
Q ss_pred ccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEeechhhhhhcCC
Q 004712 506 ENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDP 584 (734)
Q Consensus 506 ~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 584 (734)
..++++.++.+...++.+.|+||++|+.+|++++.+|||.+|.++++..+ +|++.+ +.++++|++||+..++ .+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---cC
Confidence 46899999999999999999999999999999999999999999997654 688877 7899999999998763 22
Q ss_pred CCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004712 585 KSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTR 664 (734)
Q Consensus 585 ~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~ 664 (734)
. ++++.+++|.++|+++.|++++|.++++++|++....++.. +++.......+.........+|++..++.
T Consensus 81 ~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~ 151 (211)
T PRK11753 81 G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQM----ARRLQNTSRKVGDLAFLDVTGRIAQTLLD 151 (211)
T ss_pred C-----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 1 12678999999999999999999999999998876554443 34444444555555666677777777666
Q ss_pred HHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhh
Q 004712 665 KEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVH 706 (734)
Q Consensus 665 ~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~ 706 (734)
.+++.+... .+-......++.+||+.++++|...+ +++.++
T Consensus 152 l~~~~~~~~-~~~~~~~~~t~~~lA~~lG~tr~tvsR~l~~l~ 193 (211)
T PRK11753 152 LAKQPDAMT-HPDGMQIKITRQEIGRIVGCSREMVGRVLKMLE 193 (211)
T ss_pred HHHhcCCcC-CCCceecCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 655432211 01112346778999999999998654 344443
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.63 E-value=1.1e-14 Score=150.30 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=145.5
Q ss_pred HhcCcccccCcHHHHHHHHhcCce-EEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeech
Q 004712 499 VRRVPLFENMDERLLDAICERLKP-CLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEE 576 (734)
Q Consensus 499 l~~v~~F~~ls~~~l~~l~~~l~~-~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~ 576 (734)
+++.+.|..+++++++.|...... +.|+||+.|+++||+++++|+|.+|.|+++.. .+|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455555667999999999998864 68999999999999999999999999999875 4688877 7888999999986
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004712 577 LLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSK 656 (734)
Q Consensus 577 ~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~ 656 (734)
.+ .... +..+++|+++|+++.|++++|.+++.++|.+....++.. +++..................
T Consensus 93 ~~---~~~~-------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ 158 (235)
T PRK11161 93 AI---GSGQ-------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLM----SGEIKGDQEMILLLSKKNAEE 158 (235)
T ss_pred cc---cCCC-------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHH
Confidence 54 2211 235899999999999999999999999998876554443 344444444444555666777
Q ss_pred hHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHH-Hhhhhhhc
Q 004712 657 RKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAA-NALRGVHR 707 (734)
Q Consensus 657 R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~-~~~~~~~~ 707 (734)
|++..++..++..+....++.......|+.++|..++.+|... ++++.+++
T Consensus 159 Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l~~ 210 (235)
T PRK11161 159 RLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQK 210 (235)
T ss_pred HHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888887776654432222223445678899999999999954 44555544
No 9
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.5e-13 Score=147.15 Aligned_cols=191 Identities=18% Similarity=0.293 Sum_probs=117.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEEeCHHHHHHHHHhh-hhHHHhHhhCcHhHHHHHhhhccCC
Q 004712 145 AITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRR-YFIIDFLAVLPLPQIVVWRFLLRSN 223 (734)
Q Consensus 145 ~~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~ 223 (734)
...+..++.++-++|.+..+++|..+ |+ ..+++|+ -=+||++|++||+.=+.........
T Consensus 239 ~p~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~ 299 (477)
T KOG3713|consen 239 HPILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGES 299 (477)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccch
Confidence 44688899999999999999999874 32 2355555 3489999999997654332221100
Q ss_pred CchhHHhHHHHHHHHHhhhhhhhHhhcchhhhhhhhhhhHH--HH--HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcch
Q 004712 224 GSDVLATKQALFFIVLFQYFPRFFRILPLTSELKRTAGVFA--ET--AWAGAAYYLLLYM-LASHVVGALWYLLALERND 298 (734)
Q Consensus 224 ~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~--~~--~~~~~~~~ll~~~-l~~H~~gc~wyll~~~~~~ 298 (734)
....-+....+|+++ +.|++||++|.+. .+|.-+ .| +-+.-+-.|++|+ +.+-+++.+-|++-.+..
T Consensus 300 ~~~l~~~~~vvrvlR----~lRI~RI~KLaRh---S~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~- 371 (477)
T KOG3713|consen 300 LKELENAGLVVRVLR----VLRILRIFKLARH---STGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEP- 371 (477)
T ss_pred HHHHhhhhhhHHHHH----HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-
Confidence 111111112333222 3344444444432 333221 11 1111123333333 557778888877542110
Q ss_pred hhHHhhhcCCCCCcccccccCCCCccccccccccchhcccccCCCCCCCCCCCcchhhhhhhcCcccCchhHHHHHHHHH
Q 004712 299 TCWRKACSVTANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLW 378 (734)
Q Consensus 299 ~cw~~~c~~~~~c~~~~l~~~~~~~~~~~sW~~~~~~~~~~~c~~~~~~~~f~~g~~~~a~~~~~~~~~~~~~~Y~~sly 378 (734)
+++ +...-.|+|
T Consensus 372 ------------------------------------------------~~~--------------------FtSIPa~~W 383 (477)
T KOG3713|consen 372 ------------------------------------------------DTK--------------------FTSIPAGFW 383 (477)
T ss_pred ------------------------------------------------CCC--------------------Cccccchhh
Confidence 011 122234899
Q ss_pred HHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004712 379 WGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 430 (734)
Q Consensus 379 wal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 430 (734)
||+.|||||||||.+|.|...++++...++.|++..|+-|..|-+-+.....
T Consensus 384 WaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~ 435 (477)
T KOG3713|consen 384 WAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYS 435 (477)
T ss_pred eeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHH
Confidence 9999999999999999999999999999999999999987766555544433
No 10
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.53 E-value=1.6e-13 Score=137.06 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=127.5
Q ss_pred CCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceee
Q 004712 528 STYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAF 606 (734)
Q Consensus 528 ge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell 606 (734)
|+.|+++||+++.+|+|.+|.|+++.. .+|++.+ +.++++|++||+.+++ ...+ .++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 789999999999999999999999764 5688877 7899999999998763 2221 1135689999999999
Q ss_pred EeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhHhhhhcccccCCCCCCCc
Q 004712 607 ALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSY 686 (734)
Q Consensus 607 ~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~ 686 (734)
.+++++|++++.++|.+....++.. +++.+.....+.........+|++..++..++..+...+++.......|+.
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l----~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~~t~~ 147 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGL----SSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQRGVTIDLRLSHQ 147 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCeEEecCCCCHH
Confidence 9999999999999998877666554 445555666666667778888999888888776654333344455678999
Q ss_pred chhhhHHHhHHHHHh
Q 004712 687 SIGATFLATRFAANA 701 (734)
Q Consensus 687 ~l~~~i~~sr~a~~~ 701 (734)
++|+.++++|...+-
T Consensus 148 ~iA~~lG~tretvsR 162 (193)
T TIGR03697 148 AIAEAIGSTRVTITR 162 (193)
T ss_pred HHHHHhCCcHHHHHH
Confidence 999999999987653
No 11
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.53 E-value=1e-13 Score=142.38 Aligned_cols=170 Identities=16% Similarity=0.111 Sum_probs=123.3
Q ss_pred HHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCC
Q 004712 513 LDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLP 591 (734)
Q Consensus 513 l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p 591 (734)
..+|.+..+.+.|++|++|+.+||+++++|||.+|.|+++.. .+|++.+ +.++.+|++||+..++ ...+
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~~~----- 93 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DKDH----- 93 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cCCC-----
Confidence 345777889999999999999999999999999999999765 4788877 7899999999998763 3333
Q ss_pred CcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhHhh
Q 004712 592 SSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKEEEEEE 671 (734)
Q Consensus 592 ~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~~aeer~~ 671 (734)
++.+++|+++|+++.+++++|..++.++|.+....++...+ +.........+........|++..++..++.
T Consensus 94 -~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~Rla~~L~~~~~~--- 165 (226)
T PRK10402 94 -ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSH----KNYRNIVSLTQNQSFPLENRLAAFILLTQEG--- 165 (226)
T ss_pred -CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH----HHHHHHHHHHHhccChHHHHHHHHHHhcccC---
Confidence 67899999999999999999999999999877655444443 2222222222222224556666665533211
Q ss_pred hhcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 672 ASEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 672 ~~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
+ ....++.++|..++++|.+.+ ++..+++
T Consensus 166 ----~---~~~~t~~~lA~~lG~sretvsR~L~~L~~ 195 (226)
T PRK10402 166 ----D---LYHEKHTQAAEYLGVSYRHLLYVLAQFIQ 195 (226)
T ss_pred ----C---cccchHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 1 113477899999999888754 3444433
No 12
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.48 E-value=6.5e-13 Score=136.81 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=131.6
Q ss_pred HHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCc
Q 004712 515 AICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSS 593 (734)
Q Consensus 515 ~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s 593 (734)
.++.....+.|++|++|+.+||+++++|||.+|.|+++.. .+|++.+ +.++.+|++||+.. .. ++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~----~~--------~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES----GS--------TH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC----CC--------cC
Confidence 4556678899999999999999999999999999999764 4788876 78899999999532 11 14
Q ss_pred ceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhHhhhh
Q 004712 594 TRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKEEEEEEAS 673 (734)
Q Consensus 594 t~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~~aeer~~~~ 673 (734)
..+++|+++|+++.|++++|+.++.++|.+....++.+.+ +.+.....+..........|++..++..+++.+.
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~-- 172 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAG----GLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGG-- 172 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--
Confidence 6799999999999999999999999999888876666554 3444444445555566777888887777654432
Q ss_pred cccccCCCCCCCcchhhhHHHhHHH-HHhhhhhhc
Q 004712 674 EGVQSSSTGGGSYSIGATFLATRFA-ANALRGVHR 707 (734)
Q Consensus 674 ~~~~~~~~~~~~~~l~~~i~~sr~a-~~~~~~~~~ 707 (734)
+.......++.++|+.++.+|.. +.+++.+++
T Consensus 173 --~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~ 205 (230)
T PRK09391 173 --AGMMALPMSRRDIADYLGLTIETVSRALSQLQD 205 (230)
T ss_pred --CCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22234567889999999999996 555666554
No 13
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.47 E-value=9.5e-13 Score=132.51 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=122.8
Q ss_pred cCceEEeCCCCEEEecCC--CCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcce
Q 004712 519 RLKPCLFTDSTYIVREGD--PVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTR 595 (734)
Q Consensus 519 ~l~~~~~~kge~I~~eGd--~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~ 595 (734)
.++.+.|++|++|+++|| +++.+|+|++|.|+++.. .+|++.+ +.++.+||+||+..++ .. + ++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~--~~--~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA--GA--E------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc--CC--C------CCc
Confidence 467889999999999999 779999999999999765 4789888 7899999999997542 12 2 467
Q ss_pred EEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhHhhhhcc
Q 004712 596 TVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKEEEEEEASEG 675 (734)
Q Consensus 596 tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~~aeer~~~~~~ 675 (734)
+++|+++|+++.|+.++| .|.+....++...+... .....+.........+|++..++..++..+....+
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~----~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~ 142 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLA----RAYESIYRLVGQRLKNRIAAALLELSDTPLATQED 142 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHH----HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCC
Confidence 899999999999999987 46555555555544333 33344445566777888888888877754321112
Q ss_pred cccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 676 VQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 676 ~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
+.......|+.++|+.++.+|...+ +++.+++
T Consensus 143 ~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~~ 175 (202)
T PRK13918 143 SGETMIYATHDELAAAVGSVRETVTKVIGELSR 175 (202)
T ss_pred CCeEEecCCHHHHHHHhCccHHHHHHHHHHHHH
Confidence 2233457789999999999999644 4444443
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.46 E-value=1.8e-12 Score=130.59 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=138.0
Q ss_pred cCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEeechhhh
Q 004712 501 RVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLT 579 (734)
Q Consensus 501 ~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~ 579 (734)
..+.|..++.+....+......+.+++|++|+.+||+++.+|+|.+|.++++... +|++.+ +.++++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELALL 81 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHHh
Confidence 4556666777788888889999999999999999999999999999999997754 688877 7899999999999874
Q ss_pred hhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 004712 580 WALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKK 659 (734)
Q Consensus 580 ~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~ 659 (734)
...+ ++.+++|+++|+++.+++++|.+++.+.|.+....++.+.+ +.+.-.........+....|..
T Consensus 82 ---~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~----~l~~~~~~~~~~~~~~~~~r~~ 148 (214)
T COG0664 82 ---GGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR----RLRQALERLSLLARKDVEERLA 148 (214)
T ss_pred ---cCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH----HHHHHHHHHHHHhhccHHHHHH
Confidence 2223 67899999999999999999999988878777655555544 4444444444446666677777
Q ss_pred HHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHH
Q 004712 660 MEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAA 699 (734)
Q Consensus 660 ~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~ 699 (734)
..++..+...+.+..++.......++..++...+.+|..-
T Consensus 149 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~v 188 (214)
T COG0664 149 RFLLNLGRRLGIATEDGILIPLPLTHKDLAEYLGLSRETV 188 (214)
T ss_pred HHHHHHhhccCCCCCCCcEEeccCCHHHHHHHhCCchhhH
Confidence 7777776655543322223345666777777776666553
No 15
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.43 E-value=9.7e-13 Score=130.75 Aligned_cols=193 Identities=22% Similarity=0.381 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEEeCHHHHHHHHHhh-hhHHHhHhhCcHhHHHHHhhhccCCCchhH
Q 004712 150 TLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRR-YFIIDFLAVLPLPQIVVWRFLLRSNGSDVL 228 (734)
Q Consensus 150 ~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~ 228 (734)
+++.+.+++|.+|+++++.+... . .++|+++ |.++|+++++|..........+..+.....
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----------~-------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----------K-------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLL 62 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----------G--------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCH
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----------H-------HHHHhcChhhcccccccccccccccccccccccccceE
Confidence 36889999999999999998542 1 6789987 677999999999655442211110001123
Q ss_pred HhHHHHHHHHHhhhhhhhHhhcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhhcCC
Q 004712 229 ATKQALFFIVLFQYFPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVT 308 (734)
Q Consensus 229 ~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c~~~ 308 (734)
...+++| +.|++|+.+..+.+.+..+... .........+++++++.|+.+|+++.+.......|+..
T Consensus 63 ~~~~~l~-------~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~----- 129 (200)
T PF00520_consen 63 RIFRLLR-------LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDP----- 129 (200)
T ss_dssp HHHHHHH-------HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred EEEEeec-------cccccccccccccccccccccc-cccccccccccccccccccccchhheeccccccccccc-----
Confidence 3333333 2344444444444443333222 22333455566677889999999998875433222100
Q ss_pred CCCcccccccCCCCccccccccccchhcccccCCCCCCCCCCCcchhhhhhhcCcccCchhHHHHHHHHHHHhHhccccc
Q 004712 309 ANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLG 388 (734)
Q Consensus 309 ~~c~~~~l~~~~~~~~~~~sW~~~~~~~~~~~c~~~~~~~~f~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlttvG 388 (734)
.+. +.+ .....+.++.|..|+||+++++|+.|
T Consensus 130 -------------------~~~--------------~~~---------------~~~~~~~f~~~~~s~~~~~~~~t~~~ 161 (200)
T PF00520_consen 130 -------------------TWD--------------SEN---------------DIYGYENFDSFGESLYWLFQTMTGEG 161 (200)
T ss_dssp --------------------SS---------------------------------SSTHHHHSSHHHHHHHHHHHHTTTT
T ss_pred -------------------ccc--------------ccc---------------ccccccccccccccccccccccccCC
Confidence 000 000 01144667889999999999999999
Q ss_pred CCCCccC-----ChhHHHHH-HHHHHHHHHHHHHHHHHH
Q 004712 389 QGLQTST-----FPGEVIFS-IALAIFGLILFALLIGNM 421 (734)
Q Consensus 389 ygd~~~~-----~~~E~~f~-i~i~i~G~~lfa~lig~~ 421 (734)
+|+..+. +..+.++. +++.+.+.++++++||+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 162 WGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999987 88999999 777777779999999986
No 16
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.40 E-value=6.4e-14 Score=144.19 Aligned_cols=282 Identities=21% Similarity=0.281 Sum_probs=153.1
Q ss_pred cccccCccccccccccccc-CccccccCcccccCCCeee--cCCChHHHHHhHHHHHHHHHHHHHhhhhcccccccCCCc
Q 004712 60 RGIRKGSEGLKSIGRSLRF-GVSRAVFPEDLKVSEKKIF--DPQDKLLLFCNKLFVISCILAVSVDPLFFYLPVINDSSK 136 (734)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~ii--~P~s~~~~~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~ 136 (734)
+-.+-|.+-+..+++..+. ....+..+++.-+.+.|.+ .|+|.--..=-.++.+++++..+++-+.-.+|...+.+.
T Consensus 142 rFyqlG~eame~FredEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd 221 (507)
T KOG1545|consen 142 RFYQLGDEAMERFREDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERD 221 (507)
T ss_pred HHHHhhHHHHHHHHhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhcc
Confidence 3345677788888876665 2334556655544444433 565544333222333333333333333335555532210
Q ss_pred c----------------c------ccCccchhhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEEeCHHHHHHH
Q 004712 137 C----------------L------GIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELVIDPAQIAKR 194 (734)
Q Consensus 137 ~----------------~------~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV~d~~~Ia~r 194 (734)
- . ..+....-.+.++++++-++|.+..+++|... |+ ....+++
T Consensus 222 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aC---Ps------------K~~Ff~n 286 (507)
T KOG1545|consen 222 LTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFAC---PS------------KATFFRN 286 (507)
T ss_pred ccccccccCCCcccCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcC---cc------------HHHHHHH
Confidence 0 0 01222344678999999999999999999874 33 1122333
Q ss_pred HHhhhhHHHhHhhCcHhHHHHHhhhccC-CC--chhHHhHHHHHHHHHhhhhhhhHhhcchhhhhhhhhhhHHHHHHHHH
Q 004712 195 YMRRYFIIDFLAVLPLPQIVVWRFLLRS-NG--SDVLATKQALFFIVLFQYFPRFFRILPLTSELKRTAGVFAETAWAGA 271 (734)
Q Consensus 195 Ylk~~F~iDlls~lPl~~i~~~~~~~~~-~~--~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~ 271 (734)
-+. +||++|++|+..-+........ .+ ....-...+||+|| |.|++||++|++.-+- .+++-+|.-+.+
T Consensus 287 imN---iIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViR----LVRVFRIFKLSRHSkG-LQILGqTl~aSm 358 (507)
T KOG1545|consen 287 IMN---IIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIR----LVRVFRIFKLSRHSKG-LQILGQTLRASM 358 (507)
T ss_pred HHH---HHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHH----HHHHhhheeeccccch-HHHHHHHHHHHH
Confidence 333 8999999999755543333221 11 12233345666665 4567777776654221 122223322221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhhcCCCCCcccccccCCCCccccccccccchhcccccCCCCCCCCCC
Q 004712 272 -AYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDDPPF 350 (734)
Q Consensus 272 -~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c~~~~~c~~~~l~~~~~~~~~~~sW~~~~~~~~~~~c~~~~~~~~f 350 (734)
-.-|++|+|+ +|-+.+-.++ |++-. ++.+
T Consensus 359 rElgLLIFFlf---IgviLFsSav--------------------YFAEa------------------------de~~--- 388 (507)
T KOG1545|consen 359 RELGLLIFFLF---IGVILFSSAV--------------------YFAEA------------------------DEPE--- 388 (507)
T ss_pred HHHHHHHHHHH---HHHHHHhcee--------------------eeeec------------------------CCCc---
Confidence 1122333322 2222222221 22110 0011
Q ss_pred CcchhhhhhhcCcccCchhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004712 351 DFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 430 (734)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 430 (734)
+-+...-.+||||++|||||||||..|.|.+.+++..++++.|++-.|+-+..+.+-......
T Consensus 389 -----------------S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYh 451 (507)
T KOG1545|consen 389 -----------------SHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 451 (507)
T ss_pred -----------------cCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceee
Confidence 111222347999999999999999999999999999999999999888876655444433333
Q ss_pred H
Q 004712 431 R 431 (734)
Q Consensus 431 ~ 431 (734)
|
T Consensus 452 r 452 (507)
T KOG1545|consen 452 R 452 (507)
T ss_pred c
Confidence 3
No 17
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.38 E-value=4.7e-12 Score=113.59 Aligned_cols=111 Identities=30% Similarity=0.550 Sum_probs=97.5
Q ss_pred ccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEeechhhhhhc
Q 004712 504 LFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWAL 582 (734)
Q Consensus 504 ~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l 582 (734)
+|..++++.+..++..++.+.+.+|++|+.+|++.+.+|||.+|.++++..+ +|++.+ +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4788999999999999999999999999999999999999999999997654 566666 7899999999998763
Q ss_pred CCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHH
Q 004712 583 DPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 625 (734)
Q Consensus 583 ~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~ 625 (734)
...+ +..+++|.++|+++.|+.++|.+++.++|.+..
T Consensus 76 ~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 2222 577999999999999999999999999996544
No 18
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.36 E-value=1.7e-11 Score=110.54 Aligned_cols=114 Identities=25% Similarity=0.395 Sum_probs=98.4
Q ss_pred ccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEeechhhhhhc
Q 004712 504 LFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWAL 582 (734)
Q Consensus 504 ~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l 582 (734)
+|.+++++.+++++..++.+.+++|++|+++|++++++|||.+|.++++..+ +|++.. +..+.+|++||+..++ ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~-~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL-TN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc-cC
Confidence 4788999999999999999999999999999999999999999999997654 566666 7899999999999863 11
Q ss_pred CCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHH
Q 004712 583 DPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSR 626 (734)
Q Consensus 583 ~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~ 626 (734)
.+.+ +..+++|.++|+++.++.+++.....++|.+..+
T Consensus 78 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 115 (120)
T smart00100 78 SRRA------ASATAVALELATLLRIDFRDFLQLLQENPQLLLE 115 (120)
T ss_pred CCcc------cceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHH
Confidence 2222 6789999999999999999999999999966543
No 19
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.32 E-value=9.8e-12 Score=107.54 Aligned_cols=90 Identities=28% Similarity=0.385 Sum_probs=77.9
Q ss_pred eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEe
Q 004712 522 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 600 (734)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Al 600 (734)
.+.|++|++|+++|++++++|||++|.++++..+ +|+..+ +..+++|++||+..++.. .+ +..+++|.
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~---~~------~~~~~~a~ 69 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIELLTG---KP------SPFTVIAL 69 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHHHHT---SB------BSSEEEES
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceeecCC---Cc------cEEEEEEc
Confidence 3689999999999999999999999999997765 455544 789999999999987422 23 67899999
Q ss_pred ccceeeEeCHHHHHHHHHHhHH
Q 004712 601 KEVEAFALMAEELKFVASQFRR 622 (734)
Q Consensus 601 t~~ell~L~~~df~~l~~~~P~ 622 (734)
++|+++.|++++|.++++++|+
T Consensus 70 ~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 70 TDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SSEEEEEEEHHHHHHHHHHSHH
T ss_pred cCEEEEEEeHHHHHHHHHhCcC
Confidence 9999999999999999999993
No 20
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.15 E-value=7.8e-11 Score=127.32 Aligned_cols=131 Identities=27% Similarity=0.431 Sum_probs=111.2
Q ss_pred HHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEe
Q 004712 494 LCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 573 (734)
Q Consensus 494 l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 573 (734)
-+..+|+.+|+|.+++++.+..|++.++...|..|++|+++|+.++.+|+|.+|.|.+...+++.+.-..+..+..||+|
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~F 348 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYF 348 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchh
Confidence 45688999999999999999999999999999999999999999999999999999998766653333338899999999
Q ss_pred echhhhhhcCCCCCCCCCCcceEEEEecc-ceeeEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 004712 574 GEELLTWALDPKSGVNLPSSTRTVRALKE-VEAFALMAEELKFVASQFRRLHSRQVQHTFR 633 (734)
Q Consensus 574 Ge~~l~~~l~~~~~~~~p~st~tv~Alt~-~ell~L~~~df~~l~~~~P~l~~~~l~~~~r 633 (734)
||-+++ .+. .|++++.|..+ +++++|+++.|..++...-++..+......|
T Consensus 349 GE~al~--~ed-------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r 400 (732)
T KOG0614|consen 349 GERALL--GED-------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEER 400 (732)
T ss_pred hHHHhh--ccC-------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhh
Confidence 999884 211 27889999987 9999999999999998888776654444443
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.11 E-value=5.4e-10 Score=125.05 Aligned_cols=113 Identities=26% Similarity=0.393 Sum_probs=98.0
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeec
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 575 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 575 (734)
.+.++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+.+.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456789999999999999999999999999999999999999999999999999997765433544 788999999997
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhH
Q 004712 576 ELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFR 621 (734)
Q Consensus 576 ~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P 621 (734)
. + ...+ +..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l----~~~~------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SGSV------HSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CCCC------cccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 3 2222 67899999999999999999998877655
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.06 E-value=2.7e-09 Score=117.35 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=102.7
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeec
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 575 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 575 (734)
.+++.+.|.|..++++++++|...+....|.|||.|+..|.+.+++|+|.+|.|+++.. +|+ . +..+.+||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~-~g~--v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSD-GGE--V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcC-CCe--e--eeeeccCccccc
Confidence 56788999999999999999999999999999999999999999999999999998764 344 2 789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHH
Q 004712 576 ELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSR 626 (734)
Q Consensus 576 ~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~ 626 (734)
.+++....+ ..++.|.+|+.++.|+++.|.+++.++|.+..-
T Consensus 81 ~~l~~~~~~---------~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~f 122 (610)
T COG2905 81 SSLFTELNK---------QRYMAAEEDSLCYLLPKSVFMQLMEENPEFADF 122 (610)
T ss_pred hhhcccCCC---------cceeEeeccceEEecCHHHHHHHHHhCcHHHHH
Confidence 988533322 347888899999999999999999999987653
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.1e-09 Score=119.15 Aligned_cols=89 Identities=25% Similarity=0.414 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 004712 369 FFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHH 448 (734)
Q Consensus 369 ~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~ 448 (734)
-+..|-.++||++.|+||+||||.+|.|...++.+..+.++|+.+||+--|.+++=+.-.- .++.|+ ++|-+.
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~RQ-----KHf~rr 338 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHRQ-----KHFNRR 338 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHHH-----HHHHhh
Confidence 3467888999999999999999999999999999999999999999998888777653322 222232 467788
Q ss_pred CCCChhHHHHHHHHHH
Q 004712 449 RLLPPDLRERVRRYDQ 464 (734)
Q Consensus 449 ~~lp~~L~~rVr~y~~ 464 (734)
++.-..|.+-..+||.
T Consensus 339 r~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 339 RNPAASLIQCAWRYYA 354 (654)
T ss_pred cchHHHHHHHHHHHHh
Confidence 8999999999999885
No 24
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=98.99 E-value=7.5e-10 Score=119.87 Aligned_cols=115 Identities=21% Similarity=0.416 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCC
Q 004712 492 RHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGD 571 (734)
Q Consensus 492 ~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd 571 (734)
.++-.+.+....++.+++.+++.++..+|.+..|.+|++|++|||+++++|.+..|.+++.. +|+- +..+++|.
T Consensus 149 k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~~gt 222 (732)
T KOG0614|consen 149 KQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMGAGT 222 (732)
T ss_pred HHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccCCch
Confidence 45667788888999999999999999999999999999999999999999999999999875 3443 78999999
Q ss_pred EeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhH
Q 004712 572 FCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFR 621 (734)
Q Consensus 572 ~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P 621 (734)
.|||.++++.. + |+++|+|+|+|.+|+|.++-|+.++..--
T Consensus 223 vFGELAILync---t------RtAsV~alt~~~lWaidR~vFq~IM~~tg 263 (732)
T KOG0614|consen 223 VFGELAILYNC---T------RTASVRALTDVRLWAIDREVFQAIMMRTG 263 (732)
T ss_pred hhhHHHHHhCC---c------chhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999986443 3 78999999999999999999999987644
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=1.4e-09 Score=113.36 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=103.4
Q ss_pred HhCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCce
Q 004712 480 QSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRS 559 (734)
Q Consensus 480 ~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e 559 (734)
..++|.-..++. ...+.+++.-+|.+++++.+.++.+.+.++.++.|+.|+.+||.++.+|+|.+|.++++.. |+-
T Consensus 107 ~~~~pKd~e~~~--~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~ 182 (368)
T KOG1113|consen 107 RKYIPKDDETRR--RLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTY 182 (368)
T ss_pred hcCCCCCHHHHH--HHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeE
Confidence 344444433322 2357788889999999999999999999999999999999999999999999999999875 332
Q ss_pred eeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhH
Q 004712 560 GFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFR 621 (734)
Q Consensus 560 ~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P 621 (734)
+..+.+|..|||.++.+ . +++.+|+.|.+++.+|.|++..|..++-...
T Consensus 183 ----v~~~~~g~sFGElALmy---n------~PRaATv~a~t~~klWgldr~SFrrIi~~s~ 231 (368)
T KOG1113|consen 183 ----VTTYSPGGSFGELALMY---N------PPRAATVVAKSLKKLWGLDRTSFRRIIMKSC 231 (368)
T ss_pred ----EeeeCCCCchhhhHhhh---C------CCcccceeeccccceEEEeeceeEEEeeccc
Confidence 67899999999999853 2 2488999999999999999999987765544
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.88 E-value=1.5e-08 Score=86.09 Aligned_cols=55 Identities=25% Similarity=0.541 Sum_probs=49.1
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQ 426 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 426 (734)
.|..++||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.++
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677999999999999999999999999999999999999999999999998875
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=2e-08 Score=104.82 Aligned_cols=120 Identities=19% Similarity=0.318 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCC
Q 004712 491 KRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEG 570 (734)
Q Consensus 491 ~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G 570 (734)
++.|+.+.|+.+|++..++..+...+...+.++.|++|+.|+.+|++++.+|+|.+|.|.+....+|.+ + .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~----v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVE----V-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeE----E-Eechh
Confidence 456889999999999999999999999999999999999999999999999999999999865554521 4 89999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLH 624 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~ 624 (734)
|+|||.+++ ...| +.++|.|.++..+..++++.|+.|+....++.
T Consensus 309 dyfge~al~---~~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc~dil 353 (368)
T KOG1113|consen 309 DYFGELALL---KNLP------RAATVVAKGRLKCAKLDKPRFERLLGPCQDIL 353 (368)
T ss_pred hhcchHHHH---hhch------hhceeeccCCceeeeeChHHHHHHhhHHHHHH
Confidence 999999883 3344 78899999999999999999999998766543
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.65 E-value=1.4e-08 Score=110.37 Aligned_cols=136 Identities=20% Similarity=0.240 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q 004712 370 FSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHR 449 (734)
Q Consensus 370 ~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 449 (734)
.-.|..|+|+-++||+||||||+...+...++|.+|..+.|+.+||--+..+..++.+...-.-||+..- =-+|-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-----gkkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-----GKKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-----CCeeE
Confidence 3579999999999999999999999999999999999999999999999999999887665444443210 00011
Q ss_pred CC-ChhHHHHHHHHHHHHHHHhc-CCC-hHHHHHhCCcchHHHHHHHHHHHHHhcCccccc--CcHHHH
Q 004712 450 LL-PPDLRERVRRYDQYKWLETR-GVD-EENLVQSLPKDLRRDIKRHLCLALVRRVPLFEN--MDERLL 513 (734)
Q Consensus 450 ~l-p~~L~~rVr~y~~y~w~~~~-~~~-e~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~--ls~~~l 513 (734)
-+ ..-..+.|-.|++---.+.+ .+| |--+|...||+|.-+ -+++.-..++.+|++ |++-.+
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl 426 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDL 426 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhh
Confidence 11 11223445555543333333 344 345678899998765 345556677888864 555443
No 29
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.1e-08 Score=106.88 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=45.3
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALL----IGNMQTYL 425 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~l----ig~~~~~l 425 (734)
.-.+||+.++||||+||||..|.|...++|..++.+.|++..|+- +.|.+.+.
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred CcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 345899999999999999999999999999999999999888874 45555543
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.98 E-value=1.3e-05 Score=92.42 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=94.4
Q ss_pred HHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCC
Q 004712 512 LLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNL 590 (734)
Q Consensus 512 ~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~ 590 (734)
++..+-..+.-..+.+|+.++++||..+++|+|.+|.+|.... .+|+... +..++.||.+|+... +..++
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt~~~---- 570 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LTKQP---- 570 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hhcCC----
Confidence 5556666678899999999999999999999999999998664 4455445 689999999999876 34444
Q ss_pred CCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004712 591 PSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 635 (734)
Q Consensus 591 p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~y 635 (734)
+..|+.|+.++++..|+.--|..+..+||.+..+..+..++.+
T Consensus 571 --R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 --RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred --ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6779999999999999999999999999988877766666544
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.90 E-value=0.00018 Score=79.63 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=49.6
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 425 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 425 (734)
.+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999998877644
No 32
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.75 E-value=1.3e-05 Score=66.87 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=38.8
Q ss_pred ccccccCccc--ccCCCeeecCCChHHHHHhHHHHHHHHHHHHHhhhhccc
Q 004712 80 VSRAVFPEDL--KVSEKKIFDPQDKLLLFCNKLFVISCILAVSVDPLFFYL 128 (734)
Q Consensus 80 ~~~~~~~e~~--~~~~~~ii~P~s~~~~~W~~i~l~~~l~~~~~~Pl~~~~ 128 (734)
|.+++-.|.. .+...+||||.|+|+.+||.++++.++++++++|+.+.|
T Consensus 20 S~~ai~~E~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 20 SKKAIEKEKERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred cHHHHHHHHHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 3444433333 344578999999999999999999999999999998655
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.0034 Score=68.41 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 004712 369 FFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHH 448 (734)
Q Consensus 369 ~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~ 448 (734)
....|..++|....|..++||||+.|.|...+..+++..++|.++.|.+++.++--+. ...--+.+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999998875543 33334567788888
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 004712 449 RLLPPDLRERVRRYDQYKWL 468 (734)
Q Consensus 449 ~~lp~~L~~rVr~y~~y~w~ 468 (734)
.+|-.++++-..+=.+..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777776665
No 34
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.70 E-value=0.00018 Score=77.76 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHhcccccCCC--CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 371 SKYCYCLWWGLQNLSTLGQGL--QTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 425 (734)
Q Consensus 371 ~~Y~~slywal~tlttvGygd--~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 425 (734)
..+..+|++++.|+||+|||. ++|....-.++.++=+++|+++.|+++|-+-+=+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999998 5677888888889999999999999999876544
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.55 E-value=0.00048 Score=79.84 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=92.6
Q ss_pred HHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCc
Q 004712 515 AICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSS 593 (734)
Q Consensus 515 ~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s 593 (734)
+++.+++...+..|++|++.|++.+.+|.+.+|.+.++..+ +|++.. +..+.+|+.|-....+ ++..+....+..
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSi--Ld~l~~~ps~~~ 185 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSI--LDSLPGFPSLSR 185 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHH--HHhccCCCcccc
Confidence 44478888999999999999999999999999999987655 688877 7899999888765432 333332223457
Q ss_pred ceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 004712 594 TRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 632 (734)
Q Consensus 594 t~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~ 632 (734)
+..++|+++|.+..++.+.|..+...||+-..+.+|-.+
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvm 224 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVM 224 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHH
Confidence 888999999999999999999999999987777666654
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00057 Score=76.40 Aligned_cols=58 Identities=19% Similarity=0.413 Sum_probs=53.5
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 430 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 430 (734)
+..++|++.+++||+|||+++|.|...++++|+..++|+=++..++++++..+...-.
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999876544
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.99 E-value=0.03 Score=52.72 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=82.2
Q ss_pred cCcHHHHHHHHhc-CceEEeCCCCEEEecCC-CCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCC
Q 004712 507 NMDERLLDAICER-LKPCLFTDSTYIVREGD-PVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDP 584 (734)
Q Consensus 507 ~ls~~~l~~l~~~-l~~~~~~kge~I~~eGd-~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 584 (734)
+.+......|+.. .+.....+|+.-.-||. +.+.+-++++|++++... |+- +..+.|.+|...-.+. ...+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW~-s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEWE-SLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhhh-cccc
Confidence 4677788888777 67789999999988887 678999999999998653 432 7788888887765542 1111
Q ss_pred CCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHH
Q 004712 585 KSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRL 623 (734)
Q Consensus 585 ~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l 623 (734)
. ....-..|+.|.++|..+.-+++.++.++.+.|-+
T Consensus 87 s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L 122 (153)
T PF04831_consen 87 S---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFL 122 (153)
T ss_pred C---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHH
Confidence 1 11224689999999999999999999999999944
No 38
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.77 E-value=0.078 Score=53.14 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=72.6
Q ss_pred HHHHHHHhcCceEEeCCCCEE-EecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCC
Q 004712 511 RLLDAICERLKPCLFTDSTYI-VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVN 589 (734)
Q Consensus 511 ~~l~~l~~~l~~~~~~kge~I-~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~ 589 (734)
...+.+....++..+.+|..+ ..+....+.+++|.+|.|.+. ..+| -. +.+..+..+||-... ..+..
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll--~~t~~aP~IlGl~~~---~~~~~--- 81 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VL--IGITQAPYIMGLADG---LMKND--- 81 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eE--EEeccCCeEeecccc---cCCCC---
Confidence 345667777788899999997 444444467999999999994 3343 22 667888889996543 22222
Q ss_pred CCCcceEEEEeccceeeEeCHHHHHHHHHHhH
Q 004712 590 LPSSTRTVRALKEVEAFALMAEELKFVASQFR 621 (734)
Q Consensus 590 ~p~st~tv~Alt~~ell~L~~~df~~l~~~~P 621 (734)
....++|.++|+++.++.+++.++++++.
T Consensus 82 ---~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 ---IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred ---ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 34689999999999999999999999865
No 39
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.85 E-value=0.017 Score=65.17 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=87.2
Q ss_pred HHHHHHhcCcccccCcHHHHHHHHhcCceE-EeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCE
Q 004712 494 LCLALVRRVPLFENMDERLLDAICERLKPC-LFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDF 572 (734)
Q Consensus 494 l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~-~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~ 572 (734)
...+++.+.|.|.+|+-...+++|..|... .-..|.+|+..|+.-+..+.|+.|+|++.+.++.+ ..+.-|+.
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGnS 351 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGNS 351 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecccc
Confidence 346888999999999999999999988755 45679999999999999999999999998876554 36777889
Q ss_pred eechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhH
Q 004712 573 CGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFR 621 (734)
Q Consensus 573 fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P 621 (734)
||...- .+.... --.--.-+.||+...|..+|+-.++.+.-
T Consensus 352 FG~~PT---~dkqym-----~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 352 FGAEPT---PDKQYM-----IGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred cCCCCC---cchhhh-----hhhhheecccceEEEeehhhHHHHHHHHH
Confidence 996532 111110 00111346899999999999999886543
No 40
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.062 Score=57.74 Aligned_cols=58 Identities=16% Similarity=0.435 Sum_probs=44.3
Q ss_pred HHHHHHHHHhHhcccccCCCCcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTS--TFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLT 429 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~--~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 429 (734)
.+..+|-+++-|=+|+|||--.+ ..+.-++..++-+|+|+++-|+++|.|-.-+..-.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPk 171 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPK 171 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 34557778899999999997553 45566677777889999999999998876554433
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.065 Score=56.29 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=42.2
Q ss_pred HHHHHHHHhHhcccccCCCCccCCh-------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFP-------GEV-IFSIALAIFGLILFALLIGNMQTYLQSLT 429 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~-------~E~-~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 429 (734)
|+.|+|+.+.|+||+|+||.++.-. .++ .++.+.+++|+.+++-+++-+.--+..++
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7789999999999999999886433 333 56667788899888877766655444443
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.0064 Score=63.61 Aligned_cols=47 Identities=21% Similarity=0.409 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHH
Q 004712 371 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALL 417 (734)
Q Consensus 371 ~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~l 417 (734)
=++.-|||++.+.+||+|||-.+|.|.+.++|+|+..++|+-+--+.
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvm 125 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVM 125 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHH
Confidence 35677999999999999999999999999999999999997554433
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.23 E-value=12 Score=47.08 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=35.0
Q ss_pred CCChHHHHHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 004712 99 PQDKLLLFCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFR 168 (734)
Q Consensus 99 P~s~~~~~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~ 168 (734)
+.+.+...-+.++++.++|.++---..+.-........+-+| ...|.+++++.-++-+.=|++-|.
T Consensus 1170 t~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYF----KSfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1170 YEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYF----LSGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHh----ccchHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777776666666544333211000000011122 346777888777777777776554
No 44
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.62 E-value=1.5 Score=52.25 Aligned_cols=90 Identities=21% Similarity=0.388 Sum_probs=52.4
Q ss_pred ccCCCeeecCCChHHHHHhH---------HHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHH
Q 004712 90 KVSEKKIFDPQDKLLLFCNK---------LFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYL 160 (734)
Q Consensus 90 ~~~~~~ii~P~s~~~~~W~~---------i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~ 160 (734)
..|.+.+|.|+++|+..-.. ++++.++++.+.+-+. -|.+.. ...--+.+++-+.++.++|+
T Consensus 1100 ~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~~-------~s~EriFltlsnyIFtaIfV 1170 (1956)
T KOG2302|consen 1100 ELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIVE-------GSTERIFLTLSNYIFTAIFV 1170 (1956)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--cccccc-------CcceEEEEEecchHHHHHHH
Confidence 45667799999999865443 3444444444443332 111111 01112234455689999999
Q ss_pred HHHHHHhh-hceecCCCcccCCCeEEeCHHHHHHHHHhh-hhHHHhH
Q 004712 161 LHMALQFR-TAFIAPSSRVFGRGELVIDPAQIAKRYMRR-YFIIDFL 205 (734)
Q Consensus 161 ~di~l~F~-T~y~~~~s~~~~~G~lV~d~~~Ia~rYlk~-~F~iDll 205 (734)
+.+.++-. .|.+- |+ .-|+++ |=.+|.+
T Consensus 1171 ~Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1171 VEMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 99999966 35332 33 468876 7777754
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=94.06 E-value=0.14 Score=56.85 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=32.6
Q ss_pred HHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHH
Q 004712 374 CYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILF 414 (734)
Q Consensus 374 ~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lf 414 (734)
+.|+|+...|.+||||||..|......++.++++.+.+++.
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~i 259 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLI 259 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhcc
Confidence 44789999999999999999999888777766655555443
No 46
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=90.87 E-value=0.066 Score=59.72 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhHhcccccCCCCccCChhHH--------HHHHHHHHHHHHHHHHHHH
Q 004712 371 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEV--------IFSIALAIFGLILFALLIG 419 (734)
Q Consensus 371 ~~Y~~slywal~tlttvGygd~~~~~~~E~--------~f~i~i~i~G~~lfa~lig 419 (734)
--|+.|+|+++.++||+|+||+.|.+.... .+..+..++|...++.+.-
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 467889999999999999999999998755 6788888888888888773
No 47
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.67 E-value=0.5 Score=53.86 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=79.6
Q ss_pred CcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeee
Q 004712 483 PKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFF 562 (734)
Q Consensus 483 p~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~ 562 (734)
|+.|+.-.....-...+.+...|.++-...+.++|.......++...++++.||.+...|++++|.|-+. |.
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----gq---- 94 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----GQ---- 94 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----cc----
Confidence 4555555444444557788899999999999999999999999999999999999999999999998653 21
Q ss_pred eeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCH
Q 004712 563 NRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMA 610 (734)
Q Consensus 563 ~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~ 610 (734)
.+-|-..||.-. +.. ++.+.-.++++|.++++.
T Consensus 95 ---i~mp~~~fgkr~------g~~------r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 95 ---IYMPYGCFGKRT------GQN------RTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred ---eecCcccccccc------ccc------cccceeeecccceeeeec
Confidence 233444566432 111 677888889999988854
No 48
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.15 E-value=14 Score=48.01 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEEeCHHHHHHHHHhh-hhHHHhHhhC
Q 004712 145 AITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRR-YFIIDFLAVL 208 (734)
Q Consensus 145 ~~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~l 208 (734)
...+...+.++-.+|.+.++++... .|-.. |.++ |.++|++-+.
T Consensus 871 ~~~L~y~D~~Ft~iFt~Em~lK~ia-----------~Gf~~---------y~rn~w~~lDf~Vv~ 915 (1592)
T KOG2301|consen 871 NGILEYADYIFTYIFTFEMLLKWIA-----------YGFFF---------YFRNAWNWLDFVVVI 915 (1592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHH---------HHhhHHhhhhHHHhh
Confidence 4567788999999999999999765 12211 9988 9999998554
No 49
>COG4709 Predicted membrane protein [Function unknown]
Probab=72.35 E-value=18 Score=35.53 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHh--cCCChHHHHHhC--CcchHHHHHHHHHHHHHhcCcccccCcHH
Q 004712 438 KRRDSEQWMHHRLLPPDLRERVRRYDQYKWLET--RGVDEENLVQSL--PKDLRRDIKRHLCLALVRRVPLFENMDER 511 (734)
Q Consensus 438 k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~--~~~~e~~ll~~L--p~~Lr~~I~~~l~~~ll~~v~~F~~ls~~ 511 (734)
-++++++|++ .+|++.+..+..||+-.+.+. .|.+|+++..+| |+++-.|+..+.-.+-.+.-|-+.+....
T Consensus 6 fL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 6 FLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 3456777776 799999999999998777755 477899999988 56777887777666666666666655553
No 50
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.82 E-value=3.1e+02 Score=35.15 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhHHHhHhhCcHhHHHHHhhhccC-C-Cch-hHHhHHHHHHHHHhhhhhhhHhhcchhhhhhh
Q 004712 189 AQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRS-N-GSD-VLATKQALFFIVLFQYFPRFFRILPLTSELKR 258 (734)
Q Consensus 189 ~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~-~-~~~-~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~ 258 (734)
++++--+-.-|+.+|+++++-|..=++.-..|.. . ... ++....++. -.||+.++.+.+.+--
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~-------t~rLl~~f~V~~~lGP 918 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILF-------TLRLLHYFTVSKQLGP 918 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHH-------HHHHhhheeeccccCc
Confidence 3444333345999999999877544444444411 1 111 111112221 4578888877776543
No 51
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=67.49 E-value=8.1 Score=31.05 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=32.8
Q ss_pred EEeCCCCEEEecCCCCC-EEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 523 CLFTDSTYIVREGDPVD-EMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 523 ~~~~kge~I~~eGd~~~-~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
..++||+..-..-.+.. ++++|++|.+.+. .+ |+ ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-~~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-GE-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-TE-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-cE-----EeEccCCEEEE
Confidence 46778886666555666 9999999999887 33 33 46789998763
No 52
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.14 E-value=2.9e+02 Score=33.39 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=56.3
Q ss_pred ccccCCCCccCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHhCCCChhHHH
Q 004712 385 STLGQGLQTSTF------PGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRL-EEMRIKRRDSEQWMHHRLLPPDLRE 457 (734)
Q Consensus 385 ttvGygd~~~~~------~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~lp~~L~~ 457 (734)
.|+|+||..... .+-++|.++..+..++++-.+|+.|++......... ++|+.+.-.+ --|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 478999876433 356778888888889999999999999988877666 7777654433 45667899999888
Q ss_pred HHH
Q 004712 458 RVR 460 (734)
Q Consensus 458 rVr 460 (734)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 833
No 53
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=64.60 E-value=33 Score=33.74 Aligned_cols=56 Identities=25% Similarity=0.463 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHh--cCCChHHHHHhC--CcchHHHHHHHH
Q 004712 437 IKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLET--RGVDEENLVQSL--PKDLRRDIKRHL 494 (734)
Q Consensus 437 ~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~--~~~~e~~ll~~L--p~~Lr~~I~~~l 494 (734)
+=+++++++++ ++|++-++.+.+||+-...+. .|.+|+++.++| |+++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 34567788887 599999999999998877753 467899999997 667777766543
No 54
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.90 E-value=38 Score=40.62 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=33.4
Q ss_pred HhCCcchHHHHHHHHHHHHHh-----cCcccccCcHHHHHHHHhcCc
Q 004712 480 QSLPKDLRRDIKRHLCLALVR-----RVPLFENMDERLLDAICERLK 521 (734)
Q Consensus 480 ~~Lp~~Lr~~I~~~l~~~ll~-----~v~~F~~ls~~~l~~l~~~l~ 521 (734)
++||++||+.|..+....... .-.++++++++....|+.++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 369999999999998876544 334678899999888888873
No 55
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=61.60 E-value=3.9e+02 Score=32.98 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHHHHHHH
Q 004712 449 RLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLC 495 (734)
Q Consensus 449 ~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~ 495 (734)
.+||+.|+..|..+...... ..-.+++.++++...++...+.
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~ 398 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMK 398 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhh
Confidence 37899999999887654332 2335778888888777776653
No 56
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=61.38 E-value=39 Score=31.28 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=42.2
Q ss_pred ceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEe
Q 004712 521 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 600 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Al 600 (734)
....++||..+-.--....++++|++|.+.+...++|+ ...+++||.+---+ . ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~----~----------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDK----H----------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECC----C----------CcEEEEcC
Confidence 34577888644322112247999999999876333344 46899999876322 1 12345555
Q ss_pred ccceeeEe
Q 004712 601 KEVEAFAL 608 (734)
Q Consensus 601 t~~ell~L 608 (734)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 77777665
No 57
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=59.26 E-value=23 Score=34.23 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=40.0
Q ss_pred EecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHH
Q 004712 532 VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAE 611 (734)
Q Consensus 532 ~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~ 611 (734)
+... ..++++++++|.+.+-..++|+-. ...+++||+|=- |.. ...+-++.++|.+++|.++
T Consensus 43 ~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flv--------P~g------vpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLL--------PPH------VPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEe--------CCC------CCcccccCCCcEEEEEEeC
Confidence 4443 379999999999999766666422 468999998742 211 1223344567777777654
No 58
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=58.80 E-value=4.1e+02 Score=32.29 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHH
Q 004712 396 FPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIR-LEEMRIKRRD 441 (734)
Q Consensus 396 ~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~-~~e~~~k~~~ 441 (734)
..+-.+|.++..+.-+++.-++|+.|....+..... .++|+-.+-.
T Consensus 586 ~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~~ 632 (743)
T TIGR00870 586 FVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRAK 632 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 356677777788888888888888888888876544 4566554443
No 59
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=56.90 E-value=14 Score=33.30 Aligned_cols=44 Identities=30% Similarity=0.578 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHHHHHHHh----------cCCChHHHHHhCCcchHHHHHHH
Q 004712 450 LLPPDLRERVRRYDQYKWLET----------RGVDEENLVQSLPKDLRRDIKRH 493 (734)
Q Consensus 450 ~lp~~L~~rVr~y~~y~w~~~----------~~~~e~~ll~~Lp~~Lr~~I~~~ 493 (734)
.||+++|..|...+.-.-... ...|...++..||++||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 589999999999886543321 23456789999999999999764
No 60
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=55.17 E-value=14 Score=34.47 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004712 368 KFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMH 447 (734)
Q Consensus 368 ~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~ 447 (734)
........++|+.+.++.. +-++..|.+...+++.+++.++++++.+...|++.+++..... ...++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHH
Confidence 3445677788888877776 3356889999999999999999999999999999999864432 222444555544
Q ss_pred hC
Q 004712 448 HR 449 (734)
Q Consensus 448 ~~ 449 (734)
+.
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 61
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=52.93 E-value=62 Score=25.55 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=25.6
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Q 004712 397 PGEVIFSI---ALAIFGLILFALLIGNMQTYLQSLTI---RLEEMRIKRRDSEQWMH 447 (734)
Q Consensus 397 ~~E~~f~i---~i~i~G~~lfa~lig~~~~~l~~~~~---~~~e~~~k~~~~~~~m~ 447 (734)
.+..+|.+ .+.+++.+.|+. -|-.++++.+. ...++.+|++.+-+-+.
T Consensus 3 i~~~Iy~~~Vi~l~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 3 IGDLIYYILVIILIVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 34455555 333444444444 34445554332 22368888888877654
No 62
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.60 E-value=6.2e+02 Score=31.65 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHHHHhhhhcccccccCCCcccccCc--cchhhHHHHHHHHHHHHHHHHHHHhhh-cee
Q 004712 107 CNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDR--KLAITATTLRTIVDVFYLLHMALQFRT-AFI 172 (734)
Q Consensus 107 W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~f~~di~l~F~T-~y~ 172 (734)
.+.+-++.++++.+.+-+| - .|-.+|- .--..+.+++-++-+||.+.|+++... |.+
T Consensus 81 fe~vsmlvillncvtlgmf--r-------pced~~c~s~rc~ilqafddfifaffavemv~kmvalgif 140 (1956)
T KOG2302|consen 81 FECVSMLVILLNCVTLGMF--R-------PCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIF 140 (1956)
T ss_pred HHHHHHHHHHHhhhhhccc--c-------cchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555555566665544333 1 2333322 112467789999999999999999874 543
No 63
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=48.79 E-value=37 Score=33.34 Aligned_cols=60 Identities=15% Similarity=0.318 Sum_probs=41.0
Q ss_pred CCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHH
Q 004712 536 DPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEE 612 (734)
Q Consensus 536 d~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~d 612 (734)
++.++++++++|.+.+...++|+-. ...+++||+|= -|. +.|. +-++-++|..+.|.+..
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl--------lP~---gvpH---sP~r~~~tv~LviE~~r 111 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL--------LPP---HVPH---SPQREAGSIGLVIERKR 111 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE--------eCC---CCCc---CCccCCCeEEEEEEeCC
Confidence 5678999999999998776666422 46799999873 221 1222 33446888888887654
No 64
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=47.28 E-value=4.3e+02 Score=29.68 Aligned_cols=20 Identities=15% Similarity=0.496 Sum_probs=14.4
Q ss_pred HHHHHHHHhh-hhHHHhHhhC
Q 004712 189 AQIAKRYMRR-YFIIDFLAVL 208 (734)
Q Consensus 189 ~~Ia~rYlk~-~F~iDlls~l 208 (734)
++..++|+++ |-++|++.++
T Consensus 233 ~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 233 RREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHhhhHHhhhcCcHHHHHHHH
Confidence 3444789987 8888988655
No 65
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.24 E-value=2.5e+02 Score=37.16 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhh-ceecCCCcccCCCeEEeCHHHHHHHHHhh-hhHHHhHhhC
Q 004712 144 LAITATTLRTIVDVFYLLHMALQFRT-AFIAPSSRVFGRGELVIDPAQIAKRYMRR-YFIIDFLAVL 208 (734)
Q Consensus 144 ~~~~~~~~~~~~d~~f~~di~l~F~T-~y~~~~s~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~l 208 (734)
....+.+.+.++-.+|.+++.++... ++ +.|.++ |.++|.+-+.
T Consensus 471 ~~~~l~~~~~vF~~lF~~Em~~ki~al~~---------------------~~yF~~~~n~fD~~iv~ 516 (1592)
T KOG2301|consen 471 RNYLLYLGNVVFTGLFTVEMILKIYALGP---------------------RNYFRRGWNIFDLIIVL 516 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCc---------------------HHHHhhhcchheEEEEe
Confidence 34566777888888888888887543 22 357765 7889988777
No 66
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=42.86 E-value=70 Score=37.12 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=42.8
Q ss_pred HHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 374 CYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQ 426 (734)
Q Consensus 374 ~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 426 (734)
-.++||+-..|..-|-|.-+|.+..-+++.++++=+.+++-|...+|+++.|.
T Consensus 615 ssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 615 SSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 34677776667767778889999999999999988888888888888887763
No 67
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=41.90 E-value=1.1e+02 Score=33.77 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004712 368 KFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLT 429 (734)
Q Consensus 368 ~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 429 (734)
...--|+.+|-+++..+.+++-++....-..-..+++++.++++++|-+.|..+...+|--+
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34566778888888888877766653333333888889999999999999999988876444
No 68
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=40.49 E-value=97 Score=31.07 Aligned_cols=58 Identities=22% Similarity=0.428 Sum_probs=39.8
Q ss_pred hCCcchHHHHHHHHHHHHHhcCccc-ccCcHHHHHHHHhcCceEE--eCCCCEEEecCCCCC
Q 004712 481 SLPKDLRRDIKRHLCLALVRRVPLF-ENMDERLLDAICERLKPCL--FTDSTYIVREGDPVD 539 (734)
Q Consensus 481 ~Lp~~Lr~~I~~~l~~~ll~~v~~F-~~ls~~~l~~l~~~l~~~~--~~kge~I~~eGd~~~ 539 (734)
.+|++ ...+...+...++.---.| ...++...++..+...+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 44555 3334444444444333333 3577888889999999998 999999999999765
No 69
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=40.10 E-value=54 Score=27.13 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=28.2
Q ss_pred eCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 525 FTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 525 ~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
..||..-..- ..+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 14 ~~pg~~~~~~--~~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPY--PEDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEE--SSEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeC--CCCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 3455543332 238899999999987643 555 45789999874
No 70
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=40.06 E-value=76 Score=29.84 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=37.5
Q ss_pred CceEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEeec
Q 004712 520 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGE 575 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe 575 (734)
+....+.||...-..-.+ .+++++|++|...+...+ +|++.. ...+++||.+--
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEE
Confidence 445577888776544433 578999999999986644 344444 578999997753
No 71
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=39.51 E-value=4.1e+02 Score=32.66 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=36.2
Q ss_pred HHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 377 LWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 425 (734)
Q Consensus 377 lywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 425 (734)
+-||+.-=-||- -..|....-++.+.+++++++++.|.-.+|+++.+
T Consensus 616 llwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfM 662 (1258)
T KOG1053|consen 616 LLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFM 662 (1258)
T ss_pred HHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457776433332 23467788999999999999999999999998764
No 72
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=38.20 E-value=34 Score=39.29 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=52.5
Q ss_pred HHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q 004712 375 YCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHR 449 (734)
Q Consensus 375 ~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 449 (734)
.|+|+++.....-| .|+.|.....++..-++-++.+++.+.-.+|+++.|. .|.|..-+..++..-++.
T Consensus 598 NsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQt 666 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQT 666 (897)
T ss_pred HHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhcc
Confidence 48999999998877 6999999999999999999988888888888888774 344444444444444433
No 73
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.73 E-value=8.4e+02 Score=29.82 Aligned_cols=73 Identities=27% Similarity=0.451 Sum_probs=38.7
Q ss_pred HHHHHHHhHhcccccCCCCc-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHH
Q 004712 374 CYCLWWGLQNLSTLGQGLQT-----STFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI-RLEEMRIKRRDSEQWMH 447 (734)
Q Consensus 374 ~~slywal~tlttvGygd~~-----~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~-~~~e~~~k~~~~~~~m~ 447 (734)
+.+++|++-.++-++-.++. ..+.++.+|.+--++.=+++.-.+|+.|.+-.|.+.. ...||+ -...+-||+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK--FARAKLw~s 632 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK--FARAKLWMS 632 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH--HHHHHHHHH
Confidence 45789998777665543333 2234444555444444455555666666655554432 223443 344555666
Q ss_pred h
Q 004712 448 H 448 (734)
Q Consensus 448 ~ 448 (734)
.
T Consensus 633 y 633 (822)
T KOG3609|consen 633 Y 633 (822)
T ss_pred H
Confidence 4
No 74
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=37.69 E-value=76 Score=29.23 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=34.6
Q ss_pred cCceEEeCCCCEE-EecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEe
Q 004712 519 RLKPCLFTDSTYI-VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 573 (734)
Q Consensus 519 ~l~~~~~~kge~I-~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 573 (734)
......+++|+-+ .+--...+++|+|++|...+... |+ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 3556788888775 44444579999999999988653 33 3568888865
No 75
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=31.74 E-value=1e+02 Score=28.27 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=39.2
Q ss_pred CceEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeech
Q 004712 520 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEE 576 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~ 576 (734)
+....+.||..+-.--.+ .+...+|++|.++.... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 446688888888777776 77999999999998765 44 4679999998754
No 76
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=31.16 E-value=71 Score=28.64 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHHHHHHHHHh---c-------C---CChHHHHHhCCcchHHHHHHHHHHH
Q 004712 450 LLPPDLRERVRRYDQYKWLET---R-------G---VDEENLVQSLPKDLRRDIKRHLCLA 497 (734)
Q Consensus 450 ~lp~~L~~rVr~y~~y~w~~~---~-------~---~~e~~ll~~Lp~~Lr~~I~~~l~~~ 497 (734)
-||+++|..|..-..-.-... + . --..++|..||+++|.+|..+-...
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999855443321100 0 0 0125899999999999998766543
No 77
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=28.88 E-value=2.5e+02 Score=21.09 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 004712 401 IFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDS 442 (734)
Q Consensus 401 ~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~ 442 (734)
.++.+..+..++....+...++++-.....+.+++|..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555566666666666666666777665554
No 78
>PLN03223 Polycystin cation channel protein; Provisional
Probab=27.98 E-value=1.5e+03 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004712 398 GEVIFSIALAIFGLILFALLIGNMQTYLQSL 428 (734)
Q Consensus 398 ~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 428 (734)
+-..|..+++++..++.-++|+.|..-++..
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777766666544
No 79
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=26.02 E-value=3.6e+02 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 004712 270 GAAYYLLLYMLASHVVGALWYLLAL 294 (734)
Q Consensus 270 ~~~~~ll~~~l~~H~~gc~wyll~~ 294 (734)
..+..++++++..++.++..+.-..
T Consensus 99 ~~~~~~~~~~~~~a~~~~~lf~~~~ 123 (200)
T PF00520_consen 99 KFILLLFIVLLFFACIGYQLFGGSD 123 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccchhheeccccc
Confidence 3455566666666777777777664
No 80
>PRK06771 hypothetical protein; Provisional
Probab=24.37 E-value=3.4e+02 Score=23.79 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004712 400 VIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRR 461 (734)
Q Consensus 400 ~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~ 461 (734)
.+..|.+.++|++ |+...+..+.+.+..+....+.+++.+.+.+..-...+.+.+++++
T Consensus 3 ~~ili~~~~~~~i---~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 3 FWMIIPIAIFGFI---YIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 3344444444433 4455555666667777778888877777766655553334444444
No 81
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=23.97 E-value=63 Score=25.51 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=16.3
Q ss_pred HHHHHhCCcchHHHHHHHH
Q 004712 476 ENLVQSLPKDLRRDIKRHL 494 (734)
Q Consensus 476 ~~ll~~Lp~~Lr~~I~~~l 494 (734)
-+++++||.+|++++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 3689999999999998765
No 82
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=23.02 E-value=1.8e+02 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHHHHHHh
Q 004712 404 IALAIFGLILFALLIGNMQTYLQSL-------------TIRLEEMRIKRRDSEQWMHH 448 (734)
Q Consensus 404 i~i~i~G~~lfa~lig~~~~~l~~~-------------~~~~~e~~~k~~~~~~~m~~ 448 (734)
+++.++|+.+||++++-+.+.-... ....++|+.+++...+.++.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 6788999999999998764322111 24678899998888866653
No 83
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.22 E-value=41 Score=31.20 Aligned_cols=13 Identities=54% Similarity=0.841 Sum_probs=9.8
Q ss_pred cCCCCCCCCCCCc
Q 004712 719 KLQKPPEPDFTAE 731 (734)
Q Consensus 719 ~~~~~~~~~~~~~ 731 (734)
+--|||||||+-.
T Consensus 61 L~i~pPEPd~~~~ 73 (165)
T COG4016 61 LDIKPPEPDFNYK 73 (165)
T ss_pred hCCCCCCCCcchh
Confidence 3478999999843
No 84
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.91 E-value=2.3e+02 Score=31.38 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=34.8
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.+|...-.--....++.+|++|.+++...+ +|+.. ...+++||.+-
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 344567777754322234568999999999987654 35532 24799999874
No 85
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.68 E-value=3.3e+02 Score=27.34 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Q 004712 409 FGLILFALLIGNMQTYLQSLTI---RLEEMRIKRRDSEQWMH 447 (734)
Q Consensus 409 ~G~~lfa~lig~~~~~l~~~~~---~~~e~~~k~~~~~~~m~ 447 (734)
+++++.|.++|-+.++++.... +.+++++.+++.++.++
T Consensus 48 lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 48 LVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777778777654 33445555555555444
No 86
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.66 E-value=1.8e+02 Score=20.27 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCC-----hhHHHHHHHHH
Q 004712 438 KRRDSEQWMHHRLLP-----PDLRERVRRYD 463 (734)
Q Consensus 438 k~~~~~~~m~~~~lp-----~~L~~rVr~y~ 463 (734)
+..++.++++.++|| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788999999998 57888888774
No 87
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=21.19 E-value=1.3e+03 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=24.0
Q ss_pred hHHHHHHH-HHHHhHhcccccCCCCccCChhHHHHHHHHHH
Q 004712 369 FFSKYCYC-LWWGLQNLSTLGQGLQTSTFPGEVIFSIALAI 408 (734)
Q Consensus 369 ~~~~Y~~s-lywal~tlttvGygd~~~~~~~E~~f~i~i~i 408 (734)
.+.....| ++|++. +|++......+.|..+-..
T Consensus 140 lw~~~vvS~lFW~fa-------ndi~t~~qakRfy~l~~~g 173 (472)
T TIGR00769 140 LWGSVVLSLLFWGFA-------NQITTIDEAKRFYALFGLG 173 (472)
T ss_pred HHHHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHH
Confidence 34556667 999997 5677777888888877654
No 88
>PRK11171 hypothetical protein; Provisional
Probab=21.08 E-value=2e+02 Score=30.22 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=37.7
Q ss_pred cCceEEeCCCCEEEe-cCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 519 RLKPCLFTDSTYIVR-EGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 519 ~l~~~~~~kge~I~~-eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
.+....++||..+-. +.....+.++|++|++++.. +|+ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 466788999988877 36667799999999998753 344 46799999764
No 89
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=20.57 E-value=3.1e+02 Score=23.33 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=42.7
Q ss_pred cCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEE
Q 004712 519 RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVR 598 (734)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~ 598 (734)
......+.||..+=.-...+.+..||++|.+.. ++| .+.+|+++=.-. -+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeCC--------------CCccccC
Confidence 345668888888877677788888999999862 222 347787754221 1566778
Q ss_pred EeccceeeE
Q 004712 599 ALKEVEAFA 607 (734)
Q Consensus 599 Alt~~ell~ 607 (734)
+-++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888875
No 90
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=20.55 E-value=4.1e+02 Score=26.49 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=32.1
Q ss_pred ceEEeCCCCEE---------EecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYI---------VREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I---------~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
-...+.||... +.+.....++|+|++|...+...+ +|. .. ...+++|+.+-
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~-~~--~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE-AR--WIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc-EE--EEEECCCCEEE
Confidence 34566777642 233333459999999999876543 232 11 46789998764
No 91
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=20.50 E-value=9.7e+02 Score=25.74 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=46.7
Q ss_pred hHhcccccCCCCccCChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004712 381 LQNLSTLGQGLQTSTFPGEVIFSIALAIFGL-ILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERV 459 (734)
Q Consensus 381 l~tlttvGygd~~~~~~~E~~f~i~i~i~G~-~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV 459 (734)
+..+++.|-+...| +++-++-.++. +..+|+.-.+..|.-+...-..+++-.-+++++-.++.+=+|+++.+=
T Consensus 165 ~~~lp~CG~~C~~~------Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskR 238 (349)
T COG4792 165 FLYLPGCGLYCALP------VVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKR 238 (349)
T ss_pred HhhccccccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHHH
Confidence 55666666444333 33333333333 366777767777765555556667766777887778788888877765
Q ss_pred HHH
Q 004712 460 RRY 462 (734)
Q Consensus 460 r~y 462 (734)
|++
T Consensus 239 Rq~ 241 (349)
T COG4792 239 RQL 241 (349)
T ss_pred HHH
Confidence 554
Done!