Query 004712
Match_columns 734
No_of_seqs 491 out of 3419
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 5.1E-33 1.7E-37 303.2 19.2 188 370-632 159-346 (355)
2 3ukn_A Novel protein similar t 100.0 1.9E-31 6.5E-36 268.9 13.4 203 422-638 1-203 (212)
3 2ptm_A Hyperpolarization-activ 100.0 4.4E-30 1.5E-34 256.1 21.7 189 427-630 2-190 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 1E-29 3.5E-34 254.4 21.6 189 426-630 2-190 (202)
5 1orq_C Potassium channel; volt 99.9 7.1E-21 2.4E-25 193.5 18.7 211 106-427 9-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 7.7E-19 2.6E-23 167.5 17.0 142 476-630 6-147 (160)
7 3d0s_A Transcriptional regulat 99.8 1.8E-18 6.1E-23 175.2 15.0 197 496-707 5-203 (227)
8 3e97_A Transcriptional regulat 99.8 9E-18 3.1E-22 170.5 18.6 193 496-706 5-200 (231)
9 2r9r_B Paddle chimera voltage 99.8 4.8E-18 1.6E-22 192.7 18.2 292 98-495 174-489 (514)
10 4ev0_A Transcription regulator 99.8 1.6E-17 5.6E-22 166.5 19.4 180 499-700 1-181 (216)
11 2gau_A Transcriptional regulat 99.8 1.1E-17 3.7E-22 170.0 16.9 191 501-707 14-206 (232)
12 3dn7_A Cyclic nucleotide bindi 99.8 7.1E-18 2.4E-22 166.5 15.1 179 495-699 5-185 (194)
13 3fx3_A Cyclic nucleotide-bindi 99.7 7.1E-18 2.4E-22 171.9 14.7 188 494-700 8-196 (237)
14 3gyd_A CNMP-BD protein, cyclic 99.7 2.5E-17 8.5E-22 162.4 17.6 158 474-642 12-174 (187)
15 3dv8_A Transcriptional regulat 99.7 3.3E-17 1.1E-21 164.7 18.6 188 497-706 3-194 (220)
16 2fmy_A COOA, carbon monoxide o 99.7 8.2E-18 2.8E-22 169.6 13.8 189 497-707 4-193 (220)
17 3dkw_A DNR protein; CRP-FNR, H 99.7 3.2E-17 1.1E-21 165.7 15.8 188 496-700 8-196 (227)
18 3iwz_A CAP-like, catabolite ac 99.7 6E-17 2.1E-21 164.0 16.7 196 496-707 10-213 (230)
19 3ocp_A PRKG1 protein; serine/t 99.7 4.9E-17 1.7E-21 151.6 12.0 130 481-625 7-136 (139)
20 1ft9_A Carbon monoxide oxidati 99.7 3E-17 1E-21 165.8 10.9 188 498-707 1-189 (222)
21 3mdp_A Cyclic nucleotide-bindi 99.7 1.2E-16 4.1E-21 148.8 13.6 133 497-638 6-140 (142)
22 3ryp_A Catabolite gene activat 99.7 1.9E-16 6.4E-21 158.0 15.5 190 503-707 2-193 (210)
23 3idb_B CAMP-dependent protein 99.7 8.8E-17 3E-21 153.9 12.2 127 487-624 28-154 (161)
24 1wgp_A Probable cyclic nucleot 99.7 2.2E-17 7.5E-22 153.4 7.0 129 497-625 6-134 (137)
25 2oz6_A Virulence factor regula 99.7 5E-16 1.7E-20 154.5 16.6 187 508-707 1-190 (207)
26 2pqq_A Putative transcriptiona 99.7 2.5E-16 8.5E-21 147.8 13.1 124 496-630 4-128 (149)
27 1zyb_A Transcription regulator 99.7 1.2E-16 4.1E-21 162.7 11.7 194 494-707 15-212 (232)
28 3kcc_A Catabolite gene activat 99.7 4.8E-16 1.6E-20 161.3 16.0 186 506-707 55-243 (260)
29 2z69_A DNR protein; beta barre 99.6 1.5E-15 5E-20 143.5 14.6 127 496-632 11-138 (154)
30 3e6c_C CPRK, cyclic nucleotide 99.6 7.2E-16 2.4E-20 158.7 12.0 189 499-705 11-201 (250)
31 1o5l_A Transcriptional regulat 99.6 1E-15 3.5E-20 153.6 12.5 184 502-706 4-189 (213)
32 3la7_A Global nitrogen regulat 99.6 3.6E-15 1.2E-19 152.9 16.7 185 510-707 30-219 (243)
33 2bgc_A PRFA; bacterial infecti 99.6 4.4E-15 1.5E-19 151.7 17.3 188 506-707 2-196 (238)
34 1vp6_A CNBD, cyclic-nucleotide 99.6 3E-15 1E-19 138.8 13.3 121 496-633 10-130 (138)
35 3pna_A CAMP-dependent protein 99.6 4.9E-15 1.7E-19 140.7 13.6 117 493-624 34-150 (154)
36 3shr_A CGMP-dependent protein 99.6 8.2E-15 2.8E-19 154.8 15.7 134 477-625 19-152 (299)
37 4ava_A Lysine acetyltransferas 99.5 3.1E-14 1E-18 152.8 15.2 127 496-635 12-139 (333)
38 2d93_A RAP guanine nucleotide 99.5 3.3E-15 1.1E-19 138.3 6.1 124 483-621 2-127 (134)
39 3shr_A CGMP-dependent protein 99.5 2.4E-14 8.3E-19 151.1 12.9 129 493-632 153-283 (299)
40 2qcs_B CAMP-dependent protein 99.5 2.2E-13 7.6E-18 142.9 16.9 127 493-630 153-281 (291)
41 2a9h_A Voltage-gated potassium 99.5 4.5E-14 1.5E-18 134.3 9.9 62 371-432 83-144 (155)
42 3of1_A CAMP-dependent protein 99.5 8.1E-14 2.8E-18 142.1 12.5 118 494-625 122-239 (246)
43 3tnp_B CAMP-dependent protein 99.5 1.5E-13 5.1E-18 152.5 15.3 126 488-624 136-261 (416)
44 3b02_A Transcriptional regulat 99.5 5.5E-14 1.9E-18 138.9 10.4 162 523-707 2-165 (195)
45 2qcs_B CAMP-dependent protein 99.5 2.2E-13 7.6E-18 142.9 15.6 126 492-632 34-159 (291)
46 3of1_A CAMP-dependent protein 99.5 1E-13 3.5E-18 141.3 11.9 117 495-626 5-121 (246)
47 3vou_A ION transport 2 domain 99.5 5.5E-13 1.9E-17 126.3 14.5 86 373-458 53-148 (148)
48 4din_B CAMP-dependent protein 99.5 1.4E-13 4.9E-18 150.9 11.8 129 493-632 244-374 (381)
49 4din_B CAMP-dependent protein 99.4 5.1E-13 1.7E-17 146.5 13.0 123 491-628 124-246 (381)
50 4h33_A LMO2059 protein; bilaye 99.4 2.1E-13 7.2E-18 127.3 8.1 92 373-464 44-135 (137)
51 3tnp_B CAMP-dependent protein 99.4 3.9E-13 1.3E-17 149.1 11.8 123 496-629 266-395 (416)
52 2zcw_A TTHA1359, transcription 99.4 3.5E-13 1.2E-17 133.7 8.8 168 516-707 1-172 (202)
53 1o7f_A CAMP-dependent RAP1 gua 99.4 1.9E-12 6.5E-17 145.5 14.1 135 481-627 26-163 (469)
54 2ih3_C Voltage-gated potassium 99.4 2.5E-12 8.4E-17 117.6 11.3 60 371-430 60-119 (122)
55 1o7f_A CAMP-dependent RAP1 gua 99.4 2E-12 6.9E-17 145.3 12.7 120 493-626 333-454 (469)
56 4f7z_A RAP guanine nucleotide 99.3 2.2E-11 7.5E-16 149.6 15.3 135 477-624 23-160 (999)
57 3eff_K Voltage-gated potassium 99.2 3E-11 1E-15 113.1 11.5 89 372-461 40-129 (139)
58 3cf6_E RAP guanine nucleotide 99.2 1.6E-11 5.4E-16 144.2 11.9 133 476-623 12-146 (694)
59 3rvy_A ION transport protein; 99.2 2.5E-10 8.5E-15 120.0 15.3 60 370-429 178-243 (285)
60 4f7z_A RAP guanine nucleotide 99.1 2.2E-10 7.4E-15 140.8 15.0 113 494-620 334-448 (999)
61 2q67_A Potassium channel prote 99.1 6.3E-10 2.1E-14 100.2 10.7 58 373-430 50-107 (114)
62 3ouf_A Potassium channel prote 99.0 1.3E-09 4.4E-14 95.2 11.2 56 373-428 33-88 (97)
63 2k1e_A Water soluble analogue 99.0 1.3E-10 4.3E-15 102.9 3.1 59 372-430 40-98 (103)
64 3ldc_A Calcium-gated potassium 98.9 5.3E-09 1.8E-13 88.3 11.0 53 373-425 29-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.8 1.9E-10 6.7E-15 110.8 -2.1 63 371-433 66-128 (166)
66 1xl4_A Inward rectifier potass 98.7 6.1E-08 2.1E-12 102.0 10.1 54 372-425 82-135 (301)
67 3um7_A Potassium channel subfa 98.6 8.3E-08 2.8E-12 100.7 10.4 57 372-428 115-171 (309)
68 1p7b_A Integral membrane chann 98.6 8.6E-08 2.9E-12 102.0 8.2 57 372-428 96-152 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.5 2.7E-07 9.2E-12 97.8 10.9 57 372-428 78-134 (321)
70 3sya_A G protein-activated inw 98.5 4E-07 1.4E-11 96.6 11.1 57 373-429 92-150 (340)
71 4gx0_A TRKA domain protein; me 98.3 2.1E-06 7.1E-11 98.7 12.4 54 373-426 52-106 (565)
72 3um7_A Potassium channel subfa 98.3 7.8E-07 2.7E-11 93.3 7.2 58 373-430 225-288 (309)
73 3ukm_A Potassium channel subfa 98.3 3.3E-06 1.1E-10 87.3 11.2 57 373-429 202-265 (280)
74 3ukm_A Potassium channel subfa 98.3 1.4E-06 4.8E-11 90.0 8.2 55 372-426 93-147 (280)
75 3spc_A Inward-rectifier K+ cha 98.2 3.7E-06 1.3E-10 89.4 11.3 57 371-427 93-151 (343)
76 4dxw_A Navrh, ION transport pr 98.0 7.4E-05 2.5E-09 75.3 15.0 75 106-210 13-88 (229)
77 1lnq_A MTHK channels, potassiu 97.9 6.4E-07 2.2E-11 96.0 -2.2 56 373-428 46-101 (336)
78 2kyh_A KVAP, voltage-gated pot 97.5 0.00032 1.1E-08 65.6 9.0 78 106-213 22-99 (147)
79 1ors_C Potassium channel; volt 97.0 0.00097 3.3E-08 61.2 6.8 78 106-213 7-84 (132)
80 3fjs_A Uncharacterized protein 70.9 14 0.00049 31.8 8.1 67 520-607 38-104 (114)
81 3rns_A Cupin 2 conserved barre 68.7 19 0.00065 35.3 9.4 68 520-608 39-106 (227)
82 2ozj_A Cupin 2, conserved barr 66.9 17 0.00059 30.9 7.7 65 523-608 43-107 (114)
83 3kg2_A Glutamate receptor 2; I 64.0 7.6 0.00026 45.7 6.3 56 371-427 562-617 (823)
84 1yhf_A Hypothetical protein SP 60.0 33 0.0011 28.9 8.3 68 520-608 42-109 (115)
85 2pfw_A Cupin 2, conserved barr 58.5 34 0.0012 28.9 8.1 68 520-608 36-103 (116)
86 3lwc_A Uncharacterized protein 58.1 25 0.00087 30.6 7.2 45 522-574 44-88 (119)
87 2kxw_B Sodium channel protein 56.4 10 0.00035 24.3 3.0 20 639-658 4-23 (27)
88 2l53_B CAM, voltage-gated sodi 53.5 14 0.00046 24.5 3.3 21 639-659 4-24 (31)
89 4e2g_A Cupin 2 conserved barre 50.4 45 0.0015 28.6 7.6 48 520-574 43-90 (126)
90 1o5u_A Novel thermotoga mariti 45.4 69 0.0024 26.9 7.7 47 520-574 33-79 (101)
91 2gu9_A Tetracenomycin polyketi 43.9 32 0.0011 28.7 5.4 48 520-574 23-73 (113)
92 1yfu_A 3-hydroxyanthranilate-3 42.9 30 0.001 32.5 5.3 35 537-574 54-88 (174)
93 1v70_A Probable antibiotics sy 42.9 39 0.0013 27.5 5.7 47 521-574 31-78 (105)
94 3rns_A Cupin 2 conserved barre 41.0 63 0.0022 31.4 7.7 68 520-608 155-223 (227)
95 3d82_A Cupin 2, conserved barr 38.3 70 0.0024 25.9 6.6 51 538-609 50-100 (102)
96 1dgw_A Canavalin; duplicated s 38.2 31 0.0011 32.4 4.7 51 520-574 43-94 (178)
97 4axo_A EUTQ, ethanolamine util 37.0 79 0.0027 28.9 7.1 31 537-574 83-113 (151)
98 3h8u_A Uncharacterized conserv 36.4 43 0.0015 28.8 5.1 49 520-574 41-90 (125)
99 2bnm_A Epoxidase; oxidoreducta 35.9 98 0.0033 28.9 8.0 49 523-574 122-173 (198)
100 3d0j_A Uncharacterized protein 35.6 89 0.0031 28.2 7.0 65 533-611 45-110 (140)
101 1zvf_A 3-hydroxyanthranilate 3 35.6 1E+02 0.0034 29.0 7.5 87 511-611 12-114 (176)
102 3ibm_A Cupin 2, conserved barr 34.0 48 0.0016 30.7 5.3 47 521-574 59-105 (167)
103 2q30_A Uncharacterized protein 32.8 1.6E+02 0.0056 23.9 8.2 68 521-608 36-105 (110)
104 2qnk_A 3-hydroxyanthranilate 3 30.8 1E+02 0.0036 31.1 7.3 59 536-611 49-107 (286)
105 1fi2_A Oxalate oxidase, germin 29.9 95 0.0033 29.4 6.8 53 520-574 74-130 (201)
106 2o1q_A Putative acetyl/propion 29.0 80 0.0027 28.4 5.7 50 520-574 46-95 (145)
107 1sfn_A Conserved hypothetical 29.0 1.6E+02 0.0055 28.9 8.5 65 522-609 54-118 (246)
108 3bcw_A Uncharacterized protein 28.7 44 0.0015 29.4 3.8 44 524-574 55-98 (123)
109 2b8m_A Hypothetical protein MJ 28.2 53 0.0018 27.8 4.2 45 523-574 32-77 (117)
110 3kgz_A Cupin 2 conserved barre 28.0 45 0.0015 30.6 3.9 45 523-574 49-93 (156)
111 2i45_A Hypothetical protein; n 27.9 62 0.0021 26.9 4.5 68 525-612 35-102 (107)
112 4i4a_A Similar to unknown prot 27.8 2.7E+02 0.0094 23.4 9.5 79 522-621 38-120 (128)
113 1vj2_A Novel manganese-contain 27.7 58 0.002 28.2 4.4 46 522-574 52-97 (126)
114 1o4t_A Putative oxalate decarb 27.2 63 0.0021 28.3 4.6 47 521-574 60-107 (133)
115 2f4p_A Hypothetical protein TM 27.1 87 0.003 28.0 5.7 48 521-574 51-98 (147)
116 2opk_A Hypothetical protein; p 27.1 57 0.002 27.8 4.2 34 536-574 51-84 (112)
117 3jzv_A Uncharacterized protein 27.0 45 0.0015 30.9 3.7 45 523-574 58-102 (166)
118 1lr5_A Auxin binding protein 1 26.8 61 0.0021 29.4 4.6 51 521-574 44-99 (163)
119 3i7d_A Sugar phosphate isomera 25.7 56 0.0019 30.0 4.1 47 521-574 46-94 (163)
120 2fqp_A Hypothetical protein BP 25.5 39 0.0013 27.8 2.7 49 521-574 21-70 (97)
121 1y9q_A Transcriptional regulat 25.3 92 0.0031 29.0 5.7 46 522-574 108-155 (192)
122 2pyt_A Ethanolamine utilizatio 24.6 63 0.0022 28.7 4.1 44 522-574 61-104 (133)
123 3es4_A Uncharacterized protein 24.4 81 0.0028 27.5 4.6 44 524-574 48-91 (116)
124 4b29_A Dimethylsulfoniopropion 24.0 1.1E+02 0.0038 29.8 5.9 45 524-574 138-182 (217)
125 4e2q_A Ureidoglycine aminohydr 23.9 1E+02 0.0035 31.0 5.9 70 521-610 73-142 (266)
126 2vpv_A Protein MIF2, MIF2P; nu 23.8 53 0.0018 30.6 3.5 45 523-574 93-139 (166)
127 2vqa_A SLL1358 protein, MNCA; 23.8 1.2E+02 0.004 31.5 6.7 52 520-574 54-107 (361)
128 1sfn_A Conserved hypothetical 23.5 91 0.0031 30.7 5.5 48 520-574 167-215 (246)
129 1j58_A YVRK protein; cupin, de 23.0 1.2E+02 0.004 32.0 6.6 52 520-574 81-133 (385)
130 3es1_A Cupin 2, conserved barr 23.0 79 0.0027 29.6 4.6 48 520-573 81-128 (172)
131 2vqa_A SLL1358 protein, MNCA; 21.9 1.5E+02 0.005 30.8 7.0 52 520-574 236-289 (361)
132 3h7j_A Bacilysin biosynthesis 21.8 95 0.0033 30.4 5.2 47 520-573 36-82 (243)
133 2q1z_B Anti-sigma factor CHRR, 21.7 1.3E+02 0.0043 28.6 5.9 65 519-608 126-192 (195)
134 3fz3_A Prunin; TREE NUT allerg 21.1 1.6E+02 0.0056 32.6 7.2 61 512-574 388-450 (531)
135 2oa2_A BH2720 protein; 1017534 21.0 1.3E+02 0.0043 26.8 5.5 51 522-574 47-99 (148)
136 3h7j_A Bacilysin biosynthesis 20.8 1.8E+02 0.0062 28.3 7.0 46 522-574 149-195 (243)
137 2d5f_A Glycinin A3B4 subunit; 20.8 1.6E+02 0.0056 32.3 7.2 60 513-574 362-423 (493)
138 1sef_A Conserved hypothetical 20.5 99 0.0034 30.9 5.1 48 520-574 184-232 (274)
139 3cew_A Uncharacterized cupin p 20.5 90 0.0031 26.7 4.2 47 521-574 29-77 (125)
140 1fxz_A Glycinin G1; proglycini 20.3 1.4E+02 0.0047 32.8 6.5 54 519-574 339-394 (476)
141 3l2h_A Putative sugar phosphat 20.1 84 0.0029 28.4 4.1 46 521-573 49-96 (162)
142 2d40_A Z3393, putative gentisa 20.0 2.3E+02 0.0077 29.6 7.9 71 522-613 272-342 (354)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=5.1e-33 Score=303.15 Aligned_cols=188 Identities=23% Similarity=0.357 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q 004712 370 FSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHR 449 (734)
Q Consensus 370 ~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 449 (734)
+..|..|+||+++||||+||||++|.+..|++++++++++|++++++++|.+.+.++.... +
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~------~------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR------R------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H------------
Confidence 4568899999999999999999999999999999999999999999999999877643211 0
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCC
Q 004712 450 LLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDST 529 (734)
Q Consensus 450 ~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge 529 (734)
+++. ...+.++++|+|.+++++++++++..++++.++|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0000 023578889999999999999999999999999999
Q ss_pred EEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeC
Q 004712 530 YIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALM 609 (734)
Q Consensus 530 ~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~ 609 (734)
.|+++||+++++|||.+|.++++..+ + ..+++|++|||.+++ .+.+ ++.+++|.++|+++.++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~~~------~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SGEP------RSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CCCC------cceEEEECccEEEEEEe
Confidence 99999999999999999999997654 1 378999999999873 3333 67899999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 004712 610 AEELKFVASQFRRLHSRQVQHTF 632 (734)
Q Consensus 610 ~~df~~l~~~~P~l~~~~l~~~~ 632 (734)
+++|.++++++|++.....+...
T Consensus 324 ~~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 324 SADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999987765544433
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.9e-31 Score=268.87 Aligned_cols=203 Identities=22% Similarity=0.383 Sum_probs=173.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHHHHHHHHHHHhc
Q 004712 422 QTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRR 501 (734)
Q Consensus 422 ~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ll~~ 501 (734)
++++++++.+..+|+++++++++||+++++|++|+.||++|++|.|.++++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999998877 8
Q ss_pred CcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhh
Q 004712 502 VPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWA 581 (734)
Q Consensus 502 v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~ 581 (734)
+|+|.++++++++.++..++++.|.||++|+++||+++++|||.+|.|+++. +| .+ +..+++|++|||.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~--~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TV--LAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CE--EEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eE--EEEecCCCCcCcHHhc--
Confidence 9999999999999999999999999999999999999999999999999985 33 23 7899999999999874
Q ss_pred cCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 004712 582 LDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQ 638 (734)
Q Consensus 582 l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~ 638 (734)
.+. .++++++++|+++|+++.|++++|.++++++|++..+.++...+.++.+
T Consensus 152 -~~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~ 203 (212)
T 3ukn_A 152 -KEQ----VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYN 203 (212)
T ss_dssp -SSS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEE
T ss_pred -cCC----CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhccc
Confidence 222 0137899999999999999999999999999988887766666544443
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=4.4e-30 Score=256.05 Aligned_cols=189 Identities=23% Similarity=0.431 Sum_probs=172.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHHHHHHHHHHHhcCcccc
Q 004712 427 SLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFE 506 (734)
Q Consensus 427 ~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~ 506 (734)
+++.+..+|+++++++++||+++++|.+|+.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567788999999999999999999999999999999999997 5789999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCC
Q 004712 507 NMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKS 586 (734)
Q Consensus 507 ~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~ 586 (734)
++++++++.++..+++..|.||++|+++||+++++|||.+|.|+++. .+|+ + +..+++|++|||.+++. +.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~~---~~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLLT---RER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHHH---SSC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHcC---CCc
Confidence 99999999999999999999999999999999999999999999987 4555 3 78999999999998742 233
Q ss_pred CCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHH
Q 004712 587 GVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 630 (734)
Q Consensus 587 ~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~ 630 (734)
++++++|+++|+++.|++++|.++++++|++....++.
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEI 190 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHH
Confidence 67899999999999999999999999999877644443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=1e-29 Score=254.37 Aligned_cols=189 Identities=26% Similarity=0.423 Sum_probs=170.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCCChHHHHHhCCcchHHHHHHHHHHHHHhcCccc
Q 004712 426 QSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLF 505 (734)
Q Consensus 426 ~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F 505 (734)
++++.+..+|+++++++++||++++||++|+.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5678899999999999999999999999999999999999997 578999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCC
Q 004712 506 ENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPK 585 (734)
Q Consensus 506 ~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~ 585 (734)
.++++++++.++..+++..|.||++|+++||+++++|||.+|.|+++. .+|++ ..+++|++|||.+++. ..
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~~---~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLLT---RG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHHH---CS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHhc---CC
Confidence 999999999999999999999999999999999999999999999975 45554 3689999999988742 22
Q ss_pred CCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHH
Q 004712 586 SGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 630 (734)
Q Consensus 586 ~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~ 630 (734)
+ ++++++|+++|+++.|++++|..+++++|++.....+.
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 3 67899999999999999999999999999776644443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.86 E-value=7.1e-21 Score=193.51 Aligned_cols=211 Identities=16% Similarity=0.215 Sum_probs=140.6
Q ss_pred HHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEE
Q 004712 106 FCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELV 185 (734)
Q Consensus 106 ~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV 185 (734)
.||.+++++.++++++.++....+ . +......+..++.+++++|.+|++++|.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~-~---------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ-L---------SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH-H---------TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc-c---------ChhhhhHHHHHHHHHHHHHHHHHHHHHcccc--------------
Confidence 488888888888888766652211 1 2223457888999999999999999999962
Q ss_pred eCHHHHHHHHHhhhhHHHhHhhCcHhHHHHHhhhccCCCchhHHhHHHHHHHHHhhhhhhhHhhcchhhhhhh-hhhhHH
Q 004712 186 IDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRILPLTSELKR-TAGVFA 264 (734)
Q Consensus 186 ~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~-~~~~~~ 264 (734)
+ .++|+++ +++|+++++|+....... . ..+. ....+.+|++| +.|++|+.+..+...+ ......
T Consensus 65 -~----~~~y~~~-~iiDllailP~~~~~~~~-~-~~~~---~~~lr~lRllR----llR~~r~~~~~~~~~~~l~~~~~ 129 (223)
T 1orq_C 65 -D----PAGYVKK-TLYEIPALVPAGLLALIE-G-HLAG---LGLFRLVRLLR----FLRILLIISRGSKFLSAIADAAD 129 (223)
T ss_dssp -C----HHHHHHH-HHHHCTTHHHHHHHHHHH-H-HHHT---TTCHHHHHHHH----HHHHHHHHHSCSSHHHHHHHHHH
T ss_pred -c----HHHHHHH-hHHHHHHHHHHHHHHHHh-c-chhH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3799998 999999999997654210 0 0000 11233333332 3334443332222111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhhcCCCCCcccccccCCCCccccccccccchhcccccCCCC
Q 004712 265 ETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSAD 344 (734)
Q Consensus 265 ~~~~~~~~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c~~~~~c~~~~l~~~~~~~~~~~sW~~~~~~~~~~~c~~~ 344 (734)
+ .+....+++.++..|+.||++|.+.. ++.+
T Consensus 130 ~---~~l~~~~~~~~~~~~~~~~~~~~~e~-----------------------------~~~~----------------- 160 (223)
T 1orq_C 130 K---IRFYHLFGAVMLTVLYGAFAIYIVEY-----------------------------PDPN----------------- 160 (223)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHTTS-----------------------------SSTT-----------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------CCcC-----------------
Confidence 1 12233344445678889998877431 0001
Q ss_pred CCCCCCCcchhhhhhhcCcccCchhHHHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 345 EDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTY 424 (734)
Q Consensus 345 ~~~~~f~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~ 424 (734)
+....|..|+||+++|+||+||||++|.+..|++++++++++|++++|+.+|.+++.
T Consensus 161 -----------------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~ 217 (223)
T 1orq_C 161 -----------------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217 (223)
T ss_dssp -----------------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112368899999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 004712 425 LQS 427 (734)
Q Consensus 425 l~~ 427 (734)
+++
T Consensus 218 ~~~ 220 (223)
T 1orq_C 218 FQK 220 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.80 E-value=7.7e-19 Score=167.47 Aligned_cols=142 Identities=24% Similarity=0.399 Sum_probs=117.8
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec
Q 004712 476 ENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD 555 (734)
Q Consensus 476 ~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~ 555 (734)
+++++.||++||.++..+++.++++++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 6 ~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~- 84 (160)
T 4f8a_A 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD- 84 (160)
T ss_dssp ---------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET-
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC-
Confidence 5599999999999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred CCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHH
Q 004712 556 GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 630 (734)
Q Consensus 556 ~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~ 630 (734)
+ .+ +..+++|++||+.+++ ... ..+++++++|+++|+++.|++++|.++++++|.+....++.
T Consensus 85 -~--~~--~~~~~~G~~fG~~~~~---~~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 147 (160)
T 4f8a_A 85 -D--EV--VAILGKGDVFGDVFWK---EAT----LAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRN 147 (160)
T ss_dssp -T--EE--EEEEETTCEEECCTTT---CSS----CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred -C--EE--EEEecCCCEeCcHHHh---cCc----ccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23 7899999999999873 221 01267899999999999999999999999999776644443
No 7
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.77 E-value=1.8e-18 Score=175.21 Aligned_cols=197 Identities=18% Similarity=0.260 Sum_probs=158.9
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
.++++++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999997754 688877 78999999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRY 654 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~ 654 (734)
+.+++ .+.+ ++.+++|+++|+++.|++++|.++++++|.+....++...+ +.+.....+........
T Consensus 83 ~~~~~---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~l~~~~~ 149 (227)
T 3d0s_A 83 ELSIF---DPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR----RLRRTNNNLADLIFTDV 149 (227)
T ss_dssp CHHHH---SCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHSCH
T ss_pred eHHHc---CCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhcCCH
Confidence 99873 3333 67899999999999999999999999999888766555444 55555555566666677
Q ss_pred HHhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 655 SKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 655 ~~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
..|+...++..+++.+.+.+++.......|+.+||+.++.+|...+ +++.+++
T Consensus 150 ~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 150 PGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp HHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7788877777776554433333344557788999999999998744 4444443
No 8
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.77 E-value=9e-18 Score=170.49 Aligned_cols=193 Identities=18% Similarity=0.205 Sum_probs=153.9
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEee
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fG 574 (734)
.++++++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 46789999999999999999999999999999999999999999999999999999765 4788877 78999999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRY 654 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~ 654 (734)
+.++ +.+.+ +..+++|+++|+++.|++++|..++.++|.+....++...+. .+.....+. .....
T Consensus 83 ~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----l~~~~~~~~--~~~~~ 147 (231)
T 3e97_A 83 ETAV---LAHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARR----VTFLNDELI--AFGQN 147 (231)
T ss_dssp TTTT---TCCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHH--HHHHC
T ss_pred eHHH---hCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHH--HhccC
Confidence 9987 33333 788999999999999999999999999999887666665543 333333333 45556
Q ss_pred H-HhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHH-Hhhhhhh
Q 004712 655 S-KRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAA-NALRGVH 706 (734)
Q Consensus 655 ~-~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~-~~~~~~~ 706 (734)
. .|+...++..+++.+.... +.......++.++|+.++.+|... .+++.++
T Consensus 148 ~~~Rl~~~L~~~~~~~~~~~~-~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~ 200 (231)
T 3e97_A 148 TEAALTHVFANLYRQRLAAGV-PQPEVLPLGTQDIMARTSSSRETVSRVLKRLE 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-SSTTEECCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCC-CceEecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6 7888888888776655332 344556778899999999999874 3444443
No 9
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.77 E-value=4.8e-18 Score=192.70 Aligned_cols=292 Identities=14% Similarity=0.200 Sum_probs=148.5
Q ss_pred cCC-ChHHHHHhHHHHHHHHHHHHHhhhhcccccccCCCc----c----cc---------cCccchhhHHHHHHHHHHHH
Q 004712 98 DPQ-DKLLLFCNKLFVISCILAVSVDPLFFYLPVINDSSK----C----LG---------IDRKLAITATTLRTIVDVFY 159 (734)
Q Consensus 98 ~P~-s~~~~~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~----~----~~---------~~~~~~~~~~~~~~~~d~~f 159 (734)
+|. |.....|+.++++++++++++..+. ..|....... + .. ........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~le-T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLE-TLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 475 5667788888888888887776665 2333211100 0 00 00112446788999999999
Q ss_pred HHHHHHHhhhceecCCCcccCCCeEEeCHHHHHHHHHhh-hhHHHhHhhCcHhHHHHHhhhccCCCchh--HHhHHHHHH
Q 004712 160 LLHMALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRR-YFIIDFLAVLPLPQIVVWRFLLRSNGSDV--LATKQALFF 236 (734)
Q Consensus 160 ~~di~l~F~T~y~~~~s~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~--~~~~~~Lr~ 236 (734)
.+|++++|.++- . .++|+++ |.++|+++++|+...+... ....+.. ......+|+
T Consensus 253 tiE~ilR~~~~~---~----------------k~~Y~ks~wniiDli~iip~~i~l~~~---~~~~~~~~~~~~~~~lrv 310 (514)
T 2r9r_B 253 SFEFLVRFFACP---S----------------KAGFFTNIMNIIDIVAIIPYYVTIFLT---ESNKSVLQFQNVRRVVQI 310 (514)
T ss_dssp HHHHHHHHHHSS---C----------------SSSSTTSHHHHHHHHTTHHHHHHHHHH---HTSCSHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCC---c----------------HHHHHhchhHHHHHHHHHHHHHHHHhh---hccccchhhhhHHHHHHH
Confidence 999999999852 0 1479998 8999999999986544321 1111111 111334444
Q ss_pred HHHhhhhhhhHhhcchhhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHhhhcCCCCCcc
Q 004712 237 IVLFQYFPRFFRILPLTSE---LKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTK 313 (734)
Q Consensus 237 i~l~qyl~Rl~ri~~l~~~---l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~gc~wyll~~~~~~~cw~~~c~~~~~c~~ 313 (734)
+|+ .|++|++++.+. ++.....+... .......+++.++..+++||++|.+..
T Consensus 311 lRl----lRvlRilkL~r~~~~l~~l~~tl~~s-~~~l~~ll~~l~i~~~if~~~~~~~e~------------------- 366 (514)
T 2r9r_B 311 FRI----MRILRIFKLSRHSKGLQILGQTLKAS-MRELGLLIFFLFIGVILFSSAVYFAEA------------------- 366 (514)
T ss_dssp HHH----HGGGGGGGGGGSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred HHH----HHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhheeec-------------------
Confidence 443 344444444433 22221111111 111122222233567788887775320
Q ss_pred cccccCCCCccccccccccchhcccccCCCCCCCCCCCcchhhhhhhcCcccCchhHHHHHHHHHHHhHhcccccCCCCc
Q 004712 314 DFLYCGNQDMTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQT 393 (734)
Q Consensus 314 ~~l~~~~~~~~~~~sW~~~~~~~~~~~c~~~~~~~~f~~g~~~~a~~~~~~~~~~~~~~Y~~slywal~tlttvGygd~~ 393 (734)
.... +.+..|..|+||+++||||+||||+.
T Consensus 367 ----------~~~~----------------------------------------~~F~s~~~a~y~~~vT~TTvGYGDi~ 396 (514)
T 2r9r_B 367 ----------DERD----------------------------------------SQFPSIPDAFWWAVVSMTTVGYGDMV 396 (514)
T ss_dssp ----------TCTT----------------------------------------CSCSSHHHHHHHHHHHHTTCCCSSSC
T ss_pred ----------cCCC----------------------------------------ccccchhhhhheeeeEEEecccCCCC
Confidence 0001 12245778999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhcCC
Q 004712 394 STFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGV 473 (734)
Q Consensus 394 ~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~ 473 (734)
|.+..+++|+++++++|++++++.+|.+.+.++....+..+ ++..+..++++.-...|.....+ + .+.+..
T Consensus 397 P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~~~ 467 (514)
T 2r9r_B 397 PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSAST 467 (514)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred CCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h------cccCCC
Confidence 99999999999999999999999999999877766543222 11111122233323333222211 1 112233
Q ss_pred ChHHHHHhCCcchHHHHHHHHH
Q 004712 474 DEENLVQSLPKDLRRDIKRHLC 495 (734)
Q Consensus 474 ~e~~ll~~Lp~~Lr~~I~~~l~ 495 (734)
.++.-..+|.+.++.++.....
T Consensus 468 ~~~s~~~el~e~~~~~~~~~~~ 489 (514)
T 2r9r_B 468 ISKSDYMEIQEGVNNSNEDFRE 489 (514)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 4455556777777776655443
No 10
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.76 E-value=1.6e-17 Score=166.49 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=144.8
Q ss_pred HhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechh
Q 004712 499 VRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEEL 577 (734)
Q Consensus 499 l~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~ 577 (734)
++++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999775 5788877 78999999999987
Q ss_pred hhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 004712 578 LTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKR 657 (734)
Q Consensus 578 l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R 657 (734)
++ .+.+ ++.+++|+++|+++.|++++|.++++++|++....++...+ +.+.....+..........|
T Consensus 79 ~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~R 145 (216)
T 4ev0_A 79 LL---DEGE------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR----RLREADLELDLLSFEEARNR 145 (216)
T ss_dssp HH---HCCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred hc---CCCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHH
Confidence 74 2233 67899999999999999999999999999887765555544 44455555555666666777
Q ss_pred HHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH
Q 004712 658 KKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN 700 (734)
Q Consensus 658 ~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~ 700 (734)
....++..+++ +.......++.++|..++.+|...+
T Consensus 146 l~~~L~~~~~~-------~~~~~~~~t~~~lA~~lg~sr~tvs 181 (216)
T 4ev0_A 146 VAYALLKLLRQ-------GLGPLFQIRHHELAALAGTSRETVS 181 (216)
T ss_dssp HHHHHHHHHHT-------TCCSEEECCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhhc-------CCccCCCCCHHHHHHHhCCCHHHHH
Confidence 77777666632 2223456678999999999988743
No 11
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.75 E-value=1.1e-17 Score=170.03 Aligned_cols=191 Identities=12% Similarity=0.093 Sum_probs=150.5
Q ss_pred cCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhh
Q 004712 501 RVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLT 579 (734)
Q Consensus 501 ~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~ 579 (734)
.+|+|..+++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehhh
Confidence 578999999999999999999999999999999999999999999999999764 4688877 7899999999999874
Q ss_pred hhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 004712 580 WALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKK 659 (734)
Q Consensus 580 ~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~ 659 (734)
...+ +..+++|+++|+++.|++++|.++++++|++....++...+ +.+.....+..........|+.
T Consensus 92 ---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rl~ 158 (232)
T 2gau_A 92 ---AEET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK----ELGYAERRTVTLTQKHVRGRLA 158 (232)
T ss_dssp ---HTSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHSCHHHHHH
T ss_pred ---CCCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHH
Confidence 2223 67899999999999999999999999999888766655544 4445555555556666677888
Q ss_pred HHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 660 MEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 660 ~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
..++..+++.+. .+++.......|+.++|+.++++|.+.+ +++.+++
T Consensus 159 ~~L~~l~~~~~~-~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 159 ETLLILKENFGF-ENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp HHHHHHHHHHCB-CTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 777776665443 2233445567889999999999998843 4444443
No 12
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.75 E-value=7.1e-18 Score=166.50 Aligned_cols=179 Identities=11% Similarity=0.085 Sum_probs=116.8
Q ss_pred HHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEe
Q 004712 495 CLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFC 573 (734)
Q Consensus 495 ~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~f 573 (734)
...++++++.|.++++++++.+...++.+.|+||++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 356788899999999999999999999999999999999999999999999999999875 5788887 7899999999
Q ss_pred echhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004712 574 GEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRR 653 (734)
Q Consensus 574 Ge~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~ 653 (734)
||...+ +...+ +..+++|+++|+++.|++++|.+++.++|++....++...+ + ...
T Consensus 83 ge~~~~--~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~----~------------l~~ 138 (194)
T 3dn7_A 83 SDYMAF--QKQQP------ADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK----S------------FAA 138 (194)
T ss_dssp CCHHHH--HHTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH----H------------HHH
T ss_pred eehHHH--hcCCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH----H------------HHH
Confidence 997432 22223 67899999999999999999999999999877655444433 2 222
Q ss_pred HHHhHHHHHhhHHHhHhhhhc-ccccCCCCCCCcchhhhHHHhHHHH
Q 004712 654 YSKRKKMEQTRKEEEEEEASE-GVQSSSTGGGSYSIGATFLATRFAA 699 (734)
Q Consensus 654 ~~~R~~~~~~~~aeer~~~~~-~~~~~~~~~~~~~l~~~i~~sr~a~ 699 (734)
..+|........+++|...-- .-.......++.++|+.++.+|.+.
T Consensus 139 ~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretl 185 (194)
T 3dn7_A 139 AQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYL 185 (194)
T ss_dssp HHHHHHHHHHC------------------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHH
Confidence 233444444444444432000 0001234567788888888888764
No 13
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.75 E-value=7.1e-18 Score=171.93 Aligned_cols=188 Identities=11% Similarity=0.071 Sum_probs=147.4
Q ss_pred HHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCE
Q 004712 494 LCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDF 572 (734)
Q Consensus 494 l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~ 572 (734)
...++++++|+|.++++++++.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~ 85 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGES 85 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCE
Confidence 3467899999999999999999999999999999999999999999999999999999774 5788877 789999999
Q ss_pred eechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004712 573 CGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWR 652 (734)
Q Consensus 573 fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~ 652 (734)
||+..++ ...+ +..+++|+++|+++.|++++|..++.++|.+....++...+ +.+.....+......
T Consensus 86 ~G~~~~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~l~~~ 152 (237)
T 3fx3_A 86 FGEAVAL---RNTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG----HLHSLVAQLEQLKAQ 152 (237)
T ss_dssp ECHHHHH---HTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHCCCC
T ss_pred echHHHh---cCCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 9999874 2223 67899999999999999999999999999887766555544 333333334444444
Q ss_pred HHHHhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH
Q 004712 653 RYSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN 700 (734)
Q Consensus 653 ~~~~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~ 700 (734)
....|+...++..+++.+. +.......|+.++|+.++.+|...+
T Consensus 153 ~~~~Rl~~~L~~~~~~~~~----~~~~~l~~t~~~iA~~lg~sr~tvs 196 (237)
T 3fx3_A 153 TGAQRVAEFLLELCDCDTG----ACEVTLPYDKMLIAGRLGMKPESLS 196 (237)
T ss_dssp CHHHHHHHHHHHHCCC---------EEECCSCTHHHHHHTTCCHHHHH
T ss_pred CHHHHHHHHHHHHhhhcCC----CeEEEecCCHHHHHHHhCCCHHHHH
Confidence 4556666666655543321 2334456778999999999988743
No 14
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.75 E-value=2.5e-17 Score=162.36 Aligned_cols=158 Identities=17% Similarity=0.258 Sum_probs=132.1
Q ss_pred ChHHHHHhCCcch----HHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEE
Q 004712 474 DEENLVQSLPKDL----RRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRL 549 (734)
Q Consensus 474 ~e~~ll~~Lp~~L----r~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v 549 (734)
.+..+.+.++|++ +.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|
T Consensus 12 ~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v 91 (187)
T 3gyd_A 12 HENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEV 91 (187)
T ss_dssp CHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred ccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence 3455666666654 244455556789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHH
Q 004712 550 ESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQV 628 (734)
Q Consensus 550 ~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l 628 (734)
+++.. .+|++.+ +.++++|++||+.+++ .+.+ ++++++|+++|+++.|++++|.++++++|++..+.+
T Consensus 92 ~v~~~~~~g~~~~--~~~~~~G~~fGe~~~l---~~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 92 NVIKDIPNKGIQT--IAKVGAGAIIGEMSMI---DGMP------RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp EEEEEETTTEEEE--EEEEETTCEESHHHHH---HCCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEECCCCCeEE--EEEccCCCeeeeHHHh---CCCC------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 99765 4788877 7899999999999874 2333 678999999999999999999999999999988777
Q ss_pred HHHHHHHHHhHHHH
Q 004712 629 QHTFRFYSQQWRTW 642 (734)
Q Consensus 629 ~~~~r~ys~~~r~~ 642 (734)
+...+..+++.+..
T Consensus 161 ~~l~~~l~~rl~~~ 174 (187)
T 3gyd_A 161 IRLLQLLTARFRES 174 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666555554433
No 15
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.74 E-value=3.3e-17 Score=164.70 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=148.9
Q ss_pred HHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCE--e
Q 004712 497 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDF--C 573 (734)
Q Consensus 497 ~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~--f 573 (734)
++++++|+|.++++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 5788999999999999999999999999999999999999999999999999999764 5788877 789999999 6
Q ss_pred echhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004712 574 GEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRR 653 (734)
Q Consensus 574 Ge~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~ 653 (734)
|+.++ +.+.+ ++.+++|+++|+++.|++++|.+++.++|++....++...+ +.+.......+.....
T Consensus 81 g~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~ 147 (220)
T 3dv8_A 81 SASCI---MRSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT----RFSDVMWLIEQIMWKS 147 (220)
T ss_dssp GGGGG---CTTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHSC
T ss_pred hHHHH---hCCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCC
Confidence 88876 33433 67899999999999999999999999999988766555544 4444444445555666
Q ss_pred HHHhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHH-Hhhhhhh
Q 004712 654 YSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAA-NALRGVH 706 (734)
Q Consensus 654 ~~~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~-~~~~~~~ 706 (734)
...|+...++..++..+. .....++.++|+.++.+|... .+++.++
T Consensus 148 ~~~Rl~~~L~~~~~~~~~-------~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 194 (220)
T 3dv8_A 148 LDKRVASFLLEETSIEGT-------NELKITHETIANHLGSHREVITRMLRYFQ 194 (220)
T ss_dssp HHHHHHHHHHHHHHHHTS-------SEECCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCC-------ceecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 677777777766654321 224567899999999999874 3444443
No 16
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.74 E-value=8.2e-18 Score=169.58 Aligned_cols=189 Identities=8% Similarity=0.077 Sum_probs=155.5
Q ss_pred HHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeech
Q 004712 497 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEE 576 (734)
Q Consensus 497 ~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~ 576 (734)
.+++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +.++++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 35778999999999999999999999999999999999999999999999999997667888887 889999999998
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004712 577 LLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSK 656 (734)
Q Consensus 577 ~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~ 656 (734)
+ +..+++|+++|+++.|++++|.++++++|++....++...+ +.+.....+..........
T Consensus 81 ---------~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 141 (220)
T 2fmy_A 81 ---------H------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD----LLKNSLTIINGLVFKDARL 141 (220)
T ss_dssp ---------C------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHHTHHHHH
T ss_pred ---------c------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCHHH
Confidence 2 56799999999999999999999999999887766555444 5555555666667777788
Q ss_pred hHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 657 RKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 657 R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
|+...++..+++.+.+.+++.......++.++|+.++.+|...+ +++.+++
T Consensus 142 Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 142 RLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp HHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888887777655433334445567788999999999998743 4544443
No 17
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.73 E-value=3.2e-17 Score=165.66 Aligned_cols=188 Identities=11% Similarity=0.096 Sum_probs=150.3
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEee
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fG 574 (734)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 46889999999999999999999999999999999999999999999999999999764 4688877 78999999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRY 654 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~ 654 (734)
+.+++ .+. |.+..+++|+++|+++.|++++|..++.++|.+....++...+ +.+.....+........
T Consensus 86 ~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~ 153 (227)
T 3dkw_A 86 EAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST----RLHQRIDEIETLSLKNA 153 (227)
T ss_dssp CTTTT---TTC-----SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred eHHhc---CCC-----CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCH
Confidence 98863 221 2257899999999999999999999999999988766555544 44444444445555666
Q ss_pred HHhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH
Q 004712 655 SKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN 700 (734)
Q Consensus 655 ~~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~ 700 (734)
..|+...++..+.+. .+++.......++.++|+.++.+|...+
T Consensus 154 ~~Rl~~~L~~~~~~~---~~~~~~~~~~~t~~~lA~~lg~sr~tvs 196 (227)
T 3dkw_A 154 THRVVRYLLTLAAHA---PGENCRVEIPVAKQLVAGHLSIQPETFS 196 (227)
T ss_dssp HHHHHHHHHHHHCSS---SSSCCCCCCCSCTHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHhhhhc---CCCCeEEEecCCHHHHHHHhCCCHHHHH
Confidence 677777666665443 1223445567788999999999988743
No 18
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.72 E-value=6e-17 Score=163.98 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=144.1
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEee
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fG 574 (734)
...++..++|.++++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 45788999999999999999999999999999999999999999999999999999764 5788877 78999999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQF-----RRLHSRQVQHTFRFYSQQWRTWAACFIQA 649 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~-----P~l~~~~l~~~~r~ys~~~r~~~~~~~q~ 649 (734)
+..++ .+. ++++.+++|+++|+++.|++++|.++++++ |++....++. ++++.+.....+...
T Consensus 88 ~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~----l~~~l~~~~~~~~~l 155 (230)
T 3iwz_A 88 EMGLF---IES-----DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQ----LSKRLLDTTRKASRL 155 (230)
T ss_dssp CGGGT---SCC-----SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred ehhhh---cCC-----CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 99874 221 126789999999999999999999999999 8776655444 444556666666667
Q ss_pred HHHHHHHhHHHHHhhHHHhHhhh-hcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 650 AWRRYSKRKKMEQTRKEEEEEEA-SEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 650 ~~~~~~~R~~~~~~~~aeer~~~-~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
.......|+...++..+++.+.. .+++ .....++.++|+.++.+|..-+ +++.+++
T Consensus 156 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~--~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 156 AFLDVTDRIVRTLHDLSKEPEAMSHPQG--TQLRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp HHCCHHHHHHHHHHHHTTSTTCEEETTE--EEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhCCCCCCCc--eecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77777778888877776654321 0111 1234678999999999998743 3444433
No 19
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.70 E-value=4.9e-17 Score=151.62 Aligned_cols=130 Identities=17% Similarity=0.243 Sum_probs=113.4
Q ss_pred hCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCcee
Q 004712 481 SLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSG 560 (734)
Q Consensus 481 ~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~ 560 (734)
++|+.+|.+...+...++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999954 443
Q ss_pred eeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHH
Q 004712 561 FFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 625 (734)
Q Consensus 561 ~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~ 625 (734)
+ +.++++|++||+.+++ ...+ ++++++|+++|+++.|++++|.++++++|.+..
T Consensus 83 ~--~~~~~~G~~fGe~~~l---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r 136 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 136 (139)
T ss_dssp E--EEEECTTCEESCHHHH---HCCC------CSSEEEESSCEEEEEEEHHHHHHHHTC------
T ss_pred E--EEEeCCCCEeccHHHH---CCCC------cceEEEECcceEEEEEcHHHHHHHHhhChHhhh
Confidence 3 7899999999999874 2233 678999999999999999999999999996543
No 20
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.70 E-value=3e-17 Score=165.77 Aligned_cols=188 Identities=11% Similarity=0.044 Sum_probs=149.2
Q ss_pred HHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechh
Q 004712 498 LVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEEL 577 (734)
Q Consensus 498 ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~ 577 (734)
+++++|+|..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +.++++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678999999999999999999999999999999999999999999999999998666888887 78999999999
Q ss_pred hhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 004712 578 LTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKR 657 (734)
Q Consensus 578 l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R 657 (734)
.+ ++++++|+++|+++.|++++|.++++++|.+....++...+ +.+.....+..........|
T Consensus 76 -------~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~R 138 (222)
T 1ft9_A 76 -------MH------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR----ALTSCMRTIEDLMFHDIKQR 138 (222)
T ss_dssp -------SC------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH----HHHHHHHHHHHHHTHHHHHH
T ss_pred -------CC------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHH
Confidence 12 57899999999999999999999999999887766555444 44455555555666666777
Q ss_pred HHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 658 KKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 658 ~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
+...++..+++.+...+++.......++.++|+.++.||...+ +++.+++
T Consensus 139 l~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 139 IAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp HHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777766665444322233345556788999999999997743 5554443
No 21
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.70 E-value=1.2e-16 Score=148.82 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=111.0
Q ss_pred HHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceee-eeeeeeCCCCEee
Q 004712 497 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGF-FNRGFLKEGDFCG 574 (734)
Q Consensus 497 ~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~-~~~~~l~~Gd~fG 574 (734)
++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ ..+..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 4688999999999999999999999999999999999999999999999999999764 3555432 1156899999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQ 638 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~ 638 (734)
+.++ +.+.+ ++.+++|+++|+++.|++++|.++++++|.+..+.++...+..+++
T Consensus 86 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 140 (142)
T 3mdp_A 86 VSSL---IKPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLAR 140 (142)
T ss_dssp GGGS---STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred hHHH---cCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHh
Confidence 9887 33433 6789999999999999999999999999999888777777655543
No 22
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.69 E-value=1.9e-16 Score=158.01 Aligned_cols=190 Identities=13% Similarity=0.167 Sum_probs=144.3
Q ss_pred cccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhh
Q 004712 503 PLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWA 581 (734)
Q Consensus 503 ~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~ 581 (734)
+++..+++++++.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+..++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHh--
Confidence 4566799999999999999999999999999999999999999999999765 5788877 7899999999999874
Q ss_pred cCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 004712 582 LDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKME 661 (734)
Q Consensus 582 l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~ 661 (734)
.+. +++..+++|+++|+++.|++++|..++.++|++....++... ++.+.....+..........|+...
T Consensus 78 -~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~Rl~~~ 147 (210)
T 3ryp_A 78 -EEG-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMA----RRLQVTSEKVGNLAFLDVTGRIAQT 147 (210)
T ss_dssp -STT-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHH----HHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -cCC-----CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHH----HHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 222 126789999999999999999999999999988775555444 4555555556666667777788877
Q ss_pred HhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHH-Hhhhhhhc
Q 004712 662 QTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAA-NALRGVHR 707 (734)
Q Consensus 662 ~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~-~~~~~~~~ 707 (734)
++..+++.+.... +.......|+.++|+.++.+|... .+++.+++
T Consensus 148 L~~l~~~~~~~~~-~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 148 LLNLAKQPDAMTH-PDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp HHHHTTSTTCEEE-TTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCCC-CCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777655432100 111223567899999999999874 34444443
No 23
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.69 E-value=8.8e-17 Score=153.93 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeee
Q 004712 487 RRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGF 566 (734)
Q Consensus 487 r~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~ 566 (734)
+.+..+....++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEE
Confidence 334445566789999999999999999999999999999999999999999999999999999998877888877 789
Q ss_pred eCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHH
Q 004712 567 LKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLH 624 (734)
Q Consensus 567 l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~ 624 (734)
+++|++||+.+++ ...+ ++.+++|+++|+++.|++++|.++++++|.+.
T Consensus 106 ~~~G~~fGe~~~~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~ 154 (161)
T 3idb_B 106 YDNRGSFGELALM---YNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKK 154 (161)
T ss_dssp EESCCEECGGGGT---CCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTS
T ss_pred cCCCCEechHHHH---cCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHH
Confidence 9999999999873 3333 67899999999999999999999999999654
No 24
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.68 E-value=2.2e-17 Score=153.35 Aligned_cols=129 Identities=85% Similarity=1.360 Sum_probs=109.0
Q ss_pred HHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeech
Q 004712 497 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEE 576 (734)
Q Consensus 497 ~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~ 576 (734)
++++++|+|..+++++++.++..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.+..+..+++|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 35788999999999999999999999999999999999999999999999999976566788876223399999999999
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHH
Q 004712 577 LLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 625 (734)
Q Consensus 577 ~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~ 625 (734)
++++.+.+.+..+.|+++++++|+++|+++.|++++|.++++++|++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8633344443223335789999999999999999999999999996543
No 25
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.68 E-value=5e-16 Score=154.55 Aligned_cols=187 Identities=19% Similarity=0.209 Sum_probs=139.4
Q ss_pred CcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCC
Q 004712 508 MDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKS 586 (734)
Q Consensus 508 ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~ 586 (734)
|++++++.++..++.+.|+||++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++||+.+++ .+..
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~---~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLF---EKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHh---cCCC
Confidence 58899999999999999999999999999999999999999999765 4688877 8899999999999873 2220
Q ss_pred CCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhhHH
Q 004712 587 GVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKE 666 (734)
Q Consensus 587 ~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~~a 666 (734)
..+++..+++|+++|+++.|++++|.++++++|.+....++...+ +.+.....+..........|+...++..+
T Consensus 76 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~~~~~~~~~~~l~~~~~~~Rl~~~L~~l~ 149 (207)
T 2oz6_A 76 --SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD----RLRKTTRKVGDLAFLDVTGRVARTLLDLC 149 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred --CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 000267899999999999999999999999999887766555444 44444444555556666667776666555
Q ss_pred HhHhhh-hcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 667 EEEEEA-SEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 667 eer~~~-~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
++.+.. .+++ .....++.+||+.++.+|...+ +++.+++
T Consensus 150 ~~~~~~~~~~~--~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 150 QQPDAMTHPDG--MQIKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp TSTTCEEETTE--EEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCc--eecccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 432210 0111 2235678899999999998754 4444443
No 26
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=2.5e-16 Score=147.80 Aligned_cols=124 Identities=23% Similarity=0.350 Sum_probs=109.5
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
.++++++++|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 457889999999999999999999999999999999999999999999999999997654 688877 78999999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 630 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~ 630 (734)
+.+++ ...+ +..+++|+++|+++.|++++|.++++++|.+....++.
T Consensus 82 ~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 128 (149)
T 2pqq_A 82 ELSLF---DPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA 128 (149)
T ss_dssp GGGGT---SCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH
T ss_pred hHHhc---CCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH
Confidence 98773 3333 67899999999999999999999999999776544433
No 27
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.68 E-value=1.2e-16 Score=162.72 Aligned_cols=194 Identities=10% Similarity=0.090 Sum_probs=143.9
Q ss_pred HHHHHHhcCcccccCcHHHHHHHHhc--CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEE-ecCCceeeeeeeeeCCC
Q 004712 494 LCLALVRRVPLFENMDERLLDAICER--LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVT-TDGGRSGFFNRGFLKEG 570 (734)
Q Consensus 494 l~~~ll~~v~~F~~ls~~~l~~l~~~--l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~-~~~g~e~~~~~~~l~~G 570 (734)
.....++++|+|..+++++++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++++|
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G 92 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAP 92 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESS
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCC
Confidence 34567899999999999999999998 9999999999999999999999999999999976 45788877 7899999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAA 650 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~ 650 (734)
++||+.+++ ... |++.++++|+++|+++.|++++|.+++.++|++....++...+ +.+.....+....
T Consensus 93 ~~fG~~~~~---~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----~l~~~~~~~~~l~ 160 (232)
T 1zyb_A 93 YLIEPQSLF---GMN-----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN----RAQNLYSRLWDEP 160 (232)
T ss_dssp EEECGGGGS---SSC-----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH----HHHHHHHHTTSCC
T ss_pred CeeeehHHh---CCC-----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 999999874 221 2257899999999999999999999999999887766555444 2222222222222
Q ss_pred HHHHHHhHHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHH-Hhhhhhhc
Q 004712 651 WRRYSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAA-NALRGVHR 707 (734)
Q Consensus 651 ~~~~~~R~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~-~~~~~~~~ 707 (734)
......|+...++..+++. ++ ......++.+||+.++.+|... .+++.+++
T Consensus 161 ~~~~~~Rl~~~L~~l~~~~-----~~-~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~ 212 (232)
T 1zyb_A 161 TLDLKSKIIRFFLSHCEKP-----QG-EKTFKVKMDDLARCLDDTRLNISKTLNELQD 212 (232)
T ss_dssp CCSHHHHHHHHHHTTCSSS-----SS-CEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhhc-----CC-eEEecCCHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3333444444444333211 11 2234567889999999999874 35555443
No 28
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.67 E-value=4.8e-16 Score=161.27 Aligned_cols=186 Identities=12% Similarity=0.167 Sum_probs=141.9
Q ss_pred ccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCC
Q 004712 506 ENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDP 584 (734)
Q Consensus 506 ~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 584 (734)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+..++ ..
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~---~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---ST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHh---CC
Confidence 5589999999999999999999999999999999999999999999765 5788877 8899999999999874 22
Q ss_pred CCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 004712 585 KSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTR 664 (734)
Q Consensus 585 ~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~ 664 (734)
. ++++++++|+++|+++.|++++|.+++.++|.+....++... ++.+.....+..........|+...++.
T Consensus 130 ~-----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~----~~l~~~~~~~~~l~~~~~~~Rla~~Ll~ 200 (260)
T 3kcc_A 130 G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMA----RRLQVTSEKVGNLAFLLVTGRIAQTLLN 200 (260)
T ss_dssp T-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred C-----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 126789999999999999999999999999988765555444 4555555556666666777788777777
Q ss_pred HHHhHhhhh-cccccCCCCCCCcchhhhHHHhHHHH-Hhhhhhhc
Q 004712 665 KEEEEEEAS-EGVQSSSTGGGSYSIGATFLATRFAA-NALRGVHR 707 (734)
Q Consensus 665 ~aeer~~~~-~~~~~~~~~~~~~~l~~~i~~sr~a~-~~~~~~~~ 707 (734)
.+++.+... +++ .....|+.+||+.++++|... .+++.+++
T Consensus 201 l~~~~~~~~~~~~--~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 201 LAKQPDAMTHPDG--MQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HHTSTTCEEETTE--EEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCc--eeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 665543211 111 223567899999999999874 44444443
No 29
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.65 E-value=1.5e-15 Score=143.48 Aligned_cols=127 Identities=15% Similarity=0.222 Sum_probs=107.3
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
.++++++++|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 568999999999999999999999999999999999999999999999999999998654 677776 78999999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 632 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~ 632 (734)
+..++ ... |++..+++|+++|+++.|++++|..+++++|++....++...
T Consensus 89 ~~~~~---~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~ 138 (154)
T 2z69_A 89 EAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLS 138 (154)
T ss_dssp GGGGG---SSC-----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHhhc---cCC-----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHH
Confidence 99874 221 225789999999999999999999999999987765554433
No 30
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.63 E-value=7.2e-16 Score=158.67 Aligned_cols=189 Identities=10% Similarity=0.047 Sum_probs=149.0
Q ss_pred HhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechh
Q 004712 499 VRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEEL 577 (734)
Q Consensus 499 l~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~ 577 (734)
+..+..+..+++++++.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+ .
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-~ 87 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-L 87 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-C
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-e
Confidence 33444448899999999999999999999999999999999999999999999765 5788877 789999999999 3
Q ss_pred hhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 004712 578 LTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKR 657 (734)
Q Consensus 578 l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R 657 (734)
+ .+ . +..+++|+++|+++.|++++|..++.++|++....++...+ +.+.....+..........|
T Consensus 88 l----~~------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----~l~~~~~~~~~~~~~~~~~R 152 (250)
T 3e6c_C 88 Y----PT------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT----KVAYYARQVAEMNTYNPTIR 152 (250)
T ss_dssp S----CC------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHTTSCHHHH
T ss_pred c----CC------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHH
Confidence 2 11 1 46899999999999999999999999999887765555544 44445555555566667778
Q ss_pred HHHHHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH-hhhhh
Q 004712 658 KKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGV 705 (734)
Q Consensus 658 ~~~~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~ 705 (734)
+...++..+++.+...+++.......|+.++|..++.+|...+ +++.+
T Consensus 153 l~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L 201 (250)
T 3e6c_C 153 ILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASL 201 (250)
T ss_dssp HHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 8888887777655433344455667889999999999988743 33333
No 31
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.63 E-value=1e-15 Score=153.64 Aligned_cols=184 Identities=12% Similarity=0.119 Sum_probs=104.9
Q ss_pred CcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhh
Q 004712 502 VPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTW 580 (734)
Q Consensus 502 v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~ 580 (734)
-|.|...++...+.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+..++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHh-
Confidence 36778888999999999999999999999999999999999999999999765 5788877 7899999999999873
Q ss_pred hcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 004712 581 ALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKM 660 (734)
Q Consensus 581 ~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~ 660 (734)
... +++..+++|+++|+++.|++++|.++++++|++....++...+ +.+.....+..........|+..
T Consensus 81 --~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----~~~~~~~~~~~l~~~~~~~Rl~~ 149 (213)
T 1o5l_A 81 --SSE-----PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE----HFRVVSEKLFFLTTKTLREKLMN 149 (213)
T ss_dssp --SSS-----CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHCC--------
T ss_pred --cCC-----CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhhCCHHHHHHH
Confidence 221 1267899999999999999999999999999887766555444 33333333444444445555555
Q ss_pred HHhhHHHhHhhhhcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhh
Q 004712 661 EQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVH 706 (734)
Q Consensus 661 ~~~~~aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~ 706 (734)
.++..+++.+ ......++.+||+.++++|...+ +++.++
T Consensus 150 ~L~~~~~~~g-------~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 189 (213)
T 1o5l_A 150 FLVRHMNEKR-------ELTLPVTLEELSRLFGCARPALSRVFQELE 189 (213)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHhccCC-------cccCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5555443221 23346678999999999998743 444443
No 32
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.63 E-value=3.6e-15 Score=152.90 Aligned_cols=185 Identities=13% Similarity=0.086 Sum_probs=144.0
Q ss_pred HHHHHHHHhcCc---eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCC
Q 004712 510 ERLLDAICERLK---PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPK 585 (734)
Q Consensus 510 ~~~l~~l~~~l~---~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~ 585 (734)
+++++.+..... .+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+.+++ ...
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh---CCC
Confidence 678888888888 999999999999999999999999999999764 5788877 7899999999998874 222
Q ss_pred CCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhhH
Q 004712 586 SGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRK 665 (734)
Q Consensus 586 ~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~~ 665 (734)
+ ..+..+++|+++|+++.|++++|.+++.++|++....++...+ +.+.....+..........|++..++..
T Consensus 105 ~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~~L~~l 176 (243)
T 3la7_A 105 K----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS----RILQTEMMIETLAHRDMGSRLVSFLLIL 176 (243)
T ss_dssp C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred C----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2 0145799999999999999999999999999888766555443 4444444444555566677888888888
Q ss_pred HHhHhhhhcccccCCCCCCCcchhhhHHHhHHHH-Hhhhhhhc
Q 004712 666 EEEEEEASEGVQSSSTGGGSYSIGATFLATRFAA-NALRGVHR 707 (734)
Q Consensus 666 aeer~~~~~~~~~~~~~~~~~~l~~~i~~sr~a~-~~~~~~~~ 707 (734)
+++.+.+.+++.......++.+||+.++++|... .+++.+++
T Consensus 177 ~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 177 CRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp HHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 7766544344445566788899999999999874 34444433
No 33
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.63 E-value=4.4e-15 Score=151.69 Aligned_cols=188 Identities=13% Similarity=0.072 Sum_probs=142.1
Q ss_pred ccCcHHHHHHHHh--cCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhc
Q 004712 506 ENMDERLLDAICE--RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWAL 582 (734)
Q Consensus 506 ~~ls~~~l~~l~~--~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l 582 (734)
+++++++++.+.. .++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3688999999885 599999999999999999999999999999999764 5788877 6788 99999999874
Q ss_pred CCCCCCCCCCcceEEEEe-ccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Q 004712 583 DPKSGVNLPSSTRTVRAL-KEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKME 661 (734)
Q Consensus 583 ~~~~~~~~p~st~tv~Al-t~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~ 661 (734)
...+ +++..++.|+ ++|+++.|++++|..++.++|++....++...+ +.+.....+..........|+...
T Consensus 76 ~~~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~Rla~~ 147 (238)
T 2bgc_A 76 DTET----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK----QVSYSLAKFNDFSINGKLGSICSQ 147 (238)
T ss_dssp TTCC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cCCC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHccCHHHHHHHH
Confidence 2221 0024678888 599999999999999999999887766555444 455555555666667777788887
Q ss_pred HhhHHHhHhhhhcccccCCC-CCCCcchhhhHHHhH-HH-HHhhhhhhc
Q 004712 662 QTRKEEEEEEASEGVQSSST-GGGSYSIGATFLATR-FA-ANALRGVHR 707 (734)
Q Consensus 662 ~~~~aeer~~~~~~~~~~~~-~~~~~~l~~~i~~sr-~a-~~~~~~~~~ 707 (734)
++..+++.+...+++..... ..|+.+||+.++.+| .. +.+++.+++
T Consensus 148 L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 148 LLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp HHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 77777654442233334455 788999999999998 44 556666544
No 34
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.62 E-value=3e-15 Score=138.83 Aligned_cols=121 Identities=25% Similarity=0.395 Sum_probs=105.8
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeec
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 575 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 575 (734)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+++|++||+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G~ 81 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGE 81 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEECH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEeee
Confidence 578999999999999999999999999999999999999999999999999999997543 1 37899999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 004712 576 ELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 633 (734)
Q Consensus 576 ~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r 633 (734)
.+++ .+.+ +..+++|+++|+++.|++++|.++++++|.+....++...+
T Consensus 82 ~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 82 MALI---SGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHH---HCCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHhc---cCCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9774 2223 56899999999999999999999999999887755555443
No 35
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.60 E-value=4.9e-15 Score=140.69 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=104.3
Q ss_pred HHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCE
Q 004712 493 HLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDF 572 (734)
Q Consensus 493 ~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~ 572 (734)
....++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+++|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCCE
Confidence 4557789999999999999999999999999999999999999999999999999999986 4443 678999999
Q ss_pred eechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHH
Q 004712 573 CGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLH 624 (734)
Q Consensus 573 fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~ 624 (734)
||+.+++. ..+ +.++++|+++|+++.|++++|.++++++|.+.
T Consensus 108 fGe~~~~~---~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~ 150 (154)
T 3pna_A 108 FGELALIY---GTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRK 150 (154)
T ss_dssp ECCHHHHH---CCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC
T ss_pred eeehHhhc---CCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHH
Confidence 99998742 333 67899999999999999999999999999543
No 36
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=8.2e-15 Score=154.76 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=118.8
Q ss_pred HHHHhCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecC
Q 004712 477 NLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG 556 (734)
Q Consensus 477 ~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~ 556 (734)
....++|+..|.+...++..++++++++|.++++++++.|+..++.+.|++|++|+++||+++.+|||.+|.|++.. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999853 4
Q ss_pred CceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHH
Q 004712 557 GRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 625 (734)
Q Consensus 557 g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~ 625 (734)
|. . +..+.+|++|||.+++ ...+ ++++++|+++|+++.|++++|..++.++|....
T Consensus 97 g~--~--~~~~~~G~~fGe~~ll---~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~ 152 (299)
T 3shr_A 97 GV--K--LCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 152 (299)
T ss_dssp TE--E--EEEECTTCEESCSGGG---TTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CE--E--EEEeCCCCeeeHhHHh---cCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence 43 2 7899999999999874 3333 788999999999999999999999999996544
No 37
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.55 E-value=3.1e-14 Score=152.82 Aligned_cols=127 Identities=14% Similarity=0.206 Sum_probs=111.8
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
.++++++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++ + +.++++|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 468899999999999999999999999999999999999999999999999999997654 5665 4 78999999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 635 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~y 635 (734)
|.+++ ...+ ++++++|+++|+++.|++++|..++ ++|.+..+.++...+..
T Consensus 89 e~~l~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 89 EIALL---RDSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp HHHHH---HTCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred HHHhc---CCCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 99874 2233 6789999999999999999999999 99998887666655433
No 38
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.54 E-value=3.3e-15 Score=138.34 Aligned_cols=124 Identities=16% Similarity=0.253 Sum_probs=105.3
Q ss_pred CcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeC-CCCEEEecCCCCCEEEEEEEeEEEEEEecCCceee
Q 004712 483 PKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFT-DSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGF 561 (734)
Q Consensus 483 p~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~-kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~ 561 (734)
||+.|.+.......++++++++|..++++.++.++..++.+.+. +|++|+++||+++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 45555555555567789999999999999999999999999999 999999999999999999999999885 45654
Q ss_pred eeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEE-EEeccceeeEeCHHHHHHHHHHhH
Q 004712 562 FNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTV-RALKEVEAFALMAEELKFVASQFR 621 (734)
Q Consensus 562 ~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv-~Alt~~ell~L~~~df~~l~~~~P 621 (734)
..+++|++||+.++ +...+ +..++ +|+++|+++.|++++|..++++++
T Consensus 79 ---~~l~~G~~fG~~~~---~~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT---LDKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS---SCCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh---cCCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 45889999999887 33333 56678 999999999999999999987765
No 39
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.54 E-value=2.4e-14 Score=151.12 Aligned_cols=129 Identities=20% Similarity=0.403 Sum_probs=114.1
Q ss_pred HHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec--CCceeeeeeeeeCCC
Q 004712 493 HLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD--GGRSGFFNRGFLKEG 570 (734)
Q Consensus 493 ~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~--~g~e~~~~~~~l~~G 570 (734)
.....+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++... +|++.+ +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678899999999999999999999999999999999999999999999999999998765 677766 7899999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 632 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~ 632 (734)
++|||.++ +...+ ++++++|.++|+++.|++++|.+++.++|++..+.++...
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~ 283 (299)
T 3shr_A 231 DWFGEKAL---QGEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAE 283 (299)
T ss_dssp CEECGGGG---SSSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred CEeChHHH---hCCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHh
Confidence 99999987 33333 7889999999999999999999999999987665555543
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=2.2e-13 Score=142.93 Aligned_cols=127 Identities=23% Similarity=0.339 Sum_probs=109.8
Q ss_pred HHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CC-ceeeeeeeeeCCC
Q 004712 493 HLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GG-RSGFFNRGFLKEG 570 (734)
Q Consensus 493 ~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g-~e~~~~~~~l~~G 570 (734)
.+...+++++++|..+++..+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++... +| ++.. +..+++|
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G 230 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPS 230 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTT
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCC
Confidence 344567889999999999999999999999999999999999999999999999999997643 33 4444 7899999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 630 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~ 630 (734)
++|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|++..+.++.
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 231 DYFGEIAL---LMNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp CEECSGGG---TCCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred CEecHHHH---cCCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 99999987 33333 78899999999999999999999999999876655444
No 41
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.50 E-value=4.5e-14 Score=134.31 Aligned_cols=62 Identities=16% Similarity=0.338 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 004712 371 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRL 432 (734)
Q Consensus 371 ~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 432 (734)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.+...+.
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999999999988765443
No 42
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8.1e-14 Score=142.07 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=105.4
Q ss_pred HHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEe
Q 004712 494 LCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 573 (734)
Q Consensus 494 l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 573 (734)
+...++++++.|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.++++..+++ + +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 4456788899999999999999999999999999999999999999999999999999876544 3 7899999999
Q ss_pred echhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHH
Q 004712 574 GEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 625 (734)
Q Consensus 574 Ge~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~ 625 (734)
||.+++. ..+ ++++++|+++|+++.|++++|.+++..+|++..
T Consensus 197 Ge~~~~~---~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVALLN---DLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHHHH---TCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHHhC---CCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 9998742 333 688999999999999999999999999997654
No 43
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.50 E-value=1.5e-13 Score=152.50 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeee
Q 004712 488 RDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFL 567 (734)
Q Consensus 488 ~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l 567 (734)
.+-......+.++++++|.+++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..+
T Consensus 136 s~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~l 213 (416)
T 3tnp_B 136 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNY 213 (416)
T ss_dssp CHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEEE
T ss_pred CHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEEe
Confidence 33445566889999999999999999999999999999999999999999999999999999998877888877 7899
Q ss_pred CCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHH
Q 004712 568 KEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLH 624 (734)
Q Consensus 568 ~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~ 624 (734)
.+|++|||.+++ ...+ ++++++|+++|+++.|++++|..++.++|...
T Consensus 214 ~~G~~fGe~all---~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 214 DNRGSFGELALM---YNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp ESCCEECGGGGT---SCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCCEEeeHHHh---cCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 999999999884 3444 78999999999999999999999999999654
No 44
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.49 E-value=5.5e-14 Score=138.87 Aligned_cols=162 Identities=17% Similarity=0.112 Sum_probs=120.8
Q ss_pred EEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEec
Q 004712 523 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALK 601 (734)
Q Consensus 523 ~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt 601 (734)
+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++||+ ++ +...+ +.++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~---~~~~~------~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EA---LEGKA------YRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GG---GTCSB------CSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hh---hCCCC------ceeEEEECC
Confidence 67999999999999999999999999999765 4788877 789999999999 87 33333 678999999
Q ss_pred cceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhHhhhhcccccCCC
Q 004712 602 EVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKEEEEEEASEGVQSSST 681 (734)
Q Consensus 602 ~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~~aeer~~~~~~~~~~~~ 681 (734)
+|+++.|++++|. |++....++.. +++.+.....+..........|+...++..+++.+...+++. ...
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l----~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~-~~~ 138 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNL----ARQMRRVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQG-IYV 138 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHH----HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTSTTEEEETTE-EEE
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCe-eec
Confidence 9999999999998 77665444443 344455555555555666667777777766654443222333 445
Q ss_pred CCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 682 GGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 682 ~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
..++.+||+.++.||..-+ +++.+++
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6788999999999998743 4444443
No 45
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.49 E-value=2.2e-13 Score=142.92 Aligned_cols=126 Identities=16% Similarity=0.232 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCC
Q 004712 492 RHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGD 571 (734)
Q Consensus 492 ~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd 571 (734)
.....++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|.. +..+++|+
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~~----~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTEE----EEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCeE----EEEcCCCC
Confidence 44567899999999999999999999999999999999999999999999999999999987 4432 78999999
Q ss_pred EeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 004712 572 FCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 632 (734)
Q Consensus 572 ~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~ 632 (734)
+|||.++ +.+.+ ++++++|.++|+++.|++++|..++.++|.+..+.+....
T Consensus 108 ~fGe~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 159 (291)
T 2qcs_B 108 SFGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 159 (291)
T ss_dssp EECGGGG---TCCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHH---hcCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999887 33333 7889999999999999999999999999977665544433
No 46
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1e-13 Score=141.34 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=104.0
Q ss_pred HHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 495 CLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 495 ~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
..++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|++ +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 46788999999999999999999999999999999999999999999999999999875 3443 67999999999
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSR 626 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~ 626 (734)
|.+++. ..+ ++++++|.++|+++.|++++|..++.++|.....
T Consensus 79 e~~l~~---~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (246)
T 3of1_A 79 ELALMY---NSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRL 121 (246)
T ss_dssp HHHHHH---TCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHH
T ss_pred hhHHhc---CCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHH
Confidence 998752 233 6789999999999999999999999999965443
No 47
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.46 E-value=5.5e-13 Score=126.27 Aligned_cols=86 Identities=19% Similarity=0.166 Sum_probs=70.5
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hhHHHHHHHHHHHHH
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQT------YLQS----LTIRLEEMRIKRRDS 442 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~------~l~~----~~~~~~e~~~k~~~~ 442 (734)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++++++. +.+. .+.+..+.+++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999999986 3332 245556667788999
Q ss_pred HHHHHhCCCChhHHHH
Q 004712 443 EQWMHHRLLPPDLRER 458 (734)
Q Consensus 443 ~~~m~~~~lp~~L~~r 458 (734)
+++++.++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=150.87 Aligned_cols=129 Identities=20% Similarity=0.283 Sum_probs=111.6
Q ss_pred HHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CC-ceeeeeeeeeCCC
Q 004712 493 HLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GG-RSGFFNRGFLKEG 570 (734)
Q Consensus 493 ~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g-~e~~~~~~~l~~G 570 (734)
.++..++++++.|..+++..+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+ +| ++.+ +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 455678889999999999999999999999999999999999999999999999999998754 33 3444 7899999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 632 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~ 632 (734)
++|||.+++ ...+ ++++++|+++|+++.|++++|..++..+|++..+.+++.-
T Consensus 322 d~fGe~all---~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~ 374 (381)
T 4din_B 322 DYFGEIALL---LNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYN 374 (381)
T ss_dssp CEECTTGGG---SCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHH
T ss_pred CEechHHHh---CCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999884 3444 7899999999999999999999999999987765555433
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.43 E-value=5.1e-13 Score=146.48 Aligned_cols=123 Identities=14% Similarity=0.213 Sum_probs=108.1
Q ss_pred HHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCC
Q 004712 491 KRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEG 570 (734)
Q Consensus 491 ~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~G 570 (734)
.+....+.++++++|.+++++.+..|+..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+++|
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~~G 197 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNISEG 197 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEESS
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCCCC
Confidence 345567899999999999999999999999999999999999999999999999999999986 3443 6789999
Q ss_pred CEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHH
Q 004712 571 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQV 628 (734)
Q Consensus 571 d~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l 628 (734)
++|||.+++ ...+ ++++++|+++|+++.|++++|..++.++|....+.+
T Consensus 198 ~~fGe~all---~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~ 246 (381)
T 4din_B 198 GSFGELALI---YGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMY 246 (381)
T ss_dssp CCBCGGGGT---SCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEchHHh---cCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHH
Confidence 999999874 3333 789999999999999999999999999997655433
No 50
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.42 E-value=2.1e-13 Score=127.26 Aligned_cols=92 Identities=14% Similarity=0.294 Sum_probs=55.1
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCC
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLP 452 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp 452 (734)
|..|+||++.|+|||||||++|.|..|++++++++++|++++|+++|.+++.++....+..+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 77899999999999999999999999999999999999999999999999988765544443333222233334445666
Q ss_pred hhHHHHHHHHHH
Q 004712 453 PDLRERVRRYDQ 464 (734)
Q Consensus 453 ~~L~~rVr~y~~ 464 (734)
.+....+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 51
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.42 E-value=3.9e-13 Score=149.15 Aligned_cols=123 Identities=13% Similarity=0.257 Sum_probs=104.7
Q ss_pred HHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecC-------CceeeeeeeeeC
Q 004712 496 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG-------GRSGFFNRGFLK 568 (734)
Q Consensus 496 ~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~-------g~e~~~~~~~l~ 568 (734)
..+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+. |++.+ +..++
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l~ 343 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARCF 343 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEEC
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEeC
Confidence 4567788999999999999999999999999999999999999999999999999986543 66666 78999
Q ss_pred CCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHH
Q 004712 569 EGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQ 629 (734)
Q Consensus 569 ~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~ 629 (734)
+|++|||.+++ ...+ ++++|+|+++|+++.|++++|.+++.++|++..+.++
T Consensus 344 ~G~~fGE~all---~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~ 395 (416)
T 3tnp_B 344 RGQYFGELALV---TNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIA 395 (416)
T ss_dssp TTCEESGGGGT---CCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC--
T ss_pred CCCEecHHHHh---CCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHH
Confidence 99999999883 3444 7899999999999999999999999999977654433
No 52
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.40 E-value=3.5e-13 Score=133.71 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=121.3
Q ss_pred HHhcCceEEeCCCCEEEecCCCC--CEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCC
Q 004712 516 ICERLKPCLFTDSTYIVREGDPV--DEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPS 592 (734)
Q Consensus 516 l~~~l~~~~~~kge~I~~eGd~~--~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~ 592 (734)
+...++.+.|++|++|+++||++ +.+|||.+|.|+++.. .+|++.+ +.++++|++||+ +++ ...+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l---~~~~------ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EAL---FGQE------ 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHH---HTCC------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhc---CCCC------
Confidence 34668899999999999999999 9999999999999765 4788877 789999999999 653 2223
Q ss_pred cceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhHhhh
Q 004712 593 STRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKEEEEEEA 672 (734)
Q Consensus 593 st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~l~~~~r~ys~~~r~~~~~~~q~~~~~~~~R~~~~~~~~aeer~~~ 672 (734)
+..+++|+++|+++.| +++|. |.+....++. ++++.+.....+..........|+...++..+++.+.
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~- 136 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------PELLKDLAQH----LSQGLAEAYRRIERLATQRLKNRMAAALLELSETPLA- 136 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTE-
T ss_pred cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-
Confidence 6789999999999999 99886 7665544444 3445555555555666666777777777776654433
Q ss_pred hcccccCCCCCCCcchhhhHHHhHHHHH-hhhhhhc
Q 004712 673 SEGVQSSSTGGGSYSIGATFLATRFAAN-ALRGVHR 707 (734)
Q Consensus 673 ~~~~~~~~~~~~~~~l~~~i~~sr~a~~-~~~~~~~ 707 (734)
.+++.......|+.+||+.++.+|...+ +++.+++
T Consensus 137 ~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 172 (202)
T 2zcw_A 137 HEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAR 172 (202)
T ss_dssp EEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2222334456788999999999998744 4444443
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=1.9e-12 Score=145.51 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=118.1
Q ss_pred hCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCc-
Q 004712 481 SLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGR- 558 (734)
Q Consensus 481 ~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~- 558 (734)
..|+..|.+.......+.++++++|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|+
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 357888887777888899999999999999999999999999999999999999999999999999999998754 554
Q ss_pred -eeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHHHHH
Q 004712 559 -SGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQ 627 (734)
Q Consensus 559 -e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~~~~ 627 (734)
+.+ +.++++|++||+.+ +. ..+ ++++++|+++|+++.|++++|..++.++|.+....
T Consensus 106 ~~~~--~~~~~~G~~fGe~~-l~---~~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l 163 (469)
T 1o7f_A 106 DAVT--ICTLGIGTAFGESI-LD---NTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGL 163 (469)
T ss_dssp GCEE--EEEECTTCEECGGG-GG---TCB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTT
T ss_pred cceE--EEEccCCCCcchhh-hC---CCC------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHH
Confidence 345 78999999999987 42 222 67899999999999999999999999999765543
No 54
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.37 E-value=2.5e-12 Score=117.59 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004712 371 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 430 (734)
Q Consensus 371 ~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 430 (734)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|.+++.+++...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999999999999999999999999999999999876543
No 55
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.36 E-value=2e-12 Score=145.30 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=103.1
Q ss_pred HHHHHHHhcCcccccCcHHHHHHHHhcCce-EEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCC
Q 004712 493 HLCLALVRRVPLFENMDERLLDAICERLKP-CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGD 571 (734)
Q Consensus 493 ~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~-~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd 571 (734)
....+.++++++|.+++++.++.++..+.. +.|++|++|+++||+++.+|||.+|.|+++..++ . + +..+++|+
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--~-~--~~~l~~G~ 407 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--G-V--VCTLHEGD 407 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT--E-E--EEEEETTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC--e-e--EEEecCCC
Confidence 344678999999999999999999999985 4999999999999999999999999999986432 2 3 78999999
Q ss_pred EeechhhhhhcCCCCCCCCCCcceEEEEec-cceeeEeCHHHHHHHHHHhHHHHHH
Q 004712 572 FCGEELLTWALDPKSGVNLPSSTRTVRALK-EVEAFALMAEELKFVASQFRRLHSR 626 (734)
Q Consensus 572 ~fGe~~l~~~l~~~~~~~~p~st~tv~Alt-~~ell~L~~~df~~l~~~~P~l~~~ 626 (734)
+|||.++ +...+ ++++++|++ +|+++.|++++|..++.++|.+..+
T Consensus 408 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~ 454 (469)
T 1o7f_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVR 454 (469)
T ss_dssp EECGGGG---TCCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC---
T ss_pred EEEEehh---hcCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHH
Confidence 9999987 33434 789999999 7999999999999999999976553
No 56
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.27 E-value=2.2e-11 Score=149.60 Aligned_cols=135 Identities=18% Similarity=0.211 Sum_probs=109.9
Q ss_pred HHHHhCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-
Q 004712 477 NLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD- 555 (734)
Q Consensus 477 ~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~- 555 (734)
..|+.-| .-|.+--..+-...|+++++|+++++.++.+||..+..+.+.+|++|+++||+++.+|+|++|.|.++..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3445544 33422222344567899999999999999999999999999999999999999999999999999998643
Q ss_pred --CCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHHHHHHHHHHhHHHH
Q 004712 556 --GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLH 624 (734)
Q Consensus 556 --~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~df~~l~~~~P~l~ 624 (734)
++.+.. +..+++|+.||| +++ ...| +++|++|.++|++++|++++|+.+..++|+..
T Consensus 102 ~~~~~~~~--v~~l~~G~sFGE-all---~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 102 SSHQDAVT--ICTLGIGTAFGE-SIL---DNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp SCTTSCEE--EEEEETTCEECG-GGG---GTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCcee--EEEecCCcchhh-hhc---cCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 233444 789999999999 553 3333 78999999999999999999999999999644
No 57
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.25 E-value=3e-11 Score=113.11 Aligned_cols=89 Identities=18% Similarity=0.310 Sum_probs=65.4
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHhCC
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRL-EEMRIKRRDSEQWMHHRL 450 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~ 450 (734)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+.+.+.....+. +++..+.+.....+-+++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999998876544332 333333333332232222
Q ss_pred CChhHHHHHHH
Q 004712 451 LPPDLRERVRR 461 (734)
Q Consensus 451 lp~~L~~rVr~ 461 (734)
+ .++.+++.+
T Consensus 120 ~-~~l~~~l~~ 129 (139)
T 3eff_K 120 T-RALHERFDR 129 (139)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 2 444455444
No 58
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.25 E-value=1.6e-11 Score=144.21 Aligned_cols=133 Identities=13% Similarity=0.192 Sum_probs=111.1
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHhcCcccccCcHHHHHHHHhcCc-eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEe
Q 004712 476 ENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLK-PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT 554 (734)
Q Consensus 476 ~~ll~~Lp~~Lr~~I~~~l~~~ll~~v~~F~~ls~~~l~~l~~~l~-~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~ 554 (734)
..++...|. .|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 12 r~iL~k~p~-~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPPG-QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCGG-GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCChh-hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 455654444 444444445578899999999999999999999998 789999999999999999999999999999865
Q ss_pred cCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEec-cceeeEeCHHHHHHHHHHhHHH
Q 004712 555 DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALK-EVEAFALMAEELKFVASQFRRL 623 (734)
Q Consensus 555 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt-~~ell~L~~~df~~l~~~~P~l 623 (734)
|+ .+ +.++++|++|||.+++ ...+ ++++++|++ +|+++.|++++|.++++++|.+
T Consensus 91 --g~-~i--l~~l~~Gd~fGe~al~---~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 --GK-GV--VCTLHEGDDFGKLALV---NDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp --TT-EE--EEEEETTCEECHHHHH---HTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred --CC-EE--EEEeCCCCEeehHHHh---CCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 33 34 7899999999998874 2223 678999999 5999999999999999998875
No 59
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.17 E-value=2.5e-10 Score=119.95 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhHhcccccCC-CCc-cCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004712 370 FSKYCYCLWWGLQNLSTLGQG-LQT-STFPGE----VIFSIALAIFGLILFALLIGNMQTYLQSLT 429 (734)
Q Consensus 370 ~~~Y~~slywal~tlttvGyg-d~~-~~~~~E----~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 429 (734)
+..+..|+||+++++||+||| |+. |.+... ..|++++++.|.++.+..+|.+.+.++...
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778999999999999999 986 665543 889999999999999999999888776544
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.14 E-value=2.2e-10 Score=140.77 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=98.7
Q ss_pred HHHHHHhcCcccccCcHHHHHHHHhcCceEE-eCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCE
Q 004712 494 LCLALVRRVPLFENMDERLLDAICERLKPCL-FTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDF 572 (734)
Q Consensus 494 l~~~ll~~v~~F~~ls~~~l~~l~~~l~~~~-~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~ 572 (734)
...+.+.++|.|.+++...++.++..+.... +++|++|+++||.++.+|||.+|.|+++...+|. +..+++||+
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd~ 408 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGDD 408 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTCE
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCCc
Confidence 4467889999999999999999999999765 5679999999999999999999999998644332 688999999
Q ss_pred eechhhhhhcCCCCCCCCCCcceEEEEecc-ceeeEeCHHHHHHHHHHh
Q 004712 573 CGEELLTWALDPKSGVNLPSSTRTVRALKE-VEAFALMAEELKFVASQF 620 (734)
Q Consensus 573 fGe~~l~~~l~~~~~~~~p~st~tv~Alt~-~ell~L~~~df~~l~~~~ 620 (734)
|||.++ +...| +.+||+|.++ |++++|+++||.+++.+.
T Consensus 409 FGElAL---L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 409 FGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp ECGGGG---TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred ccchhh---ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 999998 55555 8899999985 999999999999999764
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.06 E-value=6.3e-10 Score=100.24 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 430 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 430 (734)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+++.++....
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999999999999998855443
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.03 E-value=1.3e-09 Score=95.22 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=52.6
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSL 428 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 428 (734)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++.++..++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 66799999999999999999999999999999999999999999999999887643
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.99 E-value=1.3e-10 Score=102.94 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=53.9
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 430 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 430 (734)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999988865543
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.94 E-value=5.3e-09 Score=88.33 Aligned_cols=53 Identities=23% Similarity=0.530 Sum_probs=50.5
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 425 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 425 (734)
|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999998875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.83 E-value=1.9e-10 Score=110.80 Aligned_cols=63 Identities=17% Similarity=0.387 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004712 371 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLE 433 (734)
Q Consensus 371 ~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~ 433 (734)
..|+.|+||++.|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+.....+..
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~ 128 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999999999999999998876654443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.65 E-value=6.1e-08 Score=101.98 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=50.7
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 425 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 425 (734)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~ 135 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999877765
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.63 E-value=8.3e-08 Score=100.65 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=54.2
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSL 428 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 428 (734)
.|..|+||+++|+||+||||++|.|...++|+++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999988653
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.56 E-value=8.6e-08 Score=101.97 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=52.6
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSL 428 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 428 (734)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366899999999999999999999999999999999999999999999998877543
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.53 E-value=2.7e-07 Score=97.78 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=52.7
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSL 428 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 428 (734)
.|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999999999999999999999999999999999999999999998877543
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.49 E-value=4e-07 Score=96.61 Aligned_cols=57 Identities=19% Similarity=0.430 Sum_probs=50.3
Q ss_pred HHHHHHHHhHhcccccCCCCccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTST--FPGEVIFSIALAIFGLILFALLIGNMQTYLQSLT 429 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~--~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 429 (734)
+..++||++.|+||+||||..|+ +...++++++.+++|+++.|+.+|.+.+-+..-.
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 45689999999999999999997 6889999999999999999999998877665443
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.32 E-value=2.1e-06 Score=98.70 Aligned_cols=54 Identities=17% Similarity=0.393 Sum_probs=49.2
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGN-MQTYLQ 426 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~-~~~~l~ 426 (734)
|+.|+||++.|+||+||||++|.+..+++++++++++|++++++.++. +.+++.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999998 555443
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.29 E-value=7.8e-07 Score=93.29 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=52.5
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEV------IFSIALAIFGLILFALLIGNMQTYLQSLTI 430 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~------~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 430 (734)
|+.|+||++.|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+.....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999988876 599999999999999999999988776553
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.27 E-value=3.3e-06 Score=87.26 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=51.7
Q ss_pred HHHHHHHHhHhcccccCCCCccCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPG-------EVIFSIALAIFGLILFALLIGNMQTYLQSLT 429 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~-------E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 429 (734)
|+.|+||++.|+|||||||+.|.+.. -++++++++++|+.+++++++.+.++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999885 4999999999999999999999998876544
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.26 E-value=1.4e-06 Score=90.02 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=52.0
Q ss_pred HHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 372 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQ 426 (734)
Q Consensus 372 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 426 (734)
.|..|+||+++|+||+||||++|.|...++|+++.+++|+.+++++++.+...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999999999999887654
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.25 E-value=3.7e-06 Score=89.35 Aligned_cols=57 Identities=19% Similarity=0.439 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhHhcccccCCCCccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 371 SKYCYCLWWGLQNLSTLGQGLQTST--FPGEVIFSIALAIFGLILFALLIGNMQTYLQS 427 (734)
Q Consensus 371 ~~Y~~slywal~tlttvGygd~~~~--~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 427 (734)
..+..++||++.|+||+||||..|+ +...++++++.+++|+++.|+.+|.+.+-+..
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467799999999999999999864 88999999999999999999999987766543
No 76
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.01 E-value=7.4e-05 Score=75.32 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEE
Q 004712 106 FCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELV 185 (734)
Q Consensus 106 ~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV 185 (734)
.++.++.++.+.+++..-+.- .| .+......+..++.++-++|.+++++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~----------~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~--- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YE----------LDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K--- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SS----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C---
Confidence 456666777777766544331 11 1233345677899999999999999998763 1
Q ss_pred eCHHHHHHHHHhh-hhHHHhHhhCcH
Q 004712 186 IDPAQIAKRYMRR-YFIIDFLAVLPL 210 (734)
Q Consensus 186 ~d~~~Ia~rYlk~-~F~iDlls~lPl 210 (734)
-.++|.++ |-++|++.++|.
T Consensus 68 -----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 -----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ------------CHHHHHHHHHHHHT
T ss_pred -----chhHHhcCCcHHHHHHHHHHH
Confidence 13578887 788998777653
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.93 E-value=6.4e-07 Score=96.02 Aligned_cols=56 Identities=21% Similarity=0.519 Sum_probs=50.0
Q ss_pred HHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004712 373 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSL 428 (734)
Q Consensus 373 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 428 (734)
|..|+||++.|+||+||||++|.+..+++++++++++|+++++++++.+.+.+...
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999998877543
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.48 E-value=0.00032 Score=65.60 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=54.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEE
Q 004712 106 FCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELV 185 (734)
Q Consensus 106 ~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV 185 (734)
.|+.++++..++++++.-+..+.+ + +......+..++.++-++|.+|.++++..+-
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~-i---------~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~-------------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQ-L---------SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHh-h---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
Confidence 366666666666666555442211 1 1222446778999999999999999999862
Q ss_pred eCHHHHHHHHHhhhhHHHhHhhCcHhHH
Q 004712 186 IDPAQIAKRYMRRYFIIDFLAVLPLPQI 213 (734)
Q Consensus 186 ~d~~~Ia~rYlk~~F~iDlls~lPl~~i 213 (734)
| .++|+++ =++|++|++|+...
T Consensus 78 -~----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 78 -D----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -c----HHHHHHH-HHHHHHHHHHHHHH
Confidence 1 3578887 58999999998643
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.03 E-value=0.00097 Score=61.17 Aligned_cols=78 Identities=10% Similarity=0.134 Sum_probs=54.1
Q ss_pred HHhHHHHHHHHHHHHHhhhhcccccccCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHhhhceecCCCcccCCCeEE
Q 004712 106 FCNKLFVISCILAVSVDPLFFYLPVINDSSKCLGIDRKLAITATTLRTIVDVFYLLHMALQFRTAFIAPSSRVFGRGELV 185 (734)
Q Consensus 106 ~W~~i~l~~~l~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~di~l~F~T~y~~~~s~~~~~G~lV 185 (734)
.++.+++++.++++++.-+.- .|.. +......+..++.++-++|.+|.++++.++ ++
T Consensus 7 ~f~~~i~~lIlls~~~~~~et-~~~~---------~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~---------- 63 (132)
T 1ors_C 7 LVELGVSYAALLSVIVVVVEY-TMQL---------SGEYLVRLYLVDLILVIILWADYAYRAYKS---GD---------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HSCC---------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS----------
T ss_pred HHHHHHHHHHHHHHHHHHHHh-chhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC----------
Confidence 456666666666665554432 1211 222345677899999999999999999985 11
Q ss_pred eCHHHHHHHHHhhhhHHHhHhhCcHhHH
Q 004712 186 IDPAQIAKRYMRRYFIIDFLAVLPLPQI 213 (734)
Q Consensus 186 ~d~~~Ia~rYlk~~F~iDlls~lPl~~i 213 (734)
.++|++ |=++|+++++|+...
T Consensus 64 ------~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 64 ------PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp ------TTTTTT-TCGGGTGGGSCHHHH
T ss_pred ------HHHHHH-HHHHHHHHHHHHHHH
Confidence 247888 889999999998543
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.89 E-value=14 Score=31.77 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=46.7
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEE
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 599 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~A 599 (734)
+....+.+|..+-.--.+.+++++|++|.+++.. +|+ ...+++||.+-- .+. ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~i-------p~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLYL-------GAG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEEE-------CTT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEEE-------CCC-------CcEEEEe
Confidence 4456788888776665667899999999998865 233 467999998642 221 2346778
Q ss_pred eccceeeE
Q 004712 600 LKEVEAFA 607 (734)
Q Consensus 600 lt~~ell~ 607 (734)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88877554
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=68.67 E-value=19 Score=35.26 Aligned_cols=68 Identities=12% Similarity=0.214 Sum_probs=52.9
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEE
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 599 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~A 599 (734)
+....+.||+.+-..-.+.+++++|++|.+++... |+ ...+++||++= ..+. ....++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~-------~p~~-------~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLE-------ITAN-------HNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEE-------ECSS-------CCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE-------ECCC-------CCEEEEE
Confidence 45668999999988878899999999999998753 33 45789998764 2221 3468899
Q ss_pred eccceeeEe
Q 004712 600 LKEVEAFAL 608 (734)
Q Consensus 600 lt~~ell~L 608 (734)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999977
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=66.88 E-value=17 Score=30.90 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=41.7
Q ss_pred EEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEecc
Q 004712 523 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKE 602 (734)
Q Consensus 523 ~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~ 602 (734)
..+.+|..+-.-..+..++++|++|.+.+.. +|+ ...+++||.+=- .+. ....+++.++
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i-------~~~-------~~H~~~~~~~ 101 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMV-------PAH-------KIHAIAGKGR 101 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEE-------CTT-------CCBEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEE-------CCC-------CcEEEEeCCC
Confidence 3456666554444567799999999998765 333 467999997642 211 1235666677
Q ss_pred ceeeEe
Q 004712 603 VEAFAL 608 (734)
Q Consensus 603 ~ell~L 608 (734)
+.++.+
T Consensus 102 ~~~~~i 107 (114)
T 2ozj_A 102 FKMLQI 107 (114)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 777654
No 83
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=63.97 E-value=7.6 Score=45.65 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHhcccccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004712 371 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQS 427 (734)
Q Consensus 371 ~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 427 (734)
.....++|+++.+++..| ++..|.....+++.++++++++++.+...+++.++|..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346678999999998888 67889999999999999999999999999999999864
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=59.97 E-value=33 Score=28.93 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=44.4
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEE
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 599 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~A 599 (734)
+....+.+|..+-.--....++++|++|.+.+.. +|+ ...+++||.+-- .+. ....+++
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIVM-------PAG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEE-------CTT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEE-------CCC-------CCEEEEE
Confidence 3455677887664444446799999999998764 333 457899998742 221 2345667
Q ss_pred eccceeeEe
Q 004712 600 LKEVEAFAL 608 (734)
Q Consensus 600 lt~~ell~L 608 (734)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777776654
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=58.47 E-value=34 Score=28.87 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=44.7
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEE
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 599 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~A 599 (734)
+....+.+|..+-.--....++++|++|.+.+.. +|+ ...+.+||.+=- .+. ....+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFV-------PPH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEE-------CTT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEE-------CcC-------CceeeEe
Confidence 3455678887654333346789999999998765 333 467999998632 221 2345677
Q ss_pred eccceeeEe
Q 004712 600 LKEVEAFAL 608 (734)
Q Consensus 600 lt~~ell~L 608 (734)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 777777766
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=58.07 E-value=25 Score=30.64 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=33.3
Q ss_pred eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 522 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
...+.||..+-.- ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3467778665443 377899999999999865 444 45799999874
No 87
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=56.43 E-value=10 Score=24.27 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 004712 639 WRTWAACFIQAAWRRYSKRK 658 (734)
Q Consensus 639 ~r~~~~~~~q~~~~~~~~R~ 658 (734)
-.++++.+||.+|+++..+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999998653
No 88
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=53.51 E-value=14 Score=24.50 Aligned_cols=21 Identities=29% Similarity=0.263 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 004712 639 WRTWAACFIQAAWRRYSKRKK 659 (734)
Q Consensus 639 ~r~~~~~~~q~~~~~~~~R~~ 659 (734)
-.++++.+||.+|+++.-|..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999986643
No 89
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=50.45 E-value=45 Score=28.62 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=34.9
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.||..+-.--....++++|++|.+++.. +|+ ...+++||.+-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4456778887765544556899999999998865 333 46789998764
No 90
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=45.45 E-value=69 Score=26.92 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=34.2
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.+|+.-.. ....++++|++|.+++.. ++|. ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i-~~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT-EDGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE-TTCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE-CCCC-----EEEECCCCEEE
Confidence 34567788876544 457899999999999865 2244 45799999874
No 91
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=43.86 E-value=32 Score=28.66 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=33.7
Q ss_pred CceEEeCCCCEEEec--CCC-CCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVRE--GDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~e--Gd~-~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.+|..+-.. -.. ..++++|++|.+++.. +|+ ...+++||.+-
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 344577888876543 334 6799999999998765 233 45789998764
No 92
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=42.95 E-value=30 Score=32.49 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=27.4
Q ss_pred CCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 537 PVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 537 ~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
+.++++++++|.+.+-..++|+.. ...+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 467999999999998776656322 46899999984
No 93
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=42.86 E-value=39 Score=27.49 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=32.4
Q ss_pred ceEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
....+.+|..+-.--.. .+++++|++|.+.+... |+ ...+++||.+-
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 44567788776443334 35799999999987652 33 46789999764
No 94
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=40.97 E-value=63 Score=31.38 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=47.9
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEE
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 599 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~A 599 (734)
+....+.||+.+-.--.+.+++++|++|.+++.. +|+ ...+++||.+=-- +. ....+.|
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~ip-------~~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAVLP-------AN-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEEEC-------TT-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CcEEEEe
Confidence 4567889999876655667799999999998765 333 4678999986422 11 2346777
Q ss_pred -eccceeeEe
Q 004712 600 -LKEVEAFAL 608 (734)
Q Consensus 600 -lt~~ell~L 608 (734)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877653
No 95
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=38.27 E-value=70 Score=25.94 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=34.4
Q ss_pred CCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeC
Q 004712 538 VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALM 609 (734)
Q Consensus 538 ~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~ 609 (734)
..++++|++|.+.+... |+ ...+++||.+- ..+. ....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYV-------IPKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEE-------ECTT-------CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEE-------ECCC-------CeEeeEcCCCCEEEEEE
Confidence 37999999999987543 33 45789998763 2221 23356666788888775
No 96
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=38.21 E-value=31 Score=32.37 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=35.8
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.||.....--..++++++|++|.+++...+ +|.. ...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~----~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE----EEEECCCCEEE
Confidence 456678888776554334579999999999985533 3322 45899999875
No 97
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=36.99 E-value=79 Score=28.94 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=24.4
Q ss_pred CCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 537 PVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 537 ~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 46789999999999875 454 46799999864
No 98
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=36.38 E-value=43 Score=28.76 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=33.2
Q ss_pred CceEEeCCCCEEEecCCCC-CEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDPV-DEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~-~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.||..+-.--... .++++|++|.+++.. ++|+ ...+++||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-STTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-CCCe-----EEEeCCCCEEE
Confidence 4456778887765444443 689999999998754 2344 45789999764
No 99
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=35.93 E-value=98 Score=28.91 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=32.2
Q ss_pred EEeCCCCEEEe---cCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 523 CLFTDSTYIVR---EGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 523 ~~~~kge~I~~---eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
..+.||...-. --.+..++++|++|.+++...++|... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 45677765431 223457999999999998764422211 46899999874
No 100
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=35.63 E-value=89 Score=28.21 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=39.6
Q ss_pred ecCCCCCEEEEEEEeEEEEEEecCCc-eeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHH
Q 004712 533 REGDPVDEMLFIIRGRLESVTTDGGR-SGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAE 611 (734)
Q Consensus 533 ~eGd~~~~~yfI~~G~v~~~~~~~g~-e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~ 611 (734)
..-+..|++|+|++|.+.+...+++. ..-.....+++|+++-- |+. --.+-.|-++|.++.+...
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEEES
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEEeC
Confidence 34456789999999999986543210 00001467899988742 221 1234566778888777554
No 101
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=35.55 E-value=1e+02 Score=28.95 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=51.2
Q ss_pred HHHHHHHhcCce----EEeCCCCEEEec-C----------CCCCEEEEEEEeEEEEEEecCCce-eeeeeeeeCCCCEee
Q 004712 511 RLLDAICERLKP----CLFTDSTYIVRE-G----------DPVDEMLFIIRGRLESVTTDGGRS-GFFNRGFLKEGDFCG 574 (734)
Q Consensus 511 ~~l~~l~~~l~~----~~~~kge~I~~e-G----------d~~~~~yfI~~G~v~~~~~~~g~e-~~~~~~~l~~Gd~fG 574 (734)
+-+++....++| +....+++++.. | ++.++++++++|.+.+-..++|.. ..+....+++||+|=
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl 91 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL 91 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE
Confidence 345566666776 544446655432 2 245699999999999977665510 001146899999984
Q ss_pred chhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHH
Q 004712 575 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAE 611 (734)
Q Consensus 575 e~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~ 611 (734)
+.+ +.| .+-++-.++..+.+.++
T Consensus 92 -------lP~----gvp---HsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 92 -------LPG----NVP---HSPVRFADTVGIVVEQD 114 (176)
T ss_dssp -------ECT----TCC---EEEEECTTCEEEEEEEC
T ss_pred -------cCC----CCC---cCCcccCCcEEEEEEec
Confidence 222 122 23334567777776543
No 102
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=34.03 E-value=48 Score=30.67 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=32.4
Q ss_pred ceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
....+.||..+-.--....++++|++|.+.+... |+ ...+++||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE
Confidence 3456677765543334578999999999987642 33 46789999764
No 103
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=32.76 E-value=1.6e+02 Score=23.94 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=40.8
Q ss_pred ceEEeCCCCEEEecCCCC-CEE-EEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEE
Q 004712 521 KPCLFTDSTYIVREGDPV-DEM-LFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVR 598 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~~-~~~-yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~ 598 (734)
....+.+|..+-.--... .++ ++|++|.+++...+ |+ ...+.+||.+---. . ....+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip~-------~-------~~H~~~ 95 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLVAPI-------S-------TPHGVR 95 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEEEET-------T-------SCEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEEeCC-------C-------CcEEEE
Confidence 344677887664433332 466 89999999876531 33 45799998764221 1 234566
Q ss_pred EeccceeeEe
Q 004712 599 ALKEVEAFAL 608 (734)
Q Consensus 599 Alt~~ell~L 608 (734)
+.+++.++.+
T Consensus 96 ~~~~~~~l~~ 105 (110)
T 2q30_A 96 AVTDMKVLVT 105 (110)
T ss_dssp ESSSEEEEEE
T ss_pred EcCCcEEEEE
Confidence 6777665543
No 104
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=30.77 E-value=1e+02 Score=31.14 Aligned_cols=59 Identities=10% Similarity=0.298 Sum_probs=39.5
Q ss_pred CCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccceeeEeCHH
Q 004712 536 DPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAE 611 (734)
Q Consensus 536 d~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~ell~L~~~ 611 (734)
+..++++++++|.+.+-..++|+-. ...+++|++|= + |.. . ..+=+|-++|..++|.+.
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfl-------l-P~g---v---~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFL-------L-PAR---V---PHSPQRFANTVGLVVERR 107 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEE-------E-CTT---C---CEEEEECTTCEEEEEEEC
T ss_pred CCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEE-------e-CCC---C---CcCCcccCCeEEEEEeec
Confidence 3578999999999998766656321 46899999874 2 221 1 224445678888877743
No 105
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=29.89 E-value=95 Score=29.44 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=34.9
Q ss_pred CceEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEecCC---ceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGG---RSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~~~g---~e~~~~~~~l~~Gd~fG 574 (734)
+....+.+|...-.--.+ .+++++|++|.+++...+++ .+.. ...+++||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 445677888755333233 57999999999998654331 2222 46799999874
No 106
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=28.99 E-value=80 Score=28.37 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=35.3
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
+....++||..+-.-..+..+.++|++|..+. ..|.... -..+++||++=
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEE
Confidence 55678899988877666678889999999973 3333210 14678888764
No 107
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=28.96 E-value=1.6e+02 Score=28.86 Aligned_cols=65 Identities=12% Similarity=0.192 Sum_probs=42.0
Q ss_pred eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEec
Q 004712 522 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALK 601 (734)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt 601 (734)
...+.||...-..- .+++.+|++|.+++.. +|+ ...|++||++---+ +. ...+++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~~p~-----------~~---~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVYLPA-----------GE---KHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEEECT-----------TC---CCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEEECC-----------CC---CEEEEeCC
Confidence 45678887654432 7789999999998864 343 46799999874221 11 22344447
Q ss_pred cceeeEeC
Q 004712 602 EVEAFALM 609 (734)
Q Consensus 602 ~~ell~L~ 609 (734)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77777664
No 108
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=28.74 E-value=44 Score=29.38 Aligned_cols=44 Identities=23% Similarity=0.171 Sum_probs=30.2
Q ss_pred EeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 524 LFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 524 ~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
...||..-....+ .+++++|++|.+.+.. ++|. ...+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~-~~g~-----~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD-PDGT-----VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC-TTCC-----EEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE-CCCe-----EEEECCCCEEE
Confidence 4556665544322 3899999999998864 2454 35799999875
No 109
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=28.21 E-value=53 Score=27.79 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=28.8
Q ss_pred EEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeee-eeCCCCEee
Q 004712 523 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRG-FLKEGDFCG 574 (734)
Q Consensus 523 ~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~-~l~~Gd~fG 574 (734)
..+.+|..+-.--....++++|++|.+++.. +++ .. .+++||++-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQ-----EPHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTS-----CCEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCE-----EEEEeCCCCEEE
Confidence 3455665432222245689999999998765 233 34 789998764
No 110
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=28.04 E-value=45 Score=30.59 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=30.0
Q ss_pred EEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 523 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 523 ~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
..+.||..+-.--....++++|++|.+++.. +|+ ...+++||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3455665543333446789999999998864 333 46789998763
No 111
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=27.92 E-value=62 Score=26.88 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=40.0
Q ss_pred eCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEeccce
Q 004712 525 FTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVE 604 (734)
Q Consensus 525 ~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt~~e 604 (734)
..+|+.....-+...++++|++|.+++...+ |+ ...+++||.+-- .+. ....+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVV-------PKS-------VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEE-------CTT-------CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEE-------CCC-------CcEeeEeCCCeE
Confidence 3455433233322389999999999876533 23 467999998742 211 123455557788
Q ss_pred eeEeCHHH
Q 004712 605 AFALMAEE 612 (734)
Q Consensus 605 ll~L~~~d 612 (734)
++.+....
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 88776544
No 112
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=27.80 E-value=2.7e+02 Score=23.41 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=46.4
Q ss_pred eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEe-
Q 004712 522 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL- 600 (734)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Al- 600 (734)
...+.+|...-.--....++++|++|.+++.. +|+ ...+++||++--- +. ....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~-------~~-------~~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIP-------LD-------SEHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------CCEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEEC-------CC-------CcEEeEeCC
Confidence 34556666433333356799999999998765 333 4678999886422 21 12234443
Q ss_pred -ccce--eeEeCHHHHHHHHHHhH
Q 004712 601 -KEVE--AFALMAEELKFVASQFR 621 (734)
Q Consensus 601 -t~~e--ll~L~~~df~~l~~~~P 621 (734)
++++ ++.++.+-+..++.+.+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 3333 45567777766665544
No 113
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=27.70 E-value=58 Score=28.20 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=30.5
Q ss_pred eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 522 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
...+.||..+-.--....++++|++|.+++... |+ ...+.+||++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 345566655433333467999999999987642 33 45788998764
No 114
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.22 E-value=63 Score=28.33 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=31.9
Q ss_pred ceEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
....+.||..+-.--.. ..++++|++|.+.+.. +|+ ...+++||.+-
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 34567888765332223 3689999999998764 233 46789998763
No 115
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.14 E-value=87 Score=28.03 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=31.8
Q ss_pred ceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
....+.+|..+-.--....++++|++|.+.+... +++ ...+.+||.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 3456677776533233457999999999987653 331 15788998774
No 116
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=27.06 E-value=57 Score=27.75 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 536 DPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 536 d~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
...+++++|++|.+++...++ .+ ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~-~~----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGD-TA----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTC-SS----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCE-EE----EEEECCCCEEE
Confidence 356799999999998865332 11 15799999864
No 117
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=26.96 E-value=45 Score=30.93 Aligned_cols=45 Identities=13% Similarity=0.089 Sum_probs=30.5
Q ss_pred EEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 523 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 523 ~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
..+.||..+-.--....++++|++|.+++.. +|+ ...+++||++-
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3556665543333456789999999998754 333 46789999764
No 118
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=26.80 E-value=61 Score=29.44 Aligned_cols=51 Identities=4% Similarity=-0.035 Sum_probs=32.5
Q ss_pred ceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCc-----eeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGR-----SGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~-----e~~~~~~~l~~Gd~fG 574 (734)
....+.+|..+-.--....++++|++|.+.+...+.++ .. ...+++||++-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEE
Confidence 34467777654222224568999999999987654221 01 46799999764
No 119
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=25.69 E-value=56 Score=30.00 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=31.3
Q ss_pred ceEEeCCCCEEE--ecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYIV--REGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I~--~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
....+.+|.... ..-...+++++|++|.+++... ++ ...+++||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 355677777442 2222236999999999988653 33 45789998764
No 120
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=25.45 E-value=39 Score=27.79 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=31.4
Q ss_pred ceEEeCCCCEEEecCCCCC-EEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYIVREGDPVD-EMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~-~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
....+.||...-.--.+.. ++++|++|.+++... +|.+ ...+.+||.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP-EGSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET-TEEE----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC-CCCE----EEEEcCCCEEE
Confidence 3456777765422222333 599999999987653 3312 46899999874
No 121
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=25.30 E-value=92 Score=29.02 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=31.5
Q ss_pred eEEeCCCCEEEec--CCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 522 PCLFTDSTYIVRE--GDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 522 ~~~~~kge~I~~e--Gd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
...+.||...-.. .....++++|++|.+++.. +|+ ...+++||.+-
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3466777765422 2234699999999998765 333 46899999764
No 122
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=24.57 E-value=63 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=30.5
Q ss_pred eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 522 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
...+.||..-.. ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~--~g~-----~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH--EGE-----TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE--CCE-----EEEECCCcEEE
Confidence 345667743222 246799999999999765 344 35799999875
No 123
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=24.45 E-value=81 Score=27.50 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=30.7
Q ss_pred EeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 524 LFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 524 ~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
...||..-+.. +..++++.|++|.+.+.. ++|. ...+++||.+-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~-ddG~-----~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ-ADAD-----PVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE-TTCC-----CEEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe-CCCe-----EEEECCCCEEE
Confidence 55666554443 334599999999998864 4454 35789999875
No 124
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=23.98 E-value=1.1e+02 Score=29.78 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=29.1
Q ss_pred EeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 524 LFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 524 ~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
.+.||..+=.=-.+.+++|+|++|.++.... +|+ ...+++|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~-~g~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLR-NAP-----DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEET-TSC-----CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEEC-CCC-----EEecCCCCEEE
Confidence 4444443322234678999999999887653 233 45789998764
No 125
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.86 E-value=1e+02 Score=30.97 Aligned_cols=70 Identities=6% Similarity=0.096 Sum_probs=44.3
Q ss_pred ceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEe
Q 004712 521 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 600 (734)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Al 600 (734)
-...+.||..--......+++.||++|.+.+... +|+ ...+++||.+=--+ . ...+++..
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~-~g~-----~~~L~~Gds~y~p~-------~-------~~H~~~N~ 132 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT-SSS-----SKKLTVDSYAYLPP-------N-------FHHSLDCV 132 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEEECT-------T-------CCCEEEES
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEEC-CCc-----EEEEcCCCEEEECC-------C-------CCEEEEeC
Confidence 3557788765322234567999999999988653 144 35799999864221 1 12345556
Q ss_pred ccceeeEeCH
Q 004712 601 KEVEAFALMA 610 (734)
Q Consensus 601 t~~ell~L~~ 610 (734)
++++++.+.+
T Consensus 133 ~~Ar~l~V~k 142 (266)
T 4e2q_A 133 ESATLVVFER 142 (266)
T ss_dssp SCEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 7888887754
No 126
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=23.81 E-value=53 Score=30.63 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=30.0
Q ss_pred EEeCC-CCE-EEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 523 CLFTD-STY-IVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 523 ~~~~k-ge~-I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
..+.| |.. =-..-..+++++||++|.+++.. +|+ ...+++||.+-
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl--~g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV--CKN-----KFLSVKGSTFQ 139 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 45667 431 11123356789999999999876 333 45799999874
No 127
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=23.76 E-value=1.2e+02 Score=31.52 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=35.5
Q ss_pred CceEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.||...-.--.. .+++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 335567788765433334 789999999999986644 44322 35799999764
No 128
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=23.50 E-value=91 Score=30.71 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=35.9
Q ss_pred CceEEeCCCCEEEe-cCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVR-EGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~-eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
+....++||..+=. +-...++.++|++|++.... +|+ ...+++||++-
T Consensus 167 ~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~ 215 (246)
T 1sfn_A 167 VSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEE
Confidence 56678899987654 44556799999999998654 344 45899999865
No 129
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=23.03 E-value=1.2e+02 Score=31.95 Aligned_cols=52 Identities=19% Similarity=0.094 Sum_probs=36.1
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.||..+-.--....++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 345677888865433334789999999999987655 45532 24799999763
No 130
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=23.01 E-value=79 Score=29.60 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=32.0
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEe
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 573 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 573 (734)
+....+.||...-.--....++++|++|.+++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 344567777643222234457889999999986532 33 4579999998
No 131
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.86 E-value=1.5e+02 Score=30.79 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=36.2
Q ss_pred CceEEeCCCCEEEecCCCC-CEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVREGDPV-DEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~-~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.||..+-..-.+. +++++|++|.+++...+ +|+. . ...+++||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~-~--~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKA-S--VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCE-E--EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcE-E--EEEECCCCEEE
Confidence 4566788888765433344 89999999999986533 4441 1 45799999875
No 132
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=21.79 E-value=95 Score=30.39 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=34.6
Q ss_pred CceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEe
Q 004712 520 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 573 (734)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 573 (734)
+....+.+|..+-.---+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4455688888776555567899999999998865 343 4678999843
No 133
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=21.71 E-value=1.3e+02 Score=28.59 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=45.8
Q ss_pred cCceEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEE
Q 004712 519 RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVR 598 (734)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~ 598 (734)
.+....+.||..+-.-...+.++.+|++|.+. ++ ...+.+||++=.- +. +..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de-------~~~~~~Gd~~~~p-------~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE-------TDRFGAGDIEIAD-------QE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS-------SSEEETTCEEEEC-------SS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC-------cEEECCCeEEEeC-------cC-------CccCCE
Confidence 45677899999998888889999999999975 22 2367888886422 11 233455
Q ss_pred E--eccceeeEe
Q 004712 599 A--LKEVEAFAL 608 (734)
Q Consensus 599 A--lt~~ell~L 608 (734)
+ .++|.+++.
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 677877764
No 134
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=21.14 E-value=1.6e+02 Score=32.57 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=42.5
Q ss_pred HHHHHHhcCceEEeCCCCEEEecC-CCCCEEEEEEEeEEEEEE-ecCCceeeeeeeeeCCCCEee
Q 004712 512 LLDAICERLKPCLFTDSTYIVREG-DPVDEMLFIIRGRLESVT-TDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 512 ~l~~l~~~l~~~~~~kge~I~~eG-d~~~~~yfI~~G~v~~~~-~~~g~e~~~~~~~l~~Gd~fG 574 (734)
.+..+--.+....+.||-++-.-= -.++++.+|++|.+++.. ..+|+..+ ...+.+||+|=
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~--~~~L~~GDV~v 450 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAIL--DQEVQQGQLFI 450 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEE--EEEecCCeEEE
Confidence 344444556778899998774422 236899999999999854 33455444 57899999874
No 135
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=20.97 E-value=1.3e+02 Score=26.79 Aligned_cols=51 Identities=16% Similarity=-0.002 Sum_probs=31.0
Q ss_pred eEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEecCCce-eeeeeeeeCCCCEee
Q 004712 522 PCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRS-GFFNRGFLKEGDFCG 574 (734)
Q Consensus 522 ~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~~~g~e-~~~~~~~l~~Gd~fG 574 (734)
...+.||..+-.--.. .+++++|++|.+.+...+.... .. ...+.+||.+=
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~--~~~l~~Gd~i~ 99 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHF--QEEVFDDYAIL 99 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCE--EEEEETTCEEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccccee--eEEECCCCEEE
Confidence 4466777654322222 4599999999999876432110 00 15789998753
No 136
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=20.83 E-value=1.8e+02 Score=28.32 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=33.7
Q ss_pred eEEeCC-CCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 522 PCLFTD-STYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 522 ~~~~~k-ge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
...+.| |..+-.--.+..++++|++|.+++... |+ ...+++||.+-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE--GC-----TVEMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEE
Confidence 446888 777655455567999999999987653 33 45799999875
No 137
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=20.82 E-value=1.6e+02 Score=32.34 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=40.3
Q ss_pred HHHHHhcCceEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEec-CCceeeeeeeeeCCCCEee
Q 004712 513 LDAICERLKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 513 l~~l~~~l~~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 574 (734)
+..+-..+....+.||..+-.==.+ ++++++|++|.+++...+ +|+..+ ...+++||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 3444455677788998755432223 689999999999985543 345432 35799999874
No 138
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=20.53 E-value=99 Score=30.92 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=34.3
Q ss_pred CceEEeCCCCEEEe-cCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 520 LKPCLFTDSTYIVR-EGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 520 l~~~~~~kge~I~~-eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
+....+.||..+-. .-....++++|++|.+++.. +|+ ...+++||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i--~~~-----~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL--DNE-----WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 44557888876643 33456799999999998765 233 46799999874
No 139
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=20.51 E-value=90 Score=26.69 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=29.1
Q ss_pred ceEEeCCCCEEE--ecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEee
Q 004712 521 KPCLFTDSTYIV--REGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 521 ~~~~~~kge~I~--~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 574 (734)
....+.||..+- ..-+..+.+|+|++|.+.+.. +|+ ...+++||++=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI--DGE-----KIELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 344667776542 222223457779999998765 233 45788998764
No 140
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=20.32 E-value=1.4e+02 Score=32.78 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=37.1
Q ss_pred cCceEEeCCCCEEEecCCC-CCEEEEEEEeEEEEEEe-cCCceeeeeeeeeCCCCEee
Q 004712 519 RLKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCG 574 (734)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~-~~~~yfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fG 574 (734)
.+....+.||..+-.==.+ ++++++|++|.+++... .+|+..+ ...+++||++-
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~v 394 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVF--DGELQEGRVLI 394 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEEE
Confidence 3566788888865433223 67999999999998554 3454433 45799999873
No 141
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=20.10 E-value=84 Score=28.40 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=31.1
Q ss_pred ceEEeCCCCE-E-EecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEe
Q 004712 521 KPCLFTDSTY-I-VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 573 (734)
Q Consensus 521 ~~~~~~kge~-I-~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 573 (734)
....+.||.. . ...-...+++++|++|.+.+.. +|+ ...+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 3467778763 2 1112246799999999998764 233 4578999987
No 142
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=20.00 E-value=2.3e+02 Score=29.58 Aligned_cols=71 Identities=7% Similarity=0.047 Sum_probs=46.8
Q ss_pred eEEeCCCCEEEecCCCCCEEEEEEEeEEEEEEecCCceeeeeeeeeCCCCEeechhhhhhcCCCCCCCCCCcceEEEEec
Q 004712 522 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALK 601 (734)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~~yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~st~tv~Alt 601 (734)
...+.+|..--.--.+..++|+|++|..++.. +|+ ...+++||.|---.. ....+.+.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~-----~~~~~~GD~~~vP~~--------------~~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNE-----TFSFSAKDIFVVPTW--------------HGVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCE-----EEEEcCCCEEEECCC--------------CeEEEEeCC
Confidence 44666666543333356689999999998765 343 468999998753221 234566678
Q ss_pred cceeeEeCHHHH
Q 004712 602 EVEAFALMAEEL 613 (734)
Q Consensus 602 ~~ell~L~~~df 613 (734)
++.++.++..-+
T Consensus 331 ~~~l~~~~d~p~ 342 (354)
T 2d40_A 331 DSVLFSFSDRPV 342 (354)
T ss_dssp EEEEEEEESHHH
T ss_pred CEEEEEEcCHHH
Confidence 888888865543
Done!