BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004713
(734 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XGM2|MRE11_ARATH Double-strand break repair protein MRE11 OS=Arabidopsis thaliana
GN=MRE11 PE=2 SV=1
Length = 720
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/691 (78%), Positives = 602/691 (87%), Gaps = 21/691 (3%)
Query: 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65
RED ++T+R+LVATDCHLGYMEKDEIRRHDSF+AFEEICSIAE+K+VDF+LLGGDLFHEN
Sbjct: 3 REDFSDTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQVDFLLLGGDLFHEN 62
Query: 66 KPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIH 125
KPSR+TLVKAIEILRRHCLND+PVQFQVVSDQ VNFQN FG VNYEDPHFNVGLPVFSIH
Sbjct: 63 KPSRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIH 122
Query: 126 GNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLG 185
GNHDDPAGVDNLSA+DILSACNLVNYFGKMVLGGSGVG+IT+YPIL++KGST VALYGLG
Sbjct: 123 GNHDDPAGVDNLSAIDILSACNLVNYFGKMVLGGSGVGQITLYPILMKKGSTTVALYGLG 182
Query: 186 NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245
NIRDERLNRMFQTPHAVQWMRPE QE C VSDWFNILVLHQNRVK+NPKNAI+EHFLPRF
Sbjct: 183 NIRDERLNRMFQTPHAVQWMRPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLPRF 242
Query: 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305
LDF+VWGHEHECLIDPQEV GMGFH+TQPGSSVATSLI+GESKPKHVLLLEIK NQYRPT
Sbjct: 243 LDFIVWGHEHECLIDPQEVSGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPT 302
Query: 306 KIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPL 365
KIPLTSVRPFEYTEI+LKDE+DIDP+DQNSILEHLDKVVRNLIE++SKK VNRSE+KLPL
Sbjct: 303 KIPLTSVRPFEYTEIVLKDESDIDPNDQNSILEHLDKVVRNLIEKASKKAVNRSEIKLPL 362
Query: 366 VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDFERLRPEELN 425
VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSK+SKK ++EA IDD ERLRPEELN
Sbjct: 363 VRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKKGRSEANIDDSERLRPEELN 422
Query: 426 QQNIEALVAENNLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQETRHKIAKDSDT 485
QQNIEALVAE+NLKMEI+PVNDLDVALHNFVNKDD+LAFYSCVQYNLQETR K+AKDSD
Sbjct: 423 QQNIEALVAESNLKMEILPVNDLDVALHNFVNKDDKLAFYSCVQYNLQETRGKLAKDSDA 482
Query: 486 AKFEEEDIILKVGESLEERLKERSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAISFSDD 545
KFEE+D+ILKVGE LEERLK+RS + Q S + E++ +K ++G+ A SFSDD
Sbjct: 483 KKFEEDDLILKVGECLEERLKDRSTRPTGSSQFLSTGLTSENL-TKGSSGIANA-SFSDD 540
Query: 546 EDTTQISDTKSATRGRKWSSAASRSSRGALESDKSKTSTRGRGRG--RGRGRGRGANNLK 603
EDTTQ+S TRGR+ SS A+ +TRGR + RGRGRG+ ++ +K
Sbjct: 541 EDTTQMSGLAPPTRGRRGSSTAN--------------TTRGRAKAPTRGRGRGKASSAMK 586
Query: 604 QTTLDASLGFRQSQRSASVAAKAAVQSLVD-EEDNIASASSEEAEKYEVNEVDDSSEDDA 662
QTTLD+SLGFRQSQRSAS AA AA +S ED++ S SSEE E + N+ D SSEDD
Sbjct: 587 QTTLDSSLGFRQSQRSASAAASAAFKSASTIGEDDVDSPSSEEVEPEDFNKPDSSSEDDE 646
Query: 663 SLLSKGSKRPVP--RGKGRGATPSKRGRKSD 691
S KG KRP RG+GRG+ SKRGRK++
Sbjct: 647 STKGKGRKRPATTKRGRGRGSGTSKRGRKNE 677
>sp|Q9W6K1|MRE11_XENLA Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11
PE=2 SV=1
Length = 711
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/643 (39%), Positives = 366/643 (56%), Gaps = 52/643 (8%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D +T +ILVATD HLG+MEKD +R +DSF AF+EI +A+ EVDF+LLGGDLFH+NKP
Sbjct: 9 DDEDTFKILVATDIHLGFMEKDAVRGNDSFVAFDEILRLAQDNEVDFLLLGGDLFHDNKP 68
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E LR++C+ DRP++F+V+SDQ+VNF +KF VNY+D + N+ LPVFS+HG
Sbjct: 69 SRRTLHICLEQLRKYCMGDRPIEFEVLSDQSVNFGYSKFPWVNYQDNNLNISLPVFSVHG 128
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+DILS+ LVN+FG+ + V +I + P+L++KG + +ALYGLG+
Sbjct: 129 NHDDPTGADALCALDILSSAGLVNHFGR----ATSVEKIDISPVLLQKGHSKIALYGLGS 184
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP E S WFN+ V+HQNR K P N I E FL FL
Sbjct: 185 IPDERLYRMFVNKQ-VMMLRPREDE----SSWFNLFVIHQNRSKHGPTNYIPEQFLDEFL 239
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P F+++QPGSSVATSL GE++ KHV LL IK + K
Sbjct: 240 DLVIWGHEHECKIAPTRNEQQLFYVSQPGSSVATSLSPGEAEKKHVGLLRIKGKKMNMQK 299
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDDQNSILE----HLDKVVRNLIERSSKKTVNRSEL 361
IPL +VR F +++L D DI +PD+ E ++KV L ++ N +
Sbjct: 300 IPLQTVRQFFIEDLVLSDYPDIFNPDNPRVTQEIETFCIEKVEAMLDTAERERLGNPRQP 359
Query: 362 KLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDIL-IFSKSSKKSKAEAKIDDFERL 419
PL+R++VDY+ GF N RF QK+V + ANP+DI+ F +K K ++ +F ++
Sbjct: 360 DKPLIRLRVDYTGGFEPFNTLRFSQKFVDRTANPKDIIHFFRHKEQKDKKDSITINFGKI 419
Query: 420 RPEEL---NQQNIEALV------AENNLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQY 470
+ L +E LV AE N+++ ++ + A+ FV+K+++ A V++
Sbjct: 420 DSKPLLEGTTLRVEDLVKEYFKTAEKNVQLSLLTERGMGEAVQEFVDKEEKDALEELVKF 479
Query: 471 NLQETRHKIAK---DSDTAKFEEEDIILKVGESLEERLKERSNHSKDAPQST----SNAA 523
L++T+ + + D++ K +EE + K E+ + E ++A Q S A
Sbjct: 480 QLEKTQRFLKERHIDAEEEKIDEE--VRKFRETRKTNTNEEDEEVREAIQRARTHRSQAP 537
Query: 524 SFEDIRSKTAAGVGTAISFSDDEDT-TQISDTKSATRGRKWSSAASRSSRGALESDKSKT 582
E + + + +S SDDED + + S ++RG T
Sbjct: 538 DVE-MSDEDDDALLRKVSLSDDEDVRASMPARGRGRGRARGGRGQSTTTRG--------T 588
Query: 583 STRGRGRGRG----RGRGRGANNLKQTTLDASLGFRQSQRSAS 621
S RGRG GR A + LDA F+ S R +
Sbjct: 589 SRRGRGSASADQPSSGRATKATGKNMSILDA---FKPSSRQPT 628
>sp|P49959|MRE11_HUMAN Double-strand break repair protein MRE11A OS=Homo sapiens GN=MRE11A
PE=1 SV=3
Length = 708
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/487 (45%), Positives = 316/487 (64%), Gaps = 30/487 (6%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D NT +ILVATD HLG+MEKD +R +D+F +EI +A++ EVDF+LLGGDLFHENKP
Sbjct: 8 DDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKP 67
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E+LR++C+ DRPVQF+++SDQ+VNF +KF VNY+D + N+ +PVFSIHG
Sbjct: 68 SRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+DILS VN+FG+ + V +I + P+L++KGST +ALYGLG+
Sbjct: 128 NHDDPTGADALCALDILSCAGFVNHFGRSM----SVEKIDISPVLLQKGSTKIALYGLGS 183
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP+ E + WFN+ V+HQNR K N I E FL F+
Sbjct: 184 IPDERLYRMF-VNKKVTMLRPKEDE----NSWFNLFVIHQNRSKHGSTNFIPEQFLDDFI 238
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P + F+++QPGSSV TSL GE+ KHV LL IK + K
Sbjct: 239 DLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHK 298
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVNR 358
IPL +VR F +I+L + DI +PD+ Q+ LE +++++ N ER ++ N
Sbjct: 299 IPLHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLEN-AER--ERLGNS 355
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDFE 417
+ + PLVR++VDYS GF + RF QK+V +VANP+DI+ F + ++ + + +F
Sbjct: 356 HQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFG 415
Query: 418 RL--RPEELNQQNIEALV------AENNLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQ 469
+L +P E +E LV AE N+++ ++ + A+ FV+K+++ A V+
Sbjct: 416 KLITKPSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVK 475
Query: 470 YNLQETR 476
Y L++T+
Sbjct: 476 YQLEKTQ 482
>sp|Q60HE6|MRE11_MACFA Double-strand break repair protein MRE11A OS=Macaca fascicularis
GN=MRE11A PE=2 SV=1
Length = 707
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/487 (45%), Positives = 314/487 (64%), Gaps = 30/487 (6%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D NT +ILVATD HLG+MEKD +R +D+F +EI +A EVDF+LLGGDLFHENKP
Sbjct: 8 DDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLARGNEVDFILLGGDLFHENKP 67
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E+LR++C+ DRPVQF+++SDQ+VNF +KF VNY+D + N+ +PVFSIHG
Sbjct: 68 SRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+DILS VN+FG+ + V +I + P+L++KGST +ALYGLG+
Sbjct: 128 NHDDPTGADALCALDILSCAGFVNHFGRSM----SVEKIDISPVLLQKGSTKIALYGLGS 183
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP+ E + WFN+ V+HQNR K N I E FL F+
Sbjct: 184 IPDERLYRMF-VNKKVTMLRPKEDE----NSWFNLFVIHQNRSKHGSTNFIPEQFLDDFI 238
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P + F+++QPGSSV TSL GE+ KHV LL IK + K
Sbjct: 239 DLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMQK 298
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVNR 358
IPL +VR F +I+L + DI +PD+ Q+ LE +++++ N ER ++ N
Sbjct: 299 IPLHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLEN-AER--ERLGNS 355
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDFE 417
+ + PLVR++VDYS GF + RF QK+V +VANP+DI+ F + ++ + + +F
Sbjct: 356 RQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFG 415
Query: 418 RL--RPEELNQQNIEALV------AENNLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQ 469
+L +P E +E LV AE N+++ ++ + A+ FV+K+++ A V+
Sbjct: 416 KLITKPSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVK 475
Query: 470 YNLQETR 476
Y L++T+
Sbjct: 476 YQLEKTQ 482
>sp|Q61216|MRE11_MOUSE Double-strand break repair protein MRE11A OS=Mus musculus GN=Mre11a
PE=2 SV=1
Length = 706
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 263/684 (38%), Positives = 387/684 (56%), Gaps = 69/684 (10%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D +T +ILVATD HLG+MEKD +R +D+F F+EI +A + EVDF+LLGGDLFHENKP
Sbjct: 8 DDEDTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKP 67
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E+LR++C+ DRPVQF+V+SDQ+VNF +KF VNY+D + N+ +PVFSIHG
Sbjct: 68 SRKTLHSCLELLRKYCMGDRPVQFEVISDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHG 127
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+D+LS VN+FG+ + V ++ + P+L++KGST +ALYGLG+
Sbjct: 128 NHDDPTGADALCALDVLSCAGFVNHFGRSM----SVEKVDISPVLLQKGSTKLALYGLGS 183
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP+ E + WFN+ V+HQNR K N I E FL F+
Sbjct: 184 IPDERLYRMF-VNKKVTMLRPKEDE----NSWFNLFVIHQNRSKHGNTNFIPEQFLDDFI 238
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P + F+++QPGSSV TSL GE+ KHV LL IK + K
Sbjct: 239 DLVIWGHEHECKIGPIKNEQQLFYVSQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMQK 298
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVNR 358
+PL +VR F +++L + ++ +PD+ Q+ LE +++++ + ER ++ N
Sbjct: 299 LPLRTVRRFFIEDVVLANHPNLFNPDNPKVTQAIQSFCLEKIEEML-DSAER--ERLGNP 355
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDIL-IFSKSSKKSKAEAKID-- 414
+ PL+R++VDYS GF N RF QK+V +VANP+D++ F +K K +I+
Sbjct: 356 QQPGKPLIRLRVDYSGGFEPFNVLRFSQKFVDRVANPKDVIHFFRHREQKGKTGEEINFG 415
Query: 415 --------DFERLRPEELNQQNIEALVAENNLKMEIIPVNDLDVALHNFVNKDDRLAFYS 466
+ LR E+L +Q + AE N+++ ++ + A+ FV+K+++ A
Sbjct: 416 MLITKPASEGATLRVEDLVKQYFQT--AEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEE 473
Query: 467 CVQYNLQETRHKIAK---DSDTAKFEEEDIILKVGESLEERLKERSNHSKDAPQSTSNAA 523
V+Y L++T+ + + D+ K +EE + + ES + E + ++A S + A
Sbjct: 474 LVKYQLEKTQRFLKERHIDALEDKIDEE--VRRFRESRQRNTNEEDDEVREA-MSRARAL 530
Query: 524 SFEDIRSKTAAGVGTAISFSDDEDTTQIS-DTKSATRGRKWSSAASRSSRGALESDKSKT 582
+ + T+A +SF E T S D+ SA R R S
Sbjct: 531 RSQS-ETSTSAFSAEDLSFDTSEQTANDSDDSLSAVPSRGRGRGRGRRGARGQSSAPRGG 589
Query: 583 STRGRGRG-RGRGRGRGANNLKQTTLDASL--GFRQS--QRSASVAAKAAVQSLVDEEDN 637
S RGR G RGR + T+ + S+ FR + Q S +VA K +++
Sbjct: 590 SQRGRDTGLEITTRGRSSKATSSTSRNMSIIDAFRSTRQQPSRNVAPKNYSETI------ 643
Query: 638 IASASSEEAEKYEVNEVDDSSEDD 661
EVDDS EDD
Sbjct: 644 ---------------EVDDSDEDD 652
>sp|Q9JIM0|MRE11_RAT Double-strand break repair protein MRE11A OS=Rattus norvegicus
GN=Mre11a PE=2 SV=1
Length = 706
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 254/650 (39%), Positives = 378/650 (58%), Gaps = 52/650 (8%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D +T +ILVATD HLG+MEKD +R +D+F F+EI +A + EVDF+LLGGDLFHENKP
Sbjct: 8 DDEDTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKP 67
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHG 126
SR TL +E+LR++C+ DRPVQF+++SDQ+VNF +KF VNY D + N+ +PVFSIHG
Sbjct: 68 SRKTLHSCLELLRKYCMGDRPVQFEIISDQSVNFGFSKFPWVNYRDGNLNISIPVFSIHG 127
Query: 127 NHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGN 186
NHDDP G D L A+D+LS VN+FG+ + V ++ + P+L++KGST +ALYGLG+
Sbjct: 128 NHDDPTGADALCALDVLSCAGFVNHFGRSM----SVEKVDISPVLLQKGSTKLALYGLGS 183
Query: 187 IRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246
I DERL RMF V +RP+ E + WFN+ V+HQNR K N I E FL F+
Sbjct: 184 IPDERLYRMF-VNKKVTMLRPKEDE----NSWFNLFVIHQNRSKHGSTNFIPEQFLDDFI 238
Query: 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306
D V+WGHEHEC I P F+++QPGSSV T+L GE+ KHV LL +K + K
Sbjct: 239 DLVIWGHEHECKIGPTRNEQQLFYVSQPGSSVVTALSPGETVKKHVGLLRVKGRKMNMQK 298
Query: 307 IPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVNR 358
+PL +VR F +++L + + +PD+ Q+ LE +++++ + ER ++ N
Sbjct: 299 LPLRTVRQFFMEDVVLANHPSLFNPDNPKVTQAIQSFCLEKIEEML-DSAER--ERLGNP 355
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDIL-IFSKSSKKSKAEAKID-- 414
+ + PL+R++VDYS GF N RF QK+V +VANP+D++ F +K K +I+
Sbjct: 356 QQPEKPLIRLRVDYSGGFEPFNVLRFSQKFVDRVANPKDVIHFFRHREQKGKTGEEINFG 415
Query: 415 --------DFERLRPEELNQQNIEALVAENNLKMEIIPVNDLDVALHNFVNKDDRLAFYS 466
+ LR E+L +Q + AE N+++ ++ + A+ FV+K+++ A
Sbjct: 416 KLIIKPASEGTTLRVEDLVKQYFQ--TAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEE 473
Query: 467 CVQYNLQETRHKIAK---DSDTAKFEEEDIILKVGESLEERLKERSNHSKDAPQSTSNAA 523
V+Y L++T+ + + D+ K +EE + + ES + E + ++A S A
Sbjct: 474 LVKYQLEKTQRFLKERHIDALEDKIDEE--VRRFRESRQRNTNEEDDEVREA---MSRAR 528
Query: 524 SFEDIRSKTAAGVGTA--ISFSDDEDTTQIS-DTKSATRGRKWSSAASRSSRGALESDKS 580
+ +S+ AA +A +SF E T S D++SA R R +
Sbjct: 529 ALRS-QSENAASAFSADDLSFDITEQTADDSDDSQSAVPSRGRGRGRGRRGGRGQSTAPR 587
Query: 581 KTSTRGRGRGRG-RGRGRGANNLKQTTLDASL--GFRQS--QRSASVAAK 625
S RGR G G RGR + T+ + S+ FR + Q S +VA K
Sbjct: 588 GGSQRGRDTGLGISTRGRSSKATASTSRNMSIIDAFRSTRQQPSRNVATK 637
>sp|Q9IAM7|MRE11_CHICK Double-strand break repair protein MRE11 OS=Gallus gallus GN=MRE11
PE=2 SV=1
Length = 700
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 317/509 (62%), Gaps = 38/509 (7%)
Query: 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK 66
+D +T +IL+ATD HLGY+EKD +R +D+F F EI A++ EVDF+LLGGDLFHENK
Sbjct: 7 QDDEDTFKILIATDIHLGYLEKDAVRGNDTFVTFNEILEHAQKNEVDFILLGGDLFHENK 66
Query: 67 PSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIH 125
PSR T+ +E LR++C+ DRPV F+V+SDQAVNFQ +KF VNY+D + N+ +P+FSIH
Sbjct: 67 PSRKTIHTCLESLRKYCMGDRPVSFEVLSDQAVNFQLSKFPWVNYQDENLNIFMPIFSIH 126
Query: 126 GNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLG 185
GNHDDP GVD L A+DILS L+N+FG+ + V +I + PIL+RKG T +ALYGLG
Sbjct: 127 GNHDDPTGVDALCALDILSCAGLLNHFGR----STSVEKIDISPILLRKGRTKIALYGLG 182
Query: 186 NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245
I DERL RMF V +RP+ E+ WFN+ V+HQNR K N I E FL F
Sbjct: 183 AIPDERLYRMFVNKQ-VTMLRPKEDEDS----WFNMFVIHQNRSKHGATNYIPEQFLDDF 237
Query: 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305
++ VWGHEHEC I P + F++TQPGSSV TSL GE+ KH+ LL +K + +
Sbjct: 238 INLAVWGHEHECKITPAQNEQQHFYVTQPGSSVVTSLSPGEAVKKHIGLLRVKGKKMKMQ 297
Query: 306 KIPLTSVRPFEYTEIILKDEADI-DPDD-------QNSILEHLDKVVRNLIERSSKKTVN 357
+I L +VR F +++L D ++ +PD+ Q +E ++ ++ N ER ++ N
Sbjct: 298 RIALETVRTFYMEDVVLADHPELFNPDNPKVTQAIQAFCMEKVEMMLDN-AER--ERLGN 354
Query: 358 RSELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAEAKIDDF 416
+ + PL+ ++VDY+ GF RF QKY+ +VANP+DI+ F + ++ + +F
Sbjct: 355 PRQPQKPLIILRVDYTGGFEPFIVHRFSQKYMDRVANPKDIIHFFRHREQKEKNDNDINF 414
Query: 417 ER-----------LRPEELNQQNIEALVAENNLKMEIIPVNDLDVALHNFVNKDDRLAFY 465
+ LR E+L +Q + AE +++ ++ + A+ FV+K+++ A
Sbjct: 415 GKLLSRPASEEVTLRVEDLVKQYFQT--AEKKVQLSLLTERRMGEAVQEFVDKEEKDAIE 472
Query: 466 SCVQYNLQETRHKIAK---DSDTAKFEEE 491
V++ L++T+ + + D++ K +EE
Sbjct: 473 ELVKFQLEKTQRFLKERHIDAEEEKIDEE 501
>sp|Q9UVN9|MRE11_COPC7 Double-strand break repair protein MRE11 OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=MRE11 PE=3 SV=1
Length = 731
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/504 (42%), Positives = 310/504 (61%), Gaps = 46/504 (9%)
Query: 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67
D +T++IL+ATD H+GY+E+D IR DS F EI +A + EVDF+LL GDLFHENKP
Sbjct: 18 DPEDTIKILLATDNHIGYLERDPIRGQDSINTFREILQLAVKNEVDFILLAGDLFHENKP 77
Query: 68 SRSTLVKAIEILRRHCLNDRPVQFQVVSD----QAVNFQNKFGHVNYEDPHFNVGLPVFS 123
SR L + + +LR + L D+P+Q +++SD +A F F +NYEDP+FN+ +PVFS
Sbjct: 78 SRDCLYQTLALLREYTLGDKPIQVELLSDPDEGKAAGFS--FPAINYEDPNFNISIPVFS 135
Query: 124 IHGNHDDPAGVD---NLSAVDILSACNLVNYFGKMVLGGS----GVGEITVYPILIRKGS 176
IHGNHDDP G L A+D+LS L+NY GK L S I V P+L+RKGS
Sbjct: 136 IHGNHDDPQGPGVNGALCALDVLSVSGLLNYMGKFDLPTSDADAATTGIAVRPVLLRKGS 195
Query: 177 TAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA 236
T + +YG+GN++D+R++ ++ +M P+ ++E WFNIL++HQNRVK P+
Sbjct: 196 TKLGMYGVGNVKDQRMHFELRSNRVRMYM-PKDKDE-----WFNILLVHQNRVKHGPQEY 249
Query: 237 INEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLE 296
+ E +D VVWGHEH+C I P+ V G +++TQPGSSVATSL +GE+ KHV LLE
Sbjct: 250 VPEGMFDDSVDLVVWGHEHDCRIIPEPVAGKNYYITQPGSSVATSLADGEAIEKHVALLE 309
Query: 297 IKENQYRPTKIPLTSVRPFEYTEIILKDEAD---IDPDDQNSILEHLDKVVRNLIERSSK 353
IK +++ T IPL +VRPF +E++L+D A+ +D +DQ I ++L + V +LI+++
Sbjct: 310 IKGKEFQLTPIPLRTVRPFVISEVVLEDAAEEEGLDVNDQMEITKYLKQKVNDLIDQAQA 369
Query: 354 KTVNRSELK-----------LPLVRIKVDYSGFM-TINPQRFGQKYVGKVANPQDILIFS 401
R+ LPLVR+KVD + T NP RFGQ++ G+VANP+D+L+F
Sbjct: 370 LWEERNARSIEAGDEEIPPMLPLVRLKVDTTNVTQTSNPIRFGQEFQGRVANPRDLLVFH 429
Query: 402 KSSKKSK----------AEAKIDDFERLRPEELNQQNIEALVAE--NNLKMEIIPVNDLD 449
+S K K E IDD + E+L + ++ LV E +++++ N +
Sbjct: 430 RSKKAGKRGAGKVDIDQPELSIDDPDLTVSEKLAKVRVKTLVREYLAAQELQLLGENGMS 489
Query: 450 VALHNFVNKDDRLAFYSCVQYNLQ 473
A+ FV KDD A + V +L+
Sbjct: 490 DAIQMFVEKDDIHAIQTHVNKSLK 513
>sp|Q9C291|MRE11_NEUCR Double-strand break repair protein mus-23 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=mus-23 PE=3 SV=3
Length = 739
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/485 (43%), Positives = 294/485 (60%), Gaps = 38/485 (7%)
Query: 5 PREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE 64
PR + A+T+RILV+TD H+GY E+ +R+ DS+ F+EI IA++++VD VLLGGDLFHE
Sbjct: 2 PRSE-ADTIRILVSTDNHVGYAERHPVRKDDSWRTFDEIMQIAKKQDVDMVLLGGDLFHE 60
Query: 65 NKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSI 124
NKPSR ++ + + LR+HCL +P + + +SD A F+ F VNYEDP NV +PVFSI
Sbjct: 61 NKPSRKSMYQVMRSLRKHCLGMKPCELEFLSDAAEVFEGAFPFVNYEDPDINVAIPVFSI 120
Query: 125 HGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGL 184
HGNHDDP+G + ++D+L A LVNYFG++ I V PIL++KG T +ALYGL
Sbjct: 121 HGNHDDPSGDGHYCSLDLLQAAGLVNYFGRV----PEADNIHVKPILLQKGRTKMALYGL 176
Query: 185 GNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244
N+RDER++R F+ + V++ RP Q+ +DWFN+L LHQN + + E+ LP
Sbjct: 177 SNVRDERMHRTFRD-NKVRFYRPNQQK----NDWFNLLALHQNHYAHTRTSYVAENMLPD 231
Query: 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRP 304
F+D V+WGHEHECLIDP P GFH+ QPGSSVATSL+ GE+ PKHV +L I ++
Sbjct: 232 FMDLVIWGHEHECLIDPVRNPETGFHVMQPGSSVATSLVPGEAVPKHVAILNITGRKFEV 291
Query: 305 TKIPLTSVRPFEYTEIILKDEADIDP-DDQNS---ILEHLDKVVRNLIERSSKK------ 354
KIPL +VRPF EI+L + D QN+ I + L +V +IE ++ +
Sbjct: 292 DKIPLKTVRPFVTREIVLASDKRFKGLDKQNNRHEITKRLMVIVNEMIEEANAEWRAVHA 351
Query: 355 ----TVNRSELKLPLVRIKVDYSG-----FMTINPQRFGQKYVGKVANPQDILIFSKSSK 405
E LPLVR+KVDY+ + NP RF ++ GKVAN D++ F ++K
Sbjct: 352 EDDDMDEDMEPPLPLVRLKVDYTAPDGARYEVENPHRFSNRFTGKVANHNDVVRFHCNTK 411
Query: 406 KSKAEAKIDDFERLRPEELNQQN-------IEALVAENNLKMEIIPVNDLDVALHNFVNK 458
K A E L + ++ A+ +LK I+P A++ FV+K
Sbjct: 412 GKKNVATAPGVREDIAEILESADTIKVDNLVQEFFAQQSLK--ILPQAPFSDAVNQFVSK 469
Query: 459 DDRLA 463
DD+ A
Sbjct: 470 DDKHA 474
>sp|Q09683|RAD32_SCHPO DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad32 PE=1 SV=1
Length = 649
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/505 (40%), Positives = 306/505 (60%), Gaps = 37/505 (7%)
Query: 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS 70
NT+RIL+++D H+GY EKD +R +DSF +F EI IA +++VD +LLGGD+FH+NKPSR
Sbjct: 16 NTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRK 75
Query: 71 TLVKAIEILRRHCLNDRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHGNHD 129
L +A+ LR +CL D+P + +++SD ++ ++NY DP+ NV +PVFSIHGNHD
Sbjct: 76 ALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHD 135
Query: 130 DPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRD 189
DP+G SA+DIL LVNYFG++ + I V PIL++KG T +ALYG+ N+RD
Sbjct: 136 DPSGDGRYSALDILQVTGLVNYFGRVPENDN----IVVSPILLQKGFTKLALYGISNVRD 191
Query: 190 ERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFV 249
ERL F+ + V+++RP+ + +WFN+L +HQN P + + E F+ F DFV
Sbjct: 192 ERLYHSFRE-NKVKFLRPDLYRD----EWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFV 246
Query: 250 VWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPL 309
+WGHEHECLID P F + QPGS++ATSL GE+ PKH +L I + KI L
Sbjct: 247 LWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRL 306
Query: 310 TSVRPFEYTEIILKDEADIDP--DDQNSILEHLDKVVRNLIERSSKK---------TVNR 358
+VRPF +IIL + + I P +++ +L +L V I ++ + V
Sbjct: 307 RTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVEN 366
Query: 359 SELKLPLVRIKVDYS-GFMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKAE------- 410
+ LPL+R++VDY+ G+ T NPQRF ++VG+VAN D++ F K ++++
Sbjct: 367 EKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKKKYTRSKRNDGLYT 426
Query: 411 AKIDDFERLRPEELNQQNIEALVAE--NNLKMEIIPVNDLDVALHNFVNKDDRLAFYSCV 468
+ ++D ++N +E+LV E ++E +P + L A+ NFV KDDR A CV
Sbjct: 427 SAVEDI------KINSLRVESLVNEYLKTNRLECLPEDSLGEAVVNFVEKDDRDAIKECV 480
Query: 469 QYNLQETRHKIAKDSDTAKFEEEDI 493
+ L + + + K T + E++I
Sbjct: 481 ETQLNKQINLLVKKRVTEENLEQEI 505
>sp|P32829|MRE11_YEAST Double-strand break repair protein MRE11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1
SV=2
Length = 692
Score = 337 bits (863), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 195/549 (35%), Positives = 313/549 (57%), Gaps = 50/549 (9%)
Query: 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS 70
+T+RIL+ TD H+GY E D I DS++ F E+ +A+ VD V+ GDLFH NKPS+
Sbjct: 7 DTIRILITTDNHVGYNENDPITGDDSWKTFHEVMMLAKNNNVDMVVQSGDLFHVNKPSKK 66
Query: 71 TLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHGNHD 129
+L + ++ LR C+ D+P + +++SD + F ++F +VNYEDP+FN+ +PVF I GNHD
Sbjct: 67 SLYQVLKTLRLCCMGDKPCELELLSDPSQVFHYDEFTNVNYEDPNFNISIPVFGISGNHD 126
Query: 130 DPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRD 189
D +G L +DIL A L+N+FGK++ +I V P+L +KGST +ALYGL +RD
Sbjct: 127 DASGDSLLCPMDILHATGLINHFGKVIESD----KIKVVPLLFQKGSTKLALYGLAAVRD 182
Query: 190 ERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFV 249
ERL R F+ V + P +E +WFN++ +HQN + E FLP FLD V
Sbjct: 183 ERLFRTFKD-GGVTFEVPTMRE----GEWFNLMCVHQNHTGHTNTAFLPEQFLPDFLDMV 237
Query: 250 VWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQY-RPTKIP 308
+WGHEHEC+ + P F + QPGSSVATSL E E++PK+V +L+IK + + T IP
Sbjct: 238 IWGHEHECIPNLVHNPIKNFDVLQPGSSVATSLCEAEAQPKYVFILDIKYGEAPKMTPIP 297
Query: 309 LTSVRPFEYTEIILKDEADIDPDDQNS----ILEHLDKVVRNLIERSSKKTVNR------ 358
L ++R F+ I L+D + P D+++ ++E +++++R+ E + +K +
Sbjct: 298 LETIRTFKMKSISLQDVPHLRPHDKDATSKYLIEQVEEMIRDANEETKQKLADDGEGDMV 357
Query: 359 SELKLPLVRIKVDYSG---------FMTINPQRFGQKYVGKVANPQDILIFSKS------ 403
+EL PL+R++VDYS + NP+RF ++VG+VAN +++ F K
Sbjct: 358 AELPKPLIRLRVDYSAPSNTQSPIDYQVENPRRFSNRFVGRVANGNNVVQFYKKRSPVTR 417
Query: 404 SKKSKAEAKI---DDFERLRPEELNQQNIEALVAE--NNLKMEIIPVNDLDVALHNFVNK 458
SKKS D E+L E + ++ LV + N +++ ++P L+ A+ FV+K
Sbjct: 418 SKKSGINGTSISDRDVEKLFSESGGELEVQTLVNDLLNKMQLSLLPEVGLNEAVKKFVDK 477
Query: 459 DDRLAFYSCVQYNLQETRHKIAKDSDTAKFEEEDIILKVGESLEERLKE--RSNHSKDAP 516
D++ A + H+I+ + EE + E ++ +K+ R+N + P
Sbjct: 478 DEKTALKEFIS-------HEISNEVGILSTNEEFLRTDDAEEMKALIKQVKRANSVRPTP 530
Query: 517 QSTSNAASF 525
++ +F
Sbjct: 531 PKENDETNF 539
>sp|Q23255|MRE11_CAEEL Double-strand break repair protein mre-11 OS=Caenorhabditis elegans
GN=mre-11 PE=1 SV=2
Length = 728
Score = 316 bits (810), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 180/444 (40%), Positives = 265/444 (59%), Gaps = 45/444 (10%)
Query: 2 GQQPREDIA-NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60
G +P D + + ++ILVATD H GY E D+ FEE+ IA +++VD +LLGGD
Sbjct: 54 GDEPAHDESEDIIKILVATDIHCGYGENKANIHMDAVNTFEEVLQIATEQKVDMILLGGD 113
Query: 61 LFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGL 119
LFHEN PSR + ++LR++CLN P+ + +SD +VNF Q+ FGHVNY D + NVGL
Sbjct: 114 LFHENNPSREVQHRVTQLLRQYCLNGNPIALEFLSDASVNFNQSVFGHVNYYDQNLNVGL 173
Query: 120 PVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAV 179
P+F+IHGNHDD +G L+A+D+L LVN FGK S + E V PIL+RKG T +
Sbjct: 174 PIFTIHGNHDDLSG-KGLTALDLLHESGLVNLFGKH----SNIQEFIVSPILLRKGETRL 228
Query: 180 ALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNR----VKTNPKN 235
ALYG+G+ RD+RL R F+ +++ ++RP A E DWFN+ VLHQNR + + N
Sbjct: 229 ALYGIGSQRDDRLVRAFKN-NSISFLRPNAGAE----DWFNLFVLHQNRPRRAMHRSTGN 283
Query: 236 AINEHFLPRFLDFVVWGHEHECLIDPQ-----EVPGMGFHLTQPGSSVATSLIEGESKPK 290
+ E +P+F D ++WGHEHEC DPQ E G GF++ QPGS+VATSL E+ K
Sbjct: 284 FLPESLIPQFFDLLIWGHEHECKPDPQYVASSEAVGDGFYILQPGSTVATSLTPEEALQK 343
Query: 291 HVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSILE----------HL 340
+ L++IK ++ IPL +VRP E++L D P IL+ ++
Sbjct: 344 NAFLIKIKGRKFASKPIPLQTVRPMVCDELLL----DKIPPGSRPILKTDRPKHTDGRYI 399
Query: 341 DKV-----VRNLIERSSKKTVNRSELKLPLVRIKVDYSG-FMTINP---QRFGQKYVGKV 391
D++ + +I + K R + +LPL+R+KV Y G ++ I P +R G +Y V
Sbjct: 400 DEIAIEAKINEMITTAKAKRRPR-QPELPLIRLKVIYDGDWLNITPANAKRIGLRYENVV 458
Query: 392 ANPQDILIFSKSSKKSKAEAKIDD 415
AN D++ K++K + + + ++
Sbjct: 459 ANAVDMVFIKKNNKPKEGKLQTEN 482
>sp|Q8SRV0|MRE11_ENCCU Double-strand break repair protein MRE11 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=MRE11 PE=3 SV=1
Length = 567
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 169/514 (32%), Positives = 268/514 (52%), Gaps = 76/514 (14%)
Query: 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
++IL+ +D HLGY E D + DS++ FEEI IA+++ VD VL GGDLFHEN+PSRS L
Sbjct: 1 MKILITSDNHLGYRESDPVLLDDSYDTFEEILGIAQRERVDLVLQGGDLFHENRPSRSCL 60
Query: 73 VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132
+ I + RR+C+ + + S+ A+NF D + + +PV SIHGNHDDP+
Sbjct: 61 NRTIGLFRRYCIGNERSGLR--SNLALNFH---------DQNIGISIPVVSIHGNHDDPS 109
Query: 133 GVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERL 192
G+ +S +DIL + LVNY GK L + I VYP+L+ K VA+YGLG+I+D RL
Sbjct: 110 GISMVSPIDILQSAGLVNYIGKYNL----IDRIDVYPLLLEK-EYRVAIYGLGHIKDRRL 164
Query: 193 NRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF----LPRFLDF 248
RMF V + RPE + W+N+L+LHQNR+ P+ EHF + F D
Sbjct: 165 YRMFCEGRIV-FHRPEDYD-----SWYNVLILHQNRI---PRE--KEHFSSDLVEGFFDL 213
Query: 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIP 308
+V+GHEHE ++ V G + QPGS+V TSL EGE K+ +L I E + +
Sbjct: 214 IVYGHEHESMV----VKGDCL-ILQPGSTVRTSLCEGERHDKYAYILRIGE-ECTLEHVK 267
Query: 309 LTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVR---------NLIERSSKKTVNRS 359
L SVRP + +++ +++ +N I +D + I+ +K+ R
Sbjct: 268 LRSVRPLLLDTLRIEERDNVEEKVENKIRGMIDLGRKKESLFNKEITAIDVDTKRFKCRG 327
Query: 360 E-------------------LKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIF 400
+ ++PLV++K++ G ++ RF ++ G VANP D+L
Sbjct: 328 DSNEACGAGPVCKGYQLEEKTRIPLVKLKIELCGDEVLDKHRFSAQFKGLVANPSDMLTI 387
Query: 401 SKSSKKSKAEAKIDDFERLRPEELNQQNIEALVAENNLKMEIIPVNDLDVALHNFVNKDD 460
S+ +++ + ER+ ++ ++ + N++ ++ +L FV K D
Sbjct: 388 SRKTRRREEVETQPMAERVEISQILRKIL------GNVEFGVLSRLGFSESLDEFV-KGD 440
Query: 461 RLAFYSCVQYNLQETRHKIAKDSDTAKFEEEDII 494
AF V+ N++ K+ D + +ED+I
Sbjct: 441 SNAFMGMVRKNIE----KVVNAVDHSSIVDEDVI 470
>sp|O26641|MRE11_METTH DNA double-strand break repair protein Mre11 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=mre11 PE=3 SV=1
Length = 587
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 133/317 (41%), Gaps = 77/317 (24%)
Query: 19 TDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEI 78
+DCHLG + ++R + FEAF A QK+VDF+++ GDLFH N P+ +E
Sbjct: 177 SDCHLGAQKHPDLRELE-FEAFRMALDDALQKDVDFMIIAGDLFHSNIPN-------MET 228
Query: 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD-DPAGVDNL 137
++R L R V+ G+P++ +G+HD P+ +
Sbjct: 229 VKRATLELRRVR-------------------------EAGVPIYVNYGSHDYSPS---ST 260
Query: 138 SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQ 197
S +DIL + +++ + + G E TV + G+ L G +
Sbjct: 261 SMIDILESAGVIDKVVRPIPGKKLGLEFTVDE---KTGAKITGLSGRS-----------R 306
Query: 198 TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKN-----AINEHFLPRFLDFVVWG 252
T A +M+ + +E + D F I + H + P + +++ + PR ++ G
Sbjct: 307 TLEAEYFMKLD-REALEAEDGFRIFLFHSAITQFKPVDLADMESVDLNLFPRGFEYYAGG 365
Query: 253 HEHE--CLIDPQEVPGMGFHLTQPGS---SVATSLIE---GESKPKHVLLLEIKENQYRP 304
H H C I+ P + PG+ S A L E GE++ + L+E + P
Sbjct: 366 HVHRKGCYIEEGYGP-----IVYPGTLFGSYAGDLEENARGETRGYY--LVEFTDRAREP 418
Query: 305 TKIPLTSVRP--FEYTE 319
+RP FEY E
Sbjct: 419 E---FREIRPAEFEYIE 432
>sp|O29231|MRE11_ARCFU DNA double-strand break repair protein Mre11 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=mre11 PE=3 SV=1
Length = 443
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 155/353 (43%), Gaps = 66/353 (18%)
Query: 19 TDCHLGYMEKDEIRRHDSF-EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + ++ R + F +AF+ I A + DFV++ GDLFH + PS T+ +A+E
Sbjct: 7 ADVHLGYEQYNQPWRAEDFAKAFKVIAEKAVESNADFVVIAGDLFHRSLPSPRTIKEAVE 66
Query: 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNL 137
L F+ + +PVF++ GNHD + ++
Sbjct: 67 TLWM-------------------FRKE-------------NIPVFAVEGNHDKTS--RDI 92
Query: 138 SAVDILSACNLVNYFG--KMVLGGSGVGEITVYPILIRKGST-AVALYGLGNIRDERLNR 194
SA +L + L+N G + + G V + + + + KG V + G +R
Sbjct: 93 SAYHLLESLGLLNVLGLRRNPVRGENVESLRIQNVYLVKGVVDDVEILG------DRHRS 146
Query: 195 MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQN-----RVKTNPKNAINEHFLPRFLDFV 249
+Q + ++P++ + ++LVLHQ + + + + LP +
Sbjct: 147 KWQLEKVLPLLKPQSDK--------SVLVLHQAVKEVVDIDLDMAYELTINDLPE-ASYY 197
Query: 250 VWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPL 309
+GH H P+ G + PGS L E ++ L +K+ R I +
Sbjct: 198 AFGHIHL----PKIYEFDGKAIAYPGSVERYDLREASKIVRYRDELVLKDG-IRKGFILV 252
Query: 310 TSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELK 362
+ RP E+ EI ++ D++ +D++ +E L+K ++ R+ K+ + ++LK
Sbjct: 253 KNFRP-EFVEIETRELYDVEIEDES--VEGLEKKFLEVLGRADKEGIMVAKLK 302
>sp|Q8U1N9|MRE11_PYRFU DNA double-strand break repair protein Mre11 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=mre11
PE=1 SV=2
Length = 426
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 35/136 (25%)
Query: 19 TDCHLGYMEKDEIRRHDSF-EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + + +R + F EAF+ IA Q+ VDF+L+ GDLFH ++PS TL KAI
Sbjct: 7 ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIA 66
Query: 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNL 137
+L Q+ + ++ PVF+I GNHD
Sbjct: 67 LL------------QIPKEHSI--------------------PVFAIEGNHDRTQ--RGP 92
Query: 138 SAVDILSACNLVNYFG 153
S +++L LV G
Sbjct: 93 SVLNLLEDFGLVYVIG 108
>sp|Q8TRL2|MRE11_METAC DNA double-strand break repair protein Mre11 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=mre11 PE=3 SV=1
Length = 614
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 39/159 (24%)
Query: 13 VRILVATDCHLGYME-KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
+RIL D HLGY + E+RR D F+AFE + A +VD V+ GDLF P+
Sbjct: 5 IRILHTADTHLGYRQYHSEVRRQDFFKAFETVIQDAVDMQVDAVVHAGDLFDSRNPTLED 64
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
L++ + IL R +AV+ +P F I GNH+
Sbjct: 65 LLETMNILSRL--------------KAVD------------------IPFFGIVGNHE-- 90
Query: 132 AGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170
N +D+ L GK VG T+Y I
Sbjct: 91 -SKQNTQWLDLFEEMGLAERLGKT---PKLVGNTTIYGI 125
>sp|Q97WG9|MRE11_SULSO DNA double-strand break repair protein Mre11 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=mre11 PE=3 SV=1
Length = 381
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 69/250 (27%)
Query: 13 VRILVATDCHLGYMEKDEIRRH-DSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
V+IL +D HLG + + R D ++ F ++ IA ++ VD ++ GDLF + P+ +
Sbjct: 2 VQILHISDTHLGKRQYSLVEREKDIYDIFSQLVDIAIKEHVDVIIHSGDLFDVSSPTTNA 61
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
LV AI+IL+R L D V +P SI G+HD P
Sbjct: 62 LVMAIKILKR--LKD------------------------------VNIPFLSIPGDHDTP 89
Query: 132 AGVDNLSAVDILSACNLV---NYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIR 188
L +ILS +L+ NY ++ G + +YG+ +I
Sbjct: 90 KRKGYLIPHNILSELDLIKILNYEKPYIIKG-------------------IEVYGIPHIP 130
Query: 189 DERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---INEHFLPRF 245
+ + A+ +RP++ +IL+LHQ + P + + LP+
Sbjct: 131 TVSKSILVS---ALSALRPKSSR--------SILLLHQGVKQILPYDGSWQMELGSLPKG 179
Query: 246 LDFVVWGHEH 255
+ GH H
Sbjct: 180 FGYYALGHIH 189
>sp|Q8PUY5|MRE11_METMA DNA double-strand break repair protein Mre11 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=mre11 PE=3 SV=1
Length = 617
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 39/159 (24%)
Query: 13 VRILVATDCHLGYME-KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
+RIL D HLGY + E+RR D F+AFE + A +VD V+ GDLF P+
Sbjct: 5 IRILHTADTHLGYRQYHSEVRRQDFFKAFETVIKDAVDMQVDAVVHAGDLFDSRNPTLED 64
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
L++ + +L R + + +P F I GNH+
Sbjct: 65 LLETMNVLSRLKVAN--------------------------------IPFFGIVGNHESK 92
Query: 132 AGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170
L D+ L GK VG++ +Y I
Sbjct: 93 QSTQWL---DLFEEMGLAGRLGK---APKMVGDVAIYGI 125
>sp|Q96YR6|MRE11_SULTO DNA double-strand break repair protein Mre11 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=mre11 PE=3 SV=1
Length = 387
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 62/246 (25%)
Query: 14 RILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
+IL +D HLG + + + R D ++ F ++ IA ++ VD ++ GDLF N P
Sbjct: 5 QILHISDTHLGKRQYNLDFREQDVYDTFSQLIDIAIKEHVDGIIHTGDLFDINDPPNKAE 64
Query: 73 VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132
+ AI L+R G+P I G+HD P
Sbjct: 65 IVAIRELKRLK--------------------------------EAGIPFIVIAGDHDSPK 92
Query: 133 GVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERL 192
+ IL +L+ + K +GEIT+Y G + V N+ ERL
Sbjct: 93 KFTAIYPQKILEEFDLIKFLSKPD-TPYKLGEITIY------GISHVP-----NVAKERL 140
Query: 193 NRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---INEHFLPRFLDFV 249
+ ++PE ++ +IL+LHQ + P I LP+ +
Sbjct: 141 KELLSR------LKPENKK--------SILLLHQGLKEVLPYEGAWQIQIDDLPKAFSYY 186
Query: 250 VWGHEH 255
GH H
Sbjct: 187 ALGHFH 192
>sp|Q9UZC9|MRE11_PYRAB DNA double-strand break repair protein Mre11 OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=mre11 PE=3 SV=2
Length = 415
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 33/112 (29%)
Query: 19 TDCHLGYMEKDEIRRHDSF-EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + + +R + F +AFE+ I ++VDF+++ GDLF+ ++PS T+ A++
Sbjct: 9 ADVHLGYEQFNRSQRAEEFAKAFEDAIKICVDEKVDFIVIAGDLFNSSRPSPGTIKTAVK 68
Query: 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129
IL Q+ D +PVF+I GNHD
Sbjct: 69 IL------------QIPRDN--------------------NIPVFAIEGNHD 88
>sp|D4GUK0|MRE11_HALVD DNA double-strand break repair protein Mre11 OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=mre11 PE=1 SV=1
Length = 441
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 14 RILVATDCHLGYMEKDEI-RRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
R++ D HLGY + RR D +AFE + + A +VD V+ GDL+H+ +P L
Sbjct: 3 RVIHTGDTHLGYQQYHSPERRQDFLDAFERVVADALDGDVDAVVHAGDLYHDRRPELPDL 62
Query: 73 VKAIEILRRHCLNDRPVQFQVV--------SDQAVNFQNKFGHVNY--EDPHFNVGLPVF 122
+ + LRR L+D + F + Q ++ + G DPH G+ +
Sbjct: 63 LGTLAALRR--LDDAGIPFLAIVGNHESTRGGQWLDLFERLGLATRLGRDPHVVGGVAFY 120
Query: 123 SI 124
+
Sbjct: 121 GL 122
>sp|O58686|MRE11_PYRHO DNA double-strand break repair protein Mre11 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=mre11 PE=3 SV=1
Length = 413
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 19 TDCHLGYMEKDEIRRHDSF-EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77
D HLGY + ++ +R + F F++ + ++ VDF+++ GDLF+ ++PS T+ AI+
Sbjct: 7 ADVHLGYEQFNKPQRAEEFANTFKKALEMCVKESVDFIIIAGDLFNSSRPSPGTIKTAIK 66
Query: 78 ILRRHCLNDRPV 89
+L+ N+ PV
Sbjct: 67 LLQIPKENNIPV 78
>sp|Q9HRW4|MRE11_HALSA DNA double-strand break repair protein Mre11 OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=mre11 PE=3 SV=1
Length = 387
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 14 RILVATDCHLGYMEKDEI-RRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
R++ D HLGY + RR D +AF+ + + A + VD V+ GDL+H+ +P +
Sbjct: 3 RVIHTGDTHLGYQQYHAPQRRQDFLDAFDAVITDAIDEGVDAVVHAGDLYHDRQPGLRDI 62
Query: 73 VKAIEILRRHCLNDRPVQFQVV 94
+ I +LR L D + F V
Sbjct: 63 LDTIALLR--PLQDADIPFLAV 82
>sp|Q9YFY8|MRE11_AERPE DNA double-strand break repair protein Mre11 OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=mre11 PE=3 SV=1
Length = 409
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 33/120 (27%)
Query: 14 RILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72
++L D HLG E RR D F +FE + A + D VL+ GDLF + K +
Sbjct: 3 KVLHVADVHLGARPYGLEERRDDIFRSFEFVVETALKDRPDAVLIAGDLFDKPKLPLRDV 62
Query: 73 VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132
+A+E++R L D G+PV + HG HD P+
Sbjct: 63 KQAVELVR--ALTD------------------------------AGIPVLAAHGEHDTPS 90
>sp|Q97C75|MRE11_THEVO DNA double-strand break repair protein Mre11 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=mre11 PE=3 SV=1
Length = 374
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 44/150 (29%)
Query: 12 TVRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS 70
VR L +D H+G E R D ++ F+E IA ++VDF++ GDLF P
Sbjct: 1 MVRFLHMSDTHIGAKSLTIEEREQDYYDTFQEAVEIAIDEKVDFIIHSGDLFDTWIPGN- 59
Query: 71 TLVKAIEILRRHC--LNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNH 128
+++++ R LNDR + PVF + G+H
Sbjct: 60 ---RSMKVFRDAMMKLNDRQI------------------------------PVFYVFGDH 86
Query: 129 DDPAGVDNLSAVDILSACNLVNYFGKMVLG 158
D P SA + ++ G +LG
Sbjct: 87 DRPRRNSE-------SAAGIFDFLGLHILG 109
>sp|Q8NKQ0|MRE11_SULAC DNA double-strand break repair protein Mre11 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=mre11 PE=3 SV=1
Length = 382
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 91/247 (36%), Gaps = 62/247 (25%)
Query: 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71
+++L +D HLG + + E R D ++ F ++ IA + V V+ GDLF N P
Sbjct: 1 MQLLHISDTHLGKRQYNLESREKDVYDTFTQLIDIAINEHVKAVIHTGDLFDVNNPPNRA 60
Query: 72 LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131
+ AI+ L+R L D +P I G+HD P
Sbjct: 61 KLHAIKELKR--LKDH------------------------------NIPFICIAGDHDSP 88
Query: 132 AGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDER 191
+ + IL NL+ K I R V +YG+ +I +
Sbjct: 89 KRKEEIYPQRILEEFNLIKILQK---------------IDNRVKLENVEVYGISHISNVS 133
Query: 192 LNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---INEHFLPRFLDF 248
+N + + V +PE ++ +IL+LHQ P I LP+
Sbjct: 134 VNDLKEQLSKV---KPETRK--------SILMLHQGIRTYLPYQGAWQIELSDLPKGFSL 182
Query: 249 VVWGHEH 255
GH H
Sbjct: 183 YAVGHLH 189
>sp|A0JP43|EFCB5_MOUSE EF-hand calcium-binding domain-containing protein 5 OS=Mus musculus
GN=Efcab5 PE=2 SV=2
Length = 1406
Score = 33.1 bits (74), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 30/221 (13%)
Query: 482 DSDTAKFEEED---IILKVGESLEERLKERSNHSKDAPQSTSNAASFEDIRSKTAAGVGT 538
D D K ED ++LK+ + E+L + +KD PQ + D
Sbjct: 222 DMDIKKHIYEDFDALLLKMNMLVAEKLAGKLAENKDLPQQQRDQELSSD----------- 270
Query: 539 AISFSDDEDTTQISDTKSATRGRKWSSAASRSSRGALESDKSKT-STRGRGRGRGRGRGR 597
S ++ E TQ++ S R R+ S +G ++ SK ++RG +G R
Sbjct: 271 --STTEPETATQLT---SQQRSRRVSLTGQGQGKGPRKTSASKQGASRGSVAEQGSRRSS 325
Query: 598 GANNLKQTTLDASLGFR------QSQRSASVAAKAAVQSLVDEEDNIASASSEEAEKYEV 651
G N +Q A G R Q+Q+ SVA + + +S E+ + +E+ +
Sbjct: 326 GVNQTQQRGSVAEQGSRRSSAVEQTQQRGSVAEQGSRRSSTVEQTRQRGSVAEQGSRR-- 383
Query: 652 NEVDDSSEDDASLLSKGSKRP--VPRGKGRGATPSKRGRKS 690
+ + ++ S+ +GS+R V + + RG+ + R+S
Sbjct: 384 SSTVEQTQRRGSVAEQGSRRSSGVNQTQQRGSVAEQGSRRS 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,542,699
Number of Sequences: 539616
Number of extensions: 11989282
Number of successful extensions: 44599
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 455
Number of HSP's that attempted gapping in prelim test: 42000
Number of HSP's gapped (non-prelim): 2059
length of query: 734
length of database: 191,569,459
effective HSP length: 125
effective length of query: 609
effective length of database: 124,117,459
effective search space: 75587532531
effective search space used: 75587532531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)