Query 004713
Match_columns 734
No_of_seqs 398 out of 2188
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 11:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2310 DNA repair exonuclease 100.0 5E-137 1E-141 1119.6 45.5 573 8-619 9-594 (646)
2 TIGR00583 mre11 DNA repair pro 100.0 2.5E-91 5.4E-96 768.3 39.0 386 10-404 1-404 (405)
3 COG0420 SbcD DNA repair exonuc 100.0 4.3E-34 9.4E-39 313.6 26.4 262 13-324 1-273 (390)
4 PRK10966 exonuclease subunit S 100.0 3.8E-32 8.3E-37 300.8 30.6 316 13-403 1-347 (407)
5 PF04152 Mre11_DNA_bind: Mre11 100.0 7.4E-33 1.6E-37 274.4 10.3 154 302-455 1-175 (175)
6 PHA02546 47 endonuclease subun 100.0 3.8E-30 8.2E-35 278.8 31.7 232 13-320 1-242 (340)
7 TIGR00619 sbcd exonuclease Sbc 100.0 9.5E-28 2.1E-32 250.3 18.7 228 13-291 1-253 (253)
8 cd00840 MPP_Mre11_N Mre11 nucl 99.9 4.1E-26 8.9E-31 228.6 20.3 215 14-283 1-223 (223)
9 cd07385 MPP_YkuE_C Bacillus su 99.8 6.1E-18 1.3E-22 170.6 17.6 169 12-260 1-169 (223)
10 PRK11340 phosphodiesterase Yae 99.7 4.3E-16 9.3E-21 164.2 17.3 171 9-260 46-217 (271)
11 PRK11148 cyclic 3',5'-adenosin 99.6 2.8E-14 6.2E-19 150.2 17.7 86 9-131 11-98 (275)
12 PF12850 Metallophos_2: Calcin 99.6 4.1E-15 8.9E-20 140.9 6.3 75 218-300 81-156 (156)
13 cd07402 MPP_GpdQ Enterobacter 99.6 2.1E-14 4.6E-19 146.4 12.0 198 14-278 1-211 (240)
14 cd07400 MPP_YydB Bacillus subt 99.5 4.5E-14 9.8E-19 133.5 12.0 80 15-130 1-80 (144)
15 cd07395 MPP_CSTP1 Homo sapiens 99.5 8.6E-13 1.9E-17 137.4 20.8 227 10-308 2-261 (262)
16 PRK09453 phosphodiesterase; Pr 99.5 9.9E-13 2.2E-17 130.3 17.8 172 13-315 1-176 (182)
17 cd07388 MPP_Tt1561 Thermus the 99.5 7.5E-13 1.6E-17 136.6 16.4 201 11-301 3-220 (224)
18 TIGR00040 yfcE phosphoesterase 99.5 1E-12 2.2E-17 127.1 15.1 52 244-303 105-156 (158)
19 cd00841 MPP_YfcE Escherichia c 99.5 1.2E-12 2.5E-17 125.6 14.3 54 244-306 101-154 (155)
20 PF00149 Metallophos: Calcineu 99.4 1.1E-13 2.4E-18 126.3 5.7 79 13-132 1-79 (200)
21 cd07394 MPP_Vps29 Homo sapiens 99.4 5.2E-12 1.1E-16 125.8 16.7 63 244-311 105-168 (178)
22 cd07392 MPP_PAE1087 Pyrobaculu 99.4 1.1E-12 2.5E-17 127.9 10.5 176 15-275 1-188 (188)
23 PRK05340 UDP-2,3-diacylglucosa 99.4 4.9E-12 1.1E-16 131.0 15.6 81 13-132 1-84 (241)
24 cd07396 MPP_Nbla03831 Homo sap 99.4 1.3E-11 2.8E-16 129.7 17.7 86 13-133 1-88 (267)
25 COG2129 Predicted phosphoester 99.4 1.2E-11 2.5E-16 126.5 16.5 202 11-306 2-223 (226)
26 cd07401 MPP_TMEM62_N Homo sapi 99.4 2E-11 4.3E-16 127.9 17.0 214 15-278 2-233 (256)
27 cd07393 MPP_DR1119 Deinococcus 99.3 1.4E-11 3E-16 127.2 14.9 79 15-131 1-84 (232)
28 cd07383 MPP_Dcr2 Saccharomyces 99.3 1.3E-11 2.8E-16 123.8 13.7 58 11-68 1-58 (199)
29 TIGR03729 acc_ester putative p 99.3 3.8E-11 8.3E-16 124.0 13.1 46 14-65 1-46 (239)
30 cd07399 MPP_YvnB Bacillus subt 99.3 2E-10 4.4E-15 117.2 17.5 80 13-129 1-80 (214)
31 COG0622 Predicted phosphoester 99.2 1.8E-10 3.9E-15 114.6 15.1 59 244-310 108-166 (172)
32 TIGR01854 lipid_A_lpxH UDP-2,3 99.2 5.1E-11 1.1E-15 122.7 11.6 79 15-132 1-82 (231)
33 COG1408 Predicted phosphohydro 99.1 4.4E-10 9.4E-15 120.0 13.3 94 8-147 40-134 (284)
34 cd00839 MPP_PAPs purple acid p 99.1 2.1E-09 4.6E-14 113.3 17.7 81 10-133 2-83 (294)
35 cd07378 MPP_ACP5 Homo sapiens 99.1 5.7E-09 1.2E-13 109.3 19.9 104 201-309 153-275 (277)
36 cd00845 MPP_UshA_N_like Escher 99.1 1.4E-09 3.1E-14 112.5 14.2 213 13-277 1-224 (252)
37 cd07397 MPP_DevT Myxococcus xa 99.1 1.3E-09 2.8E-14 113.5 13.2 65 13-133 1-65 (238)
38 COG1409 Icc Predicted phosphoh 99.1 1.2E-09 2.6E-14 113.2 12.2 80 13-133 1-80 (301)
39 PRK04036 DNA polymerase II sma 99.0 1.3E-08 2.8E-13 116.7 19.9 51 8-65 239-298 (504)
40 cd07386 MPP_DNA_pol_II_small_a 99.0 2.1E-09 4.5E-14 111.5 11.6 46 16-65 2-49 (243)
41 cd07379 MPP_239FB Homo sapiens 99.0 2.2E-09 4.8E-14 101.3 10.3 47 14-81 1-47 (135)
42 cd07391 MPP_PF1019 Pyrococcus 99.0 1E-09 2.2E-14 108.1 7.7 83 16-131 1-88 (172)
43 cd07404 MPP_MS158 Microscilla 99.0 2.1E-09 4.6E-14 104.4 9.4 42 15-67 1-42 (166)
44 PF14582 Metallophos_3: Metall 98.9 2.6E-09 5.6E-14 109.6 9.2 228 12-305 5-253 (255)
45 cd07410 MPP_CpdB_N Escherichia 98.9 1.6E-08 3.5E-13 106.8 14.8 214 13-277 1-247 (277)
46 cd07398 MPP_YbbF-LpxH Escheric 98.9 2.9E-09 6.2E-14 107.2 7.2 44 16-65 1-44 (217)
47 cd07390 MPP_AQ1575 Aquifex aeo 98.8 1.2E-08 2.6E-13 100.3 10.1 52 16-67 2-58 (168)
48 TIGR00024 SbcD_rel_arch putati 98.8 7.2E-09 1.6E-13 107.3 7.9 83 13-131 15-102 (225)
49 cd07406 MPP_CG11883_N Drosophi 98.8 3.1E-08 6.7E-13 104.0 12.5 212 13-277 1-223 (257)
50 cd07411 MPP_SoxB_N Thermus the 98.8 9.2E-08 2E-12 100.6 13.5 226 13-298 1-248 (264)
51 cd07408 MPP_SA0022_N Staphyloc 98.7 3.3E-07 7.1E-12 96.1 16.8 217 13-276 1-231 (257)
52 cd07412 MPP_YhcR_N Bacillus su 98.7 2.4E-07 5.1E-12 99.0 15.2 52 13-65 1-56 (288)
53 cd00838 MPP_superfamily metall 98.7 8.4E-08 1.8E-12 86.2 10.0 69 16-129 1-69 (131)
54 cd08165 MPP_MPPE1 human MPPE1 98.6 7.8E-08 1.7E-12 93.9 8.1 83 16-131 1-89 (156)
55 cd07409 MPP_CD73_N CD73 ecto-5 98.6 5.4E-07 1.2E-11 95.9 14.0 199 13-258 1-219 (281)
56 COG2908 Uncharacterized protei 98.5 1.4E-07 3E-12 97.7 7.2 79 16-133 1-82 (237)
57 KOG1432 Predicted DNA repair e 98.5 1E-06 2.2E-11 95.0 13.1 103 6-144 47-157 (379)
58 PTZ00422 glideosome-associated 98.5 1E-05 2.2E-10 90.1 20.7 100 217-320 213-327 (394)
59 PLN02533 probable purple acid 98.5 1.3E-06 2.9E-11 98.4 13.9 43 10-65 137-179 (427)
60 cd07384 MPP_Cdc1_like Saccharo 98.5 3E-07 6.4E-12 91.3 7.4 90 16-131 1-100 (171)
61 cd07403 MPP_TTHA0053 Thermus t 98.5 5.1E-07 1.1E-11 85.4 8.1 33 16-62 1-33 (129)
62 KOG2679 Purple (tartrate-resis 98.4 4.5E-06 9.7E-11 87.8 14.3 254 8-310 39-318 (336)
63 cd08163 MPP_Cdc1 Saccharomyces 98.4 4E-06 8.6E-11 88.6 13.5 57 48-133 42-99 (257)
64 cd07405 MPP_UshA_N Escherichia 98.4 1.7E-05 3.7E-10 84.8 17.7 201 13-259 1-223 (285)
65 PRK09419 bifunctional 2',3'-cy 98.3 4.9E-06 1.1E-10 104.3 15.3 208 9-276 657-897 (1163)
66 cd08164 MPP_Ted1 Saccharomyces 98.3 2.2E-05 4.7E-10 79.9 15.8 30 41-70 33-63 (193)
67 COG1407 Predicted ICC-like pho 98.3 2E-06 4.3E-11 89.5 7.6 57 12-68 19-80 (235)
68 cd00842 MPP_ASMase acid sphing 98.2 6.4E-06 1.4E-10 87.6 9.1 34 35-68 50-85 (296)
69 PHA02239 putative protein phos 98.1 9.1E-06 2E-10 84.9 8.4 53 13-77 1-55 (235)
70 COG0737 UshA 5'-nucleotidase/2 98.1 0.0003 6.5E-09 81.1 20.8 237 6-299 20-279 (517)
71 PRK09420 cpdB bifunctional 2', 98.0 0.00034 7.3E-09 83.1 20.4 56 10-65 23-83 (649)
72 cd07407 MPP_YHR202W_N Saccharo 98.0 0.00011 2.3E-09 78.9 14.0 57 216-277 187-248 (282)
73 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.0 0.00012 2.5E-09 77.9 14.0 17 116-132 71-87 (262)
74 PRK09418 bifunctional 2',3'-cy 97.9 0.00026 5.6E-09 85.4 18.0 56 10-65 37-97 (780)
75 PRK09558 ushA bifunctional UDP 97.9 0.00011 2.4E-09 85.4 14.0 206 7-258 29-258 (551)
76 COG1311 HYS2 Archaeal DNA poly 97.9 9.2E-05 2E-09 83.5 12.6 55 6-64 219-275 (481)
77 TIGR01390 CycNucDiestase 2',3' 97.9 0.00026 5.6E-09 83.7 16.9 54 12-65 2-60 (626)
78 cd08166 MPP_Cdc1_like_1 unchar 97.9 3.6E-05 7.8E-10 78.4 8.3 56 47-131 38-93 (195)
79 cd08162 MPP_PhoA_N Synechococc 97.9 0.00021 4.6E-09 77.7 14.8 47 13-65 1-52 (313)
80 PRK09419 bifunctional 2',3'-cy 97.9 0.00032 7E-09 88.3 18.2 55 11-65 40-99 (1163)
81 PRK00166 apaH diadenosine tetr 97.8 3.3E-05 7.1E-10 82.6 7.1 68 13-131 1-69 (275)
82 cd07425 MPP_Shelphs Shewanella 97.8 4.4E-05 9.5E-10 78.2 7.2 72 16-131 1-80 (208)
83 PRK11907 bifunctional 2',3'-cy 97.8 0.0014 3.1E-08 79.4 20.7 56 10-65 113-173 (814)
84 TIGR01530 nadN NAD pyrophospha 97.8 0.00041 8.8E-09 80.9 15.6 195 13-259 1-220 (550)
85 cd07387 MPP_PolD2_C PolD2 (DNA 97.8 0.0011 2.5E-08 70.3 17.2 46 14-66 1-57 (257)
86 COG4186 Predicted phosphoester 97.8 0.00032 6.9E-09 68.9 11.8 66 11-81 2-71 (186)
87 KOG3662 Cell division control 97.7 0.00025 5.3E-09 79.2 10.8 99 5-135 41-148 (410)
88 cd07424 MPP_PrpA_PrpB PrpA and 97.6 0.00013 2.7E-09 74.2 6.7 44 13-68 1-45 (207)
89 cd07423 MPP_PrpE Bacillus subt 97.6 0.00012 2.7E-09 75.8 6.6 53 13-81 1-63 (234)
90 cd00144 MPP_PPP_family phospho 97.5 0.0002 4.3E-09 72.7 6.1 68 16-131 1-68 (225)
91 TIGR03767 P_acnes_RR metalloph 97.4 0.0024 5.1E-08 73.0 14.9 105 200-315 323-450 (496)
92 cd07422 MPP_ApaH Escherichia c 97.3 0.00045 9.8E-09 73.3 6.5 66 15-131 1-67 (257)
93 PRK11439 pphA serine/threonine 97.3 0.00039 8.6E-09 71.5 5.7 52 13-80 17-69 (218)
94 PRK13625 bis(5'-nucleosyl)-tet 97.2 0.00063 1.4E-08 71.3 6.8 51 13-75 1-60 (245)
95 PRK09968 serine/threonine-spec 97.2 0.00056 1.2E-08 70.5 6.2 44 14-69 16-60 (218)
96 KOG1378 Purple acid phosphatas 97.0 0.0053 1.2E-07 69.4 12.2 80 8-132 143-222 (452)
97 TIGR00668 apaH bis(5'-nucleosy 96.9 0.0016 3.6E-08 69.8 6.8 53 13-81 1-54 (279)
98 COG1768 Predicted phosphohydro 96.9 0.0059 1.3E-07 61.5 9.7 42 216-257 157-199 (230)
99 cd07382 MPP_DR1281 Deinococcus 96.7 0.026 5.7E-07 60.0 13.3 191 14-277 1-198 (255)
100 cd07413 MPP_PA3087 Pseudomonas 96.7 0.0036 7.7E-08 64.8 6.6 50 16-81 2-59 (222)
101 cd07421 MPP_Rhilphs Rhilph pho 96.6 0.0068 1.5E-07 65.6 8.2 52 14-81 3-60 (304)
102 smart00156 PP2Ac Protein phosp 96.2 0.011 2.5E-07 63.1 7.2 51 13-75 28-78 (271)
103 PF09587 PGA_cap: Bacterial ca 96.2 0.095 2.1E-06 54.9 14.0 137 116-259 73-230 (250)
104 PF04042 DNA_pol_E_B: DNA poly 96.1 0.012 2.5E-07 59.7 6.5 47 15-68 1-48 (209)
105 KOG3325 Membrane coat complex 96.1 0.012 2.7E-07 57.6 6.0 80 217-302 78-161 (183)
106 cd07381 MPP_CapA CapA and rela 96.0 0.073 1.6E-06 55.2 11.9 133 117-259 76-221 (239)
107 KOG3770 Acid sphingomyelinase 95.8 0.034 7.4E-07 64.7 9.4 95 10-131 136-263 (577)
108 cd07416 MPP_PP2B PP2B, metallo 95.7 0.026 5.7E-07 61.4 7.5 50 13-74 43-92 (305)
109 TIGR00282 metallophosphoestera 95.7 0.15 3.2E-06 54.7 12.8 182 13-266 1-190 (266)
110 smart00854 PGA_cap Bacterial c 95.4 0.24 5.1E-06 51.6 13.1 133 117-259 72-219 (239)
111 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.2 0.035 7.6E-07 59.9 6.1 48 14-73 43-90 (285)
112 cd07414 MPP_PP1_PPKL PP1, PPKL 94.9 0.055 1.2E-06 58.7 6.8 48 14-73 51-98 (293)
113 PTZ00480 serine/threonine-prot 94.8 0.05 1.1E-06 59.7 6.2 47 14-72 60-106 (320)
114 PTZ00239 serine/threonine prot 94.0 0.1 2.2E-06 57.0 6.3 48 14-73 44-91 (303)
115 PTZ00244 serine/threonine-prot 93.8 0.099 2.1E-06 56.8 5.8 46 15-72 54-99 (294)
116 cd07418 MPP_PP7 PP7, metalloph 93.7 0.14 3E-06 57.4 6.9 48 14-73 67-115 (377)
117 cd07420 MPP_RdgC Drosophila me 93.6 0.16 3.5E-06 55.8 6.9 48 14-73 52-100 (321)
118 cd07417 MPP_PP5_C PP5, C-termi 93.5 0.14 3E-06 56.2 6.4 52 12-75 59-111 (316)
119 cd07380 MPP_CWF19_N Schizosacc 93.4 0.15 3.3E-06 50.1 5.9 46 48-129 23-68 (150)
120 cd07419 MPP_Bsu1_C Arabidopsis 93.0 0.24 5.2E-06 54.1 7.1 48 14-73 49-104 (311)
121 KOG2863 RNA lariat debranching 92.7 0.45 9.7E-06 52.7 8.5 23 110-132 67-89 (456)
122 TIGR03768 RPA4764 metallophosp 91.6 0.83 1.8E-05 52.5 9.4 110 9-132 33-171 (492)
123 PF12235 FXR1P_C: Fragile X-re 87.3 0.23 5E-06 49.0 0.8 17 545-561 12-29 (155)
124 KOG4419 5' nucleotidase [Nucle 82.8 3.5 7.5E-05 48.6 7.6 57 10-66 40-102 (602)
125 PF05918 API5: Apoptosis inhib 71.5 1.3 2.8E-05 52.1 0.0 14 38-51 59-72 (556)
126 KOG3947 Phosphoesterases [Gene 69.3 27 0.00058 38.1 9.1 42 8-67 57-98 (305)
127 KOG3428 Small nuclear ribonucl 68.2 2.6 5.6E-05 39.4 1.2 9 586-594 97-105 (109)
128 KOG2476 Uncharacterized conser 66.1 12 0.00026 43.1 6.1 94 13-155 6-100 (528)
129 PF09423 PhoD: PhoD-like phosp 64.1 8.4 0.00018 44.0 4.6 42 10-63 103-144 (453)
130 PF05918 API5: Apoptosis inhib 62.5 2.5 5.4E-05 49.8 0.0 11 423-433 327-337 (556)
131 PTZ00235 DNA polymerase epsilo 62.3 30 0.00064 37.9 8.0 48 10-65 25-77 (291)
132 TIGR01769 GGGP geranylgeranylg 61.0 30 0.00065 36.0 7.5 57 38-132 11-67 (205)
133 PF06874 FBPase_2: Firmicute f 59.7 8.4 0.00018 45.9 3.6 37 42-82 175-211 (640)
134 PRK09982 universal stress prot 44.0 47 0.001 31.4 5.5 19 40-58 92-110 (142)
135 PF01884 PcrB: PcrB family; I 43.7 47 0.001 35.2 5.8 52 41-132 22-73 (230)
136 KOG0372 Serine/threonine speci 42.0 47 0.001 35.8 5.3 46 15-72 45-90 (303)
137 KOG0373 Serine/threonine speci 41.2 57 0.0012 34.6 5.8 52 15-78 48-99 (306)
138 COG1646 Predicted phosphate-bi 40.4 81 0.0018 33.6 6.8 55 40-132 30-84 (240)
139 TIGR01768 GGGP-family geranylg 40.3 75 0.0016 33.6 6.6 54 40-132 16-69 (223)
140 KOG0374 Serine/threonine speci 40.1 42 0.00091 37.4 5.0 72 14-132 60-132 (331)
141 PF07451 SpoVAD: Stage V sporu 35.7 45 0.00098 36.9 4.2 19 49-68 70-88 (329)
142 PRK15005 universal stress prot 35.2 83 0.0018 29.2 5.5 19 40-58 96-114 (144)
143 PF00072 Response_reg: Respons 35.2 1.3E+02 0.0028 26.1 6.5 53 39-130 31-83 (112)
144 COG3855 Fbp Uncharacterized pr 34.6 41 0.00089 39.0 3.8 34 45-82 184-217 (648)
145 PF15231 VCX_VCY: Variable cha 34.2 31 0.00067 33.2 2.4 37 558-598 17-53 (147)
146 PF07355 GRDB: Glycine/sarcosi 29.6 1.5E+02 0.0032 33.5 7.0 52 10-71 48-99 (349)
147 PRK09968 serine/threonine-spec 29.3 44 0.00095 34.6 2.8 30 245-278 179-208 (218)
148 cd02812 PcrB_like PcrB_like pr 29.2 1.5E+02 0.0032 31.3 6.7 55 40-132 14-68 (219)
149 cd07424 MPP_PrpA_PrpB PrpA and 27.1 47 0.001 33.7 2.6 30 245-278 168-197 (207)
150 PF00582 Usp: Universal stress 27.1 1.7E+02 0.0036 25.8 5.9 23 39-61 90-112 (140)
151 PRK10116 universal stress prot 26.9 1.6E+02 0.0034 27.2 5.9 20 40-59 91-110 (142)
152 cd07389 MPP_PhoD Bacillus subt 26.4 1.8E+02 0.0039 29.5 6.7 20 116-135 87-106 (228)
153 TIGR02667 moaB_proteo molybden 25.9 2.3E+02 0.005 28.1 7.1 31 34-64 45-76 (163)
154 PRK04169 geranylgeranylglycery 25.5 1.7E+02 0.0036 31.2 6.3 48 45-132 26-74 (232)
155 COG2248 Predicted hydrolase (m 23.6 99 0.0021 33.6 4.2 59 10-83 174-235 (304)
156 PF05904 DUF863: Plant protein 23.1 35 0.00075 42.1 0.8 13 546-558 714-726 (805)
157 cd02071 MM_CoA_mut_B12_BD meth 22.3 4.6E+02 0.01 24.4 8.1 39 39-81 38-76 (122)
158 PF10686 DUF2493: Protein of u 22.3 2.1E+02 0.0045 24.8 5.2 39 11-60 2-40 (71)
159 cd02072 Glm_B12_BD B12 binding 22.3 3E+02 0.0066 26.6 6.9 40 39-82 38-77 (128)
160 TIGR00640 acid_CoA_mut_C methy 21.4 3.4E+02 0.0074 26.1 7.1 25 38-62 40-64 (132)
161 cd00019 AP2Ec AP endonuclease 20.6 3.6E+02 0.0078 28.4 7.8 70 12-83 59-129 (279)
162 TIGR03568 NeuC_NnaA UDP-N-acet 20.2 3.2E+02 0.0068 30.5 7.6 26 38-63 80-105 (365)
No 1
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-137 Score=1119.55 Aligned_cols=573 Identities=51% Similarity=0.853 Sum_probs=517.8
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCC
Q 004713 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (734)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~ 87 (734)
+-+++||||++||+||||.++|++|++|+|.+|+||+.+|.+++|||||++|||||+|+||+++|++|+++||+||+||+
T Consensus 9 D~entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdk 88 (646)
T KOG2310|consen 9 DFENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDK 88 (646)
T ss_pred ccccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCC
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccceeeechhhhhccc-ccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCcccee
Q 004713 88 PVQFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEIT 166 (734)
Q Consensus 88 p~~~e~lSd~~~~F~~-~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~ 166 (734)
||+||+||||++||.+ .|++|||+|||+|++||||.||||||+|+|.+.+||+|+|+.+|||||||++. ++++|.
T Consensus 89 P~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~----~id~I~ 164 (646)
T KOG2310|consen 89 PVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVS----EIDKID 164 (646)
T ss_pred ceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhcccc----CcceEE
Confidence 9999999999999986 59999999999999999999999999999999999999999999999999963 678999
Q ss_pred EEEEEEeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCccccccCCcCC
Q 004713 167 VYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246 (734)
Q Consensus 167 v~Pill~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~ 246 (734)
+.||+++||.++|||||||+++|+||.++|.+ ++|.|++|+.. .++|||+|++|||++.|.+++++||+++|.|+
T Consensus 165 vsPiLlqKG~tklALYGLg~irDeRL~R~Fk~-~~V~f~rPe~~----e~dWFNllvlHQNr~~h~~tn~lpE~flp~F~ 239 (646)
T KOG2310|consen 165 VSPILLQKGSTKLALYGLGSIRDERLYRMFKN-GKVTFLRPEEY----EDDWFNLLVLHQNRSKHRPTNFLPEQFLPDFL 239 (646)
T ss_pred EEeeeeccCceeEEEeeccccchHHHHHHHHh-CceEEecCccc----cccceeeEEEeecccCCCCcccCcHhHhhhhh
Confidence 99999999999999999999999999999998 68999999864 37999999999999999999999999999999
Q ss_pred CEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECCCCCcEEEEEEEeccCC
Q 004713 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEA 326 (734)
Q Consensus 247 DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~~e~IpL~tvRpf~~~eI~L~~~~ 326 (734)
|+|+|||+|+|.+.|++++.++|+|+||||+++||+++||+.+|||+||+|.|+++.+++|||.|||||++.+|.|.+..
T Consensus 240 DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~d~~ 319 (646)
T KOG2310|consen 240 DLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLADHP 319 (646)
T ss_pred hheeeccccccccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceecceeeeeeEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C----CCCCCHhHHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEEEEeec-ccccChhhhhhHHhhccCCccceEEE
Q 004713 327 D----IDPDDQNSILEHLDKVVRNLIERSSKKTVNR-SELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVANPQDILIF 400 (734)
Q Consensus 327 ~----~~~~~~~~i~~~l~~~Ve~li~~a~~~~~~~-~~~~~PLiRLrVd~sg-~~~~n~~rfgq~f~gkVANp~dil~f 400 (734)
+ +.|.....+.+++.++|++||+.|..++..+ .++++|||||||+|+| |+++||+||||+|+|+||||+|||+|
T Consensus 320 ~~~~~i~p~~~~~i~~~~~e~veemI~~A~~q~~~~~~~p~lPLIRLrVdYsg~~~~~n~~RFs~rfvgrVAN~~Dvv~f 399 (646)
T KOG2310|consen 320 DILNPIRPKVTDGILSFLIEKVEEMIETAEAQRLGRSGQPELPLIRLRVDYSGDFEPFNPQRFSQRFVGRVANPQDVVQF 399 (646)
T ss_pred ccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEecCCccccCHHHHhHhhhhcccChhheEEE
Confidence 8 7888888899999999999999998766544 3699999999999998 99999999999999999999999999
Q ss_pred EEcccccccccccccccccCccccchhhHHHHHHhh----cccccccCCCcHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 004713 401 SKSSKKSKAEAKIDDFERLRPEELNQQNIEALVAEN----NLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQETR 476 (734)
Q Consensus 401 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~v~e~----~~~l~~l~~~~l~~av~~fv~k~d~~ai~~~v~~~~~~~~ 476 (734)
+|++++.+++....+.+.++++++++++|+.||.++ +.+|++|++.+|++||++||+|||++||++||+++|++++
T Consensus 400 ~k~~kk~rte~~~~~t~~~~~~e~~~~~ve~Lvn~y~~~~n~ql~lL~~~gl~eal~~fv~kdek~A~~~~V~~~iek~~ 479 (646)
T KOG2310|consen 400 SKKRKKTRTEEVNNGTEALRPEEGNQLRVETLVNQYTAESNVQLSLLPERGLGEALQEFVDKDEKDAFEECVKYQIEKVQ 479 (646)
T ss_pred eecccccccccccccchhccccccchhhHHHHHhhhhhccccceeeeccccHHHHHHHHhhhhhHHHHHHHHHHHHHhcc
Confidence 998877677666667778889999999999999554 7899999999999999999999999999999999999884
Q ss_pred HHHhhcCCccccchhhHHHHhHHhHHHHHhh--hccCCCCCCCCCcccccccccccccccCCccceeccCccccccccCC
Q 004713 477 HKIAKDSDTAKFEEEDIILKVGESLEERLKE--RSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAISFSDDEDTTQISDT 554 (734)
Q Consensus 477 ~~l~~~~~~~~~~~~d~i~~~~~~~~er~~e--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~sd~~~~~~~~~~ 554 (734)
.+.+++.+.++++++.|.|+. +..+..+++++. +.+..+.++.-+ +..+|++|.+++.|+.
T Consensus 480 ----------~~~~~~~~~~~~E~i~~~lk~~~r~~~~~~t~~~e-~~e~~e~~~~~~------~~~~s~~e~~~~~s~~ 542 (646)
T KOG2310|consen 480 ----------RFNEEDHIDKVEENIDEELKRFKRATRKRGTNPKE-DDETREALTEGS------ALRSSNEESASGFSSD 542 (646)
T ss_pred ----------ccchhhhcchHHHHHHHHHHHHHhhhccCCCCcCc-hhhhhhhhcccc------cccccccccccccCcc
Confidence 345788999999999999998 777777777743 355555544432 2688899999998888
Q ss_pred cccccCCccccccccccCCCccccCCccCcCCCCCCCCCcCCCCCCCccceecccccccccchhh
Q 004713 555 KSATRGRKWSSAASRSSRGALESDKSKTSTRGRGRGRGRGRGRGANNLKQTTLDASLGFRQSQRS 619 (734)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (734)
-+-+.++-.||.+- .++.....++|||||||++-.++++++.|+||+..++.
T Consensus 543 ~~~s~~~~~S~~~~-------------~~~~s~~pt~~rgr~r~~~~~r~~~~~ss~g~s~~~~~ 594 (646)
T KOG2310|consen 543 LLMSHEELGSSIAN-------------DSSVSAAPTKGRGRGRGRRGKRGQNSDSSLGFSRTRAD 594 (646)
T ss_pred cccccchhhhhhcc-------------ccchhcCCCcccccccccccccCCccccccchhhhccc
Confidence 88887766555441 11233344555666666688888999999999998665
No 2
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=100.00 E-value=2.5e-91 Score=768.30 Aligned_cols=386 Identities=49% Similarity=0.889 Sum_probs=356.1
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCc
Q 004713 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~ 89 (734)
+++|||||+||||||+.+.++.|++|++.+|++|+++|++++||+||++|||||.+.|+.++++++|++|++|||||+||
T Consensus 1 ~~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~ 80 (405)
T TIGR00583 1 EDTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPC 80 (405)
T ss_pred CCceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeechhhhhccc-ccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEE
Q 004713 90 QFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (734)
Q Consensus 90 ~~e~lSd~~~~F~~-~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~ 168 (734)
+||+|||++.+|.. .|..+||+|||++++||||+||||||+|.+.+.++++++|+.+|++++||+.. ..+++.+.
T Consensus 81 ~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~~~~l~lL~~~Glvnifgk~~----~~~~i~~~ 156 (405)
T TIGR00583 81 ELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGLLCALDLLHATGLVNYFGKVP----EIDNIIVS 156 (405)
T ss_pred chhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccccccccHHHHHHhCCCEEEecccc----ccccceee
Confidence 99999999999984 89999999999999999999999999999887789999999999999999853 34678899
Q ss_pred EEEEeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCccccccCCcCCCE
Q 004713 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (734)
Q Consensus 169 Pill~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~Dy 248 (734)
|+++++|.++++|||+||++++++.++|.+ .++.++.|... ..+|||||++||++.++...+++++.+++.+|||
T Consensus 157 Pvll~kg~~~valyGl~~~~d~rl~~~f~~-~~v~~~~p~~~----~~~~fnIlv~Hq~~~~~~~~~~ipe~llp~~fDY 231 (405)
T TIGR00583 157 PILLQKGETKLALYGISNVRDERLVRTFKD-NKVSFLRPNAG----AEDWFNLLVLHQNHAAHTSTSFLPESFIPDFFDL 231 (405)
T ss_pred eEEEecCCeeEEEecCCCCCHHHHHHHhhc-cchhhhccccC----CCCceEEEEeCceecCCCCcccCchhhhhccCcE
Confidence 999999999999999999999999999987 46888877632 3589999999999988877788999999999999
Q ss_pred EEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECCCCCcEEEEEEEeccCCCC
Q 004713 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEADI 328 (734)
Q Consensus 249 Va~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~~e~IpL~tvRpf~~~eI~L~~~~~~ 328 (734)
|||||+|+|++.|+..+..+++|+||||+++|||+++|..+|||+||+|+++.+++++|||+++|||++.+++|++..++
T Consensus 232 ValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l~~~~~~ 311 (405)
T TIGR00583 232 VIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILLDKVPGS 311 (405)
T ss_pred EEecccccccccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEhhhcccc
Confidence 99999999999888777667899999999999999999999999999999989999999999999999999999987655
Q ss_pred CC----CCHhHHHHHHHHHHHHHHHHhhhcccc---------cccCCCCeEEEEEEeec----ccccChhhhhhHHhhcc
Q 004713 329 DP----DDQNSILEHLDKVVRNLIERSSKKTVN---------RSELKLPLVRIKVDYSG----FMTINPQRFGQKYVGKV 391 (734)
Q Consensus 329 ~~----~~~~~i~~~l~~~Ve~li~~a~~~~~~---------~~~~~~PLiRLrVd~sg----~~~~n~~rfgq~f~gkV 391 (734)
.+ +++.+|.++|.+.|++||++|++++.. ..++++|||||||+||| |+++||+||||+|+|||
T Consensus 312 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~~~~n~~rf~~~~~~~v 391 (405)
T TIGR00583 312 RPILKTDNKKETDKRLIDEVEEMINEANAEWKAKRADGEGDEPREPPLPLIRLKVDYTGPWLNYQVENPKRFSNRFVGRV 391 (405)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCceEEEEEEecCCCCCccccChhHHhhhhcccc
Confidence 44 457889999999999999999876522 34689999999999996 89999999999999999
Q ss_pred CCccceEEEEEcc
Q 004713 392 ANPQDILIFSKSS 404 (734)
Q Consensus 392 ANp~dil~f~k~~ 404 (734)
|||+|||+|||++
T Consensus 392 an~~d~~~~~~~~ 404 (405)
T TIGR00583 392 ANANDVVQFYKNN 404 (405)
T ss_pred cChhHeEEEEecC
Confidence 9999999999754
No 3
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-34 Score=313.65 Aligned_cols=262 Identities=32% Similarity=0.453 Sum_probs=187.2
Q ss_pred eEEEEEcCCCCC-CCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004713 13 VRILVATDCHLG-YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 13 mRILh~SD~HLG-~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~ 91 (734)
|||||+|||||| +....+.|.+|.+.+|++++++|++++||||||||||||.++|+..++..+++.|+++|
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~-------- 72 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLK-------- 72 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhc--------
Confidence 899999999999 66677899999999999999999999999999999999999999999999999999986
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEE
Q 004713 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (734)
Q Consensus 92 e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pil 171 (734)
..+||||+|+||||.+.+....+++.++...+++.+.+...... ....+...|++
T Consensus 73 ------------------------~~~Ipv~~I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 127 (390)
T COG0420 73 ------------------------DAGIPVVVIAGNHDSPSRLSEASPLLLLNNLGLHGVVGRLVHEI-RPPEIVAAPWL 127 (390)
T ss_pred ------------------------cCCCcEEEecCCCCchhccccccchHHHHcCCceeecccceecc-cccchhcceee
Confidence 46899999999999999887766666677777666555300000 00111245666
Q ss_pred EeeCCeeEE-EEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCC--CC--CcCcc-c--cccCC
Q 004713 172 IRKGSTAVA-LYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVK--TN--PKNAI-N--EHFLP 243 (734)
Q Consensus 172 l~kG~t~va-LyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~--~~--~~~~I-~--e~lLp 243 (734)
+......+. +||..+............ .....+. ....++|+++|+.... .. +...+ + -+.+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (390)
T COG0420 128 IPGPDPDVVFFLGLNGLEKEQFELLLHK-GLLSALD--------PDDDPSILVLHQSIDALTSGAERDLALGTVDLSLLP 198 (390)
T ss_pred eccCCCcceeeeccCCchHHHHHHHHhH-hHHhhcC--------CccCceeeehhhhhcccccCCccceEEccccccccc
Confidence 665455555 888887765544332200 0011111 1157999999997441 11 11111 1 25667
Q ss_pred cC-CCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCc-eEEEEEECCCCCcEEEEEEE
Q 004713 244 RF-LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-YRPTKIPLTSVRPFEYTEII 321 (734)
Q Consensus 244 ~~-~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~-~~~e~IpL~tvRpf~~~eI~ 321 (734)
.. |||||+||+|.++.. ......|+||||+++++|.| +...|++.+|+++++. +.++.+++ +++...++.
T Consensus 199 ~~~~~YvALGHiH~~~~~----~~~~~~i~y~GS~~~~~f~E-~~~~k~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~ 270 (390)
T COG0420 199 KGGFDYVALGHIHKRQVI----PKEDPPIVYPGSPERYSFGE-EGERKGVVLVEFSGGKLWRFEELFV---PLFERLEVD 270 (390)
T ss_pred CCCcceEEcCCccccccc----CCCCCceecCCCceecchhH-cCCcccEEEEEecCCceeeeccccc---cccCceEEE
Confidence 76 999999999998664 33234688999999999986 4678999999999874 45555544 445544554
Q ss_pred ecc
Q 004713 322 LKD 324 (734)
Q Consensus 322 L~~ 324 (734)
...
T Consensus 271 ~~~ 273 (390)
T COG0420 271 VLN 273 (390)
T ss_pred Eee
Confidence 444
No 4
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=100.00 E-value=3.8e-32 Score=300.78 Aligned_cols=316 Identities=20% Similarity=0.268 Sum_probs=206.2
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
|||||+||||||....+..+..+....++++++++.+++||+||++|||||...|+........++|.++.
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~--------- 71 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQ--------- 71 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHH---------
Confidence 89999999999987665556666666789999999999999999999999998887654322333444331
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEEE
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILI 172 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pill 172 (734)
..++|||+|+||||.+.... ...++|...| |.+++... ......|+.+
T Consensus 72 -----------------------~~~~~v~~I~GNHD~~~~l~--~~~~~l~~~g-i~vl~~~~------~~~~~~~v~l 119 (407)
T PRK10966 72 -----------------------QTGCQLVVLAGNHDSVATLN--ESRDLLAFLN-TTVIASAS------DDLGHQVIIL 119 (407)
T ss_pred -----------------------hcCCcEEEEcCCCCChhhhh--hHHHHHHHCC-cEEEeccc------ccCCcceEEE
Confidence 34689999999999876533 2346777666 45555421 1223356666
Q ss_pred ee--CCeeEEEEecCCCChHHHHhhhcCh----------hhHhh-ccc---hhhhh--ccCCCceEEEEEccCCCCCC--
Q 004713 173 RK--GSTAVALYGLGNIRDERLNRMFQTP----------HAVQW-MRP---EAQEE--CQVSDWFNILVLHQNRVKTN-- 232 (734)
Q Consensus 173 ~k--G~t~vaLyGL~~i~derL~~~f~~~----------~~v~~-l~p---~~~~~--~~~~~~fnILvlHqn~~~~~-- 232 (734)
.. |...+.+|++||.+...+...|... ..+.. +.. ..... .-.++..||++.|+.+.+..
T Consensus 120 ~~~~g~~~~~i~~lPy~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I~~aH~~v~g~~~~ 199 (407)
T PRK10966 120 PRRDGTPGAVLCAIPFLRPRDVITSQAGQSGIEKQQALQAAIADHYQQLYQLACELRDELGQPLPIIATGHLTTVGASKS 199 (407)
T ss_pred ecCCCCeeeEEEECCCCCHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeEEEcCCccc
Confidence 53 3345679999999877665443100 00100 000 00000 00135689999998876532
Q ss_pred ---------CcCccccccCCcCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCC-ce
Q 004713 233 ---------PKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN-QY 302 (734)
Q Consensus 233 ---------~~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~-~~ 302 (734)
+...++.+.++. |||||+||+|++|. +.+ ...|+|||||+++||+|. ...|+|++|+++.+ .+
T Consensus 200 ~sEr~~~vGg~~~v~~~~f~~-~dYvALGHlH~~Q~----v~~-~~~vrYsGSpl~~sFsE~-~~~K~v~lVel~~~~~~ 272 (407)
T PRK10966 200 DSVRDIYIGTLDAFPAQAFPP-ADYIALGHIHRAQK----VGG-TEHIRYSGSPIPLSFDEL-GKSKSVHLVEFDQGKLQ 272 (407)
T ss_pred CCeeEeeecCCceecHHHCCc-cCeeeccccccCcC----CCC-CCcEEEcCCCCCCCcccc-CCCCeEEEEEEcCCccc
Confidence 123355667775 79999999999754 432 357999999999999973 45799999999765 47
Q ss_pred EEEEEECCCCCcEEEEEEEeccCCCCCCCCHhHHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEEEEeecccccChhh
Q 004713 303 RPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPLVRIKVDYSGFMTINPQR 382 (734)
Q Consensus 303 ~~e~IpL~tvRpf~~~eI~L~~~~~~~~~~~~~i~~~l~~~Ve~li~~a~~~~~~~~~~~~PLiRLrVd~sg~~~~n~~r 382 (734)
.+++|||...||+...+. +.+++.+ .+..+-. . .....++|+++|....... +
T Consensus 273 ~v~~i~l~~~~~l~~~~g-----------~~~el~~----~~~~l~~---~-----~~~~~~y~~v~l~d~~~~~-~--- 325 (407)
T PRK10966 273 SVTPLPVPVFQPMAVLKG-----------DLASITA----QLEQWRD---V-----SQEPPVWLDIEVTTDDYLH-D--- 325 (407)
T ss_pred eEEEEECCCCceeEEecC-----------CHHHHHH----HHHHhhh---c-----cCCCCcEEEEEEeCCCCCh-h---
Confidence 999999999998764331 1222322 1111100 0 1124688988888665332 3
Q ss_pred hhhHHhhccCC-ccceEEEEEc
Q 004713 383 FGQKYVGKVAN-PQDILIFSKS 403 (734)
Q Consensus 383 fgq~f~gkVAN-p~dil~f~k~ 403 (734)
.-+++.....| |+.||.+.+.
T Consensus 326 ~~~~l~~~~~~~p~~il~i~~~ 347 (407)
T PRK10966 326 IQRRIQALTESLPVEVLLVRRS 347 (407)
T ss_pred HHHHHHHHcCCCCeEEEEEEec
Confidence 33566666677 7778888643
No 5
>PF04152 Mre11_DNA_bind: Mre11 DNA-binding presumed domain ; InterPro: IPR007281 The Mre11 complex is a multi-subunit nuclease that is composed of Mre11, Rad50 and Nbs1/Xrs2, and is involved in checkpoint signalling and DNA replication []. Mre11 has an intrinsic DNA-binding activity that is stimulated by Rad50 on its own or in combination with Nbs1 [].; GO: 0004519 endonuclease activity, 0030145 manganese ion binding, 0006302 double-strand break repair, 0005634 nucleus; PDB: 4FBW_B 4FBK_A 4FCX_B 4FBQ_B 3T1I_B.
Probab=99.98 E-value=7.4e-33 Score=274.36 Aligned_cols=154 Identities=44% Similarity=0.777 Sum_probs=79.8
Q ss_pred eEEEEEECCCCCcEEEEEEEeccCC-CCCCCCHhHHHHHHHHHHHHHHHHhhhcc-----------cccccCCCCeEEEE
Q 004713 302 YRPTKIPLTSVRPFEYTEIILKDEA-DIDPDDQNSILEHLDKVVRNLIERSSKKT-----------VNRSELKLPLVRIK 369 (734)
Q Consensus 302 ~~~e~IpL~tvRpf~~~eI~L~~~~-~~~~~~~~~i~~~l~~~Ve~li~~a~~~~-----------~~~~~~~~PLiRLr 369 (734)
|++++|||+|||||++.+|+|++.. ..++.+.++|.++|.+.|++||++|+.++ ....++++||||||
T Consensus 1 f~~~pIpLkTVRPFv~~~i~L~~~~~~~~~~~~~~v~~~l~~~Ve~mI~~A~~~~~~~~~~~~~~~~~~~~~~lPLIRLR 80 (175)
T PF04152_consen 1 FRLEPIPLKTVRPFVFDDIVLSDEPLPLDPDNKEDVEKFLREKVEEMIEEAKEEWEELQREPDDQTGHPKQPPLPLIRLR 80 (175)
T ss_dssp EEEEEEE-SSS--EEEEEEEGGG-TSSSSTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHHT--STTTSSS-SS-EEEEE
T ss_pred CCcccccCCCCCCEEEEEEEeCCcCCCCCcchHHHHHHHHHHHHHHHHHHhHhhhccccccccccccCcccCCCCEEEEE
Confidence 6899999999999999999999986 45677789999999999999999999876 23467899999999
Q ss_pred EEeec-ccccChhhhhhHHhhccCCccceEEEEEccccccc------ccccccccccCccccchhhHHHHHHhh--cccc
Q 004713 370 VDYSG-FMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKA------EAKIDDFERLRPEELNQQNIEALVAEN--NLKM 440 (734)
Q Consensus 370 Vd~sg-~~~~n~~rfgq~f~gkVANp~dil~f~k~~~~~~~------~~~~~~~~~~~~~~l~~~~i~~~v~e~--~~~l 440 (734)
|+||| |+++||+||||+|+||||||+|||+|||+++++.. .....+.....++.+++.+|++||.++ ..+|
T Consensus 81 Vdys~~~~~~N~~RFgq~FvgrVANP~Dil~f~rkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~lV~~~l~~~~L 160 (175)
T PF04152_consen 81 VDYSGGFEVFNPQRFGQRFVGRVANPNDILQFYRKKKKKKKKKKKKDEDDPDEEEPLAPEELDQVRVEDLVKEYLSAQKL 160 (175)
T ss_dssp EE-TTT-----CHHHHHCCTTTBS-SSSSEEEE-----------------------------------------------
T ss_pred EEecCCCcccCHHHHHHHhccccCChHHeEEEEecccccccccccccccccchhhhccccccccccHHHHHHHHHhhCCc
Confidence 99999 99999999999999999999999999987654432 112223344566788899999999995 6789
Q ss_pred cccCCCcHHHHHHHH
Q 004713 441 EIIPVNDLDVALHNF 455 (734)
Q Consensus 441 ~~l~~~~l~~av~~f 455 (734)
+||++++|++||++|
T Consensus 161 ~lL~e~~l~eAv~~F 175 (175)
T PF04152_consen 161 SLLPENGLNEAVEEF 175 (175)
T ss_dssp ---------------
T ss_pred cccCHHHHHHHHHhC
Confidence 999999999999998
No 6
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.98 E-value=3.8e-30 Score=278.77 Aligned_cols=232 Identities=15% Similarity=0.166 Sum_probs=163.6
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC-CChhHHHHHHH-HHHHhccCCCCcc
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK-PSRSTLVKAIE-ILRRHCLNDRPVQ 90 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~k-Ps~~tl~~~~~-lLr~l~~gd~p~~ 90 (734)
|||||+||||||....++.+.++...+|++++++|++++||+||++||+||... |+..++..+.+ +++++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L-------- 72 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLL-------- 72 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHH--------
Confidence 899999999999876666677778899999999999999999999999999974 44444433333 33332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCC--CcchHHHHhhhCCceeeccceeecCCCccceeEE
Q 004713 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV--DNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (734)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~--~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~ 168 (734)
.+.++|||+|+||||..... ...++..+|...+++.+++.. .
T Consensus 73 ------------------------~~~gi~v~~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~------------~ 116 (340)
T PHA02546 73 ------------------------KEAGITLHVLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEP------------T 116 (340)
T ss_pred ------------------------HHCCCeEEEEccCCCcccccccccCchHHHHhhCCCEEEeCCc------------e
Confidence 14589999999999975321 112345677776777766542 1
Q ss_pred EEEEeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCC----C--CcCccccccC
Q 004713 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT----N--PKNAINEHFL 242 (734)
Q Consensus 169 Pill~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~----~--~~~~I~e~lL 242 (734)
++.+ + .+.+++++|...+.+..++ .++. ....+|++.|+.+.+. + ....+...++
T Consensus 117 ~v~i--~--g~~i~~lP~~~~~~~~~~~------~~l~---------~~~~~ill~H~~v~g~~~~~g~~~~~~~~~~~~ 177 (340)
T PHA02546 117 TVDF--D--GCSIDLIPWICKENTEEIL------EFIK---------NSKSEYCVGHWELNGFYFYKGMKSDHGLDPDFL 177 (340)
T ss_pred EEEE--C--CEEEEECCCCCHHHHHHHH------HHhc---------cCCCcEEEEeeEEecCcccCCCccccCCChhHh
Confidence 2222 2 3567889998765554322 2222 2457999999865442 1 1123334445
Q ss_pred CcCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECCCCCcEEEEEE
Q 004713 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEI 320 (734)
Q Consensus 243 p~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~~e~IpL~tvRpf~~~eI 320 (734)
..|||||+||+|.++. . ..++||||+++++|+| +..+|||++|++..++ ++++|+. .|+|..+..
T Consensus 178 -~~fdyvALGHiH~~~~----~----~~i~Y~GSp~~~sf~E-~~~~KG~~~vd~~~~~--~efip~~-~~~~~~i~~ 242 (340)
T PHA02546 178 -KKYKQVWSGHFHTISE----K----GNVTYIGTPYTLTAGD-ENDPRGFWVFDTETHK--LEFIANP-TTWHRRITY 242 (340)
T ss_pred -ccCCEEeecccccCcc----c----CCEEEeCCceeeCccc-cCCCCeEEEEECCCCc--eEEEeCC-CceEEEEEe
Confidence 4699999999999632 2 2599999999999986 3568999999987654 7899986 588986554
No 7
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=9.5e-28 Score=250.28 Aligned_cols=228 Identities=21% Similarity=0.233 Sum_probs=146.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
|||||+||||||.......|..+.+.+|+++++.+++++||+||++||+||...|+..+...+.+.|.++.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~--------- 71 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLS--------- 71 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHH---------
Confidence 89999999999987766667778889999999999999999999999999999998766555556666542
Q ss_pred eechhhhhcccccCccccCCCCCCCC-CcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEE
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVG-LPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~-IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pil 171 (734)
..+ +|||+|+||||.+..... +..++.. ..|++++... ....++.
T Consensus 72 -----------------------~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~-~~v~i~~~~~--------~~~~~~~ 117 (253)
T TIGR00619 72 -----------------------DANPIPIVVISGNHDSAQRLSA--AKKLLIE-LGVFVVGFPV--------GDPQILL 117 (253)
T ss_pred -----------------------hcCCceEEEEccCCCChhhccc--chhHHHh-CCeEEEEecc--------cCceEEE
Confidence 234 999999999999765432 2234444 4466666532 1123555
Q ss_pred EeeC--CeeEEEEecCCCChHHHHhhhcChh-----------hHhhccchhhhhccCCCceEEEEEccCCCCCC------
Q 004713 172 IRKG--STAVALYGLGNIRDERLNRMFQTPH-----------AVQWMRPEAQEECQVSDWFNILVLHQNRVKTN------ 232 (734)
Q Consensus 172 l~kG--~t~vaLyGL~~i~derL~~~f~~~~-----------~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~------ 232 (734)
+..+ +..+++....+..+.++.+.+.+.. .+..+....... ..++.+||+++|+.+.+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Il~~H~~v~g~~~~~se~ 196 (253)
T TIGR00619 118 LKDTANGELLIVGLPLLPREALLTRAGLDGFGLELLLLHLDVKLRQALEGLIRR-LDPDLPKILLAHLFTAGATKSATER 196 (253)
T ss_pred eccCCCCceEEEEeccCCHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHh-cCCCCCEEEEEcceeccCCCcCceE
Confidence 5532 2233333333333333222111100 011000000000 1246789999999986542
Q ss_pred -----CcCccccccCCcCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcE
Q 004713 233 -----PKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKH 291 (734)
Q Consensus 233 -----~~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kg 291 (734)
+...++...++. +||||+||+|.++. ..+ ...++||||+.++||+|. ...|+
T Consensus 197 ~~~~g~~~~v~~~~~~~-~dYvALGHiH~~q~----~~~-~~~i~YsGSp~~~sf~E~-~~~K~ 253 (253)
T TIGR00619 197 RIYIGFTYAVPLINFPE-ADYVALGHHHIHKI----SKG-RERVRYSGSPFPLSFDEA-GEDKG 253 (253)
T ss_pred EeeECCccccCHHHCCc-cchhhccccccccc----cCC-CCCEEECCCCccCCcCcc-cCCCC
Confidence 122344556666 69999999999754 222 457999999999999862 34453
No 8
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.94 E-value=4.1e-26 Score=228.61 Aligned_cols=215 Identities=42% Similarity=0.624 Sum_probs=149.3
Q ss_pred EEEEEcCCCCCCCCCch---hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcc
Q 004713 14 RILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~---~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~ 90 (734)
||+|+||+|||...... .|..+.+.+|+++++.+.+.+||+||++||+|+...++...+..+.+.|.++.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~------- 73 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLK------- 73 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH-------
Confidence 79999999999865433 35788999999999999999999999999999998888777777777777652
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEE
Q 004713 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (734)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pi 170 (734)
..++|||+|+||||.+........ .+. ...+.+++. ..+...+.
T Consensus 74 -------------------------~~~~~v~~~~GNHD~~~~~~~~~~--~~~-~~~~~~~~~--------~~~~~~~~ 117 (223)
T cd00840 74 -------------------------EAGIPVFIIAGNHDSPSRLGALSP--LLA-LSGLHLVGV--------EEDVLTPL 117 (223)
T ss_pred -------------------------HCCCCEEEecCCCCCccccccccc--hHh-hCcEEEEcc--------cCcceeEE
Confidence 247999999999999876543221 111 112222210 01122344
Q ss_pred EEeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCc-----cccccCCcC
Q 004713 171 LIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA-----INEHFLPRF 245 (734)
Q Consensus 171 ll~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~-----I~e~lLp~~ 245 (734)
.+..+...+.|||+++.........+.. ....... ...+.++|+++|+++.+..+... ....+...+
T Consensus 118 ~~~~~~~~v~i~g~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T cd00840 118 LLPKGGTGVAIYGLPYLRRSRLRDLLAD--AELRPRP------LDPDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAG 189 (223)
T ss_pred EeccCCeEEEEEECCCCCHHHHHHHHHH--HHHHhhc------cCCCCcEEEEEeeeeecCCCCcccccccCcHhhcCcC
Confidence 4556678899999999876554332210 0001101 13577999999999876543322 223456778
Q ss_pred CCEEEeCcccccccCCeecCCCCceEecCCCCcccccc
Q 004713 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLI 283 (734)
Q Consensus 246 ~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~ 283 (734)
+|||++||+|.+++. ...+.+++||||+++++|+
T Consensus 190 ~d~v~~GH~H~~~~~----~~~~~~~~ypGS~~~~~f~ 223 (223)
T cd00840 190 FDYVALGHIHRPQII----LGGGPPIVYPGSPEGLSFS 223 (223)
T ss_pred CCEEECCCcccCeee----cCCCceEEeCCCccccCCC
Confidence 999999999998763 1224789999999999873
No 9
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.78 E-value=6.1e-18 Score=170.61 Aligned_cols=169 Identities=24% Similarity=0.301 Sum_probs=112.8
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004713 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~ 91 (734)
.|||+|+||+|++.... ...|+++++.+.+++||+||++||+|+...+.. ..+.++|+++
T Consensus 1 ~~~i~~~sDlH~~~~~~--------~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~l--------- 60 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS--------RERLERLVEKINALKPDLVVLTGDLVDGSVDVL---ELLLELLKKL--------- 60 (223)
T ss_pred CCEEEEEeecCCCccCC--------HHHHHHHHHHHhccCCCEEEEcCcccCCcchhh---HHHHHHHhcc---------
Confidence 48999999999997542 246889999999999999999999999876543 2344555432
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEE
Q 004713 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (734)
Q Consensus 92 e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pil 171 (734)
...+|||+++||||...+... .....+...|...+.. ..+.
T Consensus 61 ------------------------~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~~L~~--------------~~~~ 101 (223)
T cd07385 61 ------------------------KAPLGVYAVLGNHDYYSGDEE-NWIEALESAGITVLRN--------------ESVE 101 (223)
T ss_pred ------------------------CCCCCEEEECCCcccccCchH-HHHHHHHHcCCEEeec--------------CcEE
Confidence 346899999999998765331 1145666655432221 1244
Q ss_pred EeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCccccccCCcCCCEEEe
Q 004713 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVW 251 (734)
Q Consensus 172 l~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~DyVa~ 251 (734)
+..++..+.++|+++..... .. ....+ +. ..++.++|++.|++... +.+...++||+++
T Consensus 102 ~~~~~~~i~i~G~~~~~~~~-----~~--~~~~~-~~-----~~~~~~~I~l~H~P~~~--------~~~~~~~~dl~l~ 160 (223)
T cd07385 102 ISVGGATIGIAGVDDGLGRR-----PD--LEKAL-KG-----LDEDDPNILLAHQPDTA--------EEAAAWGVDLQLS 160 (223)
T ss_pred eccCCeEEEEEeccCccccC-----CC--HHHHH-hC-----CCCCCCEEEEecCCChh--------HHhcccCccEEEe
Confidence 56677889999976542210 00 00111 11 13567999999985321 2234568999999
Q ss_pred CcccccccC
Q 004713 252 GHEHECLID 260 (734)
Q Consensus 252 GH~H~~~i~ 260 (734)
||+|.+|+.
T Consensus 161 GHtHggqi~ 169 (223)
T cd07385 161 GHTHGGQIR 169 (223)
T ss_pred ccCCCCEEe
Confidence 999999875
No 10
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.69 E-value=4.3e-16 Score=164.17 Aligned_cols=171 Identities=19% Similarity=0.301 Sum_probs=110.1
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCC
Q 004713 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (734)
Q Consensus 9 ~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p 88 (734)
....|||+|+||+|++.... ...++++++.+++.+||+|+++||+++...+. ....+.+.|+++.
T Consensus 46 ~~~~~rI~~lSDlH~~~~~~--------~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~--~~~~~~~~L~~L~----- 110 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFVP--------LSLISDAIALGIEQKPDLILLGGDYVLFDMPL--NFSAFSDVLSPLA----- 110 (271)
T ss_pred CCCCcEEEEEcccCCCCcCC--------HHHHHHHHHHHHhcCCCEEEEccCcCCCCccc--cHHHHHHHHHHHh-----
Confidence 34569999999999985321 34678899999999999999999999843222 1224455666542
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcch-HHHHhhhCCceeeccceeecCCCccceeE
Q 004713 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLS-AVDILSACNLVNYFGKMVLGGSGVGEITV 167 (734)
Q Consensus 89 ~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~ls-aldiL~~~glVn~FGk~~l~~~~~~~i~v 167 (734)
...|||+|.||||...+..... ..+.|...|. .++..
T Consensus 111 ----------------------------~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi-~lL~n------------- 148 (271)
T PRK11340 111 ----------------------------ECAPTFACFGNHDRPVGTEKNHLIGETLKSAGI-TVLFN------------- 148 (271)
T ss_pred ----------------------------hcCCEEEecCCCCcccCccchHHHHHHHHhcCc-EEeeC-------------
Confidence 2479999999999865432211 2345665553 33321
Q ss_pred EEEEEeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCccccccCCcCCC
Q 004713 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLD 247 (734)
Q Consensus 168 ~Pill~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~D 247 (734)
+.+.+..++..+.|+|++.....+ . . ....+ .++.|+|++.|++.. + +.+....+|
T Consensus 149 ~~~~i~~~~~~i~i~G~~d~~~~~----~-~--~~~~~---------~~~~~~IlL~H~P~~-------~-~~~~~~~~d 204 (271)
T PRK11340 149 QATVIATPNRQFELVGTGDLWAGQ----C-K--PPPAS---------EANLPRLVLAHNPDS-------K-EVMRDEPWD 204 (271)
T ss_pred CeEEEeeCCcEEEEEEecchhccC----C-C--hhHhc---------CCCCCeEEEEcCCCh-------h-HhhccCCCC
Confidence 233445566789999997532110 0 0 00001 136799999998742 1 223345799
Q ss_pred EEEeCcccccccC
Q 004713 248 FVVWGHEHECLID 260 (734)
Q Consensus 248 yVa~GH~H~~~i~ 260 (734)
|+++||+|++|+.
T Consensus 205 L~lsGHTHGGQi~ 217 (271)
T PRK11340 205 LMLCGHTHGGQLR 217 (271)
T ss_pred EEEeccccCCeEE
Confidence 9999999999874
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.59 E-value=2.8e-14 Score=150.20 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=64.2
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCC
Q 004713 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (734)
Q Consensus 9 ~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd 86 (734)
..+.|||+|+||+||.........+.+....|+.+++.+++. +||+||++|||.+... ......+++.|.+
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~----- 83 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAP----- 83 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhh-----
Confidence 447799999999999543333334567788999999988765 6999999999999653 3444444444433
Q ss_pred CCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 87 ~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
..+|+|+|+||||..
T Consensus 84 ------------------------------l~~Pv~~v~GNHD~~ 98 (275)
T PRK11148 84 ------------------------------LRKPCVWLPGNHDFQ 98 (275)
T ss_pred ------------------------------cCCcEEEeCCCCCCh
Confidence 358999999999974
No 12
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.55 E-value=4.1e-15 Score=140.87 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=49.3
Q ss_pred ceEEEEEccCCCCCC-CcCccccccCCcCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEE
Q 004713 218 WFNILVLHQNRVKTN-PKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLE 296 (734)
Q Consensus 218 ~fnILvlHqn~~~~~-~~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVe 296 (734)
..+|+++|....... ....+...+....+++|+.||+|..+.. .. .+..+++|||....... .+++|++++
T Consensus 81 ~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~--~~--~~~~~~~~Gs~~~~~~~----~~~~~~i~~ 152 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVF--KI--GGIHVINPGSIGGPRHG----DQSGYAILD 152 (156)
T ss_dssp TEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEE--EE--TTEEEEEE-GSSS-SSS----SSEEEEEEE
T ss_pred CCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEE--EE--CCEEEEECCcCCCCCCC----CCCEEEEEE
Confidence 467888887654321 1111223344567999999999998653 22 24789999998776643 289999999
Q ss_pred EeCC
Q 004713 297 IKEN 300 (734)
Q Consensus 297 I~~~ 300 (734)
++++
T Consensus 153 ~~~~ 156 (156)
T PF12850_consen 153 IEDK 156 (156)
T ss_dssp ETTT
T ss_pred EecC
Confidence 8753
No 13
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.55 E-value=2.1e-14 Score=146.43 Aligned_cols=198 Identities=19% Similarity=0.273 Sum_probs=110.5
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~ 91 (734)
||+|+||+|+|.......+..+...+|+.+++.+++. +||+||++|||++...+ .....+.+.|++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~---------- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAA---------- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhh----------
Confidence 7999999999964321223456678899999999988 99999999999987643 233334444432
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEE
Q 004713 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (734)
Q Consensus 92 e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pil 171 (734)
.++|+++|+||||..... ...+..... ..+. .. ..
T Consensus 69 -------------------------~~~p~~~v~GNHD~~~~~-----~~~~~~~~~--~~~~--------~~-----~~ 103 (240)
T cd07402 69 -------------------------LPIPVYLLPGNHDDRAAM-----RAVFPELPP--APGF--------VQ-----YV 103 (240)
T ss_pred -------------------------cCCCEEEeCCCCCCHHHH-----HHhhccccc--cccc--------cc-----ee
Confidence 368999999999974211 112211110 0000 00 11
Q ss_pred EeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCC---cC-cc--c---cccC
Q 004713 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP---KN-AI--N---EHFL 242 (734)
Q Consensus 172 l~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~---~~-~I--~---e~lL 242 (734)
+..+ .+.++++...........+. ...+.|+...... ..+...|+++|++...... .. .. . ..++
T Consensus 104 ~~~~--~~~~i~lds~~~~~~~~~~~-~~ql~wL~~~L~~---~~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l 177 (240)
T cd07402 104 VDLG--GWRLILLDSSVPGQHGGELC-AAQLDWLEAALAE---APDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVL 177 (240)
T ss_pred EecC--CEEEEEEeCCCCCCcCCEEC-HHHHHHHHHHHHh---CCCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHH
Confidence 2222 35555554432110000011 1234555433221 2356889999998654321 00 00 0 1233
Q ss_pred C-c-CCCEEEeCcccccccCCeecCCCCceEecCCCCc
Q 004713 243 P-R-FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (734)
Q Consensus 243 p-~-~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v 278 (734)
. . .+++|++||.|..... ... +..+++.||.-
T Consensus 178 ~~~~~v~~v~~GH~H~~~~~--~~~--g~~~~~~gs~~ 211 (240)
T cd07402 178 ARHPNVRAILCGHVHRPIDG--SWG--GIPLLTAPSTC 211 (240)
T ss_pred hcCCCeeEEEECCcCchHHe--EEC--CEEEEEcCcce
Confidence 3 2 6899999999997543 332 45666777653
No 14
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.54 E-value=4.5e-14 Score=133.51 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=57.7
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeee
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~l 94 (734)
|||+||+|+|.......... ...|+++++.+.+.++|+|+++||||+...+ .....+.++|.+++
T Consensus 1 il~isD~Hl~~~~~~~~~~~--~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~l~----------- 65 (144)
T cd07400 1 ILHLSDLHFGPERKPELLAL--LSLLDRLLAEIKALDPDLVVITGDLTQRGLP--EEFEEAREFLDALP----------- 65 (144)
T ss_pred CeEeCccCCCCCcchhHHHH--HHHHHHHHHHHhccCCCEEEECCCCCCCCCH--HHHHHHHHHHHHcc-----------
Confidence 79999999997543322111 1227788999999999999999999997643 34445556666542
Q ss_pred chhhhhcccccCccccCCCCCCCCCcEEEEcCCCCC
Q 004713 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (734)
Q Consensus 95 Sd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~ 130 (734)
...+|+++|+||||.
T Consensus 66 ---------------------~~~~~~~~v~GNHD~ 80 (144)
T cd07400 66 ---------------------APLEPVLVVPGNHDV 80 (144)
T ss_pred ---------------------ccCCcEEEeCCCCeE
Confidence 112799999999997
No 15
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.52 E-value=8.6e-13 Score=137.43 Aligned_cols=227 Identities=15% Similarity=0.195 Sum_probs=126.2
Q ss_pred CCceEEEEEcCCCCCCCCCc----hhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChh---HHHHHHHHHH
Q 004713 10 ANTVRILVATDCHLGYMEKD----EIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRS---TLVKAIEILR 80 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d----~~R~~Ds~~aFeeIl~~A~e~--~VD~VLiaGDLFd~~kPs~~---tl~~~~~lLr 80 (734)
.+.++|+|+||.|+|..... ..+..+....|+.+++.+.+. ++|+||++|||++....... ....+.++++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 46799999999999964332 122234456789999998888 99999999999998754321 1111222222
Q ss_pred HhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCC
Q 004713 81 RHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGS 160 (734)
Q Consensus 81 ~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~ 160 (734)
+ + ..++||++|+||||..... ....+..+. ..||...
T Consensus 82 ~--------------------------~-------~~~vp~~~i~GNHD~~~~~-~~~~~~~f~-----~~~g~~~---- 118 (262)
T cd07395 82 L--------------------------L-------DPDIPLVCVCGNHDVGNTP-TEESIKDYR-----DVFGDDY---- 118 (262)
T ss_pred h--------------------------c-------cCCCcEEEeCCCCCCCCCC-ChhHHHHHH-----HHhCCcc----
Confidence 1 1 3479999999999974221 111122221 1233210
Q ss_pred CccceeEEEEEEeeCCeeEEEEec-----------CCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCC
Q 004713 161 GVGEITVYPILIRKGSTAVALYGL-----------GNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (734)
Q Consensus 161 ~~~~i~v~Pill~kG~t~vaLyGL-----------~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~ 229 (734)
..+..++ +.+++| +++.. ..+.|+...............|++.|.+..
T Consensus 119 ---------y~~~~~~--~~~i~lds~~~~~~~~~~~~~~----------~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~ 177 (262)
T cd07395 119 ---------FSFWVGG--VFFIVLNSQLFFDPSEVPELAQ----------AQDVWLEEQLEIAKESDCKHVIVFQHIPWF 177 (262)
T ss_pred ---------eEEEECC--EEEEEeccccccCccccccchH----------HHHHHHHHHHHHHHhccCCcEEEEECcCCc
Confidence 0001111 112222 12221 235565443321100134578999999875
Q ss_pred CCCC---cCc--cc-------cccC-CcCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEE
Q 004713 230 KTNP---KNA--IN-------EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLE 296 (734)
Q Consensus 230 ~~~~---~~~--I~-------e~lL-p~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVe 296 (734)
...+ ..+ +. ..++ ..++++|++||.|..... ... +...+..|++. ..+. ..+.|+.+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~--~~~--g~~~~~~~~~~-~~~~---~~~~g~~~~~ 249 (262)
T cd07395 178 LEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGG--RYG--GLEMVVTSAIG-AQLG---NDKSGLRIVK 249 (262)
T ss_pred cCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCce--EEC--CEEEEEcCcee-cccC---CCCCCcEEEE
Confidence 3221 111 11 1122 357999999999987542 222 34444455443 3343 3478899999
Q ss_pred EeCCceEEEEEE
Q 004713 297 IKENQYRPTKIP 308 (734)
Q Consensus 297 I~~~~~~~e~Ip 308 (734)
|.+++++.+...
T Consensus 250 v~~~~~~~~~~~ 261 (262)
T cd07395 250 VTEDKIVHEYYS 261 (262)
T ss_pred ECCCceeeeeee
Confidence 998888777654
No 16
>PRK09453 phosphodiesterase; Provisional
Probab=99.49 E-value=9.9e-13 Score=130.35 Aligned_cols=172 Identities=22% Similarity=0.294 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC----ChhHHHHHHHHHHHhccCCCC
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP----SRSTLVKAIEILRRHCLNDRP 88 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kP----s~~tl~~~~~lLr~l~~gd~p 88 (734)
|||+++||+|.. +.+|+++++.+.+.++|.|+++||+|+.... .......+++.|++
T Consensus 1 mri~viSD~Hg~------------~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~------- 61 (182)
T PRK09453 1 MKLMFASDTHGS------------LPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNA------- 61 (182)
T ss_pred CeEEEEEeccCC------------HHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHh-------
Confidence 799999999954 3468899999989999999999999985421 11112234444443
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEE
Q 004713 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (734)
Q Consensus 89 ~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~ 168 (734)
.+.++++|+||||.... ..+ .+ +
T Consensus 62 ----------------------------~~~~v~~V~GNhD~~~~-------~~~--~~----~---------------- 84 (182)
T PRK09453 62 ----------------------------YADKIIAVRGNCDSEVD-------QML--LH----F---------------- 84 (182)
T ss_pred ----------------------------cCCceEEEccCCcchhh-------hhc--cC----C----------------
Confidence 25789999999996321 000 00 0
Q ss_pred EEEEeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCccccccCCcCCCE
Q 004713 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (734)
Q Consensus 169 Pill~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~Dy 248 (734)
|. ..+ ..++. -+..+|+++|+.... +. .+ ......|+
T Consensus 85 ~~----------------~~~------------~~~~~---------l~g~~i~l~HG~~~~--~~-~~---~~~~~~d~ 121 (182)
T PRK09453 85 PI----------------MAP------------YQQVL---------LEGKRLFLTHGHLYG--PE-NL---PALHDGDV 121 (182)
T ss_pred cc----------------cCc------------eEEEE---------ECCeEEEEECCCCCC--hh-hc---ccccCCCE
Confidence 00 000 00000 134678999975321 10 01 11235899
Q ss_pred EEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECCCCCcE
Q 004713 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPF 315 (734)
Q Consensus 249 Va~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~~e~IpL~tvRpf 315 (734)
+++||+|.+... .. .+..+++|||.-... + ..+..|+++++. .++.+.|..-++.
T Consensus 122 vi~GHtH~p~~~--~~--~~~~~iNpGs~~~p~---~-~~~~s~~il~~~----~~~~~~~~~~~~~ 176 (182)
T PRK09453 122 LVYGHTHIPVAE--KQ--GGIILFNPGSVSLPK---G-GYPASYGILDDN----VLSVIDLEGGEVI 176 (182)
T ss_pred EEECCCCCCcce--EE--CCEEEEECCCccccC---C-CCCCeEEEEECC----cEEEEECCCCeEE
Confidence 999999997653 22 257899999975322 2 234588888873 3455566655543
No 17
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.48 E-value=7.5e-13 Score=136.60 Aligned_cols=201 Identities=17% Similarity=0.298 Sum_probs=113.2
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcc
Q 004713 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (734)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~ 90 (734)
..+||+++||+|-. +.+++.+++.+++.++|+||++|||.+... ....+..+++.|.
T Consensus 3 ~~~kIl~iSDiHgn------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~-~~~~~~~~l~~l~---------- 59 (224)
T cd07388 3 TVRYVLATSNPKGD------------LEALEKLVGLAPETGADAIVLIGNLLPKAA-KSEDYAAFFRILG---------- 59 (224)
T ss_pred ceeEEEEEEecCCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCC-CHHHHHHHHHHHH----------
Confidence 46899999999943 568899999999999999999999999752 2333333333333
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhh--------CCceeeccceeecCCCc
Q 004713 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA--------CNLVNYFGKMVLGGSGV 162 (734)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~--------~glVn~FGk~~l~~~~~ 162 (734)
..++||++|+||||.+. . ..|.. ++.+++.++.
T Consensus 60 -------------------------~l~~pv~~V~GNhD~~v-~------~~l~~~~~~~~~~p~~~~lh~~~------- 100 (224)
T cd07388 60 -------------------------EAHLPTFYVPGPQDAPL-W------EYLREAYNAELVHPEIRNVHETF------- 100 (224)
T ss_pred -------------------------hcCCceEEEcCCCChHH-H------HHHHHHhcccccCccceecCCCe-------
Confidence 23589999999999751 1 12221 2334444431
Q ss_pred cceeEEEEEEeeCCeeEEEEecCCCChHHHHhhhcChhh---Hhhccchhhhhc-cCCCceEEEEEccCCCCCC----Cc
Q 004713 163 GEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHA---VQWMRPEAQEEC-QVSDWFNILVLHQNRVKTN----PK 234 (734)
Q Consensus 163 ~~i~v~Pill~kG~t~vaLyGL~~i~derL~~~f~~~~~---v~~l~p~~~~~~-~~~~~fnILvlHqn~~~~~----~~ 234 (734)
+.+. ..+.++|+|...... . .+.+... ..|+.......+ .......||++|.+..+.+ +.
T Consensus 101 -------~~~~---g~~~~~GlGGs~~~~-~-e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h~GS 168 (224)
T cd07388 101 -------AFWR---GPYLVAGVGGEIADE-G-EPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNEQGS 168 (224)
T ss_pred -------EEec---CCeEEEEecCCcCCC-C-CcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCccCH
Confidence 1111 235667776432110 0 0000000 011100000000 0124589999999876542 11
Q ss_pred CccccccC-CcCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCc
Q 004713 235 NAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ 301 (734)
Q Consensus 235 ~~I~e~lL-p~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~ 301 (734)
..+ ..++ .....|+++||+|... ..+. +..|++||+. .+| +|+++++++..
T Consensus 169 ~al-r~~I~~~~P~l~i~GHih~~~---~~~g--~t~vvNpg~~-----~~g-----~~a~i~~~~~~ 220 (224)
T cd07388 169 HEV-AHLIKTHNPLVVLVGGKGQKH---ELLG--ASWVVVPGDL-----SEG-----RYALLDLRARK 220 (224)
T ss_pred HHH-HHHHHHhCCCEEEEcCCceeE---EEeC--CEEEECCCcc-----cCC-----cEEEEEecCcc
Confidence 111 1222 2235799999999332 2333 4689999983 222 57899987543
No 18
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.46 E-value=1e-12 Score=127.11 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=38.2
Q ss_pred cCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceE
Q 004713 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYR 303 (734)
Q Consensus 244 ~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~ 303 (734)
..+|+|++||.|..... ... +..+++|||....... .+.+|+++++.++.++
T Consensus 105 ~~~d~vi~GHtH~~~~~--~~~--~~~~iNpGs~~~~~~~----~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 105 LGVDVLIFGHTHIPVAE--ELR--GILLINPGSLTGPRNG----NTPSYAILDVDKDKVT 156 (158)
T ss_pred cCCCEEEECCCCCCccE--EEC--CEEEEECCccccccCC----CCCeEEEEEecCCeEE
Confidence 35899999999997642 232 4789999998754331 2568999999877654
No 19
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.45 E-value=1.2e-12 Score=125.58 Aligned_cols=54 Identities=28% Similarity=0.381 Sum_probs=40.0
Q ss_pred cCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceEEEE
Q 004713 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306 (734)
Q Consensus 244 ~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~~e~ 306 (734)
..+|||++||+|.+... ... +..+++|||...... ..+.+|+++++.+ .++++.
T Consensus 101 ~~~d~vi~GHtH~~~~~--~~~--~~~~inpGs~~~~~~----~~~~~~~i~~~~~-~~~~~~ 154 (155)
T cd00841 101 GGADVVLYGHTHIPVIE--KIG--GVLLLNPGSLSLPRG----GGPPTYAILEIDD-KGEVEI 154 (155)
T ss_pred cCCCEEEECcccCCccE--EEC--CEEEEeCCCccCcCC----CCCCeEEEEEecC-CCcEEE
Confidence 46899999999998653 332 578999999865432 3578999999987 555554
No 20
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.43 E-value=1.1e-13 Score=126.35 Aligned_cols=79 Identities=35% Similarity=0.534 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
|||+|+||+|+++.... . .+..+...+.+.++|+||++||+++...++.............
T Consensus 1 ~ri~~isD~H~~~~~~~-------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~----------- 61 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS-------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRL----------- 61 (200)
T ss_dssp EEEEEEEBBTTTHHHHC-------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEcCCCCCCcchh-------H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhh-----------
Confidence 89999999999965322 3 5678888889999999999999999987655433222101111
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~ 132 (734)
....+|||+|+||||...
T Consensus 62 ----------------------~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 62 ----------------------LNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp ----------------------HHTTTTEEEEE-TTSSHH
T ss_pred ----------------------hhccccccccccccccce
Confidence 135799999999999864
No 21
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.42 E-value=5.2e-12 Score=125.77 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=44.3
Q ss_pred cCCCEEEeCcccccccCCeecCCCCceEecCCCCccc-ccccCccCCcEEEEEEEeCCceEEEEEECCC
Q 004713 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVAT-SLIEGESKPKHVLLLEIKENQYRPTKIPLTS 311 (734)
Q Consensus 244 ~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~t-Sl~EgE~~~Kgv~LVeI~~~~~~~e~IpL~t 311 (734)
..+|+|++||+|.+... ... +.++++|||.-.. .-..+ .....|++++++.+.+.++.+.|.-
T Consensus 105 ~~~dvii~GHTH~p~~~--~~~--g~~viNPGSv~~~~~~~~~-~~~~syail~~~~~~~~~~~~~l~~ 168 (178)
T cd07394 105 LDVDILISGHTHKFEAF--EHE--GKFFINPGSATGAFSPLDP-NVIPSFVLMDIQGSKVVTYVYQLID 168 (178)
T ss_pred cCCCEEEECCCCcceEE--EEC--CEEEEECCCCCCCCCCCCC-CCCCeEEEEEecCCeEEEEEEEEEC
Confidence 35799999999997653 232 5799999997421 11111 2235899999988888888888753
No 22
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.40 E-value=1.1e-12 Score=127.92 Aligned_cols=176 Identities=23% Similarity=0.327 Sum_probs=94.0
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeee
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~l 94 (734)
||++||+|.++. .++. ..+.+.++|+||++|||++...+.. +..++.|+
T Consensus 1 i~~~sD~H~~~~------------~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~---~~~~~~l~-------------- 49 (188)
T cd07392 1 ILAISDIHGDVE------------KLEA--IILKAEEADAVIVAGDITNFGGKEA---AVEINLLL-------------- 49 (188)
T ss_pred CEEEEecCCCHH------------HHHH--HHhhccCCCEEEECCCccCcCCHHH---HHHHHHHH--------------
Confidence 689999999852 2333 4456789999999999998775432 12223333
Q ss_pred chhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEEEee
Q 004713 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRK 174 (734)
Q Consensus 95 Sd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pill~k 174 (734)
..++|+|+|+||||.+.... .+. .+..+.-+. .+.+
T Consensus 50 ---------------------~~~~p~~~v~GNHD~~~~~~------~~~-~~~~~~~~~--------------~~~~-- 85 (188)
T cd07392 50 ---------------------AIGVPVLAVPGNCDTPEILG------LLT-SAGLNLHGK--------------VVEV-- 85 (188)
T ss_pred ---------------------hcCCCEEEEcCCCCCHHHHH------hhh-cCcEecCCC--------------EEEE--
Confidence 24689999999999753211 111 121111111 1111
Q ss_pred CCeeEEEEecCCCChHHH--HhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCC-CCc---C-ccc----cccC-
Q 004713 175 GSTAVALYGLGNIRDERL--NRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPK---N-AIN----EHFL- 242 (734)
Q Consensus 175 G~t~vaLyGL~~i~derL--~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~-~~~---~-~I~----e~lL- 242 (734)
+ .+.++|++....... ...+.. ..+.++ ... ......+.|+++|++..+. ... . ... ..++
T Consensus 86 ~--~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~-~~l---~~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~ 158 (188)
T cd07392 86 G--GYTFVGIGGSNPTPFNTPIELSE-EEIVSD-GRL---NNLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIE 158 (188)
T ss_pred C--CEEEEEeCCCCCCCCCCccccCH-HHHHHh-hhh---hccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHH
Confidence 1 256677653210000 000111 223332 000 0124568999999987541 100 0 010 1222
Q ss_pred CcCCCEEEeCcccccccCCeecCCCCceEecCC
Q 004713 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPG 275 (734)
Q Consensus 243 p~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPG 275 (734)
....++|++||+|..... ..+. +.++++||
T Consensus 159 ~~~~~~~l~GH~H~~~~~-~~~~--~~~~~n~G 188 (188)
T cd07392 159 ERQPLLCICGHIHESRGV-DKIG--NTLVVNPG 188 (188)
T ss_pred HhCCcEEEEeccccccce-eeeC--CeEEecCC
Confidence 235789999999997532 2232 36888887
No 23
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.40 E-value=4.9e-12 Score=130.98 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC---CChhHHHHHHHHHHHhccCCCCc
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK---PSRSTLVKAIEILRRHCLNDRPV 89 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~k---Ps~~tl~~~~~lLr~l~~gd~p~ 89 (734)
|||+|+||+|+|.... ...++|.+.++ ..+.+||+|+++||+||... ........+.++|+++.
T Consensus 1 M~i~~iSDlHl~~~~~------~~~~~~~~~l~-~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~------ 67 (241)
T PRK05340 1 MPTLFISDLHLSPERP------AITAAFLRFLR-GEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALS------ 67 (241)
T ss_pred CcEEEEeecCCCCCCh------hHHHHHHHHHH-hhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHH------
Confidence 7999999999996432 22345655553 24568999999999998521 11122334455565542
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004713 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (734)
Q Consensus 90 ~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~ 132 (734)
..++|||+|+||||...
T Consensus 68 --------------------------~~g~~v~~v~GNHD~~~ 84 (241)
T PRK05340 68 --------------------------DSGVPCYFMHGNRDFLL 84 (241)
T ss_pred --------------------------HcCCeEEEEeCCCchhh
Confidence 35699999999999753
No 24
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.38 E-value=1.3e-11 Score=129.66 Aligned_cols=86 Identities=23% Similarity=0.313 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCCCCCc-hhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCCh-hHHHHHHHHHHHhccCCCCcc
Q 004713 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQ 90 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d-~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~-~tl~~~~~lLr~l~~gd~p~~ 90 (734)
+||+++||+|++..... .....++...|+.+++.+++.+||+||++|||++...+.. ..+..+.+.|.
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~---------- 70 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILD---------- 70 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHH----------
Confidence 69999999998865432 2334567889999999999999999999999998776531 22233333332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004713 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (734)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g 133 (734)
+.++|+++++||||....
T Consensus 71 -------------------------~l~~p~~~v~GNHD~~~~ 88 (267)
T cd07396 71 -------------------------RLKGPVHHVLGNHDLYNP 88 (267)
T ss_pred -------------------------hcCCCEEEecCccccccc
Confidence 236899999999998643
No 25
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.38 E-value=1.2e-11 Score=126.50 Aligned_cols=202 Identities=23% Similarity=0.379 Sum_probs=117.8
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC--CCCCCChhHHHHHHHH--HHHhccCC
Q 004713 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKAIEI--LRRHCLND 86 (734)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLF--d~~kPs~~tl~~~~~l--Lr~l~~gd 86 (734)
.+||||.+||+|-.+ ..|.+++..|.+.++|+++++|||. |-..+-. +.+. +..+
T Consensus 2 ~~mkil~vtDlHg~~------------~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~-----~~~~~~~e~l---- 60 (226)
T COG2129 2 KKMKILAVTDLHGSE------------DSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEV-----AEELNKLEAL---- 60 (226)
T ss_pred CcceEEEEeccccch------------HHHHHHHHHHhhccCCEEEEecceehhhcCchHH-----HHhhhHHHHH----
Confidence 479999999999984 4688999999999999999999998 7664322 2222 2221
Q ss_pred CCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCcccee
Q 004713 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEIT 166 (734)
Q Consensus 87 ~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~ 166 (734)
...++|||+++||.|.+.- .++|..++ ++..++..
T Consensus 61 ----------------------------~~~~~~v~avpGNcD~~~v------~~~l~~~~-~~v~~~v~---------- 95 (226)
T COG2129 61 ----------------------------KELGIPVLAVPGNCDPPEV------IDVLKNAG-VNVHGRVV---------- 95 (226)
T ss_pred ----------------------------HhcCCeEEEEcCCCChHHH------HHHHHhcc-cccccceE----------
Confidence 1357999999999998743 25565543 45444321
Q ss_pred EEEEEEeeCCeeEEEEecCCC--ChHHHHhhhcCh---hhHhhccchhhhhccCCCceEEEEEccCCCCCC---CcCccc
Q 004713 167 VYPILIRKGSTAVALYGLGNI--RDERLNRMFQTP---HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN---PKNAIN 238 (734)
Q Consensus 167 v~Pill~kG~t~vaLyGL~~i--~derL~~~f~~~---~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~---~~~~I~ 238 (734)
+.++ +.+.|+|.. ..-...+.|.+. ..++++... .....||+++|.+..+.. +..+..
T Consensus 96 ------~i~~--~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~------~~~~~~Il~~HaPP~gt~~d~~~g~~h 161 (226)
T COG2129 96 ------EIGG--YGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKK------ADNPVNILLTHAPPYGTLLDTPSGYVH 161 (226)
T ss_pred ------EecC--cEEEEecccCCCCCCCccccCHHHHHHHHHHHHhc------ccCcceEEEecCCCCCccccCCCCccc
Confidence 1222 223333322 110000001000 112222221 123344999999876532 111111
Q ss_pred ------cccCCcCCC--EEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceEEEE
Q 004713 239 ------EHFLPRFLD--FVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306 (734)
Q Consensus 239 ------e~lLp~~~D--yVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~~e~ 306 (734)
..++ ..|+ +.++||+|+.... ..+. +..+++||+ +. ..+|+++++.+..++.+.
T Consensus 162 vGS~~vr~~i-eefqP~l~i~GHIHEs~G~-d~iG--~TivVNPG~-----~~-----~g~yA~i~l~~~~Vk~~~ 223 (226)
T COG2129 162 VGSKAVRKLI-EEFQPLLGLHGHIHESRGI-DKIG--NTIVVNPGP-----LG-----EGRYALIELEKEVVKLEQ 223 (226)
T ss_pred cchHHHHHHH-HHhCCceEEEeeecccccc-cccC--CeEEECCCC-----cc-----CceEEEEEecCcEEEEEE
Confidence 0111 2344 9999999987543 2332 468899999 22 457999999987665554
No 26
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.35 E-value=2e-11 Score=127.93 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=105.8
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHH-HHHHHHHHHhcCCCEEEEcCCCCCCCCCChh----HHHHHHHHHHHhccCCCCc
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEA-FEEICSIAEQKEVDFVLLGGDLFHENKPSRS----TLVKAIEILRRHCLNDRPV 89 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~a-FeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~----tl~~~~~lLr~l~~gd~p~ 89 (734)
|+|+||+|+|...... ... ++.+++.+++.++|+||++|||+|....... .......+++.+.
T Consensus 2 ~~~iSDlH~g~~~~~~------~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~------ 69 (256)
T cd07401 2 FVHISDIHVSSFHPPN------RAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILK------ 69 (256)
T ss_pred EEEecccccCCcCchh------hhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHH------
Confidence 7999999999654321 111 3667888889999999999999987653211 0111112222211
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEE
Q 004713 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYP 169 (734)
Q Consensus 90 ~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~P 169 (734)
.+. .-..+|+|.|+||||.............+. .|++.. ........
T Consensus 70 --------------~~~--------~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~-----~y~~~~------~~~~~~~~ 116 (256)
T cd07401 70 --------------ESS--------VINKEKWFDIRGNHDLFNIPSLDSENNYYR-----KYSATG------RDGSFSFS 116 (256)
T ss_pred --------------HhC--------CCCcceEEEeCCCCCcCCCCCccchhhHHH-----Hhheec------CCCccceE
Confidence 000 012589999999999842211101111111 111110 00000011
Q ss_pred EEEeeCCeeEEEEecCCCCh--HH----HHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcC-----ccc
Q 004713 170 ILIRKGSTAVALYGLGNIRD--ER----LNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKN-----AIN 238 (734)
Q Consensus 170 ill~kG~t~vaLyGL~~i~d--er----L~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~-----~I~ 238 (734)
...+ ...+++.|+..... .+ ....+. ...+.|+...... .......|+++|++.....+.. .+.
T Consensus 117 ~~~~--~~~~~~I~Ldt~~~~~~~~~~~~~g~l~-~~ql~wL~~~L~~--~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~ 191 (256)
T cd07401 117 HTTR--FGNYSFIGVDPTLFPGPKRPFNFFGSLD-KKLLDRLEKELEK--STNSNYTIWFGHYPTSTIISPSAKSSSKFK 191 (256)
T ss_pred EEec--CCCEEEEEEcCccCCCCCCCCceeccCC-HHHHHHHHHHHHh--cccCCeEEEEEcccchhccCCCcchhHHHH
Confidence 1111 12455566654310 00 000011 1334555332211 1234578999999874321110 011
Q ss_pred cccCCcCCCEEEeCccccccc-CCeecCCC-CceEecCCCCc
Q 004713 239 EHFLPRFLDFVVWGHEHECLI-DPQEVPGM-GFHLTQPGSSV 278 (734)
Q Consensus 239 e~lLp~~~DyVa~GH~H~~~i-~Pq~~~~~-~~~I~yPGS~v 278 (734)
+-+....++++++||+|.... .|+...+. ...|+||.++-
T Consensus 192 ~ll~~~~v~~vl~GH~H~~~~~~p~h~~~~~~~~~~~p~~~~ 233 (256)
T cd07401 192 DLLKKYNVTAYLCGHLHPLGGLEPVHYAGHPYALITNPKPSL 233 (256)
T ss_pred HHHHhcCCcEEEeCCccCCCcceeeeecCCceEEEeCCCChH
Confidence 112245799999999999887 66654432 24567776654
No 27
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.34 E-value=1.4e-11 Score=127.18 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=47.4
Q ss_pred EEEEcCCCCCCCCCc--hhch---hcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCc
Q 004713 15 ILVATDCHLGYMEKD--EIRR---HDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (734)
Q Consensus 15 ILh~SD~HLG~~e~d--~~R~---~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~ 89 (734)
|.++||+||+..... +..+ .+..+.+.++++.+. .++|+||++|||++...+. .....++.|+.
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-~~~D~viiaGDl~~~~~~~--~~~~~l~~l~~-------- 69 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVV-APEDIVLIPGDISWAMKLE--EAKLDLAWIDA-------- 69 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcC-CCCCEEEEcCCCccCCChH--HHHHHHHHHHh--------
Confidence 578999999963211 1112 223334444443333 2899999999999654322 23334444432
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 90 ~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
...|||+|+||||..
T Consensus 70 ---------------------------l~~~v~~V~GNHD~~ 84 (232)
T cd07393 70 ---------------------------LPGTKVLLKGNHDYW 84 (232)
T ss_pred ---------------------------CCCCeEEEeCCcccc
Confidence 234899999999974
No 28
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.33 E-value=1.3e-11 Score=123.80 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=40.2
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC
Q 004713 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS 68 (734)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs 68 (734)
+.|||+|+||+|+|..............++..+.+.+.+.+||+||++|||++...+.
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~ 58 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTN 58 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCc
Confidence 3699999999999986432101111133445555556678999999999999987764
No 29
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.27 E-value=3.8e-11 Score=123.96 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~ 65 (734)
||+|+||+|+++...+ ....++.+++.+.+.++|+||++|||++..
T Consensus 1 ki~~iSDlH~~~~~~~------~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~ 46 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFD------TEEMLETLAQYLKKQKIDHLHIAGDISNDF 46 (239)
T ss_pred CEEEEEeecCCCCCCC------HHHHHHHHHHHHHhcCCCEEEECCccccch
Confidence 6999999999754322 234578889988899999999999999863
No 30
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.26 E-value=2e-10 Score=117.23 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
++|++++|+|++.... + ......+++|++.+.+.++|+||++|||++.... ......+.++|+.+.
T Consensus 1 f~~~~~~D~q~~~~~~-~---~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-~~~~~~~~~~~~~l~--------- 66 (214)
T cd07399 1 FTLAVLPDTQYYTESY-P---EVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-DAEWEAADKAFARLD--------- 66 (214)
T ss_pred CEEEEecCCCcCCcCC-H---HHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-HHHHHHHHHHHHHHH---------
Confidence 6899999999975521 1 2223466888999999999999999999997752 233445555665541
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCC
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD 129 (734)
..++|+++++||||
T Consensus 67 -----------------------~~~~p~~~~~GNHD 80 (214)
T cd07399 67 -----------------------KAGIPYSVLAGNHD 80 (214)
T ss_pred -----------------------HcCCcEEEECCCCc
Confidence 25799999999999
No 31
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.23 E-value=1.8e-10 Score=114.64 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=44.3
Q ss_pred cCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceEEEEEECC
Q 004713 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLT 310 (734)
Q Consensus 244 ~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~~e~IpL~ 310 (734)
..+|.+++||+|.+... +.. +..+++|||+..... ..++.|+++++.+.++.+..+...
T Consensus 108 ~~~Dvli~GHTH~p~~~--~~~--~i~~vNPGS~s~pr~----~~~~sy~il~~~~~~~~~~~~~~~ 166 (172)
T COG0622 108 LGADVLIFGHTHKPVAE--KVG--GILLVNPGSVSGPRG----GNPASYAILDVDNLEVEVLFLERD 166 (172)
T ss_pred cCCCEEEECCCCcccEE--EEC--CEEEEcCCCcCCCCC----CCCcEEEEEEcCCCEEEEEEeecc
Confidence 35999999999998653 443 478999999965432 257799999999887777665443
No 32
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.23 E-value=5.1e-11 Score=122.75 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=48.2
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC---CChhHHHHHHHHHHHhccCCCCcce
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK---PSRSTLVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~k---Ps~~tl~~~~~lLr~l~~gd~p~~~ 91 (734)
++|+||+|+|....+ ..+.|-+.+.... .+||+|+++||+||... +.......+.+.|+.+.
T Consensus 1 ~~~iSDlHl~~~~~~------~~~~~l~~l~~~~-~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~-------- 65 (231)
T TIGR01854 1 TLFISDLHLSPERPD------ITALFLDFLREEA-RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVS-------- 65 (231)
T ss_pred CeEEEecCCCCCChh------HHHHHHHHHHhhh-ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHH--------
Confidence 379999999964321 1223333222221 28999999999999521 11222234445555431
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004713 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (734)
Q Consensus 92 e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~ 132 (734)
..++|||+|+||||...
T Consensus 66 ------------------------~~~~~v~~v~GNHD~~~ 82 (231)
T TIGR01854 66 ------------------------DQGVPCYFMHGNRDFLI 82 (231)
T ss_pred ------------------------HCCCeEEEEcCCCchhh
Confidence 34689999999999753
No 33
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.13 E-value=4.4e-10 Score=120.01 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=61.8
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCC-CCCChhHHHHHHHHHHHhccCC
Q 004713 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE-NKPSRSTLVKAIEILRRHCLND 86 (734)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~-~kPs~~tl~~~~~lLr~l~~gd 86 (734)
.....+||+|+||+|..... ....+.+..++ .+.+|+|+++||+++. ..+... .++..|.++
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~---------~~~~~~~~~i~-~~~~DlivltGD~~~~~~~~~~~---~~~~~L~~L---- 102 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFR---------EEKLALLIAIA-NELPDLIVLTGDYVDGDRPPGVA---ALALFLAKL---- 102 (284)
T ss_pred cccCCeEEEEeehhhhchhh---------HHHHHHHHHHH-hcCCCEEEEEeeeecCCCCCCHH---HHHHHHHhh----
Confidence 34577899999999998543 11223444444 4455999999999996 444433 455566554
Q ss_pred CCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCC
Q 004713 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN 147 (734)
Q Consensus 87 ~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~g 147 (734)
....+||+|.||||..........-+++...+
T Consensus 103 -----------------------------~~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~ 134 (284)
T COG1408 103 -----------------------------KAPLGVFAVLGNHDYGVDRSNVYIGDLLEELG 134 (284)
T ss_pred -----------------------------hccCCEEEEecccccccccccchhhhhhhhcc
Confidence 46789999999999987654322124555444
No 34
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.12 E-value=2.1e-09 Score=113.30 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=53.7
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC-hhHHHHHHHHHHHhccCCCC
Q 004713 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS-RSTLVKAIEILRRHCLNDRP 88 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs-~~tl~~~~~lLr~l~~gd~p 88 (734)
.+.+||++++|+|.+.. .+.++++.+.+. ..++||||++|||....... .......++.+..+
T Consensus 2 ~~~~~f~v~gD~~~~~~--------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~------ 65 (294)
T cd00839 2 DTPFKFAVFGDMGQNTN--------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPL------ 65 (294)
T ss_pred CCcEEEEEEEECCCCCC--------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHH------
Confidence 45799999999998622 123455555443 47999999999998654322 12223344444432
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004713 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (734)
Q Consensus 89 ~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g 133 (734)
...+|+++++||||....
T Consensus 66 ---------------------------~~~~P~~~~~GNHD~~~~ 83 (294)
T cd00839 66 ---------------------------ASYVPYMVTPGNHEADYN 83 (294)
T ss_pred ---------------------------HhcCCcEEcCcccccccC
Confidence 236899999999998653
No 35
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.10 E-value=5.7e-09 Score=109.31 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=58.8
Q ss_pred hHhhccchhhhhccCCCceEEEEEccCCCCCCCcCc---cc---cccC-CcCCCEEEeCcccccccCCeecCCCCceEec
Q 004713 201 AVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---IN---EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (734)
Q Consensus 201 ~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~---I~---e~lL-p~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~y 273 (734)
.+.|+...... ....+.|++.|.+......... .. ..++ ...+++|++||.|...... ....+...+.
T Consensus 153 Q~~wL~~~L~~---~~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~--~~~~~~~~i~ 227 (277)
T cd07378 153 QLAWLEKTLAA---STADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK--DDGSGTSFVV 227 (277)
T ss_pred HHHHHHHHHHh---cCCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeee--cCCCCcEEEE
Confidence 46677554322 1235789999998754322111 11 1223 3459999999999876531 1111344444
Q ss_pred CCCCccc--ccc----------cCccCCcEEEEEEEeCCceEEEEEEC
Q 004713 274 PGSSVAT--SLI----------EGESKPKHVLLLEIKENQYRPTKIPL 309 (734)
Q Consensus 274 PGS~v~t--Sl~----------EgE~~~Kgv~LVeI~~~~~~~e~IpL 309 (734)
.|+.-.. ... .......||.+++|.++.+.++++..
T Consensus 228 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~ 275 (277)
T cd07378 228 SGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDA 275 (277)
T ss_pred eCCCcccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEEEECC
Confidence 4443211 110 00124589999999999888888754
No 36
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.08 E-value=1.4e-09 Score=112.48 Aligned_cols=213 Identities=21% Similarity=0.275 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCCCCh-hHHHHHHHHHHHhccCCCCcc
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQ 90 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD-~VLiaGDLFd~~kPs~-~tl~~~~~lLr~l~~gd~p~~ 90 (734)
++|+|+||+| |....- -..-.+..+..+++..+++++| ++|.+||+++...++. ......+++|..
T Consensus 1 l~i~~~sD~h-g~~~~~--~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~--------- 68 (252)
T cd00845 1 LTILHTNDLH-GHFEPA--GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNA--------- 68 (252)
T ss_pred CEEEEecccc-cCcccc--CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHh---------
Confidence 5899999999 543210 0112356788888888888899 7789999998775532 111122333322
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeecccee-ecCCCccceeEEE
Q 004713 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMV-LGGSGVGEITVYP 169 (734)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~-l~~~~~~~i~v~P 169 (734)
.++ .+++.||||...+...+ ...+...++. +++... ..........+.|
T Consensus 69 --------------------------~g~-d~~~~GNHe~d~g~~~l--~~~~~~~~~~-~l~aNv~~~~~~~~~~~~~~ 118 (252)
T cd00845 69 --------------------------LGY-DAVTIGNHEFDYGLDAL--AELYKDANFP-VLSANLYDKDTGTGPPWAKP 118 (252)
T ss_pred --------------------------cCC-CEEeeccccccccHHHH--HHHHHhCCCC-EEEEeeeccCCCCCCCCcCC
Confidence 233 34566999986654422 2344444421 111100 0000000011223
Q ss_pred -EEEeeCCeeEEEEecCCCChHHHHh-------hhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCcccccc
Q 004713 170 -ILIRKGSTAVALYGLGNIRDERLNR-------MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (734)
Q Consensus 170 -ill~kG~t~vaLyGL~~i~derL~~-------~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~l 241 (734)
.++..++.+|++.|+.......... .+... ...+... .........+.|++.|...... ..+.+.+
T Consensus 119 ~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~D~vIvl~H~g~~~~---~~la~~~ 192 (252)
T cd00845 119 YKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDL--AEAVAVA-EELLAEGADVIILLSHLGLDDD---EELAEEV 192 (252)
T ss_pred eEEEEECCEEEEEEEeccccceeecCCCcccCceecCH--HHHHHHH-HHHHhCCCCEEEEEeccCccch---HHHHhcC
Confidence 3456678999999986542211000 00110 1111000 0001135679999999875421 0111122
Q ss_pred CCcCCCEEEeCcccccccCCeecCCCCceEecCCCC
Q 004713 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (734)
Q Consensus 242 Lp~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~ 277 (734)
.++|+|+.||.|..+..|... .+..++|+|+-
T Consensus 193 --~giDlvlggH~H~~~~~~~~~--~~~~v~~~g~~ 224 (252)
T cd00845 193 --PGIDVILGGHTHHLLEEPEVV--NGTLIVQAGKY 224 (252)
T ss_pred --CCccEEEcCCcCcccCCCccc--CCEEEEeCChh
Confidence 479999999999976543222 35678888863
No 37
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.07 E-value=1.3e-09 Score=113.54 Aligned_cols=65 Identities=29% Similarity=0.342 Sum_probs=45.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
+||+++||+|..+.. ..++.+.+.+||+||++||+.+.. ...++.|++
T Consensus 1 ~rIa~isDiHg~~~~--------------~~~~~l~~~~pD~Vl~~GDi~~~~-------~~~~~~l~~----------- 48 (238)
T cd07397 1 LRIAIVGDVHGQWDL--------------EDIKALHLLQPDLVLFVGDFGNES-------VQLVRAISS----------- 48 (238)
T ss_pred CEEEEEecCCCCchH--------------HHHHHHhccCCCEEEECCCCCcCh-------HHHHHHHHh-----------
Confidence 689999999976421 112345667899999999998642 123333332
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g 133 (734)
...|+|+|.||||....
T Consensus 49 ------------------------l~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 49 ------------------------LPLPKAVILGNHDAWYD 65 (238)
T ss_pred ------------------------CCCCeEEEcCCCccccc
Confidence 24799999999998654
No 38
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.05 E-value=1.2e-09 Score=113.22 Aligned_cols=80 Identities=31% Similarity=0.451 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
|||+|+||+|++. ...+....++.+++.++..++|+||++|||.+... ......+.++|++
T Consensus 1 ~~i~~isD~H~~~------~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~--~~~~~~~~~~l~~----------- 61 (301)
T COG1409 1 MRIAHISDLHLGA------LGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGE--PEEYRRLKELLAR----------- 61 (301)
T ss_pred CeEEEEecCcccc------cccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCC--HHHHHHHHHHHhh-----------
Confidence 7999999999995 23345667888888888899999999999999843 3333334444431
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g 133 (734)
.....|+++++||||....
T Consensus 62 ----------------------~~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 62 ----------------------LELPAPVIVVPGNHDARVV 80 (301)
T ss_pred ----------------------ccCCCceEeeCCCCcCCch
Confidence 1357899999999998654
No 39
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.02 E-value=1.3e-08 Score=116.66 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=37.0
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH---------hcCCCEEEEcCCCCCCC
Q 004713 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE---------QKEVDFVLLGGDLFHEN 65 (734)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~---------e~~VD~VLiaGDLFd~~ 65 (734)
.....++|+++||+|+|..... ...|+.+++... ..+||.||++||+|+..
T Consensus 239 ~~~~~~~i~~ISDlHlgs~~~~-------~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~ 298 (504)
T PRK04036 239 TKDEKVYAVFISDVHVGSKEFL-------EDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGI 298 (504)
T ss_pred cCCCccEEEEEcccCCCCcchh-------HHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccc
Confidence 3355689999999999975321 123445555544 77899999999999863
No 40
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.00 E-value=2.1e-09 Score=111.52 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=29.8
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH--hcCCCEEEEcCCCCCCC
Q 004713 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--QKEVDFVLLGGDLFHEN 65 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~--e~~VD~VLiaGDLFd~~ 65 (734)
+|+||+|||..... ...++.|.+.+.... ..++|+|+++||+|+..
T Consensus 2 ~~iSDlHl~~~~~~----~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~ 49 (243)
T cd07386 2 VFISDVHVGSKTFL----EDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGI 49 (243)
T ss_pred EEecccCCCchhhh----HHHHHHHHHHHcCCcccccCccEEEEeCCccccc
Confidence 78999999975422 122334444433222 13679999999999974
No 41
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.99 E-value=2.2e-09 Score=101.27 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~ 81 (734)
||+++||+|..+. .....++|+|+++||+++...+ ..+..++++|++
T Consensus 1 ~i~~isD~H~~~~-------------------~~~~~~~D~vi~~GD~~~~~~~--~~~~~~~~~l~~ 47 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TISIPDGDVLIHAGDLTERGTL--EELQKFLDWLKS 47 (135)
T ss_pred CEEEEeCCCCCCC-------------------cCcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh
Confidence 6999999997743 1134689999999999987643 233445555543
No 42
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.97 E-value=1e-09 Score=108.12 Aligned_cols=83 Identities=27% Similarity=0.363 Sum_probs=58.8
Q ss_pred EEEcCCCCCCCCC----c-hhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcc
Q 004713 16 LVATDCHLGYMEK----D-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (734)
Q Consensus 16 Lh~SD~HLG~~e~----d-~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~ 90 (734)
|++||+|||+... + .....+..++++.+++++.+.+||.|+++|||||...+........+.++..
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~--------- 71 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRL--------- 71 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHh---------
Confidence 6899999998642 1 1233344578899999999999999999999999866544332222221111
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
...++||++|.||||..
T Consensus 72 ------------------------~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 72 ------------------------LAKDVDVILIRGNHDGG 88 (172)
T ss_pred ------------------------ccCCCeEEEEcccCccc
Confidence 14578999999999974
No 43
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.97 E-value=2.1e-09 Score=104.44 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kP 67 (734)
|+++||+|++...... .+...+.+.++|+|+++|||++...+
T Consensus 1 ~~~iSDlH~~~~~~~~-----------~~~~~~~~~~~d~li~~GDi~~~~~~ 42 (166)
T cd07404 1 IQYLSDLHLEFEDNLA-----------DLLNFPIAPDADILVLAGDIGYLTDA 42 (166)
T ss_pred CceEccccccCccccc-----------cccccCCCCCCCEEEECCCCCCCcch
Confidence 5799999999753211 01134567899999999999987643
No 44
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.94 E-value=2.6e-09 Score=109.57 Aligned_cols=228 Identities=23% Similarity=0.376 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004713 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~ 91 (734)
+=|||-+||.|-. ++.++.++..+.+.++|+|+++|||.-....+.. ..++... ++. -||+.-.
T Consensus 5 ~~kilA~s~~~g~------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e-~~~a~~~-~r~--p~k~~i~ 68 (255)
T PF14582_consen 5 VRKILAISNFRGD------------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDE-YERAQEE-QRE--PDKSEIN 68 (255)
T ss_dssp --EEEEEE--TT-------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHH-HHHHHHT-T------THHHH
T ss_pred chhheeecCcchH------------HHHHHHHHhhccccCCCEEEEeccccccchhhhH-HHHHhhh-ccC--cchhhhh
Confidence 3589999998865 5678889999999999999999999854321111 1101000 000 0111000
Q ss_pred ee---echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhh----hCCceeeccceeecCCCccc
Q 004713 92 QV---VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS----ACNLVNYFGKMVLGGSGVGE 164 (734)
Q Consensus 92 e~---lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~----~~glVn~FGk~~l~~~~~~~ 164 (734)
+- .+..-.+|.+.++ ..++|+|+||||||.|... .+. +.+. .+++.++-+.
T Consensus 69 ~e~~~~~e~~~~ff~~L~---------~~~~p~~~vPG~~Dap~~~-~lr--~a~~~e~v~p~~~~vH~s---------- 126 (255)
T PF14582_consen 69 EEECYDSEALDKFFRILG---------ELGVPVFVVPGNMDAPERF-FLR--EAYNAEIVTPHIHNVHES---------- 126 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH---------CC-SEEEEE--TTS-SHHH-HHH--HHHHCCCC-TTEEE-CTC----------
T ss_pred hhhhhhHHHHHHHHHHHH---------hcCCcEEEecCCCCchHHH-HHH--HHhccceeccceeeeeee----------
Confidence 00 0000012322222 4689999999999998642 111 1111 1222121111
Q ss_pred eeEEEEEEeeCCeeEEEEecCCC-----C--hHHHHhhh-cChhhHhhccchhhhhccCCCceEEEEEccCC-CCCC---
Q 004713 165 ITVYPILIRKGSTAVALYGLGNI-----R--DERLNRMF-QTPHAVQWMRPEAQEECQVSDWFNILVLHQNR-VKTN--- 232 (734)
Q Consensus 165 i~v~Pill~kG~t~vaLyGL~~i-----~--derL~~~f-~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~-~~~~--- 232 (734)
+...+| .+.+.|+|-. + ...|..-+ .....++++.. ....-.|+++|++. ...+
T Consensus 127 -----f~~~~g--~y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~e-------lk~~r~IlLfhtpPd~~kg~~h 192 (255)
T PF14582_consen 127 -----FFFWKG--EYLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRE-------LKDYRKILLFHTPPDLHKGLIH 192 (255)
T ss_dssp -----EEEETT--TEEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGG-------CTSSEEEEEESS-BTBCTCTBT
T ss_pred -----ecccCC--cEEEEecCccccCCCccccccccchHHHHHHHHHHHHh-------cccccEEEEEecCCccCCCccc
Confidence 111122 2333444321 1 11110000 00011223221 23557899999987 2211
Q ss_pred -CcCccccccC-CcCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEeCCceEEE
Q 004713 233 -PKNAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305 (734)
Q Consensus 233 -~~~~I~e~lL-p~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~~~~~~e 305 (734)
+...+ .+++ ...-++|++||+|+.... ..+. ..+|++|||. .+| .+.+|++.++++.+.
T Consensus 193 ~GS~~V-~dlIk~~~P~ivl~Ghihe~~~~-e~lG--~TlVVNPGsL-----~~G-----~yAvI~l~~~~v~~g 253 (255)
T PF14582_consen 193 VGSAAV-RDLIKTYNPDIVLCGHIHESHGK-ESLG--KTLVVNPGSL-----AEG-----DYAVIDLEQDKVEFG 253 (255)
T ss_dssp TSBHHH-HHHHHHH--SEEEE-SSS-EE---EEET--TEEEEE--BG-----GGT-----EEEEEETTTTEEEEE
T ss_pred ccHHHH-HHHHHhcCCcEEEecccccchhh-HHhC--CEEEecCccc-----ccC-----ceeEEEecccccccC
Confidence 11111 1222 235789999999997643 3343 4789999986 223 799999988776543
No 45
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.92 E-value=1.6e-08 Score=106.77 Aligned_cols=214 Identities=18% Similarity=0.269 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCCCCCCc-----hhchhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChhH-------HHHHHHHH
Q 004713 13 VRILVATDCHLGYMEKD-----EIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-------LVKAIEIL 79 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d-----~~R~~Ds~~aFeeIl~~A~e~~VD~VLi-aGDLFd~~kPs~~t-------l~~~~~lL 79 (734)
++|||++|+| |+.+.. .....-.+..+..+++..+++++|.|++ +||+|+....+... ....+++|
T Consensus 1 l~il~t~D~H-g~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLH-GNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccc-cceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHH
Confidence 5899999999 654311 0001123567788888888889999998 99999865211100 01123333
Q ss_pred HHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCce----eeccce
Q 004713 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLV----NYFGKM 155 (734)
Q Consensus 80 r~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glV----n~FGk~ 155 (734)
+. .+.. ++..||||...+...+ .+.+...++- |+....
T Consensus 80 n~-----------------------------------~g~d-~~~lGNHe~d~g~~~l--~~~~~~~~~~~l~aNv~~~~ 121 (277)
T cd07410 80 NA-----------------------------------LGYD-AGTLGNHEFNYGLDYL--DKVIKQANFPVLSANVIDAD 121 (277)
T ss_pred Hh-----------------------------------cCCC-EEeecccCcccCHHHH--HHHHHhCCCCEEEEEEEeCC
Confidence 32 2344 5556999976554322 2344444321 221110
Q ss_pred eecCCCccceeEEEE-EEeeC-CeeEEEEecCCCChHHHH-------hhhcCh-hhHhhccchhhhhccCCCceEEEEEc
Q 004713 156 VLGGSGVGEITVYPI-LIRKG-STAVALYGLGNIRDERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLH 225 (734)
Q Consensus 156 ~l~~~~~~~i~v~Pi-ll~kG-~t~vaLyGL~~i~derL~-------~~f~~~-~~v~~l~p~~~~~~~~~~~fnILvlH 225 (734)
.+ .-.+.|. +++.+ +.+|+++|+-...-.... -.|.++ ..+.....+... ..-.+-|++.|
T Consensus 122 ----~~--~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H 192 (277)
T cd07410 122 ----TG--EPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAH 192 (277)
T ss_pred ----CC--CcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEec
Confidence 00 1112353 45677 899999998532110000 001111 011111111111 13468899999
Q ss_pred cCCCCCCCcCccc----cccCC--cCCCEEEeCcccccccCCeecCCCCceEecCCCC
Q 004713 226 QNRVKTNPKNAIN----EHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (734)
Q Consensus 226 qn~~~~~~~~~I~----e~lLp--~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~ 277 (734)
............. ..++. .++|+|+.||.|.....+ . ..+..++++|+-
T Consensus 193 ~g~~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~-~--~~~~~v~q~g~~ 247 (277)
T cd07410 193 GGFERDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPGP-T--VNGVPVVQPGNW 247 (277)
T ss_pred CCcCCCcccccCCccHHHHHHhcCCCCcEEEeCCCccccccC-C--cCCEEEEcCChh
Confidence 8765321000011 11221 379999999999875432 1 234678888763
No 46
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.89 E-value=2.9e-09 Score=107.19 Aligned_cols=44 Identities=25% Similarity=0.173 Sum_probs=29.4
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q 004713 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~ 65 (734)
+++||+|||...... ...+...+....+.++|.|+++||+||..
T Consensus 1 ~~iSDlHlg~~~~~~------~~~~~~~~~~~~~~~~~~lvl~GDi~d~~ 44 (217)
T cd07398 1 LFISDLHLGDGGPAA------DFLLLFLLAALALGEADALYLLGDIFDLW 44 (217)
T ss_pred CEeeeecCCCCCCCH------HHHHHHHHhhhccCCCCEEEEeccEEEEE
Confidence 579999999765432 12233333222257999999999999853
No 47
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.85 E-value=1.2e-08 Score=100.29 Aligned_cols=52 Identities=23% Similarity=0.166 Sum_probs=32.1
Q ss_pred EEEcCCCCCCCCCc--hhchhcHHH-HHHHHHHHHHhc--CCCEEEEcCCCCCCCCC
Q 004713 16 LVATDCHLGYMEKD--EIRRHDSFE-AFEEICSIAEQK--EVDFVLLGGDLFHENKP 67 (734)
Q Consensus 16 Lh~SD~HLG~~e~d--~~R~~Ds~~-aFeeIl~~A~e~--~VD~VLiaGDLFd~~kP 67 (734)
.++||+|||+...- +.+...... ..+.+++...+. ++|.|+++|||++...+
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~ 58 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKA 58 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCCh
Confidence 57999999985311 111111112 234455555443 79999999999997654
No 48
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.83 E-value=7.2e-09 Score=107.25 Aligned_cols=83 Identities=27% Similarity=0.296 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCCCCCCch-----hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCC
Q 004713 13 VRILVATDCHLGYMEKDE-----IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~-----~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~ 87 (734)
-+.|++||+|||+...-. ....+..++|+.+.+++.+.+||.||++||+||...+. .+...+.++|+.
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-~~~~~~~~~l~~------ 87 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-LEWRFIREFIEV------ 87 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-HHHHHHHHHHHh------
Confidence 468999999999854211 22235557889999999999999999999999987654 333344445543
Q ss_pred CcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 88 p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
...++++|+||||..
T Consensus 88 -----------------------------~~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 88 -----------------------------TFRDLILIRGNHDAL 102 (225)
T ss_pred -----------------------------cCCcEEEECCCCCCc
Confidence 235999999999964
No 49
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.82 E-value=3.1e-08 Score=103.97 Aligned_cols=212 Identities=18% Similarity=0.221 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCCCChh-HHHHHHHHHHHhccCCCCcc
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRS-TLVKAIEILRRHCLNDRPVQ 90 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD-~VLiaGDLFd~~kPs~~-tl~~~~~lLr~l~~gd~p~~ 90 (734)
++|||++|+| +..... ....-.+..+..+++..+++++| ++|.+||+|+....+.. .....++.|+.+
T Consensus 1 ~~il~~nd~~-~~~~~~-~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l-------- 70 (257)
T cd07406 1 FTILHFNDVY-EIAPLD-GGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL-------- 70 (257)
T ss_pred CeEEEEccce-eecccC-CCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc--------
Confidence 5899999999 433211 01112356777888888888888 99999999986532210 001223333321
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccce-eecCC--CccceeE
Q 004713 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKM-VLGGS--GVGEITV 167 (734)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~-~l~~~--~~~~i~v 167 (734)
+. .+++.||||...+...+. .++..+++ .+++.. ..... .+..+.
T Consensus 71 ---------------------------~~-d~~~~GNHefd~g~~~l~--~~~~~~~~-~~L~aNi~~~~~~~~~~~~~- 118 (257)
T cd07406 71 ---------------------------GV-DLACFGNHEFDFGEDQLQ--KRLGESKF-PWLSSNVFDATGGGPLPNGK- 118 (257)
T ss_pred ---------------------------CC-cEEeecccccccCHHHHH--HHHhhCCC-CEEEEEEEECCCCcccCCCC-
Confidence 22 366789999866544322 33444432 111110 00000 000011
Q ss_pred EEEEEeeCCeeEEEEecCCCChH-HHH-----hhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCcccccc
Q 004713 168 YPILIRKGSTAVALYGLGNIRDE-RLN-----RMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (734)
Q Consensus 168 ~Pill~kG~t~vaLyGL~~i~de-rL~-----~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~l 241 (734)
...+++.++.+|+++|+-..... .+. -.|.++ ++.+......-....-.+-|++.|...... ..+...+
T Consensus 119 ~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d---~~la~~~ 193 (257)
T cd07406 119 ESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDY--VETARELVDELREQGADLIIALTHMRLPND---KRLAREV 193 (257)
T ss_pred CeEEEEECCeEEEEEEEecccccccccCCCCcceEcCH--HHHHHHHHHHHHhCCCCEEEEEeccCchhh---HHHHHhC
Confidence 12455678899999998543211 000 001111 111100000000124578899999864211 1122222
Q ss_pred CCcCCCEEEeCcccccccCCeecCCCCceEecCCCC
Q 004713 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (734)
Q Consensus 242 Lp~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~ 277 (734)
.++|+|+.||.|..+.. .. .+..+++||+-
T Consensus 194 --~~iD~IlgGH~H~~~~~--~~--~~t~vv~~g~~ 223 (257)
T cd07406 194 --PEIDLILGGHDHEYILV--QV--GGTPIVKSGSD 223 (257)
T ss_pred --CCCceEEecccceeEee--eE--CCEEEEeCCcC
Confidence 46999999999997632 22 24678888753
No 50
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.75 E-value=9.2e-08 Score=100.61 Aligned_cols=226 Identities=17% Similarity=0.206 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCCCCCCchh----------chhcHHHHHHHHHHHHHhc-CCCEEE-EcCCCCCCCCCChh-HHHHHHHHH
Q 004713 13 VRILVATDCHLGYMEKDEI----------RRHDSFEAFEEICSIAEQK-EVDFVL-LGGDLFHENKPSRS-TLVKAIEIL 79 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~----------R~~Ds~~aFeeIl~~A~e~-~VD~VL-iaGDLFd~~kPs~~-tl~~~~~lL 79 (734)
++|||++|+|--+...... ...-.+..+..+++.+++. .+|.|+ .+||+|+....+.. .....+++|
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l 80 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDAL 80 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHH
Confidence 5799999999876442110 0112367788888888888 999885 59999987632210 001122222
Q ss_pred HHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecC
Q 004713 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGG 159 (734)
Q Consensus 80 r~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~ 159 (734)
+ .+++.++.||||...+...+ ...+...++ .+++.... .
T Consensus 81 ~-------------------------------------~~g~da~~GNHefd~g~~~l--~~~~~~~~~-~~l~aN~~-~ 119 (264)
T cd07411 81 N-------------------------------------ALGVDAMVGHWEFTYGPERV--RELFGRLNW-PFLAANVY-D 119 (264)
T ss_pred H-------------------------------------hhCCeEEecccccccCHHHH--HHHHhhCCC-CEEEEEEE-e
Confidence 2 14444444999986654432 234444442 11111000 0
Q ss_pred CCccceeEEEE-EEeeCCeeEEEEecCCCChHHHH-------hhhcCh-hhHhhccchhhhhccCCCceEEEEEccCCCC
Q 004713 160 SGVGEITVYPI-LIRKGSTAVALYGLGNIRDERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVK 230 (734)
Q Consensus 160 ~~~~~i~v~Pi-ll~kG~t~vaLyGL~~i~derL~-------~~f~~~-~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~ 230 (734)
.......+.|. +++.++.+|+|.|+......... -.|.++ ..+.....+... .....+-|++.|.....
T Consensus 120 ~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~iI~l~H~g~~~ 197 (264)
T cd07411 120 DEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRR--EEGVDVVVLLSHNGLPV 197 (264)
T ss_pred CCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHH--hCCCCEEEEEecCCchh
Confidence 00011123343 34778899999999654211100 001110 001000011100 12457899999986532
Q ss_pred CCCcCccccccCCcCCCEEEeCcccccccCCeecCCCCceEecCCCCcccccccCccCCcEEEEEEEe
Q 004713 231 TNPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIK 298 (734)
Q Consensus 231 ~~~~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~ 298 (734)
. ..+.+.+ .++|+|+.||.|.....|.. ...+.+++|+|+- -+.+..|++.
T Consensus 198 ~---~~la~~~--~~iDlilgGH~H~~~~~~~~-~~~~t~v~~~g~~-----------~~~vg~i~l~ 248 (264)
T cd07411 198 D---VELAERV--PGIDVILSGHTHERTPKPII-AGGGTLVVEAGSH-----------GKFLGRLDLD 248 (264)
T ss_pred h---HHHHhcC--CCCcEEEeCcccccccCccc-ccCCEEEEEcCcc-----------ccEEEEEEEE
Confidence 1 1111222 46999999999986544311 1234678888753 4456666653
No 51
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.73 E-value=3.3e-07 Score=96.11 Aligned_cols=217 Identities=19% Similarity=0.249 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhH-HHHHHHHHHHhccCCCCcce
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~t-l~~~~~lLr~l~~gd~p~~~ 91 (734)
++|||++|+|-.+...+. ..-.+..+..+++.++++..+++|.+||+|+....+... ....+++|+
T Consensus 1 i~il~~~D~H~~~~~~~~--~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln----------- 67 (257)
T cd07408 1 ITILHTNDIHGRIDEDDN--NGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMN----------- 67 (257)
T ss_pred CEEEEeccCcccccCCCC--ccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHH-----------
Confidence 689999999954432211 111245566666666655778999999999865322110 011222222
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEE
Q 004713 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (734)
Q Consensus 92 e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pil 171 (734)
..++-++ ..||||...+...+ ..++...++ -+++...... ..+.-.+.|..
T Consensus 68 ------------------------~~g~d~~-~~GNHefd~G~~~l--~~~~~~~~~-~~l~aNv~~~-~~~~~~~~py~ 118 (257)
T cd07408 68 ------------------------AVGYDAV-TPGNHEFDYGLDRL--KELSKEADF-PFLSANVYDN-DTGKRVFKPYK 118 (257)
T ss_pred ------------------------hcCCcEE-ccccccccCCHHHH--HHHHhhCCC-CEEEEEEEEc-CCCCcccCCEE
Confidence 2355565 46999976554322 233443332 1221110000 00111234543
Q ss_pred E-eeC-CeeEEEEecCCCCh------HHHHh-hhcCh-hhHhhc-cchhhhhccCCCceEEEEEccCCCCCCCcCccccc
Q 004713 172 I-RKG-STAVALYGLGNIRD------ERLNR-MFQTP-HAVQWM-RPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEH 240 (734)
Q Consensus 172 l-~kG-~t~vaLyGL~~i~d------erL~~-~f~~~-~~v~~l-~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~ 240 (734)
+ ..+ +.+|++.|+-...- ..+.. .|.++ ..++.. ..... .....+-|++.|.......+. +-...
T Consensus 119 i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~---~~~~D~iIvl~H~G~~~~~~~-~~~~~ 194 (257)
T cd07408 119 IKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDPIEEAKKVIVAALK---AKGADVIVALGHLGVDRTSSP-WTSTE 194 (257)
T ss_pred EEEcCCCCEEEEEeecCcCcccccCccccCCcEEecHHHHHHHHHHHHHH---hCCCCEEEEEeCcCcCCCCCC-ccHHH
Confidence 3 556 78999999753210 00000 01111 001111 11110 124568899999876543111 00011
Q ss_pred cC--CcCCCEEEeCcccccccCCeecCCCCceEecCCC
Q 004713 241 FL--PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (734)
Q Consensus 241 lL--p~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS 276 (734)
+. -.++|+|+.||.|.....+. ....+..++|+|+
T Consensus 195 la~~~~giDvIigGH~H~~~~~~~-~~~~~~~ivq~g~ 231 (257)
T cd07408 195 LAANVTGIDLIIDGHSHTTIEIGK-KDGNNVLLTQTGA 231 (257)
T ss_pred HHHhCCCceEEEeCCCcccccCcc-cccCCeEEEcCCh
Confidence 11 13699999999999765421 1123467888875
No 52
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.71 E-value=2.4e-07 Score=99.01 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCCCCCch---hchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCC
Q 004713 13 VRILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~---~R~~Ds~~aFeeIl~~A~e~~VD-~VLiaGDLFd~~ 65 (734)
++|||++|+| |+..... ....-.+..+..+++..+++.++ ++|.+||+|..+
T Consensus 1 i~il~tnD~H-g~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs 56 (288)
T cd07412 1 VQILAINDFH-GRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGAS 56 (288)
T ss_pred CeEEEEeccc-cCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccc
Confidence 5899999999 5433211 01112356777888888777765 889999999644
No 53
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.71 E-value=8.4e-08 Score=86.17 Aligned_cols=69 Identities=32% Similarity=0.495 Sum_probs=47.9
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeec
Q 004713 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVS 95 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lS 95 (734)
++++|+|.+...... ... .....+.++|+||++||+++...+........ +..+
T Consensus 1 ~~~gD~h~~~~~~~~---------~~~-~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~---~~~~------------- 54 (131)
T cd00838 1 AVISDIHGNLEALEA---------VLE-AALAAAEKPDFVLVLGDLVGDGPDPEEVLAAA---LALL------------- 54 (131)
T ss_pred CeeecccCCccchHH---------HHH-HHHhcccCCCEEEECCcccCCCCCchHHHHHH---HHHh-------------
Confidence 589999999653211 000 35567799999999999999887765432221 1111
Q ss_pred hhhhhcccccCccccCCCCCCCCCcEEEEcCCCC
Q 004713 96 DQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (734)
Q Consensus 96 d~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD 129 (734)
....+|++++.||||
T Consensus 55 -------------------~~~~~~~~~~~GNHD 69 (131)
T cd00838 55 -------------------LLLGIPVYVVPGNHD 69 (131)
T ss_pred -------------------hcCCCCEEEeCCCce
Confidence 256899999999999
No 54
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.63 E-value=7.8e-08 Score=93.94 Aligned_cols=83 Identities=27% Similarity=0.299 Sum_probs=49.3
Q ss_pred EEEcCCCCCCCCCchh-----chhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCCh-hHHHHHHHHHHHhccCCCCc
Q 004713 16 LVATDCHLGYMEKDEI-----RRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPV 89 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~-----R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~-~tl~~~~~lLr~l~~gd~p~ 89 (734)
+++||+||++...... +......+|+ ..+.+.+||+|+++|||||...+.. ......+..+.+..
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~---~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~------ 71 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQ---TSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMF------ 71 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHH---HHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHh------
Confidence 4689999975433221 1111222343 4445679999999999999875533 22223333333321
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 90 ~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
. ...++|+++|+||||..
T Consensus 72 ----------------~--------~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 72 ----------------G--------HPPDLPLHVVVGNHDIG 89 (156)
T ss_pred ----------------c--------cCCCCeEEEEcCCCCcC
Confidence 0 01368999999999974
No 55
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.60 E-value=5.4e-07 Score=95.90 Aligned_cols=199 Identities=18% Similarity=0.229 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCCCCCCchh---------chhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChhH-HHHHHHHHHH
Q 004713 13 VRILVATDCHLGYMEKDEI---------RRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRR 81 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~---------R~~Ds~~aFeeIl~~A~e~~VD~VLi-aGDLFd~~kPs~~t-l~~~~~lLr~ 81 (734)
++|||++|+|--+...+.. ...-.+..+..+++.+++..++.|++ +||+|..+..+... -...+++|+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln- 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMN- 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHH-
Confidence 5899999999654322110 01113567778888888778885555 99999875332110 011222222
Q ss_pred hccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCC
Q 004713 82 HCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSG 161 (734)
Q Consensus 82 l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~ 161 (734)
..++.+.++ ||||...+...+. +.+...++ .+++.-.....+
T Consensus 80 ----------------------------------~~g~D~~~l-GNHefd~G~~~l~--~~~~~~~~-p~l~aNv~~~~~ 121 (281)
T cd07409 80 ----------------------------------LLGYDAMTL-GNHEFDDGVEGLA--PFLNNLKF-PVLSANIDTSNE 121 (281)
T ss_pred ----------------------------------hcCCCEEEe-ccccccCCHHHHH--HHHHhCCC-CEEEEeeecCCC
Confidence 235566655 9999887755332 23333331 122211100000
Q ss_pred --ccceeEEE-EEEeeCCeeEEEEecCCCChHHHHh-----hhcCh-hhHhhccchhhhhccCCCceEEEEEccCCCCCC
Q 004713 162 --VGEITVYP-ILIRKGSTAVALYGLGNIRDERLNR-----MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN 232 (734)
Q Consensus 162 --~~~i~v~P-ill~kG~t~vaLyGL~~i~derL~~-----~f~~~-~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~ 232 (734)
...-.+.| .++..++.+|+|.|+-......... .|.++ ..++...++... ..-.+-|++.|......
T Consensus 122 ~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~II~l~H~G~~~d- 197 (281)
T cd07409 122 PPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKA---QGVNKIIALSHSGYEVD- 197 (281)
T ss_pred ccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHh---cCCCEEEEEeccCchhH-
Confidence 00011344 3456788999999985422111100 01111 001111111110 12467889999865321
Q ss_pred CcCccccccCCcCCCEEEeCcccccc
Q 004713 233 PKNAINEHFLPRFLDFVVWGHEHECL 258 (734)
Q Consensus 233 ~~~~I~e~lLp~~~DyVa~GH~H~~~ 258 (734)
..+.+.+ .++|+|+.||.|...
T Consensus 198 --~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 198 --KEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred --HHHHHcC--CCCcEEEeCCcCccc
Confidence 1122222 469999999999975
No 56
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.54 E-value=1.4e-07 Score=97.71 Aligned_cols=79 Identities=27% Similarity=0.314 Sum_probs=50.4
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC---CChhHHHHHHHHHHHhccCCCCccee
Q 004713 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK---PSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~k---Ps~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
+++||+|||-.... .-..|.+.++.- +.+.|.|.+.|||||.-. +......++...|+++.
T Consensus 1 lFISDlHL~~~~p~------~t~~fl~Fl~~~-a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a--------- 64 (237)
T COG2908 1 LFISDLHLGPKRPA------LTAFFLDFLREE-AAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA--------- 64 (237)
T ss_pred CeeeccccCCCCcH------HHHHHHHHHHhc-cccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH---------
Confidence 57999999954322 223454544332 226699999999998642 22233344445555431
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g 133 (734)
..|.|||.||||||.-.+
T Consensus 65 -----------------------~~G~~v~~i~GN~Dfll~ 82 (237)
T COG2908 65 -----------------------RKGTRVYYIHGNHDFLLG 82 (237)
T ss_pred -----------------------hcCCeEEEecCchHHHHH
Confidence 468999999999996544
No 57
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=98.51 E-value=1e-06 Score=95.04 Aligned_cols=103 Identities=20% Similarity=0.395 Sum_probs=61.8
Q ss_pred CCCCCCceEEEEEcCCCCCCCCC----chhchh-c---HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHH
Q 004713 6 REDIANTVRILVATDCHLGYMEK----DEIRRH-D---SFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77 (734)
Q Consensus 6 ~~~~~~~mRILh~SD~HLG~~e~----d~~R~~-D---s~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~ 77 (734)
+.....+||||.+||+|+|+... |..-.+ + -.+|-.-+=+....++||+||++||+..... ... +..
T Consensus 47 r~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~-t~D----a~~ 121 (379)
T KOG1432|consen 47 RFREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHS-TQD----AAT 121 (379)
T ss_pred eecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccc-cHh----HHH
Confidence 34567899999999999998622 111111 0 0122222223345699999999999987632 222 112
Q ss_pred HHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhh
Q 004713 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS 144 (734)
Q Consensus 78 lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~ 144 (734)
.|.+. ++ |-+..+||..++-||||+.+... .++++.
T Consensus 122 sl~kA----------------------va------P~I~~~IPwA~~lGNHDdes~lt---r~ql~~ 157 (379)
T KOG1432|consen 122 SLMKA----------------------VA------PAIDRKIPWAAVLGNHDDESDLT---RLQLMK 157 (379)
T ss_pred HHHHH----------------------hh------hHhhcCCCeEEEecccccccccC---HHHHHH
Confidence 22221 11 33467999999999999986543 444444
No 58
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=98.49 E-value=1e-05 Score=90.15 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=57.7
Q ss_pred CceEEEEEccCCCCCC---CcCccccccCC----cCCCEEEeCcccccccCCeecCCCCceEecCCCC--ccc-cc----
Q 004713 217 DWFNILVLHQNRVKTN---PKNAINEHFLP----RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS--VAT-SL---- 282 (734)
Q Consensus 217 ~~fnILvlHqn~~~~~---~~~~I~e~lLp----~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~--v~t-Sl---- 282 (734)
..+.|++.|+++...+ +...+...++| ..+|++++||.|.-+... .. +...+-+|+- ... ..
T Consensus 213 a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~--~~--gt~yIvSGaGs~~~~~~~~~~~ 288 (394)
T PTZ00422 213 ADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVLT--DE--GTAHINCGSGGNSGRKSIMKNS 288 (394)
T ss_pred CCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEec--CC--CceEEEeCccccccCCCCCCCC
Confidence 4589999999986432 22222222222 579999999999876541 12 2333333331 111 00
Q ss_pred -ccCccCCcEEEEEEEeCCceEEEEEECCCCCcEEEEEE
Q 004713 283 -IEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEI 320 (734)
Q Consensus 283 -~EgE~~~Kgv~LVeI~~~~~~~e~IpL~tvRpf~~~eI 320 (734)
..-.....|+..+++..+.+.++++--..-..+....+
T Consensus 289 ~s~F~~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~ 327 (394)
T PTZ00422 289 KSLFYSEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQ 327 (394)
T ss_pred CcceecCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeee
Confidence 00012457899999999999999985323344444444
No 59
>PLN02533 probable purple acid phosphatase
Probab=98.49 E-value=1.3e-06 Score=98.43 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Q 004713 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~ 65 (734)
...+||++++|+|.+.. . ...++.+.+.++||||++|||....
T Consensus 137 ~~~~~f~v~GDlG~~~~--~-----------~~tl~~i~~~~pD~vl~~GDl~y~~ 179 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEW--T-----------KSTLEHVSKWDYDVFILPGDLSYAN 179 (427)
T ss_pred CCCeEEEEEEeCCCCcc--c-----------HHHHHHHHhcCCCEEEEcCcccccc
Confidence 35799999999875421 1 1344455678999999999998754
No 60
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.47 E-value=3e-07 Score=91.28 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=53.4
Q ss_pred EEEcCCCCCCCCCch---------hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChh-HHHHHHHHHHHhccC
Q 004713 16 LVATDCHLGYMEKDE---------IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS-TLVKAIEILRRHCLN 85 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~---------~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~-tl~~~~~lLr~l~~g 85 (734)
|++||.||+....-+ .+.......++.+-..+.+.+||+|++.|||||...+... ......+.+++.
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~--- 77 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKI--- 77 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHH---
Confidence 568999999754321 1222222233344444568899999999999999876542 223333334332
Q ss_pred CCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 86 d~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
|...+ ....++|+++|+||||..
T Consensus 78 -------------------~~~~~----~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 78 -------------------FFLPS----NGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred -------------------hcccc----cccCCceEEEECCccccC
Confidence 10000 001368999999999975
No 61
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.45 E-value=5.1e-07 Score=85.40 Aligned_cols=33 Identities=33% Similarity=0.316 Sum_probs=23.1
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 004713 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF 62 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLF 62 (734)
|++||+| |... .++++.. ...++|+|+++||+.
T Consensus 1 ~viSDtH-~~~~-----------~~~~~~~--~~~~~d~ii~~GD~~ 33 (129)
T cd07403 1 LVISDTE-SPAL-----------YSPEIKV--RLEGVDLILSAGDLP 33 (129)
T ss_pred Ceecccc-Cccc-----------cchHHHh--hCCCCCEEEECCCCC
Confidence 5799999 5321 3344433 268999999999974
No 62
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.5e-06 Score=87.80 Aligned_cols=254 Identities=20% Similarity=0.317 Sum_probs=124.3
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCC
Q 004713 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (734)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~ 87 (734)
.++..++||++.||=.--... -+ +.-..+-+++.+.++||||-.||=|-.+-+.-.
T Consensus 39 ~~dgslsflvvGDwGr~g~~n------qs-~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~----------------- 94 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRGSFN------QS-QVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSE----------------- 94 (336)
T ss_pred CCCCceEEEEEcccccCCchh------HH-HHHHHHHhHHHhccceEEEecCCcccccCCCCC-----------------
Confidence 356789999999996321110 01 122345566789999999999996644432110
Q ss_pred CcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCc-chHHHHhhhCCceeeccceeecCC---Ccc
Q 004713 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN-LSAVDILSACNLVNYFGKMVLGGS---GVG 163 (734)
Q Consensus 88 p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~-lsaldiL~~~glVn~FGk~~l~~~---~~~ 163 (734)
-| -+|+..|..+ |.+|.++. |.|.|.||||....... +++ +|.....=-+|.+.-.... +.-
T Consensus 95 -------~D--p~Fq~sF~nI-YT~pSLQk--pWy~vlGNHDyrGnV~AQls~--~l~~~d~RW~c~rsf~~~ae~ve~f 160 (336)
T KOG2679|consen 95 -------ND--PRFQDSFENI-YTAPSLQK--PWYSVLGNHDYRGNVEAQLSP--VLRKIDKRWICPRSFYVDAEIVEMF 160 (336)
T ss_pred -------CC--hhHHhhhhhc-ccCccccc--chhhhccCccccCchhhhhhH--HHHhhccceecccHHhhcceeeeee
Confidence 01 1344455555 67776654 99999999998643221 221 2221111011111000000 000
Q ss_pred ceeEEEEE-----EeeCCeeEEEEecCCCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCC---CCCCcC
Q 004713 164 EITVYPIL-----IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRV---KTNPKN 235 (734)
Q Consensus 164 ~i~v~Pil-----l~kG~t~vaLyGL~~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~---~~~~~~ 235 (734)
.+.+.|.. +..+ .+|-..-.. .| ..+.+ ..+.|+.-...+ ....+.|++.|.++. .|++..
T Consensus 161 ~v~~~~f~~d~~~~~~~----~~ydw~~v~-PR-~~~~~--~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~~HG~T~ 229 (336)
T KOG2679|consen 161 FVDTTPFMDDTFTLCTD----DVYDWRGVL-PR-VKYLR--ALLSWLEVALKA---SRAKWKIVVGHHPIKSAGHHGPTK 229 (336)
T ss_pred ccccccchhhheecccc----cccccccCC-hH-HHHHH--HHHHHHHHHHHH---hhcceEEEecccceehhhccCChH
Confidence 00111111 0000 011111111 11 11111 123444333221 346789999999875 356766
Q ss_pred ccccccCC----cCCCEEEeCcccccccCCeecCCCCceEecCCCCcccc------cccCc----cCCcEEEEEEEeCCc
Q 004713 236 AINEHFLP----RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATS------LIEGE----SKPKHVLLLEIKENQ 301 (734)
Q Consensus 236 ~I~e~lLp----~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~tS------l~EgE----~~~Kgv~LVeI~~~~ 301 (734)
.+...++| .++|+.+.||-|.-|-......+-+|.+.-.||-.-.+ +.+++ -..+|+.-+++...+
T Consensus 230 eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~~~~~p~~lkF~YdgqGfmsv~is~~e 309 (336)
T KOG2679|consen 230 ELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHNPEVNPKELKFYYDGQGFMSVEISHSE 309 (336)
T ss_pred HHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccCCccChhheEEeeCCCceEEEEEecce
Confidence 66666665 58999999999975433110111122222223322111 11111 134588888888777
Q ss_pred eEEEEEECC
Q 004713 302 YRPTKIPLT 310 (734)
Q Consensus 302 ~~~e~IpL~ 310 (734)
.++.++...
T Consensus 310 ~~vvfyD~~ 318 (336)
T KOG2679|consen 310 ARVVFYDVS 318 (336)
T ss_pred eEEEEEecc
Confidence 777776653
No 63
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.38 E-value=4e-06 Score=88.59 Aligned_cols=57 Identities=28% Similarity=0.265 Sum_probs=35.9
Q ss_pred HhcCCCEEEEcCCCCCCCCCChhHH-HHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcC
Q 004713 48 EQKEVDFVLLGGDLFHENKPSRSTL-VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (734)
Q Consensus 48 ~e~~VD~VLiaGDLFd~~kPs~~tl-~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~G 126 (734)
...+||+||++|||||..+...... ....+.+++. |..+ ...+||++|+|
T Consensus 42 ~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i----------------------~~~~-------~~~~pv~~VpG 92 (257)
T cd08163 42 KQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRI----------------------FDPS-------PGRKMVESLPG 92 (257)
T ss_pred HhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHH----------------------hcCC-------CccceEEEeCC
Confidence 3468999999999999887643211 1112222221 1111 23589999999
Q ss_pred CCCCCCC
Q 004713 127 NHDDPAG 133 (734)
Q Consensus 127 NHD~p~g 133 (734)
|||.+.+
T Consensus 93 NHDig~~ 99 (257)
T cd08163 93 NHDIGFG 99 (257)
T ss_pred CcccCCC
Confidence 9998654
No 64
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.35 E-value=1.7e-05 Score=84.80 Aligned_cols=201 Identities=19% Similarity=0.269 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----C-CCEEEEcCCCCCCCCCChhH-HHHHHHHHHHhccCC
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E-VDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLND 86 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~-VD~VLiaGDLFd~~kPs~~t-l~~~~~lLr~l~~gd 86 (734)
++|||++|+|--....+.. .-.+..+..+++.++++ + --++|-+||+|.....+... -.-.+++|+
T Consensus 1 ltIl~tnD~Hg~l~~~~~~--~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n------ 72 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTG--EYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMN------ 72 (285)
T ss_pred CEEEEEcccccccccCCCC--CccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHH------
Confidence 5899999999765433211 11234445555555543 3 34888999999654222100 011122222
Q ss_pred CCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCcccee
Q 004713 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEIT 166 (734)
Q Consensus 87 ~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~ 166 (734)
..++-+.++ ||||.-.|...+. .++..+++ .+++.-..... +.-.
T Consensus 73 -----------------------------~~g~Da~~~-GNHEfD~G~~~L~--~~~~~~~f-p~l~aNv~~~~--g~~~ 117 (285)
T cd07405 73 -----------------------------LVGYDAMAV-GNHEFDNPLEVLR--QQMKWANF-PLLSANIYQES--GERL 117 (285)
T ss_pred -----------------------------hhCCcEEee-cccccccCHHHHH--HHHhhCCC-CEEEEEEEecC--CCCc
Confidence 124555555 9999887755432 22222221 11111000000 1111
Q ss_pred EEE-EEEeeCCeeEEEEecCCCChHHHH-h------hhcCh-hhHhhccchhhhhccCCCceEEEEEccCCCCCC-----
Q 004713 167 VYP-ILIRKGSTAVALYGLGNIRDERLN-R------MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN----- 232 (734)
Q Consensus 167 v~P-ill~kG~t~vaLyGL~~i~derL~-~------~f~~~-~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~----- 232 (734)
+.| +++..++.+|+|.|+-......+. . .|.++ ..++.+.++... ....+-|++.|.......
T Consensus 118 ~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~---~~~D~VI~lsH~G~~~~~~~~~~ 194 (285)
T cd07405 118 FKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQ---EKPDIVIAATHMGHYDNGEHGSN 194 (285)
T ss_pred cCCeEEEEECCEEEEEEEecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecccccCCcccccc
Confidence 334 344678899999998643211100 0 01110 001111111111 145688999998764221
Q ss_pred -CcC-ccccccCCcCCCEEEeCccccccc
Q 004713 233 -PKN-AINEHFLPRFLDFVVWGHEHECLI 259 (734)
Q Consensus 233 -~~~-~I~e~lLp~~~DyVa~GH~H~~~i 259 (734)
+.. .+...+...++|+|+.||.|....
T Consensus 195 ~~~~~~lA~~~~~~giD~IigGHsH~~~~ 223 (285)
T cd07405 195 APGDVEMARALPAGGLDLIVGGHSQDPVC 223 (285)
T ss_pred CchHHHHHHhcCCCCCCEEEeCCCCcccc
Confidence 000 111222235799999999999763
No 65
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.34 E-value=4.9e-06 Score=104.29 Aligned_cols=208 Identities=19% Similarity=0.218 Sum_probs=107.8
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChhH-HHHHHHHHHHhccCC
Q 004713 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRRHCLND 86 (734)
Q Consensus 9 ~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLi-aGDLFd~~kPs~~t-l~~~~~lLr~l~~gd 86 (734)
+...++|||++|+| |... .+..+..+++..++.++|.|++ +||+|+....+... ....+++|+.
T Consensus 657 ~~~~l~Il~~nD~H-g~l~--------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~----- 722 (1163)
T PRK09419 657 DNWELTILHTNDFH-GHLD--------GAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKE----- 722 (1163)
T ss_pred CceEEEEEEEeecc-cCCC--------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhC-----
Confidence 33459999999999 4331 2445777788888889999988 99999876222100 0122233321
Q ss_pred CCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCC------------c----ee
Q 004713 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN------------L----VN 150 (734)
Q Consensus 87 ~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~g------------l----Vn 150 (734)
.++ -+++.||||...+...+ ...+...+ + -|
T Consensus 723 ------------------------------lg~-d~~~~GNHEfd~g~~~l--~~~l~~~~~~~~~~~~~~~~fp~l~aN 769 (1163)
T PRK09419 723 ------------------------------MGY-DASTFGNHEFDWGPDVL--PDWLKGGGDPKNRHQFEKPDFPFVASN 769 (1163)
T ss_pred ------------------------------cCC-CEEEecccccccChHHH--HHHHHhcccccccccccCCCCCEEEEE
Confidence 122 25589999987665432 23444333 1 12
Q ss_pred eccceeecCCCccce-eEEEE-EEeeCCeeEEEEecCCCC------hHHHH-hhhcCh-hhHhhccchhhhhccCCCceE
Q 004713 151 YFGKMVLGGSGVGEI-TVYPI-LIRKGSTAVALYGLGNIR------DERLN-RMFQTP-HAVQWMRPEAQEECQVSDWFN 220 (734)
Q Consensus 151 ~FGk~~l~~~~~~~i-~v~Pi-ll~kG~t~vaLyGL~~i~------derL~-~~f~~~-~~v~~l~p~~~~~~~~~~~fn 220 (734)
++... .+ ... .+.|. ++..++.+|+|.|+-... ...+. -.|.++ ..++...++... ...-.+-
T Consensus 770 v~~~~----~~-~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~--~~~~D~V 842 (1163)
T PRK09419 770 IYVKK----TG-KLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKE--KEKVDAI 842 (1163)
T ss_pred EEeCC----CC-ccccccCCEEEEEECCEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHh--hcCCCEE
Confidence 22110 00 001 12343 346788999999984321 00000 011111 001111111110 0135678
Q ss_pred EEEEccCCCCCCC--cC---ccccccCCcCCCEEEeCcccccccCCeecCCCCceEecCCC
Q 004713 221 ILVLHQNRVKTNP--KN---AINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (734)
Q Consensus 221 ILvlHqn~~~~~~--~~---~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS 276 (734)
|++.|........ .. .+. .-++ ++|+|+.||.|..... .+ .+..|+++|+
T Consensus 843 V~LsH~G~~~d~~~~~~~~~~lA-~~v~-gIDvIigGHsH~~~~~--~v--~~~~ivqag~ 897 (1163)
T PRK09419 843 IALTHLGSNQDRTTGEITGLELA-KKVK-GVDAIISAHTHTLVDK--VV--NGTPVVQAYK 897 (1163)
T ss_pred EEEecCCccccccccccHHHHHH-HhCC-CCCEEEeCCCCccccc--cC--CCEEEEeCCh
Confidence 9999987543210 00 011 1123 5999999999987542 22 3467888876
No 66
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.29 E-value=2.2e-05 Score=79.90 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=21.5
Q ss_pred HHHHHHH-HhcCCCEEEEcCCCCCCCCCChh
Q 004713 41 EEICSIA-EQKEVDFVLLGGDLFHENKPSRS 70 (734)
Q Consensus 41 eeIl~~A-~e~~VD~VLiaGDLFd~~kPs~~ 70 (734)
..+.+.+ .-.+||.|++.||||++.+-+-+
T Consensus 33 ~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ 63 (193)
T cd08164 33 GHIVSMMQFWLKPDAVVVLGDLFSSQWIDDE 63 (193)
T ss_pred HHHHHHHHHhcCCCEEEEeccccCCCcccHH
Confidence 3444443 34799999999999998765443
No 67
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.26 E-value=2e-06 Score=89.47 Aligned_cols=57 Identities=32% Similarity=0.313 Sum_probs=39.7
Q ss_pred ceEEEEEcCCCCCCCCCchhchhc----HHHHHHHHHH-HHHhcCCCEEEEcCCCCCCCCCC
Q 004713 12 TVRILVATDCHLGYMEKDEIRRHD----SFEAFEEICS-IAEQKEVDFVLLGGDLFHENKPS 68 (734)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~~D----s~~aFeeIl~-~A~e~~VD~VLiaGDLFd~~kPs 68 (734)
.-+.|++||+||||...-..++.- ....+..+++ ++..++|+.|++.||++|.-.++
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~ 80 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKS 80 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCcc
Confidence 357899999999986532111111 1233344444 77889999999999999998775
No 68
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=98.15 E-value=6.4e-06 Score=87.65 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCC
Q 004713 35 DSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPS 68 (734)
Q Consensus 35 Ds~~aFeeIl~~A~e~--~VD~VLiaGDLFd~~kPs 68 (734)
-.+..++.+++.+.+. ++||||++||+.+.....
T Consensus 50 ~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~ 85 (296)
T cd00842 50 SPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDE 85 (296)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchh
Confidence 3478999999999988 999999999999876543
No 69
>PHA02239 putative protein phosphatase
Probab=98.09 E-value=9.1e-06 Score=84.87 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChhHHHHHHH
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIE 77 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--~VD~VLiaGDLFd~~kPs~~tl~~~~~ 77 (734)
|||+++||+|.. +..|+++++.+... ..|.|++.||++|....+..++...++
T Consensus 1 m~~~~IsDIHG~------------~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIHGE------------YQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD 55 (235)
T ss_pred CeEEEEECCCCC------------HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH
Confidence 699999999943 35678888877543 369999999999988666654444433
No 70
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.05 E-value=0.0003 Score=81.15 Aligned_cols=237 Identities=19% Similarity=0.219 Sum_probs=117.3
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCchhch---hcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChh--HHHHHHHHH
Q 004713 6 REDIANTVRILVATDCHLGYMEKDEIRR---HDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRS--TLVKAIEIL 79 (734)
Q Consensus 6 ~~~~~~~mRILh~SD~HLG~~e~d~~R~---~Ds~~aFeeIl~~A~e~~V-D~VLiaGDLFd~~kPs~~--tl~~~~~lL 79 (734)
.....-.++|||++|+|-.....+..-. .-.+...-.+++..+++.. -++|.+||+|+.+.++.. -....+++|
T Consensus 20 ~~~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~m 99 (517)
T COG0737 20 AAAETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLL 99 (517)
T ss_pred cccCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHH
Confidence 3345667999999999987652221111 1234444455555555544 678999999998655432 012233333
Q ss_pred HHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCc----eeeccce
Q 004713 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKM 155 (734)
Q Consensus 80 r~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~gl----Vn~FGk~ 155 (734)
..+ +.- ++.-|||+--.+...+. ..+....+ -|++...
T Consensus 100 N~m-----------------------------------~yD-a~tiGNHEFd~g~~~l~--~~~~~~~fp~l~aNv~~~~ 141 (517)
T COG0737 100 NAL-----------------------------------GYD-AMTLGNHEFDYGLEALA--RLLDEAKFPVLSANVYDKN 141 (517)
T ss_pred hhc-----------------------------------CCc-EEeecccccccCHHHHH--HHHhccCCceEEeeeEecC
Confidence 321 222 45667999887754322 22332221 1222210
Q ss_pred eecCCCccceeEEEE-EEeeCCeeEEEEecCC--CCh-HHHH----hhhcCh-hhHhhccchhhhhccCCCceEEEEEcc
Q 004713 156 VLGGSGVGEITVYPI-LIRKGSTAVALYGLGN--IRD-ERLN----RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQ 226 (734)
Q Consensus 156 ~l~~~~~~~i~v~Pi-ll~kG~t~vaLyGL~~--i~d-erL~----~~f~~~-~~v~~l~p~~~~~~~~~~~fnILvlHq 226 (734)
.....-+.|. ++..++.+|++.|+-. +.- +... -.|.++ ..++...++... ..-..-|++.|.
T Consensus 142 -----~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~---~~vD~iI~LsH~ 213 (517)
T COG0737 142 -----STGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKG---EGVDVIIALSHL 213 (517)
T ss_pred -----CCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHh---cCCCEEEEEecc
Confidence 0111122343 3467889999999862 211 0000 011111 011111122211 114688999998
Q ss_pred CCCCCCCcC-cccc--ccCCcCCCEEEeCcccccccCCeec-CCCCceEecCCCCcccccccCccCCcEEEEEEEeC
Q 004713 227 NRVKTNPKN-AINE--HFLPRFLDFVVWGHEHECLIDPQEV-PGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKE 299 (734)
Q Consensus 227 n~~~~~~~~-~I~e--~lLp~~~DyVa~GH~H~~~i~Pq~~-~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~ 299 (734)
....-.... ..+. ......+|+++.||.|.-...+... ...+..++|+|+- -|.++.|+|.-
T Consensus 214 G~~~d~~~~~~~~~~~~~~~~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~~-----------gk~vG~~di~~ 279 (517)
T COG0737 214 GIEDDLELASEVPGDVDVAVPGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGEY-----------GKYVGVLDITF 279 (517)
T ss_pred CcCccccccccccccccccccCcceEeccCCcccccCCcccCccCCEEEEccChh-----------hCceeEEEEEE
Confidence 765321100 0000 0111239999999999654332210 1124567777653 45677777754
No 71
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.00 E-value=0.00034 Score=83.06 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 004713 10 ANTVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~----~R~~Ds~~aFeeIl~~A~e~~V-D~VLiaGDLFd~~ 65 (734)
.-.++|||++|+|--...++. ....-.+..+-.+++.++++.. -++|-+||+|..+
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGs 83 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGS 83 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCc
Confidence 457999999999976543321 1111134556667777776554 3778899999865
No 72
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.97 E-value=0.00011 Score=78.86 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=33.5
Q ss_pred CCceEEEEEccCCCCCCCc----CccccccCCcCCC-EEEeCcccccccCCeecCCCCceEecCCCC
Q 004713 216 SDWFNILVLHQNRVKTNPK----NAINEHFLPRFLD-FVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (734)
Q Consensus 216 ~~~fnILvlHqn~~~~~~~----~~I~e~lLp~~~D-yVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~ 277 (734)
.-.+-|++.|......... ..+. ..+| .+| +++.||.|..... ... .+..++|||+-
T Consensus 187 ~~DvIIvlsH~G~~~d~~~~~~~~~la-~~~~-~id~~Ii~GHsH~~~~~--~~~-~~~~ivq~G~~ 248 (282)
T cd07407 187 DVDLILVLGHMPVRDDAEFKVLHDAIR-KIFP-DTPIQFLGGHSHVRDFT--QYD-SSSTGLESGRY 248 (282)
T ss_pred CCCEEEEEeCCCCCCCccHHHHHHHHH-HhCC-CCCEEEEeCCcccccce--ecc-CcEEEEeccch
Confidence 3567899999986532110 0111 1234 366 7999999976432 222 24678888864
No 73
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.96 E-value=0.00012 Score=77.90 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.3
Q ss_pred CCCCcEEEEcCCCCCCC
Q 004713 116 NVGLPVFSIHGNHDDPA 132 (734)
Q Consensus 116 n~~IPVf~I~GNHD~p~ 132 (734)
.+.+|+++|.||||.+.
T Consensus 71 ~~p~~t~fi~GNHE~~~ 87 (262)
T cd00844 71 KAPILTIFIGGNHEASN 87 (262)
T ss_pred cCCeeEEEECCCCCCHH
Confidence 46889999999999753
No 74
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.94 E-value=0.00026 Score=85.40 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 004713 10 ANTVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~----~R~~Ds~~aFeeIl~~A~e~~V-D~VLiaGDLFd~~ 65 (734)
.-.++|||++|+|--...++. ....-.+..+-.+++.++++.. -++|.+||+|..+
T Consensus 37 ~~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGs 97 (780)
T PRK09418 37 TVNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGT 97 (780)
T ss_pred ceEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCc
Confidence 346999999999977544321 1011134555666777766554 3788999999875
No 75
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.91 E-value=0.00011 Score=85.38 Aligned_cols=206 Identities=18% Similarity=0.262 Sum_probs=99.2
Q ss_pred CCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----C-CCEEEEcCCCCCCCCCChhHHH---HHHHH
Q 004713 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E-VDFVLLGGDLFHENKPSRSTLV---KAIEI 78 (734)
Q Consensus 7 ~~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~-VD~VLiaGDLFd~~kPs~~tl~---~~~~l 78 (734)
....-.+.|||++|+|--+...+. ..-.+..+..+++..+++ + --++|.+||+|... | ...+. ..+++
T Consensus 29 ~~~~~~ltil~tnD~Hg~~~~~~~--~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs-~-~s~~~~g~~~i~~ 104 (551)
T PRK09558 29 KDKTYKITILHTNDHHGHFWRNEY--GEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGV-P-ESDLQDAEPDFRG 104 (551)
T ss_pred cCCceEEEEEEecccCCCcccccc--CCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccce-E-hhhhcCCchhHHH
Confidence 344567999999999976543211 011355555666655532 3 34788999999865 2 11111 11222
Q ss_pred HHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeec
Q 004713 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLG 158 (734)
Q Consensus 79 Lr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~ 158 (734)
|+ ..++-+.+ .||||.-.|...+. .++..+.+ .++..-...
T Consensus 105 mN-----------------------------------~~g~Da~t-lGNHEFD~G~~~L~--~~~~~a~f-p~l~aNv~~ 145 (551)
T PRK09558 105 MN-----------------------------------LIGYDAMA-VGNHEFDNPLSVLR--KQEKWAKF-PFLSANIYQ 145 (551)
T ss_pred Hh-----------------------------------cCCCCEEc-ccccccCcCHHHHH--HhhccCCC-CEEEEEEEE
Confidence 22 23455555 49999887754332 22332222 111110000
Q ss_pred CCCccceeEEEEE-EeeCCeeEEEEecCCCChHHH------Hh-hhcCh-hhHhhccchhhhhccCCCceEEEEEccCCC
Q 004713 159 GSGVGEITVYPIL-IRKGSTAVALYGLGNIRDERL------NR-MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (734)
Q Consensus 159 ~~~~~~i~v~Pil-l~kG~t~vaLyGL~~i~derL------~~-~f~~~-~~v~~l~p~~~~~~~~~~~fnILvlHqn~~ 229 (734)
...+.-.+.|.. ++.++.+|++.|+-......+ .. .|.++ ..++.+.++... ...-.+-|++.|....
T Consensus 146 -~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~--~~~~D~IV~LsH~G~~ 222 (551)
T PRK09558 146 -KSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQ--TEKPDVIIALTHMGHY 222 (551)
T ss_pred -CCCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHh--ccCCCEEEEEeccccc
Confidence 000111134433 467889999999853211110 00 11111 001111111110 0235678999998764
Q ss_pred CCCC-cCccc-----cccCC-cCCCEEEeCcccccc
Q 004713 230 KTNP-KNAIN-----EHFLP-RFLDFVVWGHEHECL 258 (734)
Q Consensus 230 ~~~~-~~~I~-----e~lLp-~~~DyVa~GH~H~~~ 258 (734)
.... ....+ ..-++ .++|+|+.||.|...
T Consensus 223 ~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 223 DDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred cCCccCCCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 2210 00011 11123 479999999999854
No 76
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.91 E-value=9.2e-05 Score=83.52 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=38.3
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHH--HhcCCCEEEEcCCCCCC
Q 004713 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIA--EQKEVDFVLLGGDLFHE 64 (734)
Q Consensus 6 ~~~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A--~e~~VD~VLiaGDLFd~ 64 (734)
.....+.++.++++|+|.|..+. ..+.|..|-+.+..- ...+|-++++|||+.|.
T Consensus 219 ~~~~~e~v~v~~isDih~GSk~F----~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDG 275 (481)
T COG1311 219 NNTGDERVYVALISDIHRGSKEF----LEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDG 275 (481)
T ss_pred CCCCCcceEEEEEeeeecccHHH----HHHHHHHHHHHhcCCcccccceEEEEEecccccc
Confidence 33456778999999999998754 234455553333222 35678999999999995
No 77
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.90 E-value=0.00026 Score=83.74 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 004713 12 TVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (734)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~----~R~~Ds~~aFeeIl~~A~e~~V-D~VLiaGDLFd~~ 65 (734)
.++|||++|+|--...++. ....-.+..+-.+++.++++.. -++|-+||+|..+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGs 60 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGS 60 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 4899999999976544321 0011134556666777765543 4778899999875
No 78
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.89 E-value=3.6e-05 Score=78.40 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=38.9
Q ss_pred HHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcC
Q 004713 47 AEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (734)
Q Consensus 47 A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~G 126 (734)
....+||+|+++|||||....+. ..+..+.++++. +-|. ...++|+++|+|
T Consensus 38 ~~~l~PD~Vi~lGDL~D~G~~~~--~~e~~e~l~Rf~-------------------~If~--------~~~~~~~~~VpG 88 (195)
T cd08166 38 LNFVQPDIVIFLGDLMDEGSIAN--DDEYYSYVQRFI-------------------NIFE--------VPNGTKIIYLPG 88 (195)
T ss_pred HhccCCCEEEEeccccCCCCCCC--HHHHHHHHHHHH-------------------HHhc--------CCCCCcEEEECC
Confidence 35569999999999999986543 234555555542 1121 134799999999
Q ss_pred CCCCC
Q 004713 127 NHDDP 131 (734)
Q Consensus 127 NHD~p 131 (734)
|||..
T Consensus 89 NHDIG 93 (195)
T cd08166 89 DNDIG 93 (195)
T ss_pred CCCcC
Confidence 99964
No 79
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.89 E-value=0.00021 Score=77.66 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----C-CCEEEEcCCCCCCC
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E-VDFVLLGGDLFHEN 65 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~-VD~VLiaGDLFd~~ 65 (734)
++|||++|+|-.+.... .+..+..+++..+++ . --++|.+||+|...
T Consensus 1 l~IlhtnD~Hg~~~~~g------g~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs 52 (313)
T cd08162 1 LQLLHTSDGESGLLAED------DAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPG 52 (313)
T ss_pred CeEEEecccccCccccC------CHHHHHHHHHHHHHhhhccCCCeEEEecCccccCc
Confidence 57999999997654221 133444445544432 2 34889999999864
No 80
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.88 E-value=0.00032 Score=88.28 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCCCCCCCchh----chhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCC
Q 004713 11 NTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHEN 65 (734)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~----R~~Ds~~aFeeIl~~A~e~~VD~VLi-aGDLFd~~ 65 (734)
..++|||++|+|-....++.. ...-.+..+..+++.++++.++.||+ +||+|..+
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs 99 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGN 99 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCC
Confidence 469999999999765433210 01113566778888888888887777 99999876
No 81
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.83 E-value=3.3e-05 Score=82.57 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~ 91 (734)
|++++++|+|-. +.+|+.+++.+. ..++|.|+++|||++...-|. .++++|.++
T Consensus 1 M~~~vIGDIHG~------------~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~----~vl~~l~~l--------- 55 (275)
T PRK00166 1 MATYAIGDIQGC------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSL----EVLRFVKSL--------- 55 (275)
T ss_pred CcEEEEEccCCC------------HHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHH----HHHHHHHhc---------
Confidence 689999999966 557888888764 357999999999999874443 355555432
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 92 e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
+.+|++|.||||..
T Consensus 56 --------------------------~~~~~~VlGNHD~~ 69 (275)
T PRK00166 56 --------------------------GDSAVTVLGNHDLH 69 (275)
T ss_pred --------------------------CCCeEEEecChhHH
Confidence 35789999999973
No 82
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.80 E-value=4.4e-05 Score=78.18 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=51.7
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH--------hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCC
Q 004713 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--------QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~--------e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~ 87 (734)
++++|+|-. +.+|+++++.+. ..+.|.|++.||++|...-+.. ++++|.++..
T Consensus 1 ~vi~DIHG~------------~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~----vl~~l~~l~~--- 61 (208)
T cd07425 1 VAIGDLHGD------------LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIE----ILWLLYKLEQ--- 61 (208)
T ss_pred CEEeCccCC------------HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHH----HHHHHHHHHH---
Confidence 478999987 568999998764 4579999999999998754544 4444444310
Q ss_pred CcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 88 p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
. . ...+.+|++|.||||..
T Consensus 62 ----------------~---~------~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 62 ----------------E---A------AKAGGKVHFLLGNHELM 80 (208)
T ss_pred ----------------H---H------HhcCCeEEEeeCCCcHH
Confidence 0 0 13468999999999974
No 83
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.78 E-value=0.0014 Score=79.36 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=36.3
Q ss_pred CCceEEEEEcCCCCCCCCCchh--c--hhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCC
Q 004713 10 ANTVRILVATDCHLGYMEKDEI--R--RHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~--R--~~Ds~~aFeeIl~~A~e~~VD-~VLiaGDLFd~~ 65 (734)
.-.++|||++|+|--...++.. . ..-.+..+-.+++.++++... ++|.+||+|..+
T Consensus 113 ~~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGS 173 (814)
T PRK11907 113 TVDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGT 173 (814)
T ss_pred ceEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 3468999999999764433210 0 111344556667777665543 688899999875
No 84
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.78 E-value=0.00041 Score=80.87 Aligned_cols=195 Identities=20% Similarity=0.190 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCCCCCCchh----c-----hhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChhHHHH---HHHHH
Q 004713 13 VRILVATDCHLGYMEKDEI----R-----RHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLVK---AIEIL 79 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~----R-----~~Ds~~aFeeIl~~A~e~~V-D~VLiaGDLFd~~kPs~~tl~~---~~~lL 79 (734)
++|||++|+|--....+.. . ..-.+..+..+++..+++.+ -++|.+||.|...-- ..+.. .+++|
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~--~~~~~g~~~i~~~ 78 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLY--FTLFGGRADAALM 78 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccc--hhhcCCHHHHHHH
Confidence 5799999999654322110 0 01135666777777765554 477899999976421 11111 12222
Q ss_pred HHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCc----eeeccce
Q 004713 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKM 155 (734)
Q Consensus 80 r~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~gl----Vn~FGk~ 155 (734)
.. --.-++..||||.-.|...+. .++...++ .|++-..
T Consensus 79 N~------------------------------------~g~Da~~lGNHEFd~G~~~l~--~~~~~~~fp~l~aNv~~~~ 120 (550)
T TIGR01530 79 NA------------------------------------AGFDFFTLGNHEFDAGNEGLK--EFLEPLEIPVLSANVIPDA 120 (550)
T ss_pred hc------------------------------------cCCCEEEeccccccCCHHHHH--HHHHhCCCCEEEEeeecCC
Confidence 11 112367889999877654332 23333332 1222110
Q ss_pred eecCCCccceeEEE-EEEeeCCeeEEEEecCCCCh--HHH----HhhhcCh-hhHhhccchhhhhccCCCceEEEEEccC
Q 004713 156 VLGGSGVGEITVYP-ILIRKGSTAVALYGLGNIRD--ERL----NRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQN 227 (734)
Q Consensus 156 ~l~~~~~~~i~v~P-ill~kG~t~vaLyGL~~i~d--erL----~~~f~~~-~~v~~l~p~~~~~~~~~~~fnILvlHqn 227 (734)
..... -.+.| +++..++.+|+|.|+-.... ... .-.|.++ ..++...+.... ..-.+-|++.|..
T Consensus 121 ---~~~~~-~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~---~g~D~II~lsH~g 193 (550)
T TIGR01530 121 ---ASILH-GKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQ---QGINKIILLSHAG 193 (550)
T ss_pred ---Ccccc-cCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHh---CCCCEEEEEecCC
Confidence 00000 01234 33467889999999942110 000 0011111 001111111110 1235779999986
Q ss_pred CCCCCCcCccccccCCcCCCEEEeCccccccc
Q 004713 228 RVKTNPKNAINEHFLPRFLDFVVWGHEHECLI 259 (734)
Q Consensus 228 ~~~~~~~~~I~e~lLp~~~DyVa~GH~H~~~i 259 (734)
.... ..+.+ -++ ++|+|+.||.|....
T Consensus 194 ~~~d---~~la~-~~~-~iD~IigGHsH~~~~ 220 (550)
T TIGR01530 194 FEKN---CEIAQ-KIN-DIDVIVSGDSHYLLG 220 (550)
T ss_pred cHHH---HHHHh-cCC-CCCEEEeCCCCcccc
Confidence 4210 01111 222 699999999999653
No 85
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.76 E-value=0.0011 Score=70.26 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-----------hcCCCEEEEcCCCCCCCC
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----------QKEVDFVLLGGDLFHENK 66 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-----------e~~VD~VLiaGDLFd~~k 66 (734)
+|+++||+|+|..... ...++.| ++... ..++-.||+|||+++...
T Consensus 1 ~i~~vSgL~ig~~~~~----~~~l~ll---~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~ 57 (257)
T cd07387 1 YIALVSGLGLGGNAES----SLSLQLL---VDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKST 57 (257)
T ss_pred CEEEEcccccCCCccc----hHHHHHH---HHHhcCCCCCccccccccceEEEEEECCcccccc
Confidence 4899999999976432 1233333 33332 235668999999998653
No 86
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.75 E-value=0.00032 Score=68.87 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----CCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004713 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (734)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~ 81 (734)
.|-.|-++||+|+|...--..+..+.+.-|++++ +++=+ .=|.|.+.|||--..+... .+..+|.+
T Consensus 2 sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vi-l~N~nntv~p~D~lwhLGDl~~~~n~~~----~a~~Iler 71 (186)
T COG4186 2 SMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVI-LSNWNNTVGPDDVLWHLGDLSSGANRER----AAGLILER 71 (186)
T ss_pred ceeEEEEecccccCCcceeecCCCCCHHHHhHHH-HHhHHhcCCccceEEEecccccccchhh----HHHHHHHH
Confidence 4667899999999976432233444455566554 22222 3489999999975544322 24455554
No 87
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.66 E-value=0.00025 Score=79.21 Aligned_cols=99 Identities=23% Similarity=0.323 Sum_probs=61.1
Q ss_pred CCCCCCCceEEEEEcCCCCCCCCCch-------hchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCC-CChhHHHHH
Q 004713 5 PREDIANTVRILVATDCHLGYMEKDE-------IRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENK-PSRSTLVKA 75 (734)
Q Consensus 5 ~~~~~~~~mRILh~SD~HLG~~e~d~-------~R~~Ds~~aFeeIl~~A~-e~~VD~VLiaGDLFd~~k-Ps~~tl~~~ 75 (734)
+..+.++.+||+.+||.||==.-..+ .-+.|.+ +....+.+. -.+||+|++.|||||+.+ -..+...+-
T Consensus 41 ~~~~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~--lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~ 118 (410)
T KOG3662|consen 41 QWASNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWY--LRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKR 118 (410)
T ss_pred cccCCCCceEEEEecCchhcCCCCCccccchHHhhhhHHH--HHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHH
Confidence 34455789999999999973211111 1122222 344444443 479999999999999653 444443333
Q ss_pred HHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCC
Q 004713 76 IEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVD 135 (734)
Q Consensus 76 ~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~ 135 (734)
.+-|++. |+ .+-.+|++.|+||||-..+..
T Consensus 119 ~~RfkkI----------------------f~--------~k~~~~~~~i~GNhDIGf~~~ 148 (410)
T KOG3662|consen 119 YERFKKI----------------------FG--------RKGNIKVIYIAGNHDIGFGNE 148 (410)
T ss_pred HHHHHHh----------------------hC--------CCCCCeeEEeCCccccccccc
Confidence 3334432 22 135799999999999876643
No 88
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.58 E-value=0.00013 Score=74.23 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCCC
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPS 68 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e-~~VD~VLiaGDLFd~~kPs 68 (734)
.||+++||+|-- +.+|+++++.+.. .++|.|+++||+++....+
T Consensus 1 ~ri~~isDiHg~------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~ 45 (207)
T cd07424 1 GRDFVVGDIHGH------------YSLLQKALDAVGFDPARDRLISVGDLIDRGPES 45 (207)
T ss_pred CCEEEEECCCCC------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH
Confidence 379999999933 4578888887753 4799999999999976433
No 89
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.57 E-value=0.00012 Score=75.79 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH----h------cCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE----Q------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~----e------~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~ 81 (734)
|||++++|+|-. +.+|+.+++.+. + .++|.+++.|||+|...-+.. ++++|+.
T Consensus 1 ~~i~vigDIHG~------------~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~e----vl~~l~~ 63 (234)
T cd07423 1 GPFDIIGDVHGC------------YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPE----VLRLVMS 63 (234)
T ss_pred CCeEEEEECCCC------------HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHH----HHHHHHH
Confidence 689999999987 457888888762 1 147999999999998755554 4455554
No 90
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.45 E-value=0.0002 Score=72.72 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=50.9
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeec
Q 004713 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVS 95 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lS 95 (734)
.+++|+|-. +..|..+++.+.....|.+|+.||++|...++.. +++.|..+.
T Consensus 1 ~~igDiHg~------------~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~----~l~~l~~~~------------ 52 (225)
T cd00144 1 YVIGDIHGC------------LDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVE----VIDLLLALK------------ 52 (225)
T ss_pred CEEeCCCCC------------HHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHH----HHHHHHHhc------------
Confidence 368999944 4578888888877789999999999999877654 444444321
Q ss_pred hhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 96 DQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 96 d~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
.. ..+|++|.||||..
T Consensus 53 -------------------~~-~~~~~~l~GNHe~~ 68 (225)
T cd00144 53 -------------------IL-PDNVILLRGNHEDM 68 (225)
T ss_pred -------------------CC-CCcEEEEccCchhh
Confidence 01 45799999999975
No 91
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=97.44 E-value=0.0024 Score=73.02 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=61.9
Q ss_pred hhHhhccchhhhhccCCCceEEEEEccCCCCCCC--cCc------c--cc---ccCCc--CCCEEEeCcccccccCCee-
Q 004713 200 HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP--KNA------I--NE---HFLPR--FLDFVVWGHEHECLIDPQE- 263 (734)
Q Consensus 200 ~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~--~~~------I--~e---~lLp~--~~DyVa~GH~H~~~i~Pq~- 263 (734)
..+.|+...... ..+...|+++|++...... .++ . .+ ++|.. .+-+|++||+|...+.+..
T Consensus 323 eQL~WLeqeLa~---a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~ 399 (496)
T TIGR03767 323 TQFKWIKDTLRA---SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRR 399 (496)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccC
Confidence 456777655432 2345689999997542211 000 0 01 22222 5788999999987764322
Q ss_pred ----cCCCCceEecCCCCcccccccCccCCcEEEEEEEeC---CceEEEEEECCCCCcE
Q 004713 264 ----VPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKE---NQYRPTKIPLTSVRPF 315 (734)
Q Consensus 264 ----~~~~~~~I~yPGS~v~tSl~EgE~~~Kgv~LVeI~~---~~~~~e~IpL~tvRpf 315 (734)
.++.+||-+..+|.+ ..|..+-+++|.. +.+.+.-.-+.+.-|.
T Consensus 400 ~~~~~p~~gfweI~TaSlv--------dfPq~~Ri~Ei~~n~dgt~si~tt~vd~~~~~ 450 (496)
T TIGR03767 400 VEGVGKDKGFWEINTASHI--------DFPQQGRIIELADNQDGTVSIFTTLIESAAPY 450 (496)
T ss_pred CCCCCCcCCeEEEeccccc--------cCCCCceEEEEEeCCCCcEEEEEEecccCCCc
Confidence 133578888888875 3577888999854 3456555555554444
No 92
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.28 E-value=0.00045 Score=73.25 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=50.1
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceee
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQV 93 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e-~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~ 93 (734)
+.+++|+|-. +.+|+++++.+.- .+.|.++++||+++...-|.+ ++++|.++
T Consensus 1 ~yvIGDIHG~------------~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~e----vl~~l~~l----------- 53 (257)
T cd07422 1 TYAIGDIQGC------------YDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLE----TLRFVKSL----------- 53 (257)
T ss_pred CEEEECCCCC------------HHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHH----HHHHHHhc-----------
Confidence 3689999977 5578999988753 478999999999998854543 55555542
Q ss_pred echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 94 VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 94 lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
+..+++|.||||..
T Consensus 54 ------------------------~~~v~~VlGNHD~~ 67 (257)
T cd07422 54 ------------------------GDSAKTVLGNHDLH 67 (257)
T ss_pred ------------------------CCCeEEEcCCchHH
Confidence 24688999999974
No 93
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.26 E-value=0.00039 Score=71.46 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCChhHHHHHHHHHH
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVKAIEILR 80 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~-~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr 80 (734)
.||.+++|+|-. +.+|+++++.+... +.|.|++.|||.|...-|.. ++++|+
T Consensus 17 ~ri~vigDIHG~------------~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~----vl~~l~ 69 (218)
T PRK11439 17 RHIWLVGDIHGC------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR----CLQLLE 69 (218)
T ss_pred CeEEEEEcccCC------------HHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHH----HHHHHH
Confidence 499999999987 45788998887544 78999999999998855543 445553
No 94
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.22 E-value=0.00063 Score=71.32 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh---------cCCCEEEEcCCCCCCCCCChhHHHHH
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ---------KEVDFVLLGGDLFHENKPSRSTLVKA 75 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e---------~~VD~VLiaGDLFd~~kPs~~tl~~~ 75 (734)
||+.+++|+|-- +..|+++++.+.- ..-|.+++.|||.|...-|..++..+
T Consensus 1 ~~~~vIGDIHG~------------~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~ 60 (245)
T PRK13625 1 MKYDIIGDIHGC------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIV 60 (245)
T ss_pred CceEEEEECccC------------HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHH
Confidence 789999999954 4578888876432 13579999999999886666544433
No 95
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.21 E-value=0.00056 Score=70.54 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCCh
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSR 69 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLiaGDLFd~~kPs~ 69 (734)
||+++||+|-- +.+|+++++.+. ..++|.|++.||+.+...-+.
T Consensus 16 ri~visDiHg~------------~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~ 60 (218)
T PRK09968 16 HIWVVGDIHGE------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPESL 60 (218)
T ss_pred eEEEEEeccCC------------HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHH
Confidence 99999999965 557888888765 468999999999999874443
No 96
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.0053 Score=69.43 Aligned_cols=80 Identities=16% Similarity=-0.046 Sum_probs=48.7
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCC
Q 004713 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (734)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~ 87 (734)
.+....++.++.|+=..+... ++...... ..++|+|||.|||-....-....-...++.++-+
T Consensus 143 ~~~~~~~~~i~GDlG~~~~~~----------s~~~~~~~--~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~----- 205 (452)
T KOG1378|consen 143 GQDSPTRAAIFGDMGCTEPYT----------STLRNQEE--NLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPI----- 205 (452)
T ss_pred CccCceeEEEEcccccccccc----------chHhHHhc--ccCCcEEEEecchhhcCCCCccchHHHHhhhhhh-----
Confidence 345779999999987765432 12222211 1279999999999644322211222333333321
Q ss_pred CcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004713 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (734)
Q Consensus 88 p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~ 132 (734)
.+-+|..++.|||+.-.
T Consensus 206 ----------------------------As~vPymv~~GNHE~d~ 222 (452)
T KOG1378|consen 206 ----------------------------ASYVPYMVCSGNHEIDW 222 (452)
T ss_pred ----------------------------hccCceEEecccccccC
Confidence 35789999999999754
No 97
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.93 E-value=0.0016 Score=69.81 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~ 81 (734)
|++.+++|+|-- +.+|+++++.+. ....|.+++.|||++...-|.. ++++++.
T Consensus 1 m~~YvIGDIHGc------------~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sle----vL~~l~~ 54 (279)
T TIGR00668 1 MATYLIGDLHGC------------YDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE----VLRYVKS 54 (279)
T ss_pred CcEEEEEcccCC------------HHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHH----HHHHHHh
Confidence 578999999987 457899998876 4478999999999998855554 4445543
No 98
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=96.89 E-value=0.0059 Score=61.48 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=28.3
Q ss_pred CCceEEEEEccCCCC-CCCcCccccccCCcCCCEEEeCccccc
Q 004713 216 SDWFNILVLHQNRVK-TNPKNAINEHFLPRFLDFVVWGHEHEC 257 (734)
Q Consensus 216 ~~~fnILvlHqn~~~-~~~~~~I~e~lLp~~~DyVa~GH~H~~ 257 (734)
...--|+|+|.+... .++.+.+.+-+-...++.++.||+|+.
T Consensus 157 ~~~~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv 199 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGV 199 (230)
T ss_pred CcCeEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCC
Confidence 344568999997543 233344544344556999999999995
No 99
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.67 E-value=0.026 Score=59.99 Aligned_cols=191 Identities=20% Similarity=0.206 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
|||++.|+= |.. -..++...|...+ ++++|+++..||.+-...+-.. ...+.|.
T Consensus 1 ~ilfigdi~-g~~---------G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~---~~~~~L~------------ 55 (255)
T cd07382 1 KILFIGDIV-GKP---------GRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITP---KIAKELL------------ 55 (255)
T ss_pred CEEEEEeCC-CHH---------HHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCH---HHHHHHH------------
Confidence 578888763 221 2345555555554 5689999999999876543322 3344443
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCc----eeeccceeecCCCccceeEE
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKMVLGGSGVGEITVY 168 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~gl----Vn~FGk~~l~~~~~~~i~v~ 168 (734)
..++-++.+ |||....+ . .+..|..... .||.... + ..
T Consensus 56 -----------------------~~G~D~iTl-GNH~fD~g-e---l~~~l~~~~~~l~~aN~~~~~--p--------g~ 97 (255)
T cd07382 56 -----------------------SAGVDVITM-GNHTWDKK-E---ILDFIDEEPRLLRPANYPPGT--P--------GR 97 (255)
T ss_pred -----------------------hcCCCEEEe-cccccCcc-h---HHHHHhcCcCceEeeecCCCC--C--------CC
Confidence 346777777 99988766 2 1233332211 1222110 0 11
Q ss_pred E-EEEeeCCeeEEEEecCCCChHHHHhhhcCh-hhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCccccccCCcCC
Q 004713 169 P-ILIRKGSTAVALYGLGNIRDERLNRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246 (734)
Q Consensus 169 P-ill~kG~t~vaLyGL~~i~derL~~~f~~~-~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~ 246 (734)
| .++..++.+|+|.|+--.. -+. .+..+ ..++...++.. ..-.+-|+++|..... .+..+ ...++..+
T Consensus 98 ~~~i~~~~G~kIaVigl~g~~--~~~-~~~~P~~~~~~~v~~lk----~~~D~IIV~~H~g~ts--Ek~al-a~~ldg~V 167 (255)
T cd07382 98 GYGVVEVNGKKIAVINLMGRV--FMP-PLDNPFRAADELLEELK----EEADIIFVDFHAEATS--EKIAL-GWYLDGRV 167 (255)
T ss_pred CeEEEEECCEEEEEEEEeccc--CCC-cCCCHHHHHHHHHHHHh----cCCCEEEEEECCCCCH--HHHHH-HHhCCCCc
Confidence 2 2345667889988874110 000 11111 11221112211 1345889999985421 00011 13556679
Q ss_pred CEEEeCcccccccCCeecCCCCceEecCCCC
Q 004713 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (734)
Q Consensus 247 DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~ 277 (734)
|.|+-||.|....+.+.+++...++...|-.
T Consensus 168 dvIvGtHTHv~t~d~~il~~gTa~itd~Gm~ 198 (255)
T cd07382 168 SAVVGTHTHVQTADERILPGGTAYITDVGMT 198 (255)
T ss_pred eEEEeCCCCccCCccEEeeCCeEEEecCccc
Confidence 9999999999876644454433355555433
No 100
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.65 E-value=0.0036 Score=64.80 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=36.7
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--------CCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004713 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--------EVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (734)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--------~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~ 81 (734)
.+++|+|-- +.+|+++++.+... ..|.|++.||+.|...-|.. ++++|.+
T Consensus 2 ~vIGDIHG~------------~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~----vl~~l~~ 59 (222)
T cd07413 2 DFIGDIHGH------------AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRE----LLEIVKS 59 (222)
T ss_pred EEEEeccCC------------HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHH----HHHHHHH
Confidence 578999986 45788888776332 47899999999999866665 4455544
No 101
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.57 E-value=0.0068 Score=65.65 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh------cCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e------~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~ 81 (734)
+|++++|+|-- +..|+++++.+.+ ...+.||+.||+.|...-+.. ++++|..
T Consensus 3 ~iyaIGDIHG~------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~e----Vld~L~~ 60 (304)
T cd07421 3 VVICVGDIHGY------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRK----VIDFLIS 60 (304)
T ss_pred eEEEEEeccCC------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHH----HHHHHHH
Confidence 68999999987 3467777665432 246789999999998855554 4555544
No 102
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.19 E-value=0.011 Score=63.09 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHH
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKA 75 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~ 75 (734)
.++.+++|+|-. +.+|.++++.+.....+.+|+.||++|...++.+++...
T Consensus 28 ~~i~vvGDiHG~------------~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l 78 (271)
T smart00156 28 APVTVCGDIHGQ------------FDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLL 78 (271)
T ss_pred CCEEEEEeCcCC------------HHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHH
Confidence 579999999977 456777777666677899999999999998887655433
No 103
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.18 E-value=0.095 Score=54.95 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCCCCCc-chHHHHhhhCCceeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCChHHH-H
Q 004713 116 NVGLPVFSIHGNHDDPAGVDN-LSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERL-N 193 (734)
Q Consensus 116 n~~IPVf~I~GNHD~p~g~~~-lsaldiL~~~glVn~FGk~~l~~~~~~~i~v~Pill~kG~t~vaLyGL~~i~derL-~ 193 (734)
..++-++.+..||-.-.|... ...++.|...|+ .++|... . ..-...|+++..++.+|++.|..+...... .
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi-~~~Gag~----~-~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~ 146 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGI-PYVGAGR----N-LEEARRPAIIEVNGVKIAFLGYTDGENGYSSA 146 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHHHCCC-cEeECcC----C-hHHhcCeEEEEECCEEEEEEEEEcCCCCCccc
Confidence 357889999999976665433 355778888884 5576311 0 111235788888999999998764421000 0
Q ss_pred hh-----hc----------ChhhHhhccchhhhhccCCCceEEEEEccCCCCC-CCcC---ccccccCCcCCCEEEeCcc
Q 004713 194 RM-----FQ----------TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHE 254 (734)
Q Consensus 194 ~~-----f~----------~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~-~~~~---~I~e~lLp~~~DyVa~GH~ 254 (734)
.. +. ....++.+..... .......+-|+++|...... .|.. .+...++..++|+|+-+|-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 147 NGNRPYGFSYRPDKAGLNPNRPGIERIKEDIR-EARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred cccccccccccccccccccccchHHHHHHHHH-HHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCC
Confidence 00 00 0000011111110 11124678999999864321 1111 1223466789999999999
Q ss_pred ccccc
Q 004713 255 HECLI 259 (734)
Q Consensus 255 H~~~i 259 (734)
|.-+.
T Consensus 226 Hv~q~ 230 (250)
T PF09587_consen 226 HVIQP 230 (250)
T ss_pred Ccccc
Confidence 99764
No 104
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.10 E-value=0.012 Score=59.66 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=35.1
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCC
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPS 68 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLiaGDLFd~~kPs 68 (734)
|+++||.|++... ..++.|++++..+. +.+++.+|++|++.+...+.
T Consensus 1 Iv~~Sg~~~~~~~-------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~ 48 (209)
T PF04042_consen 1 IVFASGPFLDSDN-------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPY 48 (209)
T ss_dssp EEEEES--CTTT--------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHH
T ss_pred CEEEecCccCCCH-------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccc
Confidence 7899999999432 23778888888877 89999999999999976544
No 105
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.012 Score=57.55 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=52.2
Q ss_pred CceEEEEEccCCC-CCCCcCccccccCC--cCCCEEEeCcccccccCCeecCCCCceEecCCCCcc-cccccCccCCcEE
Q 004713 217 DWFNILVLHQNRV-KTNPKNAINEHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-TSLIEGESKPKHV 292 (734)
Q Consensus 217 ~~fnILvlHqn~~-~~~~~~~I~e~lLp--~~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v~-tSl~EgE~~~Kgv 292 (734)
+.|+|.+.|+... +.+.. ....+|. -.+|..+|||+|++... +. .+..+++|||..+ .+.++-+.....|
T Consensus 78 GqfkIG~chGhqViP~gd~--~sL~~LaRqldvDILl~G~Th~f~Ay--e~--eg~ffvnPGSaTGAfn~~~t~~~~PSF 151 (183)
T KOG3325|consen 78 GQFKIGLCHGHQVIPWGDP--ESLALLARQLDVDILLTGHTHKFEAY--EH--EGKFFVNPGSATGAFNVSDTDIIVPSF 151 (183)
T ss_pred ccEEEEeecCcEeecCCCH--HHHHHHHHhcCCcEEEeCCceeEEEE--Ee--CCcEEeCCCcccCCCcccccCCCCCce
Confidence 6689999997532 22111 1112332 36899999999998542 33 3568899999764 5555544456789
Q ss_pred EEEEEeCCce
Q 004713 293 LLLEIKENQY 302 (734)
Q Consensus 293 ~LVeI~~~~~ 302 (734)
.|++|.+..+
T Consensus 152 vLmDiqg~~~ 161 (183)
T KOG3325|consen 152 VLMDIQGSTV 161 (183)
T ss_pred EEEEecCCEE
Confidence 9999988653
No 106
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.98 E-value=0.073 Score=55.25 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCCCCcc-hHHHHhhhCCceeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCChHHHH-h
Q 004713 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLN-R 194 (734)
Q Consensus 117 ~~IPVf~I~GNHD~p~g~~~l-saldiL~~~glVn~FGk~~l~~~~~~~i~v~Pill~kG~t~vaLyGL~~i~derL~-~ 194 (734)
.++-++.+.+||..-.|...+ ..++.|...|+ .++|... ... -...|+++..++.+|++.|+......... .
T Consensus 76 ~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i-~~~g~~~----~~~-~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~ 149 (239)
T cd07381 76 AGFDVVSLANNHTLDYGEEGLLDTLDALDEAGI-AHAGAGR----NLE-EARRPAILEVNGIKVAFLAYTYGTNGIPLAA 149 (239)
T ss_pred hCCCEEEcccccccccchHHHHHHHHHHHHcCC-ceeECCC----CHH-HhcCcEEEEECCEEEEEEEEECCCCCCcCcc
Confidence 477888888999987776543 33456666654 3344311 000 01245667778899999998643211000 0
Q ss_pred ------hhc-ChhhHhhccchhhhhccCCCceEEEEEccCCCCC-CCcC---ccccccCCcCCCEEEeCccccccc
Q 004713 195 ------MFQ-TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHEHECLI 259 (734)
Q Consensus 195 ------~f~-~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~-~~~~---~I~e~lLp~~~DyVa~GH~H~~~i 259 (734)
.+. ....+.....+. .....+-|+++|...... .|.. .+-..++..++|+|+-||-|..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l----r~~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~ 221 (239)
T cd07381 150 GARPGGVNPLDLERIAADIAEA----KKKADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQG 221 (239)
T ss_pred cCCccccCccCHHHHHHHHHHH----hhcCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCC
Confidence 000 000111111111 113578999999865421 1111 111234456899999999998653
No 107
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=95.84 E-value=0.034 Score=64.66 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=60.0
Q ss_pred CCceEEEEEcCCCCCC--CCC----------------------------chh-chhcHHHHHHHHHHHHHhcC--CCEEE
Q 004713 10 ANTVRILVATDCHLGY--MEK----------------------------DEI-RRHDSFEAFEEICSIAEQKE--VDFVL 56 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~--~e~----------------------------d~~-R~~Ds~~aFeeIl~~A~e~~--VD~VL 56 (734)
.-++||||+||+|+.. .+. +.. -.+-.+.+++.+|+.+++.. +|+|+
T Consensus 136 ~p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~ 215 (577)
T KOG3770|consen 136 NPTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYII 215 (577)
T ss_pred CCceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 3569999999999962 110 001 12334789999999887753 79999
Q ss_pred EcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004713 57 LGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (734)
Q Consensus 57 iaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p 131 (734)
.+||+-.+. ....+.....+.+.++. ..+...| .++|||..-||||..
T Consensus 216 wTGD~~~H~-~w~~t~~~~l~~~~~l~---------------~~~~e~F-----------pdvpvypalGNhe~~ 263 (577)
T KOG3770|consen 216 WTGDNVAHD-VWAQTEEENLSMLSRLT---------------SLLSEYF-----------PDVPVYPALGNHEIH 263 (577)
T ss_pred EeCCCCccc-chhhhHHHHHHHHHHHH---------------HHHHHhC-----------CCCceeeecccCCCC
Confidence 999987554 22333333333444331 0111123 378999999999973
No 108
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.71 E-value=0.026 Score=61.41 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHH
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~ 74 (734)
-++.+++|+|-. +.+|..+++.+.....+.+|+.||++|....+.+++..
T Consensus 43 ~~i~ViGDIHG~------------~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~l 92 (305)
T cd07416 43 APVTVCGDIHGQ------------FYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLY 92 (305)
T ss_pred CCEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHHH
Confidence 368999999977 44677787776666679999999999999888765443
No 109
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=95.65 E-value=0.15 Score=54.67 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~ 91 (734)
||||++.|+= |. --...+.+.|..++ ++++|+++..||.+....... ..+++.|.
T Consensus 1 m~ilfiGDi~-G~---------~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~---~~~~~~L~----------- 56 (266)
T TIGR00282 1 IKFLFIGDVY-GK---------AGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLT---LKIYEFLK----------- 56 (266)
T ss_pred CeEEEEEecC-CH---------HHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCC---HHHHHHHH-----------
Confidence 7999999986 32 12456777777665 567999999999997653222 23444443
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhC-Cc---eeeccceeecCCCccceeE
Q 004713 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSAC-NL---VNYFGKMVLGGSGVGEITV 167 (734)
Q Consensus 92 e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~-gl---Vn~FGk~~l~~~~~~~i~v 167 (734)
+.++-|+.+ |||..-.+. .++.+... .+ .||-.. .++.+
T Consensus 57 ------------------------~~GvDviT~-GNH~~Dkge----~~~~i~~~~~~lrpanyp~~--~pG~g------ 99 (266)
T TIGR00282 57 ------------------------QSGVNYITM-GNHTWFQKL----ILDVVINQKDLVRPLNFDTS--FAGKG------ 99 (266)
T ss_pred ------------------------hcCCCEEEc-cchhccCcH----HHHHHhccccccccCCCCCC--CCCCC------
Confidence 357888888 899987653 11222211 11 122110 00111
Q ss_pred EEEEEeeCCeeEEEEecC---CCChHHHHhhhcChhhHhhccchhhhhccCCCceEEEEEccCCCCCCCcCccccccCCc
Q 004713 168 YPILIRKGSTAVALYGLG---NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (734)
Q Consensus 168 ~Pill~kG~t~vaLyGL~---~i~derL~~~f~~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~ 244 (734)
...+..++.++++..+- ++..-.+...|. .++.+.++.. ....+-|+.+|..... +...-..++..
T Consensus 100 -~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~---~~d~~i~~lk----~~~d~IIVd~Haeats---EK~a~~~~ldg 168 (266)
T TIGR00282 100 -SLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFK---VLKELINMLK----KDCDLIFVDFHAETTS---EKNAFGMAFDG 168 (266)
T ss_pred -cEEEEECCEEEEEEECCCcccCCccccCCHHH---HHHHHHHhhh----cCCCEEEEEeCCCCHH---HHHHHHHHhCC
Confidence 12235566677776652 221100111111 1222222211 1245889999986421 11111346778
Q ss_pred CCCEEEeCcccccccCCeecCC
Q 004713 245 FLDFVVWGHEHECLIDPQEVPG 266 (734)
Q Consensus 245 ~~DyVa~GH~H~~~i~Pq~~~~ 266 (734)
.+|.|+--|.|-..-+.+-+++
T Consensus 169 ~vsaVvGtHtHV~TaD~~il~~ 190 (266)
T TIGR00282 169 YVTAVVGTHTHVPTADLRILPK 190 (266)
T ss_pred CccEEEeCCCCCCCCcceeCCC
Confidence 8999999999997655444443
No 110
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.41 E-value=0.24 Score=51.64 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCCCCcc-hHHHHhhhCCceeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCChHHHH--
Q 004713 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLN-- 193 (734)
Q Consensus 117 ~~IPVf~I~GNHD~p~g~~~l-saldiL~~~glVn~FGk~~l~~~~~~~i~v~Pill~kG~t~vaLyGL~~i~derL~-- 193 (734)
.++-++.+.+||+.-.|...+ ..++.|..+|+ .++|... .... ...|+++..++.+|++.|+.+.....+.
T Consensus 72 ~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i-~~~g~~~----~~~~-~~~~~i~~~~g~kIg~ig~t~~~~~~~~~~ 145 (239)
T smart00854 72 AGFDVVSLANNHSLDYGEEGLLDTLAALDAAGI-AHVGAGR----NLAE-ARKPAIVEVKGIKIALLAYTYGTNNGWAAS 145 (239)
T ss_pred hCCCEEEeccCcccccchHHHHHHHHHHHHCCC-CEeeCCC----ChHH-hhCcEEEEECCEEEEEEEEEcCCCCCcccC
Confidence 467788899999998876543 33455666654 3455321 0011 1235667788899999997543210000
Q ss_pred -------hhhc-ChhhHhhccchhhhhccCCCceEEEEEccCCCCC-CCcC---ccccccCCcCCCEEEeCccccccc
Q 004713 194 -------RMFQ-TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHEHECLI 259 (734)
Q Consensus 194 -------~~f~-~~~~v~~l~p~~~~~~~~~~~fnILvlHqn~~~~-~~~~---~I~e~lLp~~~DyVa~GH~H~~~i 259 (734)
.+.. +...+.....+. .....+-|+++|...... .|.. .+...++..++|+|+-||-|..+.
T Consensus 146 ~~~~g~~~~~~~~~~~i~~~i~~l----r~~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~ 219 (239)
T smart00854 146 KDRPGVALLPDLDREKILADIARA----RKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQP 219 (239)
T ss_pred CCCCCeeecCcCCHHHHHHHHHHH----hccCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCCc
Confidence 0000 000111101111 123578999999876432 1111 112334456899999999998653
No 111
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.15 E-value=0.035 Score=59.90 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~ 73 (734)
++.+++|+|-. +..|.+++..+.....+.+|+.||++|...++.+++.
T Consensus 43 ~i~vvGDIHG~------------~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~ 90 (285)
T cd07415 43 PVTVCGDIHGQ------------FYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFL 90 (285)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHH
Confidence 58999999976 4456777766655567889999999999988876543
No 112
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=94.91 E-value=0.055 Score=58.66 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~ 73 (734)
++.+++|+|-. +..|.+++........+-+|+.||++|...++.+++.
T Consensus 51 ~i~viGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ 98 (293)
T cd07414 51 PLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETIC 98 (293)
T ss_pred ceEEEEecCCC------------HHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHH
Confidence 58999999976 3467777776655667889999999999988876543
No 113
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=94.83 E-value=0.05 Score=59.74 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl 72 (734)
++.+++|+|-. +..+.+++..+.....+-+|+.||++|...++.+++
T Consensus 60 ~i~vvGDIHG~------------~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl 106 (320)
T PTZ00480 60 PLKICGDVHGQ------------YFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETI 106 (320)
T ss_pred CeEEEeecccC------------HHHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHH
Confidence 58999999976 346677777665566778999999999998887643
No 114
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=94.03 E-value=0.1 Score=56.98 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~ 73 (734)
.+.+++|+|-. +.++..+++.+.....+.+|+.||++|...++.+++.
T Consensus 44 ~i~vvGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ 91 (303)
T PTZ00239 44 PVNVCGDIHGQ------------FYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETME 91 (303)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHHH
Confidence 48899999976 3456667765555567889999999999988876543
No 115
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=93.82 E-value=0.099 Score=56.75 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=35.4
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHH
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl 72 (734)
+.+++|+|-. +.+|.++++.+.-...+-+|+.||++|...++.+++
T Consensus 54 ~~ViGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl 99 (294)
T PTZ00244 54 VRVCGDTHGQ------------YYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETI 99 (294)
T ss_pred ceeeccCCCC------------HHHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHH
Confidence 7889999977 346777777665555667889999999998887654
No 116
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.72 E-value=0.14 Score=57.42 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChhHHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLV 73 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~V-D~VLiaGDLFd~~kPs~~tl~ 73 (734)
+|++++|+|-- +.+|..+++.+.-... +.+|+.||+.|....+.+++.
T Consensus 67 ~i~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~ 115 (377)
T cd07418 67 EVVVVGDVHGQ------------LHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFL 115 (377)
T ss_pred CEEEEEecCCC------------HHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHH
Confidence 57999999986 3466677765433223 458999999999988876543
No 117
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=93.56 E-value=0.16 Score=55.84 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCChhHHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLV 73 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~-~VD~VLiaGDLFd~~kPs~~tl~ 73 (734)
++.+++|+|--| ..|..+++.+.-. .-+.+|+.||+.|...-+.+++.
T Consensus 52 ~~~vvGDiHG~~------------~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ 100 (321)
T cd07420 52 QVTICGDLHGKL------------DDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILI 100 (321)
T ss_pred CeEEEEeCCCCH------------HHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHH
Confidence 689999999873 4566666544322 23679999999999987776543
No 118
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=93.52 E-value=0.14 Score=56.17 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCCChhHHHHH
Q 004713 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKA 75 (734)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e-~~VD~VLiaGDLFd~~kPs~~tl~~~ 75 (734)
..++.+++|+|-- +..|.+++..+.- ..-|-+|+.||++|....+.+++...
T Consensus 59 ~~~~~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll 111 (316)
T cd07417 59 GEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTL 111 (316)
T ss_pred CceeEEeecccCC------------HHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHH
Confidence 3579999999976 3456666655432 12367999999999999888765443
No 119
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.43 E-value=0.15 Score=50.06 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=34.0
Q ss_pred HhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCC
Q 004713 48 EQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGN 127 (734)
Q Consensus 48 ~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GN 127 (734)
+...+|++|+.||+|....-. .-|..| .+++..+.+|+|+|-||
T Consensus 23 k~gpFd~~ic~Gdff~~~~~~--------~~~~~y----------------------------~~g~~~~pipTyf~ggn 66 (150)
T cd07380 23 KKGPFDALLCVGDFFGDDEDD--------EELEAY----------------------------KDGSKKVPIPTYFLGGN 66 (150)
T ss_pred ccCCeeEEEEecCccCCccch--------hhHHHH----------------------------hcCCccCCCCEEEECCC
Confidence 456899999999999866433 223333 23445789999999999
Q ss_pred CC
Q 004713 128 HD 129 (734)
Q Consensus 128 HD 129 (734)
|.
T Consensus 67 ~~ 68 (150)
T cd07380 67 NP 68 (150)
T ss_pred CC
Confidence 96
No 120
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=92.97 E-value=0.24 Score=54.13 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----C----CCEEEEcCCCCCCCCCChhHHH
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E----VDFVLLGGDLFHENKPSRSTLV 73 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~----VD~VLiaGDLFd~~kPs~~tl~ 73 (734)
.+.+++|+|-. +..|.++++.+.-. . ..-+|+.||++|....+.+++.
T Consensus 49 ~~~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ 104 (311)
T cd07419 49 PIKIFGDIHGQ------------FGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETIC 104 (311)
T ss_pred CEEEEEeccCC------------HHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHH
Confidence 47888999976 34566666544211 0 1247899999999988876544
No 121
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=92.65 E-value=0.45 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.4
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCC
Q 004713 110 YEDPHFNVGLPVFSIHGNHDDPA 132 (734)
Q Consensus 110 y~dpn~n~~IPVf~I~GNHD~p~ 132 (734)
|......+.+|.+.|-|||....
T Consensus 67 YYsge~~APVlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 67 YYSGEIKAPVLTIFIGGNHEASN 89 (456)
T ss_pred HhCCcccCceeEEEecCchHHHH
Confidence 33344578899999999999754
No 122
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=91.64 E-value=0.83 Score=52.54 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCCceEEEEEcCCCCCCCCCc----------h--------hchhc--HHHHHHHHHHHHH----hcCCCEEEEcCCCCCC
Q 004713 9 IANTVRILVATDCHLGYMEKD----------E--------IRRHD--SFEAFEEICSIAE----QKEVDFVLLGGDLFHE 64 (734)
Q Consensus 9 ~~~~mRILh~SD~HLG~~e~d----------~--------~R~~D--s~~aFeeIl~~A~----e~~VD~VLiaGDLFd~ 64 (734)
...-.+|+++||+||-=.+.- + .|-.. +-..|+.+++.++ ....||+|-.||.-|.
T Consensus 33 ~~~l~~f~~~tDvHi~D~esP~r~~~l~~~~~~~~~~~s~y~P~~~~t~~v~~AaVqtvNal~~~~p~df~is~GD~~nn 112 (492)
T TIGR03768 33 GKRLLRFFTISDVHITDKESPNQLIYLQQTEPAAAPNTSIYSPVMLYSTQVLDAAVQTVNDLHKRDRFDFGISLGDACNS 112 (492)
T ss_pred cchheeeeeeeeeeeccccCchhhhhhcccccccCCCccccChhHHHHHHHHHHHHHHHHHhhcCCCceEEEeccccccc
Confidence 344579999999999633210 0 11111 2234566666554 4569999999999886
Q ss_pred CCCChhHHHHHHHHHHHhccCCCCcceeeechh-----hhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004713 65 NKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQ-----AVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (734)
Q Consensus 65 ~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~-----~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~ 132 (734)
. ....|...+.+|. | ++|.= -|=. .+-|+..| .-+-++..||+|.+.||||...
T Consensus 113 ~--~~nElrWyidvld----G-~~I~p--~SG~~~~~e~v~~~~p~-----~a~GL~~~iPWY~v~GNHD~~~ 171 (492)
T TIGR03768 113 T--QYNELRWYIDVLD----G-KPITP--SSGAHAGADTIDYQKPF-----QAAGLDKSIPWYQVLGNHDHFW 171 (492)
T ss_pred h--hHHHHHHHHHHhc----C-Ceecc--CCCCCCCccCCCCCCcc-----cccccCCCCceEEeecCCcccc
Confidence 5 3445666666653 2 34421 0100 11233222 1223456699999999999753
No 123
>PF12235 FXR1P_C: Fragile X-related 1 protein C terminal; InterPro: IPR022034 Fragile X mental retardation 1 protein (FMR1P) , fragile X-related 1 protein (FXR1P) and fragile X-related 2 protein (FXR2P) are members of a small family of RNA-binding proteins that are thought to transport mRNA and to control their translation []. The proteins contain two KH domains and a RGG box that are characteristic motifs in RNA-binding proteins as well as nuclear localization and export signals. ; GO: 0003723 RNA binding; PDB: 2LA5_B.
Probab=87.32 E-value=0.23 Score=48.95 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=0.0
Q ss_pred cccccccc-CCcccccCC
Q 004713 545 DEDTTQIS-DTKSATRGR 561 (734)
Q Consensus 545 ~~~~~~~~-~~~~~~~~~ 561 (734)
||-++|+- |.+|+++.+
T Consensus 12 DEQLRqig~g~r~~p~~~ 29 (155)
T PF12235_consen 12 DEQLRQIGGGFRPPPRRP 29 (155)
T ss_dssp ------------------
T ss_pred HHHHHHhcCCCCCCCCCc
Confidence 46777753 455655443
No 124
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=82.76 E-value=3.5 Score=48.61 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=36.7
Q ss_pred CCceEEEEEcCCCCCCC--CCchhchhc--HHHHH-HHHHHHHHhcCCCEEEE-cCCCCCCCC
Q 004713 10 ANTVRILVATDCHLGYM--EKDEIRRHD--SFEAF-EEICSIAEQKEVDFVLL-GGDLFHENK 66 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~--e~d~~R~~D--s~~aF-eeIl~~A~e~~VD~VLi-aGDLFd~~k 66 (734)
...++|+|+||+|-+.. ..+..+..| -|.+| ..+-++|....||.+++ +||+.+.+-
T Consensus 40 ~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg 102 (602)
T KOG4419|consen 40 WGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTG 102 (602)
T ss_pred cccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCce
Confidence 45589999999997654 222211111 14444 44555688889998766 899888764
No 125
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=71.46 E-value=1.3 Score=52.14 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhcC
Q 004713 38 EAFEEICSIAEQKE 51 (734)
Q Consensus 38 ~aFeeIl~~A~e~~ 51 (734)
.+|+.+++++.+++
T Consensus 59 ~Ai~a~~DLcEDed 72 (556)
T PF05918_consen 59 EAINAQLDLCEDED 72 (556)
T ss_dssp HHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHhccc
Confidence 34555555554444
No 126
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=69.29 E-value=27 Score=38.07 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=28.2
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 004713 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67 (734)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kP 67 (734)
...+-.|++.++|+|-=... |- .--.=|+++++||...-..+
T Consensus 57 ~~~~~~r~VcisdtH~~~~~---------------i~---~~p~gDvlihagdfT~~g~~ 98 (305)
T KOG3947|consen 57 VGPGYARFVCISDTHELTFD---------------IN---DIPDGDVLIHAGDFTNLGLP 98 (305)
T ss_pred CCCCceEEEEecCcccccCc---------------cc---cCCCCceEEeccCCccccCH
Confidence 45667899999999954221 00 12346899999998765543
No 127
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=68.20 E-value=2.6 Score=39.37 Aligned_cols=9 Identities=100% Similarity=1.915 Sum_probs=3.3
Q ss_pred CCCCCCCCc
Q 004713 586 GRGRGRGRG 594 (734)
Q Consensus 586 ~~~~~~~~~ 594 (734)
|||||||||
T Consensus 97 grgrg~Grg 105 (109)
T KOG3428|consen 97 GRGRGRGRG 105 (109)
T ss_pred ccccccccC
Confidence 333333333
No 128
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.08 E-value=12 Score=43.09 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004713 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE-VDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (734)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~-VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~ 91 (734)
.|||++.|.--. .-+.|+.|-+.-++.+ .|++++.|++|.+..-+.. +.+|..
T Consensus 6 ~kILv~Gd~~Gr-----------~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e--------~~~ykn------- 59 (528)
T KOG2476|consen 6 AKILVCGDVEGR-----------FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAE--------VEKYKN------- 59 (528)
T ss_pred ceEEEEcCcccc-----------HHHHHHHHHHHhhcCCCceEEEEecccCCCccchhH--------HHHHhc-------
Confidence 799999986433 2346677766666666 8999999999987432221 223321
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccce
Q 004713 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKM 155 (734)
Q Consensus 92 e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~ 155 (734)
.+..+.||+|+.-+|--.+.. .+...+-...+.++.|+|+.
T Consensus 60 ---------------------g~~~vPiptY~~g~~~~~~~k--y~~n~~g~Ei~~Nlt~Lg~~ 100 (528)
T KOG2476|consen 60 ---------------------GTKKVPIPTYFLGDNANETEK--YFENSDGKEIAENLTYLGRK 100 (528)
T ss_pred ---------------------CCccCceeEEEecCCCCccce--ecccCCCcccccceeeeccc
Confidence 224678999999888753321 12222444556667777764
No 129
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=64.07 E-value=8.4 Score=44.00 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 004713 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd 63 (734)
...+||++.|..+..... +.++..+. ...++||+|+.||..-
T Consensus 103 ~~~~r~a~~SC~~~~~~~---------~~~~~~~a---~~~~~D~~l~lGD~IY 144 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDGY---------FPAYRRIA---ERDDPDFVLHLGDQIY 144 (453)
T ss_dssp ---EEEEEE----CCC------------HHHHHHT---T-S--SEEEE-S-SS-
T ss_pred CCceEEEEECCCCcccCh---------HHHHHhhh---ccCCCcEEEEeCCeee
Confidence 445999999999864221 34444443 3378999999999653
No 130
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=62.48 E-value=2.5 Score=49.82 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=4.0
Q ss_pred ccchhhHHHHH
Q 004713 423 ELNQQNIEALV 433 (734)
Q Consensus 423 ~l~~~~i~~~v 433 (734)
+++-..||-++
T Consensus 327 ~l~fs~vEcLL 337 (556)
T PF05918_consen 327 KLQFSYVECLL 337 (556)
T ss_dssp ---HHHHHHHH
T ss_pred cccchHhhHHH
Confidence 34444555544
No 131
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=62.34 E-value=30 Score=37.94 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCCC
Q 004713 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----QKEVDFVLLGGDLFHEN 65 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-----e~~VD~VLiaGDLFd~~ 65 (734)
....+|+++||+||.-. ..+++|+.+++.-. ++-|-++|+.|++....
T Consensus 25 ~~~~~~VilSDV~LD~p--------~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p 77 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSP--------YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLK 77 (291)
T ss_pred CCceEEEEEEeeccCCH--------HHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCc
Confidence 34578999999999854 24566777766552 23488999999987653
No 132
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=60.98 E-value=30 Score=35.98 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCC
Q 004713 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNV 117 (734)
Q Consensus 38 ~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~ 117 (734)
+.+++++..+.+..+|+|+++|=. .-....+..+++.+++. .
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~----gvt~~~~~~~v~~ik~~----------------------------------~ 52 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL----GIVESNLDQTVKKIKKI----------------------------------T 52 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC----CCCHHHHHHHHHHHHhh----------------------------------c
Confidence 556677777888899999999972 11344456667777653 3
Q ss_pred CCcEEEEcCCCCCCC
Q 004713 118 GLPVFSIHGNHDDPA 132 (734)
Q Consensus 118 ~IPVf~I~GNHD~p~ 132 (734)
.+||++-+||++.-+
T Consensus 53 ~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 53 NLPVILFPGNVNGLS 67 (205)
T ss_pred CCCEEEECCCccccC
Confidence 799999999999754
No 133
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=59.72 E-value=8.4 Score=45.91 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHh
Q 004713 42 EICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (734)
Q Consensus 42 eIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l 82 (734)
.+..+++..-||-+=+.||+||.. |.+. ..|+.|..+
T Consensus 175 al~~lIqrL~VDhLHIvGDIyDRG-p~pd---~ImD~Lm~~ 211 (640)
T PF06874_consen 175 ALSELIQRLAVDHLHIVGDIYDRG-PRPD---KIMDRLMNY 211 (640)
T ss_pred HHHHHHHHHhhhheeecccccCCC-CChh---HHHHHHhcC
Confidence 344455677899999999999987 4443 467766554
No 134
>PRK09982 universal stress protein UspD; Provisional
Probab=44.01 E-value=47 Score=31.39 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q 004713 40 FEEICSIAEQKEVDFVLLG 58 (734)
Q Consensus 40 FeeIl~~A~e~~VD~VLia 58 (734)
-++|++.|.+.++|+|+++
T Consensus 92 ~~~I~~~A~~~~aDLIVmG 110 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCG 110 (142)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3788999999999998886
No 135
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=43.69 E-value=47 Score=35.23 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCc
Q 004713 41 EEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLP 120 (734)
Q Consensus 41 eeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IP 120 (734)
+++++.+.+...|+|+++|=+ + ..++..++.++++. ..+|
T Consensus 22 ~~~~~~~~~~gtDai~VGGS~-~-----~~~~d~vv~~ik~~----------------------------------~~lP 61 (230)
T PF01884_consen 22 EEALEAACESGTDAIIVGGSD-T-----GVTLDNVVALIKRV----------------------------------TDLP 61 (230)
T ss_dssp HHHHHHHHCTT-SEEEEE-ST-H-----CHHHHHHHHHHHHH----------------------------------SSS-
T ss_pred HHHHHHHHhcCCCEEEECCCC-C-----ccchHHHHHHHHhc----------------------------------CCCC
Confidence 566777789999999999987 1 23566778888764 4799
Q ss_pred EEEEcCCCCCCC
Q 004713 121 VFSIHGNHDDPA 132 (734)
Q Consensus 121 Vf~I~GNHD~p~ 132 (734)
|+.-|||++.-+
T Consensus 62 vilfPg~~~~vs 73 (230)
T PF01884_consen 62 VILFPGSPSQVS 73 (230)
T ss_dssp EEEETSTCCG--
T ss_pred EEEeCCChhhcC
Confidence 999999998653
No 136
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=41.96 E-value=47 Score=35.81 Aligned_cols=46 Identities=24% Similarity=0.202 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHH
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl 72 (734)
+.++.|+|-- |.-+-+++++.-.-.----|+.||+.|...-|.++.
T Consensus 45 vtvcGDIHGQ------------f~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~ 90 (303)
T KOG0372|consen 45 VTVCGDIHGQ------------FYDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETF 90 (303)
T ss_pred cEEeecccch------------HHHHHHHHHhCCCCCCCceEeecchhccccchHHHH
Confidence 5678899864 222334444332222233588899999998887653
No 137
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=41.21 E-value=57 Score=34.59 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHH
Q 004713 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEI 78 (734)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~l 78 (734)
+-++.|+|-- |--+.++....-.------++-||+.|...-|.++....+-+
T Consensus 48 VTvCGDIHGQ------------FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~L 99 (306)
T KOG0373|consen 48 VTVCGDIHGQ------------FYDLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLL 99 (306)
T ss_pred eeEeeccchh------------HHHHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHH
Confidence 5678888854 223344444332222222477899999998887765544433
No 138
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=40.39 E-value=81 Score=33.64 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCC
Q 004713 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (734)
Q Consensus 40 FeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~I 119 (734)
-.++++.+.+-..|+|+++|=.=. ..+.+..+++.++. +..+
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~gv----t~~~~~~~v~~ik~----------------------------------~~~l 71 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSDGV----TEENVDNVVEAIKE----------------------------------RTDL 71 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCcccc----cHHHHHHHHHHHHh----------------------------------hcCC
Confidence 467888888999999999996422 23345566666663 3479
Q ss_pred cEEEEcCCCCCCC
Q 004713 120 PVFSIHGNHDDPA 132 (734)
Q Consensus 120 PVf~I~GNHD~p~ 132 (734)
||+.-||||..-+
T Consensus 72 PvilfP~~~~~is 84 (240)
T COG1646 72 PVILFPGSPSGIS 84 (240)
T ss_pred CEEEecCChhccC
Confidence 9999999998754
No 139
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=40.34 E-value=75 Score=33.55 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCC
Q 004713 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (734)
Q Consensus 40 FeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~I 119 (734)
..++++.+.+...|+|+++|=.- .....+..++..++++ .+
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~----vt~~~~~~~v~~ik~~-----------------------------------~l 56 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQG----VTYEKTDTLIEALRRY-----------------------------------GL 56 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCc----ccHHHHHHHHHHHhcc-----------------------------------CC
Confidence 34677778888999999999752 1223345566666643 49
Q ss_pred cEEEEcCCCCCCC
Q 004713 120 PVFSIHGNHDDPA 132 (734)
Q Consensus 120 PVf~I~GNHD~p~ 132 (734)
||+.-|||++.-.
T Consensus 57 Pvilfp~~~~~i~ 69 (223)
T TIGR01768 57 PIILFPSNPTNVS 69 (223)
T ss_pred CEEEeCCCccccC
Confidence 9999999999754
No 140
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=40.06 E-value=42 Score=37.40 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=44.6
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004713 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (734)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~V-D~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e 92 (734)
-|.++.|+|--|. -+..+++.+....+ .-.|+.||..|...-+.++ +-+|-.|.
T Consensus 60 PV~i~GDiHGq~~------------DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~----i~LL~a~K--------- 114 (331)
T KOG0374|consen 60 PVKIVGDIHGQFG------------DLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLET----ICLLFALK--------- 114 (331)
T ss_pred CEEEEccCcCCHH------------HHHHHHHhcCCCCCcccEEEecccccCCccceEE----eehhhhhh---------
Confidence 4788999997653 23333333331113 3468899999999877664 33333221
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004713 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (734)
Q Consensus 93 ~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~I~GNHD~p~ 132 (734)
+ ...--||.+.|||....
T Consensus 115 ---------------i-------~yp~~~~lLRGNHE~~~ 132 (331)
T KOG0374|consen 115 ---------------I-------KYPENVFLLRGNHECAS 132 (331)
T ss_pred ---------------h-------hCCceEEEecccccccc
Confidence 1 12456999999999864
No 141
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=35.66 E-value=45 Score=36.90 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=13.9
Q ss_pred hcCCCEEEEcCCCCCCCCCC
Q 004713 49 QKEVDFVLLGGDLFHENKPS 68 (734)
Q Consensus 49 e~~VD~VLiaGDLFd~~kPs 68 (734)
..++|+ +++|||.+..-++
T Consensus 70 ~~dId~-~~aGDLlnQ~i~s 88 (329)
T PF07451_consen 70 KEDIDY-LFAGDLLNQIISS 88 (329)
T ss_dssp GGG-SE-EEEEETTCCCCHH
T ss_pred HHHCeE-EEehhhhhhhHHH
Confidence 568996 7899999887543
No 142
>PRK15005 universal stress protein F; Provisional
Probab=35.17 E-value=83 Score=29.16 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q 004713 40 FEEICSIAEQKEVDFVLLG 58 (734)
Q Consensus 40 FeeIl~~A~e~~VD~VLia 58 (734)
.+.|++.|.++++|+|+++
T Consensus 96 ~~~I~~~a~~~~~DLIV~G 114 (144)
T PRK15005 96 KDRILELAKKIPADMIIIA 114 (144)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 4667888888888888875
No 143
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=35.16 E-value=1.3e+02 Score=26.13 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCC
Q 004713 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVG 118 (734)
Q Consensus 39 aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~ 118 (734)
...++++.+..+.+|+|++-.++.+.+ ...+++.|++. ...
T Consensus 31 ~~~~~~~~~~~~~~d~iiid~~~~~~~------~~~~~~~i~~~---------------------------------~~~ 71 (112)
T PF00072_consen 31 SGEEALELLKKHPPDLIIIDLELPDGD------GLELLEQIRQI---------------------------------NPS 71 (112)
T ss_dssp SHHHHHHHHHHSTESEEEEESSSSSSB------HHHHHHHHHHH---------------------------------TTT
T ss_pred CHHHHHHHhcccCceEEEEEeeecccc------ccccccccccc---------------------------------ccc
Confidence 356778888899999999998887743 23455555543 247
Q ss_pred CcEEEEcCCCCC
Q 004713 119 LPVFSIHGNHDD 130 (734)
Q Consensus 119 IPVf~I~GNHD~ 130 (734)
+|++++..++|.
T Consensus 72 ~~ii~~t~~~~~ 83 (112)
T PF00072_consen 72 IPIIVVTDEDDS 83 (112)
T ss_dssp SEEEEEESSTSH
T ss_pred ccEEEecCCCCH
Confidence 899999977774
No 144
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=34.65 E-value=41 Score=39.04 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHh
Q 004713 45 SIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (734)
Q Consensus 45 ~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l 82 (734)
..+++.-||-+=+.||+||.. |-+. ..|+-|-.|
T Consensus 184 ~~iqrLvVDhLHiVGDIyDRG-P~pd---~Imd~L~~y 217 (648)
T COG3855 184 YLIQRLVVDHLHIVGDIYDRG-PYPD---KIMDTLINY 217 (648)
T ss_pred HHHHHHhhhheeeecccccCC-CCch---HHHHHHhhc
Confidence 345677899999999999987 4433 355655544
No 145
>PF15231 VCX_VCY: Variable charge X/Y family
Probab=34.23 E-value=31 Score=33.19 Aligned_cols=37 Identities=38% Similarity=0.480 Sum_probs=20.4
Q ss_pred ccCCccccccccccCCCccccCCccCcCCCCCCCCCcCCCC
Q 004713 558 TRGRKWSSAASRSSRGALESDKSKTSTRGRGRGRGRGRGRG 598 (734)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (734)
||-||+||.++.|+- +- -.|.-.+||...+||||-++
T Consensus 17 trKrKsssq~~ps~P---kk-~~k~~kkGKa~~ggRg~KK~ 53 (147)
T PF15231_consen 17 TRKRKSSSQPSPSSP---KK-TPKVAKKGKAGRGGRGGKKR 53 (147)
T ss_pred cccccccCCCCCCCC---cc-ccchhhccccccCccccccc
Confidence 567787776655432 22 33344556666666655544
No 146
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.62 E-value=1.5e+02 Score=33.51 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhH
Q 004713 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71 (734)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~t 71 (734)
...+--++|.|+.++-.. -++.++|++.+++.++| |++||=-|+-.+-..-|
T Consensus 48 ~eIv~TiiCGDnyf~en~---------eea~~~i~~mv~~~~pD-~viaGPaFnagrYG~ac 99 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENK---------EEALKKILEMVKKLKPD-VVIAGPAFNAGRYGVAC 99 (349)
T ss_pred CEEEEEEEECcchhhhCH---------HHHHHHHHHHHHhcCCC-EEEEcCCcCCchHHHHH
Confidence 344566788888776332 34778999999999999 58899999987654443
No 147
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=29.34 E-value=44 Score=34.57 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=22.1
Q ss_pred CCCEEEeCcccccccCCeecCCCCceEecCCCCc
Q 004713 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (734)
Q Consensus 245 ~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v 278 (734)
+.|+|+.||+|...+ .... +..++.|||..
T Consensus 179 ~~~~vv~GHTh~~~~--~~~~--~~i~IDtGs~~ 208 (218)
T PRK09968 179 GADYFIFGHMMFDNI--QTFA--NQIYIDTGSPK 208 (218)
T ss_pred CCCEEEECCCCcCcc--eeEC--CEEEEECCCCC
Confidence 468999999998754 2333 36889999854
No 148
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=29.17 E-value=1.5e+02 Score=31.28 Aligned_cols=55 Identities=29% Similarity=0.400 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCC
Q 004713 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (734)
Q Consensus 40 FeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~I 119 (734)
.+++...|.+...|+|+++|=.-- + .++..+++++++.+ . .+
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v----~-~~~~~~~~~ik~~~--------------------------------~-~~ 55 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV----S-STLDNVVRLIKRIR--------------------------------R-PV 55 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch----h-hhHHHHHHHHHHhc--------------------------------C-CC
Confidence 345566677788999999997522 1 35667778887752 2 59
Q ss_pred cEEEEcCCCCCCC
Q 004713 120 PVFSIHGNHDDPA 132 (734)
Q Consensus 120 PVf~I~GNHD~p~ 132 (734)
||+.-|||++.-+
T Consensus 56 Pvilfp~~~~~i~ 68 (219)
T cd02812 56 PVILFPSNPEAVS 68 (219)
T ss_pred CEEEeCCCccccC
Confidence 9999999999653
No 149
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=27.11 E-value=47 Score=33.73 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=21.9
Q ss_pred CCCEEEeCcccccccCCeecCCCCceEecCCCCc
Q 004713 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (734)
Q Consensus 245 ~~DyVa~GH~H~~~i~Pq~~~~~~~~I~yPGS~v 278 (734)
+.++|+.||+|.+.+. ... +..++.|||..
T Consensus 168 ~~~~iV~GHTh~~~~~--~~~--~~i~ID~Gsv~ 197 (207)
T cd07424 168 GVDAVVHGHTPVKRPL--RLG--NVLYIDTGAVF 197 (207)
T ss_pred CCCEEEECCCCCCcce--EEC--CEEEEECCCCC
Confidence 3589999999997643 333 35788999863
No 150
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=27.10 E-value=1.7e+02 Score=25.82 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC
Q 004713 39 AFEEICSIAEQKEVDFVLLGGDL 61 (734)
Q Consensus 39 aFeeIl~~A~e~~VD~VLiaGDL 61 (734)
..++|++.+.+.++|+|+++--=
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~~ 112 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSRG 112 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSS
T ss_pred cchhhhhccccccceeEEEeccC
Confidence 56899999999999999998764
No 151
>PRK10116 universal stress protein UspC; Provisional
Probab=26.91 E-value=1.6e+02 Score=27.25 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCCEEEEcC
Q 004713 40 FEEICSIAEQKEVDFVLLGG 59 (734)
Q Consensus 40 FeeIl~~A~e~~VD~VLiaG 59 (734)
.+.|++.|.+.++|+|+++-
T Consensus 91 ~~~I~~~a~~~~~DLiV~g~ 110 (142)
T PRK10116 91 SEHILEVCRKHHFDLVICGN 110 (142)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 45566677777777766643
No 152
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=26.45 E-value=1.8e+02 Score=29.53 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.9
Q ss_pred CCCCcEEEEcCCCCCCCCCC
Q 004713 116 NVGLPVFSIHGNHDDPAGVD 135 (734)
Q Consensus 116 n~~IPVf~I~GNHD~p~g~~ 135 (734)
...+|+++|--+||...+.+
T Consensus 87 ~~~~p~~~iwDDHDi~~n~~ 106 (228)
T cd07389 87 LAQVPTIGIWDDHDIGDNWG 106 (228)
T ss_pred hhcCCEEEeccccccccccc
Confidence 35789999999999865543
No 153
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=25.92 E-value=2.3e+02 Score=28.13 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=22.3
Q ss_pred hcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCC
Q 004713 34 HDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHE 64 (734)
Q Consensus 34 ~Ds~~aFeeIl~~A~e-~~VD~VLiaGDLFd~ 64 (734)
.|..+.+.+.++.+.+ .++|+||.+|=.=-.
T Consensus 45 ~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g 76 (163)
T TIGR02667 45 KDDIYQIRAQVSAWIADPDVQVILITGGTGFT 76 (163)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 4556667777776653 689999999986433
No 154
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=25.45 E-value=1.7e+02 Score=31.17 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=34.6
Q ss_pred HHHHhcCCCEEEEcCCC-CCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEE
Q 004713 45 SIAEQKEVDFVLLGGDL-FHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFS 123 (734)
Q Consensus 45 ~~A~e~~VD~VLiaGDL-Fd~~kPs~~tl~~~~~lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNy~dpn~n~~IPVf~ 123 (734)
+.+.+...|+|+++|=+ .. ...+..++..+++ ..+||+.
T Consensus 26 ~~~~~~gtdai~vGGS~~vt-----~~~~~~~v~~ik~-----------------------------------~~lPvil 65 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVT-----EENVDELVKAIKE-----------------------------------YDLPVIL 65 (232)
T ss_pred HHHHhcCCCEEEEcCCCccc-----hHHHHHHHHHHhc-----------------------------------CCCCEEE
Confidence 56677899999999975 33 2334455555554 3699999
Q ss_pred EcCCCCCCC
Q 004713 124 IHGNHDDPA 132 (734)
Q Consensus 124 I~GNHD~p~ 132 (734)
-|||++.-+
T Consensus 66 fp~~~~~i~ 74 (232)
T PRK04169 66 FPGNIEGIS 74 (232)
T ss_pred eCCCccccC
Confidence 999999754
No 155
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=23.64 E-value=99 Score=33.61 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=40.0
Q ss_pred CCceEEEEEcCCC-CCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC--CCCCCChhHHHHHHHHHHHhc
Q 004713 10 ANTVRILVATDCH-LGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKAIEILRRHC 83 (734)
Q Consensus 10 ~~~mRILh~SD~H-LG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGDLF--d~~kPs~~tl~~~~~lLr~l~ 83 (734)
....+|+|+||.- .. +++.++...+.+||+++++|=.. =..+-....+..+++-|+++.
T Consensus 174 dg~~~i~faSDvqGp~---------------~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii 235 (304)
T COG2248 174 DGKSSIVFASDVQGPI---------------NDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERII 235 (304)
T ss_pred cCCeEEEEcccccCCC---------------ccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHH
Confidence 3457899999987 33 24666677788999999999743 111233456677777777753
No 156
>PF05904 DUF863: Plant protein of unknown function (DUF863); InterPro: IPR008581 This family consists of a number of hypothetical proteins from plants. The function of this family is unknown.
Probab=23.11 E-value=35 Score=42.11 Aligned_cols=13 Identities=38% Similarity=0.348 Sum_probs=7.3
Q ss_pred cccccccCCcccc
Q 004713 546 EDTTQISDTKSAT 558 (734)
Q Consensus 546 ~~~~~~~~~~~~~ 558 (734)
||.+-+-|.--|+
T Consensus 714 EDlq~igGl~rat 726 (805)
T PF05904_consen 714 EDLQTIGGLMRAT 726 (805)
T ss_pred HHHHHHHHHHhhc
Confidence 3555566555555
No 157
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.35 E-value=4.6e+02 Score=24.40 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004713 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (734)
Q Consensus 39 aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~ 81 (734)
..+++++.|.+.++|+|++++-.-+ ....+...++.|++
T Consensus 38 p~e~~~~~a~~~~~d~V~iS~~~~~----~~~~~~~~~~~L~~ 76 (122)
T cd02071 38 TPEEIVEAAIQEDVDVIGLSSLSGG----HMTLFPEVIELLRE 76 (122)
T ss_pred CHHHHHHHHHHcCCCEEEEcccchh----hHHHHHHHHHHHHh
Confidence 3578999999999999999987532 23333444555544
No 158
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.31 E-value=2.1e+02 Score=24.83 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCC
Q 004713 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60 (734)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLiaGD 60 (734)
..||||++.--+.. | +..+...|+.+.+..++++|+.|.
T Consensus 2 ~g~rVli~GgR~~~----D-------~~~i~~~Ld~~~~~~~~~~lvhGg 40 (71)
T PF10686_consen 2 EGMRVLITGGRDWT----D-------HELIWAALDKVHARHPDMVLVHGG 40 (71)
T ss_pred CCCEEEEEECCccc----c-------HHHHHHHHHHHHHhCCCEEEEECC
Confidence 56899999865543 1 334556677777778999988874
No 159
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.31 E-value=3e+02 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHh
Q 004713 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (734)
Q Consensus 39 aFeeIl~~A~e~~VD~VLiaGDLFd~~kPs~~tl~~~~~lLr~l 82 (734)
.-+++++.|+++++|+|.+++=+.+. ...+.++++.|++.
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~----~~~~~~~~~~l~~~ 77 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHG----EIDCKGLREKCDEA 77 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCC----HHHHHHHHHHHHHC
Confidence 45899999999999999998765543 34456677777763
No 160
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.36 E-value=3.4e+02 Score=26.09 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCC
Q 004713 38 EAFEEICSIAEQKEVDFVLLGGDLF 62 (734)
Q Consensus 38 ~aFeeIl~~A~e~~VD~VLiaGDLF 62 (734)
.+-+++++.|.++++|+|.+++=+-
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~ 64 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAG 64 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchh
Confidence 4568999999999999999998653
No 161
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.58 E-value=3.6e+02 Score=28.37 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=42.9
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChhHHHHHHHHHHHhc
Q 004713 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLVKAIEILRRHC 83 (734)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLi-aGDLFd~~kPs~~tl~~~~~lLr~l~ 83 (734)
.+.|...+-..++....++..+.+.+..|..+++.|.+.++++|++ .|-. ...+.......+++.|++++
T Consensus 59 ~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~--~~~~~~~~~~~~~~~l~~l~ 129 (279)
T cd00019 59 SICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSY--LGQSKEEGLKRVIEALNELI 129 (279)
T ss_pred CCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHHHH
Confidence 3445443333233333344567788999999999999999998766 4421 11233445556666777654
No 162
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=20.21 E-value=3.2e+02 Score=30.49 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCC
Q 004713 38 EAFEEICSIAEQKEVDFVLLGGDLFH 63 (734)
Q Consensus 38 ~aFeeIl~~A~e~~VD~VLiaGDLFd 63 (734)
..+.++.++..+++||+||+.||-|.
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~ 105 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFE 105 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchH
Confidence 34567777778999999999999663
Done!