Your job contains 1 sequence.
>004714
MDSSSLEGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGK
ERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLP
VPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTC
SSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQL
VVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRG
IVNRLSSGPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVV
LGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG
TTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPND
AQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSH
VQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQA
RNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWL
ECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRR
SSVVPAGFCMKLWH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004714
(734 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2173004 - symbol:VIN3 "VERNALIZATION INSENSITI... 809 1.9e-136 3
TAIR|locus:2128946 - symbol:VEL1 "vernalization5/VIN3-lik... 1138 1.9e-115 1
TAIR|locus:2044405 - symbol:VEL2 "AT2G18880" species:3702... 664 1.0e-103 3
TAIR|locus:2094859 - symbol:VRN5 "AT3G24440" species:3702... 578 1.5e-81 2
TAIR|locus:2044500 - symbol:VEL3 "AT2G18870" species:3702... 233 1.8e-18 1
TAIR|locus:2087403 - symbol:TTA2 "TITANIA 2" species:3702... 142 1.0e-05 1
UNIPROTKB|Q84N38 - symbol:PVIP "OBERON-like protein" spec... 122 0.00011 2
>TAIR|locus:2173004 [details] [associations]
symbol:VIN3 "VERNALIZATION INSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0010048 "vernalization response"
evidence=IEP] [GO:0001666 "response to hypoxia" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001965
InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50016 PROSITE:PS50853
SMART:SM00060 SMART:SM00249 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 SUPFAM:SSF49265
GO:GO:0008270 GO:GO:0001666 GO:GO:0006351 PROSITE:PS01359
GO:GO:0010048 EMBL:AB016891 InterPro:IPR004082 Pfam:PF07227
EMBL:AY446960 IPI:IPI00545823 RefSeq:NP_200548.2 UniGene:At.22442
UniGene:At.66759 ProteinModelPortal:Q9FIE3 SMR:Q9FIE3
DIP:DIP-48611N IntAct:Q9FIE3 STRING:Q9FIE3
EnsemblPlants:AT5G57380.1 GeneID:835844 KEGG:ath:AT5G57380
TAIR:At5g57380 eggNOG:NOG263359 HOGENOM:HOG000238791 OMA:CCENLAC
PhylomeDB:Q9FIE3 ProtClustDB:CLSN2925621 Genevestigator:Q9FIE3
Uniprot:Q9FIE3
Length = 620
Score = 809 (289.8 bits), Expect = 1.9e-136, Sum P(3) = 1.9e-136
Identities = 175/353 (49%), Positives = 227/353 (64%)
Query: 139 IYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLE 198
I C+N ACRA L +D FC+RCSCCIC+K+DDNKDPSLWLTC D+CG SCHLE
Sbjct: 128 ICCENLACRAALGCDDTFCRRCSCCICQKFDDNKDPSLWLTC--------DACGSSCHLE 179
Query: 199 CALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSL 258
C LK +R GIG D LDG FYC C K NDLLGCW+KQ+ VAK TRRVD+LCYRLSL
Sbjct: 180 CGLKQDRYGIGSD----DLDGRFYCAYCGKDNDLLGCWRKQVKVAKETRRVDVLCYRLSL 235
Query: 259 GQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACA 318
GQKL+ T KY+NL +++D+AVK LE +VGPL+G +KM RGIVNRLSSG VQKLC+ A
Sbjct: 236 GQKLLRGTTKYRNLLELMDEAVKKLEGDVGPLSGWAMKMARGIVNRLSSGVHVQKLCSQA 295
Query: 319 VESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGN---IISYT 375
+E+LDK++S P+ SV G + V+ E+++A S+TV + SE+PS I +
Sbjct: 296 MEALDKVVS----PSESVSGQGDKMT--VRVEEIQARSVTVRVDSEEPSSSTQNKITGFR 349
Query: 376 LWHRRAH-EGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTG 434
L+ R++ E ++ C ++ P T + GL P TE+ +VVS N +L E+ F+T
Sbjct: 350 LFCRKSKDEECSSQGNCVVYLPETTSAIQGLEPDTEFCLRVVSFNEEGDLDESELRFTT- 408
Query: 435 SSRDEVTNCSVIERSQSPATNCSS--LSNPSSVEDETNNVTPDRDPNDAQVNN 485
+D+ QSP TN SS SNPS EDE+NNV + +N
Sbjct: 409 -LKDDGDEAG---DQQSPLTNSSSGLCSNPSLPEDESNNVNKSCSKGNGDKDN 457
Score = 332 (121.9 bits), Expect = 1.9e-136, Sum P(3) = 1.9e-136
Identities = 70/152 (46%), Positives = 103/152 (67%)
Query: 593 EILKDAQARNGRSKLNSKDMENGTGNRD--EPQDGSTSKKRS-----SESRDEDCTANGL 645
E+ ++ + +K++ +D+ RD + + G + +S +E + + ANG+
Sbjct: 469 ELEEERLVKRKANKIDGRDLLVTPCKRDIYKGKQGGNKRFKSRTVSLNEKPEINNAANGV 528
Query: 646 SDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLA 705
D D H VK IR LE EGHI+++FR++FLTWYSLRAT +EVR+VK+FV+TF+ED +SL
Sbjct: 529 GDKDLGHIVKTIRCLEEEGHIDKSFRERFLTWYSLRATHREVRVVKIFVETFMEDLSSLG 588
Query: 706 EQLMDTFSDCISSRRSS---VVPAGFCMKLWH 734
+QL+DTFS+ I S+RSS VVPAG C+KLWH
Sbjct: 589 QQLVDTFSESILSKRSSTNGVVPAGICLKLWH 620
Score = 231 (86.4 bits), Expect = 1.9e-136, Sum P(3) = 1.9e-136
Identities = 49/88 (55%), Positives = 64/88 (72%)
Query: 1 MDSSSLE-GVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELG 59
MDSSS E ++ K + L++ E+REL++ LS Q ASE L SW+R EI++I+CAE+G
Sbjct: 21 MDSSSFEDNECIETCKPNVLNVSERRELIHALSNQPEEASELLNSWSRNEIMKIICAEMG 80
Query: 60 KERKYTGLTKLKIIENLLKLVSEKKSGE 87
KERKYTGL K K+IENLL LVS + GE
Sbjct: 81 KERKYTGLNKPKLIENLLNLVS-RPLGE 107
Score = 83 (34.3 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 46/206 (22%), Positives = 85/206 (41%)
Query: 433 TGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQVNNYYTYSKE 492
+ S+++++T + R +S CSS N ET + +P+ ++++E
Sbjct: 338 SSSTQNKITGFRLFCR-KSKDEECSSQGNCVVYLPETTSAIQGLEPDTEFCLRVVSFNEE 396
Query: 493 TD----KIASTNLCDDAIDC----TVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQKL 544
D ++ T L DD + + L ++ + L E+ +NN++ S + K
Sbjct: 397 GDLDESELRFTTLKDDGDEAGDQQSPLTNSSSGLCSNPSLPEDESNNVNKSCSKGNGDKD 456
Query: 545 ESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEA-GLPITPCKIEILKDAQARNG 603
++H G + E+ + V ++ L +TPCK +I K Q N
Sbjct: 457 NTEHCSAGEVESELEEERLVKRKA----------NKIDGRDLLVTPCKRDIYKGKQGGNK 506
Query: 604 RSK-----LNSK----DMENGTGNRD 620
R K LN K + NG G++D
Sbjct: 507 RFKSRTVSLNEKPEINNAANGVGDKD 532
Score = 45 (20.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 32/151 (21%), Positives = 66/151 (43%)
Query: 513 RGTTP-ADAVSLLDEERANNIDGSMPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTG 571
RGTT + + L+DE ++G + ++ G I+ +S+ V
Sbjct: 241 RGTTKYRNLLELMDEA-VKKLEGDVGPLSGWAMKMAR---G-IVNRLSSGVHVQKLCSQA 295
Query: 572 MECVPYMRSLEAGLPITPCKIEI-LKDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKK 630
ME + + S + K+ + +++ QAR+ +++S++ + T N+ G
Sbjct: 296 MEALDKVVSPSESVSGQGDKMTVRVEEIQARSVTVRVDSEEPSSSTQNKIT---GFRLFC 352
Query: 631 RSSESRDEDCTANGLSDMDFEHCVKVIRWLE 661
R +S+DE+C++ G + I+ LE
Sbjct: 353 R--KSKDEECSSQGNCVVYLPETTSAIQGLE 381
>TAIR|locus:2128946 [details] [associations]
symbol:VEL1 "vernalization5/VIN3-like 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA;IPI] [GO:0031519 "PcG protein complex"
evidence=IDA] [GO:0035064 "methylated histone residue binding"
evidence=IDA] [GO:0048587 "regulation of short-day photoperiodism,
flowering" evidence=IMP] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0007155 "cell adhesion" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010090
"trichome morphogenesis" evidence=RCA] [GO:0016926 "protein
desumoylation" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048765 "root hair cell differentiation"
evidence=RCA] [GO:0050665 "hydrogen peroxide biosynthetic process"
evidence=RCA] [GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50853 SMART:SM00060
GO:GO:0009506 Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:CP002687
SUPFAM:SSF49265 EMBL:AL161576 GO:GO:0010228 GO:GO:0035064
GO:GO:0031519 InterPro:IPR004082 Pfam:PF07227 EMBL:AL109796
HOGENOM:HOG000238791 EMBL:EF064792 EMBL:AB050977 IPI:IPI00545759
PIR:T14080 RefSeq:NP_194749.1 UniGene:At.21785
ProteinModelPortal:Q9SUM4 SMR:Q9SUM4 DIP:DIP-48609N STRING:Q9SUM4
PRIDE:Q9SUM4 EnsemblPlants:AT4G30200.2 GeneID:829143
KEGG:ath:AT4G30200 TAIR:At4g30200 InParanoid:Q9SUM4 OMA:NHQSPAK
PhylomeDB:Q9SUM4 ProtClustDB:CLSN2685612 Genevestigator:Q9SUM4
GO:GO:0048587 Uniprot:Q9SUM4
Length = 714
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 286/657 (43%), Positives = 378/657 (57%)
Query: 1 MDSSSLEGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGK 60
MDSS L+G A D SKCS++S++EKR+LVY+LSKQSH A+E L++W+RQEILQILCAE+GK
Sbjct: 1 MDSS-LDGAAGDSSKCSEMSVDEKRQLVYELSKQSHLAAEVLQAWSRQEILQILCAEMGK 59
Query: 61 ERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEXXXXXXXXXXXXXXXXXNDNPARLP 120
ERKYTGLTK+KIIE LLK+VSEK SGE E K + DNP+R
Sbjct: 60 ERKYTGLTKVKIIETLLKIVSEKNSGECEGK---KRDSDCLPIQRNTKRQRKVDNPSRYV 116
Query: 121 VPVTDAAMNN--SGS-DLVNA------IYCKNSACRATLRKEDVFCKRCSCCICRKYDDN 171
+P T+ +N SGS VN IYCKN ACRA LR+ED FC+RCSCCICRKYDDN
Sbjct: 117 IPATNIVTSNNASGSCSSVNTKGESTTIYCKNLACRAVLRQEDSFCRRCSCCICRKYDDN 176
Query: 172 KDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVND 231
KDPSLWLTCSS+PPF G+SCG SCHLECA E+SG+GKD+ G FYC+SC K N
Sbjct: 177 KDPSLWLTCSSDPPFEGESCGFSCHLECAFNTEKSGLGKDKQSEGC--CFYCVSCGKANS 234
Query: 232 LLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLT 291
LL CWKKQL +AK TRRV++LCYRL L QKL+ ++ KY+NL ++VD+AVK LE +VGPLT
Sbjct: 235 LLECWKKQLTIAKETRRVEVLCYRLFLVQKLLKSSTKYRNLCEVVDEAVKTLEADVGPLT 294
Query: 292 GLPVKMGRGIVNRLSSGPEVQKLCACAVESLDKMISN----TILPNPSV----QGSNVIV 343
GLP+KMGRGIVNRL SGP+VQKLC+ A+ESL+ + + LP+P Q + ++
Sbjct: 295 GLPMKMGRGIVNRLHSGPDVQKLCSSALESLETIATTPPDVAALPSPRSSKMQQDCSYVL 354
Query: 344 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFA------PN 397
N + + AT+ + + ED N S T+ A P+ P ++ P
Sbjct: 355 SNEISADT--ATTGSTKIRFEDV---NATSLTVV--LASNEIPSPPNIVHYSIWHRKVPE 407
Query: 398 TRFVVTGLCPATEYQFKVVSSNGTTELGRC-EIWFSTGSSRDEVTNCSVIERSQSPATNC 456
+ C + V S C ++ +G+ V +V+ RS NC
Sbjct: 408 KDYPEKSTCTLFIPNTRFVVSGLAPASEYCFKVVSYSGTREMGVDEINVLTRSAEEGANC 467
Query: 457 SSLSNPSSVEDETNNVTPDRDPN--DAQVNNYYTYSKE-TDKIASTNLCDDAIDCTVLGR 513
SS SV TN T +P+ +A+ NN Y K+ + K N ++D + R
Sbjct: 468 SSAVE-RSVSPLTNCSTLSSNPSSVEAESNNDYIVPKKPSSKNEDNN--SPSVDESAAKR 524
Query: 514 --GTTPADAVSL-LDEERANNIDGSMPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPT 570
TT +D V + D E+ +D ++ + K ES+ P V T
Sbjct: 525 MKRTTDSDIVQIEKDVEQIVLLDDEEQEAVLDKTESETPV-----------------VVT 567
Query: 571 GMECVPYMRSLEAGLPITPCKIEILKDAQARNGRSKLNSKDMENGTGNRDEPQDGST 627
V S +A LPITP + + +K+ QAR +++ KD N N D +G T
Sbjct: 568 TKSLVGNRNSSDASLPITPFRSDEIKNRQAR---IEISMKDNCN---NGDHSANGGT 618
Score = 367 (134.2 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 95/273 (34%), Positives = 147/273 (53%)
Query: 487 YTYSKE--TDKI-ASTNLCDDAIDCT-VLGRGTTPADAVSLLDE-----ERANNIDGSMP 537
Y+ ++E D+I T ++ +C+ + R +P S L E +N D +P
Sbjct: 443 YSGTREMGVDEINVLTRSAEEGANCSSAVERSVSPLTNCSTLSSNPSSVEAESNNDYIVP 502
Query: 538 DSHVQKLESKHPP--EGRIIEEM--STDNGVDTPVPTGMECVPYM--RSLEAGLPITPCK 591
K E + P + + M +TD+ + + +E + + EA L T +
Sbjct: 503 KKPSSKNEDNNSPSVDESAAKRMKRTTDSDI-VQIEKDVEQIVLLDDEEQEAVLDKTESE 561
Query: 592 IEILKDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESR--DEDCTANGLSDMD 649
++ ++ G + + DE ++ + S + + D +ANG ++
Sbjct: 562 TPVVVTTKSLVGNRNSSDASLPITPFRSDEIKNRQARIEISMKDNCNNGDHSANGGTESG 621
Query: 650 FEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLM 709
EHCVK+IR LEC GHI++NFRQKFLTWYSLRAT QE+R+VK+F+DTF++DP +LAEQL+
Sbjct: 622 LEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDTFIDDPMALAEQLI 681
Query: 710 DTFSDCISSRRSSV--------VPAGFCMKLWH 734
DTF D +S +RS+V VP+GFCMKLWH
Sbjct: 682 DTFDDRVSIKRSAVGGSGASAVVPSGFCMKLWH 714
>TAIR|locus:2044405 [details] [associations]
symbol:VEL2 "AT2G18880" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50853
SMART:SM00060 Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:CP002685
HOGENOM:HOG000238791 EMBL:AY924744 IPI:IPI00549070
RefSeq:NP_179478.4 UniGene:At.39929 ProteinModelPortal:Q5BPT4
EnsemblPlants:AT2G18880.1 GeneID:816404 KEGG:ath:AT2G18880
TAIR:At2g18880 OMA:CNEIREL PhylomeDB:Q5BPT4 ProtClustDB:CLSN2927364
Genevestigator:Q5BPT4 Uniprot:Q5BPT4
Length = 529
Score = 664 (238.8 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
Identities = 146/332 (43%), Positives = 204/332 (61%)
Query: 139 IYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLE 198
+YC+N AC+ LR+E FCKRCSCCIC KYDDNKDPSLWLTC+S+ F G+SCG+SCHL
Sbjct: 117 MYCQNLACQNKLREEATFCKRCSCCICFKYDDNKDPSLWLTCNSDSQFDGESCGLSCHLN 176
Query: 199 CALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSL 258
CA +E+SG+ +D S +DG F C+SC K N + C KKQL++A RRV + CYR+ L
Sbjct: 177 CAFDSEKSGLKEDTPSSDIDGCFNCVSCGKTNSKIECLKKQLIIANEERRVGVFCYRILL 236
Query: 259 GQKLVNATEKYKNLSKIVDDAVKMLEDEVG-PLTGLPVKMGRGIVNRLSSGPEVQKLCAC 317
KL+ T+KY +S+ V+ AV L++E G P++ LP KM RG+VNRL +V+K C+
Sbjct: 237 AHKLLKGTKKYIIVSEEVEKAVMHLKNEFGVPISCLPSKMSRGLVNRLCCAEKVKKHCSS 296
Query: 318 AVESLDKMISNTILPNPS-VQGSNVIVPNMVKFEDVRATSLTVVLGSEDP-SPGNIISYT 375
A++ LD LP PS +QGS I + E V ATS+T + +E+ S G+ Y
Sbjct: 297 ALKELDG------LPLPSTIQGSMKI-----RIESVLATSVTFDIEAEESFSWGDTNHYR 345
Query: 376 LWHRRAHEGFPARP-TCTLFAPNT--RFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFS 432
+ +R+ E ++ T LF+ ++ RF V L PATEY FK+VS +G EL E S
Sbjct: 346 MVYRKVSEKHSSKDLTRELFSTSSHQRFTVMELTPATEYWFKIVSFSGVEELSVDEFIVS 405
Query: 433 TGSSRDEVTNCSVIERSQSPATNCSSLSNPSS 464
T + +DE + + + S N + + S
Sbjct: 406 TKTLQDE--EVAAVLLNMSNCNNANKMEKSGS 435
Score = 236 (88.1 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 643 NGLSDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPA 702
+G FE CV +IR LEC G ++ +FR+KFLTWY L+AT +E +V++FVDTF +D
Sbjct: 433 SGSCSFGFEECVNLIRQLECSGQVKSDFRKKFLTWYCLKATDKEKHVVEIFVDTFKDDKE 492
Query: 703 SLAEQLMDTFSDCISSRRSSV 723
+LA+QL+DTFSDCI+ + +
Sbjct: 493 ALAKQLIDTFSDCITRKHPEI 513
Score = 161 (61.7 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 7 EGVALDPSKCSKLSMEEKRELVYQLSKQSHSA-SETLRSWTRQEILQILCAELGKERKYT 65
+G A D SK+S +++R+LV +LSK+S E L+ W+ EI ++L AE K+ KYT
Sbjct: 6 KGAAGDSMGSSKMSFDQRRQLVLKLSKESEREFKEVLKDWSCNEIRELLRAESKKDIKYT 65
Query: 66 GLTKLKIIENLLKLVSEKKSGEREAK 91
GLTK +II L +VS+K + + E +
Sbjct: 66 GLTKDEIITRLFNIVSKKNTRDHEVE 91
>TAIR|locus:2094859 [details] [associations]
symbol:VRN5 "AT3G24440" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009909 "regulation of flower
development" evidence=IGI;RCA] [GO:0010048 "vernalization response"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IMP]
[GO:0016571 "histone methylation" evidence=RCA;IMP] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0009933 "meristem structural organization" evidence=RCA]
[GO:0010162 "seed dormancy process" evidence=RCA] [GO:0010182
"sugar mediated signaling pathway" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA]
InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50853 SMART:SM00060
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:2.60.40.10
InterPro:IPR013783 SUPFAM:SSF49265 GO:GO:0010048 GO:GO:0009909
GO:GO:0016571 EMBL:AP002048 InterPro:IPR004082 Pfam:PF07227
HOGENOM:HOG000238791 EMBL:EF064791 IPI:IPI00536359
RefSeq:NP_189087.1 UniGene:At.37527 ProteinModelPortal:Q9LHF5
SMR:Q9LHF5 DIP:DIP-48608N STRING:Q9LHF5 EnsemblPlants:AT3G24440.1
GeneID:822034 KEGG:ath:AT3G24440 TAIR:At3g24440 eggNOG:NOG319546
InParanoid:Q9LHF5 OMA:DEIEDSC PhylomeDB:Q9LHF5
ProtClustDB:CLSN2684509 Genevestigator:Q9LHF5 Uniprot:Q9LHF5
Length = 602
Score = 578 (208.5 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 127/298 (42%), Positives = 172/298 (57%)
Query: 128 MNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFG 187
++ G L ++ CKN++CRA + KED FCKRCSCC+C +D+NKDPSLWL C E
Sbjct: 36 VDGGGGCLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEKSDD 95
Query: 188 GDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTR 247
+ CG+SCH+ECA + + G+ LDG F C SC KV+ +LGCWKKQLV AK R
Sbjct: 96 VEFCGLSCHIECAFREVKVGVIALGNLMKLDGCFCCYSCGKVSQILGCWKKQLVAAKEAR 155
Query: 248 RVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSS 307
R D LCYR+ LG +L+N T ++ L +IV A MLEDEVGPL G + RGIV+RL
Sbjct: 156 RRDGLCYRIDLGYRLLNGTSRFSELHEIVRAAKSMLEDEVGPLDGPTARTDRGIVSRLPV 215
Query: 308 GPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKF--EDVRATSLTVVLGSED 365
VQ+LC A++ ++ +N G + +VP +F ED+ +T+ L E
Sbjct: 216 AANVQELCTSAIKKAGELSANA--------GRD-LVPAACRFHFEDIAPKQVTLRL-IEL 265
Query: 366 PSPG--NIISYTLWHRRAHEGFPARPTCTLFAP----NTRFVVTGLCPATEYQFKVVS 417
PS ++ Y LW+ + E P LF R V++ L P TEY F+VVS
Sbjct: 266 PSAVEYDVKGYKLWYFKKGE----MPEDDLFVDCSRTERRMVISDLEPCTEYTFRVVS 319
Score = 259 (96.2 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 57/132 (43%), Positives = 83/132 (62%)
Query: 597 DAQARNGRSKLNSKD---MENGTGNRDEPQDGSTSKKR-----SSESRDEDCTANGLSDM 648
D NGR K N+ D + +G+G+ D D ++KR S++S + +C ++ + D
Sbjct: 465 DDAVSNGRRK-NNNDCLVISDGSGD-DTGFDFLMTRKRKAISDSNDSENHECDSSSIDDT 522
Query: 649 DFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQL 708
E CVKVIRWLE EGHI+ FR +FLTW+S+ +T QE +V FV T +DP SLA QL
Sbjct: 523 -LEKCVKVIRWLEREGHIKTTFRVRFLTWFSMSSTAQEQSVVSTFVQTLEDDPGSLAGQL 581
Query: 709 MDTFSDCISSRR 720
+D F+D +S++R
Sbjct: 582 VDAFTDVVSTKR 593
>TAIR|locus:2044500 [details] [associations]
symbol:VEL3 "AT2G18870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002685 IPI:IPI00529096 RefSeq:NP_179477.2
UniGene:At.52817 EnsemblPlants:AT2G18870.1 GeneID:816402
KEGG:ath:AT2G18870 OMA:HLSSYGK Uniprot:F4IRH5
Length = 239
Score = 233 (87.1 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 44/76 (57%), Positives = 56/76 (73%)
Query: 648 MDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQ 707
+ E CVK+IR LEC G++E FRQKFLTW+SLRAT QE V F++ F +D +LAEQ
Sbjct: 142 LGLEQCVKIIRKLECSGYVESTFRQKFLTWFSLRATSQERNTVTTFMNAFNDDSMALAEQ 201
Query: 708 LMDTFSDCISSRRSSV 723
L+DTFSDCI S+ S +
Sbjct: 202 LVDTFSDCIWSKGSVI 217
>TAIR|locus:2087403 [details] [associations]
symbol:TTA2 "TITANIA 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0005515 "protein
binding" evidence=IPI] [GO:0001708 "cell fate specification"
evidence=IGI] [GO:0009880 "embryonic pattern specification"
evidence=IGI] [GO:0090421 "embryonic meristem initiation"
evidence=IGI] PROSITE:PS50016 GO:GO:0005634 GO:GO:0001708
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 EMBL:AL163818
PROSITE:PS01359 GO:GO:0009880 InterPro:IPR004082 Pfam:PF07227
PRINTS:PR01544 HOGENOM:HOG000239893 GO:GO:0090421 EMBL:BT005768
EMBL:AK228553 IPI:IPI00519092 IPI:IPI01018460 PIR:T49191
RefSeq:NP_191909.1 UniGene:At.24203 UniGene:At.69654
ProteinModelPortal:Q84TI3 STRING:Q84TI3 PaxDb:Q84TI3 PRIDE:Q84TI3
EnsemblPlants:AT3G63500.2 GeneID:825525 KEGG:ath:AT3G63500
TAIR:At3g63500 eggNOG:NOG264321 InParanoid:Q9LY65 OMA:SACMCLV
Genevestigator:Q84TI3 Uniprot:Q84TI3
Length = 1162
Score = 142 (55.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 39/158 (24%), Positives = 67/158 (42%)
Query: 146 CRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNE- 204
CR RK D FC C C +C +D + W+ C D C CH +C +K
Sbjct: 823 CRVCSRK-DGFCSACMCLVCSNFDMASNTCSWVGC--------DVCLHWCHTDCGIKESY 873
Query: 205 -RSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLV 263
R+GI + F+C++C +++ G K+ + + + C L K+
Sbjct: 874 IRNGINASGAPGMTEMQFHCVACNHPSEMFGFVKEVFLNFAREWKFERFCKELEYVNKIF 933
Query: 264 NATE--KYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGR 299
++++ + K L + D + L+ + L GLP R
Sbjct: 934 SSSKDSRGKQLRQAADAMLASLKSK---LIGLPEACNR 968
>UNIPROTKB|Q84N38 [details] [associations]
symbol:PVIP "OBERON-like protein" species:4100 "Nicotiana
benthamiana" [GO:0046740 "spread of virus in host, cell to cell"
evidence=ISS] InterPro:IPR001965 PROSITE:PS50016 SMART:SM00249
GO:GO:0007275 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
PROSITE:PS01359 GO:GO:0046740 InterPro:IPR004082 Pfam:PF07227
PIRSF:PIRSF025218 PRINTS:PR01544 EMBL:AY271742
ProteinModelPortal:Q84N38 Uniprot:Q84N38
Length = 549
Score = 122 (48.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 33/112 (29%), Positives = 48/112 (42%)
Query: 141 CKNSACRATLRKEDV----------FCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDS 190
C+N AC + L E+ FC C C IC K+D + W+ C D
Sbjct: 196 CRNIACGSMLPAEECSCEICAKKNGFCNLCMCVICYKFDFEVNSCRWIGC--------DL 247
Query: 191 CGMSCHLECALKNERSGIGKD--RCYSGLDGSFYCISCRKVNDLLGCWKKQL 240
C H +CA+ N + G G S + F C +C + ++LLG W K +
Sbjct: 248 CSHWTHTDCAISNGQIGTGPSVKNGASSAETLFRCHACSRTSELLG-WVKDV 298
Score = 53 (23.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 11 LDPSKCSKLSMEEKRELVYQLSKQSHSASETLR-SWTRQEILQILCAELGKERKYTGLTK 69
+ P C + +E+ Q ++ S S S + R +W + L + E KE YT +
Sbjct: 20 VSPDACGSPNPQERGSTSDQ-ARDSPSESASSRETWPTSDALMLKKLEKEKENGYTEHSV 78
Query: 70 LKIIENLLKLVSEKKSGER 88
++ I N K+ + ER
Sbjct: 79 VRNISNSDKMSLRDIARER 97
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 734 717 0.00084 121 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 629 (67 KB)
Total size of DFA: 397 KB (2191 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 72.22u 0.11s 72.33t Elapsed: 00:00:04
Total cpu time: 72.22u 0.11s 72.33t Elapsed: 00:00:04
Start: Thu May 9 16:31:38 2013 End: Thu May 9 16:31:42 2013