BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004714
(734 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3
PE=2 SV=2
Length = 620
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 226/480 (47%), Positives = 295/480 (61%), Gaps = 64/480 (13%)
Query: 1 MDSSSLE-GVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELG 59
MDSSS E ++ K + L++ E+REL++ LS Q ASE L SW+R EI++I+CAE+G
Sbjct: 21 MDSSSFEDNECIETCKPNVLNVSERRELIHALSNQPEEASELLNSWSRNEIMKIICAEMG 80
Query: 60 KERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARL 119
KERKYTGL K K+IENLL LVS P + S R + R+++ +
Sbjct: 81 KERKYTGLNKPKLIENLLNLVS-------------RPLGETSCSDRRNSRKKEKKMIGYI 127
Query: 120 PVPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLT 179
I C+N ACRA L +D FC+RCSCCIC+K+DDNKDPSLWLT
Sbjct: 128 -------------------ICCENLACRAALGCDDTFCRRCSCCICQKFDDNKDPSLWLT 168
Query: 180 CSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQ 239
C D+CG SCHLEC LK +R GIG D LDG FYC C K NDLLGCW+KQ
Sbjct: 169 C--------DACGSSCHLECGLKQDRYGIGSD----DLDGRFYCAYCGKDNDLLGCWRKQ 216
Query: 240 LVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGR 299
+ VAK TRRVD+LCYRLSLGQKL+ T KY+NL +++D+AVK LE +VGPL+G +KM R
Sbjct: 217 VKVAKETRRVDVLCYRLSLGQKLLRGTTKYRNLLELMDEAVKKLEGDVGPLSGWAMKMAR 276
Query: 300 GIVNRLSSGPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTV 359
GIVNRLSSG VQKLC+ A+E+LDK++S P+ SV G + V+ E+++A S+TV
Sbjct: 277 GIVNRLSSGVHVQKLCSQAMEALDKVVS----PSESVSGQGDKMT--VRVEEIQARSVTV 330
Query: 360 VLGSEDPSP---GNIISYTLWHRRAH-EGFPARPTCTLFAPNTRFVVTGLCPATEYQFKV 415
+ SE+PS I + L+ R++ E ++ C ++ P T + GL P TE+ +V
Sbjct: 331 RVDSEEPSSSTQNKITGFRLFCRKSKDEECSSQGNCVVYLPETTSAIQGLEPDTEFCLRV 390
Query: 416 VSSNGTTELGRCEIWFST-GSSRDEVTNCSVIERSQSPATNCSS--LSNPSSVEDETNNV 472
VS N +L E+ F+T DE + QSP TN SS SNPS EDE+NNV
Sbjct: 391 VSFNEEGDLDESELRFTTLKDDGDEAGD------QQSPLTNSSSGLCSNPSLPEDESNNV 444
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 98/153 (64%), Gaps = 23/153 (15%)
Query: 585 LPITPCKIEILKDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANG 644
L +TPCK +I K Q N R K + + +E + + ANG
Sbjct: 488 LLVTPCKRDIYKGKQGGNKRFKSRTVSL--------------------NEKPEINNAANG 527
Query: 645 LSDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASL 704
+ D D H VK IR LE EGHI+++FR++FLTWYSLRAT +EVR+VK+FV+TF+ED +SL
Sbjct: 528 VGDKDLGHIVKTIRCLEEEGHIDKSFRERFLTWYSLRATHREVRVVKIFVETFMEDLSSL 587
Query: 705 AEQLMDTFSDCISSRRSS---VVPAGFCMKLWH 734
+QL+DTFS+ I S+RSS VVPAG C+KLWH
Sbjct: 588 GQQLVDTFSESILSKRSSTNGVVPAGICLKLWH 620
>sp|Q84TI3|OBE4_ARATH Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2
Length = 1162
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 133 SDLVNAIYCKNSACRATL----------RKEDVFCKRCSCCICRKYDDNKDPSLWLTCSS 182
+++ + CKN +CR L ++D FC C C +C +D + W+ C
Sbjct: 799 AEIFMNMRCKNLSCRVLLPVDECDCRVCSRKDGFCSACMCLVCSNFDMASNTCSWVGC-- 856
Query: 183 EPPFGGDSCGMSCHLECALKNE--RSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQL 240
D C CH +C +K R+GI + F+C++C +++ G K+
Sbjct: 857 ------DVCLHWCHTDCGIKESYIRNGINASGAPGMTEMQFHCVACNHPSEMFGFVKEVF 910
Query: 241 VVAKNTRRVDILCYRLSLGQKLVNATE--KYKNLSKIVDDAVKMLEDEVGPLTGLP 294
+ + + C L K+ ++++ + K L + D ML L GLP
Sbjct: 911 LNFAREWKFERFCKELEYVNKIFSSSKDSRGKQLRQAAD---AMLASLKSKLIGLP 963
>sp|Q84N38|PVIP_NICBE OBERON-like protein OS=Nicotiana benthamiana GN=PVIP PE=1 SV=1
Length = 549
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 21/113 (18%)
Query: 141 CKNSACRATL----------RKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDS 190
C+N AC + L K++ FC C C IC K+D + W+ C D
Sbjct: 196 CRNIACGSMLPAEECSCEICAKKNGFCNLCMCVICYKFDFEVNSCRWIGC--------DL 247
Query: 191 CGMSCHLECALKNERSGIGKD--RCYSGLDGSFYCISCRKVNDLLGCWKKQLV 241
C H +CA+ N + G G S + F C +C + ++LLG W K +
Sbjct: 248 CSHWTHTDCAISNGQIGTGPSVKNGASSAETLFRCHACSRTSELLG-WVKDVF 299
>sp|Q94B71|OBE3_ARATH Protein OBERON 3 OS=Arabidopsis thaliana GN=OBE3 PE=1 SV=1
Length = 733
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 27/169 (15%)
Query: 139 IYCKNSACRATLRKEDV----------FCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGG 188
+ C+N C++ L +D FC C C +C ++D + W+ C
Sbjct: 406 LRCRNVNCKSLLPVDDCECKICSNNKGFCSSCMCPVCLRFDSASNTCSWVGC-------- 457
Query: 189 DSCGMSCHLECALKNERSGIGKDRCYSGLDGS----FYCISCRKVNDLLGCWKKQLVVAK 244
D C CH C + +++ I G G+ F+CI C +++ G K V
Sbjct: 458 DVCSHWCHAACGI--QKNLIKPGHSLKGQRGTTEMMFHCIGCAHKSEMFGFVKDVFVCCA 515
Query: 245 NTRRVDILCYRLSLGQKLVNATE--KYKNLSKIVDDAVKMLED-EVGPL 290
++ L L +K+ ++ K K L ++ VK LE ++ PL
Sbjct: 516 KNWGLETLIKELDCVRKVFRGSDDAKGKALHLKANEMVKKLESKQISPL 564
>sp|Q9LUB7|OBE2_ARATH Protein OBERON 2 OS=Arabidopsis thaliana GN=OBE2 PE=1 SV=1
Length = 574
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 141 CKNSACRATLRKEDV----------FCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDS 190
C+N AC+ L +D FC C C IC K+D + + W+ C D
Sbjct: 198 CRNIACQNQLPADDCYCDICTNRKGFCNLCMCTICNKFDFSVNTCRWIGC--------DL 249
Query: 191 CGMSCHLECALKNERSGIG---KDRCYSGLDGSFYCISCRKVNDLLGCWKKQLV 241
C H +CA+++ + G K+ + F C +C + ++LLG W K +
Sbjct: 250 CSHWTHTDCAIRDGQITTGSSAKNNTSGPGEIVFKCRACNRTSELLG-WVKDVF 302
>sp|Q9S736|OBE1_ARATH Protein OBERON 1 OS=Arabidopsis thaliana GN=OBE1 PE=1 SV=1
Length = 566
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 128 MNNSGSDLVNAIY---CKNSACRATLRKEDV----------FCKRCSCCICRKYDDNKDP 174
+N S S L+ C+N AC+ L + FC C C IC K+D +
Sbjct: 181 INLSQSSLIEIFVYKRCRNIACQNELPADGCPCEICANRKGFCNLCMCVICNKFDFAVNT 240
Query: 175 SLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKD-RCYSGL-DGSFYCISCRKVNDL 232
W+ C D C H +CA+++ +G + SG+ + F C +C ++L
Sbjct: 241 CRWIGC--------DVCSHWTHTDCAIRDGEISMGVSPKSVSGMGEMLFKCRACNHTSEL 292
Query: 233 LGCWKK 238
LG W K
Sbjct: 293 LG-WVK 297
>sp|Q84N37|PVIP_PEA OBERON-like protein (Fragment) OS=Pisum sativum GN=PVIP PE=1 SV=1
Length = 513
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 141 CKNSACRATLRKEDV----------FCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDS 190
C+N AC+ L ++ FC C C IC K+D + W+ C +
Sbjct: 143 CRNIACQNQLPADECSXDTCTNNNGFCNLCMCVICSKFDFEVNTCRWIGCDLXSHWTHTD 202
Query: 191 CGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLV 241
C + L C + +SG G + F C +C + LLG W K +
Sbjct: 203 CAIREQLICMGPSVKSGSGPS------EMVFRCQACSXTSXLLG-WVKDVF 246
>sp|A7MBJ4|PTPRF_BOVIN Receptor-type tyrosine-protein phosphatase F OS=Bos taurus GN=PTPRF
PE=2 SV=1
Length = 1898
Score = 36.2 bits (82), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 368 PGNIISYTLWHRRAHEGFPARPTCTLFAP-NTRFVVTGLCPATEYQFKVVSSN 419
PG ++ Y L +RRA E ARP+ F + F VTGL Y F++ + N
Sbjct: 838 PGELLGYRLQYRRADE---ARPSTIDFGKDDQHFTVTGLHKGATYIFRLTAKN 887
>sp|A2A8L5|PTPRF_MOUSE Receptor-type tyrosine-protein phosphatase F OS=Mus musculus
GN=Ptprf PE=1 SV=1
Length = 1898
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 368 PGNIISYTLWHRRAHEGFPARPTCTLFAP-NTRFVVTGLCPATEYQFKVVSSN 419
PG ++ Y L +RRA E ARP F + F VTGL Y F++ + N
Sbjct: 838 PGELLGYRLQYRRADE---ARPNTIDFGKDDQHFTVTGLHKGATYVFRLAAKN 887
>sp|Q64604|PTPRF_RAT Receptor-type tyrosine-protein phosphatase F OS=Rattus norvegicus
GN=Ptprf PE=2 SV=1
Length = 1898
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 368 PGNIISYTLWHRRAHEGFPARPTCTLFAP-NTRFVVTGLCPATEYQFKVVSSN 419
PG ++ Y L +RRA E ARP F + F VTGL Y F++ + N
Sbjct: 838 PGELLGYRLQYRRADE---ARPNTIDFGKDDQHFTVTGLHKGATYIFRLAAKN 887
>sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus
GN=Ptprd PE=1 SV=3
Length = 1912
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 354 ATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQF 413
ATS+T+ S +P P + Y + H+ + P + + TR+ V GL P ++Y+F
Sbjct: 336 ATSITLTWDSGNPEP--VSYYIIQHKPKNSEEPYKEIDGI--ATTRYSVAGLSPYSDYEF 391
Query: 414 KVVSSN 419
+VV+ N
Sbjct: 392 RVVAVN 397
>sp|A4IFW2|PTPRF_DANRE Receptor-type tyrosine-protein phosphatase F OS=Danio rerio
GN=ptprf PE=2 SV=1
Length = 1909
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 14/81 (17%)
Query: 344 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLF-----APNT 398
P + + ATS+T+ S +P P +SY + RA + + T F T
Sbjct: 323 PTSLTVTETTATSVTLTWDSGNPEP---VSYYIIQYRA------KTSDTNFQEVDGVATT 373
Query: 399 RFVVTGLCPATEYQFKVVSSN 419
R+ + GL P +EY+F+V++ N
Sbjct: 374 RYSIGGLSPYSEYEFRVMAVN 394
>sp|A5G3X1|GCP_GEOUR Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Geobacter uraniireducens (strain Rf4) GN=gcp PE=3
SV=1
Length = 343
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 262 LVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSS 307
LV A +YK L + +DDA D+V L GLP G +++RL++
Sbjct: 143 LVEAVGRYKTLGQTLDDAAGEAFDKVAKLLGLPYP-GGALIDRLAA 187
>sp|Q6R6L8|FSHR_MESAU Follicle-stimulating hormone receptor OS=Mesocricetus auratus
GN=FSHR PE=2 SV=1
Length = 694
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 459 LSNPSSVEDETNNVTPDRDPNDAQVNNYYTYSKETDKIAS---TNLCDDAIDCT 509
L N S + + + VT RD N + +++ +Y KETD + S +LC++ ID T
Sbjct: 291 LCNKSVLRQDIDYVTQARDQNTSLIDDDLSYGKETDMMYSEFDYDLCNEVIDVT 344
>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1
Length = 35213
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 344 PNMVKFEDVRATSLTVVLGSEDPSPGN-IISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 402
P K D +S+++ G G+ II Y + +RA R TRF V
Sbjct: 21381 PAFPKVYDTTRSSVSLSWGKPAYDGGSPIIGYLVEVKRADSDHWVRCNLPEKLQKTRFEV 21440
Query: 403 TGLCPATEYQFKVVSSN 419
TGL TEYQF+V + N
Sbjct: 21441 TGLMENTEYQFRVYAVN 21457
>sp|Q99969|RARR2_HUMAN Retinoic acid receptor responder protein 2 OS=Homo sapiens
GN=RARRES2 PE=1 SV=1
Length = 163
Score = 33.9 bits (76), Expect = 4.9, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 547 KHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQAR---NG 603
KHPP +E S ++ VDTP P G+ ++R LE L T C+ K + + NG
Sbjct: 39 KHPPVQWAFQETSVESAVDTPFPAGI----FVR-LEFKLQQTSCRKRDWKKPECKVRPNG 93
Query: 604 RSK 606
R +
Sbjct: 94 RKR 96
>sp|Q5R551|RARR2_PONAB Retinoic acid receptor responder protein 2 OS=Pongo abelii
GN=RARRES2 PE=2 SV=1
Length = 163
Score = 33.9 bits (76), Expect = 5.1, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 547 KHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQAR---NG 603
KHPP +E S ++ VDTP P G+ ++R LE L T C+ K + + NG
Sbjct: 39 KHPPVQWAFQETSVESAVDTPFPAGI----FVR-LEFKLQQTSCRKRDWKKPECKVRPNG 93
Query: 604 RSK 606
R +
Sbjct: 94 RKR 96
>sp|Q6V4S5|SDK2_MOUSE Protein sidekick-2 OS=Mus musculus GN=Sdk2 PE=2 SV=1
Length = 2176
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 344 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTR-FVV 402
P + F +VR TS+ ++ G I++Y + H R + T + AP+ R ++
Sbjct: 1308 PMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITH-RLNATTANTATVEVLAPSARQYMA 1366
Query: 403 TGLCPATEYQFKVVS 417
TGL P + Y F++ +
Sbjct: 1367 TGLKPESVYLFRITA 1381
>sp|Q13332|PTPRS_HUMAN Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens
GN=PTPRS PE=1 SV=3
Length = 1948
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 358 TVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVS 417
++ L P +II Y L R G R F P T +VV L P TEY F++ +
Sbjct: 540 SITLSWSPPRQESIIKYELLFREGDHG---REVGRTFDPTTSYVVEDLKPNTEYAFRLAA 596
>sp|Q9Y613|FHOD1_HUMAN FH1/FH2 domain-containing protein 1 OS=Homo sapiens GN=FHOD1 PE=1
SV=3
Length = 1164
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 14 SKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAEL 58
++C+K+ E+ E + QL ++S +A E+LRS + E+ L A L
Sbjct: 885 TRCAKVDFEQLTENLGQLERRSRAAEESLRSLAKHELAPALRARL 929
>sp|Q58EX2|SDK2_HUMAN Protein sidekick-2 OS=Homo sapiens GN=SDK2 PE=1 SV=3
Length = 2172
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 346 MVKFEDVRATSLTVVL--GSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 403
MV+ EDVRA S+ + GS+ SP + YT+ R G A + ++ + F+V
Sbjct: 1407 MVQQEDVRARSVLLSWEPGSDGLSP--VRYYTIQTRELPSGRWALHSASVSHNASSFIVD 1464
Query: 404 GLCPATEYQFKVVSSN 419
L P T Y+F+V ++N
Sbjct: 1465 RLKPFTSYKFRVKATN 1480
>sp|B6CHA3|UHRF1_XENLA E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2
SV=1
Length = 772
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 27/88 (30%)
Query: 140 YCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLEC 199
+CK++ RA C+ C+CCIC +DP L C D C ++ H+ C
Sbjct: 302 HCKDNPKRA--------CRMCACCIC---GGKQDPEKQLLC--------DECDLAFHIYC 342
Query: 200 ALKNERSGIGKDRCYSGLDGSFYCISCR 227
LK S I +D +YC CR
Sbjct: 343 -LKPPLSVIPQDE-------DWYCPDCR 362
>sp|Q9K838|DPO3A_BACHD DNA polymerase III subunit alpha OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=dnaE PE=3 SV=1
Length = 1116
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 622 PQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLR 681
P G + R +E R+ D S+ +EH +K+ ++C R ++K++TW L
Sbjct: 61 PIIGMETTVRFAEDRESDLLLYARSNKGYEHLLKLSTIIQC-----REEKEKYVTWEELL 115
Query: 682 ATPQEVRIVKVFVDTFV 698
A ++ V + FV
Sbjct: 116 AYKDDLLYVIPYSGGFV 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,036,900
Number of Sequences: 539616
Number of extensions: 12464089
Number of successful extensions: 37340
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 37062
Number of HSP's gapped (non-prelim): 324
length of query: 734
length of database: 191,569,459
effective HSP length: 125
effective length of query: 609
effective length of database: 124,117,459
effective search space: 75587532531
effective search space used: 75587532531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)