Query 004715
Match_columns 734
No_of_seqs 187 out of 531
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 03:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.5 7.5E-15 2.6E-19 125.0 4.7 58 11-68 5-62 (79)
2 2yum_A ZZZ3 protein, zinc fing 99.5 5.2E-14 1.8E-18 116.6 6.0 53 23-75 7-65 (75)
3 2cu7_A KIAA1915 protein; nucle 99.4 3.1E-13 1E-17 111.8 7.2 54 22-75 7-60 (72)
4 2iw5_B Protein corest, REST co 99.4 2.4E-13 8.3E-18 135.9 5.6 66 9-74 118-183 (235)
5 2xag_B REST corepressor 1; ami 99.3 1.6E-12 5.5E-17 140.9 5.8 65 11-75 367-431 (482)
6 2elk_A SPCC24B10.08C protein; 99.3 5.4E-12 1.9E-16 101.0 5.8 47 24-70 9-57 (58)
7 1x41_A Transcriptional adaptor 99.2 1.2E-11 4.1E-16 99.3 6.0 49 22-70 6-55 (60)
8 2eqr_A N-COR1, N-COR, nuclear 99.1 9.6E-11 3.3E-15 94.8 7.1 49 20-71 8-56 (61)
9 1guu_A C-MYB, MYB proto-oncoge 99.1 1.7E-10 5.7E-15 89.5 6.3 47 23-69 2-49 (52)
10 1irz_A ARR10-B; helix-turn-hel 99.0 3.1E-10 1.1E-14 94.5 7.3 55 21-75 4-63 (64)
11 2d9a_A B-MYB, MYB-related prot 99.0 3.8E-10 1.3E-14 89.9 5.8 48 22-69 6-54 (60)
12 1gvd_A MYB proto-oncogene prot 99.0 3.7E-10 1.3E-14 87.7 5.3 47 23-69 2-49 (52)
13 2cqr_A RSGI RUH-043, DNAJ homo 99.0 8.7E-10 3E-14 93.1 7.2 47 22-68 16-66 (73)
14 2ltp_A Nuclear receptor corepr 98.5 6.5E-11 2.2E-15 102.2 0.0 56 21-76 13-68 (89)
15 2din_A Cell division cycle 5-l 98.9 1.5E-09 5.3E-14 88.0 7.3 54 22-76 7-60 (66)
16 1w0t_A Telomeric repeat bindin 98.9 3.2E-09 1.1E-13 83.0 6.7 46 24-69 2-50 (53)
17 2dim_A Cell division cycle 5-l 98.9 1.9E-09 6.4E-14 88.5 5.6 48 22-69 7-55 (70)
18 1ity_A TRF1; helix-turn-helix, 98.9 3.5E-09 1.2E-13 86.8 7.2 49 21-69 7-58 (69)
19 2yqk_A Arginine-glutamic acid 98.9 1.6E-09 5.5E-14 88.5 4.7 46 23-71 8-54 (63)
20 2cjj_A Radialis; plant develop 98.8 1.1E-08 3.8E-13 89.9 8.4 54 23-76 7-64 (93)
21 2crg_A Metastasis associated p 98.8 8.6E-09 2.9E-13 86.0 6.6 46 22-70 6-52 (70)
22 3sjm_A Telomeric repeat-bindin 98.8 1.1E-08 3.9E-13 83.8 6.9 46 23-68 10-58 (64)
23 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.2E-08 4.2E-13 89.4 6.7 53 23-75 52-104 (107)
24 2cqq_A RSGI RUH-037, DNAJ homo 98.7 3E-08 1E-12 83.5 6.7 46 22-68 6-55 (72)
25 3osg_A MYB21; transcription-DN 98.7 2.7E-08 9.3E-13 89.6 6.5 49 21-69 8-56 (126)
26 3osg_A MYB21; transcription-DN 98.7 2.6E-08 9E-13 89.7 6.2 50 22-71 60-109 (126)
27 1gv2_A C-MYB, MYB proto-oncoge 98.6 2.2E-08 7.4E-13 86.9 5.0 47 23-69 55-101 (105)
28 1wgx_A KIAA1903 protein; MYB D 98.6 6.2E-08 2.1E-12 82.5 6.6 45 23-67 7-55 (73)
29 1gv2_A C-MYB, MYB proto-oncoge 98.6 3.8E-08 1.3E-12 85.3 5.3 47 23-69 3-50 (105)
30 2k9n_A MYB24; R2R3 domain, DNA 98.6 4.8E-08 1.6E-12 85.6 5.9 46 24-69 1-47 (107)
31 4a69_C Nuclear receptor corepr 98.6 6.5E-08 2.2E-12 84.8 6.1 43 22-64 41-83 (94)
32 3zqc_A MYB3; transcription-DNA 98.5 8.3E-08 2.8E-12 86.8 5.7 50 22-71 52-101 (131)
33 2llk_A Cyclin-D-binding MYB-li 98.5 1.3E-07 4.5E-12 80.0 6.3 49 17-66 16-64 (73)
34 3zqc_A MYB3; transcription-DNA 98.5 5.5E-08 1.9E-12 88.0 3.9 46 24-69 2-48 (131)
35 1h8a_C AMV V-MYB, MYB transfor 98.5 1.4E-07 4.9E-12 84.7 5.7 48 22-69 25-73 (128)
36 1h8a_C AMV V-MYB, MYB transfor 98.5 7.3E-08 2.5E-12 86.5 3.6 46 23-68 78-123 (128)
37 2ckx_A NGTRF1, telomere bindin 98.3 7.2E-07 2.5E-11 77.0 6.7 47 25-71 1-52 (83)
38 1h89_C C-MYB, MYB proto-oncoge 98.3 3.3E-07 1.1E-11 84.8 3.5 47 22-68 108-154 (159)
39 2juh_A Telomere binding protei 98.3 1.4E-06 4.8E-11 80.1 7.5 55 17-71 10-69 (121)
40 2aje_A Telomere repeat-binding 98.3 9.3E-07 3.2E-11 79.5 6.0 50 20-69 9-63 (105)
41 4eef_G F-HB80.4, designed hema 98.2 8.2E-08 2.8E-12 82.2 -1.2 43 24-66 20-66 (74)
42 2roh_A RTBP1, telomere binding 98.2 2.1E-06 7.1E-11 79.1 7.6 51 20-70 27-82 (122)
43 1h89_C C-MYB, MYB proto-oncoge 98.2 1.1E-06 3.8E-11 81.4 5.4 48 22-69 56-104 (159)
44 1x58_A Hypothetical protein 49 98.2 1.8E-06 6.1E-11 71.8 5.7 47 21-67 5-54 (62)
45 1ign_A Protein (RAP1); RAP1,ye 97.7 2E-05 6.9E-10 79.9 3.7 49 22-70 6-60 (246)
46 2xag_B REST corepressor 1; ami 96.8 0.00019 6.5E-09 78.5 0.0 46 24-72 189-234 (482)
47 1ofc_X ISWI protein; nuclear p 96.7 0.0015 5E-08 68.1 5.7 48 25-72 111-159 (304)
48 3hm5_A DNA methyltransferase 1 95.9 0.018 6.2E-07 51.1 7.3 51 24-77 30-85 (93)
49 1ug2_A 2610100B20RIK gene prod 95.4 0.044 1.5E-06 49.1 7.6 51 24-75 33-86 (95)
50 1fex_A TRF2-interacting telome 95.4 0.023 7.7E-07 46.2 5.3 46 24-69 2-57 (59)
51 4b4c_A Chromodomain-helicase-D 94.7 0.05 1.7E-06 51.9 6.6 52 23-74 6-62 (211)
52 1ofc_X ISWI protein; nuclear p 94.5 0.072 2.5E-06 55.6 7.6 53 23-75 211-279 (304)
53 2y9y_A Imitation switch protei 94.4 0.039 1.3E-06 59.0 5.6 47 25-71 124-172 (374)
54 2ebi_A DNA binding protein GT- 92.0 0.29 9.8E-06 41.3 6.2 46 22-67 2-61 (86)
55 2hzd_A Transcriptional enhance 87.6 0.53 1.8E-05 41.2 4.3 46 22-67 4-70 (82)
56 4iej_A DNA methyltransferase 1 87.2 1.5 5E-05 39.2 7.0 51 24-74 30-85 (93)
57 2lr8_A CAsp8-associated protei 85.8 0.16 5.4E-06 43.5 0.0 42 25-67 15-59 (70)
58 4b4c_A Chromodomain-helicase-D 84.8 1.9 6.4E-05 41.1 7.0 51 24-75 134-199 (211)
59 1ig6_A MRF-2, modulator recogn 77.5 2.3 7.9E-05 37.3 4.4 48 44-98 55-107 (107)
60 2xb0_X Chromo domain-containin 72.0 7.3 0.00025 40.0 7.1 45 24-68 3-52 (270)
61 1ign_A Protein (RAP1); RAP1,ye 60.8 14 0.0005 37.8 6.6 28 45-72 173-200 (246)
62 2xb0_X Chromo domain-containin 59.2 7.4 0.00025 40.0 4.2 27 25-51 169-196 (270)
63 2y9y_A Imitation switch protei 47.0 23 0.00078 38.2 5.7 53 23-75 227-295 (374)
64 2eqy_A RBP2 like, jumonji, at 40.6 1.1E+02 0.0038 27.5 8.4 36 44-79 64-103 (122)
65 2cxy_A BAF250B subunit, HBAF25 29.3 1.3E+02 0.0044 27.0 6.9 32 45-76 74-109 (125)
66 2lm1_A Lysine-specific demethy 29.1 1.6E+02 0.0055 25.5 7.2 46 32-77 47-103 (107)
67 2ohd_A Probable molybdenum cof 26.8 33 0.0011 33.0 2.6 27 405-431 46-72 (151)
68 2iih_A Molybdenum cofactor bio 26.1 34 0.0012 33.0 2.6 26 406-431 54-79 (157)
69 2eey_A Molybdopterin biosynthe 26.0 34 0.0012 33.1 2.6 26 406-431 56-81 (162)
70 2o8x_A Probable RNA polymerase 25.8 1.9E+02 0.0066 21.7 6.4 47 25-73 14-60 (70)
71 2ekn_A Probable molybdenum cof 24.8 36 0.0012 33.0 2.5 27 405-431 55-81 (159)
72 1fse_A GERE; helix-turn-helix 24.7 1.8E+02 0.0061 22.1 6.1 47 23-72 8-54 (74)
73 2li6_A SWI/SNF chromatin-remod 21.8 97 0.0033 27.5 4.6 32 44-75 71-102 (116)
74 1ekr_A Molybdenum cofactor bio 21.2 41 0.0014 32.6 2.1 25 407-431 57-81 (161)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.51 E-value=7.5e-15 Score=125.03 Aligned_cols=58 Identities=26% Similarity=0.458 Sum_probs=54.6
Q ss_pred ccccCCCeecccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHH
Q 004715 11 VLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (734)
Q Consensus 11 v~K~RKPytitk~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKY 68 (734)
.+|.++++.....+..||+||+++||+||++||.+|.+||++||+||..||+.|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 5 SSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4588889998889999999999999999999999999999999999999999998876
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.2e-14 Score=116.62 Aligned_cols=53 Identities=38% Similarity=0.696 Sum_probs=49.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC------hhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYG------RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YG------rdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
.++.||.||+++|+++|+.|| .+|.+||.+|++||..|||.|+|+||.++.+.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999 79999999999999999999999999876543
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=3.1e-13 Score=111.83 Aligned_cols=54 Identities=31% Similarity=0.632 Sum_probs=50.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
..++.||+||+++|++++++||.+|..||.+|++||..||+.|+++||.++.+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999999999999999999999999887554
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.38 E-value=2.4e-13 Score=135.93 Aligned_cols=66 Identities=30% Similarity=0.488 Sum_probs=60.8
Q ss_pred ccccccCCCeecccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 004715 9 DLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (734)
Q Consensus 9 ~~v~K~RKPytitk~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k 74 (734)
+.+.+.|+|+.+++...+||+||+++|++||++||++|..||++|||||..||+.|+.+|+.|+.-
T Consensus 118 ~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnL 183 (235)
T 2iw5_B 118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI 183 (235)
T ss_dssp TTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred hhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhhH
Confidence 345678899999999999999999999999999999999999999999999999999999888443
No 5
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.29 E-value=1.6e-12 Score=140.93 Aligned_cols=65 Identities=31% Similarity=0.531 Sum_probs=58.7
Q ss_pred ccccCCCeecccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 004715 11 VLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 11 v~K~RKPytitk~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
+...|.|+.+++...+||+|||++||+||++|||+|+.||++|||||..||++|+++|+.++.-.
T Consensus 367 ~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld 431 (482)
T 2xag_B 367 IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNID 431 (482)
T ss_dssp TGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHH
T ss_pred cccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhChH
Confidence 34567888889999999999999999999999999999999999999999999999988865443
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.25 E-value=5.4e-12 Score=101.02 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhC-CCCHHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIG-TKKAVQIRSHAQKFFS 70 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YG-rdWKkIAe~Vg-TRT~~QVRSHAQKYF~ 70 (734)
++.||.||+++|++++++|| .+|+.||.+|+ +||..|||.|+++||+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 67899999999999999999 69999999999 9999999999999985
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=1.2e-11 Score=99.29 Aligned_cols=49 Identities=31% Similarity=0.532 Sum_probs=45.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhCCCCHHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFFS 70 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG-rdWKkIAe~VgTRT~~QVRSHAQKYF~ 70 (734)
..+..||.||+++|++++++|| .+|.+||.+|++||..|||.|+++|+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3578999999999999999999 599999999999999999999998864
No 8
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=9.6e-11 Score=94.79 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=43.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHH
Q 004715 20 ITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (734)
Q Consensus 20 itk~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~K 71 (734)
..+....||+|||++|++||.+||++|.+||.+|++||..||+-| ||..
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~---Yy~~ 56 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLY---YYLT 56 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHH---HHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHH---HHHh
Confidence 345678999999999999999999999999999999999999876 6554
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.07 E-value=1.7e-10 Score=89.51 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
.++.||.||+++++++++.||. +|..||.+|++||..||+.|+++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998 9999999999999999999998875
No 10
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.05 E-value=3.1e-10 Score=94.53 Aligned_cols=55 Identities=35% Similarity=0.469 Sum_probs=49.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChh---hHHHHHHhC--CCCHHHHHHHHHHHHHHHHHH
Q 004715 21 TKQRERWTEEEHNRFLEALKLYGRA---WQRIEEHIG--TKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrd---WKkIAe~Vg--TRT~~QVRSHAQKYF~Kl~k~ 75 (734)
.+.+.+||+|.|++|++|++.+|.+ |++|-++++ ..|..||+||.|||+.++.|.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4678899999999999999999963 899999865 579999999999999998763
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.00 E-value=3.8e-10 Score=89.93 Aligned_cols=48 Identities=17% Similarity=0.473 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG-rdWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
..++.||.||++++++++++|| .+|..||.+|+.||..||+.|+++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 3678999999999999999999 59999999999999999999988764
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.99 E-value=3.7e-10 Score=87.70 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
.++.||.||+++|+++++.||. +|..||.+|+.||..|||.|+++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999997 7999999999999999999988874
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.97 E-value=8.7e-10 Score=93.13 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=43.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----hhhHHHHHHhCCCCHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKF 68 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG----rdWKkIAe~VgTRT~~QVRSHAQKY 68 (734)
..++.||.||..+|+++|+.|| .+|.+||.+|+.||..||+.|++.+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3678999999999999999999 5899999999999999999997764
No 14
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.51 E-value=6.5e-11 Score=102.18 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=50.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHh
Q 004715 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (734)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~~ 76 (734)
...++.||.||+++|+++++.||.+|..||.+|++||..||+.|+..|+.++....
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~~ 68 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDE 68 (89)
Confidence 45688999999999999999999999999999999999999999999887765443
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.5e-09 Score=88.04 Aligned_cols=54 Identities=26% Similarity=0.509 Sum_probs=48.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHh
Q 004715 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~~ 76 (734)
..++.||.||+++++++++.||.+|.+||.++| ||..|||.|+++|+....+..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHHhChHhcCC
Confidence 357899999999999999999999999999665 999999999999988776654
No 16
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.87 E-value=3.2e-09 Score=83.00 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhC--CCCHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIG--TKKAVQIRSHAQKFF 69 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YG-rdWKkIAe~Vg--TRT~~QVRSHAQKYF 69 (734)
++.||.||+++++++++.|| .+|..|+.+++ +||..||+.++.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 67999999999999999999 59999999999 999999999988764
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.9e-09 Score=88.46 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG-rdWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
..++.||.||.+++++++++|| .+|..||.+|++||..|||.|+++|+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 3678999999999999999999 69999999999999999999988763
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.87 E-value=3.5e-09 Score=86.77 Aligned_cols=49 Identities=20% Similarity=0.500 Sum_probs=44.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhC--CCCHHHHHHHHHHHH
Q 004715 21 TKQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIG--TKKAVQIRSHAQKFF 69 (734)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YG-rdWKkIAe~Vg--TRT~~QVRSHAQKYF 69 (734)
.+.++.||.||.+++++++++|| .+|..||.+++ .||..||+.++.+|+
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 44688999999999999999999 59999999999 999999999987753
No 19
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.6e-09 Score=88.50 Aligned_cols=46 Identities=26% Similarity=0.588 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHH-HhCCCCHHHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGRAWQRIEE-HIGTKKAVQIRSHAQKFFSK 71 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWKkIAe-~VgTRT~~QVRSHAQKYF~K 71 (734)
....||+||+++|++||.+||++|.+|+. +|++||+.||.-+ ||..
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f---YY~w 54 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITF---YYYW 54 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHH---HHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHH---Hhcc
Confidence 45799999999999999999999999998 6999999999755 6644
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.80 E-value=1.1e-08 Score=89.94 Aligned_cols=54 Identities=15% Similarity=0.448 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----hhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHh
Q 004715 23 QRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YG----rdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~~ 76 (734)
..+.||.||..+|+++|..|| .+|.+||.+|+.||..||+.|+++++.++....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999997 589999999999999999999999887775543
No 21
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.78 E-value=8.6e-09 Score=85.99 Aligned_cols=46 Identities=26% Similarity=0.469 Sum_probs=42.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHH-HhCCCCHHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEE-HIGTKKAVQIRSHAQKFFS 70 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWKkIAe-~VgTRT~~QVRSHAQKYF~ 70 (734)
.....||+||+.+|++||.+||++|..|+. +|++||+.||..| ||.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f---YY~ 52 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEY---YYM 52 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHH---HHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHH---HHh
Confidence 467899999999999999999999999999 6999999999877 664
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.77 E-value=1.1e-08 Score=83.84 Aligned_cols=46 Identities=24% Similarity=0.559 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhC--CCCHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIG--TKKAVQIRSHAQKF 68 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~Vg--TRT~~QVRSHAQKY 68 (734)
.+..||+||.+++++++++||. +|..|+.+++ .||..||+.++..|
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999996 9999999866 89999999998764
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.74 E-value=1.2e-08 Score=89.35 Aligned_cols=53 Identities=19% Similarity=0.388 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
.++.||.||+.+|++++..||..|..||.+|++||..||+.|+..+..++.+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 57899999999999999999999999999999999999999988876665443
No 24
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.67 E-value=3e-08 Score=83.47 Aligned_cols=46 Identities=17% Similarity=0.563 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----hhhHHHHHHhCCCCHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKF 68 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG----rdWKkIAe~VgTRT~~QVRSHAQKY 68 (734)
.....||.||+.+|.++|.+|+ .+|.+||++|| ||..||+.|++++
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L 55 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 3467899999999999999998 48999999995 9999999998764
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.66 E-value=2.7e-08 Score=89.58 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=45.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
...++.||.||.++++++++.||.+|..||.+|++||..|||.|+.+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 3468899999999999999999999999999999999999999988774
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.65 E-value=2.6e-08 Score=89.68 Aligned_cols=50 Identities=22% Similarity=0.483 Sum_probs=45.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~K 71 (734)
..++.||.||+++++++++.||..|..||.+|++||..||+.|+..+..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999999997665443
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.63 E-value=2.2e-08 Score=86.86 Aligned_cols=47 Identities=26% Similarity=0.485 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
.++.||.||+++++++++.||..|..||.+|++||..||+.|+..+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999977653
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.60 E-value=6.2e-08 Score=82.45 Aligned_cols=45 Identities=13% Similarity=0.392 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHHHhCCCCHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGR----AWQRIEEHIGTKKAVQIRSHAQK 67 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr----dWKkIAe~VgTRT~~QVRSHAQK 67 (734)
....||.+|..+|++||..|++ +|.+||++||+||+.||+-|.+.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~ 55 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME 55 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4568999999999999999996 79999999999999999988553
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.59 E-value=3.8e-08 Score=85.35 Aligned_cols=47 Identities=26% Similarity=0.554 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
.++.||.||.++++++++.||. +|..||.+|++||..||+.|+++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999997 7999999999999999999988763
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.59 E-value=4.8e-08 Score=85.62 Aligned_cols=46 Identities=26% Similarity=0.490 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
++.||.||.++++++++.||. +|..||.+|++||..||+.++.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 468999999999999999997 9999999999999999999988763
No 31
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.57 E-value=6.5e-08 Score=84.83 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=40.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSH 64 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSH 64 (734)
+....||+|||++|.+||..||++|.+|+.+|++||..||.-|
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~ 83 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLY 83 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHH
Confidence 4467999999999999999999999999999999999999877
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.52 E-value=8.3e-08 Score=86.80 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=45.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~K 71 (734)
..++.||.||++++++++..||..|..||.+|++||..||+.|+..|+.+
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGG
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999997766433
No 33
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.51 E-value=1.3e-07 Score=79.97 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=42.9
Q ss_pred CeecccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHH
Q 004715 17 PYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQ 66 (734)
Q Consensus 17 Pytitk~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQ 66 (734)
-+.....++.||+||.+++++++++||..|..||.++ .||..||+.++.
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 3344557899999999999999999999999999999 999999999975
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.50 E-value=5.5e-08 Score=87.98 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YG-rdWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
++.||.||.++++++++.|| .+|..||.+|++||..||+.|+++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 57899999999999999999 58999999999999999999988874
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.46 E-value=1.4e-07 Score=84.66 Aligned_cols=48 Identities=27% Similarity=0.577 Sum_probs=44.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
..++.||.||.++++++++.||. +|..||.+|++||..||+.|+.+|+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 36789999999999999999996 7999999999999999999988763
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.46 E-value=7.3e-08 Score=86.54 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKY 68 (734)
.++.||+||+++++++++.||.+|..||.+|++||..||+.|+..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999997654
No 37
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.34 E-value=7.2e-07 Score=77.02 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHHH----hCCCCHHHHHHHHHHHHHH
Q 004715 25 ERWTEEEHNRFLEALKLYGR-AWQRIEEH----IGTKKAVQIRSHAQKFFSK 71 (734)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr-dWKkIAe~----VgTRT~~QVRSHAQKYF~K 71 (734)
..||.||.+.+++|+++||. +|+.|+.. +..||.+||+.++.+++.+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999998 99999985 7899999999998886443
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.27 E-value=3.3e-07 Score=84.84 Aligned_cols=47 Identities=26% Similarity=0.462 Sum_probs=43.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKY 68 (734)
..++.||+||+.+++++++.||..|..||.+|++||..||+.|+..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999997653
No 39
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.27 E-value=1.4e-06 Score=80.14 Aligned_cols=55 Identities=13% Similarity=0.332 Sum_probs=47.8
Q ss_pred CeecccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 004715 17 PYTITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKFFSK 71 (734)
Q Consensus 17 Pytitk~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~V----gTRT~~QVRSHAQKYF~K 71 (734)
+....+.++.||.||.+.+++|+++||. .|..|+.+. ..||.+||+.++..+..+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3455678999999999999999999998 999999974 789999999998876443
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.26 E-value=9.3e-07 Score=79.50 Aligned_cols=50 Identities=12% Similarity=0.327 Sum_probs=44.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHh----CCCCHHHHHHHHHHHH
Q 004715 20 ITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKFF 69 (734)
Q Consensus 20 itk~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~V----gTRT~~QVRSHAQKYF 69 (734)
..+.+..||.||.+.+++|+++||. .|+.|+... ..||.+||+.++..++
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnll 63 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLV 63 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999998 999999854 7899999999987753
No 41
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.24 E-value=8.2e-08 Score=82.19 Aligned_cols=43 Identities=16% Similarity=0.445 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCh----hhHHHHHHhCCCCHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYGR----AWQRIEEHIGTKKAVQIRSHAQ 66 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr----dWKkIAe~VgTRT~~QVRSHAQ 66 (734)
...||.+|.++|..||..|++ +|.+||++||.||+.||+.|+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999997 7999999999999999999987
No 42
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.23 E-value=2.1e-06 Score=79.13 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=45.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHh----CCCCHHHHHHHHHHHHH
Q 004715 20 ITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKFFS 70 (734)
Q Consensus 20 itk~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~V----gTRT~~QVRSHAQKYF~ 70 (734)
..+.+..||.||.+.+++|+++||. +|+.|+.+. ..||.+||+.++.+++.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 3567889999999999999999998 999999864 78999999999887643
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.21 E-value=1.1e-06 Score=81.37 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=44.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (734)
..++.||.||.++++++++.||. +|..||.+|++||..||+.++.+|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35789999999999999999996 7999999999999999999988764
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.19 E-value=1.8e-06 Score=71.81 Aligned_cols=47 Identities=23% Similarity=0.420 Sum_probs=42.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHH---HhCCCCHHHHHHHHHH
Q 004715 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEE---HIGTKKAVQIRSHAQK 67 (734)
Q Consensus 21 tk~r~~WTeEEHelFLeGLe~YGrdWKkIAe---~VgTRT~~QVRSHAQK 67 (734)
+.++..||+||.+.+++|+++||+.|+.|+. |+..||.+.|+.....
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHH
Confidence 4578899999999999999999999999994 7889999999987543
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.67 E-value=2e-05 Score=79.90 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=43.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChh------hHHHHHHhCCCCHHHHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGRA------WQRIEEHIGTKKAVQIRSHAQKFFS 70 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGrd------WKkIAe~VgTRT~~QVRSHAQKYF~ 70 (734)
..+..||+||.++.|+.+++||.. |..||.+++.||..|||.|+..|+.
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS 60 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 357799999999999999999874 9999999999999999999988753
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.81 E-value=0.00019 Score=78.53 Aligned_cols=46 Identities=22% Similarity=0.485 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl 72 (734)
...||++|+.+|.+||..||++|.+|+.+|++||..+|-.| ||..-
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~y---YY~WK 234 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKF---YYSWK 234 (482)
T ss_dssp -------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHH---hcccc
Confidence 45899999999999999999999999999999999999877 66544
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.72 E-value=0.0015 Score=68.09 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 004715 25 ERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (734)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF~Kl 72 (734)
+.||..+-..|+.|+.+||| +|..||..|++||+.+|+-|++-|+.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 47999999999999999999 8999999999999999999999887665
No 48
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.92 E-value=0.018 Score=51.10 Aligned_cols=51 Identities=12% Similarity=0.345 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHhh
Q 004715 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHI-----GTKKAVQIRSHAQKFFSKLEKEAL 77 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGrdWKkIAe~V-----gTRT~~QVRSHAQKYF~Kl~k~~~ 77 (734)
...||.||.+.+++-.+.||.+|-.|+... +.||..+|+.+ |+.-..+...
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~R---yY~v~~~l~~ 85 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKER---YYHICAKLAN 85 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHH---HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHH---HHHHHHHHHH
Confidence 379999999999999999999999999966 57999999998 4444444433
No 49
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.38 E-value=0.044 Score=49.07 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCh---hhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYGR---AWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr---dWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
-..||.||.+-.|...++-|. .|..||..+|.|++.||.-+.|. +++|-..
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~-Lm~Lf~~ 86 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE-LMQLFHT 86 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHH-HHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHH-HHHHHHH
Confidence 348999999999999999997 89999999999999999999887 4555444
No 50
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.35 E-value=0.023 Score=46.19 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------Ch-hhHHHHH-HhCCCCHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLY--------GR-AWQRIEE-HIGTKKAVQIRSHAQKFF 69 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~Y--------Gr-dWKkIAe-~VgTRT~~QVRSHAQKYF 69 (734)
+..+|+||...+++-|..| |. -|+.|++ .+..+|-.++|.|..|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999 54 7999999 799999999999977753
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.69 E-value=0.05 Score=51.89 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--h-hhHHHHHH--hCCCCHHHHHHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYG--R-AWQRIEEH--IGTKKAVQIRSHAQKFFSKLEK 74 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YG--r-dWKkIAe~--VgTRT~~QVRSHAQKYF~Kl~k 74 (734)
....||+.|-..|+.|+.+|| + +|..|++. +..||...|+.+++-|..+..+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999 4 79999975 5689999999999887666544
No 52
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.48 E-value=0.072 Score=55.58 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHH------------HHhCCCCHHHHHHHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGR----AWQRIE------------EHIGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr----dWKkIA------------e~VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
.+..||+||++.||-+|-+||- .|.+|- -||.+||+.+|..|++--..-+.|+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999997 799996 3788999999999999755555555
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.39 E-value=0.039 Score=59.04 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 004715 25 ERWTEEEHNRFLEALKLYGR-AWQRIEEHIG-TKKAVQIRSHAQKFFSK 71 (734)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr-dWKkIAe~Vg-TRT~~QVRSHAQKYF~K 71 (734)
+.||.-+-..|+.|+++||| +...||..|+ +||+.+|+-+++-|+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999 7999999998 99999999999877665
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=92.01 E-value=0.29 Score=41.27 Aligned_cols=46 Identities=13% Similarity=0.342 Sum_probs=37.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----------hhhHHHHHHhC----CCCHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYG----------RAWQRIEEHIG----TKKAVQIRSHAQK 67 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YG----------rdWKkIAe~Vg----TRT~~QVRSHAQK 67 (734)
+....||++|-.+||.+..... ..|..||+.+. .||+.||+.-...
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~n 61 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRN 61 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3567999999999999987532 17999999653 7999999998654
No 55
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=87.59 E-value=0.53 Score=41.22 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=36.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCh----hh------------HHHHHHh-----CCCCHHHHHHHHHH
Q 004715 22 KQRERWTEEEHNRFLEALKLYGR----AW------------QRIEEHI-----GTKKAVQIRSHAQK 67 (734)
Q Consensus 22 k~r~~WTeEEHelFLeGLe~YGr----dW------------KkIAe~V-----gTRT~~QVRSHAQK 67 (734)
...+.|.++=...|++||+.|.. .+ .-|++|| ..||.-||-||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHH
Confidence 35689999999999999999963 11 1356665 37999999999884
No 56
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=87.20 E-value=1.5 Score=39.19 Aligned_cols=51 Identities=12% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHHH-h----CCCCHHHHHHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYGRAWQRIEEH-I----GTKKAVQIRSHAQKFFSKLEK 74 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGrdWKkIAe~-V----gTRT~~QVRSHAQKYF~Kl~k 74 (734)
...||.||-..+++..+.|+-+|--|+.. - +.||..++..+.=..-.+|.+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999984 3 479999999984433333333
No 57
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=85.79 E-value=0.16 Score=43.47 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHhCh---hhHHHHHHhCCCCHHHHHHHHHH
Q 004715 25 ERWTEEEHNRFLEALKLYGR---AWQRIEEHIGTKKAVQIRSHAQK 67 (734)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr---dWKkIAe~VgTRT~~QVRSHAQK 67 (734)
..||.||.+-.|...++-|. .|..||.-+ .||+.||..+.|.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~ 59 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQ 59 (70)
Confidence 38999999999999999997 899999988 7999999999776
No 58
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=84.84 E-value=1.9 Score=41.07 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCh-hhHHHHH--H------------hCCCCHHHHHHHHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYGR-AWQRIEE--H------------IGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr-dWKkIAe--~------------VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
...||.+|...+|.|+-+||- +|..|-. - ..+.+...+..++. |++++.+.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l~~ 199 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLLSR 199 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHHHH
Confidence 457999999999999999996 9999965 1 12456778888887 66665543
No 59
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=77.52 E-value=2.3 Score=37.30 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=35.0
Q ss_pred hhhHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccCCCCCCCC
Q 004715 44 RAWQRIEEHIG-----TKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKR 98 (734)
Q Consensus 44 rdWKkIAe~Vg-----TRT~~QVRSHAQKYF~Kl~k~~~~kG~~~g~~~~I~IPPpRPKR 98 (734)
+.|+.|++-+| |-...+++.|-+||+.-.+..-.. ..+..||++.|++
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~-------~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKG-------EEDKPLPPIKPRK 107 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHH-------HTSSSSCTTCSCC
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCCCCCCC
Confidence 37999999766 234578999999998777764321 2356799988875
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=71.98 E-value=7.3 Score=40.02 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCh---hhHHHHH--HhCCCCHHHHHHHHHHH
Q 004715 24 RERWTEEEHNRFLEALKLYGR---AWQRIEE--HIGTKKAVQIRSHAQKF 68 (734)
Q Consensus 24 r~~WTeEEHelFLeGLe~YGr---dWKkIAe--~VgTRT~~QVRSHAQKY 68 (734)
++.||+.|-++|+++|.+||. +|..|.+ -+..|+...|+.-++-.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 467999999999999999995 8999976 37789988887766543
No 61
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=60.78 E-value=14 Score=37.81 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=24.9
Q ss_pred hhHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 004715 45 AWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (734)
Q Consensus 45 dWKkIAe~VgTRT~~QVRSHAQKYF~Kl 72 (734)
-|+.||++.+.+|...+|.+..||..+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 7999999999999999999988876554
No 62
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=59.22 E-value=7.4 Score=40.00 Aligned_cols=27 Identities=33% Similarity=0.818 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHH
Q 004715 25 ERWTEEEHNRFLEALKLYGR-AWQRIEE 51 (734)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGr-dWKkIAe 51 (734)
-.|+.+|...+|.|+-+||- .|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 46999999999999999999 9999976
No 63
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=46.98 E-value=23 Score=38.19 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHH------------HhCCCCHHHHHHHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGR----AWQRIEE------------HIGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGr----dWKkIAe------------~VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
.+..||++|...+|-+|-+||- .|.+|-. |+.+||+..|.-++.-...-|.|+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3558999999999999999996 5999932 478999999999998544434443
No 64
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.60 E-value=1.1e+02 Score=27.49 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=27.0
Q ss_pred hhhHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHhhhc
Q 004715 44 RAWQRIEEHIGTK----KAVQIRSHAQKFFSKLEKEALSK 79 (734)
Q Consensus 44 rdWKkIAe~VgTR----T~~QVRSHAQKYF~Kl~k~~~~k 79 (734)
+.|+.|++.+|=. ...++|.|-+||+.-.+......
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~~ 103 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGD 103 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhcC
Confidence 3799999976532 24689999999998888865433
No 65
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=29.31 E-value=1.3e+02 Score=27.03 Aligned_cols=32 Identities=9% Similarity=0.363 Sum_probs=25.4
Q ss_pred hhHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHh
Q 004715 45 AWQRIEEHIGTKK----AVQIRSHAQKFFSKLEKEA 76 (734)
Q Consensus 45 dWKkIAe~VgTRT----~~QVRSHAQKYF~Kl~k~~ 76 (734)
.|+.|++.+|=-+ ..+++.|-.||+...++.-
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~ 109 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKI 109 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7999999765433 5789999999988888763
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=29.12 E-value=1.6e+02 Score=25.46 Aligned_cols=46 Identities=11% Similarity=0.238 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhC-------hhhHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHhh
Q 004715 32 HNRFLEALKLYG-------RAWQRIEEHIGTKK----AVQIRSHAQKFFSKLEKEAL 77 (734)
Q Consensus 32 HelFLeGLe~YG-------rdWKkIAe~VgTRT----~~QVRSHAQKYF~Kl~k~~~ 77 (734)
+.+|..-.+.=| +.|+.|++.+|=-. ..+++.|-.||+.-.+....
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~ 103 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTS 103 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHh
Confidence 456665444433 37999999776432 57899998888887776643
No 67
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta, biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Probab=26.77 E-value=33 Score=32.98 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004715 405 IAAATVAAATAWWAAHGLLPLCAPFHA 431 (734)
Q Consensus 405 IaAATVAAAtAWWAahGLLPlcaP~~~ 431 (734)
++.|=+|+-.|==-++-|+|||-||+.
T Consensus 46 l~vAriAgImaaK~T~~LIPlCHpl~l 72 (151)
T 2ohd_A 46 ITVAKTAGILAAKKTPELIPMCHPIPL 72 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHhhhHhhhCcccCcCcc
Confidence 345555555555567789999999654
No 68
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=26.09 E-value=34 Score=33.00 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004715 406 AAATVAAATAWWAAHGLLPLCAPFHA 431 (734)
Q Consensus 406 aAATVAAAtAWWAahGLLPlcaP~~~ 431 (734)
+.|-+|+-.|==-++-|+|||-||+.
T Consensus 54 ~vAriAgImaAK~T~~LIPlCHpl~l 79 (157)
T 2iih_A 54 VVAQLAGILAAKKTADLIPLCHPLPL 79 (157)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCcccCcccc
Confidence 34445555555566789999999654
No 69
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis, structural genomics; 1.94A {Geobacillus kaustophilus}
Probab=26.01 E-value=34 Score=33.14 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004715 406 AAATVAAATAWWAAHGLLPLCAPFHA 431 (734)
Q Consensus 406 aAATVAAAtAWWAahGLLPlcaP~~~ 431 (734)
+.|-+|+-.|==-++-|+|||-||+.
T Consensus 56 ~vAriAgImaAK~T~~LIPlCHpl~l 81 (162)
T 2eey_A 56 AVAQVAGVMAAKKTADLIPMCHPLML 81 (162)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCcccCcccc
Confidence 33444444444556789999999654
No 70
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.79 E-value=1.9e+02 Score=21.66 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 004715 25 ERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLE 73 (734)
Q Consensus 25 ~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~ 73 (734)
..+++.|.+.|..- -..|..++.||+.+|- +...|+.+-.+-..+|.
T Consensus 14 ~~L~~~~r~il~l~-~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 14 ADLTTDQREALLLT-QLLGLSYADAAAVCGC-PVGTIRSRVARARDALL 60 (70)
T ss_dssp TSSCHHHHHHHHHH-HTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH-HHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHH
Confidence 35777777766542 2568899999998875 55566666555444443
No 71
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural genomic NPPSFA, national project on protein structural and function analyses; HET: FLC; 2.05A {Pyrococcus horikoshii}
Probab=24.77 E-value=36 Score=32.95 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 004715 405 IAAATVAAATAWWAAHGLLPLCAPFHA 431 (734)
Q Consensus 405 IaAATVAAAtAWWAahGLLPlcaP~~~ 431 (734)
++.|-+|+-.|==-+.-|+|||-||+.
T Consensus 55 l~vAriAgImaaK~T~~LIPlCHpl~l 81 (159)
T 2ekn_A 55 LATAQIAGILAVKRTPELIPLCHPIPI 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCE
T ss_pred HHHHHHHHHHHhhhHHhhCcccCcccc
Confidence 344555555555566789999999653
No 72
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.69 E-value=1.8e+02 Score=22.11 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 004715 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (734)
Q Consensus 23 ~r~~WTeEEHelFLeGLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~Kl 72 (734)
....+|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|-++-+.++
T Consensus 8 ~~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 345789999988877 5 678899999998875 6677777766655555
No 73
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.79 E-value=97 Score=27.51 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=26.8
Q ss_pred hhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 004715 44 RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (734)
Q Consensus 44 rdWKkIAe~VgTRT~~QVRSHAQKYF~Kl~k~ 75 (734)
+.|+.|++-+|-....+++.|-.||+.-.+..
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~ 102 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRILLPYERH 102 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHHSHHHHH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 37999999877666899999999998877764
No 74
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=21.21 E-value=41 Score=32.63 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCC
Q 004715 407 AATVAAATAWWAAHGLLPLCAPFHA 431 (734)
Q Consensus 407 AATVAAAtAWWAahGLLPlcaP~~~ 431 (734)
.|-+|+-.|==-++-|+|||-||+.
T Consensus 57 vAriAgImaAK~T~~LIPlCHpl~l 81 (161)
T 1ekr_A 57 TARIAGIQAAKRTWDLIPLCHPLML 81 (161)
T ss_dssp HHHHHHHHHHHTHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHhhhhhCcccCcCcc
Confidence 3444444444456689999999654
Done!