Query 004719
Match_columns 733
No_of_seqs 566 out of 3445
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 03:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ilv_A Glutamine-dependent NAD 100.0 3E-127 1E-131 1118.1 32.0 621 1-697 3-628 (634)
2 4f4h_A Glutamine dependent NAD 100.0 7E-113 2E-117 983.9 25.5 532 3-684 6-559 (565)
3 3sdb_A Glutamine-dependent NAD 100.0 9E-108 3E-112 958.9 27.5 611 2-682 11-663 (680)
4 3n05_A NH(3)-dependent NAD(+) 100.0 5.4E-96 2E-100 850.5 24.9 556 1-684 2-580 (590)
5 3q4g_A NH(3)-dependent NAD(+) 100.0 7E-52 2.4E-56 435.2 12.8 254 325-654 18-276 (279)
6 3dpi_A NAD+ synthetase; ssgcid 100.0 3.9E-49 1.3E-53 414.5 11.0 252 325-655 24-276 (285)
7 1wxi_A NH(3)-dependent NAD(+) 100.0 3.5E-48 1.2E-52 408.1 16.0 250 325-658 17-270 (275)
8 1kqp_A NAD+ synthase, NH(3)-de 100.0 3.2E-47 1.1E-51 400.5 15.0 247 326-657 17-266 (271)
9 3fiu_A NH(3)-dependent NAD(+) 100.0 7.9E-46 2.7E-50 385.0 14.0 238 328-655 9-246 (249)
10 3p52_A NH(3)-dependent NAD(+) 100.0 4.7E-45 1.6E-49 379.0 11.3 243 327-656 5-247 (249)
11 3ivz_A Nitrilase; alpha-beta s 100.0 4.1E-44 1.4E-48 375.0 6.8 239 3-283 1-246 (262)
12 3p8k_A Hydrolase, carbon-nitro 100.0 1.4E-43 4.6E-48 375.2 7.8 246 1-283 18-268 (281)
13 3hkx_A Amidase; alpha-beta-BET 100.0 5.2E-44 1.8E-48 378.7 4.3 244 2-283 19-267 (283)
14 1xng_A NH(3)-dependent NAD(+) 100.0 1.1E-42 3.9E-47 365.7 14.0 253 329-664 6-262 (268)
15 2e11_A Hydrolase; dimethylarse 100.0 9.9E-43 3.4E-47 365.1 9.8 243 1-282 1-251 (266)
16 2w1v_A Nitrilase-2, nitrilase 100.0 2.6E-42 8.9E-47 364.0 10.5 248 1-283 1-257 (276)
17 2e18_A NH(3)-dependent NAD(+) 100.0 5.9E-41 2E-45 350.5 13.7 248 329-662 7-254 (257)
18 1f89_A 32.5 kDa protein YLR351 100.0 4E-41 1.4E-45 357.4 8.8 246 3-282 10-272 (291)
19 1uf5_A N-carbamyl-D-amino acid 100.0 2E-41 6.7E-46 361.6 5.6 249 2-283 2-284 (303)
20 2vhh_A CG3027-PA; hydrolase; 2 100.0 6.4E-40 2.2E-44 363.8 6.8 250 2-283 71-354 (405)
21 1ems_A Nitfhit, NIT-fragIle hi 100.0 9.7E-39 3.3E-43 358.5 6.7 248 1-283 12-273 (440)
22 2dyu_A Formamidase; AMIF, CEK, 100.0 7.8E-39 2.7E-43 346.8 5.5 242 3-283 13-269 (334)
23 2uxy_A Aliphatic amidase; nitr 100.0 1.1E-38 3.7E-43 346.6 6.1 240 2-281 11-267 (341)
24 2vxo_A GMP synthase [glutamine 99.8 9.6E-21 3.3E-25 221.8 5.9 222 329-603 224-472 (697)
25 1gpm_A GMP synthetase, XMP ami 99.6 5.5E-16 1.9E-20 177.1 7.1 202 329-602 211-432 (525)
26 2hma_A Probable tRNA (5-methyl 99.4 9.8E-14 3.4E-18 152.0 7.9 170 342-577 3-204 (376)
27 2ywb_A GMP synthase [glutamine 99.4 2E-13 6.8E-18 155.3 9.1 199 331-602 195-410 (503)
28 2der_A TRNA-specific 2-thiouri 99.3 1E-12 3.5E-17 144.0 7.3 163 349-577 18-212 (380)
29 2dpl_A GMP synthetase, GMP syn 99.3 1.6E-12 5.4E-17 138.8 8.1 177 331-576 6-194 (308)
30 3uow_A GMP synthetase; structu 99.2 1.4E-11 4.7E-16 141.5 9.9 174 341-577 247-441 (556)
31 3bl5_A Queuosine biosynthesis 99.2 3.1E-12 1.1E-16 129.1 3.1 169 349-575 4-188 (219)
32 2pg3_A Queuosine biosynthesis 99.1 8.3E-11 2.8E-15 120.2 9.2 66 347-450 1-67 (232)
33 3tqi_A GMP synthase [glutamine 99.1 3E-11 1E-15 138.0 5.5 174 335-577 220-412 (527)
34 2c5s_A THII, probable thiamine 99.1 2.3E-10 8E-15 126.9 11.5 159 348-577 187-356 (413)
35 1kor_A Argininosuccinate synth 98.9 8.6E-10 2.9E-14 121.5 5.6 151 349-562 1-164 (400)
36 3k32_A Uncharacterized protein 98.7 7E-09 2.4E-13 103.9 5.1 139 348-552 6-151 (203)
37 1vl2_A Argininosuccinate synth 98.7 1.3E-08 4.4E-13 111.9 6.4 63 349-451 15-78 (421)
38 2nz2_A Argininosuccinate synth 98.7 2.1E-08 7.1E-13 110.8 7.1 149 349-561 6-171 (413)
39 1sur_A PAPS reductase; assimil 98.6 1.1E-07 3.6E-12 95.9 10.9 72 339-449 36-107 (215)
40 1wy5_A TILS, hypothetical UPF0 98.5 1.8E-07 6.1E-12 100.0 7.7 150 348-561 24-187 (317)
41 1k92_A Argininosuccinate synth 98.4 2E-07 6.9E-12 103.5 6.3 66 349-452 11-77 (455)
42 2o8v_A Phosphoadenosine phosph 98.4 1.1E-06 3.7E-11 90.9 10.6 62 349-448 46-107 (252)
43 3a2k_A TRNA(Ile)-lysidine synt 98.3 9.1E-07 3.1E-11 99.5 9.7 147 348-561 18-185 (464)
44 1ni5_A Putative cell cycle pro 98.2 1.8E-06 6.1E-11 96.2 7.7 73 339-448 6-82 (433)
45 1vbk_A Hypothetical protein PH 98.2 7.3E-07 2.5E-11 94.8 4.3 61 349-451 180-248 (307)
46 1jgt_A Beta-lactam synthetase; 98.1 9.3E-07 3.2E-11 100.6 4.4 82 328-449 219-302 (513)
47 1q15_A CARA; CMPR, (2S,5S)-5-c 98.1 1.2E-06 4E-11 99.6 3.4 61 349-449 239-299 (503)
48 1ct9_A Asparagine synthetase B 98.0 8.9E-06 3E-10 93.3 8.6 92 330-449 210-301 (553)
49 2wsi_A FAD synthetase; transfe 97.8 3.6E-05 1.2E-09 81.8 7.7 90 339-448 42-137 (306)
50 2oq2_A Phosphoadenosine phosph 97.7 8.6E-05 2.9E-09 77.0 9.5 73 339-448 34-110 (261)
51 1zun_A Sulfate adenylyltransfe 97.7 9.5E-05 3.3E-09 79.1 9.5 75 339-449 39-113 (325)
52 2goy_A Adenosine phosphosulfat 97.7 0.00024 8.3E-09 74.2 11.9 71 339-449 46-116 (275)
53 3rjz_A N-type ATP pyrophosphat 97.5 2.6E-05 8.8E-10 79.6 2.0 65 347-449 3-73 (237)
54 3fwk_A FMN adenylyltransferase 92.6 0.11 3.7E-06 54.7 5.3 92 338-446 46-140 (308)
55 3tva_A Xylose isomerase domain 37.2 19 0.00064 36.3 3.2 59 19-84 98-156 (290)
56 3obe_A Sugar phosphate isomera 37.2 22 0.00076 36.5 3.8 58 19-84 110-167 (305)
57 3dx5_A Uncharacterized protein 34.0 21 0.00073 35.7 3.0 63 17-84 78-140 (286)
58 3ngf_A AP endonuclease, family 30.8 32 0.0011 34.3 3.7 59 20-84 90-148 (269)
59 3qc0_A Sugar isomerase; TIM ba 30.4 17 0.00058 36.1 1.5 61 20-84 80-140 (275)
60 1k77_A EC1530, hypothetical pr 27.7 39 0.0013 33.1 3.7 60 20-84 82-141 (260)
61 3cqj_A L-ribulose-5-phosphate 26.2 27 0.00093 35.2 2.2 58 20-83 105-163 (295)
62 3kws_A Putative sugar isomeras 25.9 32 0.0011 34.5 2.7 61 20-84 101-163 (287)
63 1i60_A IOLI protein; beta barr 23.5 44 0.0015 33.0 3.1 59 20-83 81-139 (278)
64 1uf3_A Hypothetical protein TT 22.6 1.1E+02 0.0038 28.8 5.8 62 16-88 12-73 (228)
65 3u0h_A Xylose isomerase domain 22.4 40 0.0014 33.4 2.6 59 20-84 81-139 (281)
No 1
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=3.2e-127 Score=1118.14 Aligned_cols=621 Identities=30% Similarity=0.454 Sum_probs=538.1
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCc
Q 004719 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~ 80 (733)
|+.||||++|+|++++|+++|+++|+++|++|+++|||||||||+++|||.++|++.++++...+++.|++|++.+ .+
T Consensus 3 M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~la~~~--~~ 80 (634)
T 3ilv_A 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASC--TD 80 (634)
T ss_dssp -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTTC--TT
T ss_pred CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhhChhhhHHHHHHHHHHHHhC--CC
Confidence 6679999999999999999999999999999999999999999999999999999988888888899999999873 48
Q ss_pred eeeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccc
Q 004719 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (733)
Q Consensus 81 i~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~ 160 (733)
+++++|+|++.++++|||++++.+|+|+++|+|+|||++|+|+|.|||+||+... .+.+. .++..+|||+.
T Consensus 81 i~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~-~~~~~--------~~g~~~p~g~~ 151 (634)
T 3ilv_A 81 ITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNH-TTTFL--------YNDVKYPFGDV 151 (634)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTC-EEEEE--------ETTEEEEEESC
T ss_pred CEEEEeeeEeeCCCccEEEEEEECCeEEEEEcCEeCCCCCCcChhhhcCCCCccc-cceec--------ccCcccccCCe
Confidence 9999999999999999999999999999999999999999999999999998641 11221 25678999999
Q ss_pred eeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceee
Q 004719 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (733)
Q Consensus 161 vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~ 240 (733)
+|+++++|||++||||+|||+.+++.++++|||||+|||+|++..||..+|..++++||.+|+++|||||++|+++++++
T Consensus 152 vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 231 (634)
T 3ilv_A 152 LYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI 231 (634)
T ss_dssp CEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCE
T ss_pred EEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCCCceE
Confidence 99999999999999999999868889999999999999999999999999999999999999999999999999877899
Q ss_pred ecceeEEEEcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhhcCCCCccceecccccccCccCCCCCCCc
Q 004719 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (733)
Q Consensus 241 fdG~S~I~p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 320 (733)
|+|+|+|+|+|++++++++|+++++++++++||++.++..|.+ +
T Consensus 232 f~G~S~I~p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~---~--------------------------------- 275 (634)
T 3ilv_A 232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETV---L--------------------------------- 275 (634)
T ss_dssp EECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC----------------------------------------------
T ss_pred EcceEEEEcCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhc---C---------------------------------
Confidence 9999999999999999999986567899999999988765531 0
Q ss_pred ccccCCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHh-----Hhcc
Q 004719 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAI-----RIGH 395 (733)
Q Consensus 321 ~~~~~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~-----~~~~ 395 (733)
+..++.|+|||+.+++|||||||+++|.+++|||||||+|||++|+||++||+++++++ |+++|+++++ +|..
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~ 353 (634)
T 3ilv_A 276 TQDDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPA 353 (634)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHh--Cchhhhhhhhccccccccc
Confidence 01245788999999999999999999999999999999999999999999999999999 6899998876 4544
Q ss_pred ccCCCCCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCcc
Q 004719 396 YANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSN 475 (733)
Q Consensus 396 ~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~ 475 (733)
..+...|.+++++|+.+++|||||+.+|+..++++|+++|+.||++|++|||+++++++.+.|.+.+|++|.|+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~------ 427 (634)
T 3ilv_A 354 LQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWE------ 427 (634)
T ss_dssp SSCTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTT------
T ss_pred ccccccccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccc------
Confidence 33345677789999999999999999999999999999999999999999999999999999999889888653
Q ss_pred ccccchhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHH
Q 004719 476 VENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAA 555 (733)
Q Consensus 476 ~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~ 555 (733)
..+++.+|+|+|+||.++|.+||.. |.+|+||||+||.++||+|+|||++++++||++|+|++||+|++|++
T Consensus 428 ~~~~~~~N~qaR~R~~~l~~~A~~~--------g~lvlgTgnksE~~~Gy~T~ygD~~~~~~Pl~~l~KteVr~la~~l~ 499 (634)
T 3ilv_A 428 KDDITLQNIQARGRAPIIWMLTNVK--------QALLITTSNRSEGDVGYATMDGDTAGGIAPIAGVDKDFIRSWLRWAE 499 (634)
T ss_dssp TCHHHHHHHHHHTTHHHHHHHHHHH--------TCEEBCCCCHHHHHTTCSCTTTTTCSSBBTTTTSCHHHHHHHHHHHH
T ss_pred cCcchhhhhhHHHHHHHHHHHHHhc--------CCEEeccCchhhHhhCCccccCCcccCCcccCCCcHHHHHHHHHHHH
Confidence 4789999999999999999999876 45999999999999999999999999999999999999999999998
Q ss_pred hhcCCccchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHH
Q 004719 556 THLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKV 635 (733)
Q Consensus 556 ~~~g~p~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v 635 (733)
+..|+|+|++|++|||||||+|.+ ++|+||++| |||++||.|+++++..+++|.+|+.++.+.|+ +++++|++||
T Consensus 500 ~~~glp~l~~i~~k~pSaeL~p~~--~~q~de~~l-~~Y~~lD~~l~~~~~~~~~~~~i~~~~~~~~~--~~~~~i~~~v 574 (634)
T 3ilv_A 500 KNRNQHGLHIVNKLAPTAELRPSE--YTQTDERDL-MPYDVLARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWV 574 (634)
T ss_dssp HHSCCGGGSSCC---------------------CC-CTTTHHHHHHHHHTTSCCCHHHHHHHHHHHCS--SCHHHHHHHH
T ss_pred HcCCCchHHHHcCCCCCcCcCcCC--CCCCCcccc-CCHHHHHHHHHHHHHcCCCHHHHHHHhhhccC--CCHHHHHHHH
Confidence 888999999999999999999953 689999999 99999999999999999999999999999996 9999999999
Q ss_pred HhhhheeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccccHHHHHHhhhCCC
Q 004719 636 KQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 697 (733)
Q Consensus 636 ~~f~~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (733)
++||++|.+|||||+++||++|+++||+ |||.|+ |+|+.+++|.+||++|+..-
T Consensus 575 ~~~~~~~~~~~~Kr~~~pp~~~v~~~~~-----~pr~~~---r~Pi~~~~~~~~~~~~~~~~ 628 (634)
T 3ilv_A 575 KKFFRLWSINQWKRERLAPSFHMDDFNI-----DPRSWY---RFPILSSGFAKELNDLDQEG 628 (634)
T ss_dssp HHHHHHHHHTHHHHTTCCCBCCCSSCCC-----CTTTTC---CCCSSCCTTHHHHHHTTC--
T ss_pred HHHHHHHHHhHhccccCCCceEEeCCCC-----CCCCce---eCCcCCccHHHHHHHHHhcc
Confidence 9999999999999999999999999999 999999 99999999999999998643
No 2
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=100.00 E-value=6.8e-113 Score=983.91 Aligned_cols=532 Identities=23% Similarity=0.269 Sum_probs=455.0
Q ss_pred eeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCC-CCce
Q 004719 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW-TDGI 81 (733)
Q Consensus 3 ~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~-~~~i 81 (733)
+||||++|+|++++|+++|+++|+++|++|+++||+|||||||++|||+|+|+++++++...+++.+.+|++.++ ..++
T Consensus 6 kmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~~~~i 85 (565)
T 4f4h_A 6 KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYAASDAALAELAAQLKPFAGL 85 (565)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred ceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHHhhhCHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 389999999999999999999999999999999999999999999999999999999999999999999987643 4689
Q ss_pred eeecCcceeeC----------------ceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchH
Q 004719 82 LCSFGMPVIKG----------------SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNE 145 (733)
Q Consensus 82 ~iivG~p~~~~----------------g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~ 145 (733)
.+++|+|++.. +++|||++++.+|+|++.|+|+|||++++|+|+|||++|+..
T Consensus 86 ~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~~G~i~~~y~K~hLp~~~~f~E~r~f~~G~~~----------- 154 (565)
T 4f4h_A 86 AVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIVGGEVAGTYRKQDLPNTEVFDEKRYFATDAAP----------- 154 (565)
T ss_dssp EEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEETTEEEEEEECCSCCCSTTCCGGGTCCCCCCC-----------
T ss_pred EEEEeeeeeecccccccccceecccCCCceEEEEEEEECCEEEEEEeeeecCCCcccceeccccCCCcc-----------
Confidence 99999998653 348999999999999999999999999999999999999864
Q ss_pred HHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceE
Q 004719 146 ISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (733)
Q Consensus 146 i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~ 225 (733)
.+|+++++|||++||||+|||+ +.+.++++|||||+|||+||+..||..+|..+++++|.+|+++
T Consensus 155 --------------~v~~~~g~~iGv~IC~Dlwfpe-~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~ 219 (565)
T 4f4h_A 155 --------------YVFELNGVKFGVVICEDVWHAS-AAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLP 219 (565)
T ss_dssp --------------CEEEETTEEEEECCGGGGGSSH-HHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCC
T ss_pred --------------eeEEecCcEEEEEEeehhcccc-hhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCc
Confidence 5799999999999999999996 6778999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhhcCCCCccceecc
Q 004719 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPY 304 (733)
Q Consensus 226 ~vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~ 304 (733)
|+|+|++|++ ++++|+|+|+|+ |+|++++++++|++ +++++++|..... + .
T Consensus 220 vvy~N~vG~~-~~~~f~G~S~iidp~G~vla~~~~f~e---~~~~~d~d~~~~~----------------~--------~ 271 (565)
T 4f4h_A 220 MVYVNLVGGQ-DELVFDGGSFVLDGAGELVAKMPQFEE---GNAIVEFDGARAL----------------P--------A 271 (565)
T ss_dssp EEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBSCC---EEEEEEEETTEEC----------------C--------C
T ss_pred EEEeeeecCC-CCeEEECCcceecCCCcEEEEcccccc---ceEEEEecccccc----------------c--------c
Confidence 9999999998 778999999999 99999999999975 5777777643110 0 0
Q ss_pred cccccCccCCCCCCCcccccCCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCch
Q 004719 305 NLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDE 384 (733)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~ 384 (733)
.. .....+++|++.++++|||||++|+|++|+|||||||+|||++|+|+ ++|+ |.+
T Consensus 272 ~~---------------~~~~~~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la-------~~al--g~~ 327 (565)
T 4f4h_A 272 AI---------------APALSVEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVA-------VDAL--GAE 327 (565)
T ss_dssp CB---------------CCCCCHHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHHH--CGG
T ss_pred cc---------------ccCcchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHH-------HHHh--CCc
Confidence 00 01224678999999999999999999999999999999999999997 7888 466
Q ss_pred hhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCC
Q 004719 385 QVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 464 (733)
Q Consensus 385 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~ 464 (733)
+ |++++||+.+||+.|+++|+.||+.||++|++|+|+++++++...+....+
T Consensus 328 ~---------------------------v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~- 379 (565)
T 4f4h_A 328 R---------------------------VRAVMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFDAFRASLAAEFA- 379 (565)
T ss_dssp G---------------------------EEEEECCCTTCCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHTTTTT-
T ss_pred c---------------------------EEEEeccccccccchHHHHHHHHHHhCCceeeeecchHHHHHHHHhhhccc-
Confidence 5 589999999999999999999999999999999999999998777764322
Q ss_pred CCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcH
Q 004719 465 RPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISK 544 (733)
Q Consensus 465 ~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K 544 (733)
...+|+++||+|||+||.++|.+||.. |.|||||||+||.++||+|||||++++++||+||+|
T Consensus 380 ---------~~~~d~~~eN~qaR~R~~~l~~~an~~--------g~lvlgTgn~sE~a~Gy~T~~Gd~~~~~~pi~~l~K 442 (565)
T 4f4h_A 380 ---------GLAEDATEENIQARIRGTLLMALSNKF--------GSIVLTTGNKSEMAVGYCTLYGDMAGGFAVIKDIAK 442 (565)
T ss_dssp ---------TCCCCHHHHHHHHHHHHHHHHHHHHHH--------CCEEEECCCHHHHHHTCSCTTTTTCSSEETTTTCCH
T ss_pred ---------CccchhhHhhhcchhhHHHHHHHHhhc--------CCcccCCCchhhHhhccccccCCcccCchhccCccH
Confidence 234789999999999999999999976 569999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhcC--C--ccchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHH
Q 004719 545 QDLRTFLRWAATHLG--Y--SSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCY 620 (733)
Q Consensus 545 ~~vr~l~~~~~~~~g--~--p~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~ 620 (733)
|+|++|++|+++... . .+|++|+++||||||+| +|+||++|| ||++||.|++.....+.+|.+++..
T Consensus 443 t~v~~l~~~~~~~~~~~~~~~ip~~i~~~~psaeL~~-----~Q~ded~l~-~Y~~lD~~l~~~~~~~~~~~~i~~~--- 513 (565)
T 4f4h_A 443 TLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAELRE-----NQTDQDSLP-PYDVLDAIMRMYMEEDRPLAEIVAA--- 513 (565)
T ss_dssp HHHHHHHHHHHHTCCTTCCCSSCHHHHHC--------------------CC-CHHHHHHHHHHHTTSCCCHHHHHHT---
T ss_pred HHHHHHHHHHhhhccccCcccChHHHcCCCCCcCcCC-----CCCCcccCC-CHHHHHHHHHHHHHcCCCHHHHHHc---
Confidence 999999999887432 1 36899999999999999 899999998 9999999998877777888777543
Q ss_pred hhcCCCChhHHHHHHHhhhheeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccc
Q 004719 621 RWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFR 684 (733)
Q Consensus 621 ~~~~~~~~~~i~~~v~~f~~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~ 684 (733)
++++ +.|++|+++|.+|||||.++||++|..+-+. -...|||+.++
T Consensus 514 ----~~~~----~~v~~~~~~~~~~~~KR~~~p~g~kv~~~af----------~~d~R~Pi~~~ 559 (565)
T 4f4h_A 514 ----GYSE----ADVKRVTRLIKINEYKRRQAPVGIRVTHRAF----------GRDWRYPITSR 559 (565)
T ss_dssp ----TCCH----HHHHHHHHHHHHTHHHHTTSCCBCCCSSSCS----------STTCCCCSSCC
T ss_pred ----CCCH----HHHHHHHHHHHHhhhchhcCCCceEECCCCC----------CCCcCCccccc
Confidence 4665 4578888999999999999999999854332 22458898875
No 3
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=100.00 E-value=8.8e-108 Score=958.87 Aligned_cols=611 Identities=20% Similarity=0.252 Sum_probs=499.9
Q ss_pred ceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCce
Q 004719 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGI 81 (733)
Q Consensus 2 ~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i 81 (733)
.+||||++|+|++++|+++|+++|+++|++|+++||+||||||+++|||.|+|++.+.++.+.+.+.++.|++.++++++
T Consensus 11 g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~l~~~a~~~~i 90 (680)
T 3sdb_A 11 GFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLDLVTESADLLP 90 (680)
T ss_dssp TEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHhhCHHHHHhhHHHHHHHHHHhhcCCc
Confidence 57999999999999999999999999999999999999999999999999999999888888888889999988888999
Q ss_pred eeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccccc-c
Q 004719 82 LCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY-G 160 (733)
Q Consensus 82 ~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~-~ 160 (733)
++++|+|+++++++|||++++.+|+|+++|+|+|||++++|+|.|||+||+... ..+ ++.| ..+|||+ .
T Consensus 91 ~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~F~~G~~~~--~~i-------~~~g-~~vpfg~~~ 160 (680)
T 3sdb_A 91 VLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREFYERRQMAPGDGER--GTI-------RIGG-ADVAFGTDL 160 (680)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTEEEEEEECSCCCEETTEEGGGTEECCTTCC--SEE-------EETT-EEEEBSSCE
T ss_pred EEEEeceEEeCCCceEEEEEEeCCCEEEEEeeecCCCCCccChhhhcCCCCCCC--cee-------eecC-cccccCCce
Confidence 999999999999999999999999999999999999999999999999998641 111 1223 4789984 5
Q ss_pred ee---eeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCC-CCCC
Q 004719 161 FI---QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ-GCDG 236 (733)
Q Consensus 161 vf---~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~-G~~~ 236 (733)
+| +++++|||++||||+|||+.+++.++++|||||+|||+|++..||...|..+++.++++++++|||+|+. |+++
T Consensus 161 vf~~~~~~g~riGv~IC~Dl~fPe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~~~~G~~~ 240 (680)
T 3sdb_A 161 LFAASDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGEST 240 (680)
T ss_dssp EEEETTCTTCEEEEEEGGGGGSSSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTTSCC
T ss_pred eEeeeccCCeEEEEEEeccccccccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEECCcccCC
Confidence 67 6899999999999999998666889999999999999999999999899999999999988999998885 6666
Q ss_pred ceeeecceeEEEEcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhh----hcCCCCccceecccccccCcc
Q 004719 237 GRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQA----SCKTKIPSVAVPYNLCQPFNL 312 (733)
Q Consensus 237 ~~~~fdG~S~I~p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~ 312 (733)
++++|+|+|+|+|+|+++++++.|+. ++++++++||++.++..|.+...++... .....|++|.+++.. +..+
T Consensus 241 ~~l~f~G~S~I~p~G~vla~~~~f~~-~e~ll~adiDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 317 (680)
T 3sdb_A 241 TDLAWDGQTMIWENGALLAESERFPK-GVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRRIDFALDP--PAGD 317 (680)
T ss_dssp SSCCCCCCEEEEETTEEEEECCSSCS-SCEEEEEEEEHHHHHHHHHHCHHHHHHHHHTHHHHHTCEEEEECCCC--CCSC
T ss_pred CCeEEeccEEEEcCCEEEEECCCCCC-CCcEEEEEEcHHHHHHHHHhCCchhhhhhhhccccccceeeeeeccC--cccc
Confidence 78999999999999999999999844 2489999999999998886653332111 000236665544321 1111
Q ss_pred CCCCCCCcccccCCcch---------hhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCc
Q 004719 313 KMSLSSPLKINYHSPEE---------EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGD 383 (733)
Q Consensus 313 ~~~~~~~~~~~~~~~~e---------ei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~ 383 (733)
. .+.+++++.||.|++ +++..++.||+||++++|.+++|||||||+|||++|+++ +++++++|.|.
T Consensus 318 ~-~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~----~~a~~~lg~~~ 392 (680)
T 3sdb_A 318 I-GLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVA----THAMDREGRPR 392 (680)
T ss_dssp C-CCCSCCCSCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHH----HHHHHHTTCCG
T ss_pred c-cccccccCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHH----HHHHHHhCCCC
Confidence 1 467788888998864 566667777999999999999999999999999866654 34456665333
Q ss_pred hhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhC
Q 004719 384 EQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 463 (733)
Q Consensus 384 ~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g 463 (733)
++ +++|+||+..+++.++++|+++|+.||++|++|||+++++++.+.+...
T Consensus 393 ~~---------------------------v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~-- 443 (680)
T 3sdb_A 393 SD---------------------------ILAFALPGFATGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHP-- 443 (680)
T ss_dssp GG---------------------------EEEEECCC--------CHHHHHHHHHTCEEEECCCHHHHHHHHHHC-----
T ss_pred ce---------------------------EEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHhchh--
Confidence 33 5899999999999999999999999999999999999998887665432
Q ss_pred CCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccc-cCCCCCCCCCCCC
Q 004719 464 KRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKY-DCSSADINPIGSI 542 (733)
Q Consensus 464 ~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~-gd~~~~i~Pi~~l 542 (733)
| .+|.+..+++.+|+|+|+||.++|.+|+.. +.+|+||+|+||.++||+|+| ||.+++++||++|
T Consensus 444 ----~--~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~--------g~lvlgTgn~sE~~~Gy~T~~~gD~~~~~~Pl~~l 509 (680)
T 3sdb_A 444 ----Y--SVGEKVYDVTFENVQAGLRTDYLFRIANQR--------GGIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGV 509 (680)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHH--------TEEEEECCCHHHHHHTCSCCSSSTTCCSEETTTTS
T ss_pred ----h--cCCCCCcchhHHHhhHHHHHHHHHHHHHHc--------CCEEEeCCcHHhHhcCeeeccCCCccccccccCCC
Confidence 1 134455789999999999999999999875 459999999999999999999 9999999999999
Q ss_pred cHHhHHHHHHHHHhhcCC-----ccchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHH
Q 004719 543 SKQDLRTFLRWAATHLGY-----SSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKN 617 (733)
Q Consensus 543 ~K~~vr~l~~~~~~~~g~-----p~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~ 617 (733)
+|++||+|++|+++.... .+|++|+++||||||+|+++..+|+||++|| ||+++|.|++.....+.+|.+++.+
T Consensus 510 ~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~eL~p~~~~~~q~de~~lg-~Y~~~D~~L~~~~~~~~~~~~i~~~ 588 (680)
T 3sdb_A 510 PKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPELIPTGEEELQSSEAKVG-PFALQDFSLFQVLRYGFRPSKIAFL 588 (680)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC-------------CHHHHC-CHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcCcCCCCCCCCCCchhhcC-CHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999875433 4679999999999999976667999999999 9999999999888889999999999
Q ss_pred HHHhhcCC----------------CChhHHHHHHHhhhhee-eeccceeeecCccccc-cCCCCCCCccchhhhhhcccC
Q 004719 618 LCYRWGAR----------------LTPSEVAEKVKQFFKYY-SINRHKMTVLTPSYHA-ESYSPDDNRFDLRQFLYNARW 679 (733)
Q Consensus 618 l~~~~~~~----------------~~~~~i~~~v~~f~~~~-~~n~hK~~~~~ps~h~-~~~~~d~~r~d~r~~~~~~~~ 679 (733)
+.++|.+. |++++|..|+++||+++ ++|||||..+||++|. ...|+ +||.++ |+
T Consensus 589 ~~~a~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~f~~rf~~~~qfKr~~~p~gpkv~~~~~l-----spr~d~---r~ 660 (680)
T 3sdb_A 589 AWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFSQFKRSALPNGPKVSHGGAL-----SPRGDW---RA 660 (680)
T ss_dssp HHHHHSCTTSSCCCSSCCGGGCCCCCHHHHHHHHHHHHHHHHTTSHHHHTTCCCCCCCCTTCCC-----CTTTTC---CC
T ss_pred HHHHhccccccccccccchhhhcCCCHHHHHHHHHHHHHHHhhhccCCcccCCCCCEeCCCCCc-----CCCccc---CC
Confidence 99999754 89999999999999954 4599999999999999 88899 999999 99
Q ss_pred ccc
Q 004719 680 PYQ 682 (733)
Q Consensus 680 ~~~ 682 (733)
|.-
T Consensus 661 psd 663 (680)
T 3sdb_A 661 PSD 663 (680)
T ss_dssp CSS
T ss_pred ccc
Confidence 974
No 4
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=100.00 E-value=5.4e-96 Score=850.52 Aligned_cols=556 Identities=23% Similarity=0.272 Sum_probs=450.7
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccC--CC
Q 004719 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD--WT 78 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~--~~ 78 (733)
.+.||||++|+|++++|+++|+++|+++|++|+++|||||||||+++|||+++|++...++...+.+.|++|++.+ ..
T Consensus 2 ~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~~~~~~~~~~~~~l~~la~~~~~~~ 81 (590)
T 3n05_A 2 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEG 81 (590)
T ss_dssp CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHhhCHHHHHHHHHHHHHHHHhhhhcc
Confidence 0369999999999999999999999999999999999999999999999999999998888888999999999874 21
Q ss_pred -CceeeecCcceeeC----------ceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHH
Q 004719 79 -DGILCSFGMPVIKG----------SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEIS 147 (733)
Q Consensus 79 -~~i~iivG~p~~~~----------g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~ 147 (733)
.++++++|+|++.+ +++|||+++|.+|+|++.|+|+|||++++|+|.|||+||+..
T Consensus 82 ~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~~G~i~~~y~K~~L~~~~~f~E~r~f~~G~~~------------- 148 (590)
T 3n05_A 82 FGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTM------------- 148 (590)
T ss_dssp CTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEETTEEEEEEECCCCCSSSSCCHHHHCCCCCEE-------------
T ss_pred CCceEEEEeeEEEEcCcccccccccCCeeEEEEEEeCCEEEEEEeCccCCCCCccCccccccCCCcc-------------
Confidence 35999999998864 369999999999999999999999999999999999999854
Q ss_pred HHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEE
Q 004719 148 VALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (733)
Q Consensus 148 ~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~v 227 (733)
.+|+++++|||++||||+|||..+.+.++++|||||+|||+|++..+|..+|..++++||.+|+++||
T Consensus 149 ------------~v~~~~g~~iG~~IC~D~~f~pe~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~vv 216 (590)
T 3n05_A 149 ------------PIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTA 216 (590)
T ss_dssp ------------EEEEETTEEEEEEEGGGGGSTTSHHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSEEE
T ss_pred ------------eEEEECCEEEEEEeehhhccCChHHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEE
Confidence 57899999999999999999335788999999999999999999999988999999999999999999
Q ss_pred eecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhhcCCCCccceecccc
Q 004719 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNL 306 (733)
Q Consensus 228 yaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~~~ 306 (733)
|||++|++ ++++|+|+|+|+ |+|+++++++.|++ ++++++||++.++..+.. ...+.. ..+..+.++
T Consensus 217 ~an~~G~~-~~~~f~G~S~iidp~G~vla~~~~~~e---~~~~~didl~~~~~~~~~-~~~~~~----~~~~~~~~~--- 284 (590)
T 3n05_A 217 YLAMIGGQ-DELVFDGDSIVVDRDGEVVARAPQFSE---GCVVLDLDLPAAEAEPPT-GVVDDG----LRIDRLVIS--- 284 (590)
T ss_dssp EEECEEEE-TTEEEEBCCEEECTTSCEEEECCBTSC---EEEEEEEEECCCCSSCCC-SBCTTS----CEEEEEESC---
T ss_pred EEecccCC-CCeEEeCcEEEECCCCcEEEEcCCCCC---cEEEEEEccccccccccc-cccccc----ccccccccC---
Confidence 99999987 789999999999 99999999999864 789999999877432110 000000 000011110
Q ss_pred cccCccCCCCC-CCcc---cccCCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcC
Q 004719 307 CQPFNLKMSLS-SPLK---INYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNG 382 (733)
Q Consensus 307 ~~~~~~~~~~~-~~~~---~~~~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G 382 (733)
.. + . ++. .+.+ ...+.+.|+++.++++||+||++++|.++++|+||||+|||++|+|+ ++++ |
T Consensus 285 -~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la-------~~al--G 351 (590)
T 3n05_A 285 -EE-P-L-PAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIA-------CDAL--G 351 (590)
T ss_dssp -SS-C-C-CCCCCCCCCCBCCCCCHHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHH-------HHHH--C
T ss_pred -CC-C-C-CcccccccccccccCCcHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHH-------HHHh--C
Confidence 00 0 0 000 0001 11345678999999999999999999999999999999999999987 6776 3
Q ss_pred chhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhh
Q 004719 383 DEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 462 (733)
Q Consensus 383 ~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~ 462 (733)
.++ +++++|++.++++.+.++|+++|+.||++|++|||+++++++.+.+.
T Consensus 352 ~~~---------------------------v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~--- 401 (590)
T 3n05_A 352 AQN---------------------------VYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG--- 401 (590)
T ss_dssp GGG---------------------------EEEEECCCSSCCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHHC---
T ss_pred ccc---------------------------EEEEEECCCCCCHHHHHHHHHHHHHcCCcEEEEEChHHHHHHHHHhc---
Confidence 343 58999999999999999999999999999999999998887665553
Q ss_pred CCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCC
Q 004719 463 GKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSI 542 (733)
Q Consensus 463 g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l 542 (733)
..+++.+|+|+|+||.++|.+|+.. +.+|++|||+||..+||+|+|||++++++||+++
T Consensus 402 -------------~~~~~~~n~~ar~r~~~l~~~A~~~--------g~~vl~TGn~se~~~Gy~t~~gd~~~~~~Pl~~l 460 (590)
T 3n05_A 402 -------------LTGLAEENLQSRLRGTTLMAISNQE--------GHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDV 460 (590)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHHHHHHHH--------TCEEBCCCCHHHHHHTCCCSSCTTSCSBCTTTTS
T ss_pred -------------ccchhhhHHHHHHHHHHHHHHHHhc--------CCEEEeCCCHHHHhcCchhhcCCCccceeecCCC
Confidence 2567899999999999999999865 5699999999999999999999999999999999
Q ss_pred cHHhHHHHHHHHHhh----cC-CccchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHH
Q 004719 543 SKQDLRTFLRWAATH----LG-YSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKN 617 (733)
Q Consensus 543 ~K~~vr~l~~~~~~~----~g-~p~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~ 617 (733)
+|++||+|++|++.. .+ .++|++|+++||||||+| +|+||++|| ||++||.|++.....+.+|.++...
T Consensus 461 ~K~eVr~la~~lg~~~~~~~~~~~ip~~i~~k~ps~~L~p-----~q~de~~l~-~Y~~~D~~l~~~~~~~~~~~~i~~~ 534 (590)
T 3n05_A 461 YKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRP-----GQVDTDSLP-DYPVLDAILELYVDRDTGADAIVAA 534 (590)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTCC----------------------CHHHHHHHHHHHHTSCCCHHHHHHT
T ss_pred cHHHHHHHHHHhCcccccccccccChHHHhCCCCCCCCCC-----CCcCccccC-CHHHHHHHHHHHHHcCCCHHHHHHc
Confidence 999999999998741 23 345699999999999999 999999998 9999999998666667788777663
Q ss_pred HHHhhcCCCChhHHHHHHHhhhheeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccc
Q 004719 618 LCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFR 684 (733)
Q Consensus 618 l~~~~~~~~~~~~i~~~v~~f~~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~ 684 (733)
+++++ .|++++++|.+|+|||.++||++|..+.++. ...|+|+.++
T Consensus 535 -------~~~~~----~v~~~~~~~~~~~~KR~~~p~~~~v~~~~~~----------~~~r~p~~~~ 580 (590)
T 3n05_A 535 -------GYDRE----LVVKTLRMVDTAEYKRRQYPPGTKISAKGFG----------KDRRLPITNR 580 (590)
T ss_dssp -------TCCHH----HHHHHHHHHHHTHHHHHSSCCCCCCSSSSSC----------TTSCCCSSCC
T ss_pred -------CCCHH----HHHHHHHHHHhchhhhccCCCCceecCCCCC----------CCccCcccCC
Confidence 47754 4555666678999999999999999777763 3337777654
No 5
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=100.00 E-value=7e-52 Score=435.20 Aligned_cols=254 Identities=24% Similarity=0.363 Sum_probs=193.9
Q ss_pred CCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCC
Q 004719 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (733)
Q Consensus 325 ~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~ 404 (733)
+.|++++... ++||+||++++|++++|||||||+|||++|+|+ +++++++| .+.- |..
T Consensus 18 ~~~~~~i~~~-v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~----~~A~~~Lg--~~~~---------------~~~ 75 (279)
T 3q4g_A 18 IDPQFEIERR-VAFIKRKLTEARYKSLVLGISGGVDSTTCGRLA----QLAVEELN--QQHN---------------TTE 75 (279)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH----HHHHHHHH--HHTT---------------CSC
T ss_pred CCHHHHHHHH-HHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH----HHHHHHhC--cccc---------------cCC
Confidence 4567777774 699999999999999999999999999988874 45567775 2200 000
Q ss_pred hHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcc-cccccchhHHHHHHHH----HHHhhhCCCCceeecCCcccccc
Q 004719 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLS----LFQTLTGKRPCYKVDGGSNVENL 479 (733)
Q Consensus 405 ~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi-~~~~i~I~~~~~~~~~----~~~~~~g~~p~~~~~gg~~~~~~ 479 (733)
.-++++.||. +++.+.++|+++|+.||+ +|++|||+++++++.. .|.+. +. ..++.+..++
T Consensus 76 ------~~v~av~~p~--~~~~~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~-~~-----~~~~~~~~~~ 141 (279)
T 3q4g_A 76 ------YQFIAVRLPY--GEQKDEDEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANT-GL-----IPSDPAKVDF 141 (279)
T ss_dssp ------CEEEEEECCS--SSCSCHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHH-TC-----SCSSCCCHHH
T ss_pred ------ceEEEEEecC--CChHHHHHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhh-cc-----cccCCCcccc
Confidence 0058999994 345568999999999999 8999999999998876 55543 11 1123456889
Q ss_pred chhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcC
Q 004719 480 GLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLG 559 (733)
Q Consensus 480 a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g 559 (733)
+.+|+|||+||.++|.+||.+ |.+|+||+|+||.++||+|||||+++|++||++++|++||+|++| +|
T Consensus 142 ~~~NiqaR~R~~~Ly~~A~~~--------g~lVlgTgn~sE~~~Gy~TkyGD~~~di~Pl~dl~Kt~Vr~LA~~----lg 209 (279)
T 3q4g_A 142 IKGNVKARARMVAQYEIAGYV--------GGLVLGTDHSAENITGFYTKFGDGACDLAPLFGLNKRQVRLLAKT----LG 209 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------TEEEBCCCCHHHHHHTCSCTTTTTCCSBCTTTTCCHHHHHHHHHH----TT
T ss_pred hhhhHHHHHHHHHHHHHHHHC--------CCEEecCccHHhhhccchhhcCCcccceeecCCCcHHHHHHHHHH----hC
Confidence 999999999999999999986 459999999999999999999999999999999999999999777 67
Q ss_pred CccchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhh
Q 004719 560 YSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFF 639 (733)
Q Consensus 560 ~p~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~ 639 (733)
+| ++|++|||||||||.. .+|+||++|||||++||.|+.- ..++ +++.++|+
T Consensus 210 iP--~~i~~K~PSa~L~~~~--~~q~DE~~lg~~Y~~lD~~L~~--------------------~~~~-~~~~~~i~--- 261 (279)
T 3q4g_A 210 AP--EQLVYKTPTADLEELA--PQKADEAALNLTYEQIDDFLEG--------------------KAVP-AEVSQRLV--- 261 (279)
T ss_dssp CC--HHHHTCCCSCCC---------------CCCHHHHHHHHHT--------------------CCCC-HHHHHHHH---
T ss_pred Cc--HHHhcCCCCCCcCCCC--CCCCCHHHcCCCHHHHHHHHhc--------------------CCCC-HHHHHHHH---
Confidence 66 9999999999997532 3899999999999999999841 1344 34444444
Q ss_pred heeeeccceeeecCc
Q 004719 640 KYYSINRHKMTVLTP 654 (733)
Q Consensus 640 ~~~~~n~hK~~~~~p 654 (733)
++|.+|+|||..+|+
T Consensus 262 ~~~~~~~hKr~~~p~ 276 (279)
T 3q4g_A 262 AIYHATQHKRQPIPT 276 (279)
T ss_dssp HHHHHTHHHHSCCCC
T ss_pred HHHHHhHhccCCCCC
Confidence 578899999985443
No 6
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=100.00 E-value=3.9e-49 Score=414.48 Aligned_cols=252 Identities=27% Similarity=0.402 Sum_probs=199.1
Q ss_pred CCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCC
Q 004719 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (733)
Q Consensus 325 ~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~ 404 (733)
+.+++++... +.||+||++++|++++|||||||+||+++|+|+ +++++++| .+++ +.
T Consensus 24 ~~~~~~i~~~-v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La----~~A~daLG--~~~~---------------~~- 80 (285)
T 3dpi_A 24 FDARDEAERR-IGFVADYLRTAGLRACVLGISGGIDSSTAGRLA----QLAVERLR--ASGY---------------DA- 80 (285)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH----HHHHHHHH--HTTC---------------CC-
T ss_pred CCHHHHHHHH-HHHHHHHHHHcCCCcEEEEccCChhHHHHHHHH----HHHHHHhc--ccCc---------------cc-
Confidence 4566677665 699999999999999999999999999988775 44577775 3321 00
Q ss_pred hHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhh
Q 004719 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIG-SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQN 483 (733)
Q Consensus 405 ~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lG-i~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~N 483 (733)
.++++.||. +++.+.++|+.+|+.|| ++|++|||+++++++.+.+... |.++ ++....+++.+|
T Consensus 81 -------~viav~~p~--~~~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~~-g~~~-----~~~~~~~~~~~N 145 (285)
T 3dpi_A 81 -------RFVAMRLPY--GAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAAG-GLAY-----LDHAQQDFVLGN 145 (285)
T ss_dssp -------EEEEEECCS--CC---CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHT-TCCC-----CCHHHHHHHHHH
T ss_pred -------EEEEEEcCC--CCHHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHHhc-Cccc-----cccCCCchhhhh
Confidence 047888874 56678899999999999 7999999999999998887752 4332 112236789999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccc
Q 004719 484 IQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSL 563 (733)
Q Consensus 484 iqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l 563 (733)
+|+|+||.++|.+||.. |++|+||||+||..+||+|+|||++++++||++++|+||+++++| +|+|
T Consensus 146 iqaR~Rm~~L~~~A~~~--------g~lVlgTgn~sE~~~Gy~T~~GD~~~~~~Pl~~l~K~eV~~la~~----lg~p-- 211 (285)
T 3dpi_A 146 IKARERMIAQYAVAGAR--------NGVVIGTDHAAESVMGFFTKFGDGGADVLPLAGLTKRRVRALARM----LGAD-- 211 (285)
T ss_dssp HHHHHHHHHHHHHHHHT--------TEEEBCCCCHHHHHHHHHHCCCCCCCSBCTTTTCCHHHHHHHHHH----TTCC--
T ss_pred HHHHHHHHHHHHHHHHC--------CCEEEeCccHHhhhCCcccccCCCceeEeeecCCcHHHHHHHHHH----cCCC--
Confidence 99999999999999875 469999999999999999999999999999999999999999665 7766
Q ss_pred hhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheee
Q 004719 564 AEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYS 643 (733)
Q Consensus 564 ~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~ 643 (733)
++|++||||||||++. .+|+||++|||||++||.|+.- ..++ +++.++|. ++|.
T Consensus 212 ~~i~~k~pSa~L~~l~--~~q~DE~~lg~~Y~~lD~~L~~--------------------~~~~-~~~~~~i~---~~~~ 265 (285)
T 3dpi_A 212 EPLVLKTPTADLETLR--PQRPDEHAYGITYEQIDDFLEG--------------------KPMD-DAVAETVL---RFYD 265 (285)
T ss_dssp HHHHTCCCHHHHGGGS--CSCC--CCCCCCHHHHHHHHHT--------------------CSCC-HHHHHHHH---HHHH
T ss_pred HHHhcCCCCCCcccCC--CCCCcHHHcCCCHHHHHHHHcC--------------------CCCC-HHHHHHHH---HHHH
Confidence 9999999999988642 2899999999999999999741 1344 34444444 5788
Q ss_pred eccceeeecCcc
Q 004719 644 INRHKMTVLTPS 655 (733)
Q Consensus 644 ~n~hK~~~~~ps 655 (733)
+|+|||. +||.
T Consensus 266 ~~~hKR~-~p~~ 276 (285)
T 3dpi_A 266 ATRHKRA-LPYT 276 (285)
T ss_dssp HHHHHHH-CC--
T ss_pred Hhhhccc-CCCC
Confidence 9999998 4554
No 7
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=100.00 E-value=3.5e-48 Score=408.12 Aligned_cols=250 Identities=26% Similarity=0.366 Sum_probs=196.8
Q ss_pred CCcchhhhcCcchhhhHHhhhcC-CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhc--CchhhhhhHhHhccccCCCC
Q 004719 325 HSPEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISN--GDEQVKADAIRIGHYANGEF 401 (733)
Q Consensus 325 ~~~~eei~~~~~~~L~dyl~~sg-~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~--G~~~v~~~~~~~~~~~~~~~ 401 (733)
+.|++++.. .++||+||++++| .+++|||||||+|||++|+|+ +++.+++|. |.+++
T Consensus 17 ~~~~~~i~~-~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~----~~a~~~lg~~~~~~~~--------------- 76 (275)
T 1wxi_A 17 INAEEEIRR-SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLC----QMAINELRLETGNESL--------------- 76 (275)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHH----HHHHHHHHHHHCCTTC---------------
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHH----HHHHHHhccccccccc---------------
Confidence 367778877 6899999999999 999999999999999988875 444555531 01000
Q ss_pred CCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccc
Q 004719 402 PTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480 (733)
Q Consensus 402 p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi-~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a 480 (733)
-+++++||. .+..+.++|+++|+.||+ +|++|||+++++++.+.+.. .|.+ ..+++
T Consensus 77 ----------~v~av~~~~--~~~~~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~-~g~~----------~~~~~ 133 (275)
T 1wxi_A 77 ----------QFIAVRLPY--GVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALRE-AGIE----------LSDFV 133 (275)
T ss_dssp ----------EEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH-HTCC----------CCHHH
T ss_pred ----------eEEEEEeCC--CCccCHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHh-cCCC----------CCCch
Confidence 057999984 344579999999999999 99999999999998888776 3432 36789
Q ss_pred hhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCC
Q 004719 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY 560 (733)
Q Consensus 481 ~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~ 560 (733)
.+|+|+|+||.++|.+|+.. +.+|+||+|++|..+||+|+|||++++++||++++|+|||+|++| +|+
T Consensus 134 ~~N~~aR~r~~~l~~~A~~~--------g~lvlgTgn~~E~~~Gy~t~~gd~~~~~~PL~~l~K~eVr~la~~----lgl 201 (275)
T 1wxi_A 134 RGNEKARERMKAQYSIAGMT--------SGVVVGTDHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAA----LAC 201 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--------TEEEBCCCCHHHHTTTCSCTTTTTCCSBCTTTTCCHHHHHHHHHH----TTC
T ss_pred hhhhhhhHHHHHHHHHHHHC--------CCEEEECccHHHHccCcccccCCCccceeeccCCCHHHHHHHHHH----hCC
Confidence 99999999999999999875 569999999999999999999999999999999999999999665 787
Q ss_pred ccchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhh
Q 004719 561 SSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFK 640 (733)
Q Consensus 561 p~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~ 640 (733)
| +.|++|||||||++.. .+|+||++|||||++||.|++.+ ..+ ++++++|++
T Consensus 202 p--~~i~~k~psa~L~~~~--~~q~De~~lg~~Y~~lD~~l~~~--------------------~~~-~~~~~~i~~--- 253 (275)
T 1wxi_A 202 P--EHLYKKAPTADLEDDR--PSLPDEVALGVTYDNIDDYLEGK--------------------NVP-QQVARTIEN--- 253 (275)
T ss_dssp C--GGGTSCC---------------CHHHHSSCHHHHHHHHTTC--------------------CCC-HHHHHHHHH---
T ss_pred c--HhhccCCCCCcccCCC--CCCCCHHHhCCCHHHHHHHHHhc--------------------CCC-HHHHHHHHH---
Confidence 7 8999999999997621 38999999999999999998621 233 455566655
Q ss_pred eeeeccceeeecCccccc
Q 004719 641 YYSINRHKMTVLTPSYHA 658 (733)
Q Consensus 641 ~~~~n~hK~~~~~ps~h~ 658 (733)
+|.+|+||| ++||++|-
T Consensus 254 ~~~~~~~Kr-~~p~~~~~ 270 (275)
T 1wxi_A 254 WYLKTEHKR-RPPITVFD 270 (275)
T ss_dssp HHHHTGGGG-SSCCCTTC
T ss_pred HHHHhHHhc-CCCCCCcc
Confidence 688999999 68998874
No 8
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=100.00 E-value=3.2e-47 Score=400.46 Aligned_cols=247 Identities=30% Similarity=0.470 Sum_probs=205.1
Q ss_pred CcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCc--hhhhhhHhHhccccCCCCCC
Q 004719 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGD--EQVKADAIRIGHYANGEFPT 403 (733)
Q Consensus 326 ~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~--~~v~~~~~~~~~~~~~~~p~ 403 (733)
.+++++.. .++||+||++++|.++++||||||+|||++|+|+ +++.+++|... .+
T Consensus 17 ~~~~~i~~-~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La----~~a~~~lg~~~~~~~------------------ 73 (271)
T 1kqp_A 17 DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLA----QLAVESIREEGGDAQ------------------ 73 (271)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH----HHHHHHHHHTTCCCE------------------
T ss_pred CHHHHHHH-HHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHH----HHHHHHhcccCCCce------------------
Confidence 56677777 6999999999999999999999999999998875 33445554211 11
Q ss_pred ChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchh
Q 004719 404 DSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ 482 (733)
Q Consensus 404 ~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi-~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~ 482 (733)
+++++||.. +..+.++|+++|+.||+ +|++++|+++++++.+.+...+|.+ ..+++.+
T Consensus 74 ---------v~av~~~~~--~~~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~----------~~~~~~~ 132 (271)
T 1kqp_A 74 ---------FIAVRLPHG--TQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQ----------LTDFNKG 132 (271)
T ss_dssp ---------EEEEECCSS--SCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCC----------CCHHHHH
T ss_pred ---------EEEEEeCCC--CCCCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCC----------Ccchhhh
Confidence 578999842 33468999999999999 9999999999999888887765443 3678899
Q ss_pred hHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCcc
Q 004719 483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSS 562 (733)
Q Consensus 483 NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~ 562 (733)
|+|+|+||.++|.+|+.. +.+|+||+|++|...||+|+|||++++++||++++|++||+|++| +|+|
T Consensus 133 N~~aR~r~~~l~~~A~~~--------g~lvl~tgn~~E~~~Gy~t~~gd~~~~~~Pl~~l~K~eVr~la~~----lglp- 199 (271)
T 1kqp_A 133 NVKARTRMIAQYAIGGQE--------GLLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKE----LGAP- 199 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCEEBCCCCHHHHTTTCSCTTTTTCCSBCTTTTCCHHHHHHHHHH----TTCC-
T ss_pred hHHHHHHHHHHHHHHHHC--------CCEEEECccHHHhccCCccccccccccccccccCCHHHHHHHHHH----cCCC-
Confidence 999999999999999865 468999999999999999999999999999999999999999655 7877
Q ss_pred chhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhhee
Q 004719 563 LAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYY 642 (733)
Q Consensus 563 l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~ 642 (733)
+.|++|||||||++. ..+|+||++|||||++||.|++. ...+ ++++++|++ +|
T Consensus 200 -~~i~~k~psa~L~~~--~~~q~De~~lg~~Y~~ld~~l~~--------------------~~~~-~~~~~~v~~---~~ 252 (271)
T 1kqp_A 200 -ERLYLKEPTADLLDE--KPQQSDETELGISYDEIDDYLEG--------------------KEVS-AKVSEALEK---RY 252 (271)
T ss_dssp -THHHHSCCBCCCCSS--STTCBHHHHHSSCHHHHHHHHTT--------------------CCCC-HHHHHHHHH---HH
T ss_pred -HhhccCCCCcccccC--CCCCCCHHHhCCCHHHHHHHHHh--------------------cCCC-HHHHHHHHH---HH
Confidence 899999999999762 13899999999999999999862 1233 455555554 68
Q ss_pred eeccceeeecCcccc
Q 004719 643 SINRHKMTVLTPSYH 657 (733)
Q Consensus 643 ~~n~hK~~~~~ps~h 657 (733)
.+|+||| ++||.+|
T Consensus 253 ~~~~~Kr-~~p~~~~ 266 (271)
T 1kqp_A 253 SMTEHKR-QVPASMF 266 (271)
T ss_dssp HHTGGGG-SSCBCTT
T ss_pred HHhHHhc-CCCCCCc
Confidence 8999999 6899876
No 9
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=100.00 E-value=7.9e-46 Score=385.00 Aligned_cols=238 Identities=27% Similarity=0.351 Sum_probs=200.9
Q ss_pred chhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHH
Q 004719 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (733)
Q Consensus 328 ~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~ 407 (733)
.++....+..||+||++++|.++++|+||||+||+++|+|+ .++. .+
T Consensus 9 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~-------~~~~---~~----------------------- 55 (249)
T 3fiu_A 9 PKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLA-------VKTG---LP----------------------- 55 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHH-------HHTT---SC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH-------HHhC---CC-----------------------
Confidence 35677788999999999999999999999999999999987 3432 22
Q ss_pred HHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHH
Q 004719 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (733)
Q Consensus 408 ~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR 487 (733)
.++++|++..+++.+.++|+++|+.||++|++++|+++++++.+.+...++. +.++++++.+|+|+|
T Consensus 56 -----~~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Ni~~r 122 (249)
T 3fiu_A 56 -----TTALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTNL--------QNNRQLVIKGNAQAR 122 (249)
T ss_dssp -----EEEEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC--------------CHHHHHHHHHH
T ss_pred -----CEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhccC--------CCCcChhHHHHHHHH
Confidence 2489999877888999999999999999999999999998887777543221 124588999999999
Q ss_pred HHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhh
Q 004719 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (733)
Q Consensus 488 ~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~ 567 (733)
+||.++|.+|+.. |++|+||||+||..+||+|+|||++++++||++++|+|||+|++| +|+| ++|+
T Consensus 123 ~R~~~l~~~A~~~--------g~~vl~TGn~sE~~~G~~t~~gd~~~~i~PL~~l~K~eVr~lA~~----lglp--~~i~ 188 (249)
T 3fiu_A 123 LRMMYLYAYAQQY--------NRIVIGTDNACEWYMGYFTKFGDGAADILPLVNLKKSQVFELGKY----LDVP--KNIL 188 (249)
T ss_dssp HHHHHHHHHHHHH--------TEEEBCCCCHHHHHHTCSCTTTTTCCSBCTTTTCCHHHHHHHHHH----TTCC--HHHH
T ss_pred HHHHHHHHHHHHc--------CCEEEECCCHHHHhcCchhccCCCCcceeecccCcHHHHHHHHHH----cCCc--HHHc
Confidence 9999999999875 569999999999999999999999999999999999999999665 7877 8999
Q ss_pred cCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeeccc
Q 004719 568 AAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRH 647 (733)
Q Consensus 568 ~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~h 647 (733)
+||||||||| +|+||++|||||++||.|+.- ++++ +++ |+++.++|.+|+|
T Consensus 189 ~k~psa~L~~-----~q~de~~lg~~y~~ld~~l~~--------------------~~~~-~~~---~~~i~~~~~~~~~ 239 (249)
T 3fiu_A 189 DKAPSAGLWQ-----GQTDEDEMGVTYQEIDDFLDG--------------------KQVS-AKA---LERINFWHNRSHH 239 (249)
T ss_dssp HSCCCCCSST-----TCCHHHHHTSCHHHHHHHHHT--------------------CCCC-HHH---HHHHHHHHHTTHH
T ss_pred cCCCCCccCC-----CCCCHHHcCCCHHHHHHHHhc--------------------CCCC-HHH---HHHHHHHHHHhHh
Confidence 9999999999 999999999999999999852 1344 344 4444457889999
Q ss_pred eeeecCcc
Q 004719 648 KMTVLTPS 655 (733)
Q Consensus 648 K~~~~~ps 655 (733)
||.+ ||.
T Consensus 240 Kr~~-~~~ 246 (249)
T 3fiu_A 240 KRKL-ALT 246 (249)
T ss_dssp HHSC-CBC
T ss_pred cccC-CCC
Confidence 9984 444
No 10
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=100.00 E-value=4.7e-45 Score=379.00 Aligned_cols=243 Identities=25% Similarity=0.337 Sum_probs=187.8
Q ss_pred cchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChH
Q 004719 327 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSR 406 (733)
Q Consensus 327 ~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~ 406 (733)
..++++..+++||+||++++|.++++|+||||+||+++|+|+ .+++| .+
T Consensus 5 ~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~~g--~~---------------------- 53 (249)
T 3p52_A 5 DWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------KRALK--EN---------------------- 53 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHH-------HHHHT--TS----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHH-------HHHcC--Cc----------------------
Confidence 356889999999999999999999999999999999999987 45553 22
Q ss_pred HHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHH
Q 004719 407 EFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQA 486 (733)
Q Consensus 407 ~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~Niqa 486 (733)
+++++|++..+++.+.++|+++|+.||++|++++|+++++++.+.+. ..++...+|+|+
T Consensus 54 ------v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~---------------~~~~~~~~n~~~ 112 (249)
T 3p52_A 54 ------VFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSE---------------NTTLVSLGNFAA 112 (249)
T ss_dssp ------EEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECCCHHHHHHHHTTCS---------------CCCHHHHHHHHH
T ss_pred ------EEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHHhcc---------------ccCCccHhHHHH
Confidence 58999999888889999999999999999999999998776543221 135678999999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhh
Q 004719 487 RIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEI 566 (733)
Q Consensus 487 R~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i 566 (733)
|+||.++|.+|+.. |.+|++|+|+||.++||+|+|||+.++++||++++|+||+++++| +|+| ++|
T Consensus 113 r~R~~~l~~~A~~~--------g~~vl~tgn~se~~~g~~t~~gd~~~~i~PL~~l~K~eV~~la~~----~gip--~~i 178 (249)
T 3p52_A 113 RIRMSLLYDYSALK--------NSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKSEIYALAKY----LNLH--ENF 178 (249)
T ss_dssp HHHHHHHHHHHHHT--------TEEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHHHHHHHHH----TTCC--HHH
T ss_pred HHHHHHHHHHHHHC--------CCeEEeCCCHHHHHccchhhhccccCccccccCCcHHHHHHHHHH----cCCc--HHh
Confidence 99999999999875 468999999999999999999999999999999999999999765 7777 899
Q ss_pred hcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeecc
Q 004719 567 EAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINR 646 (733)
Q Consensus 567 ~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~ 646 (733)
+++|||||||| +|+||++|||||++||.|+... .++.++-. .++++ +.|+++.+++.+|+
T Consensus 179 ~~k~psa~L~~-----~q~de~~lg~~y~~ld~~l~~~----~~~~~~~~-------~~~~~----~~~~~i~~~~~~~~ 238 (249)
T 3p52_A 179 IKKAPSADLWE-----NQSDEADLGFSYTKIDEGLKAL----ETNDEKLL-------RTLDP----SLIAMLKNRMQKNA 238 (249)
T ss_dssp HHC----------------------CCCCHHHHHHHHH----HTTCHHHH-------HHSCH----HHHHHHHHHHHHTG
T ss_pred cCCCCCcccCC-----CCCCHHHcCCCHHHHHHHHHHc----cChHHHHH-------cCCCH----HHHHHHHHHHHhhh
Confidence 99999999999 8999999999999999998643 22222211 13454 34666667899999
Q ss_pred ceeeecCccc
Q 004719 647 HKMTVLTPSY 656 (733)
Q Consensus 647 hK~~~~~ps~ 656 (733)
|||+ +||..
T Consensus 239 ~kr~-~p~~~ 247 (249)
T 3p52_A 239 FKGK-MPEIL 247 (249)
T ss_dssp GGGS-CCEEC
T ss_pred hccC-CCCCC
Confidence 9998 67754
No 11
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=100.00 E-value=4.1e-44 Score=375.05 Aligned_cols=239 Identities=25% Similarity=0.273 Sum_probs=206.0
Q ss_pred eeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccc-----hhhhHHHHHHHhccCC
Q 004719 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDT-----VTHAWECLKDLLLGDW 77 (733)
Q Consensus 3 ~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~-----~~~~~~~L~~La~~~~ 77 (733)
|||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||.+.+......+ .....+.|+++++
T Consensus 1 M~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~--- 77 (262)
T 3ivz_A 1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVAR--- 77 (262)
T ss_dssp -CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHH---
T ss_pred CeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHH---
Confidence 49999999999999999999999999999999999999999999999987653211111 1134455666665
Q ss_pred CCceeeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccc
Q 004719 78 TDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (733)
Q Consensus 78 ~~~i~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vp 156 (733)
++++++++|++++.++++||+++++. +| +++.|+|+||+ |.|.+||++|+..
T Consensus 78 ~~~~~iv~G~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~----~~E~~~f~~G~~~---------------------- 130 (262)
T 3ivz_A 78 DTGVYIVAGTAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLF----YREKFFFEPGDLG---------------------- 130 (262)
T ss_dssp HHCCEEEEEEEEEETTEEEEEEEEEETTE-EEEEEECSSCC----GGGGGTCBCCCSC----------------------
T ss_pred HcCcEEEEeEEEeeCCcEEEEEEEEcCCe-eEEEEeecccC----CchhceEeCCCCC----------------------
Confidence 47999999999999999999999996 78 99999999995 5799999999722
Q ss_pred cccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCC
Q 004719 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (733)
Q Consensus 157 fG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~ 236 (733)
..+|+++++|||+.||||+|||+ +.+.++.+|||+|++||+|+.. +|..+++.||.+|++++++||++|.+
T Consensus 131 --~~v~~~~~~~ig~~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~- 201 (262)
T 3ivz_A 131 --FRVFDLGFMKVGVMICFDWFFPE-SARTLALKGADVIAHPANLVMP-----YAPRAMPIRALENKVYTVTADRVGEE- 201 (262)
T ss_dssp --SCEEECSSCEEEECCGGGGGSHH-HHHHHHHTTCSEEEEEECCCSS-----CHHHHHHHHHHHHTCEEEEEECCSEE-
T ss_pred --ceEEEECCEEEEEEEecCCCchH-HHHHHHHCCCCEEEEcCCCCch-----HHHHHHHHHHHhcCcEEEEECCCCcC-
Confidence 15789999999999999999997 5778999999999999998763 56778999999999999999999988
Q ss_pred ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004719 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 237 ~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
++..|+|+|+|+ |+|+++++++.++ .++++++||++.++..|.+
T Consensus 202 ~~~~~~G~S~ii~p~G~il~~~~~~~---~~~~~~~id~~~~~~~R~~ 246 (262)
T 3ivz_A 202 RGLKFIGKSLIASPKAEVLSMASETE---EEVGVAEIDLSLVRNKRIN 246 (262)
T ss_dssp TTEECCCCCEEECTTSCEEEECCSSC---CEEEEEECCHHHHHCCEEE
T ss_pred CCceEeeeEEEECCCCCEeecCCCCC---ceEEEEEEcHHHHHHHhhc
Confidence 567899999999 9999999998874 3699999999999988854
No 12
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.4e-43 Score=375.18 Aligned_cols=246 Identities=20% Similarity=0.169 Sum_probs=213.1
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccch-hhhHHHHHHHhccCCCC
Q 004719 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-THAWECLKDLLLGDWTD 79 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~-~~~~~~L~~La~~~~~~ 79 (733)
++.||||++|+++..+|++.|++++.+++++|+++|||||||||++++||.+.+++...... ....+.|+++++. +
T Consensus 18 ~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~---~ 94 (281)
T 3p8k_A 18 GSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEK---Y 94 (281)
T ss_dssp TSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHH---H
T ss_pred CCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhh---C
Confidence 35799999999999999999999999999999999999999999999999988765544443 3455667777764 7
Q ss_pred ceeeecCcc-eeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccc
Q 004719 80 GILCSFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (733)
Q Consensus 80 ~i~iivG~p-~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpf 157 (733)
++++++|.+ +..++++||++++|. +|++++.|+|+||++. |.|.+||++|+..
T Consensus 95 ~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~~----------------------- 149 (281)
T 3p8k_A 95 KVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEYV----------------------- 149 (281)
T ss_dssp TCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSSC-----------------------
T ss_pred CeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCCC-----------------------
Confidence 999999974 667889999999998 9999999999999863 6799999999753
Q ss_pred ccceeee-ehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCC
Q 004719 158 GYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (733)
Q Consensus 158 G~~vf~~-~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~ 236 (733)
..+|++ +++|||+.||||+|||+ +.+.++++|||+|++|++|+... ...|..+++.||.+|++++++||++|.+
T Consensus 150 -~~v~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~Gadli~~psa~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~- 224 (281)
T 3p8k_A 150 -AEPFQLSDGTYVTQLICYDLRFPE-LLRYPARSGAKIAFYVAQWPMSR--LQHWHSLLKARAIENNMFVIGTNSTGFD- 224 (281)
T ss_dssp -CCCEECTTCCEEEEEEGGGGGCTH-HHHHHHHTTCCEEEEEECCBGGG--HHHHHHHHHHHHHHHTSEEEEEECEEEC-
T ss_pred -ceeEEeCCCcEEEEEEecCCCCcH-HHHHHHHCCCCEEEECCCCCCcc--HHHHHHHHHHHHHHcCCEEEEEccCcCC-
Confidence 147899 99999999999999996 56789999999999999998653 4567778999999999999999999988
Q ss_pred ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004719 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 237 ~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
++..|+|+|+|+ |+|+++++ +.++ +++++++||++.++..|.+
T Consensus 225 ~~~~~~G~S~ii~p~G~vl~~-~~~~---e~~l~~~id~~~~~~~R~~ 268 (281)
T 3p8k_A 225 GNTEYAGHSIVINPNGDLVGE-LNES---ADILTVDLNLNEVEQQREN 268 (281)
T ss_dssp SSCEEECCCEEECTTSCEEEE-CCSS---CEEEEEEEETHHHHHHHHH
T ss_pred CCcEEeeeEEEECCCCCEEEe-cCCC---CeEEEEEEcHHHHHHHHHh
Confidence 568899999999 99999999 6553 4799999999999877743
No 13
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=100.00 E-value=5.2e-44 Score=378.73 Aligned_cols=244 Identities=21% Similarity=0.220 Sum_probs=202.6
Q ss_pred ceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccc-c-cccchhhhHHHHHHHhccCCCC
Q 004719 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-L-ELDTVTHAWECLKDLLLGDWTD 79 (733)
Q Consensus 2 ~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~-~-~~~~~~~~~~~L~~La~~~~~~ 79 (733)
.+||||++|+++..+|+++|++++.+++++|+++|||||||||+++|||.+.|+. . .........+.|+++++ ++
T Consensus 19 ~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~---~~ 95 (283)
T 3hkx_A 19 SHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIAR---DR 95 (283)
T ss_dssp EEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHH---HT
T ss_pred CccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHH---Hh
Confidence 5799999999999999999999999999999999999999999999999988621 0 01112234455666665 48
Q ss_pred ceeeecCcceeeC-ceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccc
Q 004719 80 GILCSFGMPVIKG-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (733)
Q Consensus 80 ~i~iivG~p~~~~-g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpf 157 (733)
++++++|++++.+ +++||++++|. +|++++.|+|+||++. +|.+||++|+..
T Consensus 96 ~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~---~E~~~f~~G~~~----------------------- 149 (283)
T 3hkx_A 96 GIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP---EEKAAFVPGEQP----------------------- 149 (283)
T ss_dssp TSEEEECCBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHH---HHHHHSCCCCSC-----------------------
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCc---CchhhccCCCCC-----------------------
Confidence 9999999998875 89999999998 9999999999999753 699999999752
Q ss_pred ccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCc
Q 004719 158 GYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGG 237 (733)
Q Consensus 158 G~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~ 237 (733)
..+|+++++|||+.||||+|||+ +.+.++.+|||+|++|++|+...+ .+|..+++.||.+|++++++||++|.+ +
T Consensus 150 -~~v~~~~~~~ig~~IC~D~~fpe-~~r~l~~~Ga~li~~ps~~~~~~~--~~~~~~~~~rA~en~~~vv~~n~~G~~-~ 224 (283)
T 3hkx_A 150 -PPVLSWGGRQLSLLVCYDVEFPE-MVRAAAARGAQLVLVPTALAGDET--SVPGILLPARAVENGITLAYANHCGPE-G 224 (283)
T ss_dssp -CCEEEETTEEEEECCGGGGGSHH-HHHHHHHTTCSEEEEECCCBSCCT--HHHHTHHHHHHHHHTCEEEEECBEEEE-T
T ss_pred -ceEEEECCEEEEEEEecCcCCHH-HHHHHHHCCCCEEEECCCCCCccc--HHHHHHHHHHHHHhCCEEEEEccccCC-C
Confidence 04789999999999999999996 678899999999999999987554 467778999999999999999999988 5
Q ss_pred eeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004719 238 RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 238 ~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
+..|+|.|+|+ |+|+++++++ ++ +++++++||++.++..|.+
T Consensus 225 ~~~~~G~S~ii~p~G~vl~~~~-~~---e~~l~a~id~~~~~~~R~~ 267 (283)
T 3hkx_A 225 GLVFDGGSVVVGPAGQPLGELG-VE---PGLLVVDLPDQSQDAGSDS 267 (283)
T ss_dssp TEEEECCCEEECTTSCEEEECC-SS---CEEEEEEEEC---------
T ss_pred CeEEeeEEEEECCCCCEEEecC-CC---CeEEEEEECHHHHHHHHHh
Confidence 68899999999 9999999997 53 4799999999999988854
No 14
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=100.00 E-value=1.1e-42 Score=365.69 Aligned_cols=253 Identities=24% Similarity=0.248 Sum_probs=212.4
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004719 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+++...+.+||++|+++++.++++|+||||+||+++|+++ .++. ..+
T Consensus 6 ~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~-------~~~~---~~~----------------------- 52 (268)
T 1xng_A 6 QKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------QKVF---KEN----------------------- 52 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHHH---GGG-----------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHH-------HHhC---CCC-----------------------
Confidence 5777889999999999999999999999999999999887 4443 122
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHH
Q 004719 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~ 488 (733)
+++++|++..++..+.++|+++|+.||++|++++|+++++++.+.+.. .++++.+|+|+|+
T Consensus 53 ----v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~---------------~~~~~~~n~~~r~ 113 (268)
T 1xng_A 53 ----AHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKD---------------ASLTRKGNFCARL 113 (268)
T ss_dssp ----EEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHCTT---------------CCHHHHHHHHHHH
T ss_pred ----EEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHhhh---------------cCCchHHHHHHHH
Confidence 589999988888999999999999999999999999887766554432 1457899999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhc
Q 004719 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEA 568 (733)
Q Consensus 489 R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~ 568 (733)
|+.+++.+|+.. |.+|++|+|.+|..+||+|+|||+..+++||++++|++|+++++| +|+| +.|++
T Consensus 114 R~~~l~~~A~~~--------g~~vl~tg~~~E~~~Gy~t~~gd~~~~i~PL~~l~K~ev~~la~~----~gip--~~i~~ 179 (268)
T 1xng_A 114 RMAFLYDYSLKS--------DSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARR----LNIP--KKILN 179 (268)
T ss_dssp HHHHHHHHHHHH--------TCEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHHHHHHHHH----TTCC--HHHHT
T ss_pred HHHHHHHHHHHC--------CCEEEECCcHHHHhcCcccccCCCCeeEEecCCCCHHHHHHHHHH----cCCc--HHHhc
Confidence 999999999865 468899999999999999999999999999999999999999765 7777 88999
Q ss_pred CCCCcccccccccccccccccccCChhhhhhhccccc--ccc--cchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeee
Q 004719 569 APPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRK--VFH--CGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSI 644 (733)
Q Consensus 569 ~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~--~~~--~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~ 644 (733)
+||||||+| +|+||++||++|++||.|++.+| .++ ++|.++..+ ++++ +.|++|+++|.+
T Consensus 180 k~psa~l~~-----~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~~~~~i~~~-------~~~~----~~~~~~~~~~~~ 243 (268)
T 1xng_A 180 KPPSADLFV-----GQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQL-------GYDE----ILVKNITSRIQK 243 (268)
T ss_dssp SCCCCCSST-----TCCHHHHHSSCHHHHHHHHHHHHHHSSSSCCCHHHHHHT-------TCCH----HHHHHHHHHHHH
T ss_pred CCCCcCcCC-----CCcchhhcCCCHHHHHHHHHHHHHHhhccCCCHHHHHHc-------CCCH----HHHHHHHHHHHH
Confidence 999999999 89999999999999999998763 222 555555441 3443 338999999999
Q ss_pred ccceeeecCccccccCCCCC
Q 004719 645 NRHKMTVLTPSYHAESYSPD 664 (733)
Q Consensus 645 n~hK~~~~~ps~h~~~~~~d 664 (733)
|||||+ .||+++..+..+.
T Consensus 244 ~~~kr~-~~~~~~~~~~~~~ 262 (268)
T 1xng_A 244 NAFKLE-LPAIAKRFNPELE 262 (268)
T ss_dssp TGGGGS-CCEECCCC-----
T ss_pred hHhccc-CCCCccccchhhc
Confidence 999999 8999999888774
No 15
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=100.00 E-value=9.9e-43 Score=365.12 Aligned_cols=243 Identities=13% Similarity=0.061 Sum_probs=209.8
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCc
Q 004719 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~ 80 (733)
|+.||||++|+++..+|++.|++++.+++++| ++|||||||||++++||.+.+......+.....+.|+++++. ++
T Consensus 1 M~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~---~~ 76 (266)
T 2e11_A 1 MHDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAAR---LG 76 (266)
T ss_dssp CCCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHH---HT
T ss_pred CCccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHH---hC
Confidence 88899999999999999999999999999999 899999999999999997665444434444556677777764 79
Q ss_pred eeeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccccc
Q 004719 81 ILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (733)
Q Consensus 81 i~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~ 159 (733)
+++++|++++.++++||+++++. +|+++ .|+|+||+++ +.|.+||++|+..
T Consensus 77 ~~iv~G~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~--~~E~~~f~~G~~~------------------------- 128 (266)
T 2e11_A 77 AAITGSVQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRF--GNEHLRYAAGRER------------------------- 128 (266)
T ss_dssp SEEEEEEEEEETTEEEEEEEEECTTSCEE-EEECSSCCGG--GTTTTTSBCCCSC-------------------------
T ss_pred CEEEEeeeEccCCcEEEEEEEECCCCCEE-EEeeeccCCC--cChhhhccCCCCc-------------------------
Confidence 99999999988899999999996 89999 9999999875 4689999999753
Q ss_pred ceeeeehhhHHHHHhhhhcCCCCCccccc---cc---ceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCC
Q 004719 160 GFIQFLDTAVAAEICEELFTPIPPHADLA---LN---GVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQG 233 (733)
Q Consensus 160 ~vf~~~~~riGv~ICeDlw~p~~~~~~la---~~---GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G 233 (733)
.+|+++++|||+.||||+|||+. .+.++ ++ |||+|++||+|+...+ .+|..+++.||.+|++++++||++|
T Consensus 129 ~v~~~~~~~ig~~ICyD~~fpe~-~r~~~~~~~~~~~ga~~i~~~s~w~~~~~--~~~~~~~~~rA~en~~~vv~an~~G 205 (266)
T 2e11_A 129 LCVEWKGWRINPQVCYDLRFPVF-CRNRFDVERPGQLDFDLQLFVANWPSARA--YAWKTLLRARAIENLCFVAAVNRVG 205 (266)
T ss_dssp CCEEETTEEEEEEEGGGGGCTTT-TCCCBSSSSTTSBSCSEEEEEECCCGGGH--HHHHHHHHHHHHHTTSEEEEEECEE
T ss_pred eEEEECCEEEEEEEEeccCCHHH-HHHHHhhhhccCCCCcEEEEeCCCCCCch--HHHHHHHHHHHHhcCcEEEEEcCCc
Confidence 57899999999999999999975 45654 54 9999999999986543 3677889999999999999999999
Q ss_pred CCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004719 234 CDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 234 ~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
.++++..|.|+|+|+ |+|+++++++ ++ +++++++||++.++..|.
T Consensus 206 ~~~~~~~~~G~S~ii~p~G~v~~~~~-~~---e~~l~~~id~~~~~~~R~ 251 (266)
T 2e11_A 206 VDGNQLHYAGDSAVIDFLGQPQVEIR-EQ---EQVVTTTISAAALAEHRA 251 (266)
T ss_dssp ECTTSCEEEEEEEEECTTSCEEEEEE-SS---CEEEEEEECHHHHHHHHH
T ss_pred CCCCCceEeeeEEEECCCCceeeecC-CC---CeEEEEEEcHHHHHHHHH
Confidence 886668899999999 9999999987 53 479999999999987664
No 16
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=100.00 E-value=2.6e-42 Score=364.00 Aligned_cols=248 Identities=15% Similarity=0.083 Sum_probs=211.9
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccc-cchhhhHHHHHHHhccCCCC
Q 004719 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL-DTVTHAWECLKDLLLGDWTD 79 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~-~~~~~~~~~L~~La~~~~~~ 79 (733)
|+.||||++|++.. +|++.|++++.+++++|+++|||||||||++++||.+.+..... .+.....+.|.++++. +
T Consensus 1 M~~~~va~vQ~~~~-~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~---~ 76 (276)
T 2w1v_A 1 MSTFRLALIQLQVS-SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKE---S 76 (276)
T ss_dssp CCEEEEEEEECCCC-SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHH---H
T ss_pred CCccEEEEEecccc-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHH---c
Confidence 88899999999965 99999999999999999999999999999999999887654322 2223455666777664 7
Q ss_pred ceeeecC-cceeeCceeeeeEEEEe-cceEEEEecceee-----ccCCCceeeeccccccccccccccCCchHHHHHhcC
Q 004719 80 GILCSFG-MPVIKGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (733)
Q Consensus 80 ~i~iivG-~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~L-----p~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~ 152 (733)
++.+++| .+++.++++||+++++. +|++++.|+|+|| |.+..|.|.+||++|+..
T Consensus 77 ~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~------------------ 138 (276)
T 2w1v_A 77 SIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSF------------------ 138 (276)
T ss_dssp TSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCC------------------
T ss_pred CeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCc------------------
Confidence 8999999 56666889999999997 8999999999999 655556799999999753
Q ss_pred cccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCC
Q 004719 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (733)
Q Consensus 153 ~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~ 232 (733)
.+|+++++|||+.||||+|||+ ..+.++++|||+|++||+|+...++ .+|..+++.||.+|++++++||++
T Consensus 139 -------~v~~~~~~~ig~~ICyD~~fpe-~~r~~~~~ga~ll~~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~~ 209 (276)
T 2w1v_A 139 -------STFDTPYCKVGLGICYDMRFAE-LAQIYAQRGCQLLVYPGAFNLTTGP-AHWELLQRARAVDNQVYVATASPA 209 (276)
T ss_dssp -------CEEECSSCEEEECCGGGGGCHH-HHHHHHHTTEEEEEEECCCCTTHHH-HHHHHHHHHHHHHHTCEEEEECCC
T ss_pred -------eeEEeCCceEEEEEEeccccHH-HHHHHHHcCCCEEEECCcCCCcCCH-HHHHHHHHHHHHHcCcEEEEeccc
Confidence 4789999999999999999997 4678899999999999999876654 367778999999999999999999
Q ss_pred CCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004719 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 233 G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
|.+.++..|.|+|+|+ |+|+++++++. + +++++++||++.++..|.+
T Consensus 210 G~~~~~~~~~G~S~ii~p~G~v~~~~~~-~---e~~l~~~id~~~~~~~R~~ 257 (276)
T 2w1v_A 210 RDDKASYVAWGHSTVVDPWGQVLTKAGT-E---ETILYSDIDLKKLAEIRQQ 257 (276)
T ss_dssp CCTTSSSCCCCCCEEECTTSCEEEECCS-S---SEEEEEEEEHHHHHHHHHH
T ss_pred ccCCCCceeeeEeEEECCCCCEeEEcCC-C---CeEEEEEEcHHHHHHHHHh
Confidence 9886678899999999 99999999875 2 4799999999999877643
No 17
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.9e-41 Score=350.47 Aligned_cols=248 Identities=25% Similarity=0.347 Sum_probs=206.1
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004719 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+++...+..||++| +.++++|+||||+||+++|+++ .+++ |+.+
T Consensus 7 ~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~-------~~~~--g~~~----------------------- 50 (257)
T 2e18_A 7 DKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLA-------TKAL--GKEK----------------------- 50 (257)
T ss_dssp HHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHH-------HHHH--CGGG-----------------------
T ss_pred HHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHH-------HHhc--CCCc-----------------------
Confidence 56777788999998 7789999999999999999887 4554 2232
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHH
Q 004719 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~ 488 (733)
+++++|++.. + .+.++|+++|+.||++|++++|+++++.+.+.+.. ..++++.+|+|+|+
T Consensus 51 ----v~av~~~~~~-~-~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~--------------~~~~~~~~n~~ar~ 110 (257)
T 2e18_A 51 ----VLGLIMPYFE-N-KDVEDAKLVAEKLGIGYKVINIKPIVDSFVENLEL--------------NLDRKGLGNIMSRT 110 (257)
T ss_dssp ----EEEEECCSSC-S-THHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHCS--------------CCCHHHHHHHHHHH
T ss_pred ----EEEEEeCCCC-c-hHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHhcc--------------ccccchhHHHHHHH
Confidence 5899999874 4 78999999999999999999999887776655432 12568899999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhc
Q 004719 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEA 568 (733)
Q Consensus 489 R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~ 568 (733)
|+.+++.+|+.. |.+|++|||.+|..+||+|+|||+..+++||++++|++|+++++| +|+| .++++
T Consensus 111 r~~~l~~~A~~~--------g~~vl~tg~~~e~~~Gy~t~~g~~~~~i~Pl~~l~K~ev~~la~~----~gip--~~i~~ 176 (257)
T 2e18_A 111 RMIMLYAHANSL--------GRIVLGTSNRSEFLTGYFTKWGDGASDYAPIINLYKTEVWEIAKR----IGVP--ERIVK 176 (257)
T ss_dssp HHHHHHHHHHHH--------TCEEECCCCHHHHHHTCSCTTSTTCSSBCTTTTSCHHHHHHHHHH----HTCC--HHHHH
T ss_pred HHHHHHHHHHHc--------CCEEEEcCchhHHhcCCeeccCCCccCEeecCCCcHHHHHHHHHH----cCCC--HHHhC
Confidence 999999999865 468899999999999999999999999999999999999999765 6777 88999
Q ss_pred CCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeeccce
Q 004719 569 APPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHK 648 (733)
Q Consensus 569 ~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~hK 648 (733)
+||||||+| +|+||++||++|++||.|++.......+|.++... .++++ +.|++|+++|.+||||
T Consensus 177 ~~ps~~l~~-----~q~de~~lg~~y~~ld~~l~~~~~~~~~~~~i~~~------~~~~~----~~~~~~~~~~~~~~~k 241 (257)
T 2e18_A 177 KKPSAGLWE-----GQTDEDELGISYNLLDEILWRMIDLKIGKEEIAKD------LGIPL----SLVERVEELIKKSEHK 241 (257)
T ss_dssp SCCCCCSST-----TCCHHHHHTSCHHHHHHHHHHHHTSCCCHHHHHHT------TTCCH----HHHHHHHHHHHTTGGG
T ss_pred CCCCCCcCC-----CCcCHhhcCCCHHHHHHHHHHHHhcCCCHHHHHHH------hCCCH----HHHHHHHHHHHHhHhh
Confidence 999999999 89999999999999999987544334455555432 02443 3589999999999999
Q ss_pred eeecCccccccCCC
Q 004719 649 MTVLTPSYHAESYS 662 (733)
Q Consensus 649 ~~~~~ps~h~~~~~ 662 (733)
|+ .||++|..+.|
T Consensus 242 r~-~~~~~~~~~~~ 254 (257)
T 2e18_A 242 RR-LPIGPSFEDLI 254 (257)
T ss_dssp SS-CCCCCCCGGGE
T ss_pred cc-CCCCCCCCCCC
Confidence 99 79999886554
No 18
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=100.00 E-value=4e-41 Score=357.44 Aligned_cols=246 Identities=19% Similarity=0.158 Sum_probs=205.3
Q ss_pred eeceecccccccccccccchhhHHHHHHHH--HHcCceeeeCcceeecccccccccccccch-----hhhHHHHHHHhcc
Q 004719 3 LLKVATCNLNNWALDFDCNLKNIKESIGRA--KEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLG 75 (733)
Q Consensus 3 ~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A--~~~gadLvVfPEl~ltGY~~~D~~~~~~~~-----~~~~~~L~~La~~ 75 (733)
.||||++|+++..+|++.|++++.+++++| +++|||||||||++++||.+.+.....+.. ....+.|+++++.
T Consensus 10 ~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 89 (291)
T 1f89_A 10 KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANK 89 (291)
T ss_dssp CEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHH
T ss_pred cceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHHH
Confidence 589999999955699999999999999999 889999999999999999876654332322 3455667777764
Q ss_pred CCCCceeeecCc-ceeeC--ceeeeeEEEEe-cceEEEEecceee-----ccCCCceeeeccccccccccccccCCchHH
Q 004719 76 DWTDGILCSFGM-PVIKG--SERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (733)
Q Consensus 76 ~~~~~i~iivG~-p~~~~--g~lYN~a~vi~-~G~Il~~~~K~~L-----p~~g~f~E~r~F~~g~~~~~~e~~~lp~~i 146 (733)
+++.+++|. +++.+ +++||+++++. +|++++.|+|+|| |++..|.|.+||++|+..
T Consensus 90 ---~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~~------------ 154 (291)
T 1f89_A 90 ---FKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKS------------ 154 (291)
T ss_dssp ---SSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCC------------
T ss_pred ---cCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCCC------------
Confidence 799999995 66665 78999999997 8999999999999 444456799999999753
Q ss_pred HHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEE
Q 004719 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (733)
Q Consensus 147 ~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~ 226 (733)
.+|+++++|||+.||||+|||+ ..+.++++|||+|++|++|+...++ .+|..+++.||.+|++++
T Consensus 155 -------------~v~~~~~~~ig~~ICyD~~fpe-~~r~l~~~Ga~ll~~ps~~~~~~~~-~~~~~~~~~rA~en~~~v 219 (291)
T 1f89_A 155 -------------TTIDTKYGKFGVGICYDMRFPE-LAMLSARKGAFAMIYPSAFNTVTGP-LHWHLLARSRAVDNQVYV 219 (291)
T ss_dssp -------------EEEEETTEEEEECCGGGGGCHH-HHHHHHHTTEEEEEEECCCBTTHHH-HHHHHHHHHHHHHHTSEE
T ss_pred -------------ceEecCCeeEEEEEecccCchH-HHHHHHhhCCCEEEECCcCCCCCcH-HHHHHHHHHHHHHcCCEE
Confidence 4789999999999999999996 4778899999999999999876654 366778999999999999
Q ss_pred EeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004719 227 MYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 227 vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
++||++|...+...|+|.|+|+ |+|+++++++. . +++++++||++.++..|.
T Consensus 220 v~~n~~G~~~~~~~~~G~S~ii~p~G~vl~~~~~-~---e~~l~~~id~~~~~~~R~ 272 (291)
T 1f89_A 220 MLCSPARNLQSSYHAYGHSIVVDPRGKIVAEAGE-G---EEIIYAELDPEVIESFRQ 272 (291)
T ss_dssp EEECCCCCTTSSSCBCCCCEEECTTSCEEEECCS-S---SEEEEEEECHHHHHHHHH
T ss_pred EEecCccCCCCCCeeeeEEEEECCCCCEEEecCC-C---CeEEEEEECHHHHHHHHH
Confidence 9999999655678899999999 99999999874 2 479999999999987663
No 19
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=100.00 E-value=2e-41 Score=361.58 Aligned_cols=249 Identities=19% Similarity=0.215 Sum_probs=204.1
Q ss_pred ceeceecccccccc--cccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccccc----ccc-----hhhhHHHHH
Q 004719 2 RLLKVATCNLNNWA--LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----LDT-----VTHAWECLK 70 (733)
Q Consensus 2 ~~~kVA~~Qln~~~--~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~----~~~-----~~~~~~~L~ 70 (733)
+.||||++|+++.. +|++.|++++.+++++|+++|||||||||++++||.+.+++.. ..+ .....+.|+
T Consensus 2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (303)
T 1uf5_A 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF 81 (303)
T ss_dssp CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHH
Confidence 46999999999887 8999999999999999999999999999999999987764332 111 122344566
Q ss_pred HHhccCCCCceeeecCcceee-Cc---eeeeeEEEEe-cceEEEEecceeeccCCC------c--eeeecccccc-cccc
Q 004719 71 DLLLGDWTDGILCSFGMPVIK-GS---ERYNCQVLCL-NRKIIMIRPKLWLANDGN------Y--RELRWFTAWK-QKDQ 136 (733)
Q Consensus 71 ~La~~~~~~~i~iivG~p~~~-~g---~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~------f--~E~r~F~~g~-~~~~ 136 (733)
++++ ++++.+++|++++. ++ ++||+++++. +|++++.|+|+|||++++ | .|.+||++|+ ..
T Consensus 82 ~~a~---~~~~~iv~G~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~~~~~~E~~~f~~G~~~~-- 156 (303)
T 1uf5_A 82 EKAA---ELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGF-- 156 (303)
T ss_dssp HHHH---HHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCS--
T ss_pred HHHH---HhCeEEEEeeeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccccccccchhhccCCCCCC--
Confidence 6665 47999999999875 45 7999999998 699999999999985554 3 6999999987 32
Q ss_pred ccccCCchHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEE---ecCCCchhhhh-----hh
Q 004719 137 LEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVF---MNASGSHHQLR-----KL 208 (733)
Q Consensus 137 ~e~~~lp~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiI---lnpSas~~~~g-----k~ 208 (733)
.+|+++++|||+.||||+|||+ ..+.++++|||+| +|+++++...+ ..
T Consensus 157 -----------------------~v~~~~~~~ig~~ICyD~~fpe-~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~ 212 (303)
T 1uf5_A 157 -----------------------PVYDVDAAKMGMFIANDRRWPE-AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTS 212 (303)
T ss_dssp -----------------------CEEEETTEEEEECCGGGGGCHH-HHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHH
T ss_pred -----------------------ceEecCCceEEEEEecCccCHH-HHHHHHHCCCCEEEEecCCccccccccCCccccH
Confidence 5789999999999999999997 4678899999999 45566544432 23
Q ss_pred hHHHHHHhhhccccceEEEeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004719 209 DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 209 ~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
.+|..+.+.||.+|++++++||++|.+ +...|.|+|+|+ |+|+++++.+.++ +++++++||++.++..|.+
T Consensus 213 ~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vl~~~~~~~---~~~l~~~id~~~~~~~R~~ 284 (303)
T 1uf5_A 213 FHHLLSMQAGSYQNGAWSAAAGKAGME-ENCMLLGHSCIVAPTGEIVALTTTLE---DEVITAAVDLDRCRELREH 284 (303)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEBCEEE-TTEEECCCCEEECTTSCEEEECCSSS---SEEEEEEEEGGGGHHHHTT
T ss_pred HHHHHHHHhhhhcCCcEEEEECccccc-CCccccceeEEECCCCCEeccCCCCC---CcEEEEEEcHHHHHHHHhh
Confidence 445567899999999999999999987 456799999999 9999999988764 3799999999999877754
No 20
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=100.00 E-value=6.4e-40 Score=363.78 Aligned_cols=250 Identities=17% Similarity=0.145 Sum_probs=194.6
Q ss_pred ceeceeccccccc-------ccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccc--ccccccch-----hhhHH
Q 004719 2 RLLKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED--HFLELDTV-----THAWE 67 (733)
Q Consensus 2 ~~~kVA~~Qln~~-------~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D--~~~~~~~~-----~~~~~ 67 (733)
+.||||++|+++. .+|++.|++++.++|++|+++|||||||||++++||...+ ......+. ....+
T Consensus 71 ~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~ 150 (405)
T 2vhh_A 71 RIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTK 150 (405)
T ss_dssp CEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHH
T ss_pred CCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHH
Confidence 4699999999853 4789999999999999999999999999999999996421 10001111 23345
Q ss_pred HHHHHhccCCCCceeeecCcceee---CceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCc
Q 004719 68 CLKDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (733)
Q Consensus 68 ~L~~La~~~~~~~i~iivG~p~~~---~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp 143 (733)
.|+++++ +++++|++|++++. ++++||++++|. +|++++.|+|+|||++|.|.|.+||++|+..
T Consensus 151 ~l~~lA~---~~~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~~G~~~--------- 218 (405)
T 2vhh_A 151 MLAELAK---AYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTG--------- 218 (405)
T ss_dssp HHHHHHH---HTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCCSC---------
T ss_pred HHHHHHH---HCCEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCcccceeCCCCC---------
Confidence 5666665 47999999999876 578999999998 8999999999999999999999999999742
Q ss_pred hHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccc
Q 004719 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (733)
Q Consensus 144 ~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g 223 (733)
..+|+++++|||+.||||+|||+. .+.++++|||||++||+|+...++ .+|..+++.||.+|+
T Consensus 219 ---------------~~vf~~~~~riG~~ICyD~~fPe~-~r~la~~GAdill~psa~~~~~~~-~~w~~l~raRAiEn~ 281 (405)
T 2vhh_A 219 ---------------HPVFETEFGKLAVNICYGRHHPQN-WMMFGLNGAEIVFNPSATIGRLSE-PLWSIEARNAAIANS 281 (405)
T ss_dssp ---------------CCEEEETTEEEEECCGGGGGCHHH-HHHHHHTTCSEEEEEECCBCTTTH-HHHHHHHHHHHHHHT
T ss_pred ---------------CeeEEECCEEEEEEEeccccChHH-HHHHHHcCCCEEEEcccCCCCCCH-HHHHHHHHHHHHHcC
Confidence 157999999999999999999974 567889999999999998754443 466678999999999
Q ss_pred eEEEeecCCCCCC---------------ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004719 224 GVYMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 224 ~~~vyaN~~G~~~---------------~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
+++++||++|.+. +...|.|.|+|+ |+|+++++++.++ +++++++||++.++..|.+
T Consensus 282 ~~Vv~aN~vG~~~~~~~~~~~~g~~~~~~~~~f~G~S~IidP~G~vla~~~~~~---e~il~aeiDl~~~~~~R~~ 354 (405)
T 2vhh_A 282 YFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDK---DGLLVVELDLNLCRQVKDF 354 (405)
T ss_dssp SEEEEEECEECCCCC-----------------EECCCCCBCTTSCBCCCCCSSS---CEEEEEEEETTHHHHHHHH
T ss_pred ceEEEeccccccccccccccccCccccccCceeccccceECCCCCEeeccCCCC---CeEEEEEECHHHHHHHHHh
Confidence 9999999998752 235689999999 9999999988764 3799999999999877743
No 21
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=100.00 E-value=9.7e-39 Score=358.49 Aligned_cols=248 Identities=17% Similarity=0.092 Sum_probs=205.6
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccc--cccchhhhHHHHHHHhccCCC
Q 004719 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL--ELDTVTHAWECLKDLLLGDWT 78 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~--~~~~~~~~~~~L~~La~~~~~ 78 (733)
|+.||||++|+++. .|++.|++++.+++++|+++|||||||||++++||.+.+... .........+.|+++++ +
T Consensus 12 ~~~~kVa~vQ~~~~-~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~---~ 87 (440)
T 1ems_A 12 TGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELAR---K 87 (440)
T ss_dssp CSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred cCCceEEEEecCCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcchhHHHHhhccCCCHHHHHHHHHHH---H
Confidence 35699999999986 899999999999999999999999999999999987643211 11112233445566665 4
Q ss_pred CceeeecCcce---e-eCceeeeeEEEEe-cceEEEEecceee-----ccCCCceeeeccccccccccccccCCchHHHH
Q 004719 79 DGILCSFGMPV---I-KGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEISV 148 (733)
Q Consensus 79 ~~i~iivG~p~---~-~~g~lYN~a~vi~-~G~Il~~~~K~~L-----p~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~ 148 (733)
+++++++|++. + .++++||++++++ +|++++.|+|+|| |++..|.|.+||++|+..
T Consensus 88 ~~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~~-------------- 153 (440)
T 1ems_A 88 HNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEM-------------- 153 (440)
T ss_dssp TTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSC--------------
T ss_pred cCeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCCC--------------
Confidence 89999999664 3 3578999999997 8999999999999 445457899999999754
Q ss_pred HhcCcccccccce-eeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEE
Q 004719 149 ALKQKSVPFGYGF-IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (733)
Q Consensus 149 ~~~~~~vpfG~~v-f~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~v 227 (733)
.+ |+++++|||+.||||+|||+ ..+.++++|||||++||+|+...++. +|..+++.||.+|+++++
T Consensus 154 -----------~~~~~~~~~~iG~~ICyD~~fpe-~~r~l~~~Ga~il~~psa~~~~~~~~-~~~~~~~arA~En~~~vv 220 (440)
T 1ems_A 154 -----------IPPVDTPIGRLGLSICYDVRFPE-LSLWNRKRGAQLLSFPSAFTLNTGLA-HWETLLRARAIENQCYVV 220 (440)
T ss_dssp -----------CCCEEETTEEECCCCGGGGGCHH-HHHHHHHTTCSEEECCBCCCHHHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred -----------ceeEECCCeeEEEEEeccccChH-HHHHHHHcCCcEEEECCcCCCCCcHH-HHHHHHHHHHHhcCcEEE
Confidence 34 88999999999999999997 57788999999999999998776654 677789999999999999
Q ss_pred eecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004719 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 228 yaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
+||++|.+++...|.|+|+|+ |+|+++++.+. ++++++++||++.++..|..
T Consensus 221 ~an~~G~~~~~~~~~G~S~ii~P~G~vla~~~~----~e~il~a~idl~~~~~~R~~ 273 (440)
T 1ems_A 221 AAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCSE----RVDMCFAEIDLSYVDTLREM 273 (440)
T ss_dssp ECBBEEEEETTEEEECCCEEECTTSCEEEECCS----SSCEEEEEEEHHHHHHHHHH
T ss_pred EecccccCCCCceeeeeeEEECCCCCeeccCCC----CCcEEEEEeCHHHHHHHHHh
Confidence 999999775557899999999 99999999863 24799999999999877643
No 22
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=100.00 E-value=7.8e-39 Score=346.79 Aligned_cols=242 Identities=20% Similarity=0.205 Sum_probs=198.1
Q ss_pred eeceecccccc----cccccccchhhHHHHHHHHHH--cCceeeeCcceeeccccccccccc--c-cchhhhHHHHHHHh
Q 004719 3 LLKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCEDHFLE--L-DTVTHAWECLKDLL 73 (733)
Q Consensus 3 ~~kVA~~Qln~----~~~D~e~N~~ri~~~I~~A~~--~gadLvVfPEl~ltGY~~~D~~~~--~-~~~~~~~~~L~~La 73 (733)
.||||++|+|. ..+|++.|++++.++|++|++ +|||||||||++++||.+.+.... . .......+.|++++
T Consensus 13 ~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a 92 (334)
T 2dyu_A 13 GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKAC 92 (334)
T ss_dssp CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHHH
T ss_pred ccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCChhHHHHhhccCCCHHHHHHHHHH
Confidence 58999999983 468999999999999999987 799999999999999865432111 0 11122344455555
Q ss_pred ccCCCCceeeecCcceeeC-ce--eeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHH
Q 004719 74 LGDWTDGILCSFGMPVIKG-SE--RYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVA 149 (733)
Q Consensus 74 ~~~~~~~i~iivG~p~~~~-g~--lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~ 149 (733)
+ ++++.+++|++++.+ +. +||++++|. +|++++.|+|+||+ .|.++|++|+..
T Consensus 93 ~---~~~i~iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf-----~e~~~f~~G~~~--------------- 149 (334)
T 2dyu_A 93 K---EAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPW-----NPIEPWYPGDLG--------------- 149 (334)
T ss_dssp H---HHTCEEEEEEEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCCCCCSC---------------
T ss_pred H---HhCeEEEEeeEEECCCCCceeEEEEEEECCCCCEEEEEeeccCC-----CCcccCcCCCCC---------------
Confidence 4 578999999998753 44 999999998 89999999999974 356789888743
Q ss_pred hcCcccccccceeee-ehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEe
Q 004719 150 LKQKSVPFGYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMY 228 (733)
Q Consensus 150 ~~~~~vpfG~~vf~~-~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vy 228 (733)
..+|++ .|.|||+.||+|+|||+ ..+.++++|||||++||+|+... ..+|..+++.||.+|++++++
T Consensus 150 ---------~~v~~~~~g~~iG~~ICyD~~fpe-~~r~~~~~Gadlil~psaw~~~~--~~~~~~~~~arA~En~~~vv~ 217 (334)
T 2dyu_A 150 ---------MPVCEGPGGSKLAVCICHDGMIPE-LAREAAYKGCNVYIRISGYSTQV--NDQWILTNRSNAWHNLMYTVS 217 (334)
T ss_dssp ---------CCCEECGGGCEEEEEEGGGGGCHH-HHHHHHHTTCSEEEEEESSCTTS--HHHHHHHHHHHHHHHTCEEEE
T ss_pred ---------ceeEECCCCCEEEEEEECCCCchH-HHHHHHHcCCCEEEEeCCCCCCc--HHHHHHHHHHHHHhCCCEEEE
Confidence 036887 56799999999999996 57788999999999999987543 347788899999999999999
Q ss_pred ecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004719 229 SNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 229 aN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
||++|.+ +...|.|+|+|+ |+|+++++++.+++ ++++++||++.++..|.+
T Consensus 218 an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~e---~il~a~idl~~~~~~R~~ 269 (334)
T 2dyu_A 218 VNLAGYD-NVFYYFGEGQICNFDGTTLVQGHRNPW---EIVTGEIYPKMADNARLS 269 (334)
T ss_dssp EECSBSS-SSCCCCCEEEEECTTSCEEEECCCCTT---CEEEEEECHHHHHHHHHH
T ss_pred ECCCcCC-CCeeeeeEEEEECCCCCEeeecCCCCC---eEEEEEEcHHHHHHHHhh
Confidence 9999988 667899999999 99999999987643 789999999999887754
No 23
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=100.00 E-value=1.1e-38 Score=346.61 Aligned_cols=240 Identities=18% Similarity=0.156 Sum_probs=196.7
Q ss_pred ceeceecccccc----cccccccchhhHHHHHHHHHH--cCceeeeCcceeecccccc--ccccccc-chhhhHHHHHHH
Q 004719 2 RLLKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCE--DHFLELD-TVTHAWECLKDL 72 (733)
Q Consensus 2 ~~~kVA~~Qln~----~~~D~e~N~~ri~~~I~~A~~--~gadLvVfPEl~ltGY~~~--D~~~~~~-~~~~~~~~L~~L 72 (733)
..||||++|+|. ..+|++.|++++.+++++|++ +|||||||||++++||... +++.... ......+.|+++
T Consensus 11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~ 90 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEIFSRA 90 (341)
T ss_dssp TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHHHHHHH
T ss_pred CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCHHHHHHHhccCCCHHHHHHHHH
Confidence 369999999993 468999999999999999988 7999999999999997542 2221111 112334445555
Q ss_pred hccCCCCceeeecCcc-eeeC----ceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHH
Q 004719 73 LLGDWTDGILCSFGMP-VIKG----SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (733)
Q Consensus 73 a~~~~~~~i~iivG~p-~~~~----g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i 146 (733)
++ ++++++++|++ ++.+ +++||++++|. +|++++.|+|+||+ .|.++|+||+..
T Consensus 91 a~---~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf-----~e~~~f~pG~~~------------ 150 (341)
T 2uxy_A 91 CR---KANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPW-----CPIEGWYPGGQT------------ 150 (341)
T ss_dssp HH---HHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCBCCCCC------------
T ss_pred HH---HhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccC-----CCccceeCCCCc------------
Confidence 54 57899999998 7653 34999999998 99999999999974 366789998753
Q ss_pred HHHhcCcccccccceeee-ehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceE
Q 004719 147 SVALKQKSVPFGYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (733)
Q Consensus 147 ~~~~~~~~vpfG~~vf~~-~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~ 225 (733)
.+|++ .|.|||+.||||+|||+ +.+.++++|||||++||+|++ .+..+|..+++.||.+|+++
T Consensus 151 -------------~v~~~~~G~riG~~ICyD~~fpe-~~r~l~~~Gadlll~psa~~~--~~~~~~~~l~~arA~En~~~ 214 (341)
T 2uxy_A 151 -------------YVSEGPKGMKISLIIXDDGNYPE-IWRDCAMKGAELIVRCQGYMY--PAKDQQVMMAKAMAWANNCY 214 (341)
T ss_dssp -------------CCEECGGGCEEEEEEGGGGGSHH-HHHHHHHTTCSEEEEEECCBT--TCHHHHHHHHHHHHHHHTCE
T ss_pred -------------eEEECCCCCEEEEEEccCCcCcH-HHHHHHHcCCCEEEEcCCCCC--CcHHHHHHHHHHHHHhCCcE
Confidence 46888 56799999999999996 577889999999999999876 34567888999999999999
Q ss_pred EEeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccc
Q 004719 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281 (733)
Q Consensus 226 ~vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R 281 (733)
+++||++|.+ +...|+|.|+|+ |+|+++++++.+++ ++++++||++.++..|
T Consensus 215 vv~an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~e---~il~a~id~~~~~~~R 267 (341)
T 2uxy_A 215 VAVANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEEM---GIQYAQLSLSQIRDAR 267 (341)
T ss_dssp EEEEECEEEC-SSCEEECCCEEECTTSCEEEECCSCTT---CEEEEEEEHHHHHHHH
T ss_pred EEEECCCCCC-CCceeeeEEEEECCCCCEEEECCCCCC---EEEEEEEcHHHHHHHH
Confidence 9999999988 667899999999 99999999987743 6899999999876544
No 24
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.81 E-value=9.6e-21 Score=221.77 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=153.4
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004719 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+++......+|++|+. .++++|+||||+||+++|+|+ .+++ |+.+
T Consensus 224 ~~~~~~~i~~Ir~~v~---~~~vvv~lSGGvDSsVla~Ll-------~~al--G~~~----------------------- 268 (697)
T 2vxo_A 224 QNRELECIREIKERVG---TSKVLVLLSGGVDSTVCTALL-------NRAL--NQEQ----------------------- 268 (697)
T ss_dssp HHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHHS--CGGG-----------------------
T ss_pred hHHHHHHHHHHHHHhc---ccceEEEccCchHHHHHHHHH-------HHhc--CCce-----------------------
Confidence 4566667888999985 378999999999999999997 5665 3333
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHH
Q 004719 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~ 488 (733)
+++++|+...++..+.++|+++|+.+|++|+++++++.+......+... +....|...-..+.+.++.+|++.|.
T Consensus 269 ----V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~vvdi~~~f~~~~~~l~~~-~~~~~Y~~g~~~~l~~v~~~~~kR~i 343 (697)
T 2vxo_A 269 ----VIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYNGTTTLPIS-DEDRTPRKRISKTLNMTTSPEEKRKI 343 (697)
T ss_dssp ----EEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECHHHHHTCCCBCC-----------CBCCCGGGCCCHHHHHHH
T ss_pred ----EEEEEeccccCCcchHHHHHHHHHHhCCcEEEecchHHHHhhhhhhccc-ccccchhcccCcCcccccCHHHHHhH
Confidence 5899999877766778999999999999999999997554311000000 00000100000124556677888777
Q ss_pred HHHHHHHH----HhhcccccCCCcEEEEeccCccccc---------------------cccccccccCCCCCCCCCCCCc
Q 004719 489 RMVLAFML----ASLLPWVHNKPGFYLVLGSSNVDEG---------------------LRGYLTKYDCSSADINPIGSIS 543 (733)
Q Consensus 489 R~~~~~~~----A~~~~~~~~~~g~~lVlgT~N~sE~---------------------~~Gy~T~~gd~~~~i~Pi~~l~ 543 (733)
|+.+.+.+ |+.+ +-....++|+|||..+- ..|+.+++++...++.||.+++
T Consensus 344 ig~~~~~v~~~~A~~~----g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~~~~~~~~~~i~PL~~L~ 419 (697)
T 2vxo_A 344 IGDTFVKIANEVIGEM----NLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFH 419 (697)
T ss_dssp HHHHHHHHHHHHHHHT----CCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGGGGSC
T ss_pred HHHHHHHHHHHHHHHc----CCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhhHHhccCCEEEEecccCC
Confidence 65555444 4433 10001246777775531 1244466677778999999999
Q ss_pred HHhHHHHHHHHHhhcCCccchhhhcCCCCcc--cccccccccccccccccCChhhhhhhccc
Q 004719 544 KQDLRTFLRWAATHLGYSSLAEIEAAPPTAE--LEPIRSNYSQLDEVDMGMTYEELSVYGRL 603 (733)
Q Consensus 544 K~~vr~l~~~~~~~~g~p~l~~i~~~~psae--L~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l 603 (733)
|+||++++ +++|+| ..++.++|+|+ |++- ..|+||+++|++|++||.+++.
T Consensus 420 K~EVr~la----~~lGlP--~~i~~r~Ps~gpgL~~r---~~~~de~~~g~~Y~~ld~iL~~ 472 (697)
T 2vxo_A 420 KDEVRILG----RELGLP--EELVSRHPFPGPGLAIR---VICAEEPYICKDFPETNNILKI 472 (697)
T ss_dssp HHHHHHHH----HHTTCC--HHHHTCCCCCTTGGGGG---BCCBSSCCCCTTHHHHHHHHHH
T ss_pred HHHHHHHH----HHcCCC--cceeeCCCCCCCccccC---ccccchhhhcCCHHHHHHHHHH
Confidence 99999995 448877 88999999987 8872 2499999999999999999874
No 25
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.59 E-value=5.5e-16 Score=177.13 Aligned_cols=202 Identities=18% Similarity=0.157 Sum_probs=128.7
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004719 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+++......+|++++.. ++++|+||||+||+++|+++ .+++| .+
T Consensus 211 ~~~~~~~~~~ir~~v~~---~~vvvalSGGvDSsv~a~ll-------~~a~G--~~------------------------ 254 (525)
T 1gpm_A 211 AKIIDDAVARIREQVGD---DKVILGLSGGVDSSVTAMLL-------HRAIG--KN------------------------ 254 (525)
T ss_dssp HHHHHHHHHHHHHHHTT---CEEEEECCSSHHHHHHHHHH-------HHHHG--GG------------------------
T ss_pred HHHHHhhhhhhhhhhcc---cceEEEecCCCCHHHHHHHH-------HHHhC--CC------------------------
Confidence 34445566778888754 68999999999999999887 45553 22
Q ss_pred HhhhheeeeccCcCChHHHHHHHHH-HHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHH
Q 004719 409 AKRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~-lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR 487 (733)
++++++++...+..+.+.|++ +|+.+|++|+++++++.+ .+.+.... .| +. ..-+-.|
T Consensus 255 ----v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f---~~~l~~~~--~p----------e~--~~~~~~~ 313 (525)
T 1gpm_A 255 ----LTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRF---LSALAGEN--DP----------EA--KRKIIGR 313 (525)
T ss_dssp ----EEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHH---HHHHTTCC--CH----------HH--HHHHHHH
T ss_pred ----EEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHH---HHhhcCCC--Ch----------HH--hhhhhhH
Confidence 578999877666667778866 899999999999998643 22332210 11 11 1112222
Q ss_pred HHHHHHHHHHhhcccccCCCcEEEEecc--Cc---------------cccccccccccccCCCCCCCCCCCCcHHhHHHH
Q 004719 488 IRMVLAFMLASLLPWVHNKPGFYLVLGS--SN---------------VDEGLRGYLTKYDCSSADINPIGSISKQDLRTF 550 (733)
Q Consensus 488 ~R~~~~~~~A~~~~~~~~~~g~~lVlgT--~N---------------~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l 550 (733)
.|.-+++.+|+.+ + .-..|+.|| .+ +|+..+|+.++..+ ...+.||.+++|+||+++
T Consensus 314 ~~~~~l~~~A~~~----~-g~~~l~~Gt~~~D~~E~~~~~~~~s~~iks~~~l~gl~~~~~-~~~i~PL~~l~K~EVr~l 387 (525)
T 1gpm_A 314 VFVEVFDEEALKL----E-DVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMK-MGLVEPLKELFKDEVRKI 387 (525)
T ss_dssp HHHHHHHHHHHHS----S-SEEEEECCCCHHHHHHTTC----------------------C-CEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhc----C-CCCEEEeCCCCcchhhhcCccccccccccccccccccccccC-CcEEehhhcCCHHHHHHH
Confidence 3334456666532 0 125688888 22 23333455555443 368999999999999999
Q ss_pred HHHHHhhcCCccchhhhcCCCC--cccccccccccccccccccCChhhhhhhcc
Q 004719 551 LRWAATHLGYSSLAEIEAAPPT--AELEPIRSNYSQLDEVDMGMTYEELSVYGR 602 (733)
Q Consensus 551 ~~~~~~~~g~p~l~~i~~~~ps--aeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~ 602 (733)
+ +++|+| ..++.++|+ +||..- . .+|.|++.++ .|++.|.+++
T Consensus 388 a----~~lglp--~~i~~~~P~~~p~La~r-i-~g~~t~~~l~-~~~~~d~~l~ 432 (525)
T 1gpm_A 388 G----LELGLP--YDMLYRHPFPGPGLGVR-V-LGEVKKEYCD-LLRRADAIFI 432 (525)
T ss_dssp H----HHTTCC--HHHHTSCCCCTTGGGGT-B-CSSCCHHHHH-HHHHHHHHHH
T ss_pred H----HHcCCC--HHhcccCCCCchhhccc-c-cCCcCHHHHH-HHHHHHHHHH
Confidence 4 558887 777777765 668421 0 2899999997 8998888764
No 26
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.43 E-value=9.8e-14 Score=152.02 Aligned_cols=170 Identities=19% Similarity=0.239 Sum_probs=110.4
Q ss_pred HhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCc
Q 004719 342 YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE 421 (733)
Q Consensus 342 yl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~ 421 (733)
+|++....+++|++|||+||+++|.++ .+. |.+ +++++|...
T Consensus 3 ~~~~~~~~kVlVa~SGGvDSsv~a~lL-------~~~---G~~----------------------------V~~v~~~~~ 44 (376)
T 2hma_A 3 AMSDNSKTRVVVGMSGGVDSSVTALLL-------KEQ---GYD----------------------------VIGIFMKNW 44 (376)
T ss_dssp --CCGGGSEEEEECCSSHHHHHHHHHH-------HHT---TCE----------------------------EEEEEEECC
T ss_pred hhhhCCCCeEEEEEeCHHHHHHHHHHH-------HHc---CCc----------------------------EEEEEEECC
Confidence 466666679999999999999998886 222 443 468888643
Q ss_pred C--------ChHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHH-h-hhCCCCceeecCCccccccchhhHHHHHHH
Q 004719 422 N--------SSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQ-T-LTGKRPCYKVDGGSNVENLGLQNIQARIRM 490 (733)
Q Consensus 422 ~--------ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~~-~-~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~ 490 (733)
. ++.++.++|+++|+.||++|+++++++.+.. +.+.+. . ..|.+| +++..+|-..|.+.
T Consensus 45 ~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tp----------npc~~C~r~ik~~~ 114 (376)
T 2hma_A 45 DDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTP----------NPDVMCNKEIKFKA 114 (376)
T ss_dssp CCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCC----------CHHHHHHHHTTTTH
T ss_pred CcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCC----------ChHHHHHHHHHHHH
Confidence 1 3678899999999999999999999875532 222221 1 124444 45566675444433
Q ss_pred HHHHHHHhhcccccCCCcEEEEeccCccccc----------ccccc-----------ccccCCCCCCCCCCCCcHHhHHH
Q 004719 491 VLAFMLASLLPWVHNKPGFYLVLGSSNVDEG----------LRGYL-----------TKYDCSSADINPIGSISKQDLRT 549 (733)
Q Consensus 491 ~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~----------~~Gy~-----------T~~gd~~~~i~Pi~~l~K~~vr~ 549 (733)
++.+|..+ |.-++.||+.... ..|.- +..+.....+.||++++|.+|++
T Consensus 115 --l~~~A~~~--------G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr~ 184 (376)
T 2hma_A 115 --FLDYAITL--------GADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRR 184 (376)
T ss_dssp --HHHHHHTT--------TCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTCCHHHHTTEECTTTTCCHHHHHH
T ss_pred --HHHHHHhC--------CCCEEEECcchhhhhCCCchhhhhhccccccccchhccCCChhhcCcEEecCcCCCHHHHHH
Confidence 44455433 2344666664321 11211 00111246799999999999999
Q ss_pred HHHHHHhhcCCccchhhhcCCCCccccc
Q 004719 550 FLRWAATHLGYSSLAEIEAAPPTAELEP 577 (733)
Q Consensus 550 l~~~~~~~~g~p~l~~i~~~~psaeL~p 577 (733)
+ ++++|+| +.++|+|++++-
T Consensus 185 ~----A~~~gl~----~~~k~~s~~~cf 204 (376)
T 2hma_A 185 L----AEEAGLS----TAKKKDSTGICF 204 (376)
T ss_dssp H----HHHTTCT----TTTCCCCCSCTT
T ss_pred H----HHHcCCC----cccCCCCCCccc
Confidence 9 5668998 788999998864
No 27
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.41 E-value=2e-13 Score=155.25 Aligned_cols=199 Identities=19% Similarity=0.163 Sum_probs=129.0
Q ss_pred hhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHh
Q 004719 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (733)
Q Consensus 331 i~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~ 410 (733)
+......+|++++. .++++|++|||+||+++|+|+ .++ |.+
T Consensus 195 ~~~~~i~~ir~~~~---~~kvvvalSGGvDSsvla~ll-------~~~---g~~-------------------------- 235 (503)
T 2ywb_A 195 VLEELLREVRERAG---KDRVLLAVSGGVDSSTLALLL-------AKA---GVD-------------------------- 235 (503)
T ss_dssp HHHHHHHHHHHHHT---TSEEEEEECSSHHHHHHHHHH-------HHH---TCE--------------------------
T ss_pred hhHHHHHhhhhhcc---CccEEEEecCCcchHHHHHHH-------HHc---CCe--------------------------
Confidence 33445667777774 378999999999999999887 343 333
Q ss_pred hhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHH
Q 004719 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRM 490 (733)
Q Consensus 411 ~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~ 490 (733)
++++++++...+..+.+.++++|+.+|++|+++++++.+ .+.+. |.. +++ ....+..+.|.
T Consensus 236 --v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~~~~~f---~~~l~---g~~---------~pe--~~r~~~~~~~~ 296 (503)
T 2ywb_A 236 --HLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERF---LKALK---GVE---------DPE--EKRKIIGREFV 296 (503)
T ss_dssp --EEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHH---HHHHT---TCC---------CHH--HHHHHHHHHHH
T ss_pred --EEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEECcHHH---HHhhc---CCC---------ChH--HHhhhhhHHHH
Confidence 578999877666778899999999999999999998643 22222 110 111 11223334444
Q ss_pred HHHHHHHhhcccccCCCcEEEEeccC--ccccccc-c------------ccccccCCCCCCCCCCCCcHHhHHHHHHHHH
Q 004719 491 VLAFMLASLLPWVHNKPGFYLVLGSS--NVDEGLR-G------------YLTKYDCSSADINPIGSISKQDLRTFLRWAA 555 (733)
Q Consensus 491 ~~~~~~A~~~~~~~~~~g~~lVlgT~--N~sE~~~-G------------y~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~ 555 (733)
-+++.+|+.+ + .-..++.||. |..|... | +.+... ....+.||.+++|+||++++
T Consensus 297 ~~l~~~A~~~----~-g~~~la~G~~~~D~~Et~~~g~~~~iks~~~l~~l~~~~-~~~ii~PL~~l~K~EVr~~a---- 366 (503)
T 2ywb_A 297 AAFSQVARER----G-PFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPEDL-EFELLEPFRLLFKDEVRELA---- 366 (503)
T ss_dssp HHHHHHHHHH----C-CCSEEECCCCHHHHHC-----------------CCCSSC-CCEEECTTTTCCHHHHHHHH----
T ss_pred HHHHHHHHhc----C-CCCEEEECCcCccchhhccCCcccccccccccccccccc-cCceEehhhcCCHHHHHHHH----
Confidence 4555556432 0 1145888885 5555422 2 222221 24689999999999999994
Q ss_pred hhcCCccchhhhcCC--CCcccccccccccccccccccCChhhhhhhcc
Q 004719 556 THLGYSSLAEIEAAP--PTAELEPIRSNYSQLDEVDMGMTYEELSVYGR 602 (733)
Q Consensus 556 ~~~g~p~l~~i~~~~--psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~ 602 (733)
+++|+| ..++.+. |++||.. +. .+|.|++.++ .|++.|.+++
T Consensus 367 ~~~glp--~~i~~~~P~~~~~La~-R~-~g~~t~~~l~-~~~~~d~~l~ 410 (503)
T 2ywb_A 367 LLLGLP--DTLRLRHPFPGPGLAV-RV-LGEVTEERLE-ILRRADDIFT 410 (503)
T ss_dssp HHTTCC--HHHHSCCCCCTTGGGG-GB-SSCCCHHHHH-HHHHHHHHHH
T ss_pred HHcCCC--hhheecCCCCCcchhh-hc-cccccHHHHH-HHHHHHHHHH
Confidence 558887 6655555 4568852 11 2788998886 7888777754
No 28
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.33 E-value=1e-12 Score=143.98 Aligned_cols=163 Identities=20% Similarity=0.255 Sum_probs=97.5
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCc-------
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE------- 421 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~------- 421 (733)
.+++|++|||+||+++|+|+ .++ |.+ +.+++|...
T Consensus 18 ~kVvVa~SGGvDSsv~a~lL-------~~~---G~~----------------------------V~~v~~~~~~~~~~~~ 59 (380)
T 2der_A 18 KKVIVGMSGGVDSSVSAWLL-------QQQ---GYQ----------------------------VEGLFMKNWEEDDGEE 59 (380)
T ss_dssp CEEEEECCSCSTTHHHHHHH-------HTT---CCE----------------------------EEEEEEECCCCCSHHH
T ss_pred CEEEEEEEChHHHHHHHHHH-------HHc---CCe----------------------------EEEEEEEcCccccccC
Confidence 57999999999999998886 222 443 578888532
Q ss_pred -CChHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHH-Hh-hhCCCCceeecCCccccccchhhHHHHHHHHHHHHHH
Q 004719 422 -NSSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLF-QT-LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLA 497 (733)
Q Consensus 422 -~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~-~~-~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A 497 (733)
+++.++.++|+++|+.||++|+++++++.+.. +.+.+ .+ ..|.+| +++..+|...|.+. ++.+|
T Consensus 60 ~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tp----------npc~~Cnr~ik~~~--l~~~A 127 (380)
T 2der_A 60 YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTP----------NPDILCNKEIKFKA--FLEFA 127 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCC----------CHHHHHHHHTTTTH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCC----------ChhHHHHHHHHHHH--HHHHH
Confidence 13568899999999999999999999875532 22222 11 124443 45667776655554 33444
Q ss_pred hh-cccccCCCcEEEEeccCccc---------cccccccc-------cc----cCCCCCCCCCCCCcHHhHHHHHHHHHh
Q 004719 498 SL-LPWVHNKPGFYLVLGSSNVD---------EGLRGYLT-------KY----DCSSADINPIGSISKQDLRTFLRWAAT 556 (733)
Q Consensus 498 ~~-~~~~~~~~g~~lVlgT~N~s---------E~~~Gy~T-------~~----gd~~~~i~Pi~~l~K~~vr~l~~~~~~ 556 (733)
.. + +.-++.||+.. +.+.|... ++ +.....+.||++++|.+|+++ ++
T Consensus 128 ~~~~--------Gad~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~----A~ 195 (380)
T 2der_A 128 AEDL--------GADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKI----AE 195 (380)
T ss_dssp HHTT--------CCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHH----HH
T ss_pred Hhhc--------CCCEEEEccccccccccchHHHhcccccccccceeecCCChhhcceeEccCCCCCHHHHHHH----HH
Confidence 33 2 22345566532 22333321 11 112457999999999999999 56
Q ss_pred hcCCccchhhhcCCCCccccc
Q 004719 557 HLGYSSLAEIEAAPPTAELEP 577 (733)
Q Consensus 557 ~~g~p~l~~i~~~~psaeL~p 577 (733)
++|+| +.++|+|.+++-
T Consensus 196 ~~Gl~----~~~kp~s~~~cf 212 (380)
T 2der_A 196 DLGLV----TAKKKDSTGICF 212 (380)
T ss_dssp HTTCC----------------
T ss_pred HcCCC----CccCCCCCCccc
Confidence 68998 778898888764
No 29
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.32 E-value=1.6e-12 Score=138.84 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=108.9
Q ss_pred hhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHh
Q 004719 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (733)
Q Consensus 331 i~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~ 410 (733)
+......+|++++. .++++|+||||+||+++|+++ .+++| .+
T Consensus 6 ~~~~~~~~ir~~v~---~~kvlvalSGGvDSsvla~ll-------~~~~g--~~-------------------------- 47 (308)
T 2dpl_A 6 FVEEKVREIRETVG---DSKAIIALSGGVDSSTAAVLA-------HKAIG--DR-------------------------- 47 (308)
T ss_dssp HHHHHHHHHHHHHT---TSCEEEECCSSHHHHHHHHHH-------HHHHG--GG--------------------------
T ss_pred HHHHHHHHHHHHhC---CCCEEEEEeChHHHHHHHHHH-------HHhhC--CC--------------------------
Confidence 44455678888885 368999999999999999887 44443 22
Q ss_pred hhheeeeccCcCChHHHHHHHHH-HHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHH
Q 004719 411 RIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIR 489 (733)
Q Consensus 411 ~~~~~v~m~~~~ss~~t~~~A~~-lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R 489 (733)
++++++++......+.+.+++ +|+.+|++|++++++..+ .+.+.. . .++ ...+++..|.|
T Consensus 48 --v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~f---~~~l~~---~---------~~p--e~~~~~~~~~~ 108 (308)
T 2dpl_A 48 --LHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQDRF---FSALKG---V---------TDP--EEKRKIIGRVF 108 (308)
T ss_dssp --EEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECHHHH---HHHTTT---C---------CCH--HHHHHHHHHHH
T ss_pred --EEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEEECCHHH---HHhhhC---C---------CCH--HHHHHHHHHHH
Confidence 578888766544455667777 667999999999998642 222221 1 011 12345556666
Q ss_pred HHHHHHHHhhcccccCCCcEEEEeccC--ccccccccccccc---c----CCCCCCCCCCCCcHHhHHHHHHHHHhhcCC
Q 004719 490 MVLAFMLASLLPWVHNKPGFYLVLGSS--NVDEGLRGYLTKY---D----CSSADINPIGSISKQDLRTFLRWAATHLGY 560 (733)
Q Consensus 490 ~~~~~~~A~~~~~~~~~~g~~lVlgT~--N~sE~~~Gy~T~~---g----d~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~ 560 (733)
.-+++.+|+.+ +-..++.|+. +..|...|..++. | .....+.||.+++|.||++++ +.+|+
T Consensus 109 ~~~l~~~A~~~------g~~~la~Gh~~dD~~Et~~~iks~~~~~~l~~~~~~~virPL~~l~K~EI~~~a----~~~gl 178 (308)
T 2dpl_A 109 IEVFEEVAKKI------GAEYLIQGTIAPDWIESQGKIKSHHNVGGLPEKLNLKLIEPLRDLYKDEVRELA----KFLGL 178 (308)
T ss_dssp HHHHHHHHHHH------TCSEEECCCCCC---------------------CCCEEECTTTTCCHHHHHHHH----HHTTC
T ss_pred HHHHHHHHHHc------CcCEEEECCCCccchhhccchhhhhccccCCccCCCeEEEEcccCCHHHHHHHH----HHhCC
Confidence 66677777654 1134666653 2234433333322 1 124689999999999999994 55888
Q ss_pred ccchhhhcCCC--Ccccc
Q 004719 561 SSLAEIEAAPP--TAELE 576 (733)
Q Consensus 561 p~l~~i~~~~p--saeL~ 576 (733)
| ..++.+.| .++|.
T Consensus 179 p--~~i~~~~P~~~~~La 194 (308)
T 2dpl_A 179 P--EKIYNRMPFPGPGLA 194 (308)
T ss_dssp C--HHHHTCCCCCTTGGG
T ss_pred C--ceeeecCCCCccccc
Confidence 7 55555555 45665
No 30
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.23 E-value=1.4e-11 Score=141.45 Aligned_cols=174 Identities=15% Similarity=0.142 Sum_probs=104.5
Q ss_pred HHhhhcC-CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeecc
Q 004719 341 DYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG 419 (733)
Q Consensus 341 dyl~~sg-~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~ 419 (733)
+++|+.| .++++|+||||+||+++|+|+ .+++| .+ +++++|+
T Consensus 247 ~~ir~~g~~~~vvvalSGGvDSsv~a~ll-------~~~~G--~~----------------------------v~~v~vd 289 (556)
T 3uow_A 247 KNIEKYKHDHYVIAAMSGGIDSTVAAAYT-------HKIFK--ER----------------------------FFGIFID 289 (556)
T ss_dssp HHHGGGTTTCEEEEECCSSHHHHHHHHHH-------HHHHG--GG----------------------------EEEEEEE
T ss_pred eeeeecCCCceEEEEcccCCCHHHHHHHH-------HHHhC--Ce----------------------------EEEEEEe
Confidence 4444446 679999999999999999987 56663 22 5899998
Q ss_pred CcCChHHHHHHH-HHHHHHh-cccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHH
Q 004719 420 SENSSQETRMLA-KKLADEI-GSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLA 497 (733)
Q Consensus 420 ~~~ss~~t~~~A-~~lA~~l-Gi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A 497 (733)
+......+.+.| +.+|+.+ |++|+++|+++.+.. .+..+ +++ -...++-.+.+.-+...+|
T Consensus 290 ~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f~~---~l~g~------------~~p--e~kr~iig~~f~~vf~~~A 352 (556)
T 3uow_A 290 NGLLRKNEAENVYTFLKSTFPDMNITKIDASENFLS---NLQGV------------TDP--EQKRKIIGKLFIEEFEKAV 352 (556)
T ss_dssp CSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHHHH---HTTTC------------CCH--HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHHHH---hhcCC------------CCh--HHHHHHHHHHHHHHHHHHH
Confidence 766555555666 6799999 999999999875432 22211 011 1112232233333444455
Q ss_pred hhcccccCCCcEEEEeccCccc---cccc--c----ccccc-------cCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004719 498 SLLPWVHNKPGFYLVLGSSNVD---EGLR--G----YLTKY-------DCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 498 ~~~~~~~~~~g~~lVlgT~N~s---E~~~--G----y~T~~-------gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
..+.-+. ....++.|| |++ |... | ..+.. ......+.||.+++|+|||++ ++++|+|
T Consensus 353 ~~~~~~~--~~~~la~Gt-~y~D~ies~~~~g~~~~iks~~n~~gl~~~~~~~li~PL~~l~K~EVr~l----a~~lGlp 425 (556)
T 3uow_A 353 NNIDIDI--NKTFLLQGT-LYPDIIESKCSKNLSDTIKTHHNVGGLPKNLKFKLFEPFKYLFKDDVKTL----SRELNLP 425 (556)
T ss_dssp HTTCCCG--GGEEEECCC-CHHHHHHHSCC-------------------CCCEEECTTTTCCHHHHHHH----HHTTTCC
T ss_pred HHcCCcc--cccccccCc-cChHHHhhcccccccceecccccccccccccccceEeecccCcHHHHHHH----HHHcCCC
Confidence 4330000 014565665 232 3222 2 11111 122347889999999999999 6779988
Q ss_pred cchhhhcCCC--Cccccc
Q 004719 562 SLAEIEAAPP--TAELEP 577 (733)
Q Consensus 562 ~l~~i~~~~p--saeL~p 577 (733)
.+++.++| .|+|..
T Consensus 426 --~~~~~r~P~p~p~la~ 441 (556)
T 3uow_A 426 --EEITNRHPFPGPGLAI 441 (556)
T ss_dssp --HHHHHCCCCCTTTTTT
T ss_pred --HHHhCCCCCCCCCccc
Confidence 56555555 678865
No 31
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.21 E-value=3.1e-12 Score=129.08 Aligned_cols=169 Identities=16% Similarity=0.103 Sum_probs=96.8
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|+||||+||++++.++ .+. |.+ ++++++.....+..+.
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll-------~~~---~~~----------------------------v~~~~~~~~~~~~~e~ 45 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWA-------LKE---FEE----------------------------VETVTFHYNQRHSQEV 45 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH---CSE----------------------------EEEEEEESSCTTCHHH
T ss_pred CCEEEEccCcHHHHHHHHHH-------HHc---CCc----------------------------eEEEEEeCCCCCHHHH
Confidence 57999999999999988886 222 222 4677777655555778
Q ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHH-HhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCC
Q 004719 429 MLAKKLADEIGSWHLDVSIDTVVSAFLSLF-QTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~-~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~ 507 (733)
+.|+++|+.+|++|++++++.+.+...+.+ ..... .| +. .+..+.. +..+-..|. +.+++.+|+..
T Consensus 46 ~~a~~~a~~lgi~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~--~~~~~~~-~~~~r~~~~-~~~~~~~a~~~------- 112 (219)
T 3bl5_A 46 EVAKSIAEKLGVKNHLLDMSLLNQLAPNALTRNDIE-IE-VK--DGELPST-FVPGRNLVF-LSFASILAYQI------- 112 (219)
T ss_dssp HHHHHHHHTTCCCEEEEECGGGGGGSTGGGC------------------CC-CCTTHHHHH-HHHHHHHHHHH-------
T ss_pred HHHHHHHHHhCCCeEEEeChHHhhhccccccccccc-cc-cc--ccCCCCc-eeechHHHH-HHHHHHHHHHc-------
Confidence 999999999999999999875321100000 00000 00 00 0000111 111222221 13445556543
Q ss_pred cEEEEeccCcccccccccccc------c--c-------CCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCCCC
Q 004719 508 GFYLVLGSSNVDEGLRGYLTK------Y--D-------CSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPT 572 (733)
Q Consensus 508 g~~lVlgT~N~sE~~~Gy~T~------~--g-------d~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~ps 572 (733)
+.-++.||+..+-..||.+. . + .....+.||.+++|.||+++ ++++|+| ..+++.+||
T Consensus 113 -g~~~i~tG~~~dd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ii~PL~~~~K~ei~~~----a~~~glp--~~~~~~t~s 185 (219)
T 3bl5_A 113 -GARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWKL----ADELGAL--DFVKNNTLT 185 (219)
T ss_dssp -TCSEEECCCCC----CCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCCHHHHHHH----HHHTTCH--HHHHHHCCC
T ss_pred -CCCEEEEeccccccCCCCCCCHHHHHHHHHHHHhccCCCeEEEeccccCCHHHHHHH----HHHcCCC--ccchhheee
Confidence 23446666655445566431 1 1 23456999999999999999 4568875 567788888
Q ss_pred ccc
Q 004719 573 AEL 575 (733)
Q Consensus 573 aeL 575 (733)
..+
T Consensus 186 c~~ 188 (219)
T 3bl5_A 186 CYN 188 (219)
T ss_dssp STT
T ss_pred ccC
Confidence 653
No 32
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.13 E-value=8.3e-11 Score=120.19 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=52.3
Q ss_pred CCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHH
Q 004719 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (733)
Q Consensus 347 g~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~ 426 (733)
|.++++|++|||+||+++++++ .+. |.+ ++++++.....+..
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll-------~~~---~~~----------------------------v~av~~~~g~~~~~ 42 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQA-------LQD---YDD----------------------------VHCITFDYGQRHRA 42 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHH-------HHH---CSE----------------------------EEEEEEESSSSCHH
T ss_pred CCCCEEEEecCcHHHHHHHHHH-------HHc---CCC----------------------------EEEEEEECCCCCHH
Confidence 4568999999999999988886 332 222 46788876665667
Q ss_pred HHHHHHHHHHHhccc-ccccchhHH
Q 004719 427 TRMLAKKLADEIGSW-HLDVSIDTV 450 (733)
Q Consensus 427 t~~~A~~lA~~lGi~-~~~i~I~~~ 450 (733)
+.+.|+++|+.+|++ |++++++.+
T Consensus 43 e~~~a~~~a~~lgi~~~~vi~~~~l 67 (232)
T 2pg3_A 43 EIEVAQELSQKLGAAAHKVLDVGLL 67 (232)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred HHHHHHHHHHHhCCCceEEEeChhH
Confidence 899999999999999 999999843
No 33
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.11 E-value=3e-11 Score=137.96 Aligned_cols=174 Identities=21% Similarity=0.206 Sum_probs=105.6
Q ss_pred cchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhhe
Q 004719 335 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFY 414 (733)
Q Consensus 335 ~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 414 (733)
....+++++. .++++|+||||+||+++|+|+ .+++| .+ ++
T Consensus 220 ~i~~i~~~v~---~~kvlvalSGGvDSsvla~ll-------~~~~G--~~----------------------------v~ 259 (527)
T 3tqi_A 220 SIRDIQEKVG---KEQVIVGLSGGVDSAVTATLV-------HKAIG--DQ----------------------------LV 259 (527)
T ss_dssp HHHHHHHHHT---TSCEEEECTTTHHHHHHHHHH-------HHHHG--GG----------------------------EE
T ss_pred HHHHHHHhcC---CCeEEEEEecCcCHHHHHHHH-------HHHhC--Ce----------------------------EE
Confidence 3445555554 378999999999999999887 45553 22 57
Q ss_pred eeeccCcCChHHHHHHHHH-HHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHH
Q 004719 415 TVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLA 493 (733)
Q Consensus 415 ~v~m~~~~ss~~t~~~A~~-lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~ 493 (733)
++++.+...+..+.+.+.+ +|+.+|++|+++++++.+.. .+. | -. ++....++..|.+.-++
T Consensus 260 av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~~~---~l~---g---------~~--~~~~~r~~~~~~~~~~~ 322 (527)
T 3tqi_A 260 CVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRFMK---ALK---G---------IS--DPEEKRKIAGEQFIRVF 322 (527)
T ss_dssp EEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHHHS---SSS---S---------CC--CHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHHHH---hhc---C---------CC--ChhhhhhhhHHHHHHHH
Confidence 8888766555555666655 99999999999999864321 111 1 01 12234566666665555
Q ss_pred HHHHhhcccccCCCcEEEEecc--Ccccccc---ccc----cccc---c----CCCCCCCCCCCCcHHhHHHHHHHHHhh
Q 004719 494 FMLASLLPWVHNKPGFYLVLGS--SNVDEGL---RGY----LTKY---D----CSSADINPIGSISKQDLRTFLRWAATH 557 (733)
Q Consensus 494 ~~~A~~~~~~~~~~g~~lVlgT--~N~sE~~---~Gy----~T~~---g----d~~~~i~Pi~~l~K~~vr~l~~~~~~~ 557 (733)
..+|..+ +...|+.|+ .+..|.. .|. .+.+ | .....+.||.+++|.||+++ +++
T Consensus 323 ~~~A~~~------g~~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~~~~~~~iirPL~~l~K~EIr~~----a~~ 392 (527)
T 3tqi_A 323 EEQAKKL------NVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKL----GLE 392 (527)
T ss_dssp HHTTTTT------TCCEEECCCCHHHHHCC--------------------------CEECTTTTCCHHHHHHH----HHH
T ss_pred HHHHHHc------CCCEEEccccCCccccccccCCChhheeeeecccccCcccccCccccchhcCCHHHHHHH----HHH
Confidence 5555332 223455554 2222321 111 1111 1 12346789999999999999 566
Q ss_pred cCCccchh-hhcCC-CCccccc
Q 004719 558 LGYSSLAE-IEAAP-PTAELEP 577 (733)
Q Consensus 558 ~g~p~l~~-i~~~~-psaeL~p 577 (733)
+|+| .. ++.+| |.++|..
T Consensus 393 lGlp--~~~v~~~P~p~~~l~~ 412 (527)
T 3tqi_A 393 LGLP--ADLIYRHPFPGPGLAI 412 (527)
T ss_dssp HTCC--HHHHTCCCCCTTGGGS
T ss_pred cCCC--hhhhccCCCCCCCcce
Confidence 8988 43 37788 8899853
No 34
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.10 E-value=2.3e-10 Score=126.85 Aligned_cols=159 Identities=20% Similarity=0.189 Sum_probs=101.3
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCc-CChHH
Q 004719 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQE 426 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~-~ss~~ 426 (733)
..+++|++|||+||++++.++ .+ . |.+ ++++++... ..++.
T Consensus 187 ~~kvlvalSGGvDS~vll~ll-------~~-~--G~~----------------------------v~av~v~~~~~~~~~ 228 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLT-------MK-R--GVS----------------------------VEAVHFHSPPFTSER 228 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHH-------HH-B--TEE----------------------------EEEEEEECTTTSCHH
T ss_pred CCeEEEEeCCCChHHHHHHHH-------HH-c--CCc----------------------------EEEEEEeCCCCCCHH
Confidence 357999999999999988876 22 1 433 467777653 45677
Q ss_pred HHHHHHHHHHHh-----cccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHH-HHHHHHHhhc
Q 004719 427 TRMLAKKLADEI-----GSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRM-VLAFMLASLL 500 (733)
Q Consensus 427 t~~~A~~lA~~l-----Gi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~-~~~~~~A~~~ 500 (733)
+.+.++++|+.+ |++|+++++++.+.++. ... | + ...++.+|-.| ..++.+|...
T Consensus 229 ~~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~i~---~~~----~----------~--~~~c~~~Rr~~~~~~~~~A~~~ 289 (413)
T 2c5s_A 229 AKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTIN---KEI----P----------S--SYSMTVMRRMMMRITERIAEER 289 (413)
T ss_dssp HHHHHHHHHHHHGGGSSCEEEEEEECHHHHHHHH---HHS----C----------G--GGHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHH---hcC----C----------c--ccHHHHHHHHHHHHHHHHHHHc
Confidence 888999999999 99999999987654322 110 1 1 11233444322 3455666543
Q ss_pred ccccCCCcEEEEeccC--cc-cccccccccc-ccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCCCCcccc
Q 004719 501 PWVHNKPGFYLVLGSS--NV-DEGLRGYLTK-YDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELE 576 (733)
Q Consensus 501 ~~~~~~~g~~lVlgT~--N~-sE~~~Gy~T~-~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~psaeL~ 576 (733)
+...++.|+. +. ++.+.|+.+. .+.....+.||.+++|.||+++ ++++|++ .+..+|+++-+
T Consensus 290 ------g~~~I~tG~~~dD~ae~~l~~l~~~~~~~~~~virPL~~l~K~eI~~~----a~~~Gl~----~~~~~p~~~~c 355 (413)
T 2c5s_A 290 ------NALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKI----AEEIGTY----DISIRPYEDCC 355 (413)
T ss_dssp ------TCCEEECCCCSSSTTSCCHHHHHHHGGGCCSCEECTTTTCCHHHHHHH----HHHTTCH----HHHTSCC----
T ss_pred ------CCCEEEEcccchhhHHHHHHHHhcccccCCCEEEeccCCCCHHHHHHH----HHHcCCC----ccccCCCCCCC
Confidence 2245667763 22 2345566653 3456778999999999999999 4568876 44556665444
Q ss_pred c
Q 004719 577 P 577 (733)
Q Consensus 577 p 577 (733)
|
T Consensus 356 ~ 356 (413)
T 2c5s_A 356 T 356 (413)
T ss_dssp -
T ss_pred e
Confidence 4
No 35
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=98.89 E-value=8.6e-10 Score=121.49 Aligned_cols=151 Identities=14% Similarity=0.079 Sum_probs=93.4
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|++|||+||++++.++ .+++ |.+ ++++++.... .++.
T Consensus 1 ~kVvva~SGG~DSsvll~ll-------~~~~--g~~----------------------------V~av~vd~g~--~~e~ 41 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWL-------KETY--RAE----------------------------VIAFTADIGQ--GEEV 41 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHHH--TCE----------------------------EEEEEEESSC--SSCH
T ss_pred CcEEEEEeChHHHHHHHHHH-------HHhh--CCc----------------------------EEEEEEeCCC--HHHH
Confidence 36999999999999988876 3443 233 4678887654 4568
Q ss_pred HHHHHHHHHhcc-cccccchhHHHHH-H-HHHHHhhhCCCCceeecCCccccccchhhHHHH-HHHHHHHHHHhhccccc
Q 004719 429 MLAKKLADEIGS-WHLDVSIDTVVSA-F-LSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR-IRMVLAFMLASLLPWVH 504 (733)
Q Consensus 429 ~~A~~lA~~lGi-~~~~i~I~~~~~~-~-~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR-~R~~~~~~~A~~~~~~~ 504 (733)
+.++++|+.+|+ +|+++++++.+.. + ...+.. +..+. ....+++..+| +++..+..+|+..
T Consensus 42 e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~--~~~~e---------~~y~~g~~~~R~~~~~~L~~~A~~~---- 106 (400)
T 1kor_A 42 EEAREKALRTGASKAIALDLKEEFVRDFVFPMMRA--GAVYE---------GYYLLGTSIARPLIAKHLVRIAEEE---- 106 (400)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHT--TCCBT---------TTBCCTTTTHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhCCCeEEEEeCcHHHHHHhhHHHHHc--CCccc---------cccccCCccchHHHHHHHHHHHHHc----
Confidence 999999999999 7999999864421 1 122221 11110 00112222233 3344556666543
Q ss_pred CCCcEEEEeccCcc------ccccccccccccCCCCCCCCCCCC---cHHhHHHHHHHHHhhcCCcc
Q 004719 505 NKPGFYLVLGSSNV------DEGLRGYLTKYDCSSADINPIGSI---SKQDLRTFLRWAATHLGYSS 562 (733)
Q Consensus 505 ~~~g~~lVlgT~N~------sE~~~Gy~T~~gd~~~~i~Pi~~l---~K~~vr~l~~~~~~~~g~p~ 562 (733)
| .-++.||+. +|...|+.++..+ ...+.|+.++ +|.+|++++ +..|+|.
T Consensus 107 ---G-~~~IatG~~~d~nDq~~f~~g~~~l~p~-l~ii~PL~~~~~~tK~eI~~ya----~~~gip~ 164 (400)
T 1kor_A 107 ---G-AEAIAHGATGKGNDQVRFELTAYALKPD-IKVIAPWREWSFQGRKEMIAYA----EAHGIPV 164 (400)
T ss_dssp ---T-CSEEECCCCTTSSHHHHHHHHHHHHCTT-CEEECGGGTCCCCSHHHHHHHH----HHTTCCC
T ss_pred ---C-CCEEEECCCCCcccHHHHHHHHHhcCCC-CEEEEeecccccCCHHHHHHHH----HHcCCCc
Confidence 2 233444442 2455677666543 3569999988 999999995 4577773
No 36
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.72 E-value=7e-09 Score=103.92 Aligned_cols=139 Identities=18% Similarity=0.144 Sum_probs=81.9
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHH
Q 004719 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t 427 (733)
.++++|++|||+||++++.++ ... |.+ +.++++.....+ +
T Consensus 6 ~~kv~v~~SGG~DS~~ll~ll--------~~~--g~~----------------------------v~~~~v~~~~~~--~ 45 (203)
T 3k32_A 6 LMDVHVLFSGGKDSSLSAVIL--------KKL--GYN----------------------------PHLITINFGVIP--S 45 (203)
T ss_dssp CEEEEEECCCSHHHHHHHHHH--------HHT--TEE----------------------------EEEEEEECSSSC--T
T ss_pred CCeEEEEEECcHHHHHHHHHH--------HHc--CCC----------------------------eEEEEEeCCCch--H
Confidence 468999999999999988775 222 332 356666554433 6
Q ss_pred HHHHHHHHHHhcccccccchhHHH-HHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCC
Q 004719 428 RMLAKKLADEIGSWHLDVSIDTVV-SAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 428 ~~~A~~lA~~lGi~~~~i~I~~~~-~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~ 506 (733)
.+.|+++|+.+|++|++++++..+ ......+.. .+. -.|...|+|..++..+|+ +
T Consensus 46 ~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~-~~~----------------~~~~c~~~~~~~l~~~A~------g- 101 (203)
T 3k32_A 46 YKLAEETAKILGFKHKVITLDRKIVEKAADMIIE-HKY----------------PGPAIQYVHKTVLEILAD------E- 101 (203)
T ss_dssp THHHHHHHHHHTCEEEEEECCTHHHHHHHHHHHH-HSS----------------SHHHHHHHHHHHHHHHTT------T-
T ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-cCC----------------CccHHHHHHHHHHHHHhc------C-
Confidence 789999999999999999998643 222222221 010 123344555544444442 1
Q ss_pred CcEEEEeccCcccccc-----cccccccc-CCCCCCCCCCCCcHHhHHHHHH
Q 004719 507 PGFYLVLGSSNVDEGL-----RGYLTKYD-CSSADINPIGSISKQDLRTFLR 552 (733)
Q Consensus 507 ~g~~lVlgT~N~sE~~-----~Gy~T~~g-d~~~~i~Pi~~l~K~~vr~l~~ 552 (733)
...++.| .|.++.+ .|...... .+...+.||.+++|.+|+++++
T Consensus 102 -~~~i~tG-h~~dD~~et~~~~gl~~~~~~~~~~iirPLl~~~k~eI~~~a~ 151 (203)
T 3k32_A 102 -YSILADG-TRRDDRVPKLSYSEIQSLEMRKNIQYITPLMGFGYKTLRHLAS 151 (203)
T ss_dssp -CSEEECC-CCTTCCSSCCCHHHHHHHHHHHTCEEECGGGGCCHHHHHHHHH
T ss_pred -CCEEEEC-CCcccchhhcchhhccCcccccCCeEEeccCCCCHHHHHHHHH
Confidence 1223333 3344322 11111100 1235789999999999999953
No 37
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.68 E-value=1.3e-08 Score=111.89 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=51.0
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
+++||++|||+|||++|+++ .+. |.+ +++++|..... ++.
T Consensus 15 ~KVVVA~SGGlDSSv~a~~L-------ke~---G~e----------------------------Viavt~d~Gq~--~El 54 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWL-------CEK---GFD----------------------------VIAYVANVGQK--DDF 54 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHT---TCE----------------------------EEEEEEESSCC--CCH
T ss_pred CCEEEEeCCcHHHHHHHHHH-------HHC---CCe----------------------------EEEEEEEcCCH--HHH
Confidence 57999999999999998886 332 454 57888876542 568
Q ss_pred HHHHHHHHHhcc-cccccchhHHH
Q 004719 429 MLAKKLADEIGS-WHLDVSIDTVV 451 (733)
Q Consensus 429 ~~A~~lA~~lGi-~~~~i~I~~~~ 451 (733)
++|+++|+.+|+ +|+++|+.+.+
T Consensus 55 e~A~~vA~~lGi~~~~VvDl~eef 78 (421)
T 1vl2_A 55 VAIKEKALKTGASKVYVEDLRREF 78 (421)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHcCCceEEEEecHHHH
Confidence 999999999999 99999998644
No 38
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.66 E-value=2.1e-08 Score=110.78 Aligned_cols=149 Identities=16% Similarity=0.121 Sum_probs=88.2
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|++|||+||++++.++ .+. |.+ ++++++..... .+.
T Consensus 6 ~kVvvalSGGlDSsvll~lL-------~e~---G~e----------------------------V~av~vd~g~~--~e~ 45 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWL-------KEQ---GYD----------------------------VIAYLANIGQK--EDF 45 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHH-------HHT---TEE----------------------------EEEEEEESSCC--CCH
T ss_pred CeEEEEEcChHHHHHHHHHH-------HHc---CCE----------------------------EEEEEEECCcH--HHH
Confidence 68999999999999988876 222 333 46777765443 458
Q ss_pred HHHHHHHHHhccc-ccccchhHHHHH-HH-HHHHhhhCCCCceeecCCccccccchhhHHHH-HHHHHHHHHHhhccccc
Q 004719 429 MLAKKLADEIGSW-HLDVSIDTVVSA-FL-SLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR-IRMVLAFMLASLLPWVH 504 (733)
Q Consensus 429 ~~A~~lA~~lGi~-~~~i~I~~~~~~-~~-~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR-~R~~~~~~~A~~~~~~~ 504 (733)
+.|+++|+.+|++ |+++++++.+.. +. ..+.. +.. + ..+ ....+..+| +|+..+..+|+..
T Consensus 46 e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~--~a~--~------e~~-y~~g~~~aRp~i~~~l~~~A~~~---- 110 (413)
T 2nz2_A 46 EEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQS--SAL--Y------EDR-YLLGTSLARPCIARKQVEIAQRE---- 110 (413)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHT--TCC--B------TTT-BCCTTTTHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHHh--Ccc--c------ccc-cccccccchHHHHHHHHHHHHHc----
Confidence 9999999999998 888998754421 11 11211 100 0 001 111122233 3344455566543
Q ss_pred CCCcEEEEeccCccc------cccccccccccCCCCCCCCCC------CC-cHHhHHHHHHHHHhhcCCc
Q 004719 505 NKPGFYLVLGSSNVD------EGLRGYLTKYDCSSADINPIG------SI-SKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 505 ~~~g~~lVlgT~N~s------E~~~Gy~T~~gd~~~~i~Pi~------~l-~K~~vr~l~~~~~~~~g~p 561 (733)
|.-++.||+.. |..+|+.....+ ...+.|+. ++ +|++|++++ +++|+|
T Consensus 111 ----Ga~~IatGh~~~~nDq~rf~lg~~~l~p~-l~ii~Pl~d~~~ll~~~sK~EI~~yA----~~~Gip 171 (413)
T 2nz2_A 111 ----GAKYVSHGATGKGNDQVRFELSCYSLAPQ-IKVIAPWRMPEFYNRFKGRNDLMEYA----KQHGIP 171 (413)
T ss_dssp ----TCSEEECCCCTTSSHHHHHHHHHHHHCTT-CEEECGGGCHHHHTTCC-CHHHHHHH----HHTTCC
T ss_pred ----CCCEEEECCcCcccchHHHHHHHHhcCCC-CceeccccchhhhccCCCHHHHHHHH----HHcCCC
Confidence 22345555433 233454444322 46789999 88 999999994 557776
No 39
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.63 E-value=1.1e-07 Score=95.91 Aligned_cols=72 Identities=13% Similarity=0.027 Sum_probs=53.9
Q ss_pred hhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeec
Q 004719 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (733)
Q Consensus 339 L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m 418 (733)
|+..+++.| .+++|++|||.||++++.|+ .+. +.+ +.++++
T Consensus 36 l~~~~~~~~-~~v~Va~SGGkDS~vLL~ll-------~~~---~~~----------------------------v~~v~v 76 (215)
T 1sur_A 36 VAWALDNLP-GEYVLSSSFGIQAAVSLHLV-------NQI---RPD----------------------------IPVILT 76 (215)
T ss_dssp HHHHHHHCC-SEEEEECCCCTTHHHHHHHH-------HHH---STT----------------------------CEEEEE
T ss_pred HHHHHHHcC-CCEEEEecCCHHHHHHHHHH-------HHh---CCC----------------------------CeEEEe
Confidence 334444443 58999999999999988876 222 111 467777
Q ss_pred cCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004719 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 419 ~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
.+....+++.+.++++|+.+|++++++..+.
T Consensus 77 d~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 77 DTGYLFPETYRFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp ECSCBCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred eCCCCCHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 7666678899999999999999999887653
No 40
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.47 E-value=1.8e-07 Score=100.02 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=86.8
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcC--ChH
Q 004719 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQ 425 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~--ss~ 425 (733)
.++++|++|||+||++++.++.... +.+ |.++ +.++++.... .+.
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~----~~~--g~~~---------------------------v~av~vd~g~r~~s~ 70 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLK----NYF--SLKE---------------------------VALAHFNHMLRESAE 70 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHST----TTT--TCSE---------------------------EEEEEEECCSSTHHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHH----HHc--CCCE---------------------------EEEEEEECCCCcccH
Confidence 4689999999999999888762110 001 1110 2566665433 367
Q ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccC
Q 004719 426 ETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHN 505 (733)
Q Consensus 426 ~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~ 505 (733)
.+.+.++++|+.+|++|++++++.. . +....+ .+. +..-.+.|...+..+|+..
T Consensus 71 ~~~~~v~~~a~~lgi~~~v~~~~~~--~----~~~~~~----------~~~-----e~~ar~~Ry~~l~~~a~~~----- 124 (317)
T 1wy5_A 71 RDEEFCKEFAKERNMKIFVGKEDVR--A----FAKENR----------MSL-----EEAGRFLRYKFLKEILESE----- 124 (317)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCHH--H----HHHHTT----------CCH-----HHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCcEEEEEEech--h----hhccCC----------CCH-----HHHHHHHHHHHHHHHHHHc-----
Confidence 8889999999999999999988741 1 111111 111 2222245555566666543
Q ss_pred CCcEEEEeccC--cccccc-----cc-----ccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004719 506 KPGFYLVLGSS--NVDEGL-----RG-----YLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 506 ~~g~~lVlgT~--N~sE~~-----~G-----y~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
+...+++|.. +..|.. .| ...+.......+.|+.+++|.||++++ +..|+|
T Consensus 125 -g~~~i~~Gh~~dD~~Et~l~~l~rg~g~~gl~~~~~~~~~iirPLl~~~k~eI~~~~----~~~gl~ 187 (317)
T 1wy5_A 125 -GFDCIATAHHLNDLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEEYA----KFKGLR 187 (317)
T ss_dssp -TCSEEECCCCHHHHHHHHHHHHHHCCCHHHHHCSCSEETTEECTTTTCCHHHHHHHH----HHTTCC
T ss_pred -CCCEEEEeCchhHHHHHHHHHHHhCCCcccccCCCCCCCeEECCCccCCHHHHHHHH----HHcCCC
Confidence 1123444432 223421 11 111110112689999999999999994 557887
No 41
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.40 E-value=2e-07 Score=103.52 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=51.2
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|++|||+||++++.++ .+. |.+ ++++++.....+.++.
T Consensus 11 ~KVvVA~SGGlDSSvll~~L-------~e~---G~e----------------------------Viavtvd~Gq~~~~el 52 (455)
T 1k92_A 11 QRIGIAFSGGLDTSAALLWM-------RQK---GAV----------------------------PYAYTANLGQPDEEDY 52 (455)
T ss_dssp SEEEEECCSSHHHHHHHHHH-------HHT---TCE----------------------------EEEEEEECCCTTCSCT
T ss_pred CeEEEEEcChHHHHHHHHHH-------HHc---CCE----------------------------EEEEEEEcCCCCHHHH
Confidence 58999999999999988876 222 444 4677776544444578
Q ss_pred HHHHHHHHHhcc-cccccchhHHHH
Q 004719 429 MLAKKLADEIGS-WHLDVSIDTVVS 452 (733)
Q Consensus 429 ~~A~~lA~~lGi-~~~~i~I~~~~~ 452 (733)
+.|+++|+.+|+ +|+++|+++.+.
T Consensus 53 e~a~~~A~~lGi~~~~vvD~~eef~ 77 (455)
T 1k92_A 53 DAIPRRAMEYGAENARLIDCRKQLV 77 (455)
T ss_dssp THHHHHHHHHTCSEEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeChHHHH
Confidence 999999999999 899999986443
No 42
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.37 E-value=1.1e-06 Score=90.92 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=50.0
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
.+++|++|||+||++++.|+ .+. +++ +..+++.+....++|.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll-------~~~---~~~----------------------------v~vv~idtg~~~~et~ 87 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLV-------NQI---RPD----------------------------IPVILTDTGYLFPETY 87 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHH-------HHH---STT----------------------------CEEEECCCSCBCHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHH-------HHh---CCC----------------------------CeEEEecCCCCCHHHH
Confidence 57999999999999988876 222 111 4677887777778999
Q ss_pred HHHHHHHHHhcccccccchh
Q 004719 429 MLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~ 448 (733)
+.++++|+.+|++++++..+
T Consensus 88 ~~~~~~~~~~gi~~~v~~~~ 107 (252)
T 2o8v_A 88 RFIDELTDKLKLNLKVYRAT 107 (252)
T ss_dssp HHHHHHHHHTTCEEEECCCS
T ss_pred HHHHHHHHHhCCceEEEcCC
Confidence 99999999999999888765
No 43
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.34 E-value=9.1e-07 Score=99.47 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=86.4
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCC---h
Q 004719 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS---S 424 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~s---s 424 (733)
..+++|++|||+||++++.++..+. +.. |.+ ++++++..... |
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~----~~~--~~~----------------------------v~avhvdhglrg~~s 63 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLR----DEW--KLQ----------------------------VIAAHVDHMFRGRES 63 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHH----HTT--TCB----------------------------CEEEEEECTTCTHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHH----HHc--CCe----------------------------EEEEEEECCCCcccc
Confidence 3679999999999999888763211 111 111 46777765443 5
Q ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhccccc
Q 004719 425 QETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVH 504 (733)
Q Consensus 425 ~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~ 504 (733)
..+.+.++++|+.+|++|++++++.. . +.... +.+. +..-.+.|...+..+|...
T Consensus 64 ~~~~~~v~~~~~~lgi~~~v~~~~~~--~----~~~~~----------~~~~-----e~~aR~~Ry~~l~~~a~~~---- 118 (464)
T 3a2k_A 64 EEEMEFVKRFCVERRILCETAQIDVP--A----FQRSA----------GLGA-----QEAARICRYRFFAELMEKH---- 118 (464)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCH--H----HHTTT----------TCCS-----HHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHcCCcEEEEEechh--h----hhhcc----------CCCH-----HHHHHHHHHHHHHHHHHHc----
Confidence 67788999999999999999988631 1 11100 1111 2222345555566666532
Q ss_pred CCCcEEEEeccCc-cc---cc-----ccccc--ccccC-------CCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004719 505 NKPGFYLVLGSSN-VD---EG-----LRGYL--TKYDC-------SSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 505 ~~~g~~lVlgT~N-~s---E~-----~~Gy~--T~~gd-------~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
| .-+|.||+ .+ |. .+|-. .+.|. ....+-|+.+++|.||++++ +..|+|
T Consensus 119 ---g-~~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~ya----~~~gl~ 185 (464)
T 3a2k_A 119 ---Q-AGYVAVGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAYC----RQMGLS 185 (464)
T ss_dssp ---T-CCEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSCSEEECSSSEEECGGGGSCHHHHHHHH----HHTCCS
T ss_pred ---C-cCEEEEeCChHHHHHHHHHHHHcCCCcccccCCCccccCCCCEEECCCccCcHHHHHHHH----HHcCCC
Confidence 2 22344443 22 31 12211 11111 13578999999999999994 556776
No 44
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.19 E-value=1.8e-06 Score=96.24 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=52.4
Q ss_pred hhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHh--cCchhhhhhHhHhccccCCCCCCChHHHHhhhheee
Q 004719 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIS--NGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (733)
Q Consensus 339 L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~--~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v 416 (733)
|.+++... ++++|++|||+||++++.++. +... .|.+ ++++
T Consensus 6 l~~~l~~~--~~vlVa~SGG~DS~~Ll~ll~-------~~~~~~~g~~----------------------------v~av 48 (433)
T 1ni5_A 6 LNRQLLTS--RQILVAFSGGLDSTVLLHQLV-------QWRTENPGVA----------------------------LRAI 48 (433)
T ss_dssp HHHHHTTC--SEEEEECCSBHHHHHHHHHHH-------HHHTTSTTCE----------------------------EEEE
T ss_pred HHHhcCCC--CEEEEEEcchHHHHHHHHHHH-------HHHHhcCCCe----------------------------EEEE
Confidence 55666553 579999999999999888762 2111 0111 4667
Q ss_pred eccCc--CChHHHHHHHHHHHHHhcccccccchh
Q 004719 417 FMGSE--NSSQETRMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 417 ~m~~~--~ss~~t~~~A~~lA~~lGi~~~~i~I~ 448 (733)
++... ..|+.+.+.++++|+.+|++|++++++
T Consensus 49 hvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~ 82 (433)
T 1ni5_A 49 HVHHGLSANADAWVTHCENVCQQWQVPLVVERVQ 82 (433)
T ss_dssp EECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred EEECCCCcccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 76543 345677889999999999999999886
No 45
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=98.19 E-value=7.3e-07 Score=94.85 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=46.8
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
.+++++||| +||+++|+++ .+ +|.+ +++++|. .++.+.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll-------~~---~G~~----------------------------v~~v~~~---~~~~~~ 217 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLM-------MK---RGVE----------------------------VIPVYIG---KDDKNL 217 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHH-------HH---BTCE----------------------------EEEEEES---CSSHHH
T ss_pred CcEEEEEeC-CcHHHHHHHH-------Hh---CCCe----------------------------EEEEEEE---ECHHHH
Confidence 478999999 9999988886 22 2554 5788886 455678
Q ss_pred HHHHHHHHHh-------cccccccc-hhHHH
Q 004719 429 MLAKKLADEI-------GSWHLDVS-IDTVV 451 (733)
Q Consensus 429 ~~A~~lA~~l-------Gi~~~~i~-I~~~~ 451 (733)
+.|+++|+.| |++++.+| ..+.+
T Consensus 218 ~~a~~~a~~l~~~~~~~~i~~~vv~~~~~~~ 248 (307)
T 1vbk_A 218 EKVRSLWNLLKRYSYGSKGFLVVAESFDRVL 248 (307)
T ss_dssp HHHHHHHHHHHTTCTTSCCCCEEESSHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCcEEEeCCCHHHH
Confidence 9999999999 77777777 66543
No 46
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.15 E-value=9.3e-07 Score=100.56 Aligned_cols=82 Identities=29% Similarity=0.316 Sum_probs=56.4
Q ss_pred chhhhcCcchhhhHHhhhc--CCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCCh
Q 004719 328 EEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDS 405 (733)
Q Consensus 328 ~eei~~~~~~~L~dyl~~s--g~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~ 405 (733)
.++....+...|.+-+++. ....+.+.||||+|||++|+++ .+.. .+
T Consensus 219 ~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala-------~~~~---~~--------------------- 267 (513)
T 1jgt_A 219 EGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACA-------HRAA---GE--------------------- 267 (513)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHH-------HHHH---SS---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHH-------HHhC---CC---------------------
Confidence 3444444555566666552 2357999999999999999987 2321 11
Q ss_pred HHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004719 406 REFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 406 ~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
+.++++.... ..+...|+++|+.+|++|+++++++
T Consensus 268 -------v~tfti~~~~--~~E~~~A~~vA~~lg~~h~~i~i~~ 302 (513)
T 1jgt_A 268 -------LDTVSMGTDT--SNEFREARAVVDHLRTRHREITIPT 302 (513)
T ss_dssp -------CEEEEEECSS--CCCHHHHHHHHHHHTCEEEEEECCH
T ss_pred -------ceEEEcCCCC--CCHHHHHHHHHHHhCCCcEEEECCH
Confidence 2445544333 2457899999999999999999886
No 47
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.08 E-value=1.2e-06 Score=99.58 Aligned_cols=61 Identities=30% Similarity=0.408 Sum_probs=45.3
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004719 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
..+.+.||||+|||++|+++. +. +.+ +.++++....+ .+.
T Consensus 239 ~~v~v~LSGGlDSs~vaala~-------~~---~~~----------------------------~~~~t~~~~~~--~E~ 278 (503)
T 1q15_A 239 DTVGIPLSGGLDSSLVTALAS-------RH---FKK----------------------------LNTYSIGTELS--NEF 278 (503)
T ss_dssp SEEEEECCSSHHHHHHHHHHT-------TT---CSE----------------------------EEEEEEEETTB--CCH
T ss_pred CcEEEECCCCHHHHHHHHHHH-------Hh---CCC----------------------------cEEEEEeCCCc--cHH
Confidence 578899999999999998862 11 111 24455443332 457
Q ss_pred HHHHHHHHHhcccccccchhH
Q 004719 429 MLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~ 449 (733)
..|+++|+.+|++|+++++++
T Consensus 279 ~~A~~vA~~lg~~h~~i~~~~ 299 (503)
T 1q15_A 279 EFSQQVADALGTHHQMKILSE 299 (503)
T ss_dssp HHHHHHHHHHTCEEEEEEECH
T ss_pred HHHHHHHHHhCCceEEEECCH
Confidence 899999999999999999987
No 48
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.00 E-value=8.9e-06 Score=93.34 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=53.3
Q ss_pred hhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHH
Q 004719 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (733)
Q Consensus 330 ei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~ 409 (733)
++...+...++.+|+. ...+.+.||||+|||++|+++ .+.. .+....+..... +-|
T Consensus 210 ~lr~~L~~aV~~rl~s--dvpvgv~LSGGlDSS~iaala-------~~~~---~~~~~~~~~~~a-----~~~------- 265 (553)
T 1ct9_A 210 ELRQALEDSVKSHLMS--DVPYGVLLSGGLDSSIISAIT-------KKYA---ARRVEDQERSEA-----WWP------- 265 (553)
T ss_dssp HHHHHHHHHHHHHTCC--SSCEEEECCSSHHHHHHHHHH-------HHHC------------------------------
T ss_pred HHHHHHHHHHHHHhcC--CCceEEeCCCCccHHHHHHHH-------HHhh---cccccccccccc-----ccC-------
Confidence 3333333334444432 346889999999999999987 2322 110000000000 000
Q ss_pred hhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004719 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 410 ~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
-+++++++...+ .+...|+++|+.||+.|++++++.
T Consensus 266 --~l~tfsig~~~~--~E~~~A~~vA~~lg~~h~~i~~~~ 301 (553)
T 1ct9_A 266 --QLHSFAVGLPGS--PDLKAAQEVANHLGTVHHEIHFTV 301 (553)
T ss_dssp ---CEEEEEESTTC--HHHHHHHHHHHHHTCEEEEEECCH
T ss_pred --ceeEEEecCCCC--cHHHHHHHHHHHhCCCCEEEECCH
Confidence 035666654443 578999999999999999998875
No 49
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=97.76 E-value=3.6e-05 Score=81.77 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=56.0
Q ss_pred hhHHhhhcCC--ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccC----CCCCCChHHHHhhh
Q 004719 339 LWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYAN----GEFPTDSREFAKRI 412 (733)
Q Consensus 339 L~dyl~~sg~--~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~----~~~p~~~~~~~~~~ 412 (733)
|.+.+++.+. ..++|++|||.||+|++.|+ .++++. .... .+..... ...|. .-
T Consensus 42 l~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~-------~~~l~~---~~~~---~~~~~~~~~~~~~~~~-------~~ 101 (306)
T 2wsi_A 42 LSEIFVRWSPLNGEISFSYNGGKDCQVLLLLY-------LSCLWE---YFFI---KAQNSQFDFEFQSFPM-------QR 101 (306)
T ss_dssp HHTTTTTSCSSSSSEEEECCSCHHHHHHHHHH-------HHHHHH---HHHH---HHHHC--------CCC-------CC
T ss_pred HHHHHHHcccccCCEEEEecCCHHHHHHHHHH-------HHHHhh---hccc---ccccccccccccccCC-------CC
Confidence 3344555543 57999999999999988887 233210 0000 0000000 00000 00
Q ss_pred heeeeccCcCChHHHHHHHHHHHHHhcccccccchh
Q 004719 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 413 ~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~ 448 (733)
+..++..+....++|.+.++++++.+|++++++..+
T Consensus 102 i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~ 137 (306)
T 2wsi_A 102 LPTVFIDQEETFPTLENFVLETSERYCLSLYESQRQ 137 (306)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-
T ss_pred eeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 467888887788999999999999999999888765
No 50
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.71 E-value=8.6e-05 Score=76.98 Aligned_cols=73 Identities=8% Similarity=-0.080 Sum_probs=53.2
Q ss_pred hhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeec
Q 004719 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (733)
Q Consensus 339 L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m 418 (733)
|+..+++. .+++|++|||.||++++.|+ .+.... ... +..+++
T Consensus 34 l~~a~~~~--~~v~va~SGGkDS~vLL~ll-------~~~~~~-~~~---------------------------i~vv~i 76 (261)
T 2oq2_A 34 IAWSIVTF--PHLFQTTAFGLTGLVTIDML-------SKLSEK-YYM---------------------------PELLFI 76 (261)
T ss_dssp HHHHHHHC--SSEEEECCCCHHHHHHHHHH-------HHHTTT-SCC---------------------------CEEEEE
T ss_pred HHHHHHHC--CCEEEEecCCHHHHHHHHHH-------HHhCcc-CCC---------------------------eeEEEe
Confidence 44444444 37999999999999988876 233210 000 457778
Q ss_pred cCcCChHHHHHHHHHHHHHhcc----cccccchh
Q 004719 419 GSENSSQETRMLAKKLADEIGS----WHLDVSID 448 (733)
Q Consensus 419 ~~~~ss~~t~~~A~~lA~~lGi----~~~~i~I~ 448 (733)
.+....++|.+.++++++.+|+ +++++..+
T Consensus 77 Dtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~ 110 (261)
T 2oq2_A 77 DTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPD 110 (261)
T ss_dssp CCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECST
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecC
Confidence 7777778999999999999999 88887654
No 51
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.68 E-value=9.5e-05 Score=79.12 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=54.0
Q ss_pred hhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeec
Q 004719 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (733)
Q Consensus 339 L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m 418 (733)
|+..+.+. .+++|++|||.||++++.|+ .+++..+.. + +..++.
T Consensus 39 lr~~~~~~--~~ivVa~SGGkDS~vLL~Ll-------~~~~~~~~~-----------------~----------i~vv~v 82 (325)
T 1zun_A 39 IREVAAEF--DNPVMLYSIGKDSAVMLHLA-------RKAFFPGKL-----------------P----------FPVMHV 82 (325)
T ss_dssp HHHHHHHC--SSEEEECCSSHHHHHHHHHH-------HHHHTTSCC-----------------S----------SCEEEE
T ss_pred HHHHHHhC--CCEEEEEcChHHHHHHHHHH-------HHhccccCC-----------------C----------EEEEEE
Confidence 44444443 47999999999999988876 333321000 1 457788
Q ss_pred cCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004719 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 419 ~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
.+....+++.+.++++|+.+|+++.++..+.
T Consensus 83 Dtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 113 (325)
T 1zun_A 83 DTRWKFQEMYRFRDQMVEEMGLDLITHINPD 113 (325)
T ss_dssp CCSCCCHHHHHHHHHHHHTTTCCEEEECC--
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 7777778999999999999999999888754
No 52
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=97.65 E-value=0.00024 Score=74.15 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=53.0
Q ss_pred hhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeec
Q 004719 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (733)
Q Consensus 339 L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m 418 (733)
|+..++..| .+++|++| |.||++++.|+ .+ + +.+ +..+++
T Consensus 46 l~~a~~~~g-~~i~Va~S-GkDS~vLL~Ll-------~~-~--~~~----------------------------i~vv~i 85 (275)
T 2goy_A 46 LKAAFEHFG-DELWISFS-GAEDVVLVDMA-------WK-L--NRN----------------------------VKVFSL 85 (275)
T ss_dssp HHHHHHHHS-TTEEEECC-SSTTHHHHHHH-------HH-H--CTT----------------------------CCEEEE
T ss_pred HHHHHHHcC-CCEEEEee-cHHHHHHHHHH-------HH-h--CCC----------------------------ceEEEE
Confidence 333344434 67999999 99999988876 22 2 221 357778
Q ss_pred cCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004719 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 419 ~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
.+....++|.+.++++++.+|+++.++..+.
T Consensus 86 Dtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 116 (275)
T 2goy_A 86 DTGRLHPETYRFIDQVREHYGIAIDVLSPDP 116 (275)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTCCCEEECCCH
T ss_pred eCCCCCHHHHHHHHHHHHHHCCeEEEEeCCc
Confidence 8777788999999999999999998886653
No 53
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.51 E-value=2.6e-05 Score=79.59 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=42.6
Q ss_pred CCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeec--cCc-CC
Q 004719 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM--GSE-NS 423 (733)
Q Consensus 347 g~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m--~~~-~s 423 (733)
+..++++++|||.||+++++++ .+ +|.+ | .++++ +.. .+
T Consensus 3 ~~MKvvvl~SGGkDSs~al~~l-------~~---~G~e-V---------------------------~~L~~~~~~~~~s 44 (237)
T 3rjz_A 3 GLADVAVLYSGGKDSNYALYWA-------IK---NRFS-V---------------------------KFLVTMVSENEES 44 (237)
T ss_dssp CCSEEEEECCSSHHHHHHHHHH-------HH---TTCE-E---------------------------EEEEEEECC----
T ss_pred CCCEEEEEecCcHHHHHHHHHH-------HH---cCCe-E---------------------------EEEEEEcCCCCCc
Confidence 3357999999999999988776 22 3555 2 33322 111 01
Q ss_pred ---hHHHHHHHHHHHHHhcccccccchhH
Q 004719 424 ---SQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 424 ---s~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
+....+.|+.+|+.||++|+++++..
T Consensus 45 ~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 45 YMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp ----CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred cccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 12335789999999999999999874
No 54
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=92.58 E-value=0.11 Score=54.67 Aligned_cols=92 Identities=10% Similarity=0.132 Sum_probs=55.0
Q ss_pred hhhHHhhhcCC--ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccC-CCCCCChHHHHhhhhe
Q 004719 338 WLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYAN-GEFPTDSREFAKRIFY 414 (733)
Q Consensus 338 ~L~dyl~~sg~--~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~-~~~p~~~~~~~~~~~~ 414 (733)
-|+.-+++.+. ..++|+.|||.||+|++-|+ .+++. +.++.....-..... ...|. .. +-
T Consensus 46 iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~-------~kal~---~~~~~~~~~~~~~~~~~~~p~--~~-----ip 108 (308)
T 3fwk_A 46 LINETFPKWSPLNGEISFSYNGGKDCQVLLLLY-------LSCLW---EYYIVKLSQSQFDGKFHRFPL--TK-----LP 108 (308)
T ss_dssp HHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHH-------HHHHH---HHHTCCE------------------------E
T ss_pred HHHHHHHHcccccCCEEEEecCChhHHHHHHHH-------HHHhh---hhcccccccccccccccccCC--CC-----cc
Confidence 45555666654 67999999999999988887 33331 000000000000000 00000 01 46
Q ss_pred eeeccCcCChHHHHHHHHHHHHHhcccccccc
Q 004719 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDVS 446 (733)
Q Consensus 415 ~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~ 446 (733)
.++..|...-++|.+...++++.+|+...++.
T Consensus 109 vifiDTG~~FpET~ef~d~~~~~ygL~L~v~~ 140 (308)
T 3fwk_A 109 TVFIDHDDTFKTLENFIEETSLRYSLSLYESD 140 (308)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHTTEEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 78888888889999999999999998776553
No 55
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=37.24 E-value=19 Score=36.33 Aligned_cols=59 Identities=17% Similarity=0.057 Sum_probs=39.3
Q ss_pred ccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004719 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 19 e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
+..++.+.+.|+.|++-|++.+++. +|+.+.+ ..+..+...+.|.++++.++++|+.+.
T Consensus 98 ~~~~~~~~~~i~~a~~lG~~~v~~~----~G~~~~~---~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 156 (290)
T 3tva_A 98 ASRVAEMKEISDFASWVGCPAIGLH----IGFVPES---SSPDYSELVRVTQDLLTHAANHGQAVH 156 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEC----CCCCCCT---TSHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEc----CCCCccc---chHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3456788899999999999988863 4665444 222334455567777766656777654
No 56
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=37.22 E-value=22 Score=36.52 Aligned_cols=58 Identities=16% Similarity=-0.043 Sum_probs=37.3
Q ss_pred ccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004719 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 19 e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
+...+.+.+.|+.|++-|+..|++| |+... ...+-.+...+.|.++++.++++||.+.
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~~-----~~~~~---~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 167 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQP-----SLPRI---ENEDDAKVVSEIFNRAGEITKKAGILWG 167 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEC-----CCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeC-----CCCCC---CCHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4456778888999999999999987 22221 1112233445567777776666787664
No 57
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=33.98 E-value=21 Score=35.74 Aligned_cols=63 Identities=8% Similarity=-0.064 Sum_probs=37.5
Q ss_pred ccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004719 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 17 D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
+.+..++.+.+.|+.|+.-|+..+++ .+|+...+.. ..+..+...+.|.++++.++++|+.+.
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~----~~g~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 140 (286)
T 3dx5_A 78 DFEKTIEKCEQLAILANWFKTNKIRT----FAGQKGSADF-SQQERQEYVNRIRMICELFAQHNMYVL 140 (286)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEE----CSCSSCGGGS-CHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEE----cCCCCCcccC-cHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 34556778888999999999998864 2344332211 112234445566666665555676543
No 58
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=30.76 E-value=32 Score=34.28 Aligned_cols=59 Identities=12% Similarity=-0.127 Sum_probs=36.6
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004719 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
..++.+.+.|+.|+.-|++.+++. +| ...+. ...+..+...+.|.++++.++++|+.+.
T Consensus 90 ~~~~~~~~~i~~A~~lGa~~v~~~----~g-~~~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 148 (269)
T 3ngf_A 90 EFRDNVDIALHYALALDCRTLHAM----SG-ITEGL-DRKACEETFIENFRYAADKLAPHGITVL 148 (269)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECC----BC-BCTTS-CHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEc----cC-CCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 356778889999999999988863 34 22111 1122334455667777766656776554
No 59
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=30.37 E-value=17 Score=36.09 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=36.3
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004719 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
..++.+.+.|+.|+.-|+..++++ +|+.........+..+...+.|.++++.++++|+.+.
T Consensus 80 ~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 140 (275)
T 3qc0_A 80 KAIDDNRRAVDEAAELGADCLVLV----AGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLA 140 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEE----CBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEe----eCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 456778889999999999988865 4443221111122234445566666665555665543
No 60
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=27.74 E-value=39 Score=33.15 Aligned_cols=60 Identities=7% Similarity=-0.232 Sum_probs=37.0
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004719 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
..++.+.+.|+.|++-|+..+++. +|+...+. ...+..+...+.+.++++.++++|+.+.
T Consensus 82 ~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 141 (260)
T 1k77_A 82 EAHADIDLALEYALALNCEQVHVM----AGVVPAGE-DAERYRAVFIDNIRYAADRFAPHGKRIL 141 (260)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECC----CCBCCTTS-CHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEC----cCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 456778889999999999988773 35433221 1122233445566666666555676553
No 61
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=26.22 E-value=27 Score=35.24 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=34.6
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeeccccc-ccccccccchhhhHHHHHHHhccCCCCceee
Q 004719 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGC-EDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~-~D~~~~~~~~~~~~~~L~~La~~~~~~~i~i 83 (733)
..++.+.+.|+.|++-|++.++++ |+.. .+. ...+..+...+.|.++++.++++|+.+
T Consensus 105 ~~~~~~~~~i~~A~~lG~~~v~~~-----~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l 163 (295)
T 3cqj_A 105 QGLEIMRKAIQFAQDVGIRVIQLA-----GYDVYYQE-ANNETRRRFRDGLKESVEMASRAQVTL 163 (295)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEC-----CCSCSSSC-CCHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEC-----CCCCCcCc-CHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 346778899999999999999986 3321 111 111223344455666666554566544
No 62
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=25.93 E-value=32 Score=34.52 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccc-c-ccccchhhhHHHHHHHhccCCCCceeee
Q 004719 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDH-F-LELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~-~-~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
..++.+.+.|+.|+.-|++.|+++ +|+...+. . ...+..+...+.|.++++.++++||.+.
T Consensus 101 ~~~~~~~~~i~~a~~lGa~~v~~~----~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 163 (287)
T 3kws_A 101 ECMDTMKEIIAAAGELGSTGVIIV----PAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVI 163 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEC----SCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEe----cCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 456788889999999999988774 45443221 0 1222334445566666666556776543
No 63
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=23.53 E-value=44 Score=32.99 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=36.3
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceee
Q 004719 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~i 83 (733)
..++.+.+.++.|++-|++.+++ .+|+...+. ...+..+...+.+.++++.++++|+.+
T Consensus 81 ~~~~~~~~~i~~a~~lG~~~v~~----~~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l 139 (278)
T 1i60_A 81 EIITEFKGMMETCKTLGVKYVVA----VPLVTEQKI-VKEEIKKSSVDVLTELSDIAEPYGVKI 139 (278)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEE----ECCBCSSCC-CHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEE----ecCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 45778889999999999998887 245443211 112223444556666666655567654
No 64
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=22.57 E-value=1.1e+02 Score=28.81 Aligned_cols=62 Identities=10% Similarity=-0.080 Sum_probs=34.3
Q ss_pred cccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeeecCcc
Q 004719 16 LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMP 88 (733)
Q Consensus 16 ~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~iivG~p 88 (733)
.|+-.|...+.+.++.+.+.++|+||+ ++|++......+...+.++.|.+. ...++++.|.-
T Consensus 12 SD~H~~~~~~~~~~~~~~~~~~D~vi~---------~GDl~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GNH 73 (228)
T 1uf3_A 12 SNPMGDLEALEKFVKLAPDTGADAIAL---------IGNLMPKAAKSRDYAAFFRILSEA--HLPTAYVPGPQ 73 (228)
T ss_dssp ECCTTCHHHHHHHHTHHHHHTCSEEEE---------ESCSSCTTCCHHHHHHHHHHHGGG--CSCEEEECCTT
T ss_pred eeccCCHHHHHHHHHHHhhcCCCEEEE---------CCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEECCCC
Confidence 355555666666666666668887753 355543321222333455666543 23577888853
No 65
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=22.40 E-value=40 Score=33.35 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004719 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
..++.+.+.|+.|+.-|+..|+++ ..+|. +. ...+..+...+.|.++++.++++|+.+.
T Consensus 81 ~~~~~~~~~i~~A~~lG~~~v~~~--~~p~~---~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 139 (281)
T 3u0h_A 81 RELSLLPDRARLCARLGARSVTAF--LWPSM---DE-EPVRYISQLARRIRQVAVELLPLGMRVG 139 (281)
T ss_dssp HHHHTHHHHHHHHHHTTCCEEEEE--CCSEE---SS-CHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEe--ecCCC---CC-cchhhHHHHHHHHHHHHHHHHHcCCEEE
Confidence 445677889999999999998843 11111 11 1112334455667777766556776553
Done!