BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004720
         (733 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 31.2 bits (69), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEY 503
           +N  +  ++  DY+ + E ++K+   L  D  N    A+++  L   Y      D A EY
Sbjct: 13  YNLGNAYYKQGDYDEAIEYYQKA---LELDPNN----AEAWYNLGNAYYKQGDYDEAIEY 65

Query: 504 ITEAEKLEPNIASAFLKF-KIYLQKNDQEGAI 534
             +A +L+PN A A+      Y ++ D + AI
Sbjct: 66  YQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 97


>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
          Length = 125

 Score = 30.0 bits (66), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEY 503
           +N  +  ++  DY+ + E ++K++   P + E       ++  L   Y      D A EY
Sbjct: 13  YNLGNAYYKQGDYDEAIEYYQKALELYPNNAE-------AWYNLGNAYYKQGDYDEAIEY 65

Query: 504 ITEAEKLEPNIASAFLKF-KIYLQKNDQEGAI 534
             +A +L PN A A+      Y ++ D + AI
Sbjct: 66  YQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,508,036
Number of Sequences: 62578
Number of extensions: 603410
Number of successful extensions: 1420
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1419
Number of HSP's gapped (non-prelim): 11
length of query: 733
length of database: 14,973,337
effective HSP length: 106
effective length of query: 627
effective length of database: 8,340,069
effective search space: 5229223263
effective search space used: 5229223263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)