Query 004720
Match_columns 733
No_of_seqs 223 out of 321
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 11:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4814 Uncharacterized conser 100.0 1.1E-58 2.4E-63 500.6 42.2 595 66-723 5-653 (872)
2 PF08631 SPO22: Meiosis protei 100.0 5.6E-27 1.2E-31 248.2 28.6 262 189-468 2-274 (278)
3 KOG4626 O-linked N-acetylgluco 99.9 4E-22 8.8E-27 216.9 28.3 370 132-581 116-488 (966)
4 KOG0624 dsRNA-activated protei 99.9 2.3E-20 4.9E-25 191.9 31.4 379 131-599 37-422 (504)
5 TIGR00990 3a0801s09 mitochondr 99.9 3E-19 6.4E-24 210.0 42.2 367 129-549 124-577 (615)
6 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-17 4.4E-22 199.6 54.8 201 134-372 24-253 (899)
7 KOG0550 Molecular chaperone (D 99.9 3.1E-20 6.7E-25 195.5 24.4 393 106-624 24-431 (486)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.2E-17 2.5E-22 201.7 48.5 390 185-667 504-895 (899)
9 PRK11447 cellulose synthase su 99.8 9.7E-17 2.1E-21 201.0 48.4 408 137-618 274-739 (1157)
10 KOG4626 O-linked N-acetylgluco 99.8 1.9E-18 4E-23 188.7 27.9 319 133-549 151-491 (966)
11 PRK11447 cellulose synthase su 99.8 5.7E-17 1.2E-21 203.2 41.5 396 134-576 305-739 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.8 6.4E-16 1.4E-20 181.8 43.9 370 180-621 127-573 (615)
13 PRK15174 Vi polysaccharide exp 99.8 4E-16 8.7E-21 184.2 42.1 331 139-581 49-385 (656)
14 PRK15174 Vi polysaccharide exp 99.8 4.6E-15 1E-19 175.2 39.3 294 187-577 49-347 (656)
15 KOG4814 Uncharacterized conser 99.7 5.7E-14 1.2E-18 154.4 39.6 420 219-677 352-843 (872)
16 PRK11788 tetratricopeptide rep 99.7 9.4E-15 2E-19 161.7 33.9 305 181-577 36-347 (389)
17 KOG2002 TPR-containing nuclear 99.7 3.9E-13 8.5E-18 154.6 46.9 488 138-673 170-710 (1018)
18 KOG0548 Molecular co-chaperone 99.7 1.1E-14 2.3E-19 158.8 27.7 341 133-550 3-462 (539)
19 KOG0547 Translocase of outer m 99.7 7.9E-14 1.7E-18 149.9 29.3 205 277-545 362-568 (606)
20 PRK11788 tetratricopeptide rep 99.6 1.2E-12 2.5E-17 145.0 38.3 305 224-623 38-351 (389)
21 PRK10049 pgaA outer membrane p 99.6 1.4E-12 3E-17 157.1 41.7 356 187-580 22-425 (765)
22 PRK10049 pgaA outer membrane p 99.6 2E-12 4.4E-17 155.7 41.1 384 144-581 27-460 (765)
23 KOG2002 TPR-containing nuclear 99.6 2.4E-11 5.3E-16 140.1 38.3 426 139-600 206-727 (1018)
24 KOG1126 DNA-binding cell divis 99.5 7.3E-13 1.6E-17 147.8 24.2 305 127-576 312-619 (638)
25 PRK09782 bacteriophage N4 rece 99.5 3.2E-10 6.9E-15 138.2 48.4 468 126-680 37-643 (987)
26 KOG2076 RNA polymerase III tra 99.5 1.9E-10 4.1E-15 132.2 41.7 356 180-576 139-554 (895)
27 KOG1840 Kinesin light chain [C 99.5 3.6E-12 7.9E-17 143.3 25.5 266 180-510 199-479 (508)
28 KOG1126 DNA-binding cell divis 99.5 1.5E-12 3.3E-17 145.3 20.9 271 133-549 354-626 (638)
29 PRK14574 hmsH outer membrane p 99.5 1.1E-09 2.5E-14 131.0 45.3 402 132-581 34-517 (822)
30 PRK09782 bacteriophage N4 rece 99.5 4.7E-11 1E-15 145.3 32.7 289 192-576 450-739 (987)
31 KOG0547 Translocase of outer m 99.4 6.5E-10 1.4E-14 120.2 34.3 359 218-621 112-493 (606)
32 PRK12370 invasion protein regu 99.4 3E-11 6.6E-16 140.4 25.7 238 183-545 261-504 (553)
33 TIGR02521 type_IV_pilW type IV 99.4 1E-10 2.2E-15 117.6 24.6 203 219-543 29-232 (234)
34 TIGR02521 type_IV_pilW type IV 99.4 2.5E-10 5.5E-15 114.8 25.3 202 273-576 29-231 (234)
35 PRK11189 lipoprotein NlpI; Pro 99.4 2.5E-10 5.5E-15 122.3 25.9 244 193-529 39-286 (296)
36 PF13429 TPR_15: Tetratricopep 99.3 5.7E-12 1.2E-16 133.7 12.1 171 135-349 11-182 (280)
37 KOG2003 TPR repeat-containing 99.3 1.6E-09 3.4E-14 115.7 29.0 401 136-602 241-707 (840)
38 TIGR00540 hemY_coli hemY prote 99.3 2.5E-09 5.4E-14 119.9 32.2 119 447-571 270-393 (409)
39 TIGR00540 hemY_coli hemY prote 99.3 7E-09 1.5E-13 116.3 35.1 303 183-542 87-398 (409)
40 COG3063 PilF Tfp pilus assembl 99.3 5.9E-10 1.3E-14 110.9 22.8 200 274-576 34-234 (250)
41 KOG4162 Predicted calmodulin-b 99.3 1.9E-08 4.1E-13 114.3 37.8 372 144-548 335-788 (799)
42 PRK10747 putative protoheme IX 99.3 5.1E-09 1.1E-13 116.9 32.7 300 131-543 83-390 (398)
43 PLN03218 maturation of RBCL 1; 99.3 3.7E-08 8E-13 121.2 41.2 325 189-576 446-782 (1060)
44 KOG1840 Kinesin light chain [C 99.3 1.5E-09 3.3E-14 122.3 26.1 263 219-544 197-480 (508)
45 COG3063 PilF Tfp pilus assembl 99.2 6.9E-10 1.5E-14 110.5 19.8 172 126-340 29-200 (250)
46 PRK12370 invasion protein regu 99.2 1.6E-09 3.5E-14 126.1 26.5 234 223-579 260-504 (553)
47 PLN03218 maturation of RBCL 1; 99.2 1.2E-07 2.6E-12 116.8 42.5 334 140-549 445-788 (1060)
48 PRK10747 putative protoheme IX 99.2 3.9E-08 8.4E-13 109.9 35.0 300 185-578 89-391 (398)
49 KOG1173 Anaphase-promoting com 99.2 1.1E-08 2.5E-13 112.7 27.4 336 129-557 138-535 (611)
50 KOG1155 Anaphase-promoting com 99.2 5.6E-09 1.2E-13 112.5 23.8 248 137-471 267-538 (559)
51 PLN03081 pentatricopeptide (PP 99.2 6.5E-08 1.4E-12 115.9 36.0 286 277-618 261-556 (697)
52 KOG1155 Anaphase-promoting com 99.2 8.8E-08 1.9E-12 103.5 32.4 359 134-595 166-550 (559)
53 KOG0624 dsRNA-activated protei 99.2 4.9E-08 1.1E-12 101.8 29.4 362 108-582 52-426 (504)
54 PF13429 TPR_15: Tetratricopep 99.2 1.9E-10 4.2E-15 122.0 12.1 262 280-576 13-276 (280)
55 PRK14574 hmsH outer membrane p 99.1 4.1E-07 9E-12 109.2 40.5 354 185-581 39-449 (822)
56 PLN03077 Protein ECB2; Provisi 99.1 1.4E-07 3E-12 115.7 37.4 320 187-580 361-689 (857)
57 PLN03077 Protein ECB2; Provisi 99.1 2.1E-07 4.6E-12 114.1 38.4 356 187-614 260-649 (857)
58 KOG2076 RNA polymerase III tra 99.1 1.3E-06 2.9E-11 101.2 39.0 316 223-575 141-510 (895)
59 PLN03081 pentatricopeptide (PP 99.1 2.5E-07 5.5E-12 110.8 34.0 263 277-577 292-557 (697)
60 KOG2003 TPR repeat-containing 99.1 2.9E-07 6.4E-12 98.7 30.2 285 225-565 423-711 (840)
61 KOG1173 Anaphase-promoting com 99.0 1.3E-08 2.8E-13 112.2 20.2 245 181-517 279-526 (611)
62 KOG0548 Molecular co-chaperone 99.0 6.7E-07 1.4E-11 98.6 32.6 344 224-599 5-437 (539)
63 PRK11189 lipoprotein NlpI; Pro 99.0 8.3E-08 1.8E-12 102.9 24.6 217 240-545 42-267 (296)
64 KOG0553 TPR repeat-containing 99.0 1.9E-09 4.1E-14 111.3 11.0 99 443-548 84-183 (304)
65 TIGR03302 OM_YfiO outer membra 99.0 8.8E-08 1.9E-12 98.7 23.4 190 218-509 30-231 (235)
66 KOG1174 Anaphase-promoting com 99.0 2.6E-07 5.6E-12 98.6 26.9 198 278-512 303-502 (564)
67 KOG1129 TPR repeat-containing 99.0 3.6E-08 7.9E-13 102.2 19.1 270 179-544 184-459 (478)
68 KOG0495 HAT repeat protein [RN 99.0 3.3E-05 7.1E-10 86.9 42.6 377 143-581 387-786 (913)
69 PF12569 NARP1: NMDA receptor- 98.9 1.5E-06 3.1E-11 99.4 31.6 313 277-623 6-338 (517)
70 TIGR03302 OM_YfiO outer membra 98.9 8.1E-08 1.8E-12 98.9 18.4 191 129-341 30-231 (235)
71 PF14938 SNAP: Soluble NSF att 98.8 7.1E-07 1.5E-11 95.0 23.1 250 126-544 4-267 (282)
72 PRK15359 type III secretion sy 98.8 8E-08 1.7E-12 91.8 14.2 105 443-554 27-132 (144)
73 cd05804 StaR_like StaR_like; a 98.8 2.5E-05 5.3E-10 85.4 34.3 312 185-624 11-341 (355)
74 KOG4234 TPR repeat-containing 98.8 7.2E-08 1.6E-12 93.9 12.4 101 444-546 99-200 (271)
75 cd05804 StaR_like StaR_like; a 98.8 1.6E-05 3.4E-10 86.9 32.8 307 138-576 12-335 (355)
76 KOG1125 TPR repeat-containing 98.8 1.9E-07 4.1E-12 103.6 17.2 87 189-302 294-380 (579)
77 KOG0543 FKBP-type peptidyl-pro 98.7 1.6E-07 3.4E-12 101.0 15.1 105 445-549 213-326 (397)
78 KOG1130 Predicted G-alpha GTPa 98.7 5.8E-07 1.3E-11 95.8 18.9 127 138-289 23-149 (639)
79 KOG0553 TPR repeat-containing 98.7 2.8E-08 6E-13 102.8 8.6 108 126-260 75-182 (304)
80 KOG1130 Predicted G-alpha GTPa 98.7 3.3E-07 7.1E-12 97.6 16.7 263 228-542 24-303 (639)
81 KOG0495 HAT repeat protein [RN 98.7 7.6E-06 1.7E-10 91.8 27.6 342 137-549 521-886 (913)
82 KOG1125 TPR repeat-containing 98.7 4.7E-07 1E-11 100.5 18.2 233 225-544 289-528 (579)
83 COG2956 Predicted N-acetylgluc 98.7 8.9E-06 1.9E-10 84.9 26.2 265 189-576 44-310 (389)
84 PLN03088 SGT1, suppressor of 98.7 2.4E-07 5.2E-12 101.9 15.1 104 443-553 5-109 (356)
85 PF12569 NARP1: NMDA receptor- 98.7 4.2E-05 9.1E-10 87.6 33.7 328 181-598 5-357 (517)
86 COG2956 Predicted N-acetylgluc 98.7 9.4E-06 2E-10 84.7 25.5 103 446-553 147-250 (389)
87 KOG2376 Signal recognition par 98.7 0.00028 6.1E-09 79.0 38.1 341 185-577 17-405 (652)
88 PLN02789 farnesyltranstransfer 98.6 6.9E-06 1.5E-10 88.8 24.0 216 188-526 45-267 (320)
89 KOG4162 Predicted calmodulin-b 98.6 0.00018 4E-09 82.6 36.1 368 181-580 358-786 (799)
90 PRK15363 pathogenicity island 98.6 4.8E-07 1E-11 86.4 12.6 100 443-549 38-138 (157)
91 PRK04841 transcriptional regul 98.6 0.0003 6.5E-09 86.9 40.8 380 181-644 375-779 (903)
92 TIGR02552 LcrH_SycD type III s 98.6 5.7E-07 1.2E-11 84.1 13.0 102 442-550 19-121 (135)
93 KOG1129 TPR repeat-containing 98.6 2E-06 4.3E-11 89.5 17.3 274 218-576 178-457 (478)
94 PF14938 SNAP: Soluble NSF att 98.6 6.6E-06 1.4E-10 87.6 22.0 192 126-341 29-224 (282)
95 COG3071 HemY Uncharacterized e 98.6 0.00014 3.1E-09 78.1 30.9 138 127-304 79-216 (400)
96 PRK15359 type III secretion sy 98.6 7.1E-07 1.5E-11 85.3 12.5 106 186-322 30-135 (144)
97 PRK04841 transcriptional regul 98.5 0.00017 3.7E-09 89.0 36.1 178 142-340 419-600 (903)
98 PF13414 TPR_11: TPR repeat; P 98.5 3E-07 6.5E-12 75.7 7.7 61 445-512 8-69 (69)
99 KOG1156 N-terminal acetyltrans 98.5 0.00031 6.8E-09 79.4 33.0 349 144-544 87-469 (700)
100 PF08631 SPO22: Meiosis protei 98.5 4.6E-05 1E-09 81.0 25.5 223 437-670 32-273 (278)
101 KOG0550 Molecular chaperone (D 98.5 5.6E-06 1.2E-10 88.8 18.1 199 179-526 168-368 (486)
102 PF12895 Apc3: Anaphase-promot 98.5 3.1E-07 6.6E-12 79.1 7.2 82 452-539 1-83 (84)
103 KOG3060 Uncharacterized conser 98.5 0.00012 2.5E-09 74.5 26.3 205 240-525 28-236 (289)
104 KOG1127 TPR repeat-containing 98.5 7.3E-05 1.6E-09 87.6 27.6 346 144-539 504-909 (1238)
105 PRK10370 formate-dependent nit 98.5 8.5E-06 1.8E-10 82.1 18.0 122 453-581 52-177 (198)
106 PRK10370 formate-dependent nit 98.5 3.2E-06 6.9E-11 85.3 14.5 96 446-548 79-178 (198)
107 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.9E-06 8.4E-11 76.0 13.6 103 442-548 4-110 (119)
108 KOG4648 Uncharacterized conser 98.4 8E-07 1.7E-11 92.8 9.3 98 445-549 102-200 (536)
109 PLN02789 farnesyltranstransfer 98.4 8.2E-05 1.8E-09 80.5 24.8 208 277-552 39-259 (320)
110 KOG1128 Uncharacterized conser 98.4 4.8E-05 1E-09 86.9 23.6 147 446-600 491-638 (777)
111 KOG1174 Anaphase-promoting com 98.4 3.9E-05 8.5E-10 82.3 21.5 249 134-474 234-505 (564)
112 KOG1156 N-terminal acetyltrans 98.4 0.00084 1.8E-08 76.1 32.9 355 192-576 53-467 (700)
113 PF13424 TPR_12: Tetratricopep 98.4 1.2E-06 2.6E-11 74.1 7.5 71 439-510 4-75 (78)
114 KOG3785 Uncharacterized conser 98.4 0.00057 1.2E-08 72.3 28.5 397 111-576 41-489 (557)
115 PRK15179 Vi polysaccharide bio 98.4 1.6E-05 3.5E-10 94.1 19.4 132 443-581 89-221 (694)
116 cd00189 TPR Tetratricopeptide 98.3 5.1E-06 1.1E-10 69.8 11.0 94 443-543 3-97 (100)
117 KOG1127 TPR repeat-containing 98.3 0.00034 7.3E-09 82.3 28.7 303 187-509 637-995 (1238)
118 PRK14720 transcript cleavage f 98.3 0.00012 2.7E-09 87.7 26.1 265 180-525 31-304 (906)
119 KOG4642 Chaperone-dependent E3 98.3 1.7E-06 3.7E-11 86.7 7.5 92 446-544 16-108 (284)
120 KOG2376 Signal recognition par 98.3 0.0087 1.9E-07 67.5 37.0 329 182-611 112-479 (652)
121 PF13424 TPR_12: Tetratricopep 98.2 8.4E-06 1.8E-10 68.8 9.8 73 180-255 5-77 (78)
122 KOG0551 Hsp90 co-chaperone CNS 98.2 5E-06 1.1E-10 87.0 9.8 96 445-543 86-182 (390)
123 KOG1941 Acetylcholine receptor 98.2 0.00081 1.8E-08 71.4 25.7 340 129-624 3-365 (518)
124 PRK02603 photosystem I assembl 98.2 2E-05 4.4E-10 77.4 13.2 89 443-535 38-127 (172)
125 CHL00033 ycf3 photosystem I as 98.2 2.2E-05 4.9E-10 76.7 13.3 91 445-539 40-138 (168)
126 PF04733 Coatomer_E: Coatomer 98.2 0.00027 5.8E-09 75.5 22.4 93 454-553 181-275 (290)
127 PF13432 TPR_16: Tetratricopep 98.2 8.1E-06 1.7E-10 66.4 8.3 63 445-514 2-65 (65)
128 TIGR02552 LcrH_SycD type III s 98.2 7.8E-05 1.7E-09 69.5 16.1 111 462-579 5-116 (135)
129 KOG0543 FKBP-type peptidyl-pro 98.2 4.7E-05 1E-09 82.2 16.2 122 219-349 206-327 (397)
130 PF13414 TPR_11: TPR repeat; P 98.2 6.2E-06 1.3E-10 67.8 7.3 65 480-544 2-68 (69)
131 PRK15179 Vi polysaccharide bio 98.2 5.6E-05 1.2E-09 89.6 17.9 123 187-340 93-215 (694)
132 KOG4340 Uncharacterized conser 98.1 0.002 4.3E-08 66.9 25.8 275 240-623 26-336 (459)
133 KOG3785 Uncharacterized conser 98.1 0.0013 2.8E-08 69.7 24.7 214 287-543 34-248 (557)
134 COG3071 HemY Uncharacterized e 98.1 0.0047 1E-07 66.7 29.1 291 187-571 91-384 (400)
135 PLN03088 SGT1, suppressor of 98.1 3E-05 6.4E-10 85.4 12.9 111 183-324 5-115 (356)
136 PF13525 YfiO: Outer membrane 98.1 0.00053 1.1E-08 69.4 20.8 192 221-502 5-199 (203)
137 PRK15331 chaperone protein Sic 98.1 2.7E-05 5.8E-10 74.9 10.2 92 445-543 42-134 (165)
138 PF09976 TPR_21: Tetratricopep 98.0 0.00014 3E-09 69.4 14.9 125 189-339 20-144 (145)
139 PRK10866 outer membrane biogen 98.0 0.00017 3.7E-09 75.1 16.7 192 131-339 31-238 (243)
140 PRK10866 outer membrane biogen 98.0 0.0011 2.5E-08 68.9 22.5 198 222-505 33-236 (243)
141 PF14559 TPR_19: Tetratricopep 98.0 1.3E-05 2.7E-10 65.7 5.9 67 450-523 1-68 (68)
142 PRK15363 pathogenicity island 98.0 0.00013 2.8E-09 70.0 12.7 98 180-304 35-132 (157)
143 PF12895 Apc3: Anaphase-promot 97.9 5.8E-05 1.3E-09 64.8 9.3 84 192-301 1-84 (84)
144 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00025 5.5E-09 63.9 13.9 100 482-581 3-109 (119)
145 KOG4234 TPR repeat-containing 97.9 8.5E-05 1.8E-09 72.9 10.6 108 127-253 90-197 (271)
146 COG5010 TadD Flp pilus assembl 97.9 0.00041 9E-09 71.0 15.3 119 446-571 106-225 (257)
147 CHL00033 ycf3 photosystem I as 97.9 0.00017 3.6E-09 70.5 12.2 116 127-256 30-145 (168)
148 cd00189 TPR Tetratricopeptide 97.8 0.00019 4.2E-09 59.9 10.9 94 483-576 2-96 (100)
149 PF13432 TPR_16: Tetratricopep 97.8 5.9E-05 1.3E-09 61.2 7.3 63 486-548 2-65 (65)
150 KOG0545 Aryl-hydrocarbon recep 97.8 0.00022 4.7E-09 72.1 12.4 102 442-544 180-294 (329)
151 KOG0551 Hsp90 co-chaperone CNS 97.8 6.3E-05 1.4E-09 78.9 7.8 103 131-253 80-182 (390)
152 PF13371 TPR_9: Tetratricopept 97.7 0.00013 2.9E-09 60.4 8.2 67 448-521 3-70 (73)
153 KOG1915 Cell cycle control pro 97.7 0.12 2.5E-06 57.3 39.1 316 183-577 210-536 (677)
154 PRK10803 tol-pal system protei 97.7 0.00035 7.7E-09 73.5 13.0 98 445-546 147-249 (263)
155 PF13525 YfiO: Outer membrane 97.7 0.0015 3.2E-08 66.2 17.1 186 132-333 5-198 (203)
156 PF13371 TPR_9: Tetratricopept 97.7 0.00019 4E-09 59.6 8.3 67 488-554 2-69 (73)
157 KOG0376 Serine-threonine phosp 97.7 5.4E-05 1.2E-09 83.3 6.1 114 443-564 7-121 (476)
158 PF09976 TPR_21: Tetratricopep 97.7 0.0018 4E-08 61.6 15.9 123 446-573 17-143 (145)
159 PF04733 Coatomer_E: Coatomer 97.7 0.0016 3.5E-08 69.6 17.0 119 446-576 108-229 (290)
160 COG5010 TadD Flp pilus assembl 97.7 0.00042 9E-09 71.0 11.6 121 138-299 106-226 (257)
161 PF13512 TPR_18: Tetratricopep 97.6 0.00086 1.9E-08 63.3 12.5 79 443-525 13-92 (142)
162 PF12688 TPR_5: Tetratrico pep 97.6 0.0013 2.8E-08 60.8 13.1 94 442-539 3-100 (120)
163 PF10345 Cohesin_load: Cohesin 97.6 0.29 6.3E-06 58.0 36.3 320 198-538 39-428 (608)
164 PRK02603 photosystem I assembl 97.6 0.0022 4.8E-08 62.9 15.5 101 462-564 18-122 (172)
165 PF14559 TPR_19: Tetratricopep 97.5 0.00026 5.7E-09 57.7 6.9 64 492-555 2-66 (68)
166 KOG2047 mRNA splicing factor [ 97.5 0.23 5.1E-06 56.9 31.5 370 145-562 360-743 (835)
167 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00034 7.3E-09 77.4 8.8 65 443-511 78-142 (453)
168 KOG4642 Chaperone-dependent E3 97.5 0.00026 5.6E-09 71.4 7.2 105 131-259 9-113 (284)
169 KOG4340 Uncharacterized conser 97.5 0.056 1.2E-06 56.5 23.8 153 182-340 46-205 (459)
170 KOG4648 Uncharacterized conser 97.4 0.00026 5.7E-09 74.4 6.9 110 120-253 85-194 (536)
171 KOG1128 Uncharacterized conser 97.4 0.0012 2.7E-08 75.7 12.6 158 135-341 453-615 (777)
172 PRK14720 transcript cleavage f 97.4 0.022 4.8E-07 68.9 23.2 219 274-525 30-268 (906)
173 KOG3617 WD40 and TPR repeat-co 97.4 0.53 1.1E-05 55.4 37.3 200 137-370 762-991 (1416)
174 COG4235 Cytochrome c biogenesi 97.4 0.0016 3.5E-08 68.2 11.6 97 445-546 161-259 (287)
175 KOG1070 rRNA processing protei 97.4 0.057 1.2E-06 66.3 25.6 238 198-527 1442-1683(1710)
176 KOG2053 Mitochondrial inherita 97.3 0.67 1.5E-05 55.2 33.6 138 191-362 20-159 (932)
177 COG4783 Putative Zn-dependent 97.3 0.012 2.6E-07 65.3 17.4 91 446-543 346-437 (484)
178 KOG3617 WD40 and TPR repeat-co 97.3 0.098 2.1E-06 61.1 25.0 227 449-728 809-1051(1416)
179 COG1729 Uncharacterized protei 97.2 0.0037 8.1E-08 64.8 12.3 102 443-548 144-249 (262)
180 PRK10153 DNA-binding transcrip 97.2 0.0042 9E-08 71.7 13.9 138 185-346 344-487 (517)
181 COG4783 Putative Zn-dependent 97.2 0.008 1.7E-07 66.6 15.2 126 444-576 310-436 (484)
182 KOG3060 Uncharacterized conser 97.1 0.0086 1.9E-07 61.2 13.5 157 141-342 61-220 (289)
183 PF00515 TPR_1: Tetratricopept 97.1 0.0011 2.5E-08 46.3 4.7 33 481-513 1-33 (34)
184 PRK10803 tol-pal system protei 97.1 0.015 3.1E-07 61.4 15.1 101 481-581 142-250 (263)
185 KOG3081 Vesicle coat complex C 97.0 0.16 3.4E-06 52.6 21.6 124 446-581 114-240 (299)
186 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0023 5.1E-08 70.9 9.2 67 477-543 71-141 (453)
187 PF10300 DUF3808: Protein of u 97.0 0.32 6.9E-06 55.7 26.8 87 441-530 268-356 (468)
188 KOG3081 Vesicle coat complex C 97.0 0.11 2.4E-06 53.7 20.1 136 189-340 17-164 (299)
189 COG4105 ComL DNA uptake lipopr 97.0 0.24 5.1E-06 51.3 22.3 190 222-505 35-228 (254)
190 COG4235 Cytochrome c biogenesi 96.9 0.032 6.9E-07 58.7 16.2 113 462-581 144-260 (287)
191 PF12688 TPR_5: Tetratrico pep 96.9 0.013 2.9E-07 54.0 12.0 102 222-341 2-103 (120)
192 PRK10153 DNA-binding transcrip 96.9 0.017 3.7E-07 66.6 15.4 96 455-556 399-494 (517)
193 PRK15331 chaperone protein Sic 96.9 0.0079 1.7E-07 58.1 10.1 98 221-342 37-134 (165)
194 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.032 6.9E-07 62.0 16.2 115 451-575 180-295 (395)
195 KOG4555 TPR repeat-containing 96.8 0.013 2.8E-07 54.2 10.7 93 446-545 49-146 (175)
196 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.012 2.6E-07 65.3 12.9 88 187-301 207-294 (395)
197 PF07719 TPR_2: Tetratricopept 96.8 0.0025 5.3E-08 44.3 4.9 32 481-512 1-32 (34)
198 KOG3616 Selective LIM binding 96.8 0.62 1.4E-05 54.0 25.7 82 479-568 763-844 (1636)
199 COG4105 ComL DNA uptake lipopr 96.7 0.17 3.7E-06 52.4 19.1 201 128-346 30-237 (254)
200 PRK11906 transcriptional regul 96.7 0.033 7.2E-07 62.0 14.9 164 181-369 256-430 (458)
201 KOG4555 TPR repeat-containing 96.6 0.091 2E-06 48.7 14.2 109 125-253 36-144 (175)
202 KOG1586 Protein required for f 96.6 0.59 1.3E-05 47.6 21.2 99 446-545 119-226 (288)
203 PRK11906 transcriptional regul 96.5 0.23 5E-06 55.5 19.8 89 443-539 341-432 (458)
204 KOG1585 Protein required for f 96.5 0.1 2.3E-06 53.3 15.3 185 129-340 28-217 (308)
205 PF03704 BTAD: Bacterial trans 96.4 0.072 1.6E-06 50.4 13.2 99 446-544 12-126 (146)
206 KOG1585 Protein required for f 96.3 0.45 9.7E-06 48.8 18.7 100 446-546 116-222 (308)
207 KOG2471 TPR repeat-containing 96.3 0.025 5.3E-07 62.5 10.4 87 440-526 282-381 (696)
208 COG2909 MalT ATP-dependent tra 96.3 3.8 8.3E-05 49.1 28.6 158 132-304 347-526 (894)
209 COG4785 NlpI Lipoprotein NlpI, 96.2 0.66 1.4E-05 46.8 19.2 99 219-341 63-161 (297)
210 KOG1941 Acetylcholine receptor 96.1 0.046 9.9E-07 58.5 10.9 148 134-303 124-274 (518)
211 KOG1308 Hsp70-interacting prot 96.0 0.0034 7.4E-08 66.6 2.4 96 446-549 120-216 (377)
212 PF13181 TPR_8: Tetratricopept 96.0 0.01 2.2E-07 41.3 4.0 32 481-512 1-32 (34)
213 KOG0545 Aryl-hydrocarbon recep 96.0 0.1 2.2E-06 53.3 12.3 118 126-253 172-293 (329)
214 KOG1070 rRNA processing protei 96.0 1.6 3.4E-05 54.5 24.1 126 445-577 1535-1663(1710)
215 KOG1915 Cell cycle control pro 95.9 3.8 8.2E-05 45.9 44.9 374 144-576 85-499 (677)
216 KOG1586 Protein required for f 95.8 0.32 7E-06 49.5 15.0 150 130-303 32-182 (288)
217 PF13428 TPR_14: Tetratricopep 95.8 0.023 5.1E-07 42.3 5.3 40 483-522 3-43 (44)
218 PF07719 TPR_2: Tetratricopept 95.8 0.018 4E-07 39.8 4.4 31 443-473 4-34 (34)
219 COG4700 Uncharacterized protei 95.7 0.66 1.4E-05 45.8 16.0 128 194-350 70-197 (251)
220 KOG3616 Selective LIM binding 95.6 6.4 0.00014 46.1 27.0 33 482-514 996-1029(1636)
221 PF13512 TPR_18: Tetratricopep 95.6 0.37 8E-06 45.7 13.8 119 481-605 10-132 (142)
222 KOG2041 WD40 repeat protein [G 95.6 6.6 0.00014 45.9 27.7 53 277-337 694-758 (1189)
223 COG5159 RPN6 26S proteasome re 95.3 4.1 8.9E-05 42.8 21.1 249 187-505 10-270 (421)
224 PF00515 TPR_1: Tetratricopept 95.3 0.037 8E-07 38.5 4.5 30 221-253 1-30 (34)
225 COG1729 Uncharacterized protei 95.2 0.2 4.3E-06 52.2 11.7 107 223-347 143-249 (262)
226 PF13281 DUF4071: Domain of un 95.2 1.9 4E-05 47.6 19.5 64 277-340 143-209 (374)
227 PF03704 BTAD: Bacterial trans 95.1 0.5 1.1E-05 44.6 13.4 104 180-303 6-124 (146)
228 KOG2796 Uncharacterized conser 94.8 2.6 5.6E-05 43.9 17.9 195 138-357 128-333 (366)
229 PF09986 DUF2225: Uncharacteri 94.8 0.27 5.8E-06 50.2 11.2 105 449-554 86-207 (214)
230 KOG2796 Uncharacterized conser 94.7 5.9 0.00013 41.3 20.2 126 445-576 182-314 (366)
231 KOG0376 Serine-threonine phosp 94.7 0.015 3.2E-07 64.5 1.9 98 132-253 4-101 (476)
232 PF13431 TPR_17: Tetratricopep 94.6 0.041 8.9E-07 38.8 3.3 32 504-535 2-34 (34)
233 PF15015 NYD-SP12_N: Spermatog 94.6 0.11 2.4E-06 56.6 8.0 97 438-535 175-283 (569)
234 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.12 2.7E-06 40.3 6.2 40 482-521 2-42 (53)
235 COG4700 Uncharacterized protei 94.5 1.3 2.8E-05 43.8 14.4 115 446-568 95-213 (251)
236 COG4785 NlpI Lipoprotein NlpI, 94.5 0.18 3.9E-06 50.8 8.5 100 442-548 67-167 (297)
237 COG3898 Uncharacterized membra 94.3 10 0.00022 41.7 32.0 304 130-544 82-393 (531)
238 PF13428 TPR_14: Tetratricopep 94.1 0.11 2.3E-06 38.7 4.8 39 182-220 3-41 (44)
239 COG0457 NrfG FOG: TPR repeat [ 93.7 6.4 0.00014 37.3 27.9 230 193-545 36-267 (291)
240 PF13176 TPR_7: Tetratricopept 93.7 0.084 1.8E-06 37.5 3.4 28 443-470 2-29 (36)
241 COG3898 Uncharacterized membra 93.7 13 0.00029 40.8 28.5 292 187-576 91-391 (531)
242 KOG0546 HSP90 co-chaperone CPR 93.6 0.098 2.1E-06 56.1 5.2 105 445-549 227-344 (372)
243 PF13431 TPR_17: Tetratricopep 93.6 0.068 1.5E-06 37.6 2.7 34 462-502 1-34 (34)
244 PF13176 TPR_7: Tetratricopept 93.4 0.14 3E-06 36.4 4.2 27 484-510 2-28 (36)
245 PRK10941 hypothetical protein; 93.4 1.3 2.9E-05 46.7 13.3 80 478-557 178-258 (269)
246 PF12968 DUF3856: Domain of Un 93.4 3.5 7.7E-05 37.8 13.8 121 132-261 9-137 (144)
247 PF10300 DUF3808: Protein of u 93.3 0.57 1.2E-05 53.6 11.3 110 193-329 246-356 (468)
248 COG2976 Uncharacterized protei 93.2 2.7 5.8E-05 41.9 14.0 98 223-342 91-188 (207)
249 KOG0985 Vesicle coat protein c 93.2 27 0.00058 42.9 27.5 297 66-508 941-1247(1666)
250 KOG4507 Uncharacterized conser 93.0 0.3 6.4E-06 55.4 7.9 108 184-322 610-721 (886)
251 COG0457 NrfG FOG: TPR repeat [ 93.0 8.4 0.00018 36.5 20.7 125 445-576 100-230 (291)
252 KOG2300 Uncharacterized conser 93.0 19 0.00042 40.6 34.1 292 182-537 214-550 (629)
253 PF04184 ST7: ST7 protein; In 92.9 2 4.4E-05 48.4 14.0 138 187-338 175-320 (539)
254 PF02259 FAT: FAT domain; Int 92.8 7.4 0.00016 42.1 18.8 129 102-253 126-287 (352)
255 KOG2471 TPR repeat-containing 92.8 2.1 4.4E-05 48.0 13.7 257 441-714 101-399 (696)
256 PF10602 RPN7: 26S proteasome 92.7 1.3 2.8E-05 43.8 11.3 105 217-341 32-141 (177)
257 PF09986 DUF2225: Uncharacteri 92.3 2 4.3E-05 43.9 12.4 104 194-304 91-194 (214)
258 KOG1310 WD40 repeat protein [G 92.1 0.47 1E-05 53.3 7.9 94 446-546 380-477 (758)
259 smart00028 TPR Tetratricopepti 92.0 0.22 4.7E-06 32.4 3.5 31 482-512 2-32 (34)
260 COG2976 Uncharacterized protei 91.9 1.2 2.6E-05 44.3 9.8 96 446-545 95-190 (207)
261 KOG1463 26S proteasome regulat 91.9 21 0.00046 38.6 21.3 284 184-538 8-311 (411)
262 PF10602 RPN7: 26S proteasome 91.7 1.4 3.1E-05 43.5 10.3 103 135-252 39-141 (177)
263 PF13174 TPR_6: Tetratricopept 91.7 0.27 5.9E-06 33.4 3.7 30 483-512 2-31 (33)
264 PF13181 TPR_8: Tetratricopept 91.5 0.4 8.8E-06 33.0 4.5 30 221-253 1-30 (34)
265 PF12968 DUF3856: Domain of Un 91.3 4 8.7E-05 37.5 11.5 114 218-339 4-126 (144)
266 KOG2047 mRNA splicing factor [ 91.2 36 0.00078 39.9 39.3 258 230-545 356-617 (835)
267 KOG2300 Uncharacterized conser 91.0 32 0.0007 38.9 36.3 135 442-576 325-473 (629)
268 KOG1308 Hsp70-interacting prot 90.8 0.14 3E-06 54.7 2.2 101 129-253 111-211 (377)
269 PF06552 TOM20_plant: Plant sp 90.7 1.2 2.6E-05 43.8 8.4 52 454-512 49-111 (186)
270 smart00028 TPR Tetratricopepti 90.6 0.42 9.1E-06 30.9 3.8 30 443-472 4-33 (34)
271 PF13374 TPR_10: Tetratricopep 90.3 0.57 1.2E-05 33.6 4.5 30 481-510 2-31 (42)
272 PF13374 TPR_10: Tetratricopep 89.6 0.73 1.6E-05 33.0 4.7 34 221-257 2-35 (42)
273 PF13174 TPR_6: Tetratricopept 88.9 0.47 1E-05 32.2 3.0 30 443-472 3-32 (33)
274 PF06552 TOM20_plant: Plant sp 88.9 2.3 5E-05 41.9 8.7 84 196-303 7-108 (186)
275 COG3118 Thioredoxin domain-con 88.7 4 8.8E-05 43.2 10.9 125 446-581 140-266 (304)
276 COG2909 MalT ATP-dependent tra 88.4 68 0.0015 39.0 24.2 139 144-303 427-567 (894)
277 PF04184 ST7: ST7 protein; In 88.4 15 0.00034 41.6 15.7 59 446-509 265-323 (539)
278 PF02259 FAT: FAT domain; Int 88.4 40 0.00087 36.3 24.5 49 477-525 248-303 (352)
279 PF05843 Suf: Suppressor of fo 88.4 8.9 0.00019 40.7 13.8 134 484-622 4-139 (280)
280 PF10579 Rapsyn_N: Rapsyn N-te 88.1 2 4.3E-05 36.4 6.7 61 220-297 5-65 (80)
281 PF12862 Apc5: Anaphase-promot 88.1 1.7 3.7E-05 38.1 6.8 63 449-511 7-71 (94)
282 KOG1310 WD40 repeat protein [G 88.0 1.4 3.1E-05 49.7 7.3 90 127-230 369-461 (758)
283 KOG1550 Extracellular protein 87.8 63 0.0014 37.9 24.7 254 193-512 262-540 (552)
284 KOG2041 WD40 repeat protein [G 86.9 73 0.0016 37.7 25.9 197 185-466 739-936 (1189)
285 PF12862 Apc5: Anaphase-promot 86.7 3.6 7.7E-05 36.0 8.0 67 188-257 6-74 (94)
286 PF15015 NYD-SP12_N: Spermatog 86.0 4.7 0.0001 44.5 9.8 117 108-224 148-272 (569)
287 KOG2610 Uncharacterized conser 85.2 45 0.00097 36.2 16.2 167 187-381 110-282 (491)
288 PF05843 Suf: Suppressor of fo 84.3 31 0.00066 36.7 15.2 116 454-578 15-137 (280)
289 PF10345 Cohesin_load: Cohesin 83.3 1.1E+02 0.0023 36.5 42.8 363 129-542 56-481 (608)
290 PF04053 Coatomer_WDAD: Coatom 82.8 56 0.0012 37.2 17.3 79 443-540 349-428 (443)
291 COG3118 Thioredoxin domain-con 82.6 69 0.0015 34.2 16.4 126 185-341 139-264 (304)
292 PF11817 Foie-gras_1: Foie gra 82.3 5.3 0.00011 41.7 8.3 68 438-507 176-244 (247)
293 PRK10941 hypothetical protein; 82.2 10 0.00022 40.2 10.4 75 445-526 186-261 (269)
294 KOG4507 Uncharacterized conser 82.1 6.5 0.00014 45.1 9.1 91 452-548 619-710 (886)
295 COG3947 Response regulator con 81.9 4.6 0.0001 42.6 7.3 66 479-544 277-343 (361)
296 KOG4151 Myosin assembly protei 81.1 4.4 9.5E-05 48.0 7.7 101 446-549 59-162 (748)
297 PF14853 Fis1_TPR_C: Fis1 C-te 80.7 3.3 7.1E-05 32.4 4.5 28 277-304 3-30 (53)
298 KOG1839 Uncharacterized protei 80.3 11 0.00024 47.2 11.0 159 128-305 928-1087(1236)
299 COG3629 DnrI DNA-binding trans 79.4 8.5 0.00018 40.8 8.5 67 478-544 150-217 (280)
300 KOG1464 COP9 signalosome, subu 78.0 97 0.0021 32.7 20.3 65 220-303 28-93 (440)
301 PF04781 DUF627: Protein of un 77.1 34 0.00074 31.1 10.4 102 186-303 2-106 (111)
302 COG4976 Predicted methyltransf 76.4 3.7 8.1E-05 41.9 4.6 57 449-512 4-60 (287)
303 PF10579 Rapsyn_N: Rapsyn N-te 75.9 12 0.00025 31.9 6.6 72 129-211 3-74 (80)
304 KOG2053 Mitochondrial inherita 73.8 2.3E+02 0.0049 34.8 33.1 183 139-362 50-241 (932)
305 PF13281 DUF4071: Domain of un 73.4 1E+02 0.0022 34.3 15.1 82 479-560 139-229 (374)
306 PF09613 HrpB1_HrpK: Bacterial 73.2 34 0.00073 33.3 10.0 74 481-554 10-87 (160)
307 COG4455 ImpE Protein of avirul 72.7 76 0.0017 32.6 12.6 60 486-545 6-66 (273)
308 PF08424 NRDE-2: NRDE-2, neces 72.6 30 0.00065 37.5 11.0 117 456-579 47-185 (321)
309 PF14561 TPR_20: Tetratricopep 71.9 50 0.0011 28.7 10.1 44 501-544 8-52 (90)
310 KOG2610 Uncharacterized conser 71.7 27 0.00059 37.8 9.7 89 448-539 145-234 (491)
311 KOG1550 Extracellular protein 71.5 1.1E+02 0.0024 35.9 16.1 150 454-620 226-394 (552)
312 smart00544 MA3 Domain in DAP-5 71.4 59 0.0013 29.1 11.0 57 519-576 7-65 (113)
313 KOG1464 COP9 signalosome, subu 71.0 97 0.0021 32.7 13.3 132 135-289 148-286 (440)
314 PF07079 DUF1347: Protein of u 68.1 1.3E+02 0.0028 34.2 14.2 131 445-577 11-157 (549)
315 PF10516 SHNi-TPR: SHNi-TPR; 67.9 8.7 0.00019 27.9 3.6 30 481-510 1-30 (38)
316 COG2912 Uncharacterized conser 67.0 46 0.001 35.1 10.2 77 478-554 178-255 (269)
317 COG4649 Uncharacterized protei 65.8 1.5E+02 0.0032 29.5 13.5 55 289-346 72-127 (221)
318 KOG4279 Serine/threonine prote 65.0 40 0.00086 40.1 10.0 90 455-545 302-397 (1226)
319 KOG0686 COP9 signalosome, subu 64.9 84 0.0018 35.0 11.9 134 189-339 116-255 (466)
320 PF11817 Foie-gras_1: Foie gra 64.6 67 0.0014 33.4 11.2 88 195-297 153-240 (247)
321 PF10255 Paf67: RNA polymerase 63.8 19 0.00041 40.3 7.1 70 185-258 127-198 (404)
322 KOG1839 Uncharacterized protei 63.5 27 0.00058 44.0 8.9 145 183-340 935-1084(1236)
323 PF10516 SHNi-TPR: SHNi-TPR; 63.3 12 0.00026 27.2 3.6 32 222-256 2-33 (38)
324 PF13041 PPR_2: PPR repeat fam 62.0 28 0.00062 26.1 5.9 40 483-522 5-46 (50)
325 PF07079 DUF1347: Protein of u 61.4 2.9E+02 0.0063 31.5 32.4 26 138-163 12-37 (549)
326 PF07720 TPR_3: Tetratricopept 60.9 15 0.00032 26.3 3.7 26 446-471 7-34 (36)
327 KOG3824 Huntingtin interacting 58.5 15 0.00032 39.2 4.8 62 187-261 123-184 (472)
328 KOG2908 26S proteasome regulat 57.7 77 0.0017 34.5 10.0 92 452-545 87-188 (380)
329 KOG1920 IkappaB kinase complex 56.7 3.2E+02 0.0069 34.7 16.0 25 183-207 680-704 (1265)
330 PF12854 PPR_1: PPR repeat 56.6 18 0.0004 25.1 3.6 25 482-506 8-32 (34)
331 COG3629 DnrI DNA-binding trans 56.5 41 0.00088 35.8 7.7 64 272-339 150-213 (280)
332 TIGR02561 HrpB1_HrpK type III 56.4 1.9E+02 0.0042 27.8 13.0 73 482-554 11-87 (153)
333 KOG0686 COP9 signalosome, subu 56.2 34 0.00073 38.0 7.2 99 137-249 155-254 (466)
334 KOG3364 Membrane protein invol 55.6 59 0.0013 30.8 7.7 72 482-553 33-110 (149)
335 COG4976 Predicted methyltransf 54.8 92 0.002 32.2 9.5 55 491-545 5-60 (287)
336 KOG0890 Protein kinase of the 54.6 7.5E+02 0.016 34.1 28.4 86 456-544 1645-1732(2382)
337 PF07721 TPR_4: Tetratricopept 54.4 17 0.00037 23.6 3.0 23 483-505 3-25 (26)
338 PF10373 EST1_DNA_bind: Est1 D 53.9 24 0.00052 36.8 5.7 45 199-253 1-45 (278)
339 PF04781 DUF627: Protein of un 53.8 1.1E+02 0.0024 27.8 9.0 28 446-473 2-29 (111)
340 TIGR00756 PPR pentatricopeptid 53.8 23 0.0005 23.6 3.8 27 277-303 2-28 (35)
341 PF11207 DUF2989: Protein of u 53.1 65 0.0014 32.5 8.1 56 478-534 138-198 (203)
342 PF13041 PPR_2: PPR repeat fam 52.6 50 0.0011 24.7 5.8 38 512-550 1-38 (50)
343 PF04053 Coatomer_WDAD: Coatom 52.3 37 0.0008 38.7 7.1 103 450-574 271-373 (443)
344 PF01535 PPR: PPR repeat; Int 52.1 22 0.00047 23.2 3.4 26 484-509 3-28 (31)
345 KOG3364 Membrane protein invol 52.0 46 0.001 31.5 6.4 56 454-515 49-106 (149)
346 PF07721 TPR_4: Tetratricopept 51.7 20 0.00044 23.2 3.0 20 316-335 4-23 (26)
347 PRK15180 Vi polysaccharide bio 51.4 1.6E+02 0.0034 33.6 11.3 166 495-674 303-474 (831)
348 TIGR00756 PPR pentatricopeptid 50.7 28 0.0006 23.1 3.8 26 484-509 3-28 (35)
349 TIGR03504 FimV_Cterm FimV C-te 50.5 25 0.00054 26.4 3.6 25 485-509 3-27 (44)
350 KOG4521 Nuclear pore complex, 50.4 1.4E+02 0.0031 37.5 11.7 129 138-291 926-1070(1480)
351 PF04910 Tcf25: Transcriptiona 50.0 3.9E+02 0.0085 29.5 19.9 67 437-509 100-167 (360)
352 PF10952 DUF2753: Protein of u 50.0 87 0.0019 29.1 7.6 86 224-314 4-89 (140)
353 KOG0985 Vesicle coat protein c 49.7 6.4E+02 0.014 31.8 23.9 80 272-362 478-557 (1666)
354 PF14863 Alkyl_sulf_dimr: Alky 49.2 1.4E+02 0.003 28.5 9.3 50 181-230 71-120 (141)
355 KOG2908 26S proteasome regulat 48.7 2.7E+02 0.0059 30.5 12.3 128 107-255 58-185 (380)
356 PF02847 MA3: MA3 domain; Int 48.5 1.2E+02 0.0026 27.0 8.7 77 520-600 8-86 (113)
357 cd02683 MIT_1 MIT: domain cont 48.0 35 0.00075 28.9 4.6 25 445-469 11-35 (77)
358 PF09670 Cas_Cas02710: CRISPR- 47.8 4.4E+02 0.0094 29.4 20.3 65 441-510 132-198 (379)
359 KOG3824 Huntingtin interacting 47.6 62 0.0013 34.7 7.2 67 483-549 118-185 (472)
360 KOG2062 26S proteasome regulat 47.4 4.6E+02 0.0099 31.7 14.7 45 290-339 38-85 (929)
361 cd02682 MIT_AAA_Arch MIT: doma 46.3 34 0.00073 28.9 4.2 35 130-164 4-38 (75)
362 PF13812 PPR_3: Pentatricopept 46.0 38 0.00083 22.6 3.9 27 277-303 3-29 (34)
363 KOG4322 Anaphase-promoting com 45.8 2E+02 0.0042 32.5 10.9 140 179-333 312-459 (482)
364 PF11207 DUF2989: Protein of u 44.8 59 0.0013 32.8 6.4 81 191-294 117-197 (203)
365 KOG0890 Protein kinase of the 44.5 3.7E+02 0.008 36.7 14.7 111 136-256 1667-1787(2382)
366 KOG4279 Serine/threonine prote 44.3 69 0.0015 38.2 7.5 59 192-253 255-316 (1226)
367 PF12854 PPR_1: PPR repeat 44.0 34 0.00075 23.7 3.4 22 519-540 12-33 (34)
368 TIGR03504 FimV_Cterm FimV C-te 43.8 31 0.00067 25.9 3.2 27 517-543 2-28 (44)
369 cd02680 MIT_calpain7_2 MIT: do 42.9 21 0.00045 30.1 2.5 26 445-470 11-36 (75)
370 COG4649 Uncharacterized protei 42.4 3.6E+02 0.0078 26.9 12.2 134 192-349 70-203 (221)
371 KOG1538 Uncharacterized conser 41.4 6.9E+02 0.015 29.9 15.0 28 132-159 645-672 (1081)
372 cd02677 MIT_SNX15 MIT: domain 41.1 1.2E+02 0.0026 25.5 6.8 25 445-469 11-35 (75)
373 cd02680 MIT_calpain7_2 MIT: do 40.4 55 0.0012 27.6 4.6 21 233-256 18-38 (75)
374 PF09670 Cas_Cas02710: CRISPR- 40.2 5.6E+02 0.012 28.5 14.4 70 129-208 128-197 (379)
375 PF01535 PPR: PPR repeat; Int 40.1 39 0.00084 22.0 3.1 27 277-303 2-28 (31)
376 PF04212 MIT: MIT (microtubule 40.0 1.5E+02 0.0033 24.0 7.2 34 131-164 4-37 (69)
377 cd02682 MIT_AAA_Arch MIT: doma 39.6 1.2E+02 0.0025 25.7 6.4 35 220-257 5-39 (75)
378 PF04190 DUF410: Protein of un 39.5 4.7E+02 0.01 27.4 14.2 134 442-577 12-170 (260)
379 cd02679 MIT_spastin MIT: domai 38.6 1.9E+02 0.0041 24.7 7.6 31 224-257 11-41 (79)
380 PF13812 PPR_3: Pentatricopept 38.1 66 0.0014 21.4 4.1 27 483-509 3-29 (34)
381 COG3947 Response regulator con 38.1 1.2E+02 0.0025 32.6 7.4 65 179-253 278-342 (361)
382 PF00244 14-3-3: 14-3-3 protei 38.0 4.7E+02 0.01 27.0 19.9 49 457-509 143-197 (236)
383 PF09613 HrpB1_HrpK: Bacterial 37.7 4E+02 0.0086 26.0 12.4 62 277-342 12-73 (160)
384 PHA02537 M terminase endonucle 37.1 3.2E+02 0.0069 28.3 10.5 99 192-304 95-207 (230)
385 cd02678 MIT_VPS4 MIT: domain c 36.8 71 0.0015 26.6 4.8 26 445-470 11-36 (75)
386 cd02656 MIT MIT: domain contai 36.6 69 0.0015 26.5 4.7 24 446-469 12-35 (75)
387 KOG1497 COP9 signalosome, subu 36.6 6E+02 0.013 27.7 19.2 99 442-541 105-211 (399)
388 COG2912 Uncharacterized conser 36.5 1.2E+02 0.0027 32.0 7.5 75 271-349 177-252 (269)
389 PRK13184 pknD serine/threonine 35.3 4.4E+02 0.0095 33.1 13.1 99 447-550 482-588 (932)
390 cd02684 MIT_2 MIT: domain cont 34.7 1E+02 0.0023 25.8 5.5 26 445-470 11-36 (75)
391 TIGR02710 CRISPR-associated pr 34.5 1.4E+02 0.003 33.2 7.9 68 218-300 127-196 (380)
392 KOG3783 Uncharacterized conser 34.1 8.1E+02 0.018 28.5 22.4 79 446-524 455-535 (546)
393 cd02681 MIT_calpain7_1 MIT: do 34.0 93 0.002 26.3 5.0 30 224-256 9-38 (76)
394 PF04049 APC8: Anaphase promot 33.8 3.2E+02 0.007 25.9 9.3 82 240-330 25-120 (142)
395 PF14863 Alkyl_sulf_dimr: Alky 33.8 84 0.0018 29.9 5.3 44 445-488 75-118 (141)
396 PF04910 Tcf25: Transcriptiona 32.7 7.1E+02 0.015 27.5 15.3 95 135-236 43-154 (360)
397 KOG0276 Vesicle coat complex C 32.2 1.3E+02 0.0027 35.3 7.1 31 133-163 667-697 (794)
398 PF07219 HemY_N: HemY protein 31.8 1.8E+02 0.0038 26.1 6.9 47 483-529 61-108 (108)
399 PF02184 HAT: HAT (Half-A-TPR) 31.4 88 0.0019 21.9 3.6 24 495-518 1-24 (32)
400 cd02684 MIT_2 MIT: domain cont 31.2 1.8E+02 0.0038 24.4 6.3 22 233-257 18-39 (75)
401 TIGR02710 CRISPR-associated pr 31.1 5.1E+02 0.011 28.9 11.5 66 133-205 131-196 (380)
402 KOG1914 mRNA cleavage and poly 31.1 9.2E+02 0.02 28.3 15.4 118 456-581 309-434 (656)
403 PF04762 IKI3: IKI3 family; I 31.1 8.6E+02 0.019 30.6 14.9 69 282-351 701-770 (928)
404 PF14346 DUF4398: Domain of un 30.4 3.6E+02 0.0079 23.7 8.7 69 115-209 6-74 (103)
405 KOG2114 Vacuolar assembly/sort 30.3 1.1E+03 0.024 29.0 22.0 35 130-164 366-400 (933)
406 PF04212 MIT: MIT (microtubule 30.2 1.6E+02 0.0034 23.9 5.8 31 224-257 8-38 (69)
407 PF12487 DUF3703: Protein of u 29.7 2.6E+02 0.0056 25.6 7.4 55 486-540 14-73 (112)
408 TIGR02561 HrpB1_HrpK type III 29.1 4.2E+02 0.0091 25.6 9.0 63 277-343 12-74 (153)
409 KOG4563 Cell cycle-regulated h 28.9 1.2E+02 0.0026 33.3 6.0 62 180-244 41-103 (400)
410 PF14561 TPR_20: Tetratricopep 28.3 2.8E+02 0.006 24.1 7.3 61 462-529 10-73 (90)
411 cd02679 MIT_spastin MIT: domai 28.1 1.5E+02 0.0033 25.2 5.4 60 479-543 6-68 (79)
412 COG0790 FOG: TPR repeat, SEL1 27.7 3.6E+02 0.0078 28.2 9.7 82 453-543 90-184 (292)
413 PF07720 TPR_3: Tetratricopept 27.6 1.6E+02 0.0035 21.0 4.6 29 484-512 4-34 (36)
414 KOG2561 Adaptor protein NUB1, 27.4 6.5E+02 0.014 28.6 11.2 38 217-257 159-196 (568)
415 PF03745 DUF309: Domain of unk 27.2 3.3E+02 0.0072 21.9 7.9 59 444-503 3-61 (62)
416 KOG0546 HSP90 co-chaperone CPR 27.0 77 0.0017 34.7 4.2 113 222-341 223-337 (372)
417 PRK13184 pknD serine/threonine 26.9 1.4E+03 0.03 28.9 25.1 118 188-327 483-600 (932)
418 PHA02537 M terminase endonucle 26.6 5.9E+02 0.013 26.3 10.4 34 452-486 190-223 (230)
419 KOG2659 LisH motif-containing 26.5 3.9E+02 0.0084 27.6 8.9 89 447-539 33-128 (228)
420 PF07219 HemY_N: HemY protein 26.5 2E+02 0.0044 25.7 6.3 45 519-563 64-108 (108)
421 cd02683 MIT_1 MIT: domain cont 26.3 2.2E+02 0.0048 24.0 6.1 28 227-257 12-39 (77)
422 PF08626 TRAPPC9-Trs120: Trans 25.8 8.2E+02 0.018 31.7 13.9 53 240-303 421-473 (1185)
423 KOG2561 Adaptor protein NUB1, 25.7 5.6E+02 0.012 29.1 10.4 125 125-257 156-300 (568)
424 PF08238 Sel1: Sel1 repeat; I 25.7 1.9E+02 0.0042 19.8 4.9 14 240-253 24-37 (39)
425 PF11663 Toxin_YhaV: Toxin wit 25.5 61 0.0013 30.6 2.7 40 18-57 5-49 (140)
426 PHA02564 V virion protein; Pro 25.5 1.8E+02 0.004 27.6 6.0 53 665-722 87-139 (141)
427 smart00671 SEL1 Sel1-like repe 25.1 1.2E+02 0.0026 20.4 3.7 28 223-253 3-34 (36)
428 cd02681 MIT_calpain7_1 MIT: do 24.8 1.2E+02 0.0026 25.6 4.2 35 130-164 4-38 (76)
429 COG2178 Predicted RNA-binding 24.4 5.2E+02 0.011 26.1 9.0 116 180-304 29-150 (204)
430 KOG0276 Vesicle coat complex C 24.4 3.6E+02 0.0078 31.8 8.9 76 489-568 645-728 (794)
431 PF09797 NatB_MDM20: N-acetylt 23.2 3.6E+02 0.0079 29.6 8.9 46 495-540 197-243 (365)
432 KOG1538 Uncharacterized conser 23.1 1.4E+03 0.03 27.6 20.4 81 447-537 710-796 (1081)
433 PF04010 DUF357: Protein of un 22.5 2E+02 0.0043 24.2 5.0 39 126-164 29-67 (75)
434 PF10373 EST1_DNA_bind: Est1 D 22.0 2.4E+02 0.0052 29.1 6.9 61 459-526 1-62 (278)
435 PF12739 TRAPPC-Trs85: ER-Golg 21.8 4.8E+02 0.011 29.3 9.7 96 445-541 213-327 (414)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 21.7 6.4E+02 0.014 23.2 9.5 27 441-467 99-126 (126)
437 KOG0739 AAA+-type ATPase [Post 21.7 2.4E+02 0.0052 30.5 6.4 25 446-470 16-40 (439)
438 KOG2581 26S proteasome regulat 21.4 1E+03 0.022 27.0 11.2 107 436-545 164-278 (493)
439 PF10255 Paf67: RNA polymerase 21.0 2E+02 0.0043 32.4 6.1 59 485-543 126-193 (404)
440 cd00280 TRFH Telomeric Repeat 20.3 8.4E+02 0.018 24.5 9.5 138 171-323 1-151 (200)
441 KOG1914 mRNA cleavage and poly 20.1 1.4E+03 0.031 26.8 19.7 58 446-510 407-464 (656)
No 1
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-58 Score=500.60 Aligned_cols=595 Identities=13% Similarity=0.019 Sum_probs=471.0
Q ss_pred hhHHHHHHHHHHHHhHHHhhcccccccccCCCCCChhhHHhHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhcc
Q 004720 66 NSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDL 145 (733)
Q Consensus 66 ~~~~~~l~~~a~~LWN~~v~~~~~~~~~~~~~~~~~~~~a~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~ 145 (733)
.+.+.++.+++.++|||.|+. .+ -..++++..+-.++|.+++++.+...++....++|.+.++.|..|++.
T Consensus 5 ~~~d~~~~e~~~~~~~~a~~~-------~~--l~~~~~~~~~~~v~~~l~y~~~~~~ase~~~~dLi~~~~~~~~e~l~~ 75 (872)
T KOG4814|consen 5 KASDKYFNEVFCKCKIFATKL-------LS--IHEALFRTNTNLLRNFKCYISSFKSASEYRFDDLITNTQQHSEKYLQI 75 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HH--HHHHHhcCCcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999 33 225677778899999999999999888999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHh---hccCCChHHHHH--------HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 146 KKYDLASGCFEKATEIVSKLD---ISRISDSDERKL--------LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 146 g~~~~A~~~lekA~e~~~~~~---~~~~~~~~e~~~--------~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
+| .+..||++++.....++ +++..++.+.++ .+.....++.+...+|++. +..+...+.+.....|
T Consensus 76 in--~~~e~f~~~~~~~~~l~~~~~~~~~~~~~Ls~~~l~~a~~~~~~~~~~~~S~~~q~d~~-~s~c~~~~~d~~m~~~ 152 (872)
T KOG4814|consen 76 IN--ENVESFSNEEKTEFKKLTFEFYLVNFQLYLSENDLDTANIYTAKVNITDNSKYMDADLL-IELCRMIYNSTVMLKE 152 (872)
T ss_pred HH--HhHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHhhhhhhhhhcCCchhhhhhhhhHHH-HHHHHhhcchHhHHhh
Confidence 99 99999999998776544 333333322222 4556668899999999999 5555555555555556
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC---cH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG---EY 291 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~---~~ 291 (733)
-....++-+++|+|..+.+..+ |.+.-.|+.+++......+ +....++...+.+.++..|..+| .+
T Consensus 153 ~~~~~~~l~~~n~g~~t~k~~k---y~e~~~~~~~s~~~~~~~k--------~s~~~em~n~v~~~~~~~~~~~~~d~y~ 221 (872)
T KOG4814|consen 153 INNPETQLVDVNIISFLKDVEK---YLELPVENLKSHTDYSNLK--------YSVLIFMANCLVEGHPQASELEQCDHYL 221 (872)
T ss_pred hhChHHHHHHHHHhhhhhhhhh---hhhhHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHhhhhhcccCCcchHH
Confidence 5667788999999999999999 9999999999999854432 22226677789999999999887 46
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHH
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAK 370 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk 370 (733)
+.|...|..+.+. ..-...++.+.++....|..++.+-...+.+...+++..++.+..++.+.+.. ..++-.+.
T Consensus 222 ~~a~n~v~~~~~~-----~~l~~~l~~~~~i~~~~et~~e~l~~~Vm~V~~~~~~~~~~~~i~~l~~~~~~~s~~~~~~~ 296 (872)
T KOG4814|consen 222 SLLQNEYPNKVDP-----FILAINLTKRRNIVNPAETIEEILMRMIMSVDVISNFQAVIASINDLSKMNTKFSIVCLDYL 296 (872)
T ss_pred HHhcchhhhhcch-----hhcCccHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 6777666665442 11223459999999999999988888888777778888888888887776655 33333332
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHhhhHHHHHHHhhcchh----HHHh-hHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDG-VSEAAVKLRAKAVAELVSDERVLALFVGDAA----AKER-IAMHAVLW 444 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp-~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~----~~~~-~~~~~llW 444 (733)
...++.++... ++-. +.+. .-++....++.++|+|+++|..+++ +++. +|+|++||
T Consensus 297 ---------------~i~~~~~~~~~-~~~g~~~~s--r~l~~~~~~L~~dE~I~e~F~~~~t~~~lTkE~~~~iH~iLW 358 (872)
T KOG4814|consen 297 ---------------LINKLNSKNDS-KFLGKAICS--RFLITTQSKLMNDEEIAESFENFSTQMELTKEAISCIHTLLW 358 (872)
T ss_pred ---------------HHHHHhhhccc-chhhhhhhh--HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 11111112211 1100 0111 1123334777889999999985555 6654 69999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
|.+..+|+.++|..|++||.++|.++|.|.++ .+.+|++|+++.||++|.|+|+|+|++.+|++.|| +++++++++++
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~-~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS-DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999999999999999999999999887 58899999999999999999999999999999999 99999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCC-------------Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDF-------------TT-DFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEV 589 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~-------------~~-~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~ 589 (733)
.+.+|+.++|+.++.++.+..+. .| ..|.+..+++..+++.-++.++++.|.. ++.+ ..++.
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~~~n~Q~I~sE~~~~~l~~-~~~~---q~~v~ 513 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLMIFNSQTISSESSSQTLSI-LYTL---QMIVK 513 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHHHHhcchhhhcchHHHHHH-HhHH---HHHHH
Confidence 99999999999999999877643 23 4788889999999999999999999998 5555 56677
Q ss_pred HHHHHHHHHH----HhhcCChh------HHHHHHHHHHHHhhhcccCccCCCc----cccchhhHHHHhhhhhhhhhccc
Q 004720 590 VVLRTIVTIL----TQETGNES------EVLKYMKRAHARTSEIGANCFFGTE----EAGRREQNWLAVMSWNFGTNCGK 655 (733)
Q Consensus 590 ~~lR~li~l~----~~~~~~~~------~~l~~~~~A~~~l~~~~~~~~~~~~----~~~~~E~~Wf~~~awN~a~~~~~ 655 (733)
+...|+++.+ +.+++..+ ..++++++++ + ++||.+ +++.+|++||++||||+||+|.|
T Consensus 514 ~~~~e~L~F~L~~~~~~~~~~~ka~e~~~~~~Cln~~~---~-----~~FGe~~~~~E~~~nE~~WFa~T~WNLav~C~K 585 (872)
T KOG4814|consen 514 VSEEEPLEFFLNYLPTVQKLLQKAVEFLKTVKCLNQLP---P-----DVFGEAIYQQEVAVNEIEWFASTSWNLAVKCLK 585 (872)
T ss_pred HHHHhHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcC---C-----chhhhHHHHHHhhhhHHHHHHHHHHHHHHHhcc
Confidence 7766766664 33443333 3567777776 2 458888 89999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHccccCCc----hhhhHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Q 004720 656 EKKYELCMEFLRLASEFYGIRVDGQ----VEENSITVCKSLILTVSAMIASENQKQIALMNNEVKQALELLD 723 (733)
Q Consensus 656 ~~~~~~~~~f~~la~~~~~l~p~~~----~~~~~~~~c~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (733)
++.++.+++||.||++|+++||.|+ ...+++++| |+|+ +|++||++||+++..+|++-+-|.|.
T Consensus 586 d~~~e~~~EF~~L~~~f~~~ip~D~~~~~~~~I~R~~~--L~~~--~~IaLEk~~K~~~~~~Q~~~~se~L~ 653 (872)
T KOG4814|consen 586 DQSCESISEFPQLCIQFIDLIPVDDFTMYHFTIWRFKA--LILQ--LIIALEKAKKDQHQKDQDIYESEELV 653 (872)
T ss_pred chhHHHHHHHHHHHHHHHccCCcccccchhhHHHHHHH--HHHH--HHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999998 456677777 6666 99999999999999999988777764
No 2
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=99.96 E-value=5.6e-27 Score=248.21 Aligned_cols=262 Identities=21% Similarity=0.221 Sum_probs=204.0
Q ss_pred HHHHccCHHHHHHHHHHHHhhh-hcCchhHHHHHHHHHHHhHHHHhcC-CCCCHHHHHHHHHHHHHHHhc-CCCCcccch
Q 004720 189 TAWEVLEQNLAITLLNRAKCLL-FGLFEHYKSLANQYLTFAKSALSKN-ETNSLNDALKLMNEALELCEK-GLGEARTRE 265 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~-~~~~~~~~~La~~~~~~G~~~~~~~-~~~~~e~A~~~l~~Alel~~~-~~~~~~~~~ 265 (733)
.+|++||++.|.+|++|+..+. ...|+.+++|+++||++|+++++++ + |++|++|+++|++++++ +++...+.
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~---~~~a~~wL~~a~~~l~~~~~~~~~~~- 77 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK---YEEAVKWLQRAYDILEKPGKMDKLSP- 77 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHhhhhccccCC-
Confidence 6899999999999999999998 6699999999999999999999999 8 99999999999999988 44443332
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCc---HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGE---YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~---~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
+..++|.++++.|+++|++++. +++|.++++.+++. .+.+|...+++++++.+.++.++..+.+.+||.+
T Consensus 78 ---~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e----~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 78 ---DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE----YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ---cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh----CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3378999999999999999985 55677777778765 4567888899999999988899999999888877
Q ss_pred cC---CchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCch-H-HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 343 KG---IPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS-A-KAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 343 ~~---~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~-~-~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
.+ .+...+++.+..+.++....+...+.+++. .|+.++ + +.++.++++++....+++.+. ..|++.+.+.
T Consensus 151 ~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~---~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~--~~~i~~l~~~ 225 (278)
T PF08631_consen 151 VDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL---NRFKSSEDQWLEKLVLTRVLLTTQSKDLSS--SEKIESLEEL 225 (278)
T ss_pred cccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH---HHhCCChhHHHHHHHHHHHHHHcCCccccc--hhHHHHHHHH
Confidence 65 555556677777777776666666666554 445555 2 788999999985233222111 1344455444
Q ss_pred hhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 004720 418 VSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSML 468 (733)
Q Consensus 418 ~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~ 468 (733)
.. .+.+.+.++-..++..++|+++||+|..+|++|+|++|++||+.|++
T Consensus 226 ~~--~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 226 LS--IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33 33333333333457899999999999999999999999999999985
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=4e-22 Score=216.93 Aligned_cols=370 Identities=14% Similarity=0.053 Sum_probs=293.1
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
++-+...||.|-+.|+++.|++.|+.|+++-+. +.+.++..|.+++.+|+...|..++..|++++|
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~--------------fida~inla~al~~~~~~~~a~~~~~~alqlnP 181 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK--------------FIDAYINLAAALVTQGDLELAVQCFFEALQLNP 181 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch--------------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence 356677999999999999999999999987542 246777889999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
... -+.-++|.-+...|. .++|...|.+|++. ++. -+-+|.+||.++..+|+.
T Consensus 182 ~l~-------ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~---qp~--------------fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 182 DLY-------CARSDLGNLLKAEGR---LEEAKACYLKAIET---QPC--------------FAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred chh-------hhhcchhHHHHhhcc---cchhHHHHHHHHhh---CCc--------------eeeeehhcchHHhhcchH
Confidence 743 345677888888899 99999999999998 542 133799999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHH
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAK 370 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk 370 (733)
-.|+..|+.+.++ .+..+.+++..+.+|...+.||+|+..+.+.+...|+....+-+++..|++.+. +.|+.+++
T Consensus 235 ~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 235 WLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred HHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 9999999999987 567888889999999999999999999988887677777777788899988887 99999998
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHH-HHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHA-VLWNCASI 449 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~-llW~~g~~ 449 (733)
+.+ +.+|..++++-.-+..+++..+..+.+++.. ..-...|-|+ -+.|.|++
T Consensus 311 ral------------------------~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn---kaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 311 RAL------------------------ELQPNFPDAYNNLANALKDKGSVTEAVDCYN---KALRLCPNHADAMNNLGNI 363 (966)
T ss_pred HHH------------------------hcCCCchHHHhHHHHHHHhccchHHHHHHHH---HHHHhCCccHHHHHHHHHH
Confidence 653 3444444443223333344333233333322 1111122221 34478999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC
Q 004720 450 LFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN 528 (733)
Q Consensus 450 ~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g 528 (733)
+-++|++++|..+|.++|+++| ..|..+.|++..|-+.|++++|+..|++|++++| -....-.+...|...|
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p-------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFP-------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHhccchHHHHHHHHHHhhCh-------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999987 5677899999999999999999999999999999 5566667999999999
Q ss_pred CHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 529 DQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+.+.|++||.+.....+.-.|...--+.+....||.+.|+.+.+..|. +..|
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk-lkPD 488 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK-LKPD 488 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc-cCCC
Confidence 999999999999887543334333334566679999999999999888 4344
No 4
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=2.3e-20 Score=191.90 Aligned_cols=379 Identities=15% Similarity=0.109 Sum_probs=280.8
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+..+++.|+.++..|++..|...|-.|++..|..| -.+..||.+|++.|+-.-|+.+++|.+++.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--------------~aifrRaT~yLAmGksk~al~Dl~rVlelK 102 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--------------QAIFRRATVYLAMGKSKAALQDLSRVLELK 102 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--------------HHHHHHHHHHhhhcCCccchhhHHHHHhcC
Confidence 467789999999999999999999999999987655 234567999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh---hhhhhcHHHHHHHHHHHHhc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET---TELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~---~~~~el~~~~l~~La~~yl~ 287 (733)
|++. .+..+.|..++++|. ++.|..-|.+.++- .+.+....+.. .-..+.+ .++.....+..
T Consensus 103 pDF~-------~ARiQRg~vllK~Ge---le~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~--~l~~ql~s~~~ 167 (504)
T KOG0624|consen 103 PDFM-------AARIQRGVVLLKQGE---LEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHW--VLVQQLKSASG 167 (504)
T ss_pred ccHH-------HHHHHhchhhhhccc---HHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHH--HHHHHHHHHhc
Confidence 9854 247788999999999 99999999998887 54332211111 1112222 45555666788
Q ss_pred cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh-hccCCchHHHHhHHHHHHHhchhhhH
Q 004720 288 KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV-EIKGIPECIWVSAVEAYFQAAGTAGA 366 (733)
Q Consensus 288 ~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l-~~~~~~~~~~ls~~~ly~~~~~~~a~ 366 (733)
.|++.-|+.++..++++. +=+.+..-++.+||..-|++..||-.++..- ...|+++.+| .+..+++..+.
T Consensus 168 ~GD~~~ai~~i~~llEi~----~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd---- 238 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQ----PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGD---- 238 (504)
T ss_pred CCchhhHHHHHHHHHhcC----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhh----
Confidence 899999999999998852 2333444889999999999999999998765 4456777765 33343432222
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAV--KLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLW 444 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l--~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW 444 (733)
....+..++.++ +.+||+..|+ |++.+.+.+.. .
T Consensus 239 -----------------~~~sL~~iRECL--KldpdHK~Cf~~YKklkKv~K~l---------e---------------- 274 (504)
T KOG0624|consen 239 -----------------AENSLKEIRECL--KLDPDHKLCFPFYKKLKKVVKSL---------E---------------- 274 (504)
T ss_pred -----------------HHHHHHHHHHHH--ccCcchhhHHHHHHHHHHHHHHH---------H----------------
Confidence 134455666787 7999999987 66655443321 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
.+....+.++|.+|++-++..|+..|... +-+-..++.++.||..-+++.+|+..|.+++..+| ++.+..-++..
T Consensus 275 -s~e~~ie~~~~t~cle~ge~vlk~ep~~~---~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 275 -SAEQAIEEKHWTECLEAGEKVLKNEPEET---MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred -HHHHHHhhhhHHHHHHHHHHHHhcCCccc---ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 45666789999999999999999998754 34556789999999999999999999999999999 79999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTIL 599 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~ 599 (733)
|+...++|.||..|++.....+++.. ..-+..-|.+...+.. .....++|. ...+ ..-.++..++|.+.+--
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~sn~~-~reGle~Akrlkkqs~-kRDYYKILG-VkRn-AsKqEI~KAYRKlAqkW 422 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNESNTR-AREGLERAKRLKKQSG-KRDYYKILG-VKRN-ASKQEITKAYRKLAQKW 422 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHHHhc-cchHHHHhh-hccc-ccHHHHHHHHHHHHHhc
Confidence 99999999999999999998775443 1222233332111111 133445555 2111 22456889999887664
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=3e-19 Score=210.01 Aligned_cols=367 Identities=12% Similarity=-0.012 Sum_probs=238.0
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
...+......|+.+++.|+|+.|+.+|++|++..|. ..++.+++.++...|++++|+.+++++++
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------------PVYYSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344566778999999999999999999999987541 13577889999999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHH---------------------------hcCCCCc
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELC---------------------------EKGLGEA 261 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~---------------------------~~~~~~~ 261 (733)
++|..++ ++++.|..+...|+ +++|+..|+.+..+- +..+.+.
T Consensus 189 l~p~~~~-------a~~~~a~a~~~lg~---~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~ 258 (615)
T TIGR00990 189 LDPDYSK-------ALNRRANAYDGLGK---YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENL 258 (615)
T ss_pred cCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9987664 47788888888888 898887776554320 1111000
Q ss_pred cc------------------------------ch----------------hhh-------------hhhhcHHHHHHHHH
Q 004720 262 RT------------------------------RE----------------ETT-------------ELKGLKFKTLRFIS 282 (733)
Q Consensus 262 ~~------------------------------~~----------------~~~-------------~~~el~~~~l~~La 282 (733)
.. .. .+. ...+.....+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 259 PSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338 (615)
T ss_pred CCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 00 00 000 00011122455556
Q ss_pred HHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch
Q 004720 283 AIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 283 ~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
.+|...|++++|+..++.+... .+..+..++..+.++...|++++|+..+...+...+....++...+.+|...+.
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l----~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIEL----DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 6666666666666666655553 233444455556666666666666666655553333333444444444444333
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHH
Q 004720 363 TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAV 442 (733)
Q Consensus 363 ~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~l 442 (733)
...|+..+++.+ +..|++...+...+.....+...+..+..+. ...+.......+
T Consensus 415 ---------------------~~~A~~~~~kal--~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~--~al~~~P~~~~~ 469 (615)
T TIGR00990 415 ---------------------FAQAGKDYQKSI--DLDPDFIFSHIQLGVTQYKEGSIASSMATFR--RCKKNFPEAPDV 469 (615)
T ss_pred ---------------------HHHHHHHHHHHH--HcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHhCCCChHH
Confidence 233444444554 4566555555445555544444444444443 111111122334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+++.|..+...|+|++|++.|+.++.+.|.....+.+...++...+.+|...|++++|.+.++++++++| +......+.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la 549 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 5568999999999999999999999998864322233444555555666678999999999999999999 777788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
.++.+.|++++|++.++....+.....+
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999887654333
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=2e-17 Score=199.62 Aligned_cols=201 Identities=12% Similarity=0.079 Sum_probs=136.4
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
-.+..|+.+++.|+++.|...|.+++...|. . .......+.+++.+|+++.|+..+.++.+..|..
T Consensus 24 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 89 (899)
T TIGR02917 24 SLIEAAKSYLQKNKYKAAIIQLKNALQKDPN--------D------AEARFLLGKIYLALGDYAAAEKELRKALSLGYPK 89 (899)
T ss_pred HHHHHHHHHHHcCChHhHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh
Confidence 3567799999999999999999999976431 0 1223334556666666666666666666554432
Q ss_pred ch----------------------------hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 214 FE----------------------------HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 214 ~~----------------------------~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
+. .....+.+++..|..+...|+ +++|..+|+++++. +|.+.
T Consensus 90 ~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~---~~~~~---- 159 (899)
T TIGR02917 90 NQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQ---LELAQKSYEQALAI---DPRSL---- 159 (899)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc---CCCCh----
Confidence 21 112344567778888888888 99999999998887 43221
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
..+..++.++...|++++|+..++.+.+. .+.++..+++++.++...|++++|+..+...+...|.
T Consensus 160 ----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 160 ----------YAKLGLAQLALAENRFDEARALIDEVLTA----DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225 (899)
T ss_pred ----------hhHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 15666788888888888888888777764 3455666777888888888888888888777754454
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGV 372 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~ 372 (733)
....+...+..+...+. +.|...+..+
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 253 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADAL 253 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555666666666555 5555555543
No 7
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.1e-20 Score=195.46 Aligned_cols=393 Identities=14% Similarity=0.102 Sum_probs=279.8
Q ss_pred hHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 004720 106 NLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIA 185 (733)
Q Consensus 106 ~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~ 185 (733)
++-.+++.++.+..+. ..++..-.++..+.+.|+.+++..+|..|+.-|+.|++.+++. ..++..
T Consensus 24 ~~~~~~~e~~~~~~~~-s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~--------------a~yy~n 88 (486)
T KOG0550|consen 24 KVDPTEKETAATSPEY-SFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN--------------ASYYSN 88 (486)
T ss_pred cccchhcchhccCccc-cccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc--------------hhhhch
Confidence 3345556666555333 3456667799999999999999999999999999999998741 257778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
||..++..|+|+.|...+++...+++..++. ....|+++...++ ..+|...|+ .++
T Consensus 89 RAa~~m~~~~~~~a~~dar~~~r~kd~~~k~-------~~r~~~c~~a~~~---~i~A~~~~~------~~~-------- 144 (486)
T KOG0550|consen 89 RAATLMMLGRFEEALGDARQSVRLKDGFSKG-------QLREGQCHLALSD---LIEAEEKLK------SKQ-------- 144 (486)
T ss_pred hHHHHHHHHhHhhcccchhhheecCCCcccc-------ccchhhhhhhhHH---HHHHHHHhh------hhh--------
Confidence 8999999999999999999999999988764 5566777777777 666664444 101
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH---HHHHHHHHhcCChHHHHHHHHHhh-h
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP---VLAMKAWLGLGRYNEAELELRGMV-E 341 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~---~lk~~il~~~g~~deAi~~l~~~l-~ 341 (733)
+| ++.+.+..+.+..+ .....|+.. +++.+|+...|++++|+.+...++ .
T Consensus 145 ------------------~~-------~~anal~~~~~~~~-s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 145 ------------------AY-------KAANALPTLEKLAP-SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred ------------------hh-------HHhhhhhhhhcccc-cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 00 12222222222111 011225433 899999999999999999988888 5
Q ss_pred ccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHhhh
Q 004720 342 IKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAV--KLRAKAVAELVS 419 (733)
Q Consensus 342 ~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l--~~ka~~l~~l~~ 419 (733)
...+.+.++|+....|.....+.+..++.. -+ ..+|++.+.- ....++++
T Consensus 199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~q----------------------al--~ldpdh~~sk~~~~~~k~le---- 250 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYNDNADKAINHFQQ----------------------AL--RLDPDHQKSKSASMMPKKLE---- 250 (486)
T ss_pred ccchhHHHHhcccccccccchHHHHHHHhh----------------------hh--ccChhhhhHHhHhhhHHHHH----
Confidence 555778889999998887777777777763 33 4566553321 11111111
Q ss_pred HHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 420 DERVLALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 420 ~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
-|. .|+..|+.|+|..|.+.|+.+|.++|.+. ..++++|.|+|.+++.+|...
T Consensus 251 -----------------------~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~---~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 251 -----------------------VKKERGNDAFKNGNYRKAYECYTEALNIDPSNK---KTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred -----------------------HHHhhhhhHhhccchhHHHHHHHHhhcCCcccc---chhHHHHHHhHhhhcccCCch
Confidence 122 89999999999999999999999999886 489999999999999999999
Q ss_pred HHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004720 499 RAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF--TTDFLSLAAHEAVACQALSVAVAALSNLL 575 (733)
Q Consensus 499 ~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~--~~~lL~la~~~a~~~~~~~~a~~aL~~Ll 575 (733)
+|+..|++|+.+|| .+...+.++++++..+++++|++++++..+.... ....|.-+ +++++..+. +.-.++|
T Consensus 305 eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A-~~aLkkSkR----kd~ykil 379 (486)
T KOG0550|consen 305 EAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREA-QLALKKSKR----KDWYKIL 379 (486)
T ss_pred hhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH-HHHHHHhhh----hhHHHHh
Confidence 99999999999999 8899999999999999999999999999887643 12234333 444442222 3334455
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHH-Hhh-cCCh---hHHHHHHHHHHHHhhhcc
Q 004720 576 NFYTSGKPMPTKEVVVLRTIVTIL-TQE-TGNE---SEVLKYMKRAHARTSEIG 624 (733)
Q Consensus 576 ~~~~~~~~~~~~~~~~lR~li~l~-~~~-~~~~---~~~l~~~~~A~~~l~~~~ 624 (733)
. .+.... .+++..+.|.+.-.. ++. .++. +..++-.-.|+.++++..
T Consensus 380 G-i~~~as-~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~ 431 (486)
T KOG0550|consen 380 G-ISRNAS-DDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPM 431 (486)
T ss_pred h-hhhhcc-cchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHH
Confidence 4 222211 345778888774443 444 3441 224556677888887753
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=1.2e-17 Score=201.73 Aligned_cols=390 Identities=15% Similarity=0.117 Sum_probs=241.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
..+.++...|++++|+..++++....|.... .++.+|..+...|+ +++|..++++++.. ++.+
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~---~~~A~~~~~~~~~~---~~~~---- 566 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLR-------AILALAGLYLRTGN---EEEAVAWLEKAAEL---NPQE---- 566 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---Cccc----
Confidence 3345555555555555555555555444322 23444444445555 56666666655554 2211
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
...+..++..|...|++++|+..++.+... .+.+|..++..+.++...|++++|+..+..++...+
T Consensus 567 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 567 ----------IEPALALAQYYLGKGQLKKALAILNEAADA----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred ----------hhHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 113445666666666666666666666553 234455556666666666666666666666653333
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERV 423 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v 423 (733)
.....+...+..|...+. +.|...++ +.+ +..|++...+...+..+......+..
T Consensus 633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLK----------------------RAL--ELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHH----------------------HHH--hcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333334444555544433 44444444 443 34444444443333343333333333
Q ss_pred HHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHH
Q 004720 424 LALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEY 503 (733)
Q Consensus 424 ~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~ 503 (733)
.+.+. ........-+..+...|..++..|+|++|+++|+.++...|.+ ....+++.+|.+.|++++|.+.
T Consensus 689 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 689 KKIAK--SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--------QNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HHHHH--HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--------hHHHHHHHHHHHCCCHHHHHHH
Confidence 33322 1111001111223347999999999999999999999887644 3567899999999999999999
Q ss_pred HHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004720 504 ITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGK 582 (733)
Q Consensus 504 ~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~ 582 (733)
++++++.+| ++...+.+..++...|++++|++.++++....+.++..+...+......|+ +.|+..++..++....+
T Consensus 759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~- 836 (899)
T TIGR02917 759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI- 836 (899)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC-
Confidence 999999999 899999999999999999999999999998877777766665677777888 66888888888843322
Q ss_pred CCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHHhhhhhhhhhcccccchhhH
Q 004720 583 PMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELC 662 (733)
Q Consensus 583 ~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~ 662 (733)
+. ++.++..+ ....|+.++.++++++|.+.-+.. ..+-+|+|.-..+.+.++.+
T Consensus 837 --~~----~~~~~~~~-~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 837 --PA----ILDTLGWL-LVEKGEADRALPLLRKAVNIAPEA-------------------AAIRYHLALALLATGRKAEA 890 (899)
T ss_pred --cH----HHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCC-------------------hHHHHHHHHHHHHcCCHHHH
Confidence 22 22233222 233577889999999999742210 12445677667777777777
Q ss_pred HHHHH
Q 004720 663 MEFLR 667 (733)
Q Consensus 663 ~~f~~ 667 (733)
.+.+.
T Consensus 891 ~~~~~ 895 (899)
T TIGR02917 891 RKELD 895 (899)
T ss_pred HHHHH
Confidence 66554
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=9.7e-17 Score=201.05 Aligned_cols=408 Identities=14% Similarity=0.049 Sum_probs=276.9
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchh
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEH 216 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~ 216 (733)
..|..++..|+++.|...|++|+...|. + .+.+...+.++..+|++++|+.++++++.+.|..+..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~--------~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK--------D------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 3488999999999999999999986531 1 2445566888999999999999999999998875432
Q ss_pred H---HHHH----HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 217 Y---KSLA----NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 217 ~---~~La----~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
. ..+. ..+...|..++..|+ +++|+..|++++++ +|.+. .++..||.+|...|
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~---~~eA~~~~~~Al~~---~P~~~--------------~a~~~Lg~~~~~~g 399 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANN---LAQAERLYQQARQV---DNTDS--------------YAVLGLGDVAMARK 399 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCCH--------------HHHHHHHHHHHHCC
Confidence 1 1111 123355888999999 99999999999998 54221 26778899999999
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHH------------------------------------------HHHhcC
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHASLPVLAMK------------------------------------------AWLGLG 327 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~------------------------------------------il~~~g 327 (733)
++++|+.+++.+.+.. +.++......+. ++...|
T Consensus 400 ~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 400 DYAAAERYYQQALRMD----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 9999999999998853 344443332223 333445
Q ss_pred ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHH
Q 004720 328 RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAV 407 (733)
Q Consensus 328 ~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l 407 (733)
++++|+..+.+.+...|....++...+.+|...++ ...|..++++++ +..|+++..+
T Consensus 476 ~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~---------------------~~~A~~~l~~al--~~~P~~~~~~ 532 (1157)
T PRK11447 476 KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ---------------------RSQADALMRRLA--QQKPNDPEQV 532 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---------------------HHHHHHHHHHHH--HcCCCCHHHH
Confidence 56666666655553333333344445555544444 233344444444 3445555444
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcch---hHHHh-----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhh
Q 004720 408 KLRAKAVAELVSDERVLALFVGDA---AAKER-----IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRIL 479 (733)
Q Consensus 408 ~~ka~~l~~l~~~e~v~~~~~g~~---~~~~~-----~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~ 479 (733)
+..+..+.+....+...+.+..-. ..... ..........+..+...|++++|++.++ ..|.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~------- 601 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPP------- 601 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCC-------
Confidence 444433333333333333332100 00000 0001123467899999999999999987 2343
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 004720 480 RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEA 558 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a 558 (733)
...++..++.+|.+.|++++|++.|+++++.+| ++...+.+..++...|++++|+++++.+....+.+++.....+...
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 335678999999999999999999999999999 8999999999999999999999999999887766777655555666
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 004720 559 VACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHA 618 (733)
Q Consensus 559 ~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~ 618 (733)
.+.|+.+.|+..++.+++....+.+.. ....++|-+.++ ....|+.++.+.+|++|..
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~~~~~-~~a~~~~~~a~~-~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQPPSM-ESALVLRDAARF-EAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccCCcch-hhHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh
Confidence 789999999999999998543332211 122333333333 3445788889999999975
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-18 Score=188.66 Aligned_cols=319 Identities=15% Similarity=0.074 Sum_probs=210.6
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCC----------hHHHHH---------HHH-HHHHHHHHHHH
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISD----------SDERKL---------LLD-INIARSRTAWE 192 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~----------~~e~~~---------~l~-~l~~rA~~a~~ 192 (733)
.-++..|-.....|+...|..||..|+.+.|.++-.+++. ++...- .|. ....-+.+...
T Consensus 151 da~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~ 230 (966)
T KOG4626|consen 151 DAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNA 230 (966)
T ss_pred HHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhh
Confidence 3445556666667777888888888887766433111110 000000 011 12233445556
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
+|+..+|++.|.+|..++|.+++ +|+|+|..+...+. |+.|+..|++|+.+ .|+
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~d-------AYiNLGnV~ke~~~---~d~Avs~Y~rAl~l---rpn------------- 284 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLD-------AYINLGNVYKEARI---FDRAVSCYLRALNL---RPN------------- 284 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchH-------HHhhHHHHHHHHhc---chHHHHHHHHHHhc---CCc-------------
Confidence 67777777777777777776554 37777777777777 77777777777666 322
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHh
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls 352 (733)
-+-++-+||.+|.++|..|-|+.+|+.+... .+.+|.++-..+.++...|+.+||...+.+.+..-++-.+.--+
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALEL----QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhc----CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 2335666677777777777777777776664 34566666666666666677777777776666322222222234
Q ss_pred HHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch
Q 004720 353 AVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA 431 (733)
Q Consensus 353 ~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~ 431 (733)
+++.|.+.+. +.|...++ ++ .+.+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~---------------------------------------~a------------l~v~p--- 385 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYL---------------------------------------KA------------LEVFP--- 385 (966)
T ss_pred HHHHHHHhccchHHHHHHH---------------------------------------HH------------HhhCh---
Confidence 5555544433 22222222 11 01010
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
-+...--|.|.++-++|++++|+..|+.++.+.| +.|..+.|++..|-..|+.+.|+..|.+|+.++
T Consensus 386 ------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 386 ------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred ------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 1111222578999999999999999999999965 788999999999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
| ....+-.++.+|...|+..+||+.|++..++.+..||
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9 7777888999999999999999999999999877777
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=5.7e-17 Score=203.15 Aligned_cols=396 Identities=12% Similarity=0.033 Sum_probs=274.4
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHH--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDER--KLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~--~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
.....|..++..|+++.|..+|++|++..+...... ..... ...+..+..++..+...|++++|+..+++++.+.|
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~--~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD--KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh--HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 345678999999999999999999998654210000 00000 00122344568888999999999999999999998
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh-----------------------
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT----------------------- 268 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~----------------------- 268 (733)
..+. +++.+|..+...|+ +++|+.+|++++++ .|.+........
T Consensus 383 ~~~~-------a~~~Lg~~~~~~g~---~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 383 TDSY-------AVLGLGDVAMARKD---YAAAERYYQQALRM---DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred CCHH-------HHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 7653 57788999999999 99999999999998 443321100000
Q ss_pred -----hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc-
Q 004720 269 -----ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI- 342 (733)
Q Consensus 269 -----~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~- 342 (733)
....+....+..++.++...|++++|+.+++.+.+. .+.+|...+..+.++...|++++|+..+++.+..
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 001122345667889999999999999999999986 4677888899999999999999999999998854
Q ss_pred cCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHH
Q 004720 343 KGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDE 421 (733)
Q Consensus 343 ~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e 421 (733)
++.+...+ ..+..+...++ +.|...+.++.. ...+ .....+..+.. . ..+...+..+......+
T Consensus 526 P~~~~~~~-a~al~l~~~~~~~~Al~~l~~l~~----~~~~--~~~~~l~~~l~---~-----~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 526 PNDPEQVY-AYGLYLSGSDRDRAALAHLNTLPR----AQWN--SNIQELAQRLQ---S-----DQVLETANRLRDSGKEA 590 (1157)
T ss_pred CCCHHHHH-HHHHHHHhCCCHHHHHHHHHhCCc----hhcC--hhHHHHHHHHh---h-----hHHHHHHHHHHHCCCHH
Confidence 44444433 33333443333 566666553310 0000 00011111110 0 00112333333333333
Q ss_pred HHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHH
Q 004720 422 RVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQ 501 (733)
Q Consensus 422 ~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~ 501 (733)
..++++..+.. -..+..+.|..+.+.|+|++|++.|+.++...|.+ ...+.+++.+|...|++++|+
T Consensus 591 eA~~~l~~~p~------~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~-------~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 591 EAEALLRQQPP------STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN-------ADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHH
Confidence 34444331111 11123358999999999999999999999988755 357899999999999999999
Q ss_pred HHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004720 502 EYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT------DFLSLAAHEAVACQALSVAVAALSNL 574 (733)
Q Consensus 502 e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~------~lL~la~~~a~~~~~~~~a~~aL~~L 574 (733)
+.++++.+.+| ++..+..+..++...|++++|++.++.+....+.+| .++...+......|+.+.|+..++..
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999 888888899999999999999999999988654333 24445578888999999999888777
Q ss_pred Hh
Q 004720 575 LN 576 (733)
Q Consensus 575 l~ 576 (733)
+.
T Consensus 738 l~ 739 (1157)
T PRK11447 738 MV 739 (1157)
T ss_pred Hh
Confidence 64
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=6.4e-16 Score=181.83 Aligned_cols=370 Identities=15% Similarity=0.039 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+..++..+...|+|+.|+..|++++.+.|. + ..|+++|.+++..|+ +++|+..+++++++ +|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~-------~~~~n~a~~~~~l~~---~~~Ai~~~~~al~l---~p~ 192 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P-------VYYSNRAACHNALGD---WEKVVEDTTAALEL---DPD 192 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h-------HHHHHHHHHHHHhCC---HHHHHHHHHHHHHc---CCC
Confidence 345667788999999999999999999999875 2 248899999999999 99999999999998 543
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcH------------------------
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASL------------------------ 315 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~------------------------ 315 (733)
+ .+++..+|.+|...|+|++|+..+..+.... +.++..
T Consensus 193 ~--------------~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~ 254 (615)
T TIGR00990 193 Y--------------SKALNRRANAYDGLGKYADALLDLTASCIID----GFRNEQSAQAVERLLKKFAESKAKEILETK 254 (615)
T ss_pred C--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 2378889999999999999987766554321 111100
Q ss_pred ------HHHHHHHH------------------------------------HhcCChHHHHHHHHHhhhcc---CCchHHH
Q 004720 316 ------PVLAMKAW------------------------------------LGLGRYNEAELELRGMVEIK---GIPECIW 350 (733)
Q Consensus 316 ------~~lk~~il------------------------------------~~~g~~deAi~~l~~~l~~~---~~~~~~~ 350 (733)
..+.+..+ ...++|++|+..+...+... +.....+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~ 334 (615)
T TIGR00990 255 PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIAL 334 (615)
T ss_pred CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 00000000 00123445555544444211 1111112
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
...+.+|...++ ...|+..+++.+ +..|+....+...+.....+...+..+..+.
T Consensus 335 ~~lg~~~~~~g~---------------------~~eA~~~~~kal--~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~-- 389 (615)
T TIGR00990 335 NLRGTFKCLKGK---------------------HLEALADLSKSI--ELDPRVTQSYIKRASMNLELGDPDKAEEDFD-- 389 (615)
T ss_pred HHHHHHHHHcCC---------------------HHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 222222222222 245555555665 5667666666556655555544444544443
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+..........++.+.|..++..|+|++|+.+|+.++...|.+ ...+.++|.+|.++|++++|+..++++++.
T Consensus 390 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1111111112345568999999999999999999999988754 345789999999999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh----H---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCC
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT----D---FLSLAAHEAVACQALSVAVAALSNLLNFYTSGK 582 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~----~---lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~ 582 (733)
.| ++...+....++...|++++|++++++...+.+... . ++..+.......++.+.|+..++..++. +
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l---~- 538 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII---D- 538 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---C-
Confidence 99 788888899999999999999999999888764321 1 2222222333357888888888888773 2
Q ss_pred CCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 004720 583 PMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTS 621 (733)
Q Consensus 583 ~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~ 621 (733)
|.... ++-.+.++ ....|+.++.+++|++|.+...
T Consensus 539 --p~~~~-a~~~la~~-~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 --PECDI-AVATMAQL-LLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred --CCcHH-HHHHHHHH-HHHccCHHHHHHHHHHHHHHhc
Confidence 22121 11122222 2335778899999999987543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=4e-16 Score=184.21 Aligned_cols=331 Identities=10% Similarity=0.040 Sum_probs=246.4
Q ss_pred hhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHH
Q 004720 139 GVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYK 218 (733)
Q Consensus 139 G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~ 218 (733)
....+..|+++.|...++.++...+. . .+.+...+.+....|+++.|+..++++..+.|..+..
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~--------~------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a-- 112 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKN--------G------RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPED-- 112 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCC--------c------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHH--
Confidence 45667889999999999888876542 1 1333334556668999999999999999999987753
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
++.+|..+...|+ +++|+..|++++.+ .|.+. ..+..++.+|...|++++|+..+
T Consensus 113 -----~~~la~~l~~~g~---~~~Ai~~l~~Al~l---~P~~~--------------~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 113 -----VLLVASVLLKSKQ---YATVADLAEQAWLA---FSGNS--------------QIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred -----HHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCcH--------------HHHHHHHHHHHHCCChHHHHHHH
Confidence 6778888889999 99999999999998 54321 26778899999999999999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
+.+... .+.++..++ .+..+...|++++|+..+..++...+ .........+..+...++
T Consensus 168 ~~~~~~----~P~~~~a~~-~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~--------------- 227 (656)
T PRK15174 168 RTQAQE----VPPRGDMIA-TCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK--------------- 227 (656)
T ss_pred HHHHHh----CCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC---------------
Confidence 877654 234444433 34468888999999999988774432 222222222333333332
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
...+...+++.+ ...|++... +.+.|..+++.|+|+
T Consensus 228 ------~~eA~~~~~~al--~~~p~~~~~------------------------------------~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 228 ------YQEAIQTGESAL--ARGLDGAAL------------------------------------RRSLGLAYYQSGRSR 263 (656)
T ss_pred ------HHHHHHHHHHHH--hcCCCCHHH------------------------------------HHHHHHHHHHcCCch
Confidence 123333333444 344533221 224789999999999
Q ss_pred H----HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHH
Q 004720 458 A----SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEG 532 (733)
Q Consensus 458 ~----A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~ 532 (733)
+ |+.+|+.++...|.+ +.++.+++..+...|++++|+.+++++++++| ++...+.+..++...|++++
T Consensus 264 eA~~~A~~~~~~Al~l~P~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDN-------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 6 899999999988744 46789999999999999999999999999999 88888899999999999999
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 533 AINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 533 Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
|+..++.+....+..+......+......|+.+.|+..++..++..+.+
T Consensus 337 A~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 337 ASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999999998766666544444455567899999999999998854443
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=4.6e-15 Score=175.23 Aligned_cols=294 Identities=12% Similarity=0.061 Sum_probs=233.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
+......|+++.|...+..++...|..+. .++.+|...+..|+ +++|+..|++++.+ +|.+.
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-------~l~~l~~~~l~~g~---~~~A~~~l~~~l~~---~P~~~----- 110 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRD-------LLRRWVISPLASSQ---PDAVLQVVNKLLAV---NVCQP----- 110 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchh-------HHHHHhhhHhhcCC---HHHHHHHHHHHHHh---CCCCh-----
Confidence 45566899999999999999999988764 48889999999999 99999999999998 65332
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
..+..++.+|...|++++|+..++.+.+. .+.++..+...+.++...|++++|+..+..++...+.+
T Consensus 111 ---------~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 111 ---------EDVLLVASVLLKSKQYATVADLAEQAWLA----FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 26888999999999999999999999986 46778888999999999999999999998877444444
Q ss_pred hHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHH
Q 004720 347 ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLAL 426 (733)
Q Consensus 347 ~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~ 426 (733)
...+..... +...++ ...|..++++++ +..|.+...
T Consensus 178 ~~a~~~~~~-l~~~g~---------------------~~eA~~~~~~~l--~~~~~~~~~-------------------- 213 (656)
T PRK15174 178 GDMIATCLS-FLNKSR---------------------LPEDHDLARALL--PFFALERQE-------------------- 213 (656)
T ss_pred HHHHHHHHH-HHHcCC---------------------HHHHHHHHHHHH--hcCCCcchh--------------------
Confidence 444333222 222222 122333333443 222211000
Q ss_pred hhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHH----HHH
Q 004720 427 FVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDR----AQE 502 (733)
Q Consensus 427 ~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~----A~e 502 (733)
.....|..+.+.|+|++|+..|..++...|.+ ..++++++.+|...|++++ |..
T Consensus 214 ---------------~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 214 ---------------SAGLAVDTLCAVGKYQEAIQTGESALARGLDG-------AALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred ---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 00124677889999999999999999887644 4578999999999999996 899
Q ss_pred HHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 503 YITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 503 ~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.|+++++++| ++.....+..++...|++++|+..++.+....+.+++....-+....+.|+.+.|+..++.+++.
T Consensus 272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999 88889999999999999999999999999998888887766677788899999999999988884
No 15
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5.7e-14 Score=154.37 Aligned_cols=420 Identities=13% Similarity=0.111 Sum_probs=258.9
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
-++.++||-+..+++.++ |..|++||..++.....+..+. .=++..|+|+.||++..+.|+|.++|
T Consensus 352 ~iH~iLWn~A~~~F~~~~---Y~~s~~~y~~Sl~~i~~D~~~~-----------~FaK~qR~l~~CYL~L~QLD~A~E~~ 417 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEK---YVVSIRFYKLSLKDIISDNYSD-----------RFAKIQRALQVCYLKLEQLDNAVEVY 417 (872)
T ss_pred HHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHhccchhhhh-----------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999999 9999999999999854432221 12679999999999999999999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC--chH-HH----------HhHHHHH-HHhch--
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI--PEC-IW----------VSAVEAY-FQAAG-- 362 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~--~~~-~~----------ls~~~ly-~~~~~-- 362 (733)
..+++. .+..|...+....+...-|...+|+..+.......+. ++. ++ ++.+..+ ..+.+
T Consensus 418 ~EAE~~----d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~~~n~Q~I 493 (872)
T KOG4814|consen 418 QEAEEV----DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLMIFNSQTI 493 (872)
T ss_pred HHHHhh----ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHHHHhcchh
Confidence 999874 2345556677778888889999999887765422211 111 11 1111111 11111
Q ss_pred --hhhHHHHHHHHHhhhccCCch--HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh-------hcch
Q 004720 363 --TAGAETAKGVFLGLLGRCHVS--AKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF-------VGDA 431 (733)
Q Consensus 363 --~~a~~~lk~~l~~ll~~~~~~--~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~-------~g~~ 431 (733)
+.+.+++-.+ ...+ -..++...-+|+. ..-|+-++.. .|+.. ..+.++|+ +|..
T Consensus 494 ~sE~~~~~l~~~-------~~~q~~v~~~~~e~L~F~L-~~~~~~~~~~-~ka~e------~~~~~~Cln~~~~~~FGe~ 558 (872)
T KOG4814|consen 494 SSESSSQTLSIL-------YTLQMIVKVSEEEPLEFFL-NYLPTVQKLL-QKAVE------FLKTVKCLNQLPPDVFGEA 558 (872)
T ss_pred hhcchHHHHHHH-------hHHHHHHHHHHHhHHHHHH-hhccchhHHH-HHHHH------HHHHHHHHhhcCCchhhhH
Confidence 2223332211 1111 1112222223332 2223333322 22211 22345666 4554
Q ss_pred -----hHH-HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CCCCchhhhhhHHHHHHHHHHH---HhCCCHHH
Q 004720 432 -----AAK-ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY---LPFDVENRILRAKSFRVLCLCY---LGLSLIDR 499 (733)
Q Consensus 432 -----~~~-~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~---~~~~~~~~~~~akl~r~la~cy---l~l~~~~~ 499 (733)
.++ +..|+...-||.|..+.|.+.|+-.-+++..+.+| .|.|+.. .+.--+.|..++.. +.|.+-.+
T Consensus 559 ~~~~E~~~nE~~WFa~T~WNLav~C~Kd~~~e~~~EF~~L~~~f~~~ip~D~~~-~~~~~I~R~~~L~~~~~IaLEk~~K 637 (872)
T KOG4814|consen 559 IYQQEVAVNEIEWFASTSWNLAVKCLKDQSCESISEFPQLCIQFIDLIPVDDFT-MYHFTIWRFKALILQLIIALEKAKK 637 (872)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHccCCccccc-chhhHHHHHHHHHHHHHHHHHhhhh
Confidence 222 78999999999999999999999999999999864 4655421 23344455544432 23322222
Q ss_pred HHHHHH------HHH----hh--------CC------C--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-hHHHH
Q 004720 500 AQEYIT------EAE----KL--------EP------N--IASAFLKFKIYLQKNDQEGAINQILAMTICLDFT-TDFLS 552 (733)
Q Consensus 500 A~e~~~------~A~----~l--------dp------~--~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~-~~lL~ 552 (733)
+.-..+ +++ .+ +| + ....++.|.|+.+.++.-......+.+....-.. ..+..
T Consensus 638 ~~~~~~Q~~~~se~L~~s~~~~D~~~~~k~~~~~~~~~~~~~~~L~a~~Ih~~LN~~~~q~~i~~~~~~~~~~~~~~~~~ 717 (872)
T KOG4814|consen 638 DQHQKDQDIYESEELVNSINVMDKSSEFKDGSSLEDRNTLHECFLEALTIHLELNLMMDQTRILDILKKTELYQDSRVDA 717 (872)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhHHhhCCCCccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHccchhhhhhhHHH
Confidence 221111 121 11 22 1 1223457999999999866666666665442222 23445
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhhhcCC-CCCchhHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHhhhcccC
Q 004720 553 LAAHEAVA--CQALSVAVAALSNLLNFYTSG-KPMPTKEVVVLRTIVTILTQETGNE---SEVLKYMKRAHARTSEIGAN 626 (733)
Q Consensus 553 la~~~a~~--~~~~~~a~~aL~~Ll~~~~~~-~~~~~~~~~~lR~li~l~~~~~~~~---~~~l~~~~~A~~~l~~~~~~ 626 (733)
++ -+|.+ ..+..++.+||..-+-++-.+ .|...+...+.|.||-+-+-..|+. ..+|+.+.+++.++...-
T Consensus 718 l~-I~As~~P~~~P~~~l~AL~e~Ll~~~~~aspe~~~~~lc~~~LI~l~~V~~G~~~vEl~iL~~v~~~~~i~~s~~-- 794 (872)
T KOG4814|consen 718 LL-IDASSNPEDLPKGVLIALLETLLKRNMGASPEVKERELCSWLLILLENVINGNHEVELRILDRVLKILNINQSSL-- 794 (872)
T ss_pred HH-HHHhcChhhcchhHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHhh--
Confidence 54 34455 445677888886544434333 3445556666777765543223433 237888888887765542
Q ss_pred ccCCCccccchhhHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHcccc
Q 004720 627 CFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRV 677 (733)
Q Consensus 627 ~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p 677 (733)
...+++|..|++|++.++||+||-...-.+++.+.-|..++.+|.+...
T Consensus 795 --~~t~~YP~~E~~WLa~~~WN~gvL~~~~~~~~~A~KWc~~~L~fan~vT 843 (872)
T KOG4814|consen 795 --QDTDGYPQTELEWLATYCWNIGVLYIIKDNKSNAIKWCKHSLGFANMVT 843 (872)
T ss_pred --hhcCCCcHHHHHHHHHHHhhhheeeeeccchhhHHHHHHHHHHHHhhhc
Confidence 1345899999999999999999999999999999999999999988753
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=9.4e-15 Score=161.65 Aligned_cols=305 Identities=12% Similarity=0.064 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.....++..+...|+++.|+..+.++....|.++ .+++.+|..+...|+ +++|+..+++++.. +...
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~---~~~A~~~~~~~l~~---~~~~ 102 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV-------ELHLALGNLFRRRGE---VDRAIRIHQNLLSR---PDLT 102 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH-------HHHHHHHHHHHHcCc---HHHHHHHHHHHhcC---CCCC
Confidence 3444556678899999999999999999988654 357788999999999 99999999987763 2111
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
...+..++..|+.+|...|++++|+.+++.+.+. .+.++.+....+.++...|++++|+..+..++
T Consensus 103 ----------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 103 ----------REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred ----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 1123457889999999999999999999999874 23445566788899999999999999998887
Q ss_pred hccCCchH-----HHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 341 EIKGIPEC-----IWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 341 ~~~~~~~~-----~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
...+.+.. ++...+..|...+. ...+..++++.+ +..|++..
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~---------------------~~~A~~~~~~al--~~~p~~~~---------- 215 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGD---------------------LDAARALLKKAL--AADPQCVR---------- 215 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCC---------------------HHHHHHHHHHHH--hHCcCCHH----------
Confidence 54332211 12223333332222 123333333333 22232210
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
.....|..+.+.|++++|+++|+.++...|. +....+..++.+|...|
T Consensus 216 --------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 216 --------------------------ASILLGDLALAQGDYAAAIEALERVEEQDPE------YLSEVLPKLMECYQALG 263 (389)
T ss_pred --------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHChh------hHHHHHHHHHHHHHHcC
Confidence 1223788899999999999999999877553 23456788899999999
Q ss_pred CHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHH-HH-cCCHHHHHHHHHH
Q 004720 496 LIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEA-VA-CQALSVAVAALSN 573 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a-~~-~~~~~~a~~aL~~ 573 (733)
++++|.+.++++.+.+|+......+..++...|++++|+..++.+....+.++.+..+..... .. .|....++..++.
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 999999999999999995444577899999999999999999988877555555554432222 11 3466667767776
Q ss_pred HHhh
Q 004720 574 LLNF 577 (733)
Q Consensus 574 Ll~~ 577 (733)
++..
T Consensus 344 ~~~~ 347 (389)
T PRK11788 344 LVGE 347 (389)
T ss_pred HHHH
Confidence 6653
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.9e-13 Score=154.60 Aligned_cols=488 Identities=16% Similarity=0.107 Sum_probs=282.9
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
-++.-+..|+|..|...|.+|....|..- + +.-+...-+.|..|+.+.|+--++|+.+++|...
T Consensus 170 kA~i~ynkkdY~~al~yyk~al~inp~~~-----a--------D~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v--- 233 (1018)
T KOG2002|consen 170 KARIAYNKKDYRGALKYYKKALRINPACK-----A--------DVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV--- 233 (1018)
T ss_pred HHHHHhccccHHHHHHHHHHHHhcCcccC-----C--------CccchhhhHHHhccchhhHHHHHHHHHhcChhhH---
Confidence 34455678899999999999887766311 1 1122235688999999999999999999999533
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
.++.-+|..-+...+.+++..++..+++|+.+ ++.++- ++..|++-|+..|+|++|+..
T Consensus 234 ----~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~---n~~nP~--------------~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 234 ----SALVALGEVDLNFNDSDSYKKGVQLLQRAYKE---NNENPV--------------ALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred ----HHHHHHHHHHHHccchHHHHHHHHHHHHHHhh---cCCCcH--------------HHHHHHHHHhhcccHHHHHHH
Confidence 34555555555555555599999999999998 432221 444555555555555555555
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCchHHHHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK-GIPECIWVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~-~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
..-+.+.. .-+..-..+.|+.++.+...|+|++|..++...+... ++..--.+.++..|+..+. .-+..++.+++..
T Consensus 293 a~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 293 AEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 44443311 0011112233555555555566665555555555222 2212223445555555444 2233333322221
Q ss_pred ---------hhccCCch-------HHHHHHHHHHhhcCCCCCcchHHHHHHHHHH------HHhhhHHHHHHHhh--cch
Q 004720 376 ---------LLGRCHVS-------AKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV------AELVSDERVLALFV--GDA 431 (733)
Q Consensus 376 ---------ll~~~~~~-------~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l------~~l~~~e~v~~~~~--g~~ 431 (733)
++|..... .+.+..++.+++ +..|++...|...+.++ +.+.....+.+++. +++
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~--~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL--EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ 449 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH--hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC
Confidence 12221111 244455555555 44565666554443333 22223333433333 223
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CC---CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY-LP---FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~-~~---~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
.+. -++-|.|.-+|..|++..|.+.|..|+.. .+ .+++. ...-.+.+|+|.|+..+++++.|.+.|...
T Consensus 450 ip~------E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~-~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 450 IPP------EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK-STNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred CCH------HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc-cchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 222 23446899999999999999999999976 22 22211 233457899999999999999999999999
Q ss_pred HhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCch
Q 004720 508 EKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPT 586 (733)
Q Consensus 508 ~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~ 586 (733)
++..| .+.+++.+...+..+++..+|...++.+......+|+..++-...-.+......+.+=++.+++..+.. +++=
T Consensus 523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~D~Y 601 (1018)
T KOG2002|consen 523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-TDAY 601 (1018)
T ss_pred HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-Cchh
Confidence 99999 566666666788889999999999999999999999988887766666556666666666666643332 1121
Q ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh---cccCcc---CCCccccc------hhhHHHHhh---------
Q 004720 587 KEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSE---IGANCF---FGTEEAGR------REQNWLAVM--------- 645 (733)
Q Consensus 587 ~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~---~~~~~~---~~~~~~~~------~E~~Wf~~~--------- 645 (733)
..+.+==..|+-+.+...+...-.+++.+|++...+ ..+.+. .|-|++-. .-..=|+++
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 121211111111211112223334455555554322 111111 11121111 112223332
Q ss_pred hh-hhhhhcccccchhhHHHHHHHHHHHH
Q 004720 646 SW-NFGTNCGKEKKYELCMEFLRLASEFY 673 (733)
Q Consensus 646 aw-N~a~~~~~~~~~~~~~~f~~la~~~~ 673 (733)
.| |+|=-+.-.++|..+.+.|+.|..-+
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34 77766666677888889898888743
No 18
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.1e-14 Score=158.81 Aligned_cols=341 Identities=13% Similarity=0.090 Sum_probs=208.1
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
.....-||..+..|+|+.|+.+|+.|+.+.|.- --++++|.+++..+|+|++|+.+..++.++.|.
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n--------------hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~ 68 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN--------------HVLYSNRSAAYASLGSYEKALKDATKTRRLNPD 68 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCc--------------cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 345678999999999999999999999987630 025567889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh-------------------------
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET------------------------- 267 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~------------------------- 267 (733)
-|++ |...|..++..|+ |++|+.-|++.++. ++.+...-.|.
T Consensus 69 w~kg-------y~r~Gaa~~~lg~---~~eA~~ay~~GL~~---d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~ 135 (539)
T KOG0548|consen 69 WAKG-------YSRKGAALFGLGD---YEEAILAYSEGLEK---DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN 135 (539)
T ss_pred hhhH-------HHHhHHHHHhccc---HHHHHHHHHHHhhc---CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc
Confidence 7765 8888999999999 99999999999886 32211000000
Q ss_pred ----------------------------------------------------------------h------------hhh
Q 004720 268 ----------------------------------------------------------------T------------ELK 271 (733)
Q Consensus 268 ----------------------------------------------------------------~------------~~~ 271 (733)
| +..
T Consensus 136 ~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ 215 (539)
T KOG0548|consen 136 LPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNT 215 (539)
T ss_pred ChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhH
Confidence 0 000
Q ss_pred -----hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCCh-------HHHHHHHHHh
Q 004720 272 -----GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRY-------NEAELELRGM 339 (733)
Q Consensus 272 -----el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~-------deAi~~l~~~ 339 (733)
...+.-.-.|++......+|+.|+.+++.+..+ . .+..-+....-+++..|.+ ++|++..+..
T Consensus 216 ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el----~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 216 EERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL----A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH----h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 001223334444444444555555555555442 1 1111112222222222222 2222222111
Q ss_pred hhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhh
Q 004720 340 VEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVS 419 (733)
Q Consensus 340 l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~ 419 (733)
-.....-.....++++.|...+. ...++..+.+.+.....|+ .+..+..
T Consensus 291 rad~klIak~~~r~g~a~~k~~~---------------------~~~ai~~~~kaLte~Rt~~----------~ls~lk~ 339 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKRED---------------------YEGAIKYYQKALTEHRTPD----------LLSKLKE 339 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHh---------------------HHHHHHHHHHHhhhhcCHH----------HHHHHHH
Confidence 10000000000111222222211 1222222222221011121 1122222
Q ss_pred HHHHHHHhh-----cchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC
Q 004720 420 DERVLALFV-----GDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL 494 (733)
Q Consensus 420 ~e~v~~~~~-----g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l 494 (733)
.|+++..-. ++..+ .--..+|+.+|+.|||..|+..|++++...|.| +++|.|+|.||++|
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A-------~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-------a~lYsNRAac~~kL 405 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKA-------EEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-------ARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHhhChhHH-------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-------hHHHHHHHHHHHHH
Confidence 222222211 22222 222348999999999999999999999987644 68999999999999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
+++..|..+++.++++|| .+..++....++....++++|+++|.......+.+..+
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 999999999999999999 67777788999999999999999999888876544443
No 19
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.9e-14 Score=149.93 Aligned_cols=205 Identities=13% Similarity=0.070 Sum_probs=142.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH-H
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV-E 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~-~ 355 (733)
.+..++..|++.++-++-++.++.+..+ ++.+|+++|-++.++.-+++|++|+.++...++..|....-++-.. -
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA 437 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 4777899999999999999999999987 6899999999999999999999999999998855443332233322 2
Q ss_pred HHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 356 AYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 356 ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
+|..+.-+.+..++. . +..+| ...| ++.
T Consensus 438 ~Yr~~k~~~~m~~Fe---------------e---~kkkF---P~~~---Evy---------------------------- 465 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFE---------------E---AKKKF---PNCP---EVY---------------------------- 465 (606)
T ss_pred HHHHHHHHHHHHHHH---------------H---HHHhC---CCCc---hHH----------------------------
Confidence 232221122222221 1 11133 1222 111
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
+ -.|.++--+++|+.|++.|..++++.|....-+.+.+-+-.+-.....=.++++.|.+.+++|+++|| .-
T Consensus 466 -----~---~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 466 -----N---LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred -----H---HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH
Confidence 0 15677778999999999999999988862111111122222222222234899999999999999999 77
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
...-.+..+-++.|+.++|++.+++-..+.-
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999988776654
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.64 E-value=1.2e-12 Score=144.96 Aligned_cols=305 Identities=15% Similarity=0.085 Sum_probs=218.0
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.|..|..+...|+ +++|+..|+++++. +|.+ ..++..++.+|...|++++|+..++.+..
T Consensus 38 ~y~~g~~~~~~~~---~~~A~~~~~~al~~---~p~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 38 DYFKGLNFLLNEQ---PDKAIDLFIEMLKV---DPET--------------VELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHHhc---Cccc--------------HHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 6667899999999 99999999999997 4421 23678899999999999999999998877
Q ss_pred cCCCCCCCC----CcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhc
Q 004720 304 GSFDGGDHH----ASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLG 378 (733)
Q Consensus 304 ~~~~~~~~~----p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~ 378 (733)
.+ ... +..++..+.++...|++++|+..+..++...+.....+...+.+|...+. +.|.+.++
T Consensus 98 ~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-------- 165 (389)
T PRK11788 98 RP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAE-------- 165 (389)
T ss_pred CC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHH--------
Confidence 32 111 13456778899999999999999998886444444445555566654444 33333333
Q ss_pred cCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHH
Q 004720 379 RCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEA 458 (733)
Q Consensus 379 ~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~ 458 (733)
+++ +..|.+.. ......+++.|..+++.|++++
T Consensus 166 --------------~~~--~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 166 --------------RLE--KLGGDSLR-------------------------------VEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred --------------HHH--HhcCCcch-------------------------------HHHHHHHHHHHHHHHhCCCHHH
Confidence 222 11221100 0011233458899999999999
Q ss_pred HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHhcCCHHHHHHH
Q 004720 459 SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N-IASAFLKFKIYLQKNDQEGAINQ 536 (733)
Q Consensus 459 A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~ 536 (733)
|+.+|+.++...|.. ...+..++.+|.+.|++++|.++++++.+.+| + ..+...+..++...|+.++|++.
T Consensus 199 A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 199 ARALLKKALAADPQC-------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred HHHHHHHHHhHCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999876643 35678899999999999999999999999998 4 34556688999999999999999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhh--cCChhHHHHHHH
Q 004720 537 ILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQE--TGNESEVLKYMK 614 (733)
Q Consensus 537 l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~--~~~~~~~l~~~~ 614 (733)
++.+....+..+.+ ..-+....+.|+.+.|+..|+..++..+.+ ..++.++...... .|..++.+..++
T Consensus 272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~--------~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 272 LRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSL--------RGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCH--------HHHHHHHHHhhhccCCccchhHHHHHH
Confidence 99998876644444 444577778999999999999888843221 1233344333322 456677777777
Q ss_pred HHHHHhhhc
Q 004720 615 RAHARTSEI 623 (733)
Q Consensus 615 ~A~~~l~~~ 623 (733)
+........
T Consensus 343 ~~~~~~~~~ 351 (389)
T PRK11788 343 DLVGEQLKR 351 (389)
T ss_pred HHHHHHHhC
Confidence 777644333
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.64 E-value=1.4e-12 Score=157.15 Aligned_cols=356 Identities=14% Similarity=0.029 Sum_probs=242.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
..++.-.|++++|+..+.++..+.|... .++.++|..+...|+ +++|+..|++++.+ .|.+.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a-------~~~~~lA~~~~~~g~---~~~A~~~~~~al~~---~P~~~----- 83 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPA-------RGYAAVAVAYRNLKQ---WQNSLTLWQKALSL---EPQND----- 83 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCH-----
Confidence 4677889999999999999987665533 347777888889999 99999999999998 54321
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
..+..++.++...|++++|+..++.+.+. .+.++. ++..+.++...|++++|+..+.+.+...|..
T Consensus 84 ---------~a~~~la~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 84 ---------DYQRGLILTLADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred ---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 14568899999999999999999988875 456777 8888999999999999999999998656655
Q ss_pred hHHHHhHHHHHHHhch-hhhHHHHHHHHH------------------hhhccCCch------HHHHHHHHHHhhcC-CCC
Q 004720 347 ECIWVSAVEAYFQAAG-TAGAETAKGVFL------------------GLLGRCHVS------AKAAVRMAHRVAGD-EGD 400 (733)
Q Consensus 347 ~~~~ls~~~ly~~~~~-~~a~~~lk~~l~------------------~ll~~~~~~------~~~a~~~l~~~l~~-~~s 400 (733)
..+....+.++...+. +.|+..++.+.. ..+.+.... ...|+..++.++.. ...
T Consensus 150 ~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 150 QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 5555556666655444 445555542210 000000000 13344444455410 122
Q ss_pred CcchHHH-HHH---HHHHHHhhhHHHHHHHhhcchhHHH--hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc
Q 004720 401 GVSEAAV-KLR---AKAVAELVSDERVLALFVGDAAAKE--RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDV 474 (733)
Q Consensus 401 p~~~~~l-~~k---a~~l~~l~~~e~v~~~~~g~~~~~~--~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~ 474 (733)
|+....+ ..+ ...+.+....+.++..|. ...+. ..+.....| .|..++..|++++|+.+|+.++...|.+.
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~--~ll~~~~~~P~~a~~~-la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQ--RLKAEGQIIPPWAQRW-VASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHH--HhhccCCCCCHHHHHH-HHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 3221111 111 111222222333444443 11111 112234444 48899999999999999999887655431
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---------------hHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 475 ENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---------------IASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 475 ~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---------------~~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
. ........++..++..|++++|.+.++++...+| . ...++..+.++...|+.++|++.++
T Consensus 307 ~---~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 307 D---LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred C---CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1123456777788999999999999999988866 2 1245678889999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 539 AMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 539 ~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
++....+.+++++..-+......|+.+.|+..|+..++..+.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 999988888888888788888899999999999999985433
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.63 E-value=2e-12 Score=155.69 Aligned_cols=384 Identities=10% Similarity=-0.044 Sum_probs=260.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
-.|+++.|+..++++....+. . ...+...|.++...|++++|+..+++++.+.|.++..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~--------~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a------- 85 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQL--------P------ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY------- 85 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------
Confidence 357788888888777653210 1 1234455778889999999999999999999887643
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.+.+|..+...|+ +++|+..++++++. .|.+ .. +..++.+|...|++++|+.+++.+.+
T Consensus 86 ~~~la~~l~~~g~---~~eA~~~l~~~l~~---~P~~--------------~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 86 QRGLILTLADAGQ---YDEALVKAKQLVSG---APDK--------------AN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCC--------------HH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5577888888999 99999999999988 4422 12 66789999999999999999999988
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchH----HHHhHHHHHHHhc---------hhhhHHHHH
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPEC----IWVSAVEAYFQAA---------GTAGAETAK 370 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~----~~ls~~~ly~~~~---------~~~a~~~lk 370 (733)
. .+.++...+..+.++...|..++|+..+......++.... .....+.++.... .+.|+..++
T Consensus 145 ~----~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 145 R----APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred h----CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 6 4567777788888888888888888877655442210000 0000111111000 012222222
Q ss_pred HHHHh---------------------hhccCCchHHHHHHHHHHhhcCCCC---CcchHHHHHHHHHHHHhhhHHHHHHH
Q 004720 371 GVFLG---------------------LLGRCHVSAKAAVRMAHRVAGDEGD---GVSEAAVKLRAKAVAELVSDERVLAL 426 (733)
Q Consensus 371 ~~l~~---------------------ll~~~~~~~~~a~~~l~~~l~~~~s---p~~~~~l~~ka~~l~~l~~~e~v~~~ 426 (733)
.++.. ++.. .....++..+++++. .. |++...+ .+.....+...+..+..
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~--g~~~eA~~~~~~ll~--~~~~~P~~a~~~--la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLAR--DRYKDVISEYQRLKA--EGQIIPPWAQRW--VASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhhc--cCCCCCHHHHHH--HHHHHHhcCCcHHHHHH
Confidence 22210 1111 113556666667652 32 3222222 22233333334444443
Q ss_pred hh----cchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh------hh--hhHHHHHHHHHHHHhC
Q 004720 427 FV----GDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN------RI--LRAKSFRVLCLCYLGL 494 (733)
Q Consensus 427 ~~----g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~------~~--~~akl~r~la~cyl~l 494 (733)
+. ..... ........-+.+..+.+.|+|++|+.+++.+....|..... .| +...++..++..+...
T Consensus 295 l~~~l~~~p~~--~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 295 LTELFYHPETI--ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHhhcCCCC--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 33 11100 00001122234667789999999999999988776532100 01 3456788999999999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSN 573 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~ 573 (733)
|++++|++.++++....| ++...+.+..++...|+.++|++.++++....+.++++....+..+...++.+.|...+..
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999888888888888899999999999999999
Q ss_pred HHhhhcCC
Q 004720 574 LLNFYTSG 581 (733)
Q Consensus 574 Ll~~~~~~ 581 (733)
+++..+.+
T Consensus 453 ll~~~Pd~ 460 (765)
T PRK10049 453 VVAREPQD 460 (765)
T ss_pred HHHhCCCC
Confidence 99965554
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=2.4e-11 Score=140.11 Aligned_cols=426 Identities=13% Similarity=0.080 Sum_probs=273.6
Q ss_pred hhHHhccCCcchHHHHHHHHHHHHHH-------Hh---hccCCCh-HHHHH------------HHHHHHHHHHHHHHccC
Q 004720 139 GVVWHDLKKYDLASGCFEKATEIVSK-------LD---ISRISDS-DERKL------------LLDINIARSRTAWEVLE 195 (733)
Q Consensus 139 G~~~~~~g~~~~A~~~lekA~e~~~~-------~~---~~~~~~~-~e~~~------------~l~~l~~rA~~a~~~g~ 195 (733)
|-.|.++|+.++|..-|++|+++.|. +. .+-.+.+ -..++ .-.++..-|.-+...|+
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence 77788999999999999999988662 11 1111011 01111 11355555888889999
Q ss_pred HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHH
Q 004720 196 QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKF 275 (733)
Q Consensus 196 ~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~ 275 (733)
|..+.++..-+...... ...++..||++|+++..+|+ |++|-++|.+|... ++.+. +.
T Consensus 286 y~~v~~la~~ai~~t~~----~~~~aes~Y~~gRs~Ha~Gd---~ekA~~yY~~s~k~---~~d~~-----------~l- 343 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTEN----KSIKAESFYQLGRSYHAQGD---FEKAFKYYMESLKA---DNDNF-----------VL- 343 (1018)
T ss_pred HHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHcc---CCCCc-----------cc-
Confidence 99999999888865432 24578889999999999999 99999999999987 54331 01
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC----ChHHHHHHHHHhhhccCCchHHHH
Q 004720 276 KTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG----RYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 276 ~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g----~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
.+..||+.|+..|+++.+..|++.+.+. .+..+.+..+.+-+|...+ .-|.|...+...+...+.....|+
T Consensus 344 -~~~GlgQm~i~~~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 344 -PLVGLGQMYIKRGDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred -cccchhHHHHHhchHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3556899999999999999999988875 4566777777777777775 346777777766654455556688
Q ss_pred hHHHHHHHhchhhhHHHHHHHHHhhhccCCch-----------------HHHHHHHHHHhhcCC----CCCcchHH----
Q 004720 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS-----------------AKAAVRMAHRVAGDE----GDGVSEAA---- 406 (733)
Q Consensus 352 s~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~-----------------~~~a~~~l~~~l~~~----~sp~~~~~---- 406 (733)
..+.+|...+.-.++.++..++..+..+.++- ...|...+...+. . ..++.++.
T Consensus 419 ~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~-~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG-KLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh-hhhhhcCccccccchhH
Confidence 88888888777555888887765543332221 1111111111111 1 11222100
Q ss_pred -HHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhh-----
Q 004720 407 -VKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILR----- 480 (733)
Q Consensus 407 -l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~----- 480 (733)
.|..++++.++-..+...+... ...+..+..+..+--.|...-..++..+|..|++.+|.++..+...+.-.
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk--~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYK--SILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHH--HHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHH
Confidence 1344444444322111111111 11222333333333345455556777777777777776655442211111
Q ss_pred ------------------------HHHHHHHHHHHHhC------------CCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 481 ------------------------AKSFRVLCLCYLGL------------SLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 481 ------------------------akl~r~la~cyl~l------------~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+-....||+.|+.. +.+++|++.|.++++.|| |+.+.--..-|
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIV 655 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhh
Confidence 11223455555532 678899999999999999 99999889999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTD-FLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILT 600 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~-lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~ 600 (733)
....|++.+|+..+..+..+....+| .|.+ +|.+.++|+...|+..++..+.+.-.. .-..++-||.|..-
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl-ah~~~e~~qy~~AIqmYe~~lkkf~~~-----~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNL-AHCYVEQGQYRLAIQMYENCLKKFYKK-----NRSEVLHYLARAWY 727 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeH-HHHHHHHHHHHHHHHHHHHHHHHhccc-----CCHHHHHHHHHHHH
Confidence 99999999999999999888764444 5555 488999999999999998888754321 12244456666653
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=7.3e-13 Score=147.80 Aligned_cols=305 Identities=14% Similarity=0.112 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHhhhHHhccCCcc--hHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYD--LASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLN 204 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~--~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~ 204 (733)
+...++......|.++.-+.+|. .|+.+|++-.+.. + . + -=+++.-+++|..+++|++|..+++
T Consensus 312 ~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~---~---n-t-------~wvl~q~GrayFEl~~Y~~a~~~F~ 377 (638)
T KOG1126|consen 312 DASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHH---Y---N-T-------GWVLSQLGRAYFELIEYDQAERIFS 377 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc---C---C-c-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566677776666665 6666666611111 0 0 0 0234445778889999999999999
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHH
Q 004720 205 RAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAI 284 (733)
Q Consensus 205 rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~ 284 (733)
++.++.|-.-+.++..+.++|.+- + +-++..|.+ ++++.++. +|+ .|-.+|+|
T Consensus 378 ~~r~~~p~rv~~meiyST~LWHLq-------~----~v~Ls~Laq--~Li~~~~~----sPe----------sWca~GNc 430 (638)
T KOG1126|consen 378 LVRRIEPYRVKGMEIYSTTLWHLQ-------D----EVALSYLAQ--DLIDTDPN----SPE----------SWCALGNC 430 (638)
T ss_pred HHHhhccccccchhHHHHHHHHHH-------h----hHHHHHHHH--HHHhhCCC----CcH----------HHHHhcch
Confidence 999998877777777777777442 2 223333333 44333332 122 78888999
Q ss_pred HhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhh
Q 004720 285 HLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTA 364 (733)
Q Consensus 285 yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~ 364 (733)
|.-+++++.|++|++.+.+. ++.+..++-|.+.=+....++|.|...++..+.
T Consensus 431 fSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----------------------- 483 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----------------------- 483 (638)
T ss_pred hhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----------------------
Confidence 99999999999999999885 334444444444333334444444444443221
Q ss_pred hHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHH
Q 004720 365 GAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLW 444 (733)
Q Consensus 365 a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW 444 (733)
-+|.|-.+|+
T Consensus 484 ----------------------------------~~~rhYnAwY------------------------------------ 493 (638)
T KOG1126|consen 484 ----------------------------------VDPRHYNAWY------------------------------------ 493 (638)
T ss_pred ----------------------------------CCchhhHHHH------------------------------------
Confidence 2333322232
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
-.|.+|.|+++|+.|.-.|++|+++.|.+ .-+..-++..+.++|+.|+|..++++|..+|| ++++.|.+..+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 27999999999999999999999998865 34667788999999999999999999999999 99999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+...+++++|++.++.++.+.+.....+.+-+....+.|+...|+.=+.-..+
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99999999999999999999988778888888999999999998765555555
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=3.2e-10 Score=138.20 Aligned_cols=468 Identities=11% Similarity=-0.031 Sum_probs=285.7
Q ss_pred hHHHHH-HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 004720 126 SPAIKS-ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLN 204 (733)
Q Consensus 126 ~~~~~~-~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~ 204 (733)
++.+|- +..+...|.-....|+++.|+..|++|++..|.. ..+...-|.+++.+|++++|+..++
T Consensus 37 ~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--------------~~~~~~LA~~yl~~g~~~~A~~~~~ 102 (987)
T PRK09782 37 SDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN--------------IPLTLYLAEAYRHFGHDDRARLLLE 102 (987)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555554 4677788999999999999999999999987631 1233444789999999999999999
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHH
Q 004720 205 RAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAI 284 (733)
Q Consensus 205 rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~ 284 (733)
++..++|.+...+..+ |.. ++ +++|+..|++.++. .|.+.+ ++..++..
T Consensus 103 kAv~ldP~n~~~~~~L-------a~i----~~---~~kA~~~ye~l~~~---~P~n~~--------------~~~~la~~ 151 (987)
T PRK09782 103 DQLKRHPGDARLERSL-------AAI----PV---EVKSVTTVEELLAQ---QKACDA--------------VPTLRCRS 151 (987)
T ss_pred HHHhcCcccHHHHHHH-------HHh----cc---ChhHHHHHHHHHHh---CCCChh--------------HHHHHHHH
Confidence 9999999766432222 222 67 89999999999998 654332 55666666
Q ss_pred --------HhccCcHHHHHHHHHHHHccCCCCCCCCCcHH-HHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHH
Q 004720 285 --------HLQKGEYESVIKCVRVLREGSFDGGDHHASLP-VLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVE 355 (733)
Q Consensus 285 --------yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~-~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ 355 (733)
|.+.+...+++ + ...+. ..-||.+. +.+.+++...|++++|+..+..++...+.+....+.+..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL---~-lr~~~---~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ 224 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQL---N-DATFA---ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFD 224 (987)
T ss_pred hhccchhhhhhHHHHHHHH---H-HhhhC---CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 66665544444 4 33321 11145544 666999999999999999999999777777777777777
Q ss_pred HHHHh-chhhhHHHHHHHH-----------HhhhccCCchHHHHHHHHHHhhcC-CCCCcchHHH---------------
Q 004720 356 AYFQA-AGTAGAETAKGVF-----------LGLLGRCHVSAKAAVRMAHRVAGD-EGDGVSEAAV--------------- 407 (733)
Q Consensus 356 ly~~~-~~~~a~~~lk~~l-----------~~ll~~~~~~~~~a~~~l~~~l~~-~~sp~~~~~l--------------- 407 (733)
+|... +.+.+...++..+ ..++..-+ ...+..++..+--+ ...|++...+
T Consensus 225 ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~--~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 225 VLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGE--KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred HHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCC--HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 88763 2222222221111 00111000 12333333332100 1112222211
Q ss_pred ---------HHHHHH--H---HHhhhHHHHHHHhh---cchhHH------------------------HhhHHHHHHHHH
Q 004720 408 ---------KLRAKA--V---AELVSDERVLALFV---GDAAAK------------------------ERIAMHAVLWNC 446 (733)
Q Consensus 408 ---------~~ka~~--l---~~l~~~e~v~~~~~---g~~~~~------------------------~~~~~~~llW~~ 446 (733)
+.+..+ + .+.....-++.+.. |..... ..+.....+-..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~ 382 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQL 382 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHH
Confidence 001000 0 00000011111111 111000 001122233345
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCch--------------h------------------------------------
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVE--------------N------------------------------------ 476 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--------------~------------------------------------ 476 (733)
+....++|++++|..+|+.+..+.+..-. +
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 66678899999999999998764221100 0
Q ss_pred --------hhh--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 477 --------RIL--RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 477 --------~~~--~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
.+. .+.++.+++.|+.. +++++|+..+.++....|.....+....++...|++++|+.+++++....+.
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 012 56678999999998 8999999999999999995445666778888999999999999998877665
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcccC
Q 004720 547 TTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGAN 626 (733)
Q Consensus 547 ~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~~~ 626 (733)
.+..+.+ +..+.+.|+.+.|+..+...++.. .+ ...... .+.......|+.++.+..+.+|...-+.
T Consensus 542 ~~a~~~l-a~all~~Gd~~eA~~~l~qAL~l~-P~---~~~l~~----~La~~l~~~Gr~~eAl~~~~~AL~l~P~---- 608 (987)
T PRK09782 542 NEDLLAA-ANTAQAAGNGAARDRWLQQAEQRG-LG---DNALYW----WLHAQRYIPGQPELALNDLTRSLNIAPS---- 608 (987)
T ss_pred cHHHHHH-HHHHHHCCCHHHHHHHHHHHHhcC-Cc---cHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHhCCC----
Confidence 5555544 466778899999999998888732 11 111111 1111122347788888888888754221
Q ss_pred ccCCCccccchhhHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHccccCCc
Q 004720 627 CFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQ 680 (733)
Q Consensus 627 ~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~ 680 (733)
.. .-.|+|.-+.+.+.++.+..++.-+.+ +-|++.
T Consensus 609 -----------~~-----a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~ 643 (987)
T PRK09782 609 -----------AN-----AYVARATIYRQRHNVPAAVSDLRAALE---LEPNNS 643 (987)
T ss_pred -----------HH-----HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH
Confidence 01 114666666666777777777766666 455554
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=1.9e-10 Score=132.18 Aligned_cols=356 Identities=13% Similarity=0.106 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
+.-+..+|...-..|+++.|+.++..++..+|..+.. |+.+|.++-.+|+ .+++....--|--+ +|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~a-------y~tL~~IyEqrGd---~eK~l~~~llAAHL---~p~ 205 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIA-------YYTLGEIYEQRGD---IEKALNFWLLAAHL---NPK 205 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhh-------HHHHHHHHHHccc---HHHHHHHHHHHHhc---CCC
Confidence 5566677888888899999999999999999987754 7788888888889 89987766666565 443
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+. .-|..++....++|++++|..||..+.+.. +.+-...+-++.++.+.|+...|...+..+
T Consensus 206 d~--------------e~W~~ladls~~~~~i~qA~~cy~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 206 DY--------------ELWKRLADLSEQLGNINQARYCYSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred Ch--------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 22 167778888899999999999999998852 333334488899999999999999999888
Q ss_pred hhccCCchHH--HHhH----HHHHHH-hchhhhHHHHHHHHHhhhcc--CCch-------------HHHHHHHHHHhhcC
Q 004720 340 VEIKGIPECI--WVSA----VEAYFQ-AAGTAGAETAKGVFLGLLGR--CHVS-------------AKAAVRMAHRVAGD 397 (733)
Q Consensus 340 l~~~~~~~~~--~ls~----~~ly~~-~~~~~a~~~lk~~l~~ll~~--~~~~-------------~~~a~~~l~~~l~~ 397 (733)
+...| +.++ +... +..|.. +.++.|.+.+...+. .... ..++ ...+...+...-.-
T Consensus 268 ~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s-~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 268 LQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALS-KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR 345 (895)
T ss_pred HhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc
Confidence 74333 1111 1122 222222 222455555544433 0000 0000 01111111111110
Q ss_pred CCCCcchHHH----H------------------HHH----HHHHHhhhHHHH--HHHhhcchhHHHhhHHHHHHHHHHHH
Q 004720 398 EGDGVSEAAV----K------------------LRA----KAVAELVSDERV--LALFVGDAAAKERIAMHAVLWNCASI 449 (733)
Q Consensus 398 ~~sp~~~~~l----~------------------~ka----~~l~~l~~~e~v--~~~~~g~~~~~~~~~~~~llW~~g~~ 449 (733)
++.+ |+.+| . -++ .-+-.++..+.. +..|...... ......-++.+.+..
T Consensus 346 ~~e~-d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 346 ESEK-DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-WVSDDVDLYLDLADA 423 (895)
T ss_pred ccCC-ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-ChhhhHHHHHHHHHH
Confidence 1112 22222 0 000 000111111111 0001100000 122334577788999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC
Q 004720 450 LFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN 528 (733)
Q Consensus 450 ~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g 528 (733)
+-..|+|++|+++|.....-.+. .++-++.++|.||..+|++++|++.|++++.++| +......+..++.+.|
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGY------QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccc------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 99999999999999998765442 3477999999999999999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHhccCC-------Ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 529 DQEGAINQILAMTICLDF-------TT--DFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~~-------~~--~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+.|+|++.++.+..-... .| -++..-+..-.+.|+.+..+.....|+.
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999988876521100 12 2555556666778888887666655554
No 27
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.50 E-value=3.6e-12 Score=143.31 Aligned_cols=266 Identities=17% Similarity=0.084 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh-cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLF-GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~-~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
..++.+-+..+..+|+|+.|+..+++|+++.. .....+..++..+.++|..|...++ |.+|+..|++|+.+.+...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k---~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK---YDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhc
Confidence 34555669999999999999999999998853 3445566778888899999999999 9999999999999988765
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH---HHHHHHHHhcCChHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP---VLAMKAWLGLGRYNEAEL 334 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~---~lk~~il~~~g~~deAi~ 334 (733)
+.. .+..+.++.+|+.+|...|+|++|..+++.+.+|.. ..+..+|.+. ..-+-++...+++++|+.
T Consensus 276 G~~---------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 276 GED---------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred CCC---------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 444 234567999999999999999999999888877643 2234555544 333345556688999999
Q ss_pred HHHHhh---hccC-----CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchH
Q 004720 335 ELRGMV---EIKG-----IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEA 405 (733)
Q Consensus 335 ~l~~~l---~~~~-----~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~ 405 (733)
.++..+ .+.+ +...++-+++.+|...++ ..|.+.+++++.... ...
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~---------------~~~---------- 401 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR---------------ELL---------- 401 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---------------hcc----------
Confidence 987654 2111 233445566666666655 555555554332211 110
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-CchhhhhhHHHH
Q 004720 406 AVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF-DVENRILRAKSF 484 (733)
Q Consensus 406 ~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~-~~~~~~~~akl~ 484 (733)
.+...-+..-+|+.|..+++.++|.+|.+.|..+..+.+. ++. +++.--.|
T Consensus 402 ---------------------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~-~~~~~~~~ 453 (508)
T KOG1840|consen 402 ---------------------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD-HPDVTYTY 453 (508)
T ss_pred ---------------------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC-CCchHHHH
Confidence 0011223456899999999999999999999998876532 222 46888899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+||+..|-.+|+|++|+++.+.++..
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999987644
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.5e-12 Score=145.31 Aligned_cols=271 Identities=15% Similarity=0.100 Sum_probs=202.7
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
.+-++.|+.|+++++|++|..+|+.+-...+-.. + -+++| ..+.|...+-.+=-.+.+-..+.+|.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv------~-----~meiy---ST~LWHLq~~v~Ls~Laq~Li~~~~~ 419 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV------K-----GMEIY---STTLWHLQDEVALSYLAQDLIDTDPN 419 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------c-----chhHH---HHHHHHHHhhHHHHHHHHHHHhhCCC
Confidence 4567899999999999999999998876644100 0 03444 44566555544434444555566777
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHH
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYE 292 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~e 292 (733)
.|.. .-.+|.++.-+++ |+.|+++|++|+.+ +|... + ++.++|.-+...++||
T Consensus 420 sPes-------Wca~GNcfSLQkd---h~~Aik~f~RAiQl---dp~fa-----Y---------ayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 420 SPES-------WCALGNCFSLQKD---HDTAIKCFKRAIQL---DPRFA-----Y---------AYTLLGHESIATEEFD 472 (638)
T ss_pred CcHH-------HHHhcchhhhhhH---HHHHHHHHHHhhcc---CCccc-----h---------hhhhcCChhhhhHHHH
Confidence 7753 6678888888888 89999999999888 54221 1 5666677777778899
Q ss_pred HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh-ccCCchHHHHhHHHHHHHhchhhhHHHHHH
Q 004720 293 SVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE-IKGIPECIWVSAVEAYFQAAGTAGAETAKG 371 (733)
Q Consensus 293 kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~-~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~ 371 (733)
+|..+++.+... .+.|-.++|=.+-+|++.++++.|+-++++.+. +|.+..-+
T Consensus 473 ~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~---------------------- 526 (638)
T KOG1126|consen 473 KAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL---------------------- 526 (638)
T ss_pred hHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH----------------------
Confidence 999999888875 456667778888888888888888888776653 21111000
Q ss_pred HHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHH
Q 004720 372 VFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILF 451 (733)
Q Consensus 372 ~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~ 451 (733)
=..|..+.
T Consensus 527 ------------------------------------------------------------------------~~~g~~~~ 534 (638)
T KOG1126|consen 527 ------------------------------------------------------------------------CHIGRIQH 534 (638)
T ss_pred ------------------------------------------------------------------------hhhhHHHH
Confidence 01466777
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~ 530 (733)
+.|+.++|+++|++|.+.+|.+.- .-+.++..+..+++|++|...+++..++-| +....+++.+||.+.|++
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l-------~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPL-------CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCch-------hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 888999999999999999887752 347788899999999999999999999999 888999999999999999
Q ss_pred HHHHHHHHHHHhccCCChH
Q 004720 531 EGAINQILAMTICLDFTTD 549 (733)
Q Consensus 531 e~Al~~l~~~~~~~~~~~~ 549 (733)
+.|+..+--+..+.+...+
T Consensus 608 ~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHhhHHHhcCCCccch
Confidence 9999988888887665444
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.48 E-value=1.1e-09 Score=130.95 Aligned_cols=402 Identities=12% Similarity=0.036 Sum_probs=260.5
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......+...+..|+++.|...|+++++..|... . .+ . --+.++...|+.++|+..++|+. .|
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~------~---av-~----dll~l~~~~G~~~~A~~~~eka~--~p 97 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS------G---QV-D----DWLQIAGWAGRDQEVIDVYERYQ--SS 97 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch------h---hH-H----HHHHHHHHcCCcHHHHHHHHHhc--cC
Confidence 34667778888899999999999999998765210 0 00 0 11344556699999999999999 44
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
....... +...|..+...|+ |++|+..|+++++. +|.+. .++..|+..|.+.+++
T Consensus 98 ~n~~~~~-----llalA~ly~~~gd---yd~Aiely~kaL~~---dP~n~--------------~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 98 MNISSRG-----LASAARAYRNEKR---WDQALALWQSSLKK---DPTNP--------------DLISGMIMTQADAGRG 152 (822)
T ss_pred CCCCHHH-----HHHHHHHHHHcCC---HHHHHHHHHHHHhh---CCCCH--------------HHHHHHHHHHhhcCCH
Confidence 4332222 3344566678888 99999999999998 55332 1556778999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH--hcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHH
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWL--GLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAET 368 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~--~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~ 368 (733)
++|++.++.+.+. +|.....++.+++ ..+++.+|+..+++++...|....++......+...+. +.|.+.
T Consensus 153 ~eAl~~l~~l~~~-------dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 153 GVVLKQATELAER-------DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred HHHHHHHHHhccc-------CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999888764 4443322444444 45667679999999996666555555454444444443 455544
Q ss_pred HHHHH--H----------------hhhcc----CCch----HHHHHHHHHHhhc-CCCCCcchHHH----HHHHHHHHHh
Q 004720 369 AKGVF--L----------------GLLGR----CHVS----AKAAVRMAHRVAG-DEGDGVSEAAV----KLRAKAVAEL 417 (733)
Q Consensus 369 lk~~l--~----------------~ll~~----~~~~----~~~a~~~l~~~l~-~~~sp~~~~~l----~~ka~~l~~l 417 (733)
.+..- + ...+. ..++ .+.++.-.+.++. ....|.....+ ..+...+...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 44210 0 00010 0111 1122333333330 01223221111 2333333333
Q ss_pred hhHHHHHHHhh-----cchh------------------HHHhhHHH--------------HHHH--HHHHHHHhcCCHHH
Q 004720 418 VSDERVLALFV-----GDAA------------------AKERIAMH--------------AVLW--NCASILFRSKDYEA 458 (733)
Q Consensus 418 ~~~e~v~~~~~-----g~~~------------------~~~~~~~~--------------~llW--~~g~~~~k~~~y~~ 458 (733)
.....|++.+. |... .+...-+. .+.+ ..-..+.++++|++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 32233322222 1100 01011111 1211 13456789999999
Q ss_pred HHHHHHHhhccCCC--------CchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCC
Q 004720 459 SAEMFEKSMLYLPF--------DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND 529 (733)
Q Consensus 459 A~~~y~~aL~~~~~--------~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd 529 (733)
|..+......-.|. ....+++....++.++.++.-.|++.+|.+.+++.+...| ++.....++.++...|.
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 99999988764441 1111357789999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 530 QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
..+|.+.++......+.+..+...-+..++..++...|...+..|++.++++
T Consensus 466 p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 466 PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 9999999999888877777777777788888999999999999999976665
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.46 E-value=4.7e-11 Score=145.34 Aligned_cols=289 Identities=11% Similarity=-0.047 Sum_probs=199.9
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
-+|++..+...+..+....|..|.. .-+.+++++|.++.. +. +++|+..|.++... .|.+
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~--~~~~a~~~LG~~l~~-~~---~~eAi~a~~~Al~~---~Pd~----------- 509 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPS--YDAAAWNRLAKCYRD-TL---PGVALYAWLQAEQR---QPDA----------- 509 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCC--CCHHHHHHHHHHHHh-CC---cHHHHHHHHHHHHh---CCch-----------
Confidence 3677766666666666655543320 123578999999887 66 78899999999887 4311
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
.....++.++...|++++|+.+++.+... +..+...+..+.++...|++++|+..+...+...+....++.
T Consensus 510 ----~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~ 580 (987)
T PRK09782 510 ----WQHRAVAYQAYQVEDYATALAAWQKISLH-----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW 580 (987)
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH
Confidence 02445577778899999999999988764 233455678888999999999999999888854332222221
Q ss_pred hHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch
Q 004720 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA 431 (733)
Q Consensus 352 s~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~ 431 (733)
.+.......++ ...|...+.+.+ +..|+ ..
T Consensus 581 ~La~~l~~~Gr---------------------~~eAl~~~~~AL--~l~P~-~~-------------------------- 610 (987)
T PRK09782 581 WLHAQRYIPGQ---------------------PELALNDLTRSL--NIAPS-AN-------------------------- 610 (987)
T ss_pred HHHHHHHhCCC---------------------HHHHHHHHHHHH--HhCCC-HH--------------------------
Confidence 11111111111 133444444444 34442 21
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
.+.+.|..+.+.|++++|+.+|+.++...|.+ +.++.+++.++...|++++|++.+++|++++
T Consensus 611 ----------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 611 ----------AYVARATIYRQRHNVPAAVSDLRAALELEPNN-------SNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred ----------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12247888889999999999999999887754 3578899999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
| ++...+.+..++...|++++|+.++++.....+...++..-.........+.+-+.++++.-..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9 8888889999999999999999999999888766656555555555555556666665554444
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=6.5e-10 Score=120.20 Aligned_cols=359 Identities=15% Similarity=0.092 Sum_probs=219.0
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
...|..+-+.|.-++..|+ |++|+++|.+|++++.. ++ .-+.+++.||...|+|+++++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kk---Y~eAIkyY~~AI~l~p~---ep--------------iFYsNraAcY~~lgd~~~Vied 171 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKK---YDEAIKYYTQAIELCPD---EP--------------IFYSNRAACYESLGDWEKVIED 171 (606)
T ss_pred HHHHHHHHhhhhhhhhccc---HHHHHHHHHHHHhcCCC---Cc--------------hhhhhHHHHHHHHhhHHHHHHH
Confidence 3456667789999999999 99999999999999443 11 1577889999999999999998
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhchhhhHHHHHHHHHhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAGTAGAETAKGVFLGL 376 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~l 376 (733)
-..+.++ ++.+..+++-+..++.++|++++|...+--.-.+.+ ....+-.-+=..+. ..|-..++.-+..-
T Consensus 172 ~TkALEl----~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk----k~a~~ka~e~~k~n 243 (606)
T KOG0547|consen 172 CTKALEL----NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK----KQAMKKAKEKLKEN 243 (606)
T ss_pred HHHHhhc----CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH----HHHHHHHHHhhccc
Confidence 8888876 456666779999999999999999988643222111 00000000001111 11112222111100
Q ss_pred hccCCchHHHHHHHHHHhhcCCCC--Cc---c-hHHHHHHHHHHHHhh---hHHHHHHHhh----cchh-------HHHh
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGD--GV---S-EAAVKLRAKAVAELV---SDERVLALFV----GDAA-------AKER 436 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~s--p~---~-~~~l~~ka~~l~~l~---~~e~v~~~~~----g~~~-------~~~~ 436 (733)
..+--|+...-...+..|.. +.. ++ + ++.....+....+.. .++.+.+.++ ++.. ..+.
T Consensus 244 r~p~lPS~~fi~syf~sF~~-~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l 322 (606)
T KOG0547|consen 244 RPPVLPSATFIASYFGSFHA-DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL 322 (606)
T ss_pred CCCCCCcHHHHHHHHhhccc-cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH
Confidence 01112221111222222210 000 00 0 011001111100000 1222222222 1111 0112
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.-+...+-..|.-+|-.|++-.|-+-|..++..+|.+. ++|..++..|+..++-.+-..+|++|..+|| ++.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-------~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d 395 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-------SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD 395 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-------hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc
Confidence 22233333489999999999999999999999888663 4599999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDFTT-DFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRT 594 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~-~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~ 594 (733)
++|-+.+++...+++++|+..+++..++.+.+. -++.+|+..... +......+-++....+.+. ..+++++
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~----~~Evy~~--- 467 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPN----CPEVYNL--- 467 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC----CchHHHH---
Confidence 999999999999999999999999999854322 345555443333 3455555555555554433 2345553
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhh
Q 004720 595 IVTILTQETGNESEVLKYMKRAHARTS 621 (733)
Q Consensus 595 li~l~~~~~~~~~~~l~~~~~A~~~l~ 621 (733)
....+ ...++-+..+++|..|.+.-+
T Consensus 468 fAeiL-tDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 468 FAEIL-TDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHH-hhHHhHHHHHHHHHHHHhhcc
Confidence 22222 223455678888888886544
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=3e-11 Score=140.42 Aligned_cols=238 Identities=15% Similarity=0.085 Sum_probs=181.8
Q ss_pred HHHHHHHHH---HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHH--HHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 183 NIARSRTAW---EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKS--ALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 183 l~~rA~~a~---~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~--~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
+..|+...+ ..++++.|+.++++|..++|.++..+..++.++...|.. ....++ +++|...+++|+++ +
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~---~~~A~~~~~~Al~l---d 334 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNA---MIKAKEHAIKATEL---D 334 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchH---HHHHHHHHHHHHhc---C
Confidence 334554444 335678999999999999999887777777776655542 123455 89999999999998 6
Q ss_pred CCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 258 LGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 258 ~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
|.+. .++..+|.++...|++++|+.+++.+.+. ++.+|..++..+.++...|++++|+..+.
T Consensus 335 P~~~--------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 335 HNNP--------------QALGLLGLINTIHSEYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred CCCH--------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5332 26778899999999999999999999986 56778888999999999999999999988
Q ss_pred HhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 338 GMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 338 ~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
+.+.. +|++...
T Consensus 397 ~Al~l---------------------------------------------------------~P~~~~~----------- 408 (553)
T PRK12370 397 ECLKL---------------------------------------------------------DPTRAAA----------- 408 (553)
T ss_pred HHHhc---------------------------------------------------------CCCChhh-----------
Confidence 66532 2212100
Q ss_pred hhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCH
Q 004720 418 VSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLI 497 (733)
Q Consensus 418 ~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~ 497 (733)
.+..+..++..|+|++|+.+|+.++...+++ ....+.+++.+|..+|++
T Consensus 409 -------------------------~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~------~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 409 -------------------------GITKLWITYYHTGIDDAIRLGDELRSQHLQD------NPILLSMQVMFLSLKGKH 457 (553)
T ss_pred -------------------------HHHHHHHHHhccCHHHHHHHHHHHHHhcccc------CHHHHHHHHHHHHhCCCH
Confidence 0013345677899999999999998765422 234689999999999999
Q ss_pred HHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 498 DRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 498 ~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
++|.+.+.+.....| +......++.+|...|+ +|...++.+.+...
T Consensus 458 ~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 458 ELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 999999999888888 67777788889888884 78777777766543
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1e-10 Score=117.60 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=162.2
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
..+..++++|..++..|+ +++|..+++++++. .|.+ ...+..++.+|...|++++|+.++
T Consensus 29 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~---~p~~--------------~~~~~~la~~~~~~~~~~~A~~~~ 88 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGD---LEVAKENLDKALEH---DPDD--------------YLAYLALALYYQQLGELEKAEDSF 88 (234)
T ss_pred cHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---Cccc--------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456789999999999999 99999999999887 4321 136777899999999999999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhc
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLG 378 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~ 378 (733)
+.+.+. .+.++...+..+.++...|++++|+..+...+...+
T Consensus 89 ~~al~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------------- 130 (234)
T TIGR02521 89 RRALTL----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL---------------------------------- 130 (234)
T ss_pred HHHHhh----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----------------------------------
Confidence 988875 345667778888899999999999888775543100
Q ss_pred cCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHH
Q 004720 379 RCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEA 458 (733)
Q Consensus 379 ~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~ 458 (733)
.+.. ...+++.|..+++.|++++
T Consensus 131 ---------------------~~~~------------------------------------~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 131 ---------------------YPQP------------------------------------ARSLENAGLCALKAGDFDK 153 (234)
T ss_pred ---------------------cccc------------------------------------hHHHHHHHHHHHHcCCHHH
Confidence 0000 0012346888899999999
Q ss_pred HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 459 SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 459 A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
|.++|..++...|.+ ...+..++.+|...|++++|.++++++++..| ++........++...|+.++|....
T Consensus 154 A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 154 AEKYLTRALQIDPQR-------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHHhCcCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999887644 34678999999999999999999999998888 7788888899999999999999988
Q ss_pred HHHHhc
Q 004720 538 LAMTIC 543 (733)
Q Consensus 538 ~~~~~~ 543 (733)
+.+...
T Consensus 227 ~~~~~~ 232 (234)
T TIGR02521 227 AQLQKL 232 (234)
T ss_pred HHHHhh
Confidence 777553
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=2.5e-10 Score=114.76 Aligned_cols=202 Identities=19% Similarity=0.184 Sum_probs=161.9
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHh
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls 352 (733)
.....+..++.+|...|++++|+..++.+.+. .+.++..+...+.++...|++++|+..+...+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------- 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---------- 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------
Confidence 34568888999999999999999999988775 3456667788888999999999998887655431
Q ss_pred HHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchh
Q 004720 353 AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAA 432 (733)
Q Consensus 353 ~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~ 432 (733)
.|.++.
T Consensus 95 -----------------------------------------------~~~~~~--------------------------- 100 (234)
T TIGR02521 95 -----------------------------------------------NPNNGD--------------------------- 100 (234)
T ss_pred -----------------------------------------------CCCCHH---------------------------
Confidence 111110
Q ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 433 AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 433 ~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.+++.|..++..|+|++|+++|..++...+. +.....+.+++.||...|++++|.+.+.++++.+|
T Consensus 101 ---------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 101 ---------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-----PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred ---------HHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 1234678888999999999999999874321 23456789999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
++...+.+..++...|++++|++.++.+....+.+++.+...+......|+.+.+....+.+..
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7888889999999999999999999999887666777777777888888888888776665544
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=2.5e-10 Score=122.30 Aligned_cols=244 Identities=16% Similarity=0.064 Sum_probs=166.0
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.++.+.++..+++++...+..|. ..+..+++.|..+...|+ +++|+..|++++++ +|.+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~---~~a~~~~~~g~~~~~~g~---~~~A~~~~~~Al~l---~P~~------------ 97 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDE---ERAQLHYERGVLYDSLGL---RALARNDFSQALAL---RPDM------------ 97 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcH---hhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHc---CCCC------------
Confidence 35667788888888865443332 345679999999999999 99999999999998 5432
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh-ccCCch-HHH
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE-IKGIPE-CIW 350 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~-~~~~~~-~~~ 350 (733)
..++..+|.+|...|++++|+..++.+.++ ++.++.+++.++.++...|++++|+..+...+. +++.+. .+|
T Consensus 98 --~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 98 --ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 237899999999999999999999999986 467778889999999999999999999998884 333331 111
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
. .++..... ...+...+.+... ..++
T Consensus 172 ~---~l~~~~~~---------------------~~~A~~~l~~~~~-~~~~----------------------------- 197 (296)
T PRK11189 172 L---YLAESKLD---------------------PKQAKENLKQRYE-KLDK----------------------------- 197 (296)
T ss_pred H---HHHHccCC---------------------HHHHHHHHHHHHh-hCCc-----------------------------
Confidence 0 00100000 1122221111110 0111
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
-.|..+...+..|++.++ +.+..+.........-.+..+..++++|..|.++|++++|+.+|++|++.
T Consensus 198 -----------~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 198 -----------EQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -----------cccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 123345566667777654 34555443333221111456788999999999999999999999999999
Q ss_pred CC--ChHHHHHHHHHHHhcCC
Q 004720 511 EP--NIASAFLKFKIYLQKND 529 (733)
Q Consensus 511 dp--~~~t~~~~~ki~l~~gd 529 (733)
+| .+..+|.+..+....+.
T Consensus 266 ~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 266 NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCchHHHHHHHHHHHHHHHhh
Confidence 97 45666666666665444
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=5.7e-12 Score=133.65 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=45.1
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHH-HHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIV-SKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~-~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
.++.++.++..|+++.|..++.+++.-. +. .+ .+++...|..++..|+++.|+..|++.....+..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~-------~~------~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~ 77 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPP-------DD------PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-------cc------cccccccccccccccccccccccccccccccccc
Confidence 3455888999999999999997766543 21 01 1455556889999999999999999999887776
Q ss_pred chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 214 FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 214 ~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
+.. +.+++.. +..++ +++|...++++++- .+ +. ..+...+.+|...+++++
T Consensus 78 ~~~-------~~~l~~l-~~~~~---~~~A~~~~~~~~~~---~~-~~--------------~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 78 PQD-------YERLIQL-LQDGD---PEEALKLAEKAYER---DG-DP--------------RYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccc-------ccccccc-ccccc---cccccccccccccc---cc-cc--------------chhhHHHHHHHHHhHHHH
Confidence 643 3334333 57777 89999888888765 21 11 134455677888899999
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
+...++.+..... .+.+|..++..+.++.+.|+.++|+..+++.+...|....+
T Consensus 129 ~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~ 182 (280)
T PF13429_consen 129 AEELLEKLEELPA--APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA 182 (280)
T ss_dssp HHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 9999988775320 23456667888999999999999999998887544433333
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.6e-09 Score=115.71 Aligned_cols=401 Identities=14% Similarity=0.111 Sum_probs=227.1
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE 215 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~ 215 (733)
+..|+.+++..+|..|+++|.-|.+-+|. -.+.+.++++-+-.-.++..|+|+.|+.-|+.|....|.+.
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvps---------ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~- 310 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPS---------INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI- 310 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccc---------cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-
Confidence 34577777788888888888888777653 22334456776666777899999999999999999988754
Q ss_pred hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc--chhhhhh-----------------------
Q 004720 216 HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEART--REETTEL----------------------- 270 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~--~~~~~~~----------------------- 270 (733)
.-+|+-.+++.-|+ .++..+.|++-+++-... .+.++ ...+|..
T Consensus 311 -------a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~-dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~a 379 (840)
T KOG2003|consen 311 -------AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEI-DDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADA 379 (840)
T ss_pred -------hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCC-CcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhH
Confidence 24667778888888 888888888888862211 11111 0000000
Q ss_pred ---------------------------hhcHHHHHHHH--------HHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcH
Q 004720 271 ---------------------------KGLKFKTLRFI--------SAIHLQKGEYESVIKCVRVLREGSFDGGDHHASL 315 (733)
Q Consensus 271 ---------------------------~el~~~~l~~L--------a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~ 315 (733)
..++++.+..| +-.|++.|+++.|++.+++.++.. ++. .+.
T Consensus 380 ek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd---nk~-~sa 455 (840)
T KOG2003|consen 380 EKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD---NKT-ASA 455 (840)
T ss_pred HHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc---chh-hHH
Confidence 00111111111 223445555666665555555421 111 111
Q ss_pred H---HHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHH
Q 004720 316 P---VLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRM 390 (733)
Q Consensus 316 ~---~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~ 390 (733)
. +-.++.+....++.+|..+....+.... ++... ++-++..+-++. ++|.++++..+. .+.+ ++.
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~-~nkgn~~f~ngd~dka~~~ykeal~-----ndas---c~e- 525 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAAL-TNKGNIAFANGDLDKAAEFYKEALN-----NDAS---CTE- 525 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHh-hcCCceeeecCcHHHHHHHHHHHHc-----CchH---HHH-
Confidence 1 1112222222345555555444332111 11111 111111111111 455555554321 1111 000
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 391 AHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 391 l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
+++.-....+.+...+..+++|. ++..-+.-..-+|...+++|....+-.+|++||..+-.+.
T Consensus 526 ---------------alfniglt~e~~~~ldeald~f~--klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 526 ---------------ALFNIGLTAEALGNLDEALDCFL--KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred ---------------HHHHhcccHHHhcCHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 01111111133333444556655 2222111112244567888888889999999999998888
Q ss_pred CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 471 PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 471 ~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
|.++ .++.+++-.|-+-|+-..|..++-...+-=| ++.+.--+.-.|+...=+++|++++++..-..+....
T Consensus 589 p~dp-------~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 589 PNDP-------AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred CCCH-------HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 8764 4678889999999999999988888888888 8888777777777777789999999888776554333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhh
Q 004720 550 FLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQE 602 (733)
Q Consensus 550 lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~ 602 (733)
.-.+-+.-..+.||..-|......+..+.+. -+.+||.|+|+.-+.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpe-------dldclkflvri~~dl 707 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-------DLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-------chHHHHHHHHHhccc
Confidence 2222112224478887765555555554433 347788999986544
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.31 E-value=2.5e-09 Score=119.90 Aligned_cols=119 Identities=13% Similarity=-0.037 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch--HHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI--ASAFLKFKI 523 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~--~t~~~~~ki 523 (733)
|..+...|++++|.+.++.++...|.+.. .+ ...-...-++..++.+++.+.++++++.+| ++ .....+..+
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~----~~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRA----IS-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCccc----ch-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 44455555666666666666655554321 00 001111222334555555666666666655 55 444455566
Q ss_pred HHhcCCHHHHHHHHHH--HHhccCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILA--MTICLDFTTDFLSLAAHEAVACQALSVAVAAL 571 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~--~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL 571 (733)
+.+.|++++|.++++. ..+..+.+.+..-+ +....+.|+.+.|....
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L-a~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMA-ADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Confidence 6666666666665553 22222322233322 34444455555554333
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.30 E-value=7e-09 Score=116.26 Aligned_cols=303 Identities=14% Similarity=0.020 Sum_probs=195.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
...++-.+...||++.|...+.++.+..|...- .+.-.|.....+|+ ++.|..+|+++.+. .+.+.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~-------~~llaA~aa~~~g~---~~~A~~~l~~a~~~---~p~~~- 152 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL-------NLIKAAEAAQQRGD---EARANQHLEEAAEL---AGNDN- 152 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH-------HHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCcCc-
Confidence 345677888999999999999999887665321 23345777888999 99999999999876 33211
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
+ .+....+..++..|++++|+..++.+.+. .+.||.+..+.+.++...|++++|+..+......
T Consensus 153 ----------l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 153 ----------I--LVEIARTRILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred ----------h--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 1 13334589999999999999999999886 5789999999999999999999999998888754
Q ss_pred -cCCchHHHHhHHHHH---HHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 343 -KGIPECIWVSAVEAY---FQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 343 -~~~~~~~~ls~~~ly---~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
...+..+-.--...+ ..... +.+.+.+..+....-.+. ++++..+...+..+...
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~--------------------~~~~~l~~~~a~~l~~~ 276 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR--------------------RHNIALKIALAEHLIDC 276 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH--------------------hCCHHHHHHHHHHHHHC
Confidence 223332210000111 11111 222223332211100000 01222222222222222
Q ss_pred hhHHHHHHHhh-cc-hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 418 VSDERVLALFV-GD-AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 418 ~~~e~v~~~~~-g~-~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
...+...+.+. +- ..+.+....+.++ ........++.+.+++.++.+++..|.+. + +.+...+|..+.+.|
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~~l--~~~~~l~~~~~~~~~~~~e~~lk~~p~~~----~-~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLPLC--LPIPRLKPEDNEKLEKLIEKQAKNVDDKP----K-CCINRALGQLLMKHG 349 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhHHH--HHhhhcCCCChHHHHHHHHHHHHhCCCCh----h-HHHHHHHHHHHHHcc
Confidence 22222222222 00 0000010000122 34445667899999999999999888662 3 467889999999999
Q ss_pred CHHHHHHHHH--HHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 496 LIDRAQEYIT--EAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 496 ~~~~A~e~~~--~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
++++|.++++ .+.+.+|++........++.+.|+.++|.+++++...
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999 5778889666666889999999999999999987543
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=5.9e-10 Score=110.94 Aligned_cols=200 Identities=18% Similarity=0.133 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
..++...||..|++.|++..|..-++.+.++ .+..+.++..+..+|.+.|..+-|.+.+++.|.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls------------ 97 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALS------------ 97 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh------------
Confidence 4567788999999999999999999999985 344555668888888888999888888876654
Q ss_pred HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 354 VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 354 ~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
..|++++
T Consensus 98 ---------------------------------------------l~p~~Gd---------------------------- 104 (250)
T COG3063 98 ---------------------------------------------LAPNNGD---------------------------- 104 (250)
T ss_pred ---------------------------------------------cCCCccc----------------------------
Confidence 2232221
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 434 KERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
++-|.|.-+..+|+|++|..||+.|+..--. ...++.+-|++.|.++.|+++.|.+++++++++||
T Consensus 105 --------VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y-----~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 105 --------VLNNYGAFLCAQGRPEEAMQQFERALADPAY-----GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred --------hhhhhhHHHHhCCChHHHHHHHHHHHhCCCC-----CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 2336899999999999999999999863211 23457799999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.+.+..-+++.....|++-.|...++....-.+-+.+.|-|++.++...|+...+. .....|.
T Consensus 172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~-~Y~~qL~ 234 (250)
T COG3063 172 FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ-RYQAQLQ 234 (250)
T ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 88999999999999999999999999998777767789999999999999988774 3444444
No 41
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.9e-08 Score=114.31 Aligned_cols=372 Identities=14% Similarity=0.073 Sum_probs=195.7
Q ss_pred ccCCcchHHHHHHHHHHHHH----HHh-----hccCCChHHHHHH--------------HHHHHHHHHHHH-HccCHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVS----KLD-----ISRISDSDERKLL--------------LDINIARSRTAW-EVLEQNLA 199 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~----~~~-----~~~~~~~~e~~~~--------------l~~l~~rA~~a~-~~g~~~~A 199 (733)
-.|+|..+.++||+++..+- ..+ ++..+ .+-.++. .-.+..-+..+. +.|...++
T Consensus 335 ~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 37999999999999996532 111 11111 1111110 123444455555 78999999
Q ss_pred HHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCC--------HHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 200 ITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNS--------LNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 200 ~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~--------~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
+++..|++++... ..-......|.-.|.+|-.+-...+ +.++++.|++|.++ ++.|+.
T Consensus 414 ldYA~kai~~~~~--~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d~~dp~--------- 479 (799)
T KOG4162|consen 414 LDYAQKAISLLGG--QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---DPTDPL--------- 479 (799)
T ss_pred HHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---CCCCch---------
Confidence 9999999986522 1112344556667777665522111 67788888888888 654442
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC-chHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI-PECIW 350 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~-~~~~~ 350 (733)
++..|+--|....+.+.|...+..+.+.+ ++.++.++.+.+.++.-.+++.+|+..+...+...+. .....
T Consensus 480 -----~if~lalq~A~~R~l~sAl~~~~eaL~l~---~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 480 -----VIFYLALQYAEQRQLTSALDYAREALALN---RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred -----HHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 56667777777777777777777777653 4567777777777777777777777777666633221 11111
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHh---------h--------------hccCCch--HHHHH---HHH-HHh-------
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLG---------L--------------LGRCHVS--AKAAV---RMA-HRV------- 394 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~---------l--------------l~~~~~~--~~~a~---~~l-~~~------- 394 (733)
+.+.--..-++++.++......+.- . +.+.++. ....+ ..+ .+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 1111000011112222222211110 0 0000100 00000 000 000
Q ss_pred -----hcCCCCCcchHHH-----HHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 395 -----AGDEGDGVSEAAV-----KLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFE 464 (733)
Q Consensus 395 -----l~~~~sp~~~~~l-----~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~ 464 (733)
.. ..+|+..+-. ...+....+..-...+.-|+. +..+.-.-.|-.+...|..+...|++.+|.+.|.
T Consensus 632 ~Lp~s~~-~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~--Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 KLPSSTV-LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL--EASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccCcccc-cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH--HHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 0011111000 000000000000000100111 1111112223344446677777777777777777
Q ss_pred HhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH--HHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004720 465 KSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE--YITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMT 541 (733)
Q Consensus 465 ~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e--~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~ 541 (733)
.|+.++|.+. .+...+|.|++..|+-.-|.. ....|+++|| ++...|...++....||.+.|.+||.+..
T Consensus 709 ~Al~ldP~hv-------~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 709 VALALDPDHV-------PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHhcCCCCc-------HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 7777777654 245667777777777666666 7777777777 77777777777777777777777777777
Q ss_pred hccCCCh
Q 004720 542 ICLDFTT 548 (733)
Q Consensus 542 ~~~~~~~ 548 (733)
.+.+.+|
T Consensus 782 qLe~S~P 788 (799)
T KOG4162|consen 782 QLEESNP 788 (799)
T ss_pred hhccCCC
Confidence 7666554
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.29 E-value=5.1e-09 Score=116.94 Aligned_cols=300 Identities=12% Similarity=0.067 Sum_probs=167.8
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
....+...|...+-.||++.|.+.+.++.+..+. . .-++..-|.++...|+++.|.+++.++.+..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~--------p------~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~ 148 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ--------P------VVNYLLAAEAAQQRGDEARANQHLERAAELA 148 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc--------h------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4455667788888889999888877776553210 0 1123344667788999999999999998776
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
|+..-. .....+..++..|+ ++.|...+++..+. .|.+. .+++.++.+|...|+
T Consensus 149 ~~~~~~------~~l~~a~l~l~~g~---~~~Al~~l~~~~~~---~P~~~--------------~al~ll~~~~~~~gd 202 (398)
T PRK10747 149 DNDQLP------VEITRVRIQLARNE---NHAARHGVDKLLEV---APRHP--------------EVLRLAEQAYIRTGA 202 (398)
T ss_pred CcchHH------HHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCCCH--------------HHHHHHHHHHHHHHh
Confidence 653211 11122566678888 89999888888887 44322 267788899999999
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHH-HHHHHHHHhc---CChH---HHHHHH-HHhhhccCCchHHHHhHHHHHHHhch
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLP-VLAMKAWLGL---GRYN---EAELEL-RGMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~-~lk~~il~~~---g~~d---eAi~~l-~~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
+++|++.+..+.+.. ..+|... -+...++... ...+ ++...+ ...-...+....+.+..+..+...+.
T Consensus 203 w~~a~~~l~~l~k~~----~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 203 WSSLLDILPSMAKAH----VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 999998888888742 2222211 1121221110 0000 111111 11101111111111112222211111
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHH
Q 004720 363 TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAV 442 (733)
Q Consensus 363 ~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~l 442 (733)
...+..++.+.+ +..+ ++. +
T Consensus 279 ---------------------~~~A~~~L~~~l--~~~~-~~~------------------------------------l 298 (398)
T PRK10747 279 ---------------------HDTAQQIILDGL--KRQY-DER------------------------------------L 298 (398)
T ss_pred ---------------------HHHHHHHHHHHH--hcCC-CHH------------------------------------H
Confidence 122222222332 1111 110 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFK 522 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~k 522 (733)
. ........++++++++..+.-++-+|.+ +.++..+|..++..+++++|.++++++++.+|+..+...+..
T Consensus 299 ~--~l~~~l~~~~~~~al~~~e~~lk~~P~~-------~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~ 369 (398)
T PRK10747 299 V--LLIPRLKTNNPEQLEKVLRQQIKQHGDT-------PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLAD 369 (398)
T ss_pred H--HHHhhccCCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 0 0111124477777777777777665544 345677777777777777777777777777776666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 004720 523 IYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~ 543 (733)
++.+.|+.++|.++|+.-..+
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 777777777777777765443
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.27 E-value=3.7e-08 Score=121.16 Aligned_cols=325 Identities=12% Similarity=0.083 Sum_probs=168.5
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
++...|+++.|...+.+....... |+. .+|..+-..+.+.|+ .++|..+|++..+. +.. +
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~-pD~-----~tynsLI~~y~k~G~---vd~A~~vf~eM~~~---Gv~-P------- 505 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLK-ADC-----KLYTTLISTCAKSGK---VDAMFEVFHEMVNA---GVE-A------- 505 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCC-CCH-----HHHHHHHHHHHhCcC---HHHHHHHHHHHHHc---CCC-C-------
Confidence 344566666666666666543221 111 123333344445566 66666666655443 210 0
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc--HHHHHHHHHHhcCChHHHHHHHHHhhhc-cC-
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS--LPVLAMKAWLGLGRYNEAELELRGMVEI-KG- 344 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~--~~~lk~~il~~~g~~deAi~~l~~~l~~-~~- 344 (733)
-..+|..+...|.+.|++++|+.+++.+... ...|. ++...+..+.+.|++++|.+.+..|... .+
T Consensus 506 -----dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-----Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 506 -----NVHTFGALIDGCARAGQVAKAFGAYGIMRSK-----NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred -----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 0125566666666666666666666666542 22332 3355556666666666666666555421 11
Q ss_pred Cc-hHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-HHHhhhHH
Q 004720 345 IP-ECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA-VAELVSDE 421 (733)
Q Consensus 345 ~~-~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~-l~~l~~~e 421 (733)
.| ...|-..+..|.+.+. +.|.+.++.+... ...|....+..++.-+.. .+.. ..+.. +.+|...
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~---gi~p~~~tynsLI~ay~k-~G~~-------deAl~lf~eM~~~- 643 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEY---NIKGTPEVYTIAVNSCSQ-KGDW-------DFALSIYDDMKKK- 643 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHh-cCCH-------HHHHHHHHHHHHc-
Confidence 11 2234445555555554 4555555443211 011122222333333321 1111 11111 1111100
Q ss_pred HHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHH
Q 004720 422 RVLALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRA 500 (733)
Q Consensus 422 ~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A 500 (733)
|- ..+ ...|+ ....+.+.|++++|.+.|........ ......|..+..+|.+.|++++|
T Consensus 644 -------Gv--~PD-----~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~------~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 644 -------GV--KPD-----EVFFSALVDVAGHAGDLDKAFEILQDARKQGI------KLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred -------CC--CCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 00 000 01112 34566778888888888887664321 11234677788888888888888
Q ss_pred HHHHHHHHhh--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 501 QEYITEAEKL--EPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD--FLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 501 ~e~~~~A~~l--dp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~--lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.++|+++... .|+..+.-.+...|.+.|+.++|++.++.|.... ..|| .+...+.-+.+.|+.+.|...+..+.+
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888877543 5577777777788888888888888888876542 2343 122223445567777777777777765
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=1.5e-09 Score=122.31 Aligned_cols=263 Identities=16% Similarity=0.173 Sum_probs=175.6
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
....++.++|..+..+|+ |+.|..++++|++++.+..+..+ + .-...+..+|..|...++|++|+..|
T Consensus 197 ~~~~~~~~La~~y~~~g~---~e~A~~l~k~Al~~l~k~~G~~h--l-------~va~~l~~~a~~y~~~~k~~eAv~ly 264 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGR---LEKAEPLCKQALRILEKTSGLKH--L-------VVASMLNILALVYRSLGKYDEAVNLY 264 (508)
T ss_pred hHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHccCccC--H-------HHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344566669999999999 99999999999999887665221 1 12234456999999999999999999
Q ss_pred HHHHccCC-CCCCCCCcHH---HHHHHHHHhcCChHHHHHHHHHhhhc--c-C--CchHH---HHhHHHHHHHhchhhhH
Q 004720 299 RVLREGSF-DGGDHHASLP---VLAMKAWLGLGRYNEAELELRGMVEI--K-G--IPECI---WVSAVEAYFQAAGTAGA 366 (733)
Q Consensus 299 ~~a~~~~~-~~~~~~p~~~---~lk~~il~~~g~~deAi~~l~~~l~~--~-~--~~~~~---~ls~~~ly~~~~~~~a~ 366 (733)
+.+..+.. ..|+.||.+. ...+..|.+.|++++|..++...|.- . . ....+ ..+.+.++...+.
T Consensus 265 ~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~---- 340 (508)
T KOG1840|consen 265 EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE---- 340 (508)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc----
Confidence 98888665 4578899866 44467788999999999998765521 0 0 00000 0000011110000
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNC 446 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~ 446 (733)
.+.++.++.+.+ .+ +...+ |. ....+.-+.=|.
T Consensus 341 -----------------~Eea~~l~q~al-----------------~i--------~~~~~-g~----~~~~~a~~~~nl 373 (508)
T KOG1840|consen 341 -----------------YEEAKKLLQKAL-----------------KI--------YLDAP-GE----DNVNLAKIYANL 373 (508)
T ss_pred -----------------hhHHHHHHHHHH-----------------HH--------HHhhc-cc----cchHHHHHHHHH
Confidence 111111111111 00 00000 11 111223344468
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCC-CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-------CCC-hHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLP-FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-------EPN-IASA 517 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~-~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-------dp~-~~t~ 517 (733)
|..++++|+|++|.++|+.++.+.. .+...+...++.+.++|..|..++.+.+|.+.|.++..+ .|+ ..+.
T Consensus 374 ~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~ 453 (508)
T KOG1840|consen 374 AELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY 453 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 9999999999999999999996542 111113577899999999999999999999999998765 232 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
..+..+|-..|++|.|++..+.+...-
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 578999999999999999888887543
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=6.9e-10 Score=110.46 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
.+........+..|.+++..|++..|..-++||++..|..+ +....+|..|..+|+.+.|.+.|.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--------------~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--------------LAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--------------HHHHHHHHHHHHcCChhhHHHHHHH
Confidence 44555567778999999999999999999999999887533 3445668899999999999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y 285 (733)
|+.++|... ++++|+|-.+..+|. |++|-.||++|+.- |.+.. ...++.+++.|-
T Consensus 95 Alsl~p~~G-------dVLNNYG~FLC~qg~---~~eA~q~F~~Al~~----P~Y~~-----------~s~t~eN~G~Ca 149 (250)
T COG3063 95 ALSLAPNNG-------DVLNNYGAFLCAQGR---PEEAMQQFERALAD----PAYGE-----------PSDTLENLGLCA 149 (250)
T ss_pred HHhcCCCcc-------chhhhhhHHHHhCCC---hHHHHHHHHHHHhC----CCCCC-----------cchhhhhhHHHH
Confidence 999999876 479999999999999 99999999999984 43321 234899999999
Q ss_pred hccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 286 LQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 286 l~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
++.|++++|.++++.+... .+..|....-+.+.+++.|+|-+|...+....
T Consensus 150 l~~gq~~~A~~~l~raL~~----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 150 LKAGQFDQAEEYLKRALEL----DPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred hhcCCchhHHHHHHHHHHh----CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999987 46888888999999999999999999987665
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=1.6e-09 Score=126.07 Aligned_cols=234 Identities=13% Similarity=0.004 Sum_probs=170.2
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc---------cCcHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ---------KGEYES 293 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~---------~~~~ek 293 (733)
.+|..|..++.+.....+++|+..|++|+++ +|.+. ..+..||.+|.. .+++++
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a--------------~a~~~La~~~~~~~~~g~~~~~~~~~~ 322 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSI--------------APYCALAECYLSMAQMGIFDKQNAMIK 322 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccH--------------HHHHHHHHHHHHHHHcCCcccchHHHH
Confidence 4666787666654433389999999999998 65332 255666766642 235899
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHH
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVF 373 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l 373 (733)
|+.+++.+.+. ++.+|.++...+.++...|++++|+..+.+.+..
T Consensus 323 A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------------------------------- 367 (553)
T PRK12370 323 AKEHAIKATEL----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL------------------------------- 367 (553)
T ss_pred HHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------------------
Confidence 99999999886 5678888888899999999999999998766532
Q ss_pred HhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhc
Q 004720 374 LGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRS 453 (733)
Q Consensus 374 ~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~ 453 (733)
.|++... +.+.|..++..
T Consensus 368 --------------------------~P~~~~a------------------------------------~~~lg~~l~~~ 385 (553)
T PRK12370 368 --------------------------SPISADI------------------------------------KYYYGWNLFMA 385 (553)
T ss_pred --------------------------CCCCHHH------------------------------------HHHHHHHHHHC
Confidence 2222111 12368888999
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-C-ChHHHHHHHHHHHhcCCHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE-P-NIASAFLKFKIYLQKNDQE 531 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld-p-~~~t~~~~~ki~l~~gd~e 531 (733)
|+|++|+.+|+.++...|.+.. .+..++..+...|++++|++.+.++++.. | ++..+.++..++...|+.+
T Consensus 386 G~~~eAi~~~~~Al~l~P~~~~-------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 386 GQLEEALQTINECLKLDPTRAA-------AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred CCHHHHHHHHHHHHhcCCCChh-------hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999986532 23445556777899999999999998875 6 6777888999999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 532 GAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 532 ~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
+|.+.++++....+.+..............| +.+...|+.+++...
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9999998886665443333333333333333 467777888777443
No 47
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.22 E-value=1.2e-07 Score=116.78 Aligned_cols=334 Identities=10% Similarity=0.051 Sum_probs=208.1
Q ss_pred hHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHH
Q 004720 140 VVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS 219 (733)
Q Consensus 140 ~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~ 219 (733)
.+|.+.|+++.|...|+++.+.-. . ++ ...+..-...+.+.|+.+.|...+++....... |+.
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl----~---pD------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-Pdv--- 507 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGL----K---AD------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANV--- 507 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCC----C---CC------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCH---
Confidence 345677888888888877664210 0 11 112222245666788888888888887754221 211
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
..|..+-..+.+.|+ +++|...|.+..+. +. .+. ..+|..|..+|.+.|++++|.+.++
T Consensus 508 --vTynaLI~gy~k~G~---~eeAl~lf~~M~~~---Gv-~PD------------~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 508 --HTFGALIDGCARAGQ---VAKAFGAYGIMRSK---NV-KPD------------RVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred --HHHHHHHHHHHHCcC---HHHHHHHHHHHHHc---CC-CCC------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 234455566667777 88888887776553 21 111 1267777888888888888888887
Q ss_pred HHHccCCCCCCCCCc--HHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCchHHHHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 300 VLREGSFDGGDHHAS--LPVLAMKAWLGLGRYNEAELELRGMVEIK-GIPECIWVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~--~~~lk~~il~~~g~~deAi~~l~~~l~~~-~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
.+.... .+..|. ++...+..|.+.|++++|++.+..|.... ......|..++..|.+.+. +.|.+.++.+..
T Consensus 567 eM~~~~---~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~- 642 (1060)
T PLN03218 567 EMKAET---HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK- 642 (1060)
T ss_pred HHHHhc---CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Confidence 776421 123343 44566677888888888888887776332 3344556667777777766 667766665432
Q ss_pred hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH-HHhhhHHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhc
Q 004720 376 LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV-AELVSDERVLALFVGDAAAKERIAMHAVLWN-CASILFRS 453 (733)
Q Consensus 376 ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l-~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~ 453 (733)
....|+......+++-+.. .+. ...+..+ .++.. .|.. . ....|+ ....+.+.
T Consensus 643 --~Gv~PD~~TynsLI~a~~k-~G~-------~eeA~~l~~eM~k--------~G~~------p-d~~tynsLI~ay~k~ 697 (1060)
T PLN03218 643 --KGVKPDEVFFSALVDVAGH-AGD-------LDKAFEILQDARK--------QGIK------L-GTVSYSSLMGACSNA 697 (1060)
T ss_pred --cCCCCCHHHHHHHHHHHHh-CCC-------HHHHHHHHHHHHH--------cCCC------C-CHHHHHHHHHHHHhC
Confidence 1123332333333333321 111 1111111 11100 0000 0 011223 56788999
Q ss_pred CCHHHHHHHHHHhhc--cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCChHHHHHHHHHHHhcCC
Q 004720 454 KDYEASAEMFEKSML--YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--EPNIASAFLKFKIYLQKND 529 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~--~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--dp~~~t~~~~~ki~l~~gd 529 (733)
|++++|.++|+.... +.| + ...|..+..+|.+.|++++|.++++++.+. .|+..|...+...+.+.|+
T Consensus 698 G~~eeA~~lf~eM~~~g~~P-------d-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRP-------T-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999998653 222 1 246899999999999999999999998654 5788888888899999999
Q ss_pred HHHHHHHHHHHHhccCCChH
Q 004720 530 QEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~~ 549 (733)
.++|.+.+..|.+.. ..||
T Consensus 770 le~A~~l~~~M~k~G-i~pd 788 (1060)
T PLN03218 770 ADVGLDLLSQAKEDG-IKPN 788 (1060)
T ss_pred HHHHHHHHHHHHHcC-CCCC
Confidence 999999999998753 3444
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.22 E-value=3.9e-08 Score=109.90 Aligned_cols=300 Identities=14% Similarity=0.039 Sum_probs=201.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHH-hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTF-AKSALSKNETNSLNDALKLMNEALELCEKGLGEART 263 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~-G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~ 263 (733)
.++-.++..||++.|...+.++.+..+ .| .++|.+ +......|+ ++.|..+|+++.+. ++.+.
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p-------~l~~llaA~aA~~~g~---~~~A~~~l~~A~~~---~~~~~-- 152 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAE-QP-------VVNYLLAAEAAQQRGD---EARANQHLERAAEL---ADNDQ-- 152 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccc-ch-------HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCcch--
Confidence 445567778999999987777654321 22 234544 445588999 99999999999886 43221
Q ss_pred chhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc
Q 004720 264 REETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK 343 (733)
Q Consensus 264 ~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~ 343 (733)
.-.....+..++..|++++|+..++.+.+. ++.+|.+..+...++...|+.++|+..+..+....
T Consensus 153 -----------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~----~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 153 -----------LPVEITRVRIQLARNENHAARHGVDKLLEV----APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred -----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 112223488999999999999999999886 57899999999999999999999998887776433
Q ss_pred CCchHHHHhH-HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 344 GIPECIWVSA-VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 344 ~~~~~~~ls~-~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
..+....-.. ...| ..++.......+ ...+..++ +.-|
T Consensus 218 ~~~~~~~~~l~~~a~------------~~l~~~~~~~~~------~~~l~~~w--~~lp--------------------- 256 (398)
T PRK10747 218 VGDEEHRAMLEQQAW------------IGLMDQAMADQG------SEGLKRWW--KNQS--------------------- 256 (398)
T ss_pred CCCHHHHHHHHHHHH------------HHHHHHHHHhcC------HHHHHHHH--HhCC---------------------
Confidence 3222210000 0000 000000000000 00011111 0001
Q ss_pred HHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 423 VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 423 v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
...+....++ -..+..+...|++++|.+..+.++.. +.++ ... +...++..++.+++.+
T Consensus 257 --------~~~~~~~~~~---~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~----~l~-----~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 257 --------RKTRHQVALQ---VAMAEHLIECDDHDTAQQIILDGLKR-QYDE----RLV-----LLIPRLKTNNPEQLEK 315 (398)
T ss_pred --------HHHhCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH----HHH-----HHHhhccCCChHHHHH
Confidence 0000011111 12688889999999999999999984 3332 111 2233345599999999
Q ss_pred HHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004720 503 YITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 503 ~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
.+++.++.+| ++...+...++++..|++++|.+++++..+..+.+++++.++ +...+.|+.+.+....+.-+...
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La-~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLA-DALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999 899999999999999999999999999999987777766664 66667889999987777666633
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-08 Score=112.67 Aligned_cols=336 Identities=14% Similarity=0.086 Sum_probs=223.9
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHH-----------HHH-Hhhc-------c------CCCh-HH-------
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEI-----------VSK-LDIS-------R------ISDS-DE------- 175 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~-----------~~~-~~~~-------~------~~~~-~e------- 175 (733)
...+....--|+.+....|+.+|-.+|.+|+-. ++. +.+. . -.++ .+
T Consensus 138 ~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lye 217 (611)
T KOG1173|consen 138 NLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYE 217 (611)
T ss_pred cchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHH
Confidence 334566677899999999999999999988721 110 0000 0 0000 00
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHh
Q 004720 176 ----------------------RKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALS 233 (733)
Q Consensus 176 ----------------------~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~ 233 (733)
.....+++..+|.-+...++|.......+...+.+|=.++-. -..+| ++..
T Consensus 218 l~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~------~~~ia-~l~e 290 (611)
T KOG1173|consen 218 LKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCL------PLHIA-CLYE 290 (611)
T ss_pred hhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchH------HHHHH-HHHH
Confidence 001457888889999999999999999999998887544321 22445 5556
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC
Q 004720 234 KNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA 313 (733)
Q Consensus 234 ~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p 313 (733)
.|+. -++|.-+.++.+..|. ++-.|...|.=|+-.|.+++|.+|+.++-.+ ++...
T Consensus 291 l~~~------n~Lf~lsh~LV~~yP~--------------~a~sW~aVg~YYl~i~k~seARry~SKat~l----D~~fg 346 (611)
T KOG1173|consen 291 LGKS------NKLFLLSHKLVDLYPS--------------KALSWFAVGCYYLMIGKYSEARRYFSKATTL----DPTFG 346 (611)
T ss_pred hccc------chHHHHHHHHHHhCCC--------------CCcchhhHHHHHHHhcCcHHHHHHHHHHhhc----Ccccc
Confidence 6662 2334444455333331 1226888888888889999999999999876 34555
Q ss_pred cHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHH
Q 004720 314 SLPVLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMA 391 (733)
Q Consensus 314 ~~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l 391 (733)
.++.--+..+...|..|+|+..+...-+-.+ .-+.. +-++--|+..+. ..|-+++..
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~-LYlgmey~~t~n~kLAe~Ff~~-------------------- 405 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS-LYLGMEYMRTNNLKLAEKFFKQ-------------------- 405 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH-HHHHHHHHHhccHHHHHHHHHH--------------------
Confidence 5667777888888899999888765432222 11111 112222332222 333333331
Q ss_pred HHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 004720 392 HRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP 471 (733)
Q Consensus 392 ~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~ 471 (733)
.+ ...|.|+- ++-..|...|+.+.|.+|+.||+.++...+
T Consensus 406 --A~--ai~P~Dpl------------------------------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 406 --AL--AIAPSDPL------------------------------------VLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred --HH--hcCCCcch------------------------------------hhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 11 12232321 111278999999999999999999995444
Q ss_pred -CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--
Q 004720 472 -FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFT-- 547 (733)
Q Consensus 472 -~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~-- 547 (733)
.+.+. +.-.-++.|+|-.|.+++.+++|+.++++|+.+.| ++.++-..+-||...||.+.|+..+.+...+.+++
T Consensus 446 ~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 446 SVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred hccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 22222 23455799999999999999999999999999999 89999999999999999999999999998887654
Q ss_pred -hHHHHHHHHH
Q 004720 548 -TDFLSLAAHE 557 (733)
Q Consensus 548 -~~lL~la~~~ 557 (733)
.++|..|++.
T Consensus 525 ~~~lL~~aie~ 535 (611)
T KOG1173|consen 525 ISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHh
Confidence 3577766554
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.6e-09 Score=112.54 Aligned_cols=248 Identities=13% Similarity=0.064 Sum_probs=184.2
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHH-----------HHhhccCCChHHHHHHH------------HHHHHHHHHHHHc
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVS-----------KLDISRISDSDERKLLL------------DINIARSRTAWEV 193 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~-----------~~~~~~~~~~~e~~~~l------------~~l~~rA~~a~~~ 193 (733)
++|...+...+++.|+..|+.-..-.| .+|... +..+-..+ ...|.-|.-|...
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~---~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN---DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR 343 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh---hhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence 467788889999999999998886533 122211 10111111 2333447777888
Q ss_pred cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhc
Q 004720 194 LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGL 273 (733)
Q Consensus 194 g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el 273 (733)
+++++|+.+++||+.++|... .+..-||-.+...++ -..|+..|.+|+++ +|.+
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~-------~aWTLmGHEyvEmKN---t~AAi~sYRrAvdi---~p~D------------- 397 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYL-------SAWTLMGHEYVEMKN---THAAIESYRRAVDI---NPRD------------- 397 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchh-------HHHHHhhHHHHHhcc---cHHHHHHHHHHHhc---Cchh-------------
Confidence 999999999999999999733 356789999999999 89999999999999 5533
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
.+.|..||++|--.+...=|+.+++.+.+. .+.+|-.+...++||.+.++.++|++.+.+.+...+..-..++++
T Consensus 398 -yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 398 -YRAWYGLGQAYEIMKMHFYALYYFQKALEL----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred -HHHHhhhhHHHHHhcchHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 348999999999999888899999999986 467888999999999999999999999999887667666778899
Q ss_pred HHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchh
Q 004720 354 VEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAA 432 (733)
Q Consensus 354 ~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~ 432 (733)
+++|.+... ..|..++.+.+. .... .+..++ +
T Consensus 473 akLye~l~d~~eAa~~yek~v~------------------~~~~-eg~~~~-----------------~----------- 505 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE------------------VSEL-EGEIDD-----------------E----------- 505 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH------------------HHHh-hcccch-----------------H-----------
Confidence 999987766 455555553321 0000 111111 0
Q ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 004720 433 AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP 471 (733)
Q Consensus 433 ~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~ 471 (733)
.+-+.+| .+.-.++.++|++|-.+...++...+
T Consensus 506 -----t~ka~~f-LA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 506 -----TIKARLF-LAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred -----HHHHHHH-HHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 1122444 67777899999999999999988743
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.17 E-value=6.5e-08 Score=115.87 Aligned_cols=286 Identities=12% Similarity=0.065 Sum_probs=177.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCchHHHHhHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK-GIPECIWVSAVE 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~-~~~~~~~ls~~~ 355 (733)
++..|...|.+.|++++|.+.++.+.. .+..++...+..|.+.|++++|+..+..|.... ......|...+.
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPE-------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCC-------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 556678888888888888888876643 345666777788888888888888887776332 223334556667
Q ss_pred HHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 356 AYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 356 ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
.|.+.+. +.|.+.+..++..- ..++......+++-+. +....+.+.++|..-.. +
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g---~~~d~~~~~~Li~~y~--------------------k~G~~~~A~~vf~~m~~-~ 389 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTG---FPLDIVANTALVDLYS--------------------KWGRMEDARNVFDRMPR-K 389 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhC---CCCCeeehHHHHHHHH--------------------HCCCHHHHHHHHHhCCC-C
Confidence 6665555 44444444332110 1111111122222221 11112223333331110 0
Q ss_pred HhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhc--cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-
Q 004720 435 ERIAMHAVLWN-CASILFRSKDYEASAEMFEKSML--YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL- 510 (733)
Q Consensus 435 ~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~--~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l- 510 (733)
....|| ....+.+.|++++|++.|+.... +.|. ...|..+..++.+.|.+++|.++++++.+.
T Consensus 390 -----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd--------~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 390 -----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN--------HVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred -----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 224567 67788999999999999999664 3332 235888889999999999999999998653
Q ss_pred --CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCch
Q 004720 511 --EPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD--FLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPT 586 (733)
Q Consensus 511 --dp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~--lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~ 586 (733)
.|+..++..+...+.+.|+.++|.+.++.+. ..|+ ....-+.-+...|+.+.+..+++.+++....+...+
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y- 531 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAP----FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY- 531 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch-
Confidence 4566777778999999999999999887653 3343 222223445678999999999999987433321111
Q ss_pred hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 004720 587 KEVVVLRTIVTILTQETGNESEVLKYMKRAHA 618 (733)
Q Consensus 587 ~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~ 618 (733)
-.++.+.. ..|..+++.+.++...+
T Consensus 532 ------~~L~~~y~-~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 532 ------VVLLNLYN-SSGRQAEAAKVVETLKR 556 (697)
T ss_pred ------HHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 12333222 23556666666665543
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=8.8e-08 Score=103.51 Aligned_cols=359 Identities=13% Similarity=0.077 Sum_probs=233.4
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHH---HHh--hccCCChHHHH-H-H------HHHHH--HHHHHHHHccCHHH
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVS---KLD--ISRISDSDERK-L-L------LDINI--ARSRTAWEVLEQNL 198 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~---~~~--~~~~~~~~e~~-~-~------l~~l~--~rA~~a~~~g~~~~ 198 (733)
..+-.|...-+.|+..+|...|-..+...| .+. .++.-++.+.. . . +-.++ .-..++-...+++.
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 344568888899999999999999886322 111 11000111111 1 0 00111 12334446668888
Q ss_pred HHHHHHHHHhh-hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHH
Q 004720 199 AITLLNRAKCL-LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKT 277 (733)
Q Consensus 199 A~~~~~rA~~l-~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~ 277 (733)
++.-+.+-..+ -|.++. +-...|.+.+...| +++|+..|+....- +|- +-+ -
T Consensus 246 ~~~k~e~l~~~gf~~~~~-------i~~~~A~~~y~~rD---fD~a~s~Feei~kn---DPY----Rl~----------d 298 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMY-------IKTQIAAASYNQRD---FDQAESVFEEIRKN---DPY----RLD----------D 298 (559)
T ss_pred HHHHHHHHHhccCCccHH-------HHHHHHHHHhhhhh---HHHHHHHHHHHHhc---CCC----cch----------h
Confidence 88888777766 333432 22356777789999 99999888876654 441 111 1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHH
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAY 357 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly 357 (733)
+-...+++.-.++-.+--..-..+-++ ++..|.+--.-+.-|.-.++.++|+.++++.+...+.....|+-++--|
T Consensus 299 mdlySN~LYv~~~~skLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 299 MDLYSNVLYVKNDKSKLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEY 374 (559)
T ss_pred HHHHhHHHHHHhhhHHHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHH
Confidence 222233332222212211122222233 3455654444455556667899999999999977788888888887778
Q ss_pred HHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHh
Q 004720 358 FQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKER 436 (733)
Q Consensus 358 ~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~ 436 (733)
++.++ ..|++.+++. + +-.|.|-.+|++
T Consensus 375 vEmKNt~AAi~sYRrA----------------------v--di~p~DyRAWYG--------------------------- 403 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRA----------------------V--DINPRDYRAWYG--------------------------- 403 (559)
T ss_pred HHhcccHHHHHHHHHH----------------------H--hcCchhHHHHhh---------------------------
Confidence 88877 7778888743 3 455655444433
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.|-.|.-.+-.-=|+-+|++|+.+-|.|. .+...||.||.++++.++|+..|.+|..... +-.
T Consensus 404 ---------LGQaYeim~Mh~YaLyYfqkA~~~kPnDs-------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 404 ---------LGQAYEIMKMHFYALYYFQKALELKPNDS-------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred ---------hhHHHHHhcchHHHHHHHHHHHhcCCCch-------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 56677777777889999999999988764 5789999999999999999999999999977 888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc----CCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchh
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICL----DFTTD----FLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTK 587 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~----~~~~~----lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~ 587 (733)
....++++|-+.+|.++|.+++++...-. ..++. .+.|| ..-.+.++.+.|.-.....+. . .+.-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA-~~f~k~~~~~~As~Ya~~~~~-~---~~e~ee 542 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLA-EYFKKMKDFDEASYYATLVLK-G---ETECEE 542 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHhhcchHHHHHHHHHHhc-C---CchHHH
Confidence 89999999999999999999998887633 12332 34443 555667888887654444444 2 222445
Q ss_pred HHHHHHHH
Q 004720 588 EVVVLRTI 595 (733)
Q Consensus 588 ~~~~lR~l 595 (733)
.-.++|-+
T Consensus 543 ak~LlRei 550 (559)
T KOG1155|consen 543 AKALLREI 550 (559)
T ss_pred HHHHHHHH
Confidence 55666654
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=4.9e-08 Score=101.79 Aligned_cols=362 Identities=13% Similarity=0.090 Sum_probs=221.7
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 004720 108 RHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARS 187 (733)
Q Consensus 108 R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA 187 (733)
+|+|--|-.........|...+ -..+.|.+|+..|+-.-|+.-|++.+++-|... ..=+.|+
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~----aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--------------~ARiQRg 113 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQ----AIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--------------AARIQRG 113 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHH----HHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--------------HHHHHhc
Confidence 4555545444444444343332 123445566666666667777777776655322 1223446
Q ss_pred HHHHHccCHHHHHHHHHHHHhhhhcCc---hhHHHHHH-----HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 188 RTAWEVLEQNLAITLLNRAKCLLFGLF---EHYKSLAN-----QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 188 ~~a~~~g~~~~A~~~~~rA~~l~~~~~---~~~~~La~-----~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
.+.+.+|+++.|+.++...++-.|... +....++. .+-..-+.++..|| +..++..+...+++ .+=
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD---~~~ai~~i~~llEi---~~W 187 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD---CQNAIEMITHLLEI---QPW 187 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc---hhhHHHHHHHHHhc---Ccc
Confidence 788899999999999999999888522 33333332 23344667777888 99999999999998 442
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+ +..++..+.||..-|+..+|+.=+..+.+. ...+..+.|--..+++..|+...++.+++..
T Consensus 188 d--------------a~l~~~Rakc~i~~~e~k~AI~Dlk~askL----s~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 188 D--------------ASLRQARAKCYIAEGEPKKAIHDLKQASKL----SQDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred h--------------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 224455599999999999999888888775 3455677788889999999999999999888
Q ss_pred hh-ccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 340 VE-IKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 340 l~-~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
+. +++- .. ++-+|.+... .+.++..+..+ .+.....++..-+.++ +..|..+.
T Consensus 250 LKldpdH--K~---Cf~~YKklkKv~K~les~e~~i------e~~~~t~cle~ge~vl--k~ep~~~~------------ 304 (504)
T KOG0624|consen 250 LKLDPDH--KL---CFPFYKKLKKVVKSLESAEQAI------EEKHWTECLEAGEKVL--KNEPEETM------------ 304 (504)
T ss_pred HccCcch--hh---HHHHHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHH--hcCCcccc------------
Confidence 73 3321 11 1222221111 11111111000 0000001111111111 11111100
Q ss_pred hhHHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC
Q 004720 418 VSDERVLALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL 496 (733)
Q Consensus 418 ~~~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~ 496 (733)
+..-.+. ....+-+.+++-+||.-++.+|.+.|.| +.++.-+|.+|+.-.+
T Consensus 305 ---------------------ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d-------v~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 305 ---------------------IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD-------VQVLCDRAEAYLGDEM 356 (504)
T ss_pred ---------------------eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH-------HHHHHHHHHHHhhhHH
Confidence 0000001 1233457799999999999999998744 5678999999999999
Q ss_pred HHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 004720 497 IDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFL-SLAAHEAVACQALSVAVAALSNL 574 (733)
Q Consensus 497 ~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL-~la~~~a~~~~~~~~a~~aL~~L 574 (733)
||.|+..|++|.+.+| +... .+.++.-+++.+... ..|+. ++++ .++.+....++|..++
T Consensus 357 YD~AI~dye~A~e~n~sn~~~--------------reGle~Akrlkkqs~-kRDYYKILGV---kRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRA--------------REGLERAKRLKKQSG-KRDYYKILGV---KRNASKQEITKAYRKL 418 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHH--------------HHHHHHHHHHHHHhc-cchHHHHhhh---cccccHHHHHHHHHHH
Confidence 9999999999999988 3321 123334445555544 35533 4444 3577788888999999
Q ss_pred HhhhcCCC
Q 004720 575 LNFYTSGK 582 (733)
Q Consensus 575 l~~~~~~~ 582 (733)
-++.-+|.
T Consensus 419 AqkWHPDN 426 (504)
T KOG0624|consen 419 AQKWHPDN 426 (504)
T ss_pred HHhcCCcc
Confidence 99876653
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.16 E-value=1.9e-10 Score=121.96 Aligned_cols=262 Identities=14% Similarity=0.069 Sum_probs=93.3
Q ss_pred HHHHHHhccCcHHHHHHHHHH-HHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHH
Q 004720 280 FISAIHLQKGEYESVIKCVRV-LREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYF 358 (733)
Q Consensus 280 ~La~~yl~~~~~ekAl~~l~~-a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~ 358 (733)
.+|.++...|++++|+.+++. +.... .+.++..+.+.+.+....+++++|+..+..++...+.....+...+.++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~---~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA---PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 359999999999999999954 44431 24566666777888888999999999999988555444444445555533
Q ss_pred HhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhH
Q 004720 359 QAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIA 438 (733)
Q Consensus 359 ~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~ 438 (733)
....+.|++.+...+. + ++ ++..+..-+.........+.+.+.+..-........
T Consensus 90 ~~~~~~A~~~~~~~~~----~--------------------~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYE----R--------------------DG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred cccccccccccccccc----c--------------------cc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence 2222455554443211 0 10 111110111111111222223333221000000111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHH
Q 004720 439 MHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 439 ~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~ 517 (733)
-..++...|..+.+.|++++|++.|+.++...|.+. .+...++..++..|+++++++.+....+..| ++...
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~-------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP-------DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H-------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH
Confidence 122333488889999999999999999999888653 3567788889999999999999988877766 66666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
...+.++...|++++|+..+++..+..+.+|.++..-+......|+.+.|......++.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77788899999999999999999998888888777777777788888888766665554
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=4.1e-07 Score=109.24 Aligned_cols=354 Identities=9% Similarity=-0.044 Sum_probs=216.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
.++-...++|+++.|+..+.++...+|..+...- .+...+...|+ +++|+.+++++.+ +.+.
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-------dll~l~~~~G~---~~~A~~~~eka~~-----p~n~--- 100 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-------DWLQIAGWAGR---DQEVIDVYERYQS-----SMNI--- 100 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-------HHHHHHHHcCC---cHHHHHHHHHhcc-----CCCC---
Confidence 3455666899999999999999999998653322 33333345578 8999999999982 2111
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
-...+..+|..|...|+|++|+..++.+.+. .+.+|.+++..+.++...+++++|+..+..++...+
T Consensus 101 ---------~~~~llalA~ly~~~gdyd~Aiely~kaL~~----dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 101 ---------SSRGLASAARAYRNEKRWDQALALWQSSLKK----DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence 1125566688999999999999999999986 466788777667888899999999999998885444
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCch-HHHHHH---HHHHhhc-------CCCCCc---chHHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVS-AKAAVR---MAHRVAG-------DEGDGV---SEAAVKL 409 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~-~~~a~~---~l~~~l~-------~~~sp~---~~~~l~~ 409 (733)
. ...++..+.++..... ..+++.+++++. .+|+ ...... ++.+.=. ++..|+ ..+...-
T Consensus 168 ~-~~~~l~layL~~~~~~~~~AL~~~ekll~-----~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 168 T-VQNYMTLSYLNRATDRNYDALQASSEAVR-----LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred c-hHHHHHHHHHHHhcchHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 3 2222333333322112 346666665532 2232 111111 1111100 000110 0000000
Q ss_pred HHHHHHHhh---------hHHH---HHHHhhcc-hh-------HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 410 RAKAVAELV---------SDER---VLALFVGD-AA-------AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 410 ka~~l~~l~---------~~e~---v~~~~~g~-~~-------~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
....+.+++ ..++ +...+... .+ +........+.-+.--.+.+.|++.++++-|+.--..
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 000000000 0000 00001000 00 0011111223334556677889999999999875421
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 470 LPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-------NIASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 470 ~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-------~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
-..- |+ -+....|-.|+.+++.++|..+|..++.-+| ....+.-+|-.++..+++++|...++.+..
T Consensus 322 ~~~~----P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 322 GYKM----PD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred CCCC----CH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 1000 22 3578899999999999999999999987653 233356789999999999999999999998
Q ss_pred ccC------------CChH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 543 CLD------------FTTD---FLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 543 ~~~------------~~~~---lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
..+ .+|| ...+.++...-.|+.+.|++.|+.++..-+.+
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n 449 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN 449 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 443 1344 44445566667899999999999999854443
No 56
>PLN03077 Protein ECB2; Provisional
Probab=99.13 E-value=1.4e-07 Score=115.72 Aligned_cols=320 Identities=12% Similarity=0.036 Sum_probs=178.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh--hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCL--LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l--~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
...+.+.|++++|+.++++.... .|+.. .|..+=..+.+.|+ ++++...++.+.+. +...
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~--------t~~~ll~a~~~~g~---~~~a~~l~~~~~~~---g~~~---- 422 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEI--------TIASVLSACACLGD---LDVGVKLHELAERK---GLIS---- 422 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCce--------eHHHHHHHHhccch---HHHHHHHHHHHHHh---CCCc----
Confidence 44555666666666666655432 22211 11112123334555 66666666555543 2100
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
-..++..|...|.+.|++++|.+.++.+.. .+...+...+..+.+.|++++|+..+..|+....
T Consensus 423 ---------~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~ 486 (857)
T PLN03077 423 ---------YVVVANALIEMYSKCKCIDKALEVFHNIPE-------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486 (857)
T ss_pred ---------chHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 012556666777777777777766665533 2334455556666667777777777766653322
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERV 423 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v 423 (733)
.....+.+.+..+...+. +.+.+....++..-+ .++....-.+++-+ .+....+..
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~---~~~~~~~naLi~~y--------------------~k~G~~~~A 543 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGI---GFDGFLPNALLDLY--------------------VRCGRMNYA 543 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC---CccceechHHHHHH--------------------HHcCCHHHH
Confidence 222233444444443333 223232222211100 00000001111111 111112223
Q ss_pred HHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhc--cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHH
Q 004720 424 LALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSML--YLPFDVENRILRAKSFRVLCLCYLGLSLIDRA 500 (733)
Q Consensus 424 ~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~--~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A 500 (733)
...|... .-....|| ....+.+.|++++|++.|+.-.. +.|.. ..|..+..+|.+.|.+++|
T Consensus 544 ~~~f~~~-------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~--------~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 544 WNQFNSH-------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE--------VTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHhc-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc--------ccHHHHHHHHhhcChHHHH
Confidence 3333311 11234577 66788899999999999998654 33432 2467777889999999999
Q ss_pred HHHHHHHHhh---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 501 QEYITEAEKL---EPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 501 ~e~~~~A~~l---dp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.++++++.+. .|++.++..+...+.+.|+.++|.+.++.|.- .+ ++.....-..-+...++.+.+..+.+.+++.
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~-~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI-TP-DPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999998743 56777888899999999999999999998842 11 2222222222335588999999999999985
Q ss_pred hcC
Q 004720 578 YTS 580 (733)
Q Consensus 578 ~~~ 580 (733)
-+.
T Consensus 687 ~p~ 689 (857)
T PLN03077 687 DPN 689 (857)
T ss_pred CCC
Confidence 433
No 57
>PLN03077 Protein ECB2; Provisional
Probab=99.12 E-value=2.1e-07 Score=114.10 Aligned_cols=356 Identities=13% Similarity=0.073 Sum_probs=202.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
...+.+.|++++|+..+.+...... .|+. ..|..+-..+...|+ .+.+...+....+. +.. +
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~-~Pd~-----~ty~~ll~a~~~~g~---~~~a~~l~~~~~~~---g~~-----~- 321 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSV-DPDL-----MTITSVISACELLGD---ERLGREMHGYVVKT---GFA-----V- 321 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC-CCCh-----hHHHHHHHHHHhcCC---hHHHHHHHHHHHHh---CCc-----c-
Confidence 3455677777777777777664321 1211 113333334445566 66666666555443 210 0
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC-C
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG-I 345 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~ 345 (733)
-..++..|...|.+.|++++|.+.++.+.. .++..+...+..|.+.|++++|+..+..|....- .
T Consensus 322 -------d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 322 -------DVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred -------chHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 123677888888888888888888887643 3455667777888888889988888887763322 2
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
....+.+.+..+...+. +.|.+.+..+... + ..++......+++-+.. ....+.+.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~--g-~~~~~~~~n~Li~~y~k--------------------~g~~~~A~ 444 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERK--G-LISYVVVANALIEMYSK--------------------CKCIDKAL 444 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHh--C-CCcchHHHHHHHHHHHH--------------------cCCHHHHH
Confidence 22334455555555544 4555554433211 0 11111222222232221 11112222
Q ss_pred HHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhh-------------------------
Q 004720 425 ALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRI------------------------- 478 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~------------------------- 478 (733)
++|..-.. + ....|+ ....+.+.|++++|++.|+..+.-.++|.....
T Consensus 445 ~vf~~m~~-~-----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 445 EVFHNIPE-K-----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHhCCC-C-----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 33321100 0 123455 566778889999999999887642222211000
Q ss_pred ---hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH---HHH
Q 004720 479 ---LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD---FLS 552 (733)
Q Consensus 479 ---~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~---lL~ 552 (733)
....++..+...|.+.|++++|.+.|+++ .|++.+...+...|.+.|+.++|++.++.|.... ..|| +..
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ 594 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFIS 594 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHH
Confidence 00112345567888889999999888876 5588888888889999999999999999998743 3343 333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 004720 553 LAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMK 614 (733)
Q Consensus 553 la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~ 614 (733)
+ ..-+.+.|..+.+...++.+.+.+.-. |. +..+-|+|.++.+ .|..++..+.++
T Consensus 595 l-l~a~~~~g~v~ea~~~f~~M~~~~gi~---P~--~~~y~~lv~~l~r-~G~~~eA~~~~~ 649 (857)
T PLN03077 595 L-LCACSRSGMVTQGLEYFHSMEEKYSIT---PN--LKHYACVVDLLGR-AGKLTEAYNFIN 649 (857)
T ss_pred H-HHHHhhcChHHHHHHHHHHHHHHhCCC---Cc--hHHHHHHHHHHHh-CCCHHHHHHHHH
Confidence 3 234556788888888888887544332 32 1334456666543 244444444433
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.07 E-value=1.3e-06 Score=101.16 Aligned_cols=316 Identities=14% Similarity=0.050 Sum_probs=199.4
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
.+...+...+.+|+ +++|...+.+++.. +|.+. ..|..||.+|-+.|+.+||+.+--++-
T Consensus 141 ~ll~eAN~lfarg~---~eeA~~i~~EvIkq---dp~~~--------------~ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 141 QLLGEANNLFARGD---LEEAEEILMEVIKQ---DPRNP--------------IAYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHh---Cccch--------------hhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45556677788899 99999999988887 65332 278899999999999999998865554
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCC
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~ 381 (733)
-. ++.++.-+..-.....+.|..++|+-++.+.|.-.|..-.+...=..+|.+++. ..|.+++..++. .+.
T Consensus 201 HL----~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~----~~p 272 (895)
T KOG2076|consen 201 HL----NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ----LDP 272 (895)
T ss_pred hc----CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh----hCC
Confidence 43 456667778888888899999999999999995445444555566777877776 677777776542 111
Q ss_pred ch-----HHHHHHHHHHhhcCCCCCcchHHH-------------------HHHHHHHHHhhhHHHHHHHhh-cch--h--
Q 004720 382 VS-----AKAAVRMAHRVAGDEGDGVSEAAV-------------------KLRAKAVAELVSDERVLALFV-GDA--A-- 432 (733)
Q Consensus 382 ~~-----~~~a~~~l~~~l~~~~sp~~~~~l-------------------~~ka~~l~~l~~~e~v~~~~~-g~~--~-- 432 (733)
|. ......+++-|.. ..+...++ .--+.++.+....+.+...+. +.. .
T Consensus 273 ~~d~er~~d~i~~~~~~~~~---~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFIT---HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred chhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 21 1122222333321 00000000 000000000011111111111 000 0
Q ss_pred ---------------------HHHhhHHHHH-HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHH
Q 004720 433 ---------------------AKERIAMHAV-LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLC 490 (733)
Q Consensus 433 ---------------------~~~~~~~~~l-lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~c 490 (733)
+++.+....+ .-.-+-.+.+..+-.+|+.-+..--.+. ..+...++..++..
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~------~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW------VSDDVDLYLDLADA 423 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC------hhhhHHHHHHHHHH
Confidence 0001111111 1112233333333333333332211111 13567889999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHH
Q 004720 491 YLGLSLIDRAQEYITEAEKLEP--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAV 568 (733)
Q Consensus 491 yl~l~~~~~A~e~~~~A~~ldp--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~ 568 (733)
|...|+|+.|..++......++ +....+.++.+|...|.+++|+++|+++....+++.|..+--+.+-.+.|+.+.|.
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Confidence 9999999999999999888877 66777889999999999999999999999999988887666667888899999777
Q ss_pred HHHHHHH
Q 004720 569 AALSNLL 575 (733)
Q Consensus 569 ~aL~~Ll 575 (733)
.+|+.+.
T Consensus 504 EtL~~~~ 510 (895)
T KOG2076|consen 504 ETLEQII 510 (895)
T ss_pred HHHhccc
Confidence 7777665
No 59
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.05 E-value=2.5e-07 Score=110.84 Aligned_cols=263 Identities=11% Similarity=0.019 Sum_probs=165.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCchHHHHhHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK-GIPECIWVSAVE 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~-~~~~~~~ls~~~ 355 (733)
+|..+...|...|++++|+.+++.+.... -..+..++...+.++.+.|++++|.+.+..++... +....++..++.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSG---VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 68888888888898999988888886621 12233455667788888888888888887777433 334455666778
Q ss_pred HHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-HHHhhhHHHHHHHhhcchhH
Q 004720 356 AYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA-VAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 356 ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~-l~~l~~~e~v~~~~~g~~~~ 433 (733)
.|.+.+. +.|.+.++.+ ..++...+..++.-+.. .+.. .+|.. +.++... |
T Consensus 369 ~y~k~G~~~~A~~vf~~m-------~~~d~~t~n~lI~~y~~-~G~~-------~~A~~lf~~M~~~--------g---- 421 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRM-------PRKNLISWNALIAGYGN-HGRG-------TKAVEMFERMIAE--------G---- 421 (697)
T ss_pred HHHHCCCHHHHHHHHHhC-------CCCCeeeHHHHHHHHHH-cCCH-------HHHHHHHHHHHHh--------C----
Confidence 8877766 5666655533 11222223333333321 1111 11111 1121110 0
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q 004720 434 KERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN 513 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~ 513 (733)
..+-...+-.....+.+.|++++|.++|+...+.++-. .....|..+...|.+.|++++|.+.++++ ...|+
T Consensus 422 --~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~-----p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 422 --VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK-----PRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred --CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-----CCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 01111112224566788999999999998876432211 11235778888999999999999998875 34566
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 514 IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 514 ~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
..+.-.+...+...|+.+.|.+.++.+....+.++....+.+....+.|+.+.|.+.++.+-+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 6666667777888899999999988888776655543344456667788999998888877763
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.9e-07 Score=98.66 Aligned_cols=285 Identities=13% Similarity=0.116 Sum_probs=188.5
Q ss_pred HHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC--cHHHHHHHHHHHH
Q 004720 225 LTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG--EYESVIKCVRVLR 302 (733)
Q Consensus 225 ~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~--~~ekAl~~l~~a~ 302 (733)
.+.+..+++.|+ ++.|+..| +++++.. .+ .....-.+|+..|+-+| +|-.|..+-+.+.
T Consensus 423 i~ka~~~lk~~d---~~~aieil----kv~~~kd--nk----------~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 423 INKAGELLKNGD---IEGAIEIL----KVFEKKD--NK----------TASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred hhHHHHHHhccC---HHHHHHHH----HHHHhcc--ch----------hhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 355668889999 88888543 3444321 11 11224456666665544 7888888888888
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCC
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~ 381 (733)
.+ .-.+|..+..++.+.+..|++|+|.+.++..+.+...-.....+++-.+...++ +.|++++-++--.++..
T Consensus 484 n~----dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn-- 557 (840)
T KOG2003|consen 484 NI----DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-- 557 (840)
T ss_pred cc----cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--
Confidence 86 356788888999999999999999999988876543222223355555655555 67777766542222211
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 004720 382 VSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAE 461 (733)
Q Consensus 382 ~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~ 461 (733)
...-+.+.+.+- -+...-..++.+. +.-.-...-..+|-+.|..|-+.|+-.+|.+
T Consensus 558 --~evl~qianiye--------------------~led~aqaie~~~--q~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 558 --AEVLVQIANIYE--------------------LLEDPAQAIELLM--QANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred --HHHHHHHHHHHH--------------------HhhCHHHHHHHHH--HhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 011111111110 0000000011110 0000111223455568889999999999999
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
+|-.+-.++|.+-+ ..--++..|+...-.++|+.++++|--+.| ...-++..+.+.-+.||+++|...|+.+
T Consensus 614 ~~ydsyryfp~nie-------~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 614 CHYDSYRYFPCNIE-------TIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhcccccCcchH-------HHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999997753 346689999999999999999999999999 6778888899999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHHHcCCHH
Q 004720 541 TICLDFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 541 ~~~~~~~~~lL~la~~~a~~~~~~~ 565 (733)
-.-.+.+.|.|..-+.+|-..|-.+
T Consensus 687 hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 687 HRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHhCccchHHHHHHHHHhccccchh
Confidence 9877777887776666665555443
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-08 Score=112.24 Aligned_cols=245 Identities=15% Similarity=0.113 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..+-+++.+.|+..+=..+--+..+..|..|- ..+..|.-++.-|+ +++|.++|.+|-.+ ++..
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~-------sW~aVg~YYl~i~k---~seARry~SKat~l---D~~f 345 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL-------SWFAVGCYYLMIGK---YSEARRYFSKATTL---DPTF 345 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc-------chhhHHHHHHHhcC---cHHHHHHHHHHhhc---Cccc
Confidence 45666667888999988888888888888887553 26777877788888 89999999998887 4422
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
++ .|...|..|...++.|+|+.||..+-+..+ +.|-..+|+-++ +...+++.-|.+.+...+
T Consensus 346 ---gp-----------aWl~fghsfa~e~EhdQAmaaY~tAarl~~---G~hlP~LYlgme-y~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 346 ---GP-----------AWLAFGHSFAGEGEHDQAMAAYFTAARLMP---GCHLPSLYLGME-YMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred ---cH-----------HHHHHhHHhhhcchHHHHHHHHHHHHHhcc---CCcchHHHHHHH-HHHhccHHHHHHHHHHHH
Confidence 22 688888888888899999999888877542 233333344433 445788888888887777
Q ss_pred -hccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhh
Q 004720 341 -EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVS 419 (733)
Q Consensus 341 -~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~ 419 (733)
..|..|.-. ++.|.-.+. ..+...|.+.+... +.
T Consensus 408 ai~P~Dplv~------------~Elgvvay~----------~~~y~~A~~~f~~~-----------------l~------ 442 (611)
T KOG1173|consen 408 AIAPSDPLVL------------HELGVVAYT----------YEEYPEALKYFQKA-----------------LE------ 442 (611)
T ss_pred hcCCCcchhh------------hhhhheeeh----------HhhhHHHHHHHHHH-----------------HH------
Confidence 444333222 011111110 00001111111111 10
Q ss_pred HHHHHHHhhcchhHHHh-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 420 DERVLALFVGDAAAKER-IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 420 ~e~v~~~~~g~~~~~~~-~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
.+.+ ...+. .| +.++-|.|-.+-+.++|++|+.+|+++|...|.+. ..+..+|.||..+|+++
T Consensus 443 --~ik~------~~~e~~~w-~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~-------~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 443 --VIKS------VLNEKIFW-EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA-------STHASIGYIYHLLGNLD 506 (611)
T ss_pred --Hhhh------ccccccch-hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch-------hHHHHHHHHHHHhcChH
Confidence 0000 00011 23 33344799999999999999999999999988663 56889999999999999
Q ss_pred HHHHHHHHHHhhCC-ChHHH
Q 004720 499 RAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 499 ~A~e~~~~A~~ldp-~~~t~ 517 (733)
+|+++|++|+.++| ++.+.
T Consensus 507 ~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 507 KAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred HHHHHHHHHHhcCCccHHHH
Confidence 99999999999999 65443
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.7e-07 Score=98.63 Aligned_cols=344 Identities=18% Similarity=0.088 Sum_probs=207.6
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+-.-|...+..|| |++|+.+|..|+.+ +|.++- .+.+...+|...++|++|++=-.....
T Consensus 5 ~k~kgnaa~s~~d---~~~ai~~~t~ai~l---~p~nhv--------------lySnrsaa~a~~~~~~~al~da~k~~~ 64 (539)
T KOG0548|consen 5 LKEKGNAAFSSGD---FETAIRLFTEAIML---SPTNHV--------------LYSNRSAAYASLGSYEKALKDATKTRR 64 (539)
T ss_pred HHHHHHhhccccc---HHHHHHHHHHHHcc---CCCccc--------------hhcchHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567889999999 99999999999999 665431 355668899999999999976666665
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch----hhhHHHHHHH-------
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG----TAGAETAKGV------- 372 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~----~~a~~~lk~~------- 372 (733)
. ++.+|.++.-++-.+..+|+|++|+..+..-+...+...-+.-+....+..... -...++..++
T Consensus 65 l----~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 65 L----NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN 140 (539)
T ss_pred c----CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh
Confidence 5 688999999999999999999999999999887766666665555555521100 0001111110
Q ss_pred -----------HHh----------hhccCCchHHHHHHHHHH-----hhc---C-CCCCcch------------HHHH-H
Q 004720 373 -----------FLG----------LLGRCHVSAKAAVRMAHR-----VAG---D-EGDGVSE------------AAVK-L 409 (733)
Q Consensus 373 -----------l~~----------ll~~~~~~~~~a~~~l~~-----~l~---~-~~sp~~~------------~~l~-~ 409 (733)
+.. ++. +|--..+..++.. +.. . ..++..+ +... .
T Consensus 141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~--d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 141 YSLSDPAYVKILEIIQKNPTSLKLYLN--DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhhccHHHHHHHHHhhcCcHhhhcccc--cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 000 000 0000000111000 000 0 0000000 0000 0
Q ss_pred H----HHHHHHhhh---HHH-HHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhH
Q 004720 410 R----AKAVAELVS---DER-VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRA 481 (733)
Q Consensus 410 k----a~~l~~l~~---~e~-v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~a 481 (733)
+ +...+.+.. .++ ....+.++...-+.....+.+-|.+..+|+.|+|.+++..+..+.+---....+....+
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence 0 000000000 000 01111111111122233344445677777777777777777776543222211223567
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CChHH-------------------------HHHHHHHHHhcCCHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLE--PNIAS-------------------------AFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ld--p~~~t-------------------------~~~~~ki~l~~gd~e~Al 534 (733)
+++-.++..|.+.++++.|+.+|++++.-. |+..+ ....+.-+.+.||+..|+
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 777788889999999999999999986542 22211 224566677889999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHH
Q 004720 535 NQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTIL 599 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~ 599 (733)
..|..+.+-.+.++.+.+--+.--.+.++.+.+++..+..+++ + |.-+..-+|..+.+.
T Consensus 379 ~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~---p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 379 KHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---D---PNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---C---chHHHHHHHHHHHHH
Confidence 9999988887777777766655566788999998888888884 4 666677778766654
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=8.3e-08 Score=102.89 Aligned_cols=217 Identities=11% Similarity=-0.019 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA 319 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk 319 (733)
.+.++.-+.+++.- .+.+ .+.++..+..+|.+|...|++++|+..++.+.+. ++.+|.+++..
T Consensus 42 ~e~~i~~~~~~l~~---~~~~----------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~l 104 (296)
T PRK11189 42 QEVILARLNQILAS---RDLT----------DEERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYL 104 (296)
T ss_pred HHHHHHHHHHHHcc---ccCC----------cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHH
Confidence 67788777777754 2211 1234568999999999999999999999999886 46788899999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCC
Q 004720 320 MKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDE 398 (733)
Q Consensus 320 ~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~ 398 (733)
+.++...|++++|+..+...+...|.....+.+.+.+|...++ +.|++.++ +++ +
T Consensus 105 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~----------------------~al--~ 160 (296)
T PRK11189 105 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL----------------------AFY--Q 160 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH----------------------HHH--H
Confidence 9999999999999999999986666566666666666655544 44444444 444 4
Q ss_pred CCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhh
Q 004720 399 GDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRI 478 (733)
Q Consensus 399 ~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~ 478 (733)
..|+++. ..+|. ......+++++|++.|..+....+.+.
T Consensus 161 ~~P~~~~-----------------------------------~~~~~--~l~~~~~~~~~A~~~l~~~~~~~~~~~---- 199 (296)
T PRK11189 161 DDPNDPY-----------------------------------RALWL--YLAESKLDPKQAKENLKQRYEKLDKEQ---- 199 (296)
T ss_pred hCCCCHH-----------------------------------HHHHH--HHHHccCCHHHHHHHHHHHHhhCCccc----
Confidence 4554421 02332 223456889999999988764332221
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHH-------HhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEA-------EKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A-------~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
...+.+++.+|+++.+ +.+..+ .+++| ...+++++.+++.+.|++++|+.+|+......+
T Consensus 200 ------~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 200 ------WGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ------cHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1135666667776544 233333 35566 567899999999999999999999999988753
No 64
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.9e-09 Score=111.28 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
|.++|+.+.+.++|++|++.|+.|+.+.|.| +-.|.|+|.+|.+||+|+.|+++|+.|+++|| +..++-.+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3459999999999999999999999998855 56899999999999999999999999999999 677777899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
.+|.-.|++++|++.|++...+.+.++
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 999999999999999999988876555
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.99 E-value=8.8e-08 Score=98.66 Aligned_cols=190 Identities=18% Similarity=0.102 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
..-+..+++.|..++..|+ +++|+..|++++.. .|.+. ....++..+|.+|...|++++|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~~~~~---~p~~~-----------~~~~a~~~la~~~~~~~~~~~A~~~ 92 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGD---YTEAIKYFEALESR---YPFSP-----------YAEQAQLDLAYAYYKSGDYAEAIAA 92 (235)
T ss_pred cCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCch-----------hHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3455679999999999999 99999999999887 44221 1234678899999999999999999
Q ss_pred HHHHHccCCCCCCCCCc---HHHHHHHHHHhc--------CChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhH
Q 004720 298 VRVLREGSFDGGDHHAS---LPVLAMKAWLGL--------GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGA 366 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~---~~~lk~~il~~~--------g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~ 366 (733)
++.+.... +.+|. ++++.+.++... |++++|+..+...+...|
T Consensus 93 ~~~~l~~~----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---------------------- 146 (235)
T TIGR03302 93 ADRFIRLH----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP---------------------- 146 (235)
T ss_pred HHHHHHHC----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC----------------------
Confidence 99988753 44554 567777777765 455566666555543221
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-HHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA-VAELVSDERVLALFVGDAAAKERIAMHAVLWN 445 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~-l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~ 445 (733)
++.... ++.. +..... ......+.
T Consensus 147 -----------------------------------~~~~~~--~a~~~~~~~~~------------------~~~~~~~~ 171 (235)
T TIGR03302 147 -----------------------------------NSEYAP--DAKKRMDYLRN------------------RLAGKELY 171 (235)
T ss_pred -----------------------------------CChhHH--HHHHHHHHHHH------------------HHHHHHHH
Confidence 111100 0000 000000 00001234
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
.|..+++.|+|++|+.+|+.++..+|.+ +..++.+.+++.+|.++|++++|.++++....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDT----PATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888999999999999999999988865 36688999999999999999999998876544
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.6e-07 Score=98.59 Aligned_cols=198 Identities=14% Similarity=0.092 Sum_probs=131.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHH
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAY 357 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly 357 (733)
|..-+......++|++|+.+.++.... ++.+..++.+|++++...|++.+|+-.++......|-....|-.++..|
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDS----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhcc----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 444455556667899999999988875 5667788999999999999999999999988766666777788888878
Q ss_pred HHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHH-HHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 358 FQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMA-HRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 358 ~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l-~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
.-.+. ..|....+.++.. .+....+..++ ..+. --+|.. ..|++.+.+. . +. .+
T Consensus 379 LA~~~~kEA~~~An~~~~~-----~~~sA~~LtL~g~~V~--~~dp~~----rEKAKkf~ek-----~---L~-----~~ 434 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRL-----FQNSARSLTLFGTLVL--FPDPRM----REKAKKFAEK-----S---LK-----IN 434 (564)
T ss_pred HhhchHHHHHHHHHHHHHH-----hhcchhhhhhhcceee--ccCchh----HHHHHHHHHh-----h---hc-----cC
Confidence 76555 4444444433221 11111122222 1111 011111 2343333220 0 00 00
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
-.-+. ..-..+..+.-.|.|.+++...+..|..+|.. .+++.+|..+...+++.+|.++|..|+++||
T Consensus 435 P~Y~~-AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 435 PIYTP-AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred CccHH-HHHHHHHHHHhhCccchHHHHHHHHHhhcccc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 00000 01126777889999999999999999988855 3789999999999999999999999999999
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3.6e-08 Score=102.17 Aligned_cols=270 Identities=9% Similarity=0.019 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch-hHHHHHHHHH--HHhHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE-HYKSLANQYL--TFAKSALSKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~-~~~~La~~~~--~~G~~~~~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
+|.++.+. .+|.+.|-.......++....|. .+.-.-+=+| ++|++++..|- +.+|.+.|+++++-.+
T Consensus 184 LFey~fyh------enDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm---~r~AekqlqssL~q~~ 254 (478)
T KOG1129|consen 184 LFEYLFYH------ENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGM---PRRAEKQLQSSLTQFP 254 (478)
T ss_pred HHHHHHHh------hhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcC---hhhhHHHHHHHhhcCC
Confidence 55655433 45556665555544444332111 1111122344 78999999999 9999999999998622
Q ss_pred cCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHH
Q 004720 256 KGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 256 ~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~ 335 (733)
- + .++..|+.+|-..++.+.|+..+..-...+ +.+.-...-..+|+...+++++|.+.
T Consensus 255 ~--------~----------dTfllLskvY~ridQP~~AL~~~~~gld~f----P~~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 255 H--------P----------DTFLLLSKVYQRIDQPERALLVIGEGLDSF----PFDVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred c--------h----------hHHHHHHHHHHHhccHHHHHHHHhhhhhcC----CchhhhhhhhHHHHHHHHhHHHHHHH
Confidence 1 1 178889999999999999999988776532 22222224456888899999999999
Q ss_pred HHHhhhccC-CchHH-HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 004720 336 LRGMVEIKG-IPECI-WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA 413 (733)
Q Consensus 336 l~~~l~~~~-~~~~~-~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~ 413 (733)
++..+.-.+ +.+.+ |+.. .-|+.++.+.|+.++++++. .....|
T Consensus 313 Yk~vlk~~~~nvEaiAcia~-~yfY~~~PE~AlryYRRiLq------------------------mG~~sp--------- 358 (478)
T KOG1129|consen 313 YKLVLKLHPINVEAIACIAV-GYFYDNNPEMALRYYRRILQ------------------------MGAQSP--------- 358 (478)
T ss_pred HHHHHhcCCccceeeeeeee-ccccCCChHHHHHHHHHHHH------------------------hcCCCh---------
Confidence 988884443 44444 2222 22333333555666653321 110011
Q ss_pred HHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh
Q 004720 414 VAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG 493 (733)
Q Consensus 414 l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~ 493 (733)
-++-|.|..++-.++|+-++--|+.++..-.++. ..+.+.+|++.+...
T Consensus 359 ---------------------------eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~----~aaDvWYNlg~vaV~ 407 (478)
T KOG1129|consen 359 ---------------------------ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG----QAADVWYNLGFVAVT 407 (478)
T ss_pred ---------------------------HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc----hhhhhhhccceeEEe
Confidence 1333688889999999999999999987655332 457899999999999
Q ss_pred CCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 494 LSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 494 l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.|++.-|...+.-|+..|| +-...-++.-+..++|+.++|...+...++..
T Consensus 408 iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 408 IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999 78888889999999999999999998887764
No 68
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.96 E-value=3.3e-05 Score=86.88 Aligned_cols=377 Identities=16% Similarity=0.058 Sum_probs=240.7
Q ss_pred hccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHH----
Q 004720 143 HDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYK---- 218 (733)
Q Consensus 143 ~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~---- 218 (733)
..+-+.+.|...+++|++.++. . +++.+ ++.+..-|..|...+.++.+..|..+..-.
T Consensus 387 VelE~~~darilL~rAveccp~--------s------~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCPQ--------S------MDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred HhccChHHHHHHHHHHHHhccc--------h------HHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 4556777799999999998862 0 22221 112444566777788888887776653211
Q ss_pred --------HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc-------chhhhhhhhcHHHHHHHHHH
Q 004720 219 --------SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEART-------REETTELKGLKFKTLRFISA 283 (733)
Q Consensus 219 --------~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~-------~~~~~~~~el~~~~l~~La~ 283 (733)
.+..-....|...+..... --.=-.||++|.+.-..+ ...+ --|...-++-+.++|..-+.
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv--~i~rdqWl~eAe~~e~ag--sv~TcQAIi~avigigvEeed~~~tw~~da~ 524 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGV--EINRDQWLKEAEACEDAG--SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQ 524 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcce--eecHHHHHHHHHHHhhcC--ChhhHHHHHHHHHhhccccchhHhHHhhhHH
Confidence 1111222334444444331 122345777777652221 0000 00011112334567777777
Q ss_pred HHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh-cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch
Q 004720 284 IHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG-LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 284 ~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~-~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
.....+.++=|...|..+++.+ +..-+. -+++.-+.+ .|.-++-...+++.+...+..+.+|+-.++.+...+.
T Consensus 525 ~~~k~~~~~carAVya~alqvf----p~k~sl-Wlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVF----PCKKSL-WLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhc----cchhHH-HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC
Confidence 7777777777777777777743 122222 333333333 3677777777788887778888888887777765544
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch--hHHHhhHHH
Q 004720 363 TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA--AAKERIAMH 440 (733)
Q Consensus 363 ~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~--~~~~~~~~~ 440 (733)
. .++..++...+ +..|...+.|+-..++.-+....++..++|..-. .+.+.-|
T Consensus 600 v---------------------~~ar~il~~af--~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~-- 654 (913)
T KOG0495|consen 600 V---------------------PAARVILDQAF--EANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVW-- 654 (913)
T ss_pred c---------------------HHHHHHHHHHH--HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhh--
Confidence 1 22233333333 4455444555444444344344455544444000 0112222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHH
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFL 519 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~ 519 (733)
.+.++..--.++.++|+.+++.+|..+| +.-|++-.+|..|-..++.+.|.+.|...++..| .+..-.+
T Consensus 655 ---mKs~~~er~ld~~eeA~rllEe~lk~fp-------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 655 ---MKSANLERYLDNVEEALRLLEEALKSFP-------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred ---HHHhHHHHHhhhHHHHHHHHHHHHHhCC-------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 2344445567899999999999999887 5569999999999999999999999999999999 7888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+.++--+.|..-+|...+++..--++.++.|-..+++.-++.|+.+.|...+.+-|+....+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999998887777778887788999999999999998888877755444
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=1.5e-06 Score=99.40 Aligned_cols=313 Identities=16% Similarity=0.080 Sum_probs=181.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh-hccCCchHHHHhHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV-EIKGIPECIWVSAVE 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l-~~~~~~~~~~ls~~~ 355 (733)
++...+.++.+.|++++|++.++...+.. ....+..-.++++++++|++++|...++.+| +||++. ..|-.+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I----~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~-~Yy~~L~~ 80 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQI----LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY-DYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHH
Confidence 44556888999999999999998766632 2445667999999999999999999999999 555443 33333333
Q ss_pred HHHHhch--hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 356 AYFQAAG--TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 356 ly~~~~~--~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
+..-... +...+.+..++..+..+. |......++.=.|+ .++.+..++.. -+.. .+.
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~-------~g~~F~~~~~~--------yl~~-----~l~ 139 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFL-------EGDEFKERLDE--------YLRP-----QLR 139 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccC-------CHHHHHHHHHH--------HHHH-----HHh
Confidence 3211100 112223333322222222 11111111111111 11111011000 0111 011
Q ss_pred HHhhHHHHHHHHHHHHHHh-cCCHH---HHHHHHHHhhcc----CCCC---chhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 434 KERIAMHAVLWNCASILFR-SKDYE---ASAEMFEKSMLY----LPFD---VENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k-~~~y~---~A~~~y~~aL~~----~~~~---~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
+.+++ ++..-...|+ ..+.. .-+.-|..++.- .+.+ .+.+...--+++.+|.+|..+|++++|.+
T Consensus 140 KgvPs----lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 140 KGVPS----LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred cCCch----HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 10110 0011111111 11111 111222223321 1111 11112233467999999999999999999
Q ss_pred HHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 503 YITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 503 ~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
++++|+...| .+..++..++|+.+.|++++|.++++....+...+.-+-+-|+-...++|..+.|++-+..... ...+
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr-~~~~ 294 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR-EDVD 294 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC-CCCC
Confidence 9999999999 8999999999999999999999999999998777777889999999999999999877766654 2212
Q ss_pred CCCchhHHHHHHHHHHHH-----HhhcCChhHHHHHHHHHHHHhhhc
Q 004720 582 KPMPTKEVVVLRTIVTIL-----TQETGNESEVLKYMKRAHARTSEI 623 (733)
Q Consensus 582 ~~~~~~~~~~lR~li~l~-----~~~~~~~~~~l~~~~~A~~~l~~~ 623 (733)
|..-+.=+-|.--++ ..+.|+....|+.|........+.
T Consensus 295 ---~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 295 ---PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred ---cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 332223223332222 133467777788877777766665
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=8.1e-08 Score=98.94 Aligned_cols=191 Identities=14% Similarity=0.052 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
-..+...+..|..++..|+++.|...|++++...|.- +. .-+.+...+.++...|+++.|+..++++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------~~-----~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------PY-----AEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hh-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456778899999999999999999999998765420 00 013455668888999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhc--------CCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh---hhhhhcHHHH
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSK--------NETNSLNDALKLMNEALELCEKGLGEARTREET---TELKGLKFKT 277 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~--------~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~---~~~~el~~~~ 277 (733)
..|..+.. ...++.+|.+++.. ++ +++|+..|+++++. .|.+....... ..........
T Consensus 99 ~~p~~~~~----~~a~~~~g~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~ 168 (235)
T TIGR03302 99 LHPNHPDA----DYAYYLRGLSNYNQIDRVDRDQTA---AREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGK 168 (235)
T ss_pred HCcCCCch----HHHHHHHHHHHHHhcccccCCHHH---HHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHH
Confidence 99986642 33577778887765 67 99999999999988 54432211000 0001111123
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
...+|..|+..|++++|+..++.+....++ .+..+..++..+.++.+.|++++|+..+..+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788999999999999999988875310 122345779999999999999999998776554
No 71
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.82 E-value=7.1e-07 Score=95.01 Aligned_cols=250 Identities=18% Similarity=0.133 Sum_probs=155.3
Q ss_pred hHHHHHHHHHHHhhhHHhc-----cCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHD-----LKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAI 200 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~-----~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~ 200 (733)
...++.++..++.+.+|++ ..+++.|...|++|.. .+...|++++|.
T Consensus 4 ~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~----------------------------~fk~~~~~~~A~ 55 (282)
T PF14938_consen 4 EELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAAN----------------------------CFKLAKDWEKAA 55 (282)
T ss_dssp HHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHH----------------------------HHHHTT-CHHHH
T ss_pred HHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHH----------------------------HHHHHhccchhH
Confidence 3556667777776544331 2367777777766654 445678899999
Q ss_pred HHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHH
Q 004720 201 TLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRF 280 (733)
Q Consensus 201 ~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~ 280 (733)
++|.+|.++..... .....+..|.+.|..+.+. + +++|+.+|++|.++..+.- . ...-++++..
T Consensus 56 ~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~---~~~Ai~~~~~A~~~y~~~G-~----------~~~aA~~~~~ 119 (282)
T PF14938_consen 56 EAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-D---PDEAIECYEKAIEIYREAG-R----------FSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHCT------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-C---HHHHHHHHHHHHHHHHhcC-c----------HHHHHHHHHH
Confidence 99999988765422 2234566677777776544 7 8999999999999866531 1 1233568889
Q ss_pred HHHHHhcc-CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHH
Q 004720 281 ISAIHLQK-GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQ 359 (733)
Q Consensus 281 La~~yl~~-~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~ 359 (733)
+|.+|-.. +++++|+++|+.+.... ..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y----------------------------------------------------~~ 147 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELY----------------------------------------------------EQ 147 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHH----------------------------------------------------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------------------------------HH
Confidence 99999888 89999998888775421 00
Q ss_pred hchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHH
Q 004720 360 AAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAM 439 (733)
Q Consensus 360 ~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~ 439 (733)
. +.+ . . .
T Consensus 148 e--------------------------------------~~~-~-----~-----------------------------a 154 (282)
T PF14938_consen 148 E--------------------------------------GSP-H-----S-----------------------------A 154 (282)
T ss_dssp T--------------------------------------T-H-H-----H-----------------------------H
T ss_pred C--------------------------------------CCh-h-----h-----------------------------H
Confidence 0 000 0 0 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHH
Q 004720 440 HAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAF 518 (733)
Q Consensus 440 ~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~ 518 (733)
...+.+.|..+.+.|+|++|++.|+......-.+...+...-+.+.+.+.||+..|++..|.+.+++....+| -..+.-
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 0011135677788999999999999977543322111123445678889999999999999999999999998 333322
Q ss_pred HH-----HHHHH--hcCCHHHHHHHHHHHHhcc
Q 004720 519 LK-----FKIYL--QKNDQEGAINQILAMTICL 544 (733)
Q Consensus 519 ~~-----~ki~l--~~gd~e~Al~~l~~~~~~~ 544 (733)
.. ...+- -...++.|+..|..+..+.
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 21 22221 1344678888887776663
No 72
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=8e-08 Score=91.79 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.++.|..+++.|+|++|++.|..++...|.+ ...+.++|.++..+|++++|++.|.++++++| ++...+.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4467999999999999999999999987754 46789999999999999999999999999999 999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
.++...|++++|+.++.......+.+++.....
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999888777755443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=2.5e-05 Score=85.42 Aligned_cols=312 Identities=14% Similarity=0.036 Sum_probs=186.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
..|..+...|+...|..-+.++....+...... ...+..|..+...|+ +++|..+++++++. .|.+.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~---~~~A~~~~~~~l~~---~P~~~--- 77 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGD---LPKALALLEQLLDD---YPRDL--- 77 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCC---HHHHHHHHHHHHHH---CCCcH---
Confidence 445666678889998888888887776544322 234556888888999 99999999999887 44221
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHH
Q 004720 265 EETTELKGLKFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~ 337 (733)
.++.. +..+.. .+..+.+...+... .+.+|. .....+.++...|++++|+..++
T Consensus 78 -----------~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 78 -----------LALKL-HLGAFGLGDFSGMRDHVARVLPLW-------APENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred -----------HHHHH-hHHHHHhcccccCchhHHHHHhcc-------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12222 333332 33444455444432 233444 33566678888899999888877
Q ss_pred HhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHh
Q 004720 338 GMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAEL 417 (733)
Q Consensus 338 ~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l 417 (733)
..+.. .|++..
T Consensus 139 ~al~~---------------------------------------------------------~p~~~~------------ 149 (355)
T cd05804 139 RALEL---------------------------------------------------------NPDDAW------------ 149 (355)
T ss_pred HHHhh---------------------------------------------------------CCCCcH------------
Confidence 55431 121110
Q ss_pred hhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCH
Q 004720 418 VSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLI 497 (733)
Q Consensus 418 ~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~ 497 (733)
.....|.++++.|++++|+.+|..++...|.+. ......+..++.+|+..|++
T Consensus 150 ------------------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~---~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 150 ------------------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS---MLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred ------------------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc---chhHHHHHHHHHHHHHCCCH
Confidence 111368889999999999999999998877532 23345678899999999999
Q ss_pred HHHHHHHHHHHhhCC--C-hHHH---HHHHHHHHhcCCHHHHHHH--HHHHH-hccCC--ChHHHHHHHHHHHHcCCHHH
Q 004720 498 DRAQEYITEAEKLEP--N-IASA---FLKFKIYLQKNDQEGAINQ--ILAMT-ICLDF--TTDFLSLAAHEAVACQALSV 566 (733)
Q Consensus 498 ~~A~e~~~~A~~ldp--~-~~t~---~~~~ki~l~~gd~e~Al~~--l~~~~-~~~~~--~~~lL~la~~~a~~~~~~~~ 566 (733)
++|...++++....| . .... ......+...|..+.+.+. +.... ...+. .+-.-...+......|+.+.
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 999999999976655 2 2211 1333444445543222221 11111 11011 11111123444556778888
Q ss_pred HHHHHHHHHhhhcCCCCCch-hHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcc
Q 004720 567 AVAALSNLLNFYTSGKPMPT-KEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIG 624 (733)
Q Consensus 567 a~~aL~~Ll~~~~~~~~~~~-~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~ 624 (733)
+...|+.+............ .....++-+--+.....|+.++.+..+..|.......|
T Consensus 283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIG 341 (355)
T ss_pred HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 88888887763322000011 01111111111123446888999999999998887775
No 74
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=7.2e-08 Score=93.92 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
...|+.+|+.|+|++|..-|..||...|.-.. ..++-+|.|+|.|.++++..+.|++.|.+|++++| +......++.
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 34899999999999999999999999986643 47889999999999999999999999999999999 8888888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC
Q 004720 523 IYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
+|-+...+++|++.|+++..+.+.
T Consensus 177 ayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcc
Confidence 999999999999999999988654
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=1.6e-05 Score=86.93 Aligned_cols=307 Identities=11% Similarity=-0.000 Sum_probs=182.4
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
.|..+...|++..|...+.++....+.-. ++ ......++..++..|+++.|...++++.+..|..+..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a- 79 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARA-----TE------RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA- 79 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCC-----CH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH-
Confidence 45666667888888777777776543110 11 1234457888899999999999999999998876522
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
+.. |..++..++ +..+.....++++.. .+.+. .....+..++.++...|++++|+..
T Consensus 80 ------~~~-~~~~~~~~~---~~~~~~~~~~~l~~~--~~~~~-----------~~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 80 ------LKL-HLGAFGLGD---FSGMRDHVARVLPLW--APENP-----------DYWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred ------HHH-hHHHHHhcc---cccCchhHHHHHhcc--CcCCC-----------CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 221 333333333 222333333333321 11111 1223566789999999999999999
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
++.+.+. .+.++......+.+++..|++++|+..+...+...+
T Consensus 137 ~~~al~~----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~--------------------------------- 179 (355)
T cd05804 137 ARRALEL----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD--------------------------------- 179 (355)
T ss_pred HHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC---------------------------------
Confidence 9999886 456788888999999999999999998775543110
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
.++ + ......|..|..+...|+++
T Consensus 180 ---------------------~~~-~----------------------------------~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 180 ---------------------CSS-M----------------------------------LRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred ---------------------CCc-c----------------------------------hhHHHHHHHHHHHHHCCCHH
Confidence 000 0 00113567899999999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHH-HH-HHHHHHHhCCCHHHHHH---HHHHHHhh-C-C-ChHHHHHHHHHHHhcCC
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKS-FR-VLCLCYLGLSLIDRAQE---YITEAEKL-E-P-NIASAFLKFKIYLQKND 529 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl-~r-~la~cyl~l~~~~~A~e---~~~~A~~l-d-p-~~~t~~~~~ki~l~~gd 529 (733)
+|+.+|+.++...|... ..... -+ .+...+...|..+.+.. ........ + + ..+.......+++..|+
T Consensus 204 ~A~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 204 AALAIYDTHIAPSAESD----PALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred HHHHHHHHHhccccCCC----hHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 99999999875444211 11111 11 22222333332222222 12221111 1 2 23444467888889999
Q ss_pred HHHHHHHHHHHHhccCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 530 QEGAINQILAMTICLDF---------TTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~---------~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.++|...++.+...... ...+..+-+..+...|+.+.|+..|...+.
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999888765432 111222233333445555555544444443
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.9e-07 Score=103.62 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=66.4
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
..++.|+.-+|.-.++-|+.-+|... ++.--+|..+...++ -..|+..|++++++ +|.+.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~ha-------eAW~~LG~~qaENE~---E~~ai~AL~rcl~L---dP~Nl------- 353 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHA-------EAWQKLGITQAENEN---EQNAISALRRCLEL---DPTNL------- 353 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHH-------HHHHHhhhHhhhccc---hHHHHHHHHHHHhc---CCccH-------
Confidence 45678888888888888887777533 356678888888877 68888888999888 66443
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
.++..||..|...|.-..|+++++.=.
T Consensus 354 -------eaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 354 -------EALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 278888888888887778888876543
No 77
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.6e-07 Score=101.00 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCC----Cchh----hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPF----DVEN----RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~----~~~~----~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
..|+.+|+.|+|..|..-|++++.+... +.+. -..+-.++.|++.||+++++|.+|++.|++++.++| |+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 4899999999999999999999875541 1111 123445789999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
..|.+.++++..|+++.|+..++++.+..+++-+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999999999999999999999877643
No 78
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.74 E-value=5.8e-07 Score=95.77 Aligned_cols=127 Identities=14% Similarity=0.122 Sum_probs=88.9
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
-|.-.++.|++..-..+|++|++.= -++...+-.+|+.-..+|...+||.+|+.+-.--+-+.....+ .
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG----------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-k 91 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG----------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-K 91 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc----------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-h
Confidence 4777788999999999999998741 1222234467777788888999999999875544443322111 1
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
.--|...-|+|..+--+|. |++|+.+..+-+++..+- ++ +-...+.+++|+++|...|
T Consensus 92 lGEAKssgNLGNtlKv~G~---fdeA~~cc~rhLd~areL-gD----------rv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGA---FDEALTCCFRHLDFAREL-GD----------RVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hccccccccccchhhhhcc---cchHHHHHHHHhHHHHHH-hH----------HHhhhHHHhhhhhhhhhcc
Confidence 1123457789999989999 999999999999985431 11 2234559999999998876
No 79
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=2.8e-08 Score=102.81 Aligned_cols=108 Identities=17% Similarity=0.079 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
+.....++.-+.-|+...+.++|+.|+.+|++|+++.|. + --|||+||+++.+.|.++.|++++.+
T Consensus 75 ~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~--------n------AVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 75 EEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT--------N------AVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------c------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 357788899999999999999999999999999999863 1 14889999999999999999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
|+.++|...+ .|-.+|..++..|+ |++|+..|++|+++ +|.+
T Consensus 141 Al~iDp~ysk-------ay~RLG~A~~~~gk---~~~A~~aykKaLel---dP~N 182 (304)
T KOG0553|consen 141 ALSIDPHYSK-------AYGRLGLAYLALGK---YEEAIEAYKKALEL---DPDN 182 (304)
T ss_pred HHhcChHHHH-------HHHHHHHHHHccCc---HHHHHHHHHhhhcc---CCCc
Confidence 9999997554 47788888889999 99999999999999 6644
No 80
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.73 E-value=3.3e-07 Score=97.61 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=152.3
Q ss_pred hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH--HHHHc--
Q 004720 228 AKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV--RVLRE-- 303 (733)
Q Consensus 228 G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l--~~a~~-- 303 (733)
|.-+.+.|+ +..-+.+|+.|++....+ . + ....++..|+++|.-.++|++|+++- ++...
T Consensus 24 GERLck~gd---craGv~ff~aA~qvGTeD---l---------~-tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~ 87 (639)
T KOG1130|consen 24 GERLCKMGD---CRAGVDFFKAALQVGTED---L---------S-TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL 87 (639)
T ss_pred HHHHHhccc---hhhhHHHHHHHHHhcchH---H---------H-HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH
Confidence 667889999 999999999999983222 1 1 23348889999999999999999873 33322
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh-ccCCchH-----HHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE-IKGIPEC-----IWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~-~~~~~~~-----~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
+...++.-.. .-..+.++...|+||+|+-...+-+. ......- .+.++++.|-..+...+.+.-...
T Consensus 88 lgdklGEAKs--sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~----- 160 (639)
T KOG1130|consen 88 LGDKLGEAKS--SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK----- 160 (639)
T ss_pred hcchhccccc--cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc-----
Confidence 2111122222 24456677779999999988654331 0000000 122333333222221111111000
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
+.+. ......++..+. .++....+ .+...+ +.+.-..+=|.|+.||-.|+|+
T Consensus 161 g~f~---~ev~~al~~Av~---------fy~eNL~l------~~~lgD----------r~aqGRa~GnLGNTyYlLGdf~ 212 (639)
T KOG1130|consen 161 GAFN---AEVTSALENAVK---------FYMENLEL------SEKLGD----------RLAQGRAYGNLGNTYYLLGDFD 212 (639)
T ss_pred cccc---HHHHHHHHHHHH---------HHHHHHHH------HHHhhh----------HHhhcchhcccCceeeeeccHH
Confidence 0011 011111111100 00011000 011111 1111112335899999999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CC--ChHHHHHHHHHHHhcCCH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-----EP--NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-----dp--~~~t~~~~~ki~l~~gd~ 530 (733)
.|+.+-+.=|++-..- +++...-..+.|++.||+-+|+++-|+++|++++.+ +. +.-..|.+...|....++
T Consensus 213 ~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 213 QAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH
Confidence 9999999877654211 113344567899999999999999999999987655 22 455668889999999999
Q ss_pred HHHHHHHHHHHh
Q 004720 531 EGAINQILAMTI 542 (733)
Q Consensus 531 e~Al~~l~~~~~ 542 (733)
++||.+..+=..
T Consensus 292 ~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 292 QKAITYHQRHLA 303 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999988765433
No 81
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.72 E-value=7.6e-06 Score=91.82 Aligned_cols=342 Identities=13% Similarity=0.085 Sum_probs=213.3
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHH--------HHhhccCCC-hHHHHHHH-----------HHHHHHHHHHHHccCH
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVS--------KLDISRISD-SDERKLLL-----------DINIARSRTAWEVLEQ 196 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~--------~~~~~~~~~-~~e~~~~l-----------~~l~~rA~~a~~~g~~ 196 (733)
..+..|.+-+-++=|..+|-.|+...+ ..++..+++ -++...+| .+.+.-|...|..||.
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv 600 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDV 600 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCc
Confidence 344567778888888899988886544 122223222 12222111 2555668899999999
Q ss_pred HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHH
Q 004720 197 NLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFK 276 (733)
Q Consensus 197 ~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~ 276 (733)
-.|...+.+|.+..|.+.+ .-++. -+..+.... ++.|..+|.+|... .+.. +
T Consensus 601 ~~ar~il~~af~~~pnsee--iwlaa-----vKle~en~e---~eraR~llakar~~---sgTe---------------R 652 (913)
T KOG0495|consen 601 PAARVILDQAFEANPNSEE--IWLAA-----VKLEFENDE---LERARDLLAKARSI---SGTE---------------R 652 (913)
T ss_pred HHHHHHHHHHHHhCCCcHH--HHHHH-----HHHhhcccc---HHHHHHHHHHHhcc---CCcc---------------h
Confidence 9999999999998887443 12222 233345555 99999999999886 3211 2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
+|.--+..--.+|+.++|+.+++.+.+.+ +.++..+.+++.|+.+.++.+.|...+..-++..|....+|+++.++
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~f----p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSF----PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhC----CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 55544555556688999999999999874 57788889999999999999999999988887778888889888886
Q ss_pred HHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh--hHHHHHHHhhcchhHH
Q 004720 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV--SDERVLALFVGDAAAK 434 (733)
Q Consensus 357 y~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~--~~e~v~~~~~g~~~~~ 434 (733)
=...+. +.- |..++++-. ...|++...|..... .++. ..+.+..... ..+.
T Consensus 729 eEk~~~---~~r------------------AR~ildrar--lkNPk~~~lwle~Ir--~ElR~gn~~~a~~lma-kALQ- 781 (913)
T KOG0495|consen 729 EEKDGQ---LVR------------------ARSILDRAR--LKNPKNALLWLESIR--MELRAGNKEQAELLMA-KALQ- 781 (913)
T ss_pred HHHhcc---hhh------------------HHHHHHHHH--hcCCCcchhHHHHHH--HHHHcCCHHHHHHHHH-HHHH-
Confidence 544432 122 222333333 234444333321111 1111 0111111000 0000
Q ss_pred HhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 435 ERIAMHAVLWNCASILFRSK-DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~~-~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.=+-..+||-.+--.+..+ +-..+++..+++-+ | ..++...+.-+-.-.++++|.+-|.+|.+.||
T Consensus 782 -ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~----d-------phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 782 -ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH----D-------PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred -hCCccchhHHHHHHhccCcccchHHHHHHHhccC----C-------chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 0112347777666665443 33344444444321 2 23556666777778889999999999999998
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
+-.+--..|+.+++-|..+.-.+.+.....+.+..-+
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence 5555556677778888888888888888777654333
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=4.7e-07 Score=100.53 Aligned_cols=233 Identities=11% Similarity=0.084 Sum_probs=149.3
Q ss_pred HHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 225 LTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 225 ~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
|..|..+++.|+ ..+|+-.|+.|..- +|. .+.+|..||.++.+.++=..|+.++..+.+.
T Consensus 289 f~eG~~lm~nG~---L~~A~LafEAAVkq---dP~--------------haeAW~~LG~~qaENE~E~~ai~AL~rcl~L 348 (579)
T KOG1125|consen 289 FKEGCNLMKNGD---LSEAALAFEAAVKQ---DPQ--------------HAEAWQKLGITQAENENEQNAISALRRCLEL 348 (579)
T ss_pred HHHHHHHHhcCC---chHHHHHHHHHHhh---ChH--------------HHHHHHHhhhHhhhccchHHHHHHHHHHHhc
Confidence 446778888888 88888888887765 442 2448888888888888777788888888774
Q ss_pred CCCCCCCCCcHH--HHHH-HHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCC
Q 004720 305 SFDGGDHHASLP--VLAM-KAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 305 ~~~~~~~~p~~~--~lk~-~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~ 381 (733)
+|.-. .+.+ -.|.-.|--.+|+..+..=|.+.+..... . ....
T Consensus 349 -------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l--------------------~-------~a~~ 394 (579)
T KOG1125|consen 349 -------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHL--------------------V-------SAGE 394 (579)
T ss_pred -------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhc--------------------c-------ccCc
Confidence 44432 2222 22223344556777766655432211100 0 0000
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhh--cchhHH-HhhHHHHHHHHHHHHHHhcCCHHH
Q 004720 382 VSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFV--GDAAAK-ERIAMHAVLWNCASILFRSKDYEA 458 (733)
Q Consensus 382 ~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~--g~~~~~-~~~~~~~llW~~g~~~~k~~~y~~ 458 (733)
+. ++-. .+++.+..-+ . .|.+.|- +++.+. .-.-++.. .|-.++-.|+|+.
T Consensus 395 ~~---------~~~~-~~s~~~~~~l-~------------~i~~~fLeaa~~~~~~~DpdvQ~~---LGVLy~ls~efdr 448 (579)
T KOG1125|consen 395 NE---------DFEN-TKSFLDSSHL-A------------HIQELFLEAARQLPTKIDPDVQSG---LGVLYNLSGEFDR 448 (579)
T ss_pred cc---------cccC-CcCCCCHHHH-H------------HHHHHHHHHHHhCCCCCChhHHhh---hHHHHhcchHHHH
Confidence 00 0000 0011111111 0 0111111 111110 11122223 5888999999999
Q ss_pred HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 459 SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 459 A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
|++.|+.||...|.| ..+..+||....+-.+..+|+++|++|+++.| .+..+|.+.-.++..|.|++|++++
T Consensus 449 aiDcf~~AL~v~Pnd-------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 449 AVDCFEAALQVKPND-------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHhcCCch-------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999987755 46889999999999999999999999999999 8999999999999999999999988
Q ss_pred HHHHhcc
Q 004720 538 LAMTICL 544 (733)
Q Consensus 538 ~~~~~~~ 544 (733)
-+.....
T Consensus 522 L~AL~mq 528 (579)
T KOG1125|consen 522 LEALSMQ 528 (579)
T ss_pred HHHHHhh
Confidence 6665443
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=8.9e-06 Score=84.90 Aligned_cols=265 Identities=15% Similarity=0.102 Sum_probs=166.4
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
.++-..+.++|+..+-...+.+|.+.+ .-..+|+-+-.+|. .+.|++.=+.-++ .|.-.
T Consensus 44 NfLLs~Q~dKAvdlF~e~l~~d~~t~e-------~~ltLGnLfRsRGE---vDRAIRiHQ~L~~----spdlT------- 102 (389)
T COG2956 44 NFLLSNQPDKAVDLFLEMLQEDPETFE-------AHLTLGNLFRSRGE---VDRAIRIHQTLLE----SPDLT------- 102 (389)
T ss_pred HHHhhcCcchHHHHHHHHHhcCchhhH-------HHHHHHHHHHhcch---HHHHHHHHHHHhc----CCCCc-------
Confidence 344567788899988888887776433 35567777788888 7888764443322 22111
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchH
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPEC 348 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~ 348 (733)
-+-|..++..||.-|+..|-+|+|...+..+..+ +..-+.+.-..+.||....+..+||...++.....+.+-.
T Consensus 103 --~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 103 --FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred --hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 1235558888999999999999999988888764 2333444445555555556666666655544322111111
Q ss_pred HHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004720 349 IWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFV 428 (733)
Q Consensus 349 ~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~ 428 (733)
+ .++-+|
T Consensus 177 ~--eIAqfy----------------------------------------------------------------------- 183 (389)
T COG2956 177 V--EIAQFY----------------------------------------------------------------------- 183 (389)
T ss_pred h--HHHHHH-----------------------------------------------------------------------
Confidence 0 111111
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004720 429 GDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE 508 (733)
Q Consensus 429 g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~ 508 (733)
=..+..+.-..+.+.|.+|+.+|+.-.|... ..-.-++..++..|+|.+|++.++.++
T Consensus 184 ---------------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-------RAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 184 ---------------CELAQQALASSDVDRARELLKKALQADKKCV-------RASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred ---------------HHHHHHHhhhhhHHHHHHHHHHHHhhCccce-------ehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 0133344455677888888888888777542 233557788888889999999888888
Q ss_pred hhCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 509 KLEP-N-IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 509 ~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+.|| . +...-.++..|-+.|+.++.+.-+........ .++...+-++......-...|..-+...+.
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-GADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-CccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 8888 3 34455678888888888888888877776544 344333333444444455666666665555
No 84
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.69 E-value=2.4e-07 Score=101.91 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
++..|..+|..|+|++|++.|+.++...|.+ +.++.++|.||+.+|++++|+.++++|++++| ++..++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 5568999999999999999999999988754 46789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.++...|++++|+.+++....+.+.++++...
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999998877775444
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.69 E-value=4.2e-05 Score=87.58 Aligned_cols=328 Identities=14% Similarity=0.097 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.++++++.+....|++++|+..+.+....-.+... ++-..|..+++.|+ +++|...|..-++. +|.+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~-------~~E~rA~ll~kLg~---~~eA~~~y~~Li~r---NPdn 71 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLA-------VLEKRAELLLKLGR---KEEAEKIYRELIDR---NPDN 71 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHH---CCCc
Confidence 57888999999999999999999887765554332 23345666778888 99999999988887 7655
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHh-----ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH-hcC-ChHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHL-----QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWL-GLG-RYNEAE 333 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl-----~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~-~~g-~~deAi 333 (733)
.. .++.|..+.. .-++.++-..+|+.+.. ..|.+..-+--.+. ..| ++.+..
T Consensus 72 ~~--------------Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~-------~yp~s~~~~rl~L~~~~g~~F~~~~ 130 (517)
T PF12569_consen 72 YD--------------YYRGLEEALGLQLQLSDEDVEKLLELYDELAE-------KYPRSDAPRRLPLDFLEGDEFKERL 130 (517)
T ss_pred HH--------------HHHHHHHHHhhhcccccccHHHHHHHHHHHHH-------hCccccchhHhhcccCCHHHHHHHH
Confidence 43 3344444441 11245666777877765 23443322211122 122 355544
Q ss_pred HHH-HHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 004720 334 LEL-RGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAK 412 (733)
Q Consensus 334 ~~l-~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~ 412 (733)
..+ ...+ ..++|.-| .++-.+|..... ...+..++ ..++. ....
T Consensus 131 ~~yl~~~l-~KgvPslF-~~lk~Ly~d~~K---~~~i~~l~------------------~~~~~-~l~~----------- 175 (517)
T PF12569_consen 131 DEYLRPQL-RKGVPSLF-SNLKPLYKDPEK---AAIIESLV------------------EEYVN-SLES----------- 175 (517)
T ss_pred HHHHHHHH-hcCCchHH-HHHHHHHcChhH---HHHHHHHH------------------HHHHH-hhcc-----------
Confidence 444 3343 23333222 333444431111 11111111 11110 0000
Q ss_pred HHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH---HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 413 AVAELVSDERVLALFVGDAAAKERIAMHAVLWN---CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 413 ~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~---~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
...+.+.. ..+...-.+++|- .+..+-..|+|++|+++++.|+...|.. ..+|...|.
T Consensus 176 -----------~~~~~~~~-~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-------~ely~~Kar 236 (517)
T PF12569_consen 176 -----------NGSFSNGD-DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-------VELYMTKAR 236 (517)
T ss_pred -----------cCCCCCcc-ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHH
Confidence 00000000 0001111223342 4666678999999999999999987744 468999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh--H--------HHHHHHHHH
Q 004720 490 CYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT--D--------FLSLAAHEA 558 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~--~--------lL~la~~~a 558 (733)
+|-..|++.+|.+.+++|..+|+ +=...---.|..++.|+.++|.+.+..+.+-.. +| + ++.-++.-.
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 655566678888899999999999988877653 33 2 334445555
Q ss_pred HHcCCHHHHHHHHHHHHhh---hcCCCCCchhHHHHHHHHHHH
Q 004720 559 VACQALSVAVAALSNLLNF---YTSGKPMPTKEVVVLRTIVTI 598 (733)
Q Consensus 559 ~~~~~~~~a~~aL~~Ll~~---~~~~~~~~~~~~~~lR~li~l 598 (733)
.+.|+...|.+-+..+... +..| +..=|.-++=|.++|-
T Consensus 316 ~r~~~~~~ALk~~~~v~k~f~~~~~D-QfDFH~Yc~RK~t~r~ 357 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKHFDDFEED-QFDFHSYCLRKMTLRA 357 (517)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHhhccHHH
Confidence 5678888887666555543 3333 2222444443444444
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=9.4e-06 Score=84.73 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=91.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.-++|-+.++|+.||+.-+.-..+.+.... ...|..|.-++.-+....++++|.+.+.+|++-|| ++.....+.+|+
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~--~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYR--VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccch--hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 457788999999999999987777776553 68999999999999999999999999999999999 999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
+.+|+++.|++.++.+... +|+++..
T Consensus 225 ~~~g~y~~AV~~~e~v~eQ---n~~yl~e 250 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQ---NPEYLSE 250 (389)
T ss_pred HhccchHHHHHHHHHHHHh---ChHHHHH
Confidence 9999999999999999988 5554444
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00028 Score=79.02 Aligned_cols=341 Identities=13% Similarity=0.062 Sum_probs=184.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
....-+...|+|++|..-..|.+...|+.+.. .+..-+++...++ |++|. .++++........
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a-------~~cKvValIq~~k---y~~AL-------k~ikk~~~~~~~~ 79 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDA-------IRCKVVALIQLDK---YEDAL-------KLIKKNGALLVIN 79 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhh-------HhhhHhhhhhhhH---HHHHH-------HHHHhcchhhhcc
Confidence 33445568899999999999999998876543 4545556666777 77776 3333332211100
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc-
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK- 343 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~- 343 (733)
. -...-|-|.++.+..|+|+++++-+ +..++....+++.+++++|+|++|...++.++.+.
T Consensus 80 ~-----------~~fEKAYc~Yrlnk~Dealk~~~~~-------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 80 S-----------FFFEKAYCEYRLNKLDEALKTLKGL-------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred h-----------hhHHHHHHHHHcccHHHHHHHHhcc-------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 0 1123366778899999999999944 34567788999999999999999999999988544
Q ss_pred CCc-hHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 344 GIP-ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 344 ~~~-~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
+.. +..-.++...- .... .+..+. .-.....+.+...+..-..+. .+.-+.-..+..++..+
T Consensus 142 dd~d~~~r~nl~a~~---a~l~-~~~~q~----v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~-------- 204 (652)
T KOG2376|consen 142 DDQDEERRANLLAVA---AALQ-VQLLQS----VPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRI-------- 204 (652)
T ss_pred chHHHHHHHHHHHHH---Hhhh-HHHHHh----ccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH--------
Confidence 222 22221111100 0000 001110 001112223333333333321 11110100011121111
Q ss_pred HHHHhh-cchhHH-HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh------------------------
Q 004720 423 VLALFV-GDAAAK-ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN------------------------ 476 (733)
Q Consensus 423 v~~~~~-g~~~~~-~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~------------------------ 476 (733)
-.+.+. +..... -..-+..+--..+.++..+|+-.+|...|...+...|.|+..
T Consensus 205 ~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 205 CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 011111 111101 122333444457888889999999999999887665544311
Q ss_pred ------------------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 477 ------------------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 477 ------------------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
+.-...+++|.++--+-.+.-+.+.+.+..-=..-| ..+...+..-...+...+-+|++.+
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L 364 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELL 364 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 111233455555555555555555555532211123 2333333333333334466666666
Q ss_pred HHHHhccCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 538 LAMTICLDFT-TDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 538 ~~~~~~~~~~-~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.......+.+ -.++.+-+|..+..|+.++|+..|..+++.
T Consensus 365 ~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 365 LQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 5554443332 346666789999999999999999865543
No 88
>PLN02789 farnesyltranstransferase
Probab=98.64 E-value=6.9e-06 Score=88.78 Aligned_cols=216 Identities=9% Similarity=-0.020 Sum_probs=149.7
Q ss_pred HHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh
Q 004720 188 RTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET 267 (733)
Q Consensus 188 ~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~ 267 (733)
++....++++.|+..+++++.+.|.... +++..|..+...+.. +++++.++.+++.. ++.+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~yt-------aW~~R~~iL~~L~~~--l~eeL~~~~~~i~~---npkn------- 105 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYT-------VWHFRRLCLEALDAD--LEEELDFAEDVAED---NPKN------- 105 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHH-------HHHHHHHHHHHcchh--HHHHHHHHHHHHHH---CCcc-------
Confidence 3455778999999999999999998654 466777777777731 89999999999988 5422
Q ss_pred hhhhhcHHHHHHHHHHHHhccCc--HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 268 TELKGLKFKTLRFISAIHLQKGE--YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 268 ~~~~el~~~~l~~La~~yl~~~~--~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
..+|...+.++...+. +++++.+++.+... ++.+..++.-++-++...|++++|+..+.++|...+
T Consensus 106 -------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~- 173 (320)
T PLN02789 106 -------YQIWHHRRWLAEKLGPDAANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV- 173 (320)
T ss_pred -------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-
Confidence 1267777777766664 47788999888775 355666778899999999999999888877764222
Q ss_pred chHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHH
Q 004720 346 PECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLA 425 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~ 425 (733)
.+.++|..|..++..+
T Consensus 174 --------------------------------------------------------~N~sAW~~R~~vl~~~-------- 189 (320)
T PLN02789 174 --------------------------------------------------------RNNSAWNQRYFVITRS-------- 189 (320)
T ss_pred --------------------------------------------------------CchhHHHHHHHHHHhc--------
Confidence 1222222221111110
Q ss_pred HhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHHHH
Q 004720 426 LFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDRAQ 501 (733)
Q Consensus 426 ~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~A~ 501 (733)
+..-......+++++++..++.+.|.|.. ..+.++.++.. ++...+|.
T Consensus 190 ---------------------~~l~~~~~~~e~el~y~~~aI~~~P~N~S-------aW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 190 ---------------------PLLGGLEAMRDSELKYTIDAILANPRNES-------PWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred ---------------------cccccccccHHHHHHHHHHHHHhCCCCcC-------HHHHHHHHHhcCCcccccchhHH
Confidence 00000001235678888899999887753 46667777766 56778899
Q ss_pred HHHHHHHhhCC-ChHHHHHHHHHHHh
Q 004720 502 EYITEAEKLEP-NIASAFLKFKIYLQ 526 (733)
Q Consensus 502 e~~~~A~~ldp-~~~t~~~~~ki~l~ 526 (733)
+.|.++.+.+| +++..-.++.++..
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 99999999888 88888888888874
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.64 E-value=0.00018 Score=82.64 Aligned_cols=368 Identities=11% Similarity=0.031 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhh--hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLL--FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~--~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
..+..-+-+++..|..-.|+..++++.... |..+......+.+|+ -.-+. +++++.+-+++++.+....
T Consensus 358 e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~------e~l~~---~eegldYA~kai~~~~~~~ 428 (799)
T KOG4162|consen 358 ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI------ERLKL---VEEGLDYAQKAISLLGGQR 428 (799)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH------hchhh---hhhHHHHHHHHHHHhhhhh
Confidence 344455778889999999999999999887 544544444444444 23344 8999999999999753321
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKG-----------EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG 327 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~-----------~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g 327 (733)
..+..+++..+|-+|-..- ...+++..++.+.+. .+.+|.+.|-..--+.-.+
T Consensus 429 ------------~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~----d~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 429 ------------SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF----DPTDPLVIFYLALQYAEQR 492 (799)
T ss_pred ------------hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHHH
Confidence 3355668889999985431 356788889999886 5678888777776777778
Q ss_pred ChHHHHHHHHHhhhc-cCCchHHHHhHHHHHHHhch-hhhHHHHHHHHH-------hhhccCCch-----HHHHHHHHHH
Q 004720 328 RYNEAELELRGMVEI-KGIPECIWVSAVEAYFQAAG-TAGAETAKGVFL-------GLLGRCHVS-----AKAAVRMAHR 393 (733)
Q Consensus 328 ~~deAi~~l~~~l~~-~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~-------~ll~~~~~~-----~~~a~~~l~~ 393 (733)
+.++|..+++..+.- .......|--.+-++-..++ ..|...++.++. ...++-+-+ ..+++.++.+
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 999999999888843 43333333323322222222 333333332222 111221111 2233333322
Q ss_pred hhc-CCCCCcchHHH-HHHHHHH------------HHhhhHHHHHHHhh------cch--hHH-------H-hhHHHHHH
Q 004720 394 VAG-DEGDGVSEAAV-KLRAKAV------------AELVSDERVLALFV------GDA--AAK-------E-RIAMHAVL 443 (733)
Q Consensus 394 ~l~-~~~sp~~~~~l-~~ka~~l------------~~l~~~e~v~~~~~------g~~--~~~-------~-~~~~~~ll 443 (733)
.+. -+.-+.....+ .++...+ ........+..... |.+ +++ . ..-..-.+
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 220 00000000000 0000000 00000000100000 100 010 0 11122456
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 444 WNCASIL-FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 444 W~~g~~~-~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
|-.+... .+.++-++|.-....+-.++| .-+..++.+|.++...|++.+|++.|..|+.+|| ++...-.++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~-------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDP-------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcch-------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 7755555 455556666667777776665 4467899999999999999999999999999999 898888999
Q ss_pred HHHHhcCCHHHHHH--HHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 522 KIYLQKNDQEGAIN--QILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 522 ki~l~~gd~e~Al~--~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
+++++.|+.-.|.. .+..+.+..+.+|+.-.--.....+.|+...|..-+..-++.-.+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 99999999888887 888888888888885555568889999999999888888884333
No 90
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.62 E-value=4.8e-07 Score=86.44 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
++..|..+++.|+|++|...|+....++|.+ +.-+.+||.|+..+|+|.+|++.|.+|..++| +|.+.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 3458999999999999999999999887754 46789999999999999999999999999999 999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
.+++..|+.+.|.++++......+..|.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 9999999999999999988766655555
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=0.0003 Score=86.92 Aligned_cols=380 Identities=15% Similarity=0.065 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh-hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCL-LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l-~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
+++...+...+..|++..+..++..+-.- ....|. +....+..++..++ +++|..++.++.+.......
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~-------l~~~~a~~~~~~g~---~~~a~~~l~~a~~~~~~~~~ 444 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR-------LVLLQAWLAQSQHR---YSEVNTLLARAEQELKDRNI 444 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc-------hHHHHHHHHHHCCC---HHHHHHHHHHHHHhccccCc
Confidence 45555566777889888877776554111 111222 23344556677888 99999999999887443210
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC----cHHHHHHHHHHhcCChHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA----SLPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p----~~~~lk~~il~~~g~~deAi~~ 335 (733)
.. + ...+..+...++.++...|++++|..+++.+.... ....+ ......+.++...|++++|...
T Consensus 445 ~~---~-----~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 445 EL---D-----GTLQAEFNALRAQVAINDGDPEEAERLAELALAEL---PLTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred cc---c-----hhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00 0 12244455567888999999999999998877632 11122 1225556677888999999999
Q ss_pred HHHhhhccC---CchHH---HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHH
Q 004720 336 LRGMVEIKG---IPECI---WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKL 409 (733)
Q Consensus 336 l~~~l~~~~---~~~~~---~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ 409 (733)
+...+.... .+... ....+..+...++ . ..+...+.+.+
T Consensus 514 ~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~-----------------~----~~A~~~~~~al-------------- 558 (903)
T PRK04841 514 MQQTEQMARQHDVYHYALWSLLQQSEILFAQGF-----------------L----QAAYETQEKAF-------------- 558 (903)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC-----------------H----HHHHHHHHHHH--------------
Confidence 876653111 11000 0011111111111 0 11111111110
Q ss_pred HHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 410 RAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 410 ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
. ....... ........+.+..|..++..|++++|.+.+..++........ ......+..++.
T Consensus 559 ---~------------~~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~ 620 (903)
T PRK04841 559 ---Q------------LIEEQHL-EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP--QQQLQCLAMLAK 620 (903)
T ss_pred ---H------------HHHHhcc-ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc--hHHHHHHHHHHH
Confidence 0 0000000 000011123445799999999999999999999876542211 234567788999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCC--ChHH------HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH----HHHHHHH
Q 004720 490 CYLGLSLIDRAQEYITEAEKLEP--NIAS------AFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF----LSLAAHE 557 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A~~ldp--~~~t------~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l----L~la~~~ 557 (733)
++...|+++.|.+.+.++..+.+ .... .......+...|+.+.|.+.+..........+.+ +...+..
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 99999999999999999977633 1111 1123355566899999998876655422222211 2333455
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH--HHhhcCChhHHHHHHHHHHHHhhhcccCccCCCcccc
Q 004720 558 AVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTI--LTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAG 635 (733)
Q Consensus 558 a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l--~~~~~~~~~~~l~~~~~A~~~l~~~~~~~~~~~~~~~ 635 (733)
....|+.+.|+..|+..+...... ..+. ...|.++.+ .....|+.++...++.+|.+.....|... .-
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~-g~~~---~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~r------~f 770 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSL-RLMS---DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFIS------HF 770 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHh-CchH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchhh------hH
Confidence 566888999988888888743222 1111 222222222 24456888899999999998776554321 23
Q ss_pred chhhHHHHh
Q 004720 636 RREQNWLAV 644 (733)
Q Consensus 636 ~~E~~Wf~~ 644 (733)
.++.+|+..
T Consensus 771 ~~~g~~l~~ 779 (903)
T PRK04841 771 VIEGEAMAQ 779 (903)
T ss_pred HhccHHHHH
Confidence 456666633
No 92
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=5.7e-07 Score=84.07 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.++..|..+++.|+|++|+++|+.++...|.+ ...+.+++.||...|++++|.++++++++.+| ++...+.+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 35568999999999999999999999887644 46789999999999999999999999999999 89999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
..++...|++++|++.++......+.++.+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 999999999999999999999887655553
No 93
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2e-06 Score=89.52 Aligned_cols=274 Identities=14% Similarity=0.030 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
+.+...++++ .++...| ...|-...+..+++--..+..... .+ ..--|+ ..++.||+..|.+.+|.+.
T Consensus 178 p~l~kaLFey--~fyhenD---v~~aH~~~~~~~~~~~a~~s~~~~--~~---~dwwWk--~Q~gkCylrLgm~r~Aekq 245 (478)
T KOG1129|consen 178 PTLVKALFEY--LFYHEND---VQKAHSLCQAVLEVERAKPSGSTG--CT---LDWWWK--QQMGKCYLRLGMPRRAEKQ 245 (478)
T ss_pred hHHHHHHHHH--HHHhhhh---HHHHHHHHHHHHHHHhcccccccc--ch---HhHHHH--HHHHHHHHHhcChhhhHHH
Confidence 3455555543 2344455 556655555555552222211111 10 111222 3579999999999999999
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGL 376 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~l 376 (733)
++-.++. ..+|....+..++|.+...+..|+..+...+...|-...+.+..+..+...+. +.+.+.++.+
T Consensus 246 lqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v---- 316 (478)
T KOG1129|consen 246 LQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV---- 316 (478)
T ss_pred HHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH----
Confidence 9888884 46899999999999999999999999988776555444444455565555444 5556666533
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCH
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDY 456 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y 456 (733)
+ +..|.+-+++ . --|..||=.++-
T Consensus 317 ------------------l--k~~~~nvEai-----------------------------A-------cia~~yfY~~~P 340 (478)
T KOG1129|consen 317 ------------------L--KLHPINVEAI-----------------------------A-------CIAVGYFYDNNP 340 (478)
T ss_pred ------------------H--hcCCccceee-----------------------------e-------eeeeccccCCCh
Confidence 2 2333221000 0 036668889999
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--C--ChHHHHHHHHHHHhcCCHHH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE--P--NIASAFLKFKIYLQKNDQEG 532 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld--p--~~~t~~~~~ki~l~~gd~e~ 532 (733)
+-|+.+|+..|..-..+ ..+|.|+++|.+--+++|-+...+.+|+... | -....|++..|++--||+..
T Consensus 341 E~AlryYRRiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl 413 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL 413 (478)
T ss_pred HHHHHHHHHHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH
Confidence 99999999988764333 3689999999999999999999999998763 4 34667889999999999999
Q ss_pred HHHHHHHHHhccCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 533 AINQILAMTICLDFTTD-FLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 533 Al~~l~~~~~~~~~~~~-lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
|-+|+.-.....+.+.+ +-.++ ..+.+.|+.+.|...|+.--+
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLa-vL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLA-VLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHH-HHHhhcCchHHHHHHHHHhhh
Confidence 99999888777655554 44554 566678999888766654443
No 94
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.59 E-value=6.6e-06 Score=87.60 Aligned_cols=192 Identities=18% Similarity=0.183 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
.+.-..+..+.++|+.|-..|+++.|..+|.+|.+...... ...+ .-..+ ..|+.....++++.|+.++++
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~-----~~~~---Aa~~~-~~Aa~~~k~~~~~~Ai~~~~~ 99 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG-----DKFE---AAKAY-EEAANCYKKGDPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------HHH---HHHHH-HHHHHHHHHTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC-----CHHH---HHHHH-HHHHHHHHhhCHHHHHHHHHH
Confidence 36666789999999999999999999999999998765411 0100 11222 235555566799999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHhc-CCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHH
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALSK-NETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAI 284 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~~-~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~ 284 (733)
|.++...... ....+..+.++|..+-.. ++ +++|+.+|++|.++.+... . ......++..+|.+
T Consensus 100 A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d---~e~Ai~~Y~~A~~~y~~e~-~----------~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGR-FSQAAKCLKELAEIYEEQLGD---YEKAIEYYQKAAELYEQEG-S----------PHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT--HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCC-C----------hhhHHHHHHHHHHH
Confidence 9998765332 245788899999999998 89 9999999999999987643 1 11234588899999
Q ss_pred HhccCcHHHHHHHHHHHHccCCCCCCCCCc--HHHH-HHHHHHhcCChHHHHHHHHHhhh
Q 004720 285 HLQKGEYESVIKCVRVLREGSFDGGDHHAS--LPVL-AMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 285 yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~--~~~l-k~~il~~~g~~deAi~~l~~~l~ 341 (733)
+...++|++|+..++.+.....+.+-..++ .+++ .+-|++..|++..|...+.....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998776532100001111 2244 44577788999988888877653
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.57 E-value=0.00014 Score=78.11 Aligned_cols=138 Identities=15% Similarity=0.114 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
.-++.+.++...|-.=+..|+|..|.+...++.+--+. + .--+..-|+++-..||++.|=.++.++
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~----p----------~l~~l~aA~AA~qrgd~~~an~yL~ea 144 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ----P----------VLAYLLAAEAAQQRGDEDRANRYLAEA 144 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc----h----------HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44677888999999999999999999999987764321 1 112233477888999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
.++.++..- .++.......+.++| ++.|..-+.+..+. .|.+. .+++....+|+
T Consensus 145 ae~~~~~~l------~v~ltrarlll~~~d---~~aA~~~v~~ll~~---~pr~~--------------~vlrLa~r~y~ 198 (400)
T COG3071 145 AELAGDDTL------AVELTRARLLLNRRD---YPAARENVDQLLEM---TPRHP--------------EVLRLALRAYI 198 (400)
T ss_pred hccCCCchH------HHHHHHHHHHHhCCC---chhHHHHHHHHHHh---CcCCh--------------HHHHHHHHHHH
Confidence 988443211 145667777889999 99999888888777 54332 28888899999
Q ss_pred ccCcHHHHHHHHHHHHcc
Q 004720 287 QKGEYESVIKCVRVLREG 304 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~ 304 (733)
..|+|......+..+.+.
T Consensus 199 ~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 199 RLGAWQALLAILPKLRKA 216 (400)
T ss_pred HhccHHHHHHHHHHHHHc
Confidence 999999999999888873
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=7.1e-07 Score=85.26 Aligned_cols=106 Identities=12% Similarity=0.055 Sum_probs=70.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
++.++...|+++.|+.++.++..+.|..+. .++++|..+...|+ +++|+.+|++++.+ +|.+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-------a~~~lg~~~~~~g~---~~~A~~~y~~Al~l---~p~~~---- 92 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWR-------AHIALAGTWMMLKE---YTTAINFYGHALML---DASHP---- 92 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-------HHHHHHHHHHHHhh---HHHHHHHHHHHHhc---CCCCc----
Confidence 456666777777777777777777776543 36666777777777 77777777777776 44332
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHH
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKA 322 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~i 322 (733)
..+..+|.++...|++++|+.+++.+... .+.+|..+.++..+
T Consensus 93 ----------~a~~~lg~~l~~~g~~~eAi~~~~~Al~~----~p~~~~~~~~~~~~ 135 (144)
T PRK15359 93 ----------EPVYQTGVCLKMMGEPGLAREAFQTAIKM----SYADASWSEIRQNA 135 (144)
T ss_pred ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHH
Confidence 15667777777777777777777777664 34555555555443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=0.00017 Score=89.05 Aligned_cols=178 Identities=15% Similarity=0.050 Sum_probs=115.0
Q ss_pred HhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHH
Q 004720 142 WHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLA 221 (733)
Q Consensus 142 ~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La 221 (733)
.+..|+++.|...++.|.+..+.. +...+..........++.+++..|+++.|...++++....+.... ....
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~ 491 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDR-----NIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRI 491 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhcccc-----CcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHH
Confidence 345556666666665554443210 000011111233445677888999999999999999986443221 1233
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..+..+|..+...|+ +++|..+++++++..... ++ ......++..++.++...|+++.|..+++.+
T Consensus 492 ~a~~~lg~~~~~~G~---~~~A~~~~~~al~~~~~~-g~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 492 VATSVLGEVHHCKGE---LARALAMMQQTEQMARQH-DV----------YHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhh-cc----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 446678999999999 999999999999985532 11 1122346788899999999999999888776
Q ss_pred HccCC-CCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 302 REGSF-DGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 302 ~~~~~-~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
..... .+....|. .....+.++...|++++|...+...+
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 66321 00111222 22456778888899999999887655
No 98
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.53 E-value=3e-07 Score=75.75 Aligned_cols=61 Identities=36% Similarity=0.519 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQEYITEAEKLEP 512 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~e~~~~A~~ldp 512 (733)
+.|..++..|+|++|+..|+.++.+.|. .+.++.++|.||.++| ++++|+++++++++++|
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~-------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELDPN-------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4899999999999999999999999764 4568999999999999 79999999999999998
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.51 E-value=0.00031 Score=79.40 Aligned_cols=349 Identities=17% Similarity=0.139 Sum_probs=203.5
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
..++|+.|++||..|....+. ....+-|+ |-.-...|+++....-=.+-.++.|+.- .-
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d----------N~qilrDl----slLQ~QmRd~~~~~~tr~~LLql~~~~r-------a~ 145 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD----------NLQILRDL----SLLQIQMRDYEGYLETRNQLLQLRPSQR-------AS 145 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC----------cHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHhhhhhH-------HH
Confidence 456888999999998875331 00010111 2222346777776666666666666422 12
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+.-+++++.-.|+ |..|...++.....+...+.... . +.+. .+..-.....+.|.+++|++-+..-+.
T Consensus 146 w~~~Avs~~L~g~---y~~A~~il~ef~~t~~~~~s~~~----~---e~se--~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 146 WIGFAVAQHLLGE---YKMALEILEEFEKTQNTSPSKED----Y---EHSE--LLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhhccCCCHHH----H---HHHH--HHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 4466778888888 99999888877776543221111 0 1112 333347778888889999877655544
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccC---
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRC--- 380 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~--- 380 (733)
.. -..-.....++.++.+.+++++|...++.++...|+....|......+.. .....+.++.++..+-...
T Consensus 214 ~i----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk--~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 214 QI----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK--IKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HH----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhcCccc
Confidence 11 11122336788899999999999999999985555555556666665530 1112333333322211110
Q ss_pred ------------Cch-HHHHHHHHHHhhcCCCCCcchH---HH---HHHHHHHHHhhhHHHHHHHhh---cc--hh--HH
Q 004720 381 ------------HVS-AKAAVRMAHRVAGDEGDGVSEA---AV---KLRAKAVAELVSDERVLALFV---GD--AA--AK 434 (733)
Q Consensus 381 ------------~~~-~~~a~~~l~~~l~~~~sp~~~~---~l---~~ka~~l~~l~~~e~v~~~~~---g~--~~--~~ 434 (733)
+.. ...--.++...+. +|-|---. .+ -+|..+++++. ..... |. -. .+
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~-Kg~p~vf~dl~SLyk~p~k~~~le~Lv-----t~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLS-KGVPSVFKDLRSLYKDPEKVAFLEKLV-----TSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhh-cCCCchhhhhHHHHhchhHhHHHHHHH-----HHHHhhcccccCCCcccc
Confidence 000 1111223333332 33331111 01 11222222222 11111 11 00 00
Q ss_pred -HhhHHHHHHHH---HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 435 -ERIAMHAVLWN---CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 435 -~~~~~~~llW~---~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
....-.+++|- .+..+...|+|+.|.+|...|+...|. .-.+|..-|..+...|+++.|...+.+|-++
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-------liEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-------LIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 11233456666 566778999999999999999987664 3456778888899999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
|- +....---++-.++.++.++|.+....+.+-.
T Consensus 435 D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 435 DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 86 55444344566668889999998888877654
No 100
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.50 E-value=4.6e-05 Score=81.01 Aligned_cols=223 Identities=19% Similarity=0.224 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCC-------CchhhhhhHHHHHHHHHHHHhCCCHHH---HHHHHH
Q 004720 437 IAMHAVLWNCASILFRSK-DYEASAEMFEKSMLYLPF-------DVENRILRAKSFRVLCLCYLGLSLIDR---AQEYIT 505 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~-~y~~A~~~y~~aL~~~~~-------~~~~~~~~akl~r~la~cyl~l~~~~~---A~e~~~ 505 (733)
..+..+++|.|...++.+ +|++|+.|.+.|.++.+. ..+....+.+++|.++.+|+..+.++. |.++++
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 345568889999999999 999999999999987421 111124788999999999999988664 444444
Q ss_pred HHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---ChHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhhcC
Q 004720 506 EAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF---TTDFLSLAAHEAVACQALSVAVAAL-SNLLNFYTS 580 (733)
Q Consensus 506 ~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~---~~~lL~la~~~a~~~~~~~~a~~aL-~~Ll~~~~~ 580 (733)
.+..--| .+...++.+++..+.++.+.+-+.+..|....+. +-++..-++....+.. .+.+.+.| +.|++....
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCC
Confidence 4544456 4666778899999999999999999999988763 2233333344444433 34444555 555554433
Q ss_pred CCCCchhHHHHHHHHHHHH-HhhcCCh--hHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHHhhhhhhhhhccccc
Q 004720 581 GKPMPTKEVVVLRTIVTIL-TQETGNE--SEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEK 657 (733)
Q Consensus 581 ~~~~~~~~~~~lR~li~l~-~~~~~~~--~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~ 657 (733)
. +.+.+.. +-+.|++ .+..++. .+.++-+...+..+.+. ..++.+.+...|+.-.=||.|-++.+.+
T Consensus 191 ~---~~~~~e~-~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~------~~~~ls~~~~~a~~~LLW~~~~~~~~~k 260 (278)
T PF08631_consen 191 S---EDQWLEK-LVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS------LGKQLSAEAASAIHTLLWNKGKKHYKAK 260 (278)
T ss_pred C---hhHHHHH-HHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 2211111 1111222 2332221 22244333333333332 1235677899999999999999999999
Q ss_pred chhhHHHHHHHHH
Q 004720 658 KYELCMEFLRLAS 670 (733)
Q Consensus 658 ~~~~~~~f~~la~ 670 (733)
+|+.+.+|+.+|.
T Consensus 261 ~y~~A~~w~~~al 273 (278)
T PF08631_consen 261 NYDEAIEWYELAL 273 (278)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999987
No 101
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.6e-06 Score=88.77 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
.++.-...|.+...+|+++.|.....+.+.+++.+. ..+|--|.+++..++ .+.++..|++++.+ +|
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-------~al~vrg~~~yy~~~---~~ka~~hf~qal~l---dp 234 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-------EALYVRGLCLYYNDN---ADKAINHFQQALRL---DP 234 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-------HHHHhcccccccccc---hHHHHHHHhhhhcc---Ch
Confidence 356666778899999999999999999999988654 358888999999999 99999999999999 66
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+.++..-.. ..-+..+++.-|+-.++.|+|.+|-++|..++++ +|+
T Consensus 235 dh~~sk~~~~--~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-------dP~------------------------ 281 (486)
T KOG0550|consen 235 DHQKSKSASM--MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-------DPS------------------------ 281 (486)
T ss_pred hhhhHHhHhh--hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-------Ccc------------------------
Confidence 4443211111 1123346666677777777777777777777663 333
Q ss_pred hhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 339 MVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 339 ~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
+.
T Consensus 282 ----------------------------------------------------------------n~-------------- 283 (486)
T KOG0550|consen 282 ----------------------------------------------------------------NK-------------- 283 (486)
T ss_pred ----------------------------------------------------------------cc--------------
Confidence 00
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
....-++||.+.+....|+-.+|+.-++.++.+++ ..-|.+..+|.||+-+++|+
T Consensus 284 ------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-------syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 284 ------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-------SYIKALLRRANCHLALEKWE 338 (486)
T ss_pred ------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 00112677888888899999999999999999865 55688999999999999999
Q ss_pred HHHHHHHHHHhhCC--ChHHHHHHHHHHHh
Q 004720 499 RAQEYITEAEKLEP--NIASAFLKFKIYLQ 526 (733)
Q Consensus 499 ~A~e~~~~A~~ldp--~~~t~~~~~ki~l~ 526 (733)
.|.+++++|.+.+. ++.-.+..+...++
T Consensus 339 ~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 99999999988866 56655555655554
No 102
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.50 E-value=3.1e-07 Score=79.09 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=70.9
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~ 530 (733)
.+|+|+.|+.+|++.+...|.++ ....+.++|.||.+.|+|++|.+++++ .+.+| ++..+++.++++...|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~-----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP-----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH-----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H
T ss_pred CCccHHHHHHHHHHHHHHCCCCh-----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH
Confidence 36899999999999999888541 345778899999999999999999999 77888 788999999999999999
Q ss_pred HHHHHHHHH
Q 004720 531 EGAINQILA 539 (733)
Q Consensus 531 e~Al~~l~~ 539 (733)
++|++.+++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999876
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00012 Score=74.53 Aligned_cols=205 Identities=19% Similarity=0.211 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA 319 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk 319 (733)
.++-++...+.+.....+ .+ .+-.+.++....-+.+..+..+-|..|++.++..+ +..+.+.-++
T Consensus 28 seevv~l~~~~~~~~k~~----~~-------g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lk 92 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSG----AL-------GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLK 92 (289)
T ss_pred HHHHHHHHHHHHHHhhhc----cc-------CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHH
Confidence 466666666555543322 11 11256677777888888999999999999998753 3445555777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCC
Q 004720 320 MKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEG 399 (733)
Q Consensus 320 ~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~ 399 (733)
+-.+...|.+++|++++..++...|+...++.+=+-+....+. ..++++. -...++.|+
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK--~l~aIk~---------------ln~YL~~F~---- 151 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK--NLEAIKE---------------LNEYLDKFM---- 151 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC--cHHHHHH---------------HHHHHHHhc----
Confidence 7777788999999999999986554333333211111110100 0111110 011222332
Q ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhh
Q 004720 400 DGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRIL 479 (733)
Q Consensus 400 sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~ 479 (733)
.|.++ -|..+.+|+..|+|..|+-.|+..+-+.|-++
T Consensus 152 --~D~EA------------------------------------W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~----- 188 (289)
T KOG3060|consen 152 --NDQEA------------------------------------WHELAEIYLSEGDFEKAAFCLEELLLIQPFNP----- 188 (289)
T ss_pred --CcHHH------------------------------------HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH-----
Confidence 12222 24478999999999999999999999888664
Q ss_pred hHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 480 RAKSFRVLCLCYLGL---SLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 480 ~akl~r~la~cyl~l---~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
-++.+++-.+.-. .++.-|.++|.+|++++| +....|-.+...-
T Consensus 189 --l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 189 --LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 3555666544444 467889999999999999 7777776665543
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.48 E-value=7.3e-05 Score=87.62 Aligned_cols=346 Identities=13% Similarity=0.034 Sum_probs=206.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
+..+...|.+||.||-++.+..+... + .-|..+.+..+.+.|...+-++-+.+|... ....
T Consensus 504 d~~Dm~RA~kCf~KAFeLDatdaeaa-----------a---a~adtyae~~~we~a~~I~l~~~qka~a~~-----~k~n 564 (1238)
T KOG1127|consen 504 DSDDMKRAKKCFDKAFELDATDAEAA-----------A---ASADTYAEESTWEEAFEICLRAAQKAPAFA-----CKEN 564 (1238)
T ss_pred HHHHHHHHHHHHHHHhcCCchhhhhH-----------H---HHHHHhhccccHHHHHHHHHHHhhhchHHH-----HHhh
Confidence 33334467777777777654311100 0 115567778888888887666666555422 1122
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
....|.-+++.++ +..|+.||+.|+.+ +|.+ ...|..|+.+|...|.|.-|++.++++..
T Consensus 565 W~~rG~yyLea~n---~h~aV~~fQsALR~---dPkD--------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHN---LHGAVCEFQSALRT---DPKD--------------YNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhccccccCccc---hhhHHHHHHHHhcC---Cchh--------------HHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 3347888999999 99999999999998 5522 23899999999999999999999999876
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH-------HHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 304 GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI-------WVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 304 ~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~-------~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
. .+.+-.+.|...-+..-.|+|.+|...+.+++........+ +++....+.-.+- ..+.+++++.+..
T Consensus 625 L----rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 625 L----RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred c----CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4 23444444666667777799999999988776322222222 2232322222211 2344444433221
Q ss_pred -----hhccCCch-HH--------------------HHHHHHHH-hhcCCCCCcchH-HH----HHHHHH-HHHhhh-HH
Q 004720 376 -----LLGRCHVS-AK--------------------AAVRMAHR-VAGDEGDGVSEA-AV----KLRAKA-VAELVS-DE 421 (733)
Q Consensus 376 -----ll~~~~~~-~~--------------------~a~~~l~~-~l~~~~sp~~~~-~l----~~ka~~-l~~l~~-~e 421 (733)
.+..+.+. .+ -.+.++.. +......+++.- .+ ...... ...+.. +.
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 11112221 00 01111111 211011121110 00 000000 000000 00
Q ss_pred HH---HH-Hhh----cchh---------HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHH
Q 004720 422 RV---LA-LFV----GDAA---------AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSF 484 (733)
Q Consensus 422 ~v---~~-~~~----g~~~---------~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~ 484 (733)
.+ .+ .+. ++.. .-...+-.-.+||.--+.-..|+|.-|-..|-++....|... -.+
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~-------~~W 853 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCH-------CQW 853 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccch-------hhe
Confidence 00 01 000 1111 001233345789966666666999999999999988777543 347
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~ 539 (733)
.|++..+++..+++.|.+.+.++..+|| +...-.-++.|....|+.-+++..+..
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999 888888899999999998888887766
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=8.5e-06 Score=82.14 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=107.1
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH-HHhcCC-
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI-YLQKND- 529 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki-~l~~gd- 529 (733)
.++.++++..++.++...|.+ +..+..+|.+|...|++++|.+.|++|++++| ++...+..+.+ +...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence 678899999999999988755 35789999999999999999999999999999 88888888886 467777
Q ss_pred -HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 530 -QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 530 -~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+++|.+.+....+..+.+++.+.+.+..+.+.|+.+.|+..++.+++....+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5999999999999998899988888899999999999999999999966555
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=3.2e-06 Score=85.25 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHH-HHhCCC--HHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLC-YLGLSL--IDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~c-yl~l~~--~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.|..+...|+|++|++.|+.++.+.|.+ ..++.++|.+ |...|+ +++|.+.++++++++| ++...++++
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGEN-------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 7889999999999999999999998755 4578999998 477787 5999999999999999 999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
.++.+.|++++|+.+++++....+.+.
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999998875433
No 107
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.45 E-value=3.9e-06 Score=75.96 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASA 517 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~ 517 (733)
.+++.|..+++.|+|++|++.|..++...|.+ +.....+..++.+|.+.|++++|.++++++...+| + +...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 35678999999999999999999999887754 24467889999999999999999999999999988 4 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
+.+..++...|+.++|++.+..+....+.++
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 7889999999999999999999988866544
No 108
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.43 E-value=8e-07 Score=92.79 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
.+|+.||++|+|++||++|..++..+|.|. -++.|+|.+|++++.|..|.++|+.|+.+|. ++..+-.+...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np-------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP-------VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc-------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 489999999999999999999999998664 3678999999999999999999999999999 77777777888
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
-...|+.++|-+.++.+..+.+.+.+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 88899999999999999999776544
No 109
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=8.2e-05 Score=80.50 Aligned_cols=208 Identities=11% Similarity=-0.023 Sum_probs=133.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC-ChHHHHHHHHHhhhccCCchHHHHhHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG-RYNEAELELRGMVEIKGIPECIWVSAVE 355 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g-~~deAi~~l~~~l~~~~~~~~~~ls~~~ 355 (733)
++-.+-.++...+.+++|+..++.+.++ ++.+..++..+..++..+| ++++++..+..++...+..-.+|-.-..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 4444455566677899999999999987 4677788899999999998 5799999998888544444334321111
Q ss_pred HHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 356 AYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 356 ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
++ ..+++. ....++..+++++ +.+|.+-.+|.
T Consensus 115 ~l-----------------~~l~~~--~~~~el~~~~kal--~~dpkNy~AW~--------------------------- 146 (320)
T PLN02789 115 LA-----------------EKLGPD--AANKELEFTRKIL--SLDAKNYHAWS--------------------------- 146 (320)
T ss_pred HH-----------------HHcCch--hhHHHHHHHHHHH--HhCcccHHHHH---------------------------
Confidence 11 111110 0122333444444 34443322221
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC---CC----HHHHHHHHHHHH
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL---SL----IDRAQEYITEAE 508 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l---~~----~~~A~e~~~~A~ 508 (733)
+.|......|+|++|+++|..+++..|.|. .++..++.+..++ |. .+++++++.+++
T Consensus 147 ---------~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-------sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 147 ---------HRQWVLRTLGGWEDELEYCHQLLEEDVRNN-------SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred ---------HHHHHHHHhhhHHHHHHHHHHHHHHCCCch-------hHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 267777778899999999999999988664 3455566655554 33 357899999999
Q ss_pred hhCC-ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 509 KLEP-NIASAFLKFKIYLQ----KNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 509 ~ldp-~~~t~~~~~ki~l~----~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
.++| +....+++..++.. .++..+|++....+......++-.|.
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 9999 77777776666665 34556677776665554333443333
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=4.8e-05 Score=86.85 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=109.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|.-.+..++|++|.+.++.+++++|--. ..+++++.|+++++++..|.++|+.+..++| +...--+....|
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~-------~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQL-------GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccch-------hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 34555678999999999999999887443 3578999999999999999999999999999 666667788899
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILT 600 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~ 600 (733)
++.|+-.+|-.+++...+|+-.+..+=.--...+.+-|..+.+++|...++... .+..++.+...+.+..+....
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~-~~~~d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR-KKYKDDEVLLIIVRTVLEGMT 638 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh-hhcccchhhHHHHHHHHhhcc
Confidence 999999999999999998885444422222344568889999999998888732 222235545555555555444
No 111
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.9e-05 Score=82.31 Aligned_cols=249 Identities=11% Similarity=0.010 Sum_probs=155.8
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHH----H-----HhhccCCChHHHH-HHHHHHHHH-----------HHHHHH
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVS----K-----LDISRISDSDERK-LLLDINIAR-----------SRTAWE 192 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~----~-----~~~~~~~~~~e~~-~~l~~l~~r-----------A~~a~~ 192 (733)
.-..+|+.++-.|++..|+--|+++.-+.+ + ...++.++ .++. -+...|... +-..|.
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~-~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG-CEQDSALMDYLFAKVKYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC-HhhHHHHHHHHHhhhhcchhhhhhhhhhhhh
Confidence 345789999999999999999999975544 1 12233322 1211 122222221 234567
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
..++..|+.+.+|+++++|+.... |.-.|..+...+. +++|+-.|..|..+ .|
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~a-------lilKG~lL~~~~R---~~~A~IaFR~Aq~L---ap-------------- 365 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEA-------LILKGRLLIALER---HTQAVIAFRTAQML---AP-------------- 365 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchH-------HHhccHHHHhccc---hHHHHHHHHHHHhc---ch--------------
Confidence 899999999999999999986543 7778999999999 99999999999988 33
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH-HHHHHhcCCh-HHHHHHHHHhhhccCCchHHH
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA-MKAWLGLGRY-NEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk-~~il~~~g~~-deAi~~l~~~l~~~~~~~~~~ 350 (733)
.+..+++.|..+|+..|.+.+|...-+-.-+.. +....++-+- ..++.-.+.. ++|-+.+...+...|......
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~----~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV 441 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF----QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV 441 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh----hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH
Confidence 345599999999999999999986655544421 1222222221 1233333332 355555555554333333222
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
+..+++.. ...+ .+.++.++++.+ ..-||+
T Consensus 442 ~~~AEL~~--------------------~Eg~-~~D~i~LLe~~L--~~~~D~--------------------------- 471 (564)
T KOG1174|consen 442 NLIAELCQ--------------------VEGP-TKDIIKLLEKHL--IIFPDV--------------------------- 471 (564)
T ss_pred HHHHHHHH--------------------hhCc-cchHHHHHHHHH--hhcccc---------------------------
Confidence 22222111 1111 133444444444 122211
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDV 474 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~ 474 (733)
.+|.. .|...--.+.|++|.+.|..||.++|.++
T Consensus 472 -------~LH~~---Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 472 -------NLHNH---LGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred -------HHHHH---HHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 22333 58888889999999999999999999875
No 112
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.40 E-value=0.00084 Score=76.08 Aligned_cols=355 Identities=13% Similarity=0.072 Sum_probs=198.4
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHH-HHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc-------
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYL-TFAKSALSKNETNSLNDALKLMNEALELCEKGLGEART------- 263 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~-~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~------- 263 (733)
..|+-++|..++..+..-++.++ +|| -+|..+-..++ |.+|++||+.|+.+ ++.+..-
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~--------vCwHv~gl~~R~dK~---Y~eaiKcy~nAl~~---~~dN~qilrDlslL 118 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSH--------VCWHVLGLLQRSDKK---YDEAIKCYRNALKI---EKDNLQILRDLSLL 118 (700)
T ss_pred cccchHHHHHHHHHHhccCcccc--------hhHHHHHHHHhhhhh---HHHHHHHHHHHHhc---CCCcHHHHHHHHHH
Confidence 68999999999999998887765 466 57999888899 99999999999998 5443210
Q ss_pred -------------chhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH--------HHHHHH
Q 004720 264 -------------REETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP--------VLAMKA 322 (733)
Q Consensus 264 -------------~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~--------~lk~~i 322 (733)
.-..-++.+.+-.-|...|.++...|+|..|...++...+.. + ..|+.. .-+..+
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~---~-~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ---N-TSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---c-cCCCHHHHHHHHHHHHHHHH
Confidence 000001111122356677888888899999999988887742 1 234433 344456
Q ss_pred HHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhc-CCCC
Q 004720 323 WLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAG-DEGD 400 (733)
Q Consensus 323 l~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~-~~~s 400 (733)
+...|.+++|.+.+.+.=...-+...+-..-+++++..++ +.|...++.++ .+..+. ...-..+...+. ...+
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll----~rnPdn-~~Yy~~l~~~lgk~~d~ 269 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL----ERNPDN-LDYYEGLEKALGKIKDM 269 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH----hhCchh-HHHHHHHHHHHHHHhhh
Confidence 7777899999988764321111122222233455555555 45555554332 222211 111110001100 0000
Q ss_pred CcchHHHHHHHHHHHHhhhHHH--------HHHHhhcchhHHH-hhHHHHH-------HHHHHHHHHhcCCHHHH-----
Q 004720 401 GVSEAAVKLRAKAVAELVSDER--------VLALFVGDAAAKE-RIAMHAV-------LWNCASILFRSKDYEAS----- 459 (733)
Q Consensus 401 p~~~~~l~~ka~~l~~l~~~e~--------v~~~~~g~~~~~~-~~~~~~l-------lW~~g~~~~k~~~y~~A----- 459 (733)
+ ..+ ++ ++..+-...+ -.....|...... ..++... ++.--...++.-. ..+
T Consensus 270 ~---~~l-k~--ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~-k~~~le~L 342 (700)
T KOG1156|consen 270 L---EAL-KA--LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE-KVAFLEKL 342 (700)
T ss_pred H---HHH-HH--HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh-HhHHHHHH
Confidence 0 000 00 0000000000 0111111111110 0000000 0111122222211 111
Q ss_pred HHHHHHhhc----cCCCC---chhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHH
Q 004720 460 AEMFEKSML----YLPFD---VENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQE 531 (733)
Q Consensus 460 ~~~y~~aL~----~~~~~---~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e 531 (733)
+--|.-.|. +++.| .+.+....-.++-++.-|-.+|+++.|.++++.|+..-| -+--....++|+.+.|+.+
T Consensus 343 vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 343 VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChH
Confidence 111112221 22211 122345556688899999999999999999999999988 5566667889999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 532 GAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 532 ~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+|..-++...+....+.-+-+-|+-.-.+....+.|.+.+.....
T Consensus 423 eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 423 EAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 999999999887544444555778777888888888777766655
No 113
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.37 E-value=1.2e-06 Score=74.08 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 439 MHAVLWNCASILFRSKDYEASAEMFEKSMLYLP-FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 439 ~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~-~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+..++.+.|..++..|+|++|+++|++++.+.. .+. +++..+.++.++|.||..+|++++|++++++|+++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345677899999999999999999999997632 222 24678999999999999999999999999999875
No 114
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.00057 Score=72.27 Aligned_cols=397 Identities=15% Similarity=0.115 Sum_probs=220.5
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHH
Q 004720 111 AADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTA 190 (733)
Q Consensus 111 a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a 190 (733)
|--||+.....+..++ -..-...|-.++.+|+|+.|...|+-+++-. +.+++..+ +-|-+.
T Consensus 41 AislLefk~~~~~EEE-----~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--------~~~~el~v------nLAcc~ 101 (557)
T KOG3785|consen 41 AISLLEFKLNLDREEE-----DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--------DAPAELGV------NLACCK 101 (557)
T ss_pred HHHHHHHhhccchhhh-----HHHHHHHHHHHHhhccHHHHHHHHHHHhccC--------CCCcccch------hHHHHH
Confidence 4456666655544333 2334566778889999999999998887621 12222222 223344
Q ss_pred HHccCHHHHHHHHHHHHhh------h----hcCch------hHHHHHHH---HHHHhHHHHhcCCCCCHHHHHHHHHHHH
Q 004720 191 WEVLEQNLAITLLNRAKCL------L----FGLFE------HYKSLANQ---YLTFAKSALSKNETNSLNDALKLMNEAL 251 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l------~----~~~~~------~~~~La~~---~~~~G~~~~~~~~~~~~e~A~~~l~~Al 251 (733)
.-.|.+.+|...-.+|-+- . -...+ .+..|-+. ...++..++.+-. |.+|+..|++.+
T Consensus 102 FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H---YQeAIdvYkrvL 178 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH---YQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4566666666655544210 0 00000 01111111 1222333334444 666766666655
Q ss_pred HHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHH
Q 004720 252 ELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNE 331 (733)
Q Consensus 252 el~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~de 331 (733)
.- ++ +.. ..-..+|.||.+.+.|+-+.+.++.-... -+..|-+.-+++-.+.++=+...
T Consensus 179 ~d---n~-------------ey~-alNVy~ALCyyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 179 QD---NP-------------EYI-ALNVYMALCYYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRT 237 (557)
T ss_pred hc---Ch-------------hhh-hhHHHHHHHHHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccch
Confidence 43 22 111 24456799999999999999888655542 23555566777766666644444
Q ss_pred HHHHHHHhhhccCCchHHHHhHHHHHHHhc------hhhhHHHHHHHHH-----------hhhccCCchHHHHHHHHHHh
Q 004720 332 AELELRGMVEIKGIPECIWVSAVEAYFQAA------GTAGAETAKGVFL-----------GLLGRCHVSAKAAVRMAHRV 394 (733)
Q Consensus 332 Ai~~l~~~l~~~~~~~~~~ls~~~ly~~~~------~~~a~~~lk~~l~-----------~ll~~~~~~~~~a~~~l~~~ 394 (733)
|..+...++.+.+..-.+ ++-+..|+ .+-|++.+-.++. ..+...+ -..|..++..+
T Consensus 238 ae~E~k~ladN~~~~~~f----~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d--VqeA~~L~Kdl 311 (557)
T KOG3785|consen 238 AEDEKKELADNIDQEYPF----IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND--VQEAISLCKDL 311 (557)
T ss_pred hHHHHHHHHhcccccchh----HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc--HHHHHHHHhhc
Confidence 555555555444322222 12222222 1344444443321 1222222 24555554444
Q ss_pred hcCCCCCcchHHHHHHHHHH----HHhhhHHHHH--HHhh---cchhHH--H---hhHHHHHHHHHHHHHHhcCCHHHHH
Q 004720 395 AGDEGDGVSEAAVKLRAKAV----AELVSDERVL--ALFV---GDAAAK--E---RIAMHAVLWNCASILFRSKDYEASA 460 (733)
Q Consensus 395 l~~~~sp~~~~~l~~ka~~l----~~l~~~e~v~--~~~~---g~~~~~--~---~~~~~~llW~~g~~~~k~~~y~~A~ 460 (733)
+|..|-.+.-|+.+. +++.+.|-+. +-|. |..... + +.+ ++...|-..+|++-+
T Consensus 312 -----~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs-------mAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 312 -----DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS-------MASYFFLSFQFDDVL 379 (557)
T ss_pred -----CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH-------HHHHHHHHHHHHHHH
Confidence 454444444455544 3344443321 1111 222111 1 111 455667778888877
Q ss_pred HHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHH-HHHHHHHhcCCHHHHHHHHH
Q 004720 461 EMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAF-LKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 461 ~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~-~~~ki~l~~gd~e~Al~~l~ 538 (733)
-+.+-.-.++.+|. .-..|+|.++...|.|.+|.+.+-+...-+- +..++. .++++|++.+.-+.|-..+-
T Consensus 380 ~YlnSi~sYF~NdD-------~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 380 TYLNSIESYFTNDD-------DFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHhcCcc-------hhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 66654444444332 2358999999999999999999975433221 333333 47999999999999998886
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 539 AMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 539 ~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
++-...+ .-.+|.+-+++|-+++..-.+.+|+..|=.
T Consensus 453 k~~t~~e-~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 453 KTNTPSE-RFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred hcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 6544322 346899999999999999999999976644
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=1.6e-05 Score=94.10 Aligned_cols=132 Identities=13% Similarity=-0.045 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|.+....|.|++|..|++.++.+.|.+ .....+++.+..+++++++|.+.++++++.+| +...++.++
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDS-------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3457999999999999999999999998844 46789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
.+..+.|.+++|+.+|+++....+.+++.+.--++...+.|..+.|+.+++..++..+.+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 999999999999999999998666667755555688889999999999999988855554
No 116
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.35 E-value=5.1e-06 Score=69.75 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+++|+.++...|.+. .++..++.||...+++++|.++++++.+..| +....+.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA-------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 34689999999999999999999998877542 5789999999999999999999999999999 777888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 004720 522 KIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
.++...|++++|...+......
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHcc
Confidence 9999999999999998877654
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.34 E-value=0.00034 Score=82.28 Aligned_cols=303 Identities=15% Similarity=0.024 Sum_probs=156.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
|..-...|++.+|+..+++..............++..+..+.+++...|= +.+|+.+++++++.+.-...+..-...
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf---~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGF---QKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 44555889999999998888866544334456688888889998888888 888898999988865432111100000
Q ss_pred ----------------hhhhhhcHHHHHHHHHHHHhccCc---HH---HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH
Q 004720 267 ----------------TTELKGLKFKTLRFISAIHLQKGE---YE---SVIKCVRVLREGSFDGGDHHASLPVLAMKAWL 324 (733)
Q Consensus 267 ----------------~~~~~el~~~~l~~La~~yl~~~~---~e---kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~ 324 (733)
-+....+. ++..|-+-....+. -| -+.+|+-..++. -.+|+.++..+.-++
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h--~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-----~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMH--YLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-----AIHMYPWYNLGINYL 786 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHH--HHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-----hhccchHHHHhHHHH
Confidence 00000000 00000000000110 01 123443333332 234555555554444
Q ss_pred h------cCCh--HHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHh-h---------------hccC
Q 004720 325 G------LGRY--NEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLG-L---------------LGRC 380 (733)
Q Consensus 325 ~------~g~~--deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~-l---------------l~~~ 380 (733)
+ .+.+ ..|+..+...++..-++..+|-.++-+ - ..-++...+.++.. + +.-.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-s---g~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-S---GIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-h---ccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 3 2222 257777777765555555555332222 1 11112222222211 0 0000
Q ss_pred CchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc--hhH-HHhhHHHHHHHHHH-HHHHhcCCH
Q 004720 381 HVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD--AAA-KERIAMHAVLWNCA-SILFRSKDY 456 (733)
Q Consensus 381 ~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~--~~~-~~~~~~~~llW~~g-~~~~k~~~y 456 (733)
..+..-+-.++++.- ..+|.+..+|.+++........--....+|. | .+. ++-.....-+|... ..+...|++
T Consensus 863 n~d~E~A~~af~~~q--SLdP~nl~~WlG~Ali~eavG~ii~~~~lfa-Hs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQ--SLDPLNLVQWLGEALIPEAVGRIIERLILFA-HSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred cccHHHhhHHHHhhh--hcCchhhHHHHHHHHhHHHHHHHHHHHHHHH-hhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 001222333444554 4678888888888777665542222222222 2 111 12233344577644 667888999
Q ss_pred HHHHHHHHH------hhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 457 EASAEMFEK------SMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 457 ~~A~~~y~~------aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
++.+.--+. ++..+..+ +|+.+-.|...+.....+++|..|.+.+.+...
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~---~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLG---HPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhc---CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888776664 33333322 256777788888888888888888888877543
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00012 Score=87.69 Aligned_cols=265 Identities=10% Similarity=-0.013 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
++.+..-+..+..+|++++|+..+..+....|..+. .||..|..++.+++ +.++.-. ++++++.....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-------~yy~~G~l~~q~~~---~~~~~lv--~~l~~~~~~~~ 98 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-------ALYISGILSLSRRP---LNDSNLL--NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-------hHHHHHHHHHhhcc---hhhhhhh--hhhhhcccccc
Confidence 344444466788999999999999999998888664 47888888888888 8888755 77777554321
Q ss_pred Ccccchh---hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHH
Q 004720 260 EARTREE---TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELEL 336 (733)
Q Consensus 260 ~~~~~~~---~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l 336 (733)
..-.... ..+..+.+ .+++.||.||-..|++++|...++.+.+. .+.+|.++-.-+-.|... +.++|+..+
T Consensus 99 ~~~ve~~~~~i~~~~~~k-~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 99 WAIVEHICDKILLYGENK-LALRTLAEAYAKLNENKKLKGVWERLVKA----DRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred hhHHHHHHHHHHhhhhhh-HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 1000000 00001111 27888999999999999999999988886 456777665555555555 778888877
Q ss_pred HHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHH
Q 004720 337 RGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAE 416 (733)
Q Consensus 337 ~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~ 416 (733)
.+.+.. |+...+ ......+..+++ ...|++.+.+.+-...+..
T Consensus 173 ~KAV~~--------------~i~~kq---------------------~~~~~e~W~k~~--~~~~~d~d~f~~i~~ki~~ 215 (906)
T PRK14720 173 KKAIYR--------------FIKKKQ---------------------YVGIEEIWSKLV--HYNSDDFDFFLRIERKVLG 215 (906)
T ss_pred HHHHHH--------------HHhhhc---------------------chHHHHHHHHHH--hcCcccchHHHHHHHHHHh
Confidence 655531 221111 012222223333 4556555544221111111
Q ss_pred hhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC
Q 004720 417 LVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL 496 (733)
Q Consensus 417 l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~ 496 (733)
.....++.+ +..-+| +-+.+.++|++++++++.+|++.|.|. +....++.||. +.
T Consensus 216 ~~~~~~~~~-------------~~~~l~---~~y~~~~~~~~~i~iLK~iL~~~~~n~-------~a~~~l~~~y~--~k 270 (906)
T PRK14720 216 HREFTRLVG-------------LLEDLY---EPYKALEDWDEVIYILKKILEHDNKNN-------KAREELIRFYK--EK 270 (906)
T ss_pred hhccchhHH-------------HHHHHH---HHHhhhhhhhHHHHHHHHHHhcCCcch-------hhHHHHHHHHH--HH
Confidence 111111111 111233 346788999999999999999988653 56788899998 44
Q ss_pred HHHHHHHHHHHHhh-----CC-ChHHHHHHHHHHH
Q 004720 497 IDRAQEYITEAEKL-----EP-NIASAFLKFKIYL 525 (733)
Q Consensus 497 ~~~A~e~~~~A~~l-----dp-~~~t~~~~~ki~l 525 (733)
|.. ...+++.+++ .+ ++.-.+..|.-++
T Consensus 271 Y~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 271 YKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred ccC-cchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 433 4445554444 22 3444555555554
No 119
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.7e-06 Score=86.71 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=85.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|+.+|..++|+.|++.|..++-+.| +.++.++|++.||+++++++.+.+.|.+|++++| .+...|.+....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP-------~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINP-------TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCC-------CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 89999999999999999999999876 4467899999999999999999999999999999 799999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcc
Q 004720 525 LQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~ 544 (733)
++...+++||.++....++.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999886554
No 120
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.0087 Score=67.48 Aligned_cols=329 Identities=14% Similarity=0.091 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhh------------------------hcCchhHHHHHHHHHHHhHHHHhcCCC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLL------------------------FGLFEHYKSLANQYLTFAKSALSKNET 237 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~------------------------~~~~~~~~~La~~~~~~G~~~~~~~~~ 237 (733)
++-.||-.+-++|+|++|...|+....-. ...|.....--+.+||.+..+...|+
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk- 190 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK- 190 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc-
Confidence 55567777788888888888877762111 00111112244679999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH-
Q 004720 238 NSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP- 316 (733)
Q Consensus 238 ~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~- 316 (733)
|.+|++.|++|+++|.+...+..+.++.. .+-...+...|+-++...|+-++|...|....+.+ -...|+..
T Consensus 191 --y~qA~elL~kA~~~~~e~l~~~d~~eEei--e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av 263 (652)
T KOG2376|consen 191 --YNQAIELLEKALRICREKLEDEDTNEEEI--EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAV 263 (652)
T ss_pred --HHHHHHHHHHHHHHHHHhhcccccchhhH--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHH
Confidence 99999999999999877544443332211 11123355567888888898899998776666532 11222211
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhh
Q 004720 317 -VLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVA 395 (733)
Q Consensus 317 -~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l 395 (733)
...+-++.+-.++ +..+ ++...+.. + . ... .++
T Consensus 264 ~~NNLva~~~d~~~----------------~d~~---------------~l~~k~~~----~--~----~l~-----~~~ 297 (652)
T KOG2376|consen 264 AVNNLVALSKDQNY----------------FDGD---------------LLKSKKSQ----V--F----KLA-----EFL 297 (652)
T ss_pred Hhcchhhhcccccc----------------CchH---------------HHHHHHHH----H--H----HhH-----HHH
Confidence 1111111111110 0000 00000000 0 0 000 000
Q ss_pred cCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch
Q 004720 396 GDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE 475 (733)
Q Consensus 396 ~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~ 475 (733)
. ..+.. ..-..++-|.+.-.+-.+.-+.+-+ .+...-+.-++
T Consensus 298 ------------l------~~Ls~-----------------~qk~~i~~N~~lL~l~tnk~~q~r~---~~a~lp~~~p~ 339 (652)
T KOG2376|consen 298 ------------L------SKLSK-----------------KQKQAIYRNNALLALFTNKMDQVRE---LSASLPGMSPE 339 (652)
T ss_pred ------------H------HHHHH-----------------HHHHHHHHHHHHHHHHhhhHHHHHH---HHHhCCccCch
Confidence 0 00000 0001122233333333333333332 22222111111
Q ss_pred hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhccC
Q 004720 476 NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N-IASAFLKFKIYLQKNDQEGAINQIL--------AMTICLD 545 (733)
Q Consensus 476 ~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~l~--------~~~~~~~ 545 (733)
....-+++....|-.+ .+.+|.+++...-+-+| + ....+.+..+.+..|+++.|++-+. .+.+...
T Consensus 340 --~~~~~ll~~~t~~~~~--~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 340 --SLFPILLQEATKVREK--KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred --HHHHHHHHHHHHHHHH--HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 1222344444445544 78999999998888888 4 7788889999999999999999998 4444333
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH---hhcCChhHHHH
Q 004720 546 FTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILT---QETGNESEVLK 611 (733)
Q Consensus 546 ~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~---~~~~~~~~~l~ 611 (733)
.|.+....+.+-.+.++..-+...|..-+.-+....+.. ..++++++.+. ...|...+...
T Consensus 416 -~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s----~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 416 -LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS----IALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred -ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc----hHHHhHHHHHhHHHHhcCchHHHHH
Confidence 677777777777776666666666655554333221112 45566666642 22355544333
No 121
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.24 E-value=8.4e-06 Score=68.80 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
..++...+.++..+|++++|+.++++|+++....++....++..++++|.++...|+ +++|..++++|+++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhc
Confidence 356777899999999999999999999999545666667789999999999999999 9999999999999865
No 122
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5e-06 Score=87.01 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
..|+.||+.++|..|++.|+.+|.-...|. .-++-+|.|+|.|.+.+|+|-.|+++|..|++++| +..+.+..+++
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~---dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADP---DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCc---cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 389999999999999999999998776664 47899999999999999999999999999999999 99999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 004720 524 YLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~ 543 (733)
++..+.+++|++-.+.....
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 99999988888776655443
No 123
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.22 E-value=0.00081 Score=71.39 Aligned_cols=340 Identities=17% Similarity=0.086 Sum_probs=197.0
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
+++....+..|...+...++..|+...++-.+-+..+. . .|..|.+-+.+-.++|.+++++.+.---++
T Consensus 3 q~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-~----------Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~ 71 (518)
T KOG1941|consen 3 QDQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-G----------RFRVLGCLVTAHSEMGRYKEMLKFAVSQID 71 (518)
T ss_pred cchhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-H----------HHHHhccchhhhhhhHHHHHHHHHHHHHHH
Confidence 45667788889999999999999988888776554322 1 267777777788888888776665333333
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
.... -.....+-..|.|+.+..-..-+ +.+++.+-+-.+.+ +.+...-.. ..+...++++++..
T Consensus 72 ~a~~-~~ds~~~~ea~lnlar~~e~l~~---f~kt~~y~k~~l~l---pgt~~~~~~---------gq~~l~~~~Ahlgl 135 (518)
T KOG1941|consen 72 TARE-LEDSDFLLEAYLNLARSNEKLCE---FHKTISYCKTCLGL---PGTRAGQLG---------GQVSLSMGNAHLGL 135 (518)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHhcC---CCCCccccc---------chhhhhHHHHhhhH
Confidence 2221 12233455677788777666666 66666655555554 211111011 13555689999999
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHH
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAE 367 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~ 367 (733)
+.|+++++.++.+.++.. +..+|. ...-+|+++..+|..... ++++-
T Consensus 136 s~fq~~Lesfe~A~~~A~--~~~D~~------------------------------LElqvcv~Lgslf~~l~D~~Kal~ 183 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAH--NNDDAM------------------------------LELQVCVSLGSLFAQLKDYEKALF 183 (518)
T ss_pred HHHHHHHHHHHHHHHHhh--ccCCce------------------------------eeeehhhhHHHHHHHHHhhhHHhh
Confidence 999999999887776431 112222 112345555555533222 22222
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHH
Q 004720 368 TAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCA 447 (733)
Q Consensus 368 ~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g 447 (733)
+..
T Consensus 184 f~~----------------------------------------------------------------------------- 186 (518)
T KOG1941|consen 184 FPC----------------------------------------------------------------------------- 186 (518)
T ss_pred hhH-----------------------------------------------------------------------------
Confidence 221
Q ss_pred HHHHhcCCHHHHHHHHHHhhccC----CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CC--ChHH
Q 004720 448 SILFRSKDYEASAEMFEKSMLYL----PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-----EP--NIAS 516 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~----~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-----dp--~~~t 516 (733)
+|.++. -.|... ..++-+++.++..+-.+|.+..|.++|++|-++ |. +..+
T Consensus 187 -----------------kA~~lv~s~~l~d~~~-kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc 248 (518)
T KOG1941|consen 187 -----------------KAAELVNSYGLKDWSL-KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARC 248 (518)
T ss_pred -----------------hHHHHHHhcCcCchhH-HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence 111110 011110 234566788899999999999999999999777 22 4455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc----CC--ChHHHHHHHH--HHHHcCCH---HHHHHHHHHHHhhhcCCCCCc
Q 004720 517 AFLKFKIYLQKNDQEGAINQILAMTICL----DF--TTDFLSLAAH--EAVACQAL---SVAVAALSNLLNFYTSGKPMP 585 (733)
Q Consensus 517 ~~~~~ki~l~~gd~e~Al~~l~~~~~~~----~~--~~~lL~la~~--~a~~~~~~---~~a~~aL~~Ll~~~~~~~~~~ 585 (733)
...++.||-..||.|.|...|+...... |. ....|.-++. +..+..++ -.++..-+.+++.-++- ..
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I--G~ 326 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI--GA 326 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh--hh
Confidence 5678999999999999998887765443 21 1112211111 11111111 11444445666622211 02
Q ss_pred hhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcc
Q 004720 586 TKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIG 624 (733)
Q Consensus 586 ~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~ 624 (733)
.+++-=+||....|=+..|..|+.=.++.+|.+...+.+
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~~ 365 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEETE 365 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 233333444444444556788888888888888776653
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.20 E-value=2e-05 Score=77.37 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+...|+|++|+.+|+.++...|.. .+.+.++.++|.+|.++|++++|++++.++++.+| ++...+.+.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDP----NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4468999999999999999999999876643 24567899999999999999999999999999999 787777888
Q ss_pred HHHHhcCCHHHHHH
Q 004720 522 KIYLQKNDQEGAIN 535 (733)
Q Consensus 522 ki~l~~gd~e~Al~ 535 (733)
.++...|+.+.|..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 88888877554443
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.20 E-value=2.2e-05 Score=76.68 Aligned_cols=91 Identities=14% Similarity=-0.034 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|..+...|+|++|+.+|+.++.+.|.. ...+.++.++|.+|...|++++|++++++|++++| +..+.+.+..+
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~----~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDP----YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccc----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 47899999999999999999999876532 34566899999999999999999999999999999 77777777777
Q ss_pred HH-------hcCCHHHHHHHHHH
Q 004720 524 YL-------QKNDQEGAINQILA 539 (733)
Q Consensus 524 ~l-------~~gd~e~Al~~l~~ 539 (733)
+. ..|+++.|+..++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 77 77777755555543
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.19 E-value=0.00027 Score=75.52 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH-H
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ-E 531 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~-e 531 (733)
.+|++|.-.|+.-..-++ ...+++..++.|++.+|+|++|.+.+.+|+..+| ++.+..++.-+....|+. +
T Consensus 181 e~~~~A~y~f~El~~~~~-------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFG-------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp TCCCHHHHHHHHHHCCS---------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred hhHHHHHHHHHHHHhccC-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 479999999999655443 2357889999999999999999999999999999 899999999999999988 6
Q ss_pred HHHHHHHHHHhccCCChHHHHH
Q 004720 532 GAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 532 ~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.+-+.+..+....+.+|=+..+
T Consensus 254 ~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHH
Confidence 6667777777776666643333
No 127
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.18 E-value=8.1e-06 Score=66.38 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
..|..+++.|+|++|++.|+.++...|. ...+++.+|.|+...|++++|+++++++++.+| ++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-------NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4789999999999999999999998764 456899999999999999999999999999999 54
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=7.8e-05 Score=69.53 Aligned_cols=111 Identities=13% Similarity=-0.042 Sum_probs=96.3
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
.|..++...|.+ ......++.+|+..|++++|.+.++++...+| ++...+.+..++...|++++|+..++..
T Consensus 5 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 5 TLKDLLGLDSEQ-------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHcCChhh-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677766533 45688999999999999999999999999999 8999999999999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 541 TICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 541 ~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
....+.+++.....+......|+.+.|+..++..++...
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 888877888777777788889999999999999998443
No 129
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.7e-05 Score=82.22 Aligned_cols=122 Identities=17% Similarity=0.159 Sum_probs=100.4
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
..|...-..|+.+++.++ |..|..-|++|+..++...+... +.......++..++.+|+.||++.+.|.+|+...
T Consensus 206 ~~A~~~ke~Gn~~fK~gk---~~~A~~~Yerav~~l~~~~~~~~--ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c 280 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGK---FKLAKKRYERAVSFLEYRRSFDE--EEQKKAEALKLACHLNLAACYLKLKEYKEAIESC 280 (397)
T ss_pred HHHHHHHHhhhHHHhhch---HHHHHHHHHHHHHHhhccccCCH--HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Confidence 355667788999999999 99999999999999875433221 2333446677889999999999999999999998
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
+.++.. .+.++-++|-++++++..|+|+.|+..+++++...|.+-.+
T Consensus 281 ~kvLe~----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 281 NKVLEL----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHHhc----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 888875 56788999999999999999999999999999655544444
No 130
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.16 E-value=6.2e-06 Score=67.81 Aligned_cols=65 Identities=23% Similarity=0.235 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcc
Q 004720 480 RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN-DQEGAINQILAMTICL 544 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g-d~e~Al~~l~~~~~~~ 544 (733)
+|..+.++|.++...|++++|+++|+++++++| ++...+.+..++...| ++++|++++++..++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999 8999999999999999 7999999999988763
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.16 E-value=5.6e-05 Score=89.56 Aligned_cols=123 Identities=9% Similarity=0.017 Sum_probs=77.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
|.+....|.+++|+..++++.++.|++.. +..+++..+.+.+. +++|..+++++++. +|.+
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-------a~~~~a~~L~~~~~---~eeA~~~~~~~l~~---~p~~------ 153 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSE-------AFILMLRGVKRQQG---IEAGRAEIELYFSG---GSSS------ 153 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHhcc---HHHHHHHHHHHhhc---CCCC------
Confidence 55566666777777777777766666442 35566666666666 67777666666666 3311
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
+..+..+|.+..+.|.|++|+.+|+.+... ++.++.+++-.+.++...|+.++|...+++.+
T Consensus 154 --------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 154 --------AREILLEAKSWDEIGQSEQADACFERLSRQ----HPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred --------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 224555666666667777777666666652 34556666666666666677776666666655
No 132
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.002 Score=66.92 Aligned_cols=275 Identities=17% Similarity=0.185 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH---
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP--- 316 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~--- 316 (733)
|++++++++.-.+- .+. ....+..||-||....+|..|-.||+.+-. .+|.-.
T Consensus 26 y~DaI~~l~s~~Er---~p~--------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-------l~P~~~qYr 81 (459)
T KOG4340|consen 26 YADAIQLLGSELER---SPR--------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQ-------LHPELEQYR 81 (459)
T ss_pred HHHHHHHHHHHHhc---Ccc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hChHHHHHH
Confidence 88888777654443 221 112688899999999999999999999865 566643
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhc
Q 004720 317 VLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAG 396 (733)
Q Consensus 317 ~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~ 396 (733)
+-...-+++.+.+.+|+..+.++..++. -.+-++. ++..- + +
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~~~-L~~~~lq-------------LqaAI------------------k----Y-- 123 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDNPA-LHSRVLQ-------------LQAAI------------------K----Y-- 123 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCHH-HHHHHHH-------------HHHHH------------------h----c--
Confidence 5556677888999999998776643211 1110100 00000 0 0
Q ss_pred CCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh
Q 004720 397 DEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN 476 (733)
Q Consensus 397 ~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~ 476 (733)
.+.|...+ ..+-+... |.... ..+-|.|...|+.|+|+.|++-|+.++.+-.-++
T Consensus 124 --se~Dl~g~-----rsLveQlp---------~en~A-------d~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-- 178 (459)
T KOG4340|consen 124 --SEGDLPGS-----RSLVEQLP---------SENEA-------DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-- 178 (459)
T ss_pred --ccccCcch-----HHHHHhcc---------CCCcc-------chhccchheeeccccHHHHHHHHHHHHhhcCCCc--
Confidence 00000000 00001000 00001 1233689999999999999999999998765442
Q ss_pred hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hhCC--ChH------------------------HHHHHHHHHHh
Q 004720 477 RILRAKSFRVLCLCYLGLSLIDRAQEYITEAE----KLEP--NIA------------------------SAFLKFKIYLQ 526 (733)
Q Consensus 477 ~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~----~ldp--~~~------------------------t~~~~~ki~l~ 526 (733)
-+-+|+++||.+.++++.|.++..+.. +-.| .+- ...+.|-|+.+
T Consensus 179 -----llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 179 -----LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred -----hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 245999999999999999998877654 3344 221 01246788888
Q ss_pred cCCHHHHHHHHHHHHhccCC--Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhc
Q 004720 527 KNDQEGAINQILAMTICLDF--TT-DFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQET 603 (733)
Q Consensus 527 ~gd~e~Al~~l~~~~~~~~~--~~-~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~ 603 (733)
.||++-|.+.+-.|---.+. +| ++..+|...+ .+..-.-..-|..|++. .|.|.+..+- ++-+.-+.
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~--~~~p~~g~~KLqFLL~~----nPfP~ETFAN---lLllyCKN- 323 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM--DARPTEGFEKLQFLLQQ----NPFPPETFAN---LLLLYCKN- 323 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc--cCCccccHHHHHHHHhc----CCCChHHHHH---HHHHHhhh-
Confidence 99998888776444221111 22 3444443322 12222223445566663 3456655442 21111111
Q ss_pred CChhHHHHHHHHHHHHhhhc
Q 004720 604 GNESEVLKYMKRAHARTSEI 623 (733)
Q Consensus 604 ~~~~~~l~~~~~A~~~l~~~ 623 (733)
+||..|...+.+.
T Consensus 324 -------eyf~lAADvLAEn 336 (459)
T KOG4340|consen 324 -------EYFDLAADVLAEN 336 (459)
T ss_pred -------HHHhHHHHHHhhC
Confidence 4677777777654
No 133
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0013 Score=69.68 Aligned_cols=214 Identities=16% Similarity=0.201 Sum_probs=126.1
Q ss_pred ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhH
Q 004720 287 QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGA 366 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~ 366 (733)
...+|..|+.+++..+... .+.+.+.....+.|+..+|+|.+|...+..++...+.+..++++++..++-.+. .
T Consensus 34 s~rDytGAislLefk~~~~---~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y 107 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLD---REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---Y 107 (557)
T ss_pred hcccchhHHHHHHHhhccc---hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---H
Confidence 3457999999988877632 233345668889999999999999999988887777778888887765543332 0
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNC 446 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~ 446 (733)
...+.+ ..++. .+....+++-++- -++..++++..... .+..+.. .-+ ..
T Consensus 108 ~eA~~~----~~ka~-k~pL~~RLlfhla-------------------hklndEk~~~~fh~--~LqD~~E--dqL--SL 157 (557)
T KOG3785|consen 108 IEAKSI----AEKAP-KTPLCIRLLFHLA-------------------HKLNDEKRILTFHS--SLQDTLE--DQL--SL 157 (557)
T ss_pred HHHHHH----HhhCC-CChHHHHHHHHHH-------------------HHhCcHHHHHHHHH--HHhhhHH--HHH--hH
Confidence 111100 00111 1112222221111 11111111111111 0000000 000 16
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
+..+|..-.|++||+.|+..|...| +.--+--++|+||.++.=|+-+.+++.--++.-| ++...-+.+-...
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~-------ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNP-------EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCh-------hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 7888999999999999999987654 3334567899999999999999999999999988 6655444433333
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 004720 526 QKNDQEGAINQILAMTIC 543 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~ 543 (733)
+.=+-.-|....+.+..-
T Consensus 231 Rl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADN 248 (557)
T ss_pred hhhccchhHHHHHHHHhc
Confidence 322223344444555443
No 134
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.10 E-value=0.0047 Score=66.75 Aligned_cols=291 Identities=15% Similarity=0.031 Sum_probs=169.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHH-hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTF-AKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~-G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
+-..+..|+|.+|+..+.|+.+..+. | .+.|-. +...-.+|| ++.+=.|+.++-+. .+ +.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~-p-------~l~~l~aA~AA~qrgd---~~~an~yL~eaae~---~~-~~---- 151 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQ-P-------VLAYLLAAEAAQQRGD---EDRANRYLAEAAEL---AG-DD---- 151 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcc-h-------HHHHHHHHHHHHhccc---HHHHHHHHHHHhcc---CC-Cc----
Confidence 44556789999999999998765443 2 123333 345567788 99999999998886 21 11
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC-
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG- 344 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~- 344 (733)
...+....+...+..++++.|..-++.+.+. .+.+|.++-+..++|...|++++....+..+-+..-
T Consensus 152 --------~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 152 --------TLAVELTRARLLLNRRDYPAARENVDQLLEM----TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred --------hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh----CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 1124556688889999999999999888875 578999999999999999999998888765542110
Q ss_pred CchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 345 IPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
..+.+ .-++ .+++..+++....+.++.+-..+| +.
T Consensus 220 ~~~e~-----------------~~le-------------~~a~~glL~q~~~~~~~~gL~~~W-------~~-------- 254 (400)
T COG3071 220 SDEEA-----------------ARLE-------------QQAWEGLLQQARDDNGSEGLKTWW-------KN-------- 254 (400)
T ss_pred ChHHH-----------------HHHH-------------HHHHHHHHHHHhccccchHHHHHH-------Hh--------
Confidence 11111 1111 133333444432100000000111 00
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
.+.....-..+.=..+..+..-|++++|.+|...+|.-.-.+ . +.+- .-.++.++...=++..
T Consensus 255 -------~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-----~---L~~~--~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 255 -------QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-----R---LCRL--IPRLRPGDPEPLIKAA 317 (400)
T ss_pred -------ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-----h---HHHH--HhhcCCCCchHHHHHH
Confidence 000000000111124566678888888888888888532211 1 1111 1124456666666666
Q ss_pred HHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004720 505 TEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAAL 571 (733)
Q Consensus 505 ~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL 571 (733)
++.++.+| ++...+.+..++.+.+.+.+|-+.++...+..++..|...+| +.-.+.|....+...-
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la-~~~~~~g~~~~A~~~r 384 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA-DALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH-HHHHHcCChHHHHHHH
Confidence 66667777 565556667777777777777777776666555555555554 3344455555554333
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.09 E-value=3e-05 Score=85.43 Aligned_cols=111 Identities=16% Similarity=0.077 Sum_probs=91.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
|..+|..+...|+++.|+..|.+|+.+.|..+. +++++|.+++..|+ +++|+..+++++++ ++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~-------a~~~~a~~~~~~g~---~~eAl~~~~~Al~l---~P~~-- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE-------LYADRAQANIKLGN---FTEAVADANKAIEL---DPSL-- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CcCC--
Confidence 445688888999999999999999999998663 58899999999999 99999999999999 5422
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWL 324 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~ 324 (733)
..++..+|.+|...|+|++|+.+++.+.++ .+.++....+..+|..
T Consensus 70 ------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l----~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 70 ------------AKAYLRKGTACMKLEEYQTAKAALEKGASL----APGDSRFTKLIKECDE 115 (356)
T ss_pred ------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Confidence 226888999999999999999999999986 4566666555555433
No 136
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.07 E-value=0.00053 Score=69.37 Aligned_cols=192 Identities=14% Similarity=0.129 Sum_probs=109.6
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
+..+|..|...+..|+ |.+|+..|++........ . .-..++..+|.+|...|+|+.|+..++.
T Consensus 5 ~~~lY~~a~~~~~~g~---y~~Ai~~f~~l~~~~P~s---~-----------~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 5 AEALYQKALEALQQGD---YEEAIKLFEKLIDRYPNS---P-----------YAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp HHHHHHHHHHHHHCT----HHHHHHHHHHHHHH-TTS---T-----------THHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCC---h-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4569999999999999 999999999988873322 1 2234677889999999999999999988
Q ss_pred HHccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 301 LREGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 301 a~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
.... .+.||. +.|+.+.++......- . ....+ ... ...|+..++.+
T Consensus 68 fi~~----yP~~~~~~~A~Y~~g~~~~~~~~~~--~------~~~~D-~~~-------------~~~A~~~~~~l----- 116 (203)
T PF13525_consen 68 FIKL----YPNSPKADYALYMLGLSYYKQIPGI--L------RSDRD-QTS-------------TRKAIEEFEEL----- 116 (203)
T ss_dssp HHHH-----TT-TTHHHHHHHHHHHHHHHHHHH--H-------TT----HH-------------HHHHHHHHHHH-----
T ss_pred HHHH----CCCCcchhhHHHHHHHHHHHhCccc--h------hcccC-hHH-------------HHHHHHHHHHH-----
Confidence 7764 245554 3355555444331000 0 00000 000 01122222211
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
++++ ..|+--.++ ..+...+..... -=-+..|.-+++.|+|.
T Consensus 117 -------------i~~y---P~S~y~~~A-~~~l~~l~~~la---------------------~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 117 -------------IKRY---PNSEYAEEA-KKRLAELRNRLA---------------------EHELYIARFYYKRGKYK 158 (203)
T ss_dssp -------------HHH----TTSTTHHHH-HHHHHHHHHHHH---------------------HHHHHHHHHHHCTT-HH
T ss_pred -------------HHHC---cCchHHHHH-HHHHHHHHHHHH---------------------HHHHHHHHHHHHcccHH
Confidence 1122 111101000 011111111101 01123788999999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
-|+.-|+..+.-+|.-. ........++.+|.++|+.+.|.+
T Consensus 159 aA~~r~~~v~~~yp~t~----~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTP----AAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999998653 455678899999999999885543
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=98.05 E-value=2.7e-05 Score=74.91 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
..|...|.+|+|++|..+|+.-....|.+ .+-...||.||..+++|++|+..|..|.-+++ +|...|....+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYN-------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 47889999999999999999876666654 34679999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 004720 524 YLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~ 543 (733)
++..|+.+.|+.|++.....
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999888774
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00014 Score=69.37 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=98.2
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
..+..|+...+...+++...-.|.++ +-....+.+|..++..|+ +++|...|+++++- .+.
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~----ya~~A~l~lA~~~~~~g~---~~~A~~~l~~~~~~---~~d--------- 80 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSP----YAALAALQLAKAAYEQGD---YDEAKAALEKALAN---APD--------- 80 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhh---CCC---------
Confidence 34468888888888888887666653 234557778999999999 99999999998885 321
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
..++..+...|+.+++..|+|++|+..++.+.. ....|....+++.|+...|++++|+..++..
T Consensus 81 --~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 81 --PELKPLARLRLARILLQQGQYDEALATLQQIPD-----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 234445666799999999999999999876543 4456777799999999999999999998754
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.04 E-value=0.00017 Score=75.09 Aligned_cols=192 Identities=10% Similarity=-0.008 Sum_probs=123.6
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
........|...++.|+|+.|+..|++..+..|.. +. ........|.++...|+++.|+..+++.+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------~~-----a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG------PY-----SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45567788999999999999999999988765410 01 01233455778889999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCC-------------C--CHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNET-------------N--SLNDALKLMNEALELCEKGLGEARTREETTELKGLKF 275 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~-------------~--~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~ 275 (733)
|+.|+ ...++|..|.++...+++ | ...+|+.-|++.++-.+..+-..........+.+..+
T Consensus 100 P~~~~----~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 100 PTHPN----IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred cCCCc----hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 99775 456889899876444311 1 0234556666655552221100001111111222223
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHc-cCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 276 KTLRFISAIHLQKGEYESVIKCVRVLRE-GSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 276 ~~l~~La~~yl~~~~~ekAl~~l~~a~~-~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
.--...|.-|++.|.|.-|+.-++.+.. .+. .+..+.+++...+++..+|..++|......+
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~--t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD--TQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3333567778888888888877766665 321 2333456688888999999988888776543
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0011 Score=68.95 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=120.0
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
...|..|...+..|+ |++|+..|++.... .|.. +........||.+|+..++|++|+..++..
T Consensus 33 ~~~Y~~A~~~~~~g~---y~~Ai~~f~~l~~~---yP~s-----------~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 33 SEIYATAQQKLQDGN---WKQAITQLEALDNR---YPFG-----------PYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCC-----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 348889999999999 99999999998887 4321 223346778999999999999999999988
Q ss_pred HccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhccC-CchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 302 REGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEIKG-IPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 302 ~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~~~-~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
.+.. +.||. +.|+++.+....+.. -+..+.. +...+ ++.. ...|+..++
T Consensus 96 i~~~----P~~~~~~~a~Y~~g~~~~~~~~~--~~~~~~~-~~~~~rD~~~-------------~~~A~~~~~------- 148 (243)
T PRK10866 96 IRLN----PTHPNIDYVLYMRGLTNMALDDS--ALQGFFG-VDRSDRDPQH-------------ARAAFRDFS------- 148 (243)
T ss_pred HHhC----cCCCchHHHHHHHHHhhhhcchh--hhhhccC-CCccccCHHH-------------HHHHHHHHH-------
Confidence 8863 45554 446666554333210 0000000 00000 0000 011122222
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHH--HHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAV--KLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD 455 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l--~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~ 455 (733)
+++ +.-|+..-.- ..+...+...... |- +.-|.-+++.|+
T Consensus 149 ---------------~li--~~yP~S~ya~~A~~rl~~l~~~la~-------------------~e--~~ia~~Y~~~~~ 190 (243)
T PRK10866 149 ---------------KLV--RGYPNSQYTTDATKRLVFLKDRLAK-------------------YE--LSVAEYYTKRGA 190 (243)
T ss_pred ---------------HHH--HHCcCChhHHHHHHHHHHHHHHHHH-------------------HH--HHHHHHHHHcCc
Confidence 222 1112110000 0111111111110 11 136888999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYIT 505 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~ 505 (733)
|.-|+.=|+..+.-+|.- +...+.+..+...|..+|..++|.+...
T Consensus 191 y~AA~~r~~~v~~~Yp~t----~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDT----QATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred hHHHHHHHHHHHHHCCCC----chHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999988855 3566789999999999999999988765
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.99 E-value=1.3e-05 Score=65.71 Aligned_cols=67 Identities=28% Similarity=0.435 Sum_probs=54.5
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 450 LFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 450 ~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+++.|+|++|++.|+.++..+|.+ ..+...++.||++.|++++|.+.++++...+| ++..+.++.+|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 357899999999999999888755 35678999999999999999999999999999 56655555543
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.95 E-value=0.00013 Score=69.96 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
++.+...|-.....|+++.|...++-...++|.++.. ++++|.++..+|+ |++|+..|++|+.+ ++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y-------~~gLG~~~Q~~g~---~~~AI~aY~~A~~L---~~d 101 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY-------WFRLGECCQAQKH---WGEAIYAYGRAAQI---KID 101 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHHhh---HHHHHHHHHHHHhc---CCC
Confidence 3334444555567788888888888888777776543 6778888888888 88888888888877 543
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
+.+ ...++|.||+..|+.+.|.++++.+...
T Consensus 102 dp~--------------~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 102 APQ--------------APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred Cch--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 331 5667788888888888888887777664
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.94 E-value=5.8e-05 Score=64.80 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=61.5
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
.+|+++.|+..++++....|.+++ ...++.+|.+++..|+ |++|+.++++ .+. ++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~-----~~~~~~la~~~~~~~~---y~~A~~~~~~-~~~---~~------------- 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPN-----SAYLYNLAQCYFQQGK---YEEAIELLQK-LKL---DP------------- 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHH-----HHHHHHHHHHHHHTTH---HHHHHHHHHC-HTH---HH-------------
T ss_pred CCccHHHHHHHHHHHHHHCCCChh-----HHHHHHHHHHHHHCCC---HHHHHHHHHH-hCC---CC-------------
Confidence 368999999999999999886432 2356678999999999 9999988888 433 11
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
....+...+|.|+++.|+|++|+++++.+
T Consensus 56 -~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 -SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 01225556799999999999999888753
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00025 Score=63.92 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---hHHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKNDQEGAINQILAMTICLDFT---TDFLSLA 554 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~---~~lL~la 554 (733)
+.++.++..+.+.|++++|.+.+.++.+.+| + +...+.+..++...|++++|++.++.+....+.+ ++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5789999999999999999999999999988 5 3577889999999999999999999998765433 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 555 AHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 555 ~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+....+.++...++..++.+++..+.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 667777899999999999999965443
No 145
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=8.5e-05 Score=72.90 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
..+.-+...++-||.+++.|.|..|..-|+.|++.++... ..++. =+|++||++.+.+++.+.|+..++||
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~------~e~rs---Ily~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS------TEERS---ILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc------HHHHH---HHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 3355668888999999999999999999999999997533 22222 26779999999999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+++.|...+... ..+..|-+..+ |++|+.-|++.+++
T Consensus 161 iel~pty~kAl~-------RRAeayek~ek---~eealeDyKki~E~ 197 (271)
T KOG4234|consen 161 IELNPTYEKALE-------RRAEAYEKMEK---YEEALEDYKKILES 197 (271)
T ss_pred HhcCchhHHHHH-------HHHHHHHhhhh---HHHHHHHHHHHHHh
Confidence 999998665533 34444556666 99999999999998
No 146
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.00041 Score=71.02 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=102.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|..++..|+|.+|+.-++++....|.|. +.+.-++.+|.++|+++.|...|.+|+++.| ++...-++.-.+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~-------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDW-------EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCCh-------hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 78999999999999999999999988664 5688999999999999999999999999999 899899999999
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAAL 571 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL 571 (733)
+..||.+.|...+.........++.+..-.+..-...|+.+.|...-
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999998887766654444444445688888886433
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00017 Score=70.50 Aligned_cols=116 Identities=15% Similarity=0.019 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
...+.+......|..+...|+++.|...|++|+...+. +. + ....+...+.++...|++++|+.++.++
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------~~-~---~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-------PY-D---RSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------ch-h---hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33457788888999999999999999999999987431 00 0 0135566688899999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEK 256 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~ 256 (733)
..+.|..+.....++.++++.|..+...|+ ++.|..++.+++.+.++
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGD---SEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHccc---HHHHHHHHHHHHHHHHH
Confidence 999998887788899999999999999999 99999999988887555
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.85 E-value=0.00019 Score=59.92 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVAC 561 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~ 561 (733)
++++++.++...|++++|...++++.+..| +....+....++...|++++|+++++......+.+++.....+......
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 578899999999999999999999999999 7778888999999999999999999999888776666655555666777
Q ss_pred CCHHHHHHHHHHHHh
Q 004720 562 QALSVAVAALSNLLN 576 (733)
Q Consensus 562 ~~~~~a~~aL~~Ll~ 576 (733)
|+.+.+...+...++
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 788888777776665
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=5.9e-05 Score=61.22 Aligned_cols=63 Identities=17% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 486 VLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 486 ~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
.+|..|++.|++++|++.|+++++.+| ++...+.+..++.+.|++++|+..++.+....+.+|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578899999999999999999999999 899999999999999999999999999988766554
No 150
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00022 Score=72.07 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc--------CCCCchhhh----hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLY--------LPFDVENRI----LRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~--------~~~~~~~~~----~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
++-..||.+|+.|+|.+|...|..|+.. -|-++ .|. .+.-++-|.+.|+++.|+|=++++.+.+.++
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh-HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3446999999999999999999998732 13221 122 3455799999999999999999999999999
Q ss_pred hCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 510 LEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 510 ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.+| ++.++|.++|.+..--|.++|-..+..+..+.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 999 99999999999999999999999998888773
No 151
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=6.3e-05 Score=78.92 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=89.4
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
++..+.+-||.+++.++|..|..+|++++.--. +++.+..-+|.+||++-.-.|+|..|+.++++++.++
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc----------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~ 149 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC----------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK 149 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC----------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999986421 2233445678899999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
|...+. ||.-+++++..+. +.+|+.|.+..+.+
T Consensus 150 P~h~Ka-------~~R~Akc~~eLe~---~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 150 PTHLKA-------YIRGAKCLLELER---FAEAVNWCEEGLQI 182 (390)
T ss_pred cchhhh-------hhhhhHHHHHHHH---HHHHHHHHhhhhhh
Confidence 986654 8888889999999 99999999999887
No 152
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.75 E-value=0.00013 Score=60.43 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=50.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.++++.++|+.|+++++.++...|.+. ..++.+|.||..+|++++|.++++++++.+| ++.....+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDP-------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccc-------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467788888888888888888877543 4677888888888888888888888888888 555444443
No 153
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.12 Score=57.28 Aligned_cols=316 Identities=15% Similarity=0.038 Sum_probs=183.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
.+.-|+--.+.|+...|...|++|.+...+. ..-..++..++.---.++. |+.|...|+=|++-+.++.
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d----~~~e~lfvaFA~fEe~qkE---~ERar~iykyAld~~pk~r---- 278 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDD----EEAEILFVAFAEFEERQKE---YERARFIYKYALDHIPKGR---- 278 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCccc----
Confidence 3344667778899999999999999865431 1122334466776667777 9999999999999865542
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH-----HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKC-----VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~-----l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
.+...+-+...-.-|.+....+.++-. |+....- ++.+-.++|.-+++....|+.+.-.+.+.
T Consensus 279 --------aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~----np~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 279 --------AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK----NPYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred --------HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh----CCCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111222333333334433345555421 2222221 45666677888888888899999888898
Q ss_pred HhhhccCC-chHH-HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 338 GMVEIKGI-PECI-WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 338 ~~l~~~~~-~~~~-~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+.|.++|. .+.- |-+.+-+.+.-. .+.. +.-.++ ..+..|-..++ +.-| |...-+
T Consensus 347 rAIanvpp~~ekr~W~RYIYLWinYa------lyeE-----le~ed~--ertr~vyq~~l--~lIP-HkkFtF------- 403 (677)
T KOG1915|consen 347 RAIANVPPASEKRYWRRYIYLWINYA------LYEE-----LEAEDV--ERTRQVYQACL--DLIP-HKKFTF------- 403 (677)
T ss_pred HHHccCCchhHHHHHHHHHHHHHHHH------HHHH-----HHhhhH--HHHHHHHHHHH--hhcC-cccchH-------
Confidence 88876653 3332 333332221110 0000 000010 11111112222 1222 111000
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHH-HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNC-ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL 494 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~-g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l 494 (733)
+=+|-+ +.-...+.+...|-...-.|+...|.+ |+++.-.-.-++|
T Consensus 404 -------------------------aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~--------KlFk~YIelElqL 450 (677)
T KOG1915|consen 404 -------------------------AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD--------KLFKGYIELELQL 450 (677)
T ss_pred -------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch--------hHHHHHHHHHHHH
Confidence 113432 233356677777777777777766643 6777777777788
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CChHHHHH-HHHHHHHcCCHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD-FTTDFLSL-AAHEAVACQALSVAVAAL 571 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~-~~~~lL~l-a~~~a~~~~~~~~a~~aL 571 (733)
+++|+....|++-+..+| +-.+-.-.+.+-...||+|.|...++-..+.+. .-|.+|-- -+.+-.++|..+.+.+..
T Consensus 451 ~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 888888888888888888 544444445555567888888777777766653 24554333 355555677777787777
Q ss_pred HHHHhh
Q 004720 572 SNLLNF 577 (733)
Q Consensus 572 ~~Ll~~ 577 (733)
+.||+.
T Consensus 531 erlL~r 536 (677)
T KOG1915|consen 531 ERLLDR 536 (677)
T ss_pred HHHHHh
Confidence 777773
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.00035 Score=73.45 Aligned_cols=98 Identities=16% Similarity=0.034 Sum_probs=82.3
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHHH
Q 004720 445 NCASIL-FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAFL 519 (733)
Q Consensus 445 ~~g~~~-~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~~ 519 (733)
+.+..+ ++.|+|++|+..|+..+..+|.+. .....++.+|.+|...|++++|...|.++.+..| + +...+.
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345544 677999999999999999999763 3456789999999999999999999999998887 4 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
+..++...|+.++|+..|+.+.+..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 788888999999999999999877554
No 155
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.73 E-value=0.0015 Score=66.18 Aligned_cols=186 Identities=14% Similarity=0.101 Sum_probs=114.7
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
.......|...+..|+|..|+..|++.+...|.- +-. -+.....|.++...|+++.|+..+++-+...|
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------~~a-----~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------PYA-----PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------TTH-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------hHH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3556788999999999999999999998775520 111 13344557788899999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCC--------CCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNE--------TNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISA 283 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~--------~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~ 283 (733)
..+. ...++|.+|.+++...+ ..+..+|...|+..++-....+-..........+.+..+.--..+|.
T Consensus 74 ~~~~----~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 74 NSPK----ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp T-TT----HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc----hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8664 45678888888766532 11145666666666665333211111111122233333444455688
Q ss_pred HHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHH
Q 004720 284 IHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAE 333 (733)
Q Consensus 284 ~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi 333 (733)
-|++.|.|.-|+..++.+.+-.++ .+..+.+++..++++.++|..+.|.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~-t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPD-TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhCChHHHH
Confidence 889999999998888777763210 1111234477788888888777443
No 156
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.70 E-value=0.00019 Score=59.56 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=61.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 488 CLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 488 a~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
...|++.+++++|.++++++++++| ++...+.++.++...|++++|+++++++.+..+.+++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4678999999999999999999999 899999999999999999999999999999988777755544
No 157
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.69 E-value=5.4e-05 Score=83.26 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+-++++..|+.++|+.|++.|.++++..| +.|-++-+++++|++.++|..|..++.+|+++|| .+..++.+.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldp-------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDP-------NCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCC-------cceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Confidence 33589999999999999999999999976 4466788999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQAL 564 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~ 564 (733)
...+..+.+-+|+..++....+.+.+|++... .++|..+...
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~-~~Ec~~~vs~ 121 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRK-IDECNKIVSE 121 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999988986655 5777764443
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.0018 Score=61.64 Aligned_cols=123 Identities=16% Similarity=0.053 Sum_probs=84.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC----hHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN----IASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~----~~t~~~~~ 521 (733)
.....+..+++..+.+.++.-..-+|... -.......++.++...|++++|++.+++++...|+ +...+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~----ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSP----YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44555577888887777777666666442 23345566778888888888888888887776542 34566678
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSN 573 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~ 573 (733)
++++..|++++|+..++.+.. ..+.+....+-..+....|+.+.|+.+++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888888887766322 345566666667777778888888777653
No 159
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.67 E-value=0.0016 Score=69.56 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|..++..|+|++|++.+..+ + .-.+.--...+|++.+++|.|.+.++++.+.+. ++.+++...-+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~------~------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG------G------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT------T------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc------C------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 678889999999998877654 1 113445567899999999999999999999998 899998877777
Q ss_pred HhcC--CHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 525 LQKN--DQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 525 l~~g--d~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+..| ++++|...|+.+..-.+.+|.++..-+.-.+..|+.+.|...|+.-++
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7766 589999999999876666777766556667778999999988877665
No 160
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.00042 Score=71.01 Aligned_cols=121 Identities=12% Similarity=0.010 Sum_probs=101.1
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
.|+.-+..|||..|...|.+|+..-+ ++ -+.+...+.++...|+++.|..-|.++.++.|..|.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p--------~d------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~-- 169 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAP--------TD------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS-- 169 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCC--------CC------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--
Confidence 89999999999999999999997643 12 123344577888999999999999999999999885
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
++.|+|..++-.|+ ++.|..++..++.. .+.+ ..+..+|+.+...+|+++.|...
T Consensus 170 -----~~nNlgms~~L~gd---~~~A~~lll~a~l~---~~ad--------------~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 170 -----IANNLGMSLLLRGD---LEDAETLLLPAYLS---PAAD--------------SRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred -----hhhhHHHHHHHcCC---HHHHHHHHHHHHhC---CCCc--------------hHHHHHHHHHHhhcCChHHHHhh
Confidence 48899999999999 99999999999986 3212 12788999999999999999876
Q ss_pred HH
Q 004720 298 VR 299 (733)
Q Consensus 298 l~ 299 (733)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 54
No 161
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.63 E-value=0.00086 Score=63.25 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+++.|...++.|+|++|++.|+....-+|.++ -..+.+..++-+|.+.+++++|+..+++-++++| ++..-|..|
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45689999999999999999999999899874 3457899999999999999999999999999999 887776666
Q ss_pred HHHH
Q 004720 522 KIYL 525 (733)
Q Consensus 522 ki~l 525 (733)
.+.+
T Consensus 89 ~~gL 92 (142)
T PF13512_consen 89 MRGL 92 (142)
T ss_pred HHHH
Confidence 6655
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.61 E-value=0.0013 Score=60.78 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC----ChHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP----NIASA 517 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp----~~~t~ 517 (733)
+.++.|..+-..|+.++|+.+|+.++..-..+ ......+..++.+|..+|++++|...++++....| +....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~----~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG----ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 45678999999999999999999999854444 36678899999999999999999999999988756 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 004720 518 FLKFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~ 539 (733)
.....+....|+.++|++.+-.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 4556677788999999987744
No 163
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.60 E-value=0.29 Score=57.98 Aligned_cols=320 Identities=18% Similarity=0.156 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHH
Q 004720 198 LAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKT 277 (733)
Q Consensus 198 ~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~ 277 (733)
.|+.|++-+.. .+..+. ..-+.+++.+|..++..-+. ++.|..++++++.+++++. ..+++..+
T Consensus 39 ~ai~CL~~~~~-~~~l~p--~~ea~~~l~la~iL~~eT~n--~~~Ae~~L~k~~~l~~~~~-----------~~d~k~~~ 102 (608)
T PF10345_consen 39 TAIKCLEAVLK-QFKLSP--RQEARVRLRLASILLEETEN--LDLAETYLEKAILLCERHR-----------LTDLKFRC 102 (608)
T ss_pred HHHHHHHHHhc-cCCCCH--HHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccc-----------hHHHHHHH
Confidence 46777777774 333332 34578899999998865443 9999999999999966521 25567778
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH---HHHHHHHHhcCChHHHHHHHHHhhhcc----CCchHHH
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP---VLAMKAWLGLGRYNEAELELRGMVEIK----GIPECIW 350 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~---~lk~~il~~~g~~deAi~~l~~~l~~~----~~~~~~~ 350 (733)
-..|+.+|.+.+... |++.++...+... ..+..++.+ |+++......+++..|+..++.+.... +....+.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~-~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSE-TYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 888899999998655 8877776665321 023345544 555555555689999999998766332 2223333
Q ss_pred HhHHHHHHHhch---hhhHHHHHHHHHhhhcc------CCchHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHHHHhhhH
Q 004720 351 VSAVEAYFQAAG---TAGAETAKGVFLGLLGR------CHVSAKAAVRMAHRVAG-DEGDGVSEAAVKLRAKAVAELVSD 420 (733)
Q Consensus 351 ls~~~ly~~~~~---~~a~~~lk~~l~~ll~~------~~~~~~~a~~~l~~~l~-~~~sp~~~~~l~~ka~~l~~l~~~ 420 (733)
.++.+....... +.+.+.++.+.....+. ..|+-.....+++-+.. ..+++.. ...+...++.....
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~---~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKN---SKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHH
Confidence 333333322222 34455555442211111 11222222222222210 0222211 11222222221111
Q ss_pred HHHHH---------Hhh-----cc------hh---HHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCC-----
Q 004720 421 ERVLA---------LFV-----GD------AA---AKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLP----- 471 (733)
Q Consensus 421 e~v~~---------~~~-----g~------~~---~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~----- 471 (733)
..-.. .|. +. .. ..+...+-.+.+- .|......++.+.|.+++.+++....
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 10000 000 00 00 0022223333333 67777777888899999999884221
Q ss_pred --CCchh------------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---C-------ChHHHHHHHHHHHhc
Q 004720 472 --FDVEN------------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE---P-------NIASAFLKFKIYLQK 527 (733)
Q Consensus 472 --~~~~~------------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld---p-------~~~t~~~~~ki~l~~ 527 (733)
..... +.-...+....+.|.+-++++.+|.....++.... | .+...|+.+-.+...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 11000 01133345667788888899999999999876542 1 256677777777789
Q ss_pred CCHHHHHHHHH
Q 004720 528 NDQEGAINQIL 538 (733)
Q Consensus 528 gd~e~Al~~l~ 538 (733)
|+.+.|...|.
T Consensus 418 g~l~~A~~~y~ 428 (608)
T PF10345_consen 418 GDLEAALYQYQ 428 (608)
T ss_pred CCHHHHHHHHh
Confidence 99999999997
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0022 Score=62.86 Aligned_cols=101 Identities=16% Similarity=-0.006 Sum_probs=77.0
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN----IASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~----~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
|+..++.+.|.+. ++..+..++++|.+|...|++++|.++++++++.+|+ ....+.+..++...|++++|++.+
T Consensus 18 ~~~~~~~~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 18 MADLILKILPINK--KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred HHHHHHHHccccc--HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555443 2578889999999999999999999999999988762 356778999999999999999999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHcCCH
Q 004720 538 LAMTICLDFTTDFLSLAAHEAVACQAL 564 (733)
Q Consensus 538 ~~~~~~~~~~~~lL~la~~~a~~~~~~ 564 (733)
++.....+..+..+..-+......|..
T Consensus 96 ~~al~~~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 96 HQALELNPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence 999988766666444434444444443
No 165
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.54 E-value=0.00026 Score=57.74 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=56.2
Q ss_pred HhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHH
Q 004720 492 LGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAA 555 (733)
Q Consensus 492 l~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~ 555 (733)
++.|++++|++.|++++..+| +....+.++.++++.|++++|.+.++++....+.+|.+..+-+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 578999999999999999999 9999999999999999999999999999988776677555543
No 166
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.52 E-value=0.23 Score=56.88 Aligned_cols=370 Identities=14% Similarity=0.142 Sum_probs=206.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004720 145 LKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQY 224 (733)
Q Consensus 145 ~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~ 224 (733)
.|++.+-+..|+.|+.-+..... . +. .=++-+.-|..|+..|+.+.|...++||...... ....|+.++
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka-~-Gs------~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~---~v~dLa~vw 428 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKA-V-GS------PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK---TVEDLAEVW 428 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccC-C-CC------hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc---chHHHHHHH
Confidence 45566666777777765432110 0 00 1145566699999999999999999999977443 356799999
Q ss_pred HHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHH------HHHHHHHHHHhccCcHHHHHHHH
Q 004720 225 LTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKF------KTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 225 ~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~------~~l~~La~~yl~~~~~ekAl~~l 298 (733)
.+-|.--+.+.+ ++.|.+.+++|.-+ +.... ...+.+..+.+. ++|...+..--..|-++.....|
T Consensus 429 ~~waemElrh~~---~~~Al~lm~~A~~v---P~~~~--~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 429 CAWAEMELRHEN---FEAALKLMRRATHV---PTNPE--LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHhhhcC---CCchh--hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999988888888 99999999999886 32211 011111122232 25554455445567888888888
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc--cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI--KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGL 376 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~--~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~l 376 (733)
+.+... .-..|.....-+-.+....-++++.+.+.+.|.. .|+.-++|...+.-+.+.=...-++..+.+|-..
T Consensus 501 driidL----riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 501 DRIIDL----RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHH----hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 887763 1235655544444444445578999999887733 3455666654332222211122344444444444
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCC
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWN-CASILFRSKD 455 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~ 455 (733)
|.-|.|.+...+=++--.+ .... +.+. ..+..++++. .+....-..-+|| .-.+..+.=-
T Consensus 577 L~~Cpp~~aKtiyLlYA~l----EEe~-----GLar--~amsiyerat--------~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKL----EEEH-----GLAR--HAMSIYERAT--------SAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCHHHHHHHHHHHHHH----HHHh-----hHHH--HHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHHHHhC
Confidence 4444433111110000000 0000 0000 1111122111 1101111112333 2233333334
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCChHHHHH-HHHHH-HhcCCHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-EPNIASAFL-KFKIY-LQKNDQEG 532 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-dp~~~t~~~-~~ki~-l~~gd~e~ 532 (733)
.....+.|++|++..|.... + ....+.+.--.++|+.|+|..+|.-+.++ ||...+-|- .++.. ++-|| ++
T Consensus 638 v~~TR~iYekaIe~Lp~~~~----r-~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn-ed 711 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKA----R-EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN-ED 711 (835)
T ss_pred CcccHHHHHHHHHhCChHHH----H-HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC-HH
Confidence 55667889999988775421 1 22345566677899999999999987665 666666553 44444 35677 56
Q ss_pred HHHHHHHHHhccC--CChHHHHHHHHHHHHcC
Q 004720 533 AINQILAMTICLD--FTTDFLSLAAHEAVACQ 562 (733)
Q Consensus 533 Al~~l~~~~~~~~--~~~~lL~la~~~a~~~~ 562 (733)
-++.+-+|.++.. .+.+...++.+...-++
T Consensus 712 T~keMLRikRsvqa~yn~~~~~~a~q~~~~~~ 743 (835)
T KOG2047|consen 712 TYKEMLRIKRSVQATYNTDVNSMAHQMLKINF 743 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhh
Confidence 6666667776653 45677777766665544
No 167
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.49 E-value=0.00034 Score=77.38 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
..|.|..+++.|+|++|+.+|+.++++.|.+. .-.-.++|+|.||.++|++++|++++.+|+++.
T Consensus 78 ~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a----eA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 78 AVNLGLSLFSKGRVKDALAQFETALELNPNPD----EAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34699999999999999999999999998653 222569999999999999999999999999973
No 168
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00026 Score=71.39 Aligned_cols=105 Identities=19% Similarity=0.132 Sum_probs=89.8
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.++.....||.|+.-..|+.|+.||.+|+-..|. ...|+-+||.+++...+++.+..+..||+++.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~--------------~~~Y~tnralchlk~~~~~~v~~dcrralql~ 74 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT--------------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD 74 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCC--------------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence 4567788999999999999999999999977541 02466677999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
|... ...|-+|...+..+. |++|+..|++|+++....+.
T Consensus 75 ~N~v-------k~h~flg~~~l~s~~---~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 75 PNLV-------KAHYFLGQWLLQSKG---YDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred hHHH-------HHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHhcCCC
Confidence 8744 457888999999999 99999999999999777543
No 169
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.056 Score=56.52 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhH------HHHhcCCCCCHHHHHHHHHHHHHHHh
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAK------SALSKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~------~~~~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
.|+.-+-+|....+|..|-.||++.-.+.|...+...+-|..+|+-|. .....+|.+..-.-+--++.|+..-+
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 444456778888899999999999999888766665566666665443 12222331111111222444444422
Q ss_pred cCCCCcccchhhhhhh-hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHH
Q 004720 256 KGLGEARTREETTELK-GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAEL 334 (733)
Q Consensus 256 ~~~~~~~~~~~~~~~~-el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~ 334 (733)
.+..+.++ -..... +..+.++.+.|....+.|+|+.|+.-++.+.+. +...|...|.-.-++++.|+++.|++
T Consensus 126 ~Dl~g~rs--LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 126 GDLPGSRS--LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred ccCcchHH--HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh----cCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 22211110 000111 234567888899999999999999888888876 56788888999999999999999999
Q ss_pred HHHHhh
Q 004720 335 ELRGMV 340 (733)
Q Consensus 335 ~l~~~l 340 (733)
.+..++
T Consensus 200 ~iSEIi 205 (459)
T KOG4340|consen 200 HISEII 205 (459)
T ss_pred HHHHHH
Confidence 876555
No 170
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.44 E-value=0.00026 Score=74.41 Aligned_cols=110 Identities=20% Similarity=0.116 Sum_probs=87.0
Q ss_pred CCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHH
Q 004720 120 DVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLA 199 (733)
Q Consensus 120 ~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A 199 (733)
+++++-+.++...+.-.+.||.|++.|+|+.|+.||++++...+- + --+..+||-+|+++..|..|
T Consensus 85 ~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~---N-----------pV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 85 PVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH---N-----------PVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred CccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC---C-----------ccchhhHHHHHHHHHHHHHH
Confidence 334445666777777888999999999999999999999987651 0 12455779999999999999
Q ss_pred HHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 200 ITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 200 ~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
..++..|+.++....+. |-..|..-...|. ..+|.+.++.++++
T Consensus 151 E~DC~~AiaLd~~Y~KA-------YSRR~~AR~~Lg~---~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 151 EEDCEAAIALDKLYVKA-------YSRRMQARESLGN---NMEAKKDCETVLAL 194 (536)
T ss_pred HHhHHHHHHhhHHHHHH-------HHHHHHHHHHHhh---HHHHHHhHHHHHhh
Confidence 99999999998764443 5555666666677 88888889999998
No 171
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.43 E-value=0.0012 Score=75.68 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=123.6
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH-----HHHHHHccCHHHHHHHHHHHHhh
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIAR-----SRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~r-----A~~a~~~g~~~~A~~~~~rA~~l 209 (733)
.-.+.+.|.-+|++-.=-.|||||.++-.. -..| +....+.++|.+|..+++++..+
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~------------------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~ 514 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------------------ISARAQRSLALLILSNKDFSEADKHLERSLEI 514 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhh------------------hhHHHHHhhccccccchhHHHHHHHHHHHhhc
Confidence 444667777777777777788888776431 1112 22344689999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
.|-.+. .+|..|-+.++.++ +..|++.|.+...+ +|.+ +..|.+|+.+|+..+
T Consensus 515 nplq~~-------~wf~~G~~ALqlek---~q~av~aF~rcvtL---~Pd~--------------~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 515 NPLQLG-------TWFGLGCAALQLEK---EQAAVKAFHRCVTL---EPDN--------------AEAWNNLSTAYIRLK 567 (777)
T ss_pred Cccchh-------HHHhccHHHHHHhh---hHHHHHHHHHHhhc---CCCc--------------hhhhhhhhHHHHHHh
Confidence 887553 59999999999999 99999999999888 5533 338999999999999
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+-.+|..++..+++. +-.|+..+-.-+-+....|.+++|+..+.+++.
T Consensus 568 ~k~ra~~~l~EAlKc----n~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKC----NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhHHHHHHHHHHhhc----CCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999999986 345666666677777888999999999987763
No 172
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.40 E-value=0.022 Score=68.87 Aligned_cols=219 Identities=15% Similarity=0.072 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC------ch
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI------PE 347 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~------~~ 347 (733)
....+..|+..|...+++++|+..++...+. .+..+..+|+.+-++.+.++++++... .++...+. .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE----HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 4568889999999999999999999988775 467788888888899999998877666 33322111 12
Q ss_pred HHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004720 348 CIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF 427 (733)
Q Consensus 348 ~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~ 427 (733)
.+|-.++. |.++. .|+..+-.++. .......+..+.++++ +.+|++..++-.-|-.+.+. .-++.+.
T Consensus 104 ~~~~~i~~-~~~~k--~Al~~LA~~Yd-----k~g~~~ka~~~yer~L--~~D~~n~~aLNn~AY~~ae~-dL~KA~~-- 170 (906)
T PRK14720 104 HICDKILL-YGENK--LALRTLAEAYA-----KLNENKKLKGVWERLV--KADRDNPEIVKKLATSYEEE-DKEKAIT-- 170 (906)
T ss_pred HHHHHHHh-hhhhh--HHHHHHHHHHH-----HcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHh-hHHHHHH--
Confidence 22222222 11111 11111111100 1112456777777887 67787776661111111121 1111111
Q ss_pred hcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh-hhhhHHHHHHHH------------HHHHhC
Q 004720 428 VGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN-RILRAKSFRVLC------------LCYLGL 494 (733)
Q Consensus 428 ~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~-~~~~akl~r~la------------~cyl~l 494 (733)
++-+-...++..++|..+.++..+-.+..|.+.+. -.-..++...++ .||-+.
T Consensus 171 --------------m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 171 --------------YLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred --------------HHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 12123355778889999999888877776654321 001123333444 899999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
++|++++++++.++.++| |..+.+-+...|.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999 8877776666555
No 173
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.53 Score=55.37 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=113.3
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHH--HHHHhhccCCC-hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEI--VSKLDISRISD-SDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG- 212 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~--~~~~~~~~~~~-~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~- 212 (733)
..++.|.+..+++-|--|+-..-.. ..++.....++ +.+..+ |..+...|-.++|..+|.|++..+.-
T Consensus 762 nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakv--------AvLAieLgMlEeA~~lYr~ckR~DLlN 833 (1416)
T KOG3617|consen 762 NMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKV--------AVLAIELGMLEEALILYRQCKRYDLLN 833 (1416)
T ss_pred HHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4678889999999998888654322 22222112222 333333 45566777777777777777754410
Q ss_pred ----------------CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHH----HH---HHhcCCCCcccchhhhh
Q 004720 213 ----------------LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEA----LE---LCEKGLGEARTREETTE 269 (733)
Q Consensus 213 ----------------~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~A----le---l~~~~~~~~~~~~~~~~ 269 (733)
..+....|-..||+.++.+-.++| .+.|+.+|+++ ++ ++.+.|... +.+.
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D---i~~AleyyEK~~~hafev~rmL~e~p~~~---e~Yv- 906 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD---IEAALEYYEKAGVHAFEVFRMLKEYPKQI---EQYV- 906 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc---HHHHHHHHHhcCChHHHHHHHHHhChHHH---HHHH-
Confidence 111222355679999998888999 88899888875 22 233332211 1110
Q ss_pred hhhcHH-HHHHHHHHHHh-ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCch
Q 004720 270 LKGLKF-KTLRFISAIHL-QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPE 347 (733)
Q Consensus 270 ~~el~~-~~l~~La~~yl-~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~ 347 (733)
...+. +.|+--| .|+ ..|+.|.|+.+|..++. +|-..+|....|+.++|-...+.. ...
T Consensus 907 -~~~~d~~L~~WWg-qYlES~GemdaAl~~Y~~A~D------------~fs~VrI~C~qGk~~kAa~iA~es-----gd~ 967 (1416)
T KOG3617|consen 907 -RRKRDESLYSWWG-QYLESVGEMDAALSFYSSAKD------------YFSMVRIKCIQGKTDKAARIAEES-----GDK 967 (1416)
T ss_pred -HhccchHHHHHHH-HHHhcccchHHHHHHHHHhhh------------hhhheeeEeeccCchHHHHHHHhc-----ccH
Confidence 00111 1222223 454 45899999999998864 244567777788888877665421 223
Q ss_pred HHHHhHHHHHHHhch-hhhHHHHH
Q 004720 348 CIWVSAVEAYFQAAG-TAGAETAK 370 (733)
Q Consensus 348 ~~~ls~~~ly~~~~~-~~a~~~lk 370 (733)
..|.-++..|...+. -+|..++.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334455566654443 34444443
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0016 Score=68.24 Aligned_cols=97 Identities=13% Similarity=0.032 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
-.|.++...|+++.|..-|..|..+.|.+.+ .+.-+.-+..|..-+ .-.+|.+.+++|+++|| |+.+.++++.
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~-----~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNALRLAGDNPE-----ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3899999999999999999999999987642 233444445555543 46788999999999999 9999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC
Q 004720 523 IYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
.+.++|++.+|+..++.|.++.+.
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999988753
No 175
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.35 E-value=0.057 Score=66.32 Aligned_cols=238 Identities=18% Similarity=0.141 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHH
Q 004720 198 LAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKT 277 (733)
Q Consensus 198 ~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~ 277 (733)
+..++++|-..-.|.+. ....+.---++..++ .+.|.+..++|+..+.= +++ . =+..+
T Consensus 1442 esaeDferlvrssPNSS-------i~WI~YMaf~LelsE---iekAR~iaerAL~tIN~-------REe----e-EKLNi 1499 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSS-------ILWIRYMAFHLELSE---IEKARKIAERALKTINF-------REE----E-EKLNI 1499 (1710)
T ss_pred cCHHHHHHHHhcCCCcc-------hHHHHHHHHHhhhhh---hHHHHHHHHHHhhhCCc-------chh----H-HHHHH
Confidence 34456666665555432 234455566778888 99999999999986321 111 1 13335
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH-HHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 278 LRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA-MKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 278 l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk-~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
|..+-+.-..-|.-+...+.++++.++ -+|...|++ .++|.+.+.+++|.+.++.|+..-.....+|+..+.+
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqy------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQY------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 553333333345566777889999885 356666665 4799999999999999999998777788888888887
Q ss_pred HHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHh
Q 004720 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKER 436 (733)
Q Consensus 357 y~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~ 436 (733)
++.++. ..++..++.+.+ +.-|.. +....+.
T Consensus 1574 Ll~~ne---------------------~~aa~~lL~rAL--~~lPk~-----eHv~~Is--------------------- 1604 (1710)
T KOG1070|consen 1574 LLRQNE---------------------AEAARELLKRAL--KSLPKQ-----EHVEFIS--------------------- 1604 (1710)
T ss_pred HhcccH---------------------HHHHHHHHHHHH--hhcchh-----hhHHHHH---------------------
Confidence 765543 244455555665 344411 0111111
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCh--
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNI-- 514 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~-- 514 (733)
+-+..-|+.|+-+.+.-.|+--|.-+|.- ..+.....-.-++.|+.+.++..|+++..+.-.+
T Consensus 1605 --------kfAqLEFk~GDaeRGRtlfEgll~ayPKR-------tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1605 --------KFAQLEFKYGDAERGRTLFEGLLSAYPKR-------TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred --------HHHHHHhhcCCchhhHHHHHHHHhhCccc-------hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 24556789999999999999988877743 3466777777788999999999999987775433
Q ss_pred -HHHHHHHHHHHhc
Q 004720 515 -ASAFLKFKIYLQK 527 (733)
Q Consensus 515 -~t~~~~~ki~l~~ 527 (733)
.-.|-+|--|-.+
T Consensus 1670 mKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKS 1683 (1710)
T ss_pred hHHHHHHHHHHHHh
Confidence 3344444444443
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.31 E-value=0.67 Score=55.15 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=94.8
Q ss_pred HHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTEL 270 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~ 270 (733)
+..++|.+|+..+++...-.|..+-. ....|..++..|+ +++|..+++.-... +.+ +
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a-------~vLkaLsl~r~gk---~~ea~~~Le~~~~~----~~~----D----- 76 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYA-------KVLKALSLFRLGK---GDEALKLLEALYGL----KGT----D----- 76 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHH-------HHHHHHHHHHhcC---chhHHHHHhhhccC----CCC----c-----
Confidence 36789999999999988777764421 2234667778888 88888655543332 111 0
Q ss_pred hhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc--HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchH
Q 004720 271 KGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS--LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPEC 348 (733)
Q Consensus 271 ~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~--~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~ 348 (733)
..++..|-.||-+.|++|+|..+|+.+.+ ..|+ ..+-.+.++.+-++|.+-.+...++-.+.|....
T Consensus 77 ----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~-------~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 77 ----DLTLQFLQNVYRDLGKLDEAVHLYERANQ-------KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred ----hHHHHHHHHHHHHHhhhhHHHHHHHHHHh-------hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 12788889999999999999999999987 3455 2244455677778887777666666666665544
Q ss_pred HHHhHHHHHHHhch
Q 004720 349 IWVSAVEAYFQAAG 362 (733)
Q Consensus 349 ~~ls~~~ly~~~~~ 362 (733)
.+-+...+++....
T Consensus 146 yfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 146 YFWSVISLILQSIF 159 (932)
T ss_pred hHHHHHHHHHHhcc
Confidence 44477777776544
No 177
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.27 E-value=0.012 Score=65.30 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
.|.++++.+++++|++.+++++..+|.. .-+..+++..|++.|++++|+.++++...-+| ++....++++.|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay 418 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS-------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY 418 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHH
Confidence 7888899999999999999999887743 34678889999999999999999999988899 888899999999
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 004720 525 LQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~ 543 (733)
...||..+|...+.....+
T Consensus 419 ~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 419 AELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHhCchHHHHHHHHHHHHh
Confidence 9999988888777554444
No 178
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.098 Score=61.10 Aligned_cols=227 Identities=13% Similarity=0.169 Sum_probs=141.5
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHh
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI-ASAFLKFKIYLQ 526 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~-~t~~~~~ki~l~ 526 (733)
...+-|-.++|...|++.-.++- +-.-|...|.+++|.++.+ ..|. +. .|+|..++-.-.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DL---------------lNKlyQs~g~w~eA~eiAE---~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDL---------------LNKLYQSQGMWSEAFEIAE---TKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHhcccHHHHHHHHh---hccceehhhhHHHHHHHHHh
Confidence 34566778888889888765422 2234667889998877764 4455 54 455556666667
Q ss_pred cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCCh
Q 004720 527 KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNE 606 (733)
Q Consensus 527 ~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~ 606 (733)
.+|.+.|+++|++...-. + ++. +...+ +. .+++.-.+.. .| + +++|.--+++ ...|+.
T Consensus 871 r~Di~~AleyyEK~~~ha-f--ev~----rmL~e--~p----~~~e~Yv~~~-~d---~----~L~~WWgqYl-ES~Gem 928 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHA-F--EVF----RMLKE--YP----KQIEQYVRRK-RD---E----SLYSWWGQYL-ESVGEM 928 (1416)
T ss_pred hccHHHHHHHHHhcCChH-H--HHH----HHHHh--Ch----HHHHHHHHhc-cc---h----HHHHHHHHHH-hcccch
Confidence 899999999997653221 1 111 11111 11 2333333422 22 2 6666665554 335788
Q ss_pred hHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHH------hhhhhhhhhcccccchhhHHHHHHHHHHHHcc---cc
Q 004720 607 SEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLA------VMSWNFGTNCGKEKKYELCMEFLRLASEFYGI---RV 677 (733)
Q Consensus 607 ~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~------~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l---~p 677 (733)
|..+.+|..|....+.....|+.|+- +++.=++ ..+|-+|-++.+.++...+..||.-|.-|... |-
T Consensus 929 daAl~~Y~~A~D~fs~VrI~C~qGk~----~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 929 DAALSFYSSAKDYFSMVRIKCIQGKT----DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred HHHHHHHHHhhhhhhheeeEeeccCc----hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988877666888753 2333232 24789999999999999999999998887664 44
Q ss_pred CCchhhhHHHHHHHHHHH-----HHHHHHHHhhhccccchHHHHHHHHHHHhhccc
Q 004720 678 DGQVEENSITVCKSLILT-----VSAMIASENQKQIALMNNEVKQALELLDRAGKV 728 (733)
Q Consensus 678 ~~~~~~~~~~~c~~ll~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (733)
.+....-.-..| +|+ |+||.--|.+ --+.++||++|-|||-+
T Consensus 1005 End~~d~L~nla---l~s~~~d~v~aArYyEe~------g~~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 1005 ENDMKDRLANLA---LMSGGSDLVSAARYYEEL------GGYAHKAVMLYHKAGMI 1051 (1416)
T ss_pred hcCHHHHHHHHH---hhcCchhHHHHHHHHHHc------chhhhHHHHHHHhhcch
Confidence 444433344444 332 1222222222 12589999999999964
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.0037 Score=64.82 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch---HHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI---ASAF 518 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~---~t~~ 518 (733)
+++.+..+++.|+|..|.+-|..-+.-||.+. ..+..++=|+.|+...|+|+.|..+|..+.+--| ++ .+.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 67899999999999999999999999999873 5667899999999999999999999999988877 54 5566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
-+..+....|+.|+|...|..+.+--+.++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 667777789999999999998886655444
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.20 E-value=0.0042 Score=71.67 Aligned_cols=138 Identities=12% Similarity=-0.059 Sum_probs=94.9
Q ss_pred HHHHHHHHccC---HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHh--cCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 185 ARSRTAWEVLE---QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALS--KNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 185 ~rA~~a~~~g~---~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~--~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
.|+..++..++ +..|+.++++|++++|+++..+..++.++..... +.. .++ ...+....++++.+ ...
T Consensus 344 lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~-~~~~~~~~---l~~a~~~~~~a~al---~~~ 416 (517)
T PRK10153 344 YQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS-QQPLDEKQ---LAALSTELDNIVAL---PEL 416 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-cCCccHHH---HHHHHHHHHHhhhc---ccC
Confidence 56666665544 7799999999999999988777766665543211 110 111 34444445554443 111
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
.. ...++..++..+...|++++|...++.+... ++ ...++++.++++...|++++|+..+.+.
T Consensus 417 ~~------------~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L----~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 417 NV------------LPRIYEILAVQALVKGKTDEAYQAINKAIDL----EM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cC------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 10 1236777788888889999999999999985 23 3456699999999999999999999988
Q ss_pred h-hccCCc
Q 004720 340 V-EIKGIP 346 (733)
Q Consensus 340 l-~~~~~~ 346 (733)
+ .++..+
T Consensus 480 ~~L~P~~p 487 (517)
T PRK10153 480 FNLRPGEN 487 (517)
T ss_pred HhcCCCCc
Confidence 8 444444
No 181
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.19 E-value=0.008 Score=66.57 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
+..+...|..|++++|...+..-+.-.|.| .-..-..+..+++.|+.++|.+.+++++.++| ++.-.+....
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDN-------PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 347788899999999999999976766655 34556778899999999999999999999999 7899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.+++.|+.++|+..++......+.+|+.-.+-++..-+.|+...+..|.-.-..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999998888998888878888888998888766644333
No 182
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0086 Score=61.25 Aligned_cols=157 Identities=13% Similarity=0.034 Sum_probs=105.9
Q ss_pred HHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHH
Q 004720 141 VWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSL 220 (733)
Q Consensus 141 ~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~L 220 (733)
+.++.|+.+.|-.|+...-+-.|.- .++....|-..=..|++++|+++|++.++-+|.+.-.+++.
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S--------------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGS--------------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCC--------------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 4567889999999997665444320 12222223334478999999999999999888755433333
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
..+.- .+|+ --+|++-+..=++.+-.+ . ..|+.|+..|+..++|++|..|++.
T Consensus 127 lAilk-------a~GK---~l~aIk~ln~YL~~F~~D---~--------------EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 127 LAILK-------AQGK---NLEAIKELNEYLDKFMND---Q--------------EAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHHHH-------HcCC---cHHHHHHHHHHHHHhcCc---H--------------HHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 33333 4566 567777666666653332 1 2899999999999999999999998
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhcC---ChHHHHHHHHHhhhc
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGLG---RYNEAELELRGMVEI 342 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~g---~~deAi~~l~~~l~~ 342 (733)
+.=+ .|..|-..--.+++++..| ++.-+.+++.+.+..
T Consensus 180 ~ll~----~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLI----QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8775 3455554444556666665 456788888777743
No 183
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.06 E-value=0.0011 Score=46.31 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN 513 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~ 513 (733)
|+++.++|.||..+|++++|+++|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 578999999999999999999999999999993
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.05 E-value=0.015 Score=61.36 Aligned_cols=101 Identities=12% Similarity=0.006 Sum_probs=84.0
Q ss_pred HHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---ChHHHH
Q 004720 481 AKSFRVLCLCY-LGLSLIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKNDQEGAINQILAMTICLDF---TTDFLS 552 (733)
Q Consensus 481 akl~r~la~cy-l~l~~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~---~~~lL~ 552 (733)
.+..+..+..+ ++.|+|++|++.|++.++..| + +..+|.+..+|...|++++|+..++++.+..+. .++.+.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35567777775 667999999999999999999 5 468899999999999999999999999976554 456666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 553 LAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 553 la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
..+....+.|+.+.|...++.+++.++.+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 55566778899999999999999977654
No 185
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.16 Score=52.64 Aligned_cols=124 Identities=11% Similarity=0.055 Sum_probs=93.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH--H
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF--K 522 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~--k 522 (733)
.|.++.+.|+|++|.+.......+. +.---..|++++..+|-|+..++++.++|. .+.+++--. +
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE------------~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~ 181 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLE------------AAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVK 181 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 6788899999999999887743221 122235789999999999999999999998 788887644 4
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
++.-.+..+.|.-.|+.|..-.+-+|.++.=-+.-++..++.+.|...|+..|++...+
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 44445567889988988876333366655544566677889999999999888866555
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.03 E-value=0.0023 Score=70.86 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=62.6
Q ss_pred hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 477 RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI---ASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 477 ~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~---~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
.++.+..+.|++..|.++|+|++|+..|++|++++| +. .++|++.-+|...|+.++|++++++...+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 378899999999999999999999999999999999 55 45899999999999999999999999886
No 187
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.02 E-value=0.32 Score=55.73 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-hHHHH
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N-IASAF 518 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~-~~t~~ 518 (733)
..+|..|..+...|+.++|+++|+.++.-.. .. ++-..-+++-++.||.-+++|++|.+++.+..+.+. + ....|
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~-~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQS--EW-KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hH-HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 4567799999999999999999999884222 11 244566799999999999999999999999988876 4 44556
Q ss_pred HHHHHHHhcCCH
Q 004720 519 LKFKIYLQKNDQ 530 (733)
Q Consensus 519 ~~~ki~l~~gd~ 530 (733)
..+-++...|+.
T Consensus 345 ~~a~c~~~l~~~ 356 (468)
T PF10300_consen 345 LAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhhccc
Confidence 677888888877
No 188
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.11 Score=53.75 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=66.5
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCC---C-CCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNE---T-NSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~---~-~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
-+.-.|+|+.++....+...-. +.+....++++.|..+|.....-.. + .+.-.|++.+...++. +...+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~----e~~~~~- 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLEL----ESNKKS- 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhC----cchhHH-
Confidence 4556788887777766665332 3333345556666655553222211 0 1133444444443332 111100
Q ss_pred hhhhhhhh------cH-HHHHHHH-HHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHH
Q 004720 265 EETTELKG------LK-FKTLRFI-SAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELEL 336 (733)
Q Consensus 265 ~~~~~~~e------l~-~~~l~~L-a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l 336 (733)
....+.+ .. -.+++.+ +.+|+.-++|+.|++.+..... ..+.-++..|+++..+.|-|++.+
T Consensus 91 -~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 91 -ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------LEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred -HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00 0133333 4456666777777776665322 234466777777777777777777
Q ss_pred HHhh
Q 004720 337 RGMV 340 (733)
Q Consensus 337 ~~~l 340 (733)
+.|.
T Consensus 161 k~mq 164 (299)
T KOG3081|consen 161 KKMQ 164 (299)
T ss_pred HHHH
Confidence 6665
No 189
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.96 E-value=0.24 Score=51.30 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=115.8
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..+|+-|...+..|+ +++|++.|+....- .|..+ ..-+++..++-++.+.++|+.|+..++.-
T Consensus 35 ~~LY~~g~~~L~~gn---~~~A~~~fe~l~~~---~p~s~-----------~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 35 SELYNEGLTELQKGN---YEEAIKYFEALDSR---HPFSP-----------YSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHc---CCCCc-----------ccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 469999999999999 99999999876643 44322 22347788899999999999999999887
Q ss_pred HccCCCCCCCCCcHH---HHHHHHHHhc-CChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 302 REGSFDGGDHHASLP---VLAMKAWLGL-GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~---~lk~~il~~~-g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
... .+.||.+- |+++.++... .+.+.--... ..|+..++.+ +
T Consensus 98 i~l----yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~--------------------------~~A~~~f~~~----i 143 (254)
T COG4105 98 IRL----YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAA--------------------------RAAFAAFKEL----V 143 (254)
T ss_pred HHh----CCCCCChhHHHHHHHHHHhccCCccccCHHHH--------------------------HHHHHHHHHH----H
Confidence 775 35677643 6666553332 1111000000 1122222211 2
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
.+..++ +.-+++. .|...++.. +.|++. .-|.-+.+.|.|-
T Consensus 144 ~ryPnS-----------------~Ya~dA~-~~i~~~~d~---------LA~~Em------------~IaryY~kr~~~~ 184 (254)
T COG4105 144 QRYPNS-----------------RYAPDAK-ARIVKLNDA---------LAGHEM------------AIARYYLKRGAYV 184 (254)
T ss_pred HHCCCC-----------------cchhhHH-HHHHHHHHH---------HHHHHH------------HHHHHHHHhcChH
Confidence 223322 1111111 111111111 111111 1578889999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYIT 505 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~ 505 (733)
-|+.-++..++-+|.-. -.-+.+..+...|..+|-.++|...-.
T Consensus 185 AA~nR~~~v~e~y~~t~----~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 185 AAINRFEEVLENYPDTS----AVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHHhcccccc----chHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99999999998776442 334567788889999998888876543
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.032 Score=58.71 Aligned_cols=113 Identities=19% Similarity=0.084 Sum_probs=93.1
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhc---CCHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQK---NDQEGAINQI 537 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~---gd~e~Al~~l 537 (733)
-.+..|.-+|.|. +-.-.||.+|+.+|+++.|...|.+|.+++| ++........+.... .+..+|.+.+
T Consensus 144 ~Le~~L~~nP~d~-------egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 144 RLETHLQQNPGDA-------EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHhCCCCc-------hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3344455556554 4568899999999999999999999999999 776666666655543 4568999999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 538 LAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 538 ~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+++.+....++.-+++-+..+++.|+...|+.+.+.|++..+.+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999988899888888899999999999999999999977665
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.93 E-value=0.013 Score=54.03 Aligned_cols=102 Identities=23% Similarity=0.199 Sum_probs=78.8
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
.+.|+.+..+-..|+ .++|+.+|+++++. +.. .+.+...+..++.+|-..|++++|+..++..
T Consensus 2 ~~~~~~A~a~d~~G~---~~~Ai~~Y~~Al~~---gL~-----------~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 2 RALYELAWAHDSLGR---EEEAIPLYRRALAA---GLS-----------GADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred chHHHHHHHHHhcCC---HHHHHHHHHHHHHc---CCC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 367899999999999 99999999999986 331 1124458889999999999999999999888
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
....++ .+.++....+..-++...|++++|+..+...+.
T Consensus 65 ~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 65 LEEFPD-DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 774210 011333446667799999999999999876653
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.91 E-value=0.017 Score=66.64 Aligned_cols=96 Identities=17% Similarity=0.054 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHH
Q 004720 455 DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 455 ~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al 534 (733)
+...+.+....++.... + +..+.++..++..+...|++++|..++++|+.++|+...+.++.+++...|+.++|+
T Consensus 399 ~l~~a~~~~~~a~al~~-~----~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 399 QLAALSTELDNIVALPE-L----NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred HHHHHHHHHHHhhhccc-C----cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555666554311 2 123468899999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHH
Q 004720 535 NQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+.|++...+.+..|+ ..+|=.
T Consensus 474 ~~~~~A~~L~P~~pt-~~~~~~ 494 (517)
T PRK10153 474 DAYSTAFNLRPGENT-LYWIEN 494 (517)
T ss_pred HHHHHHHhcCCCCch-HHHHHh
Confidence 999999999888786 555533
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=96.86 E-value=0.0079 Score=58.13 Aligned_cols=98 Identities=9% Similarity=-0.028 Sum_probs=83.3
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
-+..|..|-..+..|+ +++|.+.|+-..-+ ++.+. +.+..||.|+-..++|++|+.+|.+
T Consensus 37 le~iY~~Ay~~y~~Gk---~~eA~~~F~~L~~~---d~~n~--------------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~ 96 (165)
T PRK15331 37 MDGLYAHAYEFYNQGR---LDEAETFFRFLCIY---DFYNP--------------DYTMGLAAVCQLKKQFQKACDLYAV 96 (165)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CcCcH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999 99999999887776 55332 2688899999999999999999998
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
+-.. ...+|...|-.+.|++..|+.++|...+...+.+
T Consensus 97 A~~l----~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 97 AFTL----LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHc----ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 8775 4678888899999999999999999998877653
No 194
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.84 E-value=0.032 Score=61.99 Aligned_cols=115 Identities=19% Similarity=0.081 Sum_probs=84.5
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCC
Q 004720 451 FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND 529 (733)
Q Consensus 451 ~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd 529 (733)
-..++|+.|+++|+.-..-+|. ....++.+|+..++-.+|+..++++++..| +.......++.++.+++
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe----------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE----------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc----------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 4457788888888886665542 224477777788888888888888888888 66666667777888888
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004720 530 QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLL 575 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll 575 (733)
++.|++..++...+.+++.+.-..-+....+.|+.+.|..+|+.+=
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888877666544445677777888888887776443
No 195
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.84 E-value=0.013 Score=54.15 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=79.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHH----HHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASA----FLK 520 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~----~~~ 520 (733)
+|...-+.|+.+.|++.|.+++...| .++..|.|++.+|--.|+.++|.+.+++|+++.- ...|. .-+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P-------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAP-------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcc-------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 78888999999999999999999877 4567899999999999999999999999999954 33332 247
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
.-+|-..|+-|.|...++....+..
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCC
Confidence 8888899999999999988877643
No 196
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.84 E-value=0.012 Score=65.27 Aligned_cols=88 Identities=25% Similarity=0.198 Sum_probs=73.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
|.++...++-.+|+..+.+++...|.. +.++..-+..++.+++ ++.|+...++|.++ .|
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~~p~d-------~~LL~~Qa~fLl~k~~---~~lAL~iAk~av~l---sP-------- 265 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKENPQD-------SELLNLQAEFLLSKKK---YELALEIAKKAVEL---SP-------- 265 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHh---Cc--------
Confidence 677778899999999999999777765 3456667888889999 99999999999998 44
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
....+|..|+.+|...|+|+.|+-.++-+
T Consensus 266 ------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 266 ------SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 22459999999999999999999777644
No 197
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.83 E-value=0.0025 Score=44.34 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
|++++.+|.+|.++|++++|+++++++++++|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46889999999999999999999999999999
No 198
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.79 E-value=0.62 Score=53.99 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEA 558 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a 558 (733)
...+.|--.+.-|.++|+|+.|.+.|.++.... .....|.+.|.++.|.+.-+....-.+ ...+...-+++-
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~-------dai~my~k~~kw~da~kla~e~~~~e~-t~~~yiakaedl 834 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEADLFK-------DAIDMYGKAGKWEDAFKLAEECHGPEA-TISLYIAKAEDL 834 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhcchhH-------HHHHHHhccccHHHHHHHHHHhcCchh-HHHHHHHhHHhH
Confidence 445667778889999999999999998874421 124456778888888765543322111 112222234555
Q ss_pred HHcCCHHHHH
Q 004720 559 VACQALSVAV 568 (733)
Q Consensus 559 ~~~~~~~~a~ 568 (733)
.+.|....|.
T Consensus 835 dehgkf~eae 844 (1636)
T KOG3616|consen 835 DEHGKFAEAE 844 (1636)
T ss_pred Hhhcchhhhh
Confidence 5566666664
No 199
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.72 E-value=0.17 Score=52.35 Aligned_cols=201 Identities=16% Similarity=0.080 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 128 AIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 128 ~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
-...+...+..|..-++.||+..|+..|++...--+ .++-.+ ..++..+-++.+.|+++.|+.+.+|=.
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p------~s~~~~-----qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHP------FSPYSE-----QAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCcccH-----HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 355789999999999999999999999976553221 111112 234445668889999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHHhHHHHhcCCC-CC-HHHHHHHHHHHHHHHhcCCCCcccchhh----hhhhhcHHHHHHHH
Q 004720 208 CLLFGLFEHYKSLANQYLTFAKSALSKNET-NS-LNDALKLMNEALELCEKGLGEARTREET----TELKGLKFKTLRFI 281 (733)
Q Consensus 208 ~l~~~~~~~~~~La~~~~~~G~~~~~~~~~-~~-~e~A~~~l~~Alel~~~~~~~~~~~~~~----~~~~el~~~~l~~L 281 (733)
.+.|+.|+ ..-++|-.|.+++..-+. +- ..-+...+...-+++.+=| +.++.+.. .......+.-=..+
T Consensus 99 ~lyP~~~n----~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP-nS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 99 RLYPTHPN----ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP-NSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred HhCCCCCC----hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC-CCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 99998775 556888899987766331 00 2223333333333333322 22222210 00011112223345
Q ss_pred HHHHhccCcHHHHHHHHHHHHccCCCCCCCC-CcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 282 SAIHLQKGEYESVIKCVRVLREGSFDGGDHH-ASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 282 a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~-p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
++-|++.|.+.-|+.-++.+.+..+ ...+ ..++....+++...|-.++|.....-+-.|.+.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~--~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYP--DTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 7778889999888888777766321 1111 1244777788888898888877754333555444
No 200
>PRK11906 transcriptional regulator; Provisional
Probab=96.71 E-value=0.033 Score=62.04 Aligned_cols=164 Identities=14% Similarity=0.089 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHccC---HHHHHHHHHHHH---hhhhcCchhHHHHHHHHHHH---hHHHHhcCCCCCHHHHHHHHHHHH
Q 004720 181 DINIARSRTAWEVLE---QNLAITLLNRAK---CLLFGLFEHYKSLANQYLTF---AKSALSKNETNSLNDALKLMNEAL 251 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~---~~~A~~~~~rA~---~l~~~~~~~~~~La~~~~~~---G~~~~~~~~~~~~e~A~~~l~~Al 251 (733)
+-++.|+..-+..+. .+.|..++.||. +++|.....+..+|..++.. |..- ...+ ..+|...-++|.
T Consensus 256 ~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~---~~~a~~~A~rAv 331 (458)
T PRK11906 256 SDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELA---AQKALELLDYVS 331 (458)
T ss_pred hHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHH---HHHHHHHHHHHH
Confidence 334566666654444 448999999999 88888777777777766644 2211 2333 788888999999
Q ss_pred HHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHH
Q 004720 252 ELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNE 331 (733)
Q Consensus 252 el~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~de 331 (733)
++ ++.+. .++..+|.++.-.++++.|...++.+... ++..+.+++..+-++.-.|+.++
T Consensus 332 el---d~~Da--------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 332 DI---TTVDG--------------KILAIMGLITGLSGQAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred hc---CCCCH--------------HHHHHHHHHHHhhcchhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCCHHH
Confidence 98 65443 27778899888888899999999999986 57888888999999999999999
Q ss_pred HHHHHHHhhhccCCchH--HHHhHHHHHHHhchhhhHHHH
Q 004720 332 AELELRGMVEIKGIPEC--IWVSAVEAYFQAAGTAGAETA 369 (733)
Q Consensus 332 Ai~~l~~~l~~~~~~~~--~~ls~~~ly~~~~~~~a~~~l 369 (733)
|+..+.+.++..|.... +..-.+.+|..+.-+.++..+
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 99999998855543322 222234456655444444443
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.58 E-value=0.091 Score=48.70 Aligned_cols=109 Identities=16% Similarity=0.045 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 004720 125 PSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLN 204 (733)
Q Consensus 125 ~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~ 204 (733)
+...++....--..|....+.|+++.|++-|.+|+.++|. | -..|-+||-++--+|+-++|+.+++
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~----r----------aSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE----R----------ASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc----c----------hHhhccHHHHHHHcCChHHHHHHHH
Confidence 4555656555566789999999999999999999999873 1 1345567888889999999999999
Q ss_pred HHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 205 RAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 205 rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
||+++.-.. ....-..+.+.|..|-..|+ .+.|..-|+.|-++
T Consensus 102 ~AleLag~~---trtacqa~vQRg~lyRl~g~---dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 102 KALELAGDQ---TRTACQAFVQRGLLYRLLGN---DDAARADFEAAAQL 144 (175)
T ss_pred HHHHhcCcc---chHHHHHHHHHHHHHHHhCc---hHHHHHhHHHHHHh
Confidence 999986532 23334456788999999999 89999999999998
No 202
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.59 Score=47.64 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=74.1
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch------HHH
Q 004720 446 CASILFRS-KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI------ASA 517 (733)
Q Consensus 446 ~g~~~~k~-~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~------~t~ 517 (733)
.|..+... .+++.||..|+.+-+++..++.+ ..--|++.+-+...-.+++|.+|+.+|++..+..- +. .-+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 56677666 89999999999999988866543 56678899999999999999999999998655532 22 334
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 518 FL-KFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 518 ~~-~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
|+ ...+++-..|.-.+-..+++.....+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 44 35566666787777777777777654
No 203
>PRK11906 transcriptional regulator; Provisional
Probab=96.52 E-value=0.23 Score=55.53 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+|..|....-.++++.|+.||+.|+.+.| +.|..++..+....-.|+.++|.+.+++|++++| -.....+..
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-------n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHST-------DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCC-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 44577777777889999999999998866 5577888899999999999999999999999999 454444433
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 004720 522 KI--YLQKNDQEGAINQILA 539 (733)
Q Consensus 522 ki--~l~~gd~e~Al~~l~~ 539 (733)
-+ |. ..-.+.|+..|-+
T Consensus 414 ~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHc-CCchhhhHHHHhh
Confidence 33 32 3445667766643
No 204
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.1 Score=53.26 Aligned_cols=185 Identities=22% Similarity=0.182 Sum_probs=112.3
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
-..++++-+++++|-..++|+.|-.|+.||++..+. +|+-=...+ -+-..+-.+-....+.++..+++||..
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn---nrslfhAAK-----ayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN---NRSLFHAAK-----AYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---cccHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345678889999999999999999999999987762 111001111 111112233367888899999999998
Q ss_pred hhhc--CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 209 LLFG--LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 209 l~~~--~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
+... +|+ .|..-...+-..+...+ .++|+.+|++++.+++.+.... +-...+...+++|.
T Consensus 100 lY~E~Gspd----tAAmaleKAak~lenv~---Pd~AlqlYqralavve~~dr~~-----------ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 100 LYVECGSPD----TAAMALEKAAKALENVK---PDDALQLYQRALAVVEEDDRDQ-----------MAFELYGKCSRVLV 161 (308)
T ss_pred HHHHhCCcc----hHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHhccchHH-----------HHHHHHHHhhhHhh
Confidence 8654 443 22233333334456666 8999999999999977653211 22335666777888
Q ss_pred ccCcHHHHHHHHHHHHccCCCCCCCCCcH---HHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 287 QKGEYESVIKCVRVLREGSFDGGDHHASL---PVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~~~~~~~~p~~---~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
....|++|-..+...-.... .-+.-|+. ..-.+-+++...+|-.|.+.++..-
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~-~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAAD-KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHH-HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 88888877644432211100 01122232 1233344455568888888887543
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.072 Score=50.44 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=74.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCC-----ch-h---------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFD-----VE-N---------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~-----~~-~---------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.|......++.+.+++.+..++.++..+ .. . +.....+...++..+...|++++|...+.+++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 4556667888999999999988765311 00 1 1234456677888899999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
|| +-..+..+.+++...|+..+|++.|+++....
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 99 88888899999999999999999999987654
No 206
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.45 Score=48.81 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=71.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH----HhhCC-C-hHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA----EKLEP-N-IASAFL 519 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A----~~ldp-~-~~t~~~ 519 (733)
++....+..+-++|+++|+.++.+...+..+ ..--.+++..+..+++++.|++|-..+.+- .+++. + +-..+.
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~-~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v 194 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRD-QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV 194 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchH-HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence 5666778899999999999999876655433 356678999999999999999998888763 34443 2 211122
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 520 -KFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 520 -~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
.--+|+-.+|+..|-.|++.=.+.++|
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 344555667999999988776555554
No 207
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.025 Score=62.54 Aligned_cols=87 Identities=15% Similarity=0.029 Sum_probs=66.9
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHhhc-cCC---CC-------chhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 440 HAVLWN-CASILFRSKDYEASAEMFEKSML-YLP---FD-------VENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 440 ~~llW~-~g~~~~k~~~y~~A~~~y~~aL~-~~~---~~-------~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
..+.|| .|.++|..+.|..++.+|.+||. +.. .| .....-...+.+|.+..|+..|..-.|.+.+.+|
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 346777 99999999999999999999995 221 11 1111234578999999999999999999999999
Q ss_pred HhhCC-ChHHHHHHHHHHHh
Q 004720 508 EKLEP-NIASAFLKFKIYLQ 526 (733)
Q Consensus 508 ~~ldp-~~~t~~~~~ki~l~ 526 (733)
.+.=- +|...+.++..-+.
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 87744 77777777766553
No 208
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.25 E-value=3.8 Score=49.13 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=104.3
Q ss_pred HHHHHHhhhHHhccCCcchHHHH------HHHHHHHHHHHh---hccCCCh----------HHHHH-HHHHHHHHHHHHH
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGC------FEKATEIVSKLD---ISRISDS----------DERKL-LLDINIARSRTAW 191 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~------lekA~e~~~~~~---~~~~~~~----------~e~~~-~l~~l~~rA~~a~ 191 (733)
-.++..+..-|...|-+..|+.. ++.|.++++... +..+.-. .+.-. .-.+.+.+|....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~ 426 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLA 426 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHH
Confidence 45566666677777777766644 455555555311 1110000 00000 0135556788888
Q ss_pred HccCHHHHHHHHHHHHhhhhc--CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFG--LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTE 269 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~--~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~ 269 (733)
.+.++.+|..+++++....+. .+.....++..---.|.....+++ .+.|.+..+.+++.+.++.
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~---~e~a~~lar~al~~L~~~~----------- 492 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD---PEEAEDLARLALVQLPEAA----------- 492 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhccccc-----------
Confidence 999999999999999876554 222233444445556888999999 9999999999999854432
Q ss_pred hhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 270 LKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 270 ~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
.-.+..++..++.+..-.|+|++|+.++..+++.
T Consensus 493 -~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 493 -YRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred -chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 1134568889999999999999999998877764
No 209
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.24 E-value=0.66 Score=46.80 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=73.6
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
.=|.+++..|+-+-+.|= -.-|.-.|.+++.+ .|. ...++..||.-+...|+||.|.+.+
T Consensus 63 eRA~l~fERGvlYDSlGL---~~LAR~DftQaLai---~P~--------------m~~vfNyLG~Yl~~a~~fdaa~eaF 122 (297)
T COG4785 63 ERAQLLFERGVLYDSLGL---RALARNDFSQALAI---RPD--------------MPEVFNYLGIYLTQAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHHHhcchhhhhhH---HHHHhhhhhhhhhc---CCC--------------cHHHHHHHHHHHHhcccchHHHHHh
Confidence 345566777777777776 77777778888898 432 2348889998889999999999999
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+...+. .+..-.+...++-.++..|+|.=|.+++...-.
T Consensus 123 ds~~EL----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 123 DSVLEL----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred hhHhcc----CCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 988774 222223446777788888999999999876653
No 210
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.09 E-value=0.046 Score=58.53 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=110.6
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
...-.|++++..+.|+.+.+.|++|+.+-.. - +|.-.-+.+.+.-...+-...|+++|..+..+|.++....
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~----~----~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHN----N----DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc----c----CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 3444899999999999999999999886431 0 0111113455556677778899999999999999986542
Q ss_pred c---hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 214 F---EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 214 ~---~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
. -..++=+..+|.+++.+-.+|. ..+|-.+.++|.++--. .+ ++.+.+++++.+|.+|-..|+
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~---LgdA~e~C~Ea~klal~-~G----------dra~~arc~~~~aDIyR~~gd 261 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGR---LGDAMECCEEAMKLALQ-HG----------DRALQARCLLCFADIYRSRGD 261 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHH-hC----------ChHHHHHHHHHHHHHHHhccc
Confidence 2 1235566778999999999999 99999999999887222 11 155678899999999999999
Q ss_pred HHHHHHHHHHHHc
Q 004720 291 YESVIKCVRVLRE 303 (733)
Q Consensus 291 ~ekAl~~l~~a~~ 303 (733)
.|.|..-|+.+-.
T Consensus 262 ~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 262 LERAFRRYEQAMG 274 (518)
T ss_pred HhHHHHHHHHHHH
Confidence 9998877776643
No 211
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.04 E-value=0.0034 Score=66.58 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=84.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
++..++..|++++|++.|..++...| ..+.+|-+++.+|++|++...|+..|..|+.++| +...+-.+-...
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp-------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~ 192 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNP-------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE 192 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCC-------chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence 67778999999999999999998865 5577899999999999999999999999999999 677777888888
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
..+|++++|..++....++ |.+++
T Consensus 193 rllg~~e~aa~dl~~a~kl-d~dE~ 216 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKL-DYDEA 216 (377)
T ss_pred HHhhchHHHHHHHHHHHhc-cccHH
Confidence 9999999999999888876 44443
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.01 E-value=0.01 Score=41.26 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
|+++..+|.+|..+|++++|.++++++++++|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46889999999999999999999999999987
No 213
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.1 Score=53.33 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhc--cCCCh-HHHH-HHHHHHHHHHHHHHHccCHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDIS--RISDS-DERK-LLLDINIARSRTAWEVLEQNLAIT 201 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~--~~~~~-~e~~-~~l~~l~~rA~~a~~~g~~~~A~~ 201 (733)
..-.+....-..-||.+++.|+|..|..+|..|+..+..+... +.+++ -+.+ ...-++++-+-+.+..|+|-++++
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 4456667777889999999999999999999999988865543 33222 1111 123366677889999999999999
Q ss_pred HHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 202 LLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 202 ~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
..+.++...|++.+ +||..|+++...=+ ..+|-..|++++++
T Consensus 252 h~seiL~~~~~nvK-------A~frRakAhaa~Wn---~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 252 HCSEILRHHPGNVK-------AYFRRAKAHAAVWN---EAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHhcCCchHH-------HHHHHHHHHHhhcC---HHHHHHHHHHHHhc
Confidence 99999999888765 49999999998888 89999999999998
No 214
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.96 E-value=1.6 Score=54.46 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH--H
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK--F 521 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~--~ 521 (733)
....+|.+.++|++|.++|+.-++-+. ...++++..+...++.++-+.|.+.+.+|+++-| .-+..+.. +
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 357788999999999999999876333 2357899999999999999999999999999999 66666653 4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.+-.+.||-|++...++.+....+...|+-..-+..-++.|++..++..|+.++.+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 55556899999999999999888888898887778888899999999999999983
No 215
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=3.8 Score=45.90 Aligned_cols=374 Identities=13% Similarity=0.072 Sum_probs=207.8
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
..++++.|-.+|++|++... + . ..+-+--|..-|+..+..-|....+||..+.|+-.+ .
T Consensus 85 sq~e~~RARSv~ERALdvd~-----r-----~----itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-------l 143 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-----R-----N----ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-------L 143 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-----c-----c----chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-------H
Confidence 45555666677777665431 1 0 122233367888888899999999999999987321 1
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.|-.--.--..|+ ...|.+.|++=++. .|.. ++|....+--+..++.++|...|+.-.-
T Consensus 144 WyKY~ymEE~LgN---i~gaRqiferW~~w---~P~e---------------qaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 144 WYKYIYMEEMLGN---IAGARQIFERWMEW---EPDE---------------QAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHcC---CCcH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 2211111113456 77778778777766 4311 2565445555556677788888776643
Q ss_pred cCCCCCCCCCcHH--HHHHHHHHhcCChHHHHHHHHHhh---hccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhc
Q 004720 304 GSFDGGDHHASLP--VLAMKAWLGLGRYNEAELELRGMV---EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLG 378 (733)
Q Consensus 304 ~~~~~~~~~p~~~--~lk~~il~~~g~~deAi~~l~~~l---~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~ 378 (733)
.||.+. .--++.-.+.|...-+...+...+ .+....+.++++.+.+=... +-++-.+.++...++
T Consensus 203 -------~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q---kE~ERar~iykyAld 272 (677)
T KOG1915|consen 203 -------VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ---KEYERARFIYKYALD 272 (677)
T ss_pred -------ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 467655 333455556666555555544333 22223334443333322111 112222222222233
Q ss_pred cCCch-HH-HHHHHH------------------------HHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhh----
Q 004720 379 RCHVS-AK-AAVRMA------------------------HRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFV---- 428 (733)
Q Consensus 379 ~~~~~-~~-~a~~~l------------------------~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~---- 428 (733)
+-..+ .. .....+ +..+ ..+|.+-+.|..-..+.......+.|.+.+.
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v--~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV--SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH--HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 32221 01 111100 0111 2334444444333333333222233333322
Q ss_pred -cchhHHHhhHHH-HHHHH-HH-HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 429 -GDAAAKERIAMH-AVLWN-CA-SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 429 -g~~~~~~~~~~~-~llW~-~g-~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
-++.....-|-- ..||- .+ -.-...+|.+.+.+.|+.+|++.|... -..||+....|.--+...++..|..++
T Consensus 351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk---FtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK---FTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc---chHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 122222222322 23443 22 233678999999999999999999664 589999999999999999999999999
Q ss_pred HHHHhhCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 505 TEAEKLEP--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 505 ~~A~~ldp--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
-.|+-..| -++.-|.-+. ++.+++|.....|+++....+.+-..-+--+.+-...|+.+-+...++.-++
T Consensus 428 G~AIG~cPK~KlFk~YIelE--lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 428 GNAIGKCPKDKLFKGYIELE--LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHhccCCchhHHHHHHHHH--HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 99998888 3444454444 4567999999999999876443222111122333446778877766666655
No 216
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.32 Score=49.50 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=92.9
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..+..+.++|+.|-=.++.+.|..+|-+|.+.--... +..+...+.+- |.-+.+.++.++|+.++++++++
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~---skhDaat~Yve------A~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG---SKHDAATTYVE------AANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC---CchhHHHHHHH------HHHHhhccChHHHHHHHHHHHHH
Confidence 3457788888888888888999999999988643211 10121111111 22333677999999999999998
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhc-CCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSK-NETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~-~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
..+-... ..-|.-...+|..+-.. .+ +++|+.+|++|-+......... +.. +++.-.|.--...
T Consensus 103 yt~~Grf-~~aAk~~~~iaEiyEsdl~d---~ekaI~~YE~Aae~yk~ees~s---------sAN--KC~lKvA~yaa~l 167 (288)
T KOG1586|consen 103 YTDMGRF-TMAAKHHIEIAEIYESDLQD---FEKAIAHYEQAAEYYKGEESVS---------SAN--KCLLKVAQYAAQL 167 (288)
T ss_pred HHhhhHH-HHHHhhhhhHHHHHhhhHHH---HHHHHHHHHHHHHHHcchhhhh---------hHH--HHHHHHHHHHHHH
Confidence 6543221 11122223455544333 55 9999999999999865432111 111 2444444444556
Q ss_pred CcHHHHHHHHHHHHc
Q 004720 289 GEYESVIKCVRVLRE 303 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~ 303 (733)
++|.+|+..|+.+-.
T Consensus 168 eqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999876655
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.78 E-value=0.023 Score=42.33 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
.+..++..|..+|++++|++.|+++++.+| ++...+.+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578899999999999999999999999999 8877666543
No 218
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.76 E-value=0.018 Score=39.79 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFD 473 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~ 473 (733)
+...|..+++.|+|++|+++|++++.+.|.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4568999999999999999999999998854
No 219
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.68 E-value=0.66 Score=45.79 Aligned_cols=128 Identities=12% Similarity=0.079 Sum_probs=97.1
Q ss_pred cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhc
Q 004720 194 LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGL 273 (733)
Q Consensus 194 g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el 273 (733)
=|.+.+..-..+..+..|+... .|.+|..+...|+ |.+|...|++++.= +-.. +
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqn--------r~rLa~al~elGr---~~EA~~hy~qalsG----~fA~---d-------- 123 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQN--------RYRLANALAELGR---YHEAVPHYQQALSG----IFAH---D-------- 123 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHH--------HHHHHHHHHHhhh---hhhhHHHHHHHhcc----ccCC---C--------
Confidence 3455555555555555554322 5667888888899 99999999999873 2111 0
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ 350 (733)
...+..++++.+..+++-.|...++.+-+.++ .-..|.+.++-++.|...|++.+|+..++-.+.+.|.+...+
T Consensus 124 -~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p--a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~ 197 (251)
T COG4700 124 -AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP--AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI 197 (251)
T ss_pred -HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC--ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH
Confidence 23677899999999999999999888877654 345677889999999999999999999999998888887764
No 220
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.62 E-value=6.4 Score=46.11 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
.+..+++.-...-|.++.|...|-+|++++. ++
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 4566777777778999999999999999987 54
No 221
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.61 E-value=0.37 Score=45.67 Aligned_cols=119 Identities=10% Similarity=0.034 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+.-+++-|.-.++.|+|++|++.++....--| . ...++.+.-.|...|++++|+..++.+.++.+.+|++=..--.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 45578889999999999999999999888877 3 4567888999999999999999999999999888861111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCC
Q 004720 557 EAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGN 605 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~ 605 (733)
.++. +.......|..++. ...| +.++-.+++-+.+++.+-|++
T Consensus 90 ~gL~--~~~~~~~~~~~~~~-~drD---~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 90 RGLS--YYEQDEGSLQSFFR-SDRD---PTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHH--HHHHhhhHHhhhcc-cccC---cHHHHHHHHHHHHHHHHCcCC
Confidence 1111 22222244555552 4344 666777777777776655544
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.56 E-value=6.6 Score=45.87 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHH------------HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCV------------RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l------------~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
.||.||+.-+..-.++-|...+ +.+.++ | +-...+.++-...|+++||++.+.
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i-------~-s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTI-------H-SKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhh-------h-hHHHHhHhHhhhhcchhHhhhhhh
Confidence 7888888776665555555443 333332 1 112455666666788888777654
No 223
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=4.1 Score=42.83 Aligned_cols=249 Identities=15% Similarity=0.100 Sum_probs=132.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
|+.++..+++++|+..|.+.+.--.. ..+...+.-....++|+.+..+|+.++..+-+.....+.+-+.++
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-------- 81 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-------- 81 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch--------
Confidence 77888999999999999999865211 222334455667889999999999554444454444444433322
Q ss_pred hhhhhhhcHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH-------HHHHHhcCChHHHHHHHH
Q 004720 266 ETTELKGLKFKTLRFISAIHLQ-KGEYESVIKCVRVLREGSFDGGDHHASLPVLA-------MKAWLGLGRYNEAELELR 337 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~-~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk-------~~il~~~g~~deAi~~l~ 337 (733)
...++.|.|..-.-. .+.++..++..+.+.+-. ..-.--|++ +-++++.|.|.+|+..+.
T Consensus 82 -------k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA-----~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 82 -------KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWA-----DREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred -------hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 134466666665533 346666655444333311 000111333 346778899999998876
Q ss_pred Hhhhc---cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 004720 338 GMVEI---KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV 414 (733)
Q Consensus 338 ~~l~~---~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l 414 (733)
..+.. .|....+ -..-+|. .+.+..++.+ .+...+-.+|......+. .+|
T Consensus 150 ~ll~ElKk~DDK~~L--i~vhllE----SKvyh~irnv-----~KskaSLTaArt~Ans~Y---CPp------------- 202 (421)
T COG5159 150 PLLHELKKYDDKINL--ITVHLLE----SKVYHEIRNV-----SKSKASLTAARTLANSAY---CPP------------- 202 (421)
T ss_pred HHHHHHHhhcCccce--eehhhhh----HHHHHHHHhh-----hhhhhHHHHHHHHhhccC---CCH-------------
Confidence 55421 1111111 0011111 1222222211 111111111111111111 111
Q ss_pred HHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC
Q 004720 415 AELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL 494 (733)
Q Consensus 415 ~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l 494 (733)
++..+. .+ ..|--+....||..|..+|-.|++=+....++ ..-+..++.+.+.-+.+
T Consensus 203 ----------------qlqa~l----DL--~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d-~kAc~sLkYmlLSkIMl 259 (421)
T COG5159 203 ----------------QLQAQL----DL--LSGILHCDDRDYKTASSYFIEALEGFTLLKMD-VKACVSLKYMLLSKIML 259 (421)
T ss_pred ----------------HHHHHH----HH--hccceeeccccchhHHHHHHHHHhccccccch-HHHHHHHHHHHHHHHHH
Confidence 000001 11 15667788999999999999999755444332 34556677777777777
Q ss_pred CCHHHHHHHHH
Q 004720 495 SLIDRAQEYIT 505 (733)
Q Consensus 495 ~~~~~A~e~~~ 505 (733)
+..++...+++
T Consensus 260 N~~~evk~vl~ 270 (421)
T COG5159 260 NRREEVKAVLR 270 (421)
T ss_pred hhHHHHHHHHc
Confidence 77777766664
No 224
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.25 E-value=0.037 Score=38.46 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+.+++++|..++..|+ +++|+..|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD---YEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC---chHHHHHHHHHHHH
Confidence 4679999999999999 99999999999999
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=0.2 Score=52.21 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=80.0
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
-+|+-+..++..|+ |.+|..-|..-++- -|... .....++-|+++++.+|+|+.|...+..+.
T Consensus 143 ~~Y~~A~~~~ksgd---y~~A~~~F~~fi~~---YP~s~-----------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 143 KLYNAALDLYKSGD---YAEAEQAFQAFIKK---YPNST-----------YTPNAYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHc---CCCCc-----------ccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 38999999999999 99999888876665 33221 223367778999999999999987766555
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCch
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPE 347 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~ 347 (733)
+..+ ..+.-|..+|-.+.++..+|+.|+|...+...+...|.+.
T Consensus 206 k~~P-~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 206 KDYP-KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HhCC-CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 5321 1333455667778899999999999999999986555443
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.16 E-value=1.9 Score=47.62 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh---cCChHHHHHHHHHhh
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG---LGRYNEAELELRGMV 340 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~---~g~~deAi~~l~~~l 340 (733)
+..+|--.|-+..+||.-++.++.+...+.-.-..+|.+.++.+-++.+ .|+.++|+..+..++
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 6667777899999999999999999886420023356666888999998 789999999987755
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.10 E-value=0.5 Score=44.63 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc--Cc---------hhHHHHHHHHHH----HhHHHHhcCCCCCHHHHH
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFG--LF---------EHYKSLANQYLT----FAKSALSKNETNSLNDAL 244 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~--~~---------~~~~~La~~~~~----~G~~~~~~~~~~~~e~A~ 244 (733)
|.-++.++......|+...++..+.++..+..+ .+ .....+...+.. ++..+...|+ +++|+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~---~~~a~ 82 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGD---YEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---HHHHH
Confidence 566667777888899999999999999988643 11 122344444444 3445667899 99999
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 245 KLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 245 ~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
.++++++.+ +|.+. ..++.|..+|...|++..|+..|+....
T Consensus 83 ~~~~~~l~~---dP~~E--------------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALAL---DPYDE--------------EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHH---STT-H--------------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCCH--------------HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999 76432 2788899999999999999999877655
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=2.6 Score=43.88 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=127.0
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHh-h--ccCCChHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLD-I--SRISDSDERKL----LLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~-~--~~~~~~~e~~~----~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
-+..--.+|+++.-..=+.+....++... . +++.++..... .-.+..+-+++....|.|.....++.+.++-+
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 34445567777766666666666665311 1 22212211111 11244455778889999999999999999876
Q ss_pred hc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 211 FG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 211 ~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
|. .|. +.--+|.....-|| .+.|-.++++.-+.-.+ .+. -.....+.++.+.+|+..+
T Consensus 208 ~e~~p~-------L~s~Lgr~~MQ~GD---~k~a~~yf~~vek~~~k--L~~---------~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 208 PEQEPQ-------LLSGLGRISMQIGD---IKTAEKYFQDVEKVTQK--LDG---------LQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred CcccHH-------HHHHHHHHHHhccc---HHHHHHHHHHHHHHHhh--hhc---------cchhHHHHhhhhhheeccc
Confidence 43 332 23346777778899 88888888876543111 111 1112347888899999999
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC---CchHHHHhHHHHH
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG---IPECIWVSAVEAY 357 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~---~~~~~~ls~~~ly 357 (733)
+|-.|...++.+... .+.+|.....|+-|++..|+..+|++.+..++...| ..+.+.+++-..|
T Consensus 267 n~a~a~r~~~~i~~~----D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRM----DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred chHHHHHHHhhcccc----CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 999998888777654 466777779999999999999999999998884443 2344444444333
No 229
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.82 E-value=0.27 Score=50.22 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=73.0
Q ss_pred HHHhcCCHHHHHHHHHHhhccCC-CCchhhhhhHHHHHHHHHHHHhCCCHH-------HHHHHHHHHHhhC--C-----C
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLP-FDVENRILRAKSFRVLCLCYLGLSLID-------RAQEYITEAEKLE--P-----N 513 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~-~~~~~~~~~akl~r~la~cyl~l~~~~-------~A~e~~~~A~~ld--p-----~ 513 (733)
.+-....+++|++-|.+|+.... .+.. +...|.++.++|.+|-.+|+-+ +|.+.|.+|...+ | +
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 34456789999999999985332 1211 3578999999999999999954 4555555554443 2 1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh--HHHHHH
Q 004720 514 IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT--DFLSLA 554 (733)
Q Consensus 514 ~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~--~lL~la 554 (733)
....|+.+.++-+.|++++|++.+.++......+. -++.+|
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 34566778888888888888888888887765433 444443
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=5.9 Score=41.30 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hhCC---ChHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE----KLEP---NIASA 517 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~----~ldp---~~~t~ 517 (733)
-....+.-.|.|..+.+.|+...+.+|.. ...+.+.++..-++.|+.+-|..++++.+ +++. +....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQ------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 35677788899999999999998866532 23688999999999999999999999554 4443 45556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
..+..+++-.+|+-+|...+.++..-.+.+|-...--+..-.=.|+...|++.++..++
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999988777766665553222221111224567777888887777
No 231
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=94.73 E-value=0.015 Score=64.53 Aligned_cols=98 Identities=17% Similarity=0.060 Sum_probs=76.3
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......++..++.+.|+.|...|+||+++.+. . ..++..||-+++..++|..|++++.+|++++|
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn----c----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP 69 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPN----C----------AIYFANRALAHLKVESFGGALHDALKAIELDP 69 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc----c----------eeeechhhhhheeechhhhHHHHHHhhhhcCc
Confidence 455667899999999999999999999998652 0 13555678889999999999999999999998
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
...+ .|+..|....+.+. +.+|...|++...+
T Consensus 70 ~~~K-------~Y~rrg~a~m~l~~---~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 70 TYIK-------AYVRRGTAVMALGE---FKKALLDLEKVKKL 101 (476)
T ss_pred hhhh-------eeeeccHHHHhHHH---HHHHHHHHHHhhhc
Confidence 7443 36666666666666 66776666666665
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.62 E-value=0.041 Score=38.76 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=28.1
Q ss_pred HHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 004720 504 ITEAEKLEP-NIASAFLKFKIYLQKNDQEGAIN 535 (733)
Q Consensus 504 ~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~ 535 (733)
|++|++++| ++...+.+..++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999 89999999999999999998863
No 233
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.58 E-value=0.11 Score=56.62 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc-------hhhhhhHH----HHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 438 AMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDV-------ENRILRAK----SFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 438 ~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~-------~~~~~~ak----l~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
|+...| ..|..+|++|+|..|+--|.-+|++...+. ..+.+.++ +.-.+..||+++++.+-|.+...+
T Consensus 175 wl~vAL-~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 175 WLQVAL-KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 444444 478888999998888888888877654221 00123333 456899999999999999999999
Q ss_pred HHhhCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 004720 507 AEKLEP-NIASAFLKFKIYLQKNDQEGAIN 535 (733)
Q Consensus 507 A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~ 535 (733)
.+-++| ++..++..+-+.-....+.+|.+
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999 77777766777666667766654
No 234
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.58 E-value=0.12 Score=40.33 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.+++.+|..|.++|+|++|.++++.+++++| +.-..-+.-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3678999999999999999999999999999 665554433
No 235
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.55 E-value=1.3 Score=43.76 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=87.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc-cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---ChHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSML-YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP---NIASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~-~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp---~~~t~~~~~ 521 (733)
.|+...+.|+|.+|...|..++. ++-.+ +.+.-.++.+.+.++++..|...+++..+-+| .+.+.++..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d-------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHD-------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCC-------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 68888999999999999999985 54433 34677889999999999999999998888877 688889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAV 568 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~ 568 (733)
+++--.|.++.|-..++-..++-+ +|.--+.-+....+.|....+.
T Consensus 168 R~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHH
Confidence 999999999988888888888766 3443333333333445444443
No 236
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.48 E-value=0.18 Score=50.76 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
+++..|.-+-..|=+.-|.-=|..+|.+.| ..+.++..++..+..-|+||.|.+.++..+++|| +-.+..++
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P-------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRP-------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCC-------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 455578888888888888888999998876 4567899999999999999999999999999999 66666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
.-..-=-|.++.|.+.+.++-...+.+|
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 5555556889999999988888776666
No 237
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.34 E-value=10 Score=41.74 Aligned_cols=304 Identities=13% Similarity=0.048 Sum_probs=160.9
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
.+--+++-+|..-...|+-.+|-+.=.++-.++.+ + ..-++.+|- |.+++..|+++.|..-|+-..+
T Consensus 82 drgyqALStGliAagAGda~lARkmt~~~~~llss--------D--qepLIhlLe--AQaal~eG~~~~Ar~kfeAMl~- 148 (531)
T COG3898 82 DRGYQALSTGLIAAGAGDASLARKMTARASKLLSS--------D--QEPLIHLLE--AQAALLEGDYEDARKKFEAMLD- 148 (531)
T ss_pred hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhc--------c--chHHHHHHH--HHHHHhcCchHHHHHHHHHHhc-
Confidence 34456777888888888888888877777655531 1 111334444 4477789999999887776553
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
+|+...-=-+.+| ......|+ ++.|.++-+++++. .+ .+.|. .+..-......|
T Consensus 149 ---dPEtRllGLRgLy---leAqr~Ga---reaAr~yAe~Aa~~---Ap-------------~l~WA-~~AtLe~r~~~g 202 (531)
T COG3898 149 ---DPETRLLGLRGLY---LEAQRLGA---REAARHYAERAAEK---AP-------------QLPWA-ARATLEARCAAG 202 (531)
T ss_pred ---ChHHHHHhHHHHH---HHHHhccc---HHHHHHHHHHHHhh---cc-------------CCchH-HHHHHHHHHhcC
Confidence 3433221111122 23446688 89999999999887 32 12232 333334456778
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCCcH------HHHHHHHHHhcC-ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHASL------PVLAMKAWLGLG-RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p~~------~~lk~~il~~~g-~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
+++.|++.++..++-. -..+.. .+|-.+.....+ +...|.......++..+....-.+-....|+..+.
T Consensus 203 dWd~AlkLvd~~~~~~----vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 203 DWDGALKLVDAQRAAK----VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred ChHHHHHHHHHHHHHH----hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence 9999999998666521 112221 133333333332 34455555444443222222222233333332222
Q ss_pred hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHH
Q 004720 363 TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAV 442 (733)
Q Consensus 363 ~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~l 442 (733)
-..+-++++..+ +..| |+..+
T Consensus 279 ---------------------~rKg~~ilE~aW--K~eP-HP~ia----------------------------------- 299 (531)
T COG3898 279 ---------------------LRKGSKILETAW--KAEP-HPDIA----------------------------------- 299 (531)
T ss_pred ---------------------hhhhhhHHHHHH--hcCC-ChHHH-----------------------------------
Confidence 011222333444 3334 33322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFK 522 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~k 522 (733)
..|-..+--+.+++=.+.+-++... ++|++......+...+--|+|..|..-.+-+.+.+|--...+++..
T Consensus 300 -----~lY~~ar~gdta~dRlkRa~~L~sl----k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAd 370 (531)
T COG3898 300 -----LLYVRARSGDTALDRLKRAKKLESL----KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLAD 370 (531)
T ss_pred -----HHHHHhcCCCcHHHHHHHHHHHHhc----CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHH
Confidence 0011111111222222222111110 1344455566677777778888888777777777774445556677
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcc
Q 004720 523 IYLQK-NDQEGAINQILAMTICL 544 (733)
Q Consensus 523 i~l~~-gd~e~Al~~l~~~~~~~ 544 (733)
|..-+ ||..+..+-+-+..+.+
T Consensus 371 IeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 371 IEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHhhccCchHHHHHHHHHHhcCC
Confidence 76655 88887777777766654
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.09 E-value=0.11 Score=38.75 Aligned_cols=39 Identities=26% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHH
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSL 220 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~L 220 (733)
.+...|.+++..|+++.|+.+|++++...|+++.....+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 345568999999999999999999999999988654433
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.72 E-value=6.4 Score=37.31 Aligned_cols=230 Identities=25% Similarity=0.239 Sum_probs=145.4
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.+.+..+...+..+....+.. .....+...+..+...++ +..+...+...... ... .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~--------------~ 92 (291)
T COG0457 36 LGELAEALELLEEALELLPNS-----DLAGLLLLLALALLKLGR---LEEALELLEKALEL-ELL--------------P 92 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc-----cchHHHHHHHHHHHHccc---HHHHHHHHHHHHhh-hhc--------------c
Confidence 566667777777777665432 122346667777778888 88888888777764 001 1
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHH-HHHhcCChHHHHHHHHHhhhccCCchHHHH
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMK-AWLGLGRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~-il~~~g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
.....+..++..+...+.+++++..+..+.... ............ ++...|++++|...+...+...+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------ 162 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALD----PDPDLAEALLALGALYELGDYEEALELYEKALELDPE------ 162 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC----CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Confidence 123366777888888888999999888887642 122222333333 677777777777776544221000
Q ss_pred hHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch
Q 004720 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA 431 (733)
Q Consensus 352 s~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~ 431 (733)
. . . .
T Consensus 163 ------------------------------------------~------~-~------~--------------------- 166 (291)
T COG0457 163 ------------------------------------------L------N-E------L--------------------- 166 (291)
T ss_pred ------------------------------------------c------c-c------h---------------------
Confidence 0 0 0 0
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
...++..+......++++.|+..+..++...+.. ....+..++.++...+++++|...+.++....
T Consensus 167 --------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 167 --------AEALLALGALLEALGRYEEALELLEKALKLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred --------HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 0001113333667788888888888888776542 23567888888888888888888888888888
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
| .....+....++...++.+.+...+.......+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 233 PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 8 355555555555566778888888877776644
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.68 E-value=0.084 Score=37.53 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
+.+.|..+.+.|+|++|+++|+.+|.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4568999999999999999999987654
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.68 E-value=13 Score=40.83 Aligned_cols=292 Identities=20% Similarity=0.103 Sum_probs=174.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
.-++...||-..|..|-.|+..+.....+. | +...-+...+-.|+ |+.|.+-|+.-++-
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqep---L--IhlLeAQaal~eG~---~~~Ar~kfeAMl~d------------- 149 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEP---L--IHLLEAQAALLEGD---YEDARKKFEAMLDD------------- 149 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchH---H--HHHHHHHHHHhcCc---hHHHHHHHHHHhcC-------------
Confidence 345668899999999999999765542221 2 12223556667899 99998766654442
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
.|+|.-.||.|-..--..|.++-|..+-+.+-.. .+.-|+..---++.....|+.|.|++-+.......-
T Consensus 150 ----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~----Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-- 219 (531)
T COG3898 150 ----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK----APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-- 219 (531)
T ss_pred ----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh--
Confidence 3345445554444444568899999887766553 456788888888888899999999998764331000
Q ss_pred hHHHHhHHHHHHHhchhhhHHHHHHHHHh-----hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHH
Q 004720 347 ECIWVSAVEAYFQAAGTAGAETAKGVFLG-----LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDE 421 (733)
Q Consensus 347 ~~~~ls~~~ly~~~~~~~a~~~lk~~l~~-----ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e 421 (733)
.. ....+-.+.+++. +++ .+| ..+.....+.+ +..||.
T Consensus 220 ----------ie----~~~aeR~rAvLLtAkA~s~ld-adp--~~Ar~~A~~a~--KL~pdl------------------ 262 (531)
T COG3898 220 ----------IE----KDVAERSRAVLLTAKAMSLLD-ADP--ASARDDALEAN--KLAPDL------------------ 262 (531)
T ss_pred ----------hc----hhhHHHHHHHHHHHHHHHHhc-CCh--HHHHHHHHHHh--hcCCcc------------------
Confidence 00 0001111111110 000 000 01111111111 111111
Q ss_pred HHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHH
Q 004720 422 RVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQ 501 (733)
Q Consensus 422 ~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~ 501 (733)
.+-. + --+..+|+.|+...+-...+-+-+-.| ||+.+.+|+ +.+.|+ -++
T Consensus 263 ---------------vPaa-v--~AAralf~d~~~rKg~~ilE~aWK~eP-----HP~ia~lY~-----~ar~gd--ta~ 312 (531)
T COG3898 263 ---------------VPAA-V--VAARALFRDGNLRKGSKILETAWKAEP-----HPDIALLYV-----RARSGD--TAL 312 (531)
T ss_pred ---------------chHH-H--HHHHHHHhccchhhhhhHHHHHHhcCC-----ChHHHHHHH-----HhcCCC--cHH
Confidence 0000 1 156778999999999999999888777 456555554 334444 444
Q ss_pred HHHHHHHhh---CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 502 EYITEAEKL---EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 502 e~~~~A~~l---dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.=++++.++ -| |....+.....++.-|++-.|...-+......+-..-+|.++-.+.-+.|++..+..=|..-+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555555443 56 7888899999999999998888777777666553334666665555556888888766665554
No 242
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.098 Score=56.11 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCC---CC---ch------hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLP---FD---VE------NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~---~~---~~------~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+.|+..|+.++|+.|..-|.+++.... .+ +. -+.++-.++++++.|-++.+.+..|+.....+++.++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 478899999999999999999886432 11 00 0235567899999999999999999999999999988
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
....+|.+...+....++++|++.++......+.+..
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 8899999999999999999999999888877665554
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.56 E-value=0.068 Score=37.64 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.7
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
.|++++++.|.+ +..++++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n-------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-------HHHHHHHHHHHHHCcCHHhhcC
Confidence 378888888755 5689999999999999999974
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.43 E-value=0.14 Score=36.39 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 484 FRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 484 ~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+.++|.+|.+.|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678999999999999999999997655
No 245
>PRK10941 hypothetical protein; Provisional
Probab=93.43 E-value=1.3 Score=46.72 Aligned_cols=80 Identities=11% Similarity=-0.042 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
.-..+.++|+-.+|++.+++++|..+++..+.++| ++.-.--+.-+|.+.|-+..|+..++.+....+.+|+.-.+..+
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 56788899999999999999999999999999999 88878889999999999999999999998777778886555544
Q ss_pred H
Q 004720 557 E 557 (733)
Q Consensus 557 ~ 557 (733)
.
T Consensus 258 l 258 (269)
T PRK10941 258 I 258 (269)
T ss_pred H
Confidence 3
No 246
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.38 E-value=3.5 Score=37.81 Aligned_cols=121 Identities=18% Similarity=0.062 Sum_probs=79.9
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHH--HHHHHHHHHH--HHHHHHccCHHHHHHHHHHHH
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDER--KLLLDINIAR--SRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~--~~~l~~l~~r--A~~a~~~g~~~~A~~~~~rA~ 207 (733)
+-+++-.|..-+..|-|..|...+.+|++.- |+-+.+|. ..-|+.+|.. +.+.+..|+|+++++-.++++
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~s------rtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVS------RTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH------TTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh------ccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3455666777788889999999999999863 22222111 1147877744 788889999998888888877
Q ss_pred hhhhc---C-chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 208 CLLFG---L-FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 208 ~l~~~---~-~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
..-.+ . .+.-+.-..+-++.+..+-..|. .++|++.|+.+-+++.+.+++.
T Consensus 83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr---~~eA~~~fr~agEMiaERKGE~ 137 (144)
T PF12968_consen 83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGR---KEEALKEFRMAGEMIAERKGEM 137 (144)
T ss_dssp HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH--S--
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHcCCC
Confidence 64221 1 12223344556678888889999 9999999999999987765443
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.34 E-value=0.57 Score=53.65 Aligned_cols=110 Identities=18% Similarity=0.095 Sum_probs=83.2
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.++.+.|...+.+.....|..+ --++.-|+.+..+|+ .++|+.+|+++++.-.+ -.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~-------lfl~~~gR~~~~~g~---~~~Ai~~~~~a~~~q~~-------------~~Q 302 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA-------LFLFFEGRLERLKGN---LEEAIESFERAIESQSE-------------WKQ 302 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHhcC---HHHHHHHHHHhccchhh-------------HHh
Confidence 4566678888888887777644 235567999999999 99999999998854111 134
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc-HHHHHHHHHHhcCCh
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS-LPVLAMKAWLGLGRY 329 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~-~~~lk~~il~~~g~~ 329 (733)
+..-++..++.+|+-..+|++|.+++..+.+.+ +-.+. ..|+.+-|+...|+.
T Consensus 303 l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s----~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 303 LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES----KWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHhhccc
Confidence 455688899999999999999999999998742 22222 239999999999988
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.19 E-value=2.7 Score=41.94 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=73.6
Q ss_pred HHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 004720 223 QYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLR 302 (733)
Q Consensus 223 ~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~ 302 (733)
.....++.....++ +++|..-|+.++.. .. + +.++.-+-..|+.+.++.+.+|+|++.++-..
T Consensus 91 aaL~lAk~~ve~~~---~d~A~aqL~~~l~~---t~-D----------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 91 AALELAKAEVEANN---LDKAEAQLKQALAQ---TK-D----------ENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHhhcc---HHHHHHHHHHHHcc---ch-h----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 34456778888899 99999999998875 21 1 23444455568999999999999999888665
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
. ..-.+-...+++.+++..|+-++|+..+...+..
T Consensus 154 ~-----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 154 E-----ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred c-----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 4 1122333489999999999999999999877743
No 249
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=27 Score=42.85 Aligned_cols=297 Identities=16% Similarity=0.137 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHHHhHHHhhcccccccccCCCCCChhhHHhHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhcc
Q 004720 66 NSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDL 145 (733)
Q Consensus 66 ~~~~~~l~~~a~~LWN~~v~~~~~~~~~~~~~~~~~~~~a~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~ 145 (733)
...|--+.+.-..||+-+....|. -. |++--+.+..+.+....|+++--..+-+|.++
T Consensus 941 ~~aRYlv~R~D~~LW~~VL~e~n~------------~r----RqLiDqVv~tal~E~~dPe~vS~tVkAfMtad------ 998 (1666)
T KOG0985|consen 941 SQARYLVERSDPDLWAKVLNEENP------------YR----RQLIDQVVQTALPETQDPEEVSVTVKAFMTAD------ 998 (1666)
T ss_pred HHHHHHHhccChHHHHHHHhccCh------------HH----HHHHHHHHHhcCCccCChHHHHHHHHHHHhcC------
Confidence 445666777778899988877442 11 66666677777666666665544444444433
Q ss_pred CCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHH
Q 004720 146 KKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYL 225 (733)
Q Consensus 146 g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~ 225 (733)
=+..=++.+||-+ .+.+-=.+.+.. -.+|+.- + ..-+...-.++.+|..+.+...-. --.....+|
T Consensus 999 -Lp~eLIELLEKIv-------L~~S~Fse~~nL-QnLLiLt---A-ikad~trVm~YI~rLdnyDa~~ia-~iai~~~Ly 1064 (1666)
T KOG0985|consen 999 -LPNELIELLEKIV-------LDNSVFSENRNL-QNLLILT---A-IKADRTRVMEYINRLDNYDAPDIA-EIAIENQLY 1064 (1666)
T ss_pred -CcHHHHHHHHHHh-------cCCcccccchhh-hhhHHHH---H-hhcChHHHHHHHHHhccCCchhHH-HHHhhhhHH
Confidence 2333333333333 111100111111 1122111 1 123444555666665544321000 011222234
Q ss_pred HHhHHHHhcCCCCCHHHHHH-------HHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 226 TFAKSALSKNETNSLNDALK-------LMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 226 ~~G~~~~~~~~~~~~e~A~~-------~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
.-+-..+++-+. +..|++ -+.+|++..++.. .-.+|..||.+.++.+...+|++.|
T Consensus 1065 EEAF~ifkkf~~--n~~A~~VLie~i~~ldRA~efAe~~n---------------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDM--NVSAIQVLIENIGSLDRAYEFAERCN---------------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHHHHHHhcc--cHHHHHHHHHHhhhHHHHHHHHHhhC---------------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 333333443332 344433 2345555533321 1127888899988888877787766
Q ss_pred HHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh---ccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHh
Q 004720 299 RVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE---IKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLG 375 (733)
Q Consensus 299 ~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~---~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ 375 (733)
-++ .+|+.+.--+++..+.|.+++-++++.|.=. .+..... ++-+|.+.++
T Consensus 1128 ika---------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~e----Li~AyAkt~r------------- 1181 (1666)
T KOG0985|consen 1128 IKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSE----LIFAYAKTNR------------- 1181 (1666)
T ss_pred Hhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHH----HHHHHHHhch-------------
Confidence 544 5788887778888888888888888765421 1111000 0111111110
Q ss_pred hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC
Q 004720 376 LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD 455 (733)
Q Consensus 376 ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~ 455 (733)
--.+++.+.|+..+ -+-.-|+.+|+.|.
T Consensus 1182 --------------------------------------------l~elE~fi~gpN~A--------~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1182 --------------------------------------------LTELEEFIAGPNVA--------NIQQVGDRCFEEKM 1209 (1666)
T ss_pred --------------------------------------------HHHHHHHhcCCCch--------hHHHHhHHHhhhhh
Confidence 01122222222222 12236999999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE 508 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~ 508 (733)
|+.|--.|.-.- + +-+++.....+|+|.-|.....+|-
T Consensus 1210 y~aAkl~y~~vS-----------N----~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1210 YEAAKLLYSNVS-----------N----FAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hHHHHHHHHHhh-----------h----HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999887776531 1 4567888889999999988887763
No 250
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.01 E-value=0.3 Score=55.40 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=78.9
Q ss_pred HHHHHHHH-HccCHHHHHHHHHHHHhhhhcCc-hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 184 IARSRTAW-EVLEQNLAITLLNRAKCLLFGLF-EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 184 ~~rA~~a~-~~g~~~~A~~~~~rA~~l~~~~~-~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
++-|+.|| .+|+...|+.|+.+|..+.|... -. +.+++..+++-+- ..+|-+++.+++.+....
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~-------~v~la~~~~~~~~---~~da~~~l~q~l~~~~se---- 675 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP-------LVNLANLLIHYGL---HLDATKLLLQALAINSSE---- 675 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhccc-------HHHHHHHHHHhhh---hccHHHHHHHHHhhcccC----
Confidence 35699999 78999999999999999888522 12 3344444445554 888999999999993221
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH--HHHHHH
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP--VLAMKA 322 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~--~lk~~i 322 (733)
+- .+..+|+.|+...+.++|++.++.+.+. .+.+|... +++++|
T Consensus 676 ---pl----------~~~~~g~~~l~l~~i~~a~~~~~~a~~~----~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 676 ---PL----------TFLSLGNAYLALKNISGALEAFRQALKL----TTKCPECENSLKLIRC 721 (886)
T ss_pred ---ch----------HHHhcchhHHHHhhhHHHHHHHHHHHhc----CCCChhhHHHHHHHHH
Confidence 11 5677899999999999999999888874 34555544 566655
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.00 E-value=8.4 Score=36.50 Aligned_cols=125 Identities=18% Similarity=0.074 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH-HHHhCCCHHHHHHHHHHHHhhCC----ChHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL-CYLGLSLIDRAQEYITEAEKLEP----NIASAFL 519 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~-cyl~l~~~~~A~e~~~~A~~ldp----~~~t~~~ 519 (733)
..|......++|..+++.+..++...+.+.. . ...... +|...|++++|...+.+++..+| .....+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 100 NLGLLLEALGKYEEALELLEKALALDPDPDL-----A--EALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 4677788888899999999999887664421 1 122223 89999999999999999977766 2233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDF-TTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~-~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
....+...++.+.|+..+.......+. ...............+....++..+...+.
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 455567788999999999999888775 344444444555556667777777777666
No 252
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=19 Score=40.62 Aligned_cols=292 Identities=13% Similarity=0.151 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhh----h-----------c--------CchhHHHHHHHHHHHhHHHHhcCCCC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLL----F-----------G--------LFEHYKSLANQYLTFAKSALSKNETN 238 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~----~-----------~--------~~~~~~~La~~~~~~G~~~~~~~~~~ 238 (733)
+++.+..-|...|+-..+...+++.-+-- + . .|+. ...+.+|.+--..-.-.|-
T Consensus 214 yl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpke-qicaLV~l~tv~hsm~~gy-- 290 (629)
T KOG2300|consen 214 YLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKE-QICALVYLVTVIHSMPAGY-- 290 (629)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHh-hhHhhhhhhHHhhhhhhHH--
Confidence 46677777778888887777665443221 1 0 1111 1122233322222223344
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc----
Q 004720 239 SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS---- 314 (733)
Q Consensus 239 ~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~---- 314 (733)
|+++.++=.+++...++-+....- .+-+.-.+...+..++.|-+-.|++.+|++-+.-+.+- ....|.
T Consensus 291 -~~~~~K~tDe~i~q~eklkq~d~~---srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w----~~r~p~~~Ll 362 (629)
T KOG2300|consen 291 -FKKAQKYTDEAIKQTEKLKQADLM---SRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNW----CTRFPTPLLL 362 (629)
T ss_pred -HHHHHHHHHHHHHHHhhcccccch---hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----HHhCCchHHH
Confidence 788888888888876665433211 12234456668888899999999999999876555542 123333
Q ss_pred ------HHHHHHHHHHhcCChHHHHHHHHHhhhcc---CCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHH
Q 004720 315 ------LPVLAMKAWLGLGRYNEAELELRGMVEIK---GIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAK 385 (733)
Q Consensus 315 ------~~~lk~~il~~~g~~deAi~~l~~~l~~~---~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~ 385 (733)
..++.+--...-+-++.|+.++...++.. +.-...-++++-.|...++ . +
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~------------------~---e 421 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD------------------A---E 421 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc------------------H---H
Confidence 12333333334467899999987766321 1111112222222322211 0 1
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004720 386 AAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEK 465 (733)
Q Consensus 386 ~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~ 465 (733)
....+++.+ +|.+...+. ...-...+++-.|--.|++++|.||-.+..+
T Consensus 422 d~y~~ld~i-----~p~nt~s~s--------------------------sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e 470 (629)
T KOG2300|consen 422 DLYKALDLI-----GPLNTNSLS--------------------------SQRLEASILYVYGLFAFKQNDLNEAKRFLRE 470 (629)
T ss_pred HHHHHHHhc-----CCCCCCcch--------------------------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111222222 111110000 0011123455689999999999999999999
Q ss_pred hhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CChHHHH----HHHHHHHhcCC--HHHHHHH
Q 004720 466 SMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE---PNIASAF----LKFKIYLQKND--QEGAINQ 536 (733)
Q Consensus 466 aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld---p~~~t~~----~~~ki~l~~gd--~e~Al~~ 536 (733)
.|..-.. ++..--.+-.+--++.+++.+|+..++.+.+.-+.++. |++.+++ +.-+++...|+ .+.+.+.
T Consensus 471 ~Lkmana-ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~ 549 (629)
T KOG2300|consen 471 TLKMANA-EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEA 549 (629)
T ss_pred HHhhcch-hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 9986521 11112334445667778888899999999988777664 3555554 23344555555 3444433
Q ss_pred H
Q 004720 537 I 537 (733)
Q Consensus 537 l 537 (733)
+
T Consensus 550 ~ 550 (629)
T KOG2300|consen 550 F 550 (629)
T ss_pred H
Confidence 3
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.86 E-value=2 Score=48.43 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=94.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc----
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR---- 262 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~---- 262 (733)
.--||+..+.+.-+....+|+++.|.-+ ..|.-++. .+..+..++..+|++|++..+..-+...
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCA-------dAYILLAE-----EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCA-------DAYILLAE-----EEASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhh-------HHHhhccc-----ccccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 3478999999999999999999998644 33543333 2222378999999999998554322110
Q ss_pred cchh----hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 263 TREE----TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 263 ~~~~----~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+.. .........-+-+.||.|.-+.|..++|++.+..+.+.++ ...+-.+.+..+++++..++|+++..-+.+
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p--~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP--NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC--ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0000 0000111233567799999999999999999888876432 223445669999999999999998877653
No 254
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.84 E-value=7.4 Score=42.09 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=91.1
Q ss_pred hhHHhHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHH
Q 004720 102 YAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLD 181 (733)
Q Consensus 102 ~~~a~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~ 181 (733)
+..-.+|.+.+.++ ......+...++.++.+-+.|+++.|...+.++....+..... ...
T Consensus 126 ~~il~~R~~~l~~~----------~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----------~~~ 185 (352)
T PF02259_consen 126 EPILSLRRLVLSLI----------LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----------LPR 185 (352)
T ss_pred HHHHHHHHHHHhcc----------cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----------Ccc
Confidence 34457788888877 1113345677888999999999999999998887654211100 124
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh-hh-c-------------------------CchhHHHHHHHHHHHhHHHHhc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCL-LF-G-------------------------LFEHYKSLANQYLTFAKSALSK 234 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l-~~-~-------------------------~~~~~~~La~~~~~~G~~~~~~ 234 (733)
+....|...|..|+...|+..++....- .. . ........+.+++.+|+-....
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 6667799999999999999999888771 11 1 1223456778888888866665
Q ss_pred ------CCCCCHHHHHHHHHHHHHH
Q 004720 235 ------NETNSLNDALKLMNEALEL 253 (733)
Q Consensus 235 ------~~~~~~e~A~~~l~~Alel 253 (733)
++ ++++.+.|+++.++
T Consensus 266 ~~~~~~~~---~~~~~~~~~~a~~~ 287 (352)
T PF02259_consen 266 YSKLSSES---SDEILKYYKEATKL 287 (352)
T ss_pred cccccccc---HHHHHHHHHHHHHh
Confidence 55 88889999999888
No 255
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.76 E-value=2.1 Score=48.02 Aligned_cols=257 Identities=13% Similarity=0.064 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH---HHhh---C---
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITE---AEKL---E--- 511 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~---A~~l---d--- 511 (733)
.+.+|.|.++|....|-.|++.-..-..+...-+. ..-+......-.-|+...+.++|..+.+- .+.. .
T Consensus 101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~--~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLES--SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 35567888888888888888776554332221211 23444445555566666777777765542 1111 0
Q ss_pred ---C----------Ch------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHH
Q 004720 512 ---P----------NI------------ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSV 566 (733)
Q Consensus 512 ---p----------~~------------~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~ 566 (733)
| +. ..+.+.-+.+++..+...+..-++.++...+.++..|.+-.+.--..||.+.
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~k 258 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPK 258 (696)
T ss_pred cccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHH
Confidence 1 00 1133444556677788888888898888888888888888888888899987
Q ss_pred HHHHHHHHHhhhcCCCCCchhHHHHHHHHHH--H--HHhhcCChhHHHHHHHHHHH-HhhhcccCccCCCc---cccchh
Q 004720 567 AVAALSNLLNFYTSGKPMPTKEVVVLRTIVT--I--LTQETGNESEVLKYMKRAHA-RTSEIGANCFFGTE---EAGRRE 638 (733)
Q Consensus 567 a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~--l--~~~~~~~~~~~l~~~~~A~~-~l~~~~~~~~~~~~---~~~~~E 638 (733)
|.+-| +...-...+..+..+.+.||+.- | |+-.-+...--..+|++|++ .-+++.- .+-+.. -...+.
T Consensus 259 A~KlL---~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~-g~~~~~~~tls~nks 334 (696)
T KOG2471|consen 259 AMKLL---LVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN-GLKPAKTFTLSQNKS 334 (696)
T ss_pred HHHHH---HhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc-cCCCCcceehhcccc
Confidence 76544 33221222334445667777741 0 11111223345668888886 4444311 111111 111222
Q ss_pred hHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHccccCCchhhhHHHHHHHHHHHHHHHHHHHhhhccccchHH
Q 004720 639 QNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMIASENQKQIALMNNE 714 (733)
Q Consensus 639 ~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~~~~~~~~~c~~ll~~~~~~~~~~~~~~~~~~~~~ 714 (733)
.+ +=||+|++.+..+.|-.+++.|..+.+.|+- ++-.-.|.--| -+|+ --..++++-+++++.++
T Consensus 335 ~e----ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~---nPrlWLRlAEc--Cima--~~~~l~ee~~~s~s~~~ 399 (696)
T KOG2471|consen 335 ME----ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR---NPRLWLRLAEC--CIMA--LQKGLLEEGNSSLSRSE 399 (696)
T ss_pred hh----hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHH--HHHH--hhhhhhhhccCCccccc
Confidence 22 3599999999999999999999999997664 33444445555 3565 44556666666666544
No 256
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.70 E-value=1.3 Score=43.84 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHH
Q 004720 217 YKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIK 296 (733)
Q Consensus 217 ~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~ 296 (733)
.+..-..+..+|.-+.+.|| ++.|+++|.++.+.+.. ...+...+..+..+.+..+++..+..
T Consensus 32 kesir~~~~~l~~~~~~~Gd---~~~A~k~y~~~~~~~~~--------------~~~~id~~l~~irv~i~~~d~~~v~~ 94 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGD---LEEALKAYSRARDYCTS--------------PGHKIDMCLNVIRVAIFFGDWSHVEK 94 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhcCC--------------HHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566778899999999999 99999999999998432 12345577788889999999999999
Q ss_pred HHHHHHccCCCCCCCCCcHHHHHHHHHH-----hcCChHHHHHHHHHhhh
Q 004720 297 CVRVLREGSFDGGDHHASLPVLAMKAWL-----GLGRYNEAELELRGMVE 341 (733)
Q Consensus 297 ~l~~a~~~~~~~~~~~p~~~~lk~~il~-----~~g~~deAi~~l~~~l~ 341 (733)
+++.+.... ++..++..-.+++++. ..++|.+|-..+...+.
T Consensus 95 ~i~ka~~~~---~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 95 YIEKAESLI---EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHH---hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 999998854 3333444455555544 44789998888876653
No 257
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.29 E-value=2 Score=43.89 Aligned_cols=104 Identities=14% Similarity=0.033 Sum_probs=67.5
Q ss_pred cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhc
Q 004720 194 LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGL 273 (733)
Q Consensus 194 g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el 273 (733)
-..+.|++.|.-|+-...-.......+|.++..++=.+-..++ .+....++++|++..++.-..... +. ...-
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~---~~~E~~fl~~Al~~y~~a~~~e~~-~~---~~~~ 163 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD---EENEKRFLRKALEFYEEAYENEDF-PI---EGMD 163 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHhCcC-CC---CCch
Confidence 3455666666655543322122234677888888888888888 677777777777766553211111 00 0112
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
...++..+|..+...|++++|.+.+..+...
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3458888999999999999999999999874
No 258
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.13 E-value=0.47 Score=53.30 Aligned_cols=94 Identities=10% Similarity=-0.011 Sum_probs=82.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL---SLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l---~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
.|+-.|-.+.+..|+..|..++...|. ..-++-|++.++++. |+.--|...|.+|+++|| ..+.+|.++
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~-------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPD-------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccc-------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 788888888899999999999887764 456888999999887 577889999999999999 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
......+.+.+|++|...++...+.
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCch
Confidence 9999999999999999999887653
No 259
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.03 E-value=0.22 Score=32.37 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
..+.+++.||...+++++|...+.++++++|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678999999999999999999999998877
No 260
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.94 E-value=1.2 Score=44.30 Aligned_cols=96 Identities=16% Similarity=0.042 Sum_probs=74.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYL 525 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l 525 (733)
.+..+++.+++++|+.-.+.+|.. |.|+ .-.+-+-.+++.+.+..|++|+|...++..-.-+-.....-++..+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~-t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ-TKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc-chhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHH
Confidence 788899999999999999999864 3332 355666788999999999999999988632111112334567899999
Q ss_pred hcCCHHHHHHHHHHHHhccC
Q 004720 526 QKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~ 545 (733)
.+||.++|...|+......+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 171 AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HcCchHHHHHHHHHHHHccC
Confidence 99999999999999888753
No 261
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=21 Score=38.60 Aligned_cols=284 Identities=15% Similarity=0.145 Sum_probs=147.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhh--h-cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 184 IARSRTAWEVLEQNLAITLLNRAKCLL--F-GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 184 ~~rA~~a~~~g~~~~A~~~~~rA~~l~--~-~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.-++...+...+++.++..+.+..+.. + ..++.....-....++|..+...|+ +++-...++..-.++..-.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~---~~~lr~li~~~Rpf~~~v~-- 82 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGD---AEELRDLITSLRPFLSSVS-- 82 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHhh--
Confidence 345666677788888999998888742 2 2444556667778899999999999 5555544444444432211
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccC-----cHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKG-----EYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEA 332 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~-----~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deA 332 (733)
...-+++.|.|.......+ ..+-+.+|++-+... +... +..--.+..|...++|.+|
T Consensus 83 ----------KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e-----kRtFLRq~Learli~Ly~d~~~YteA 147 (411)
T KOG1463|consen 83 ----------KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE-----KRTFLRQSLEARLIRLYNDTKRYTEA 147 (411)
T ss_pred ----------hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1123457777777766553 233345666666542 1100 1112334567777888888
Q ss_pred HHHHHHhhhc---cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHH
Q 004720 333 ELELRGMVEI---KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKL 409 (733)
Q Consensus 333 i~~l~~~l~~---~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ 409 (733)
+..+..+++. .|....+ .+.+... ++++..++.+ .+...+=..|....+-+. .+|
T Consensus 148 laL~~~L~rElKKlDDK~lL----vev~llE--SK~y~~l~Nl-----~KakasLTsART~AnaiY---cpP-------- 205 (411)
T KOG1463|consen 148 LALINDLLRELKKLDDKILL----VEVHLLE--SKAYHALRNL-----PKAKASLTSARTTANAIY---CPP-------- 205 (411)
T ss_pred HHHHHHHHHHHHhcccccce----eeehhhh--hHHHHHHhcc-----hhHHHHHHHHHHhhcccc---cCH--------
Confidence 8876554421 1111110 0000000 1112222110 000000000000000110 111
Q ss_pred HHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCchhhhhhHHHHHHHH
Q 004720 410 RAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSML-YLPFDVENRILRAKSFRVLC 488 (733)
Q Consensus 410 ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~-~~~~~~~~~~~~akl~r~la 488 (733)
++-.+.. -..|-.|...+||..|..+|-.|++ |..-+. +..-...+..|-
T Consensus 206 ---------------------qlQa~lD------LqSGIlha~ekDykTafSYFyEAfEgf~s~~~--~v~A~~sLKYMl 256 (411)
T KOG1463|consen 206 ---------------------QLQATLD------LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD--DVKALTSLKYML 256 (411)
T ss_pred ---------------------HHHHHHH------HhccceeecccccchHHHHHHHHHccccccCC--cHHHHHHHHHHH
Confidence 0100011 1256667777999999999999997 444332 145667788999
Q ss_pred HHHHhCCCHHHHHHHHHH--HHhhCC-ChHHHHHHHHHHHh--cCCHHHHHHHHH
Q 004720 489 LCYLGLSLIDRAQEYITE--AEKLEP-NIASAFLKFKIYLQ--KNDQEGAINQIL 538 (733)
Q Consensus 489 ~cyl~l~~~~~A~e~~~~--A~~ldp-~~~t~~~~~ki~l~--~gd~e~Al~~l~ 538 (733)
+|-+.++..++....+.. +++.+. .+....-.+..+-. ..|++.|+..|+
T Consensus 257 LcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 257 LCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred HHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 999999999987777652 333322 33333333333332 234555555553
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.72 E-value=1.4 Score=43.48 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=78.1
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|.-+++.|+++.|.++|+++-+.+-. ....+++.....++++..||+.....++.||..+.....
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTS-----------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 346799999999999999999998876421 112367888888999999999999999999998865522
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALE 252 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Ale 252 (733)
+ -.....+--.-|..++..++ |..|...|-.+.-
T Consensus 108 d-~~~~nrlk~~~gL~~l~~r~---f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 108 D-WERRNRLKVYEGLANLAQRD---FKEAAELFLDSLS 141 (177)
T ss_pred h-HHHHHHHHHHHHHHHHHhch---HHHHHHHHHccCc
Confidence 1 33444455556888888899 9999877766543
No 263
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.66 E-value=0.27 Score=33.42 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.++++|.||.++|++++|++.+++.++..|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 468899999999999999999999888877
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.51 E-value=0.4 Score=33.00 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=27.7
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+.+++.+|..+...|+ +++|...|++++++
T Consensus 1 a~~~~~lg~~y~~~~~---~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGD---YEEALEYFEKALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHTTS---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC---HHHHHHHHHHHHhh
Confidence 4579999999999999 99999999999998
No 265
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.27 E-value=4 Score=37.45 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=72.9
Q ss_pred HHHHHHHHHH--hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHH
Q 004720 218 KSLANQYLTF--AKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVI 295 (733)
Q Consensus 218 ~~La~~~~~~--G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl 295 (733)
+..+..|..+ |.-.+..+- |++|..-+.+|.++-..-|...-. +. ...-+-++-.|+.++...|.|++++
T Consensus 4 keVa~aY~aLs~ae~ql~~g~---~~eAa~s~r~AM~~srtiP~eEaF-Dh----~GFDA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 4 KEVAMAYMALSDAERQLQDGA---YEEAAASCRKAMEVSRTIPAEEAF-DH----DGFDAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHTTS-TTS----H----HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHhccCChHhhc-cc----ccHHHHHHHHHHHHHHhhccHHHHH
Confidence 3445556655 334455566 999999999999985554432211 11 2233557888899999999999877
Q ss_pred HHHHHHHccCC-------CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 296 KCVRVLREGSF-------DGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 296 ~~l~~a~~~~~-------~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
...+.++-++. +.++.+..+.|.+...+-.+|+.++|+..+++.
T Consensus 76 ~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 76 QSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 66655554332 112333345599999999999999999998753
No 266
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.21 E-value=36 Score=39.88 Aligned_cols=258 Identities=14% Similarity=0.124 Sum_probs=137.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCC
Q 004720 230 SALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGG 309 (733)
Q Consensus 230 ~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~ 309 (733)
..+..|+ +.+-+.-|++|..-. +|.-. +| +. ...|..+|..|-..|+.+.|...++.+.+.+-...
T Consensus 356 V~l~e~~---~~~~i~tyteAv~~v--dP~ka---~G----s~--~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 356 VKLYEGN---AAEQINTYTEAVKTV--DPKKA---VG----SP--GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred hhhhcCC---hHHHHHHHHHHHHcc--CcccC---CC----Ch--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 3345566 677777777776641 22111 12 11 23788899999999999999999999987431000
Q ss_pred CCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHH
Q 004720 310 DHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVR 389 (733)
Q Consensus 310 ~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~ 389 (733)
+.=..++..=++.-+...+++.|...+++...-|.++. + . |++++.+.-....+.+ ..+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-~-----~-~yd~~~pvQ~rlhrSl------------kiW-- 480 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-L-----E-YYDNSEPVQARLHRSL------------KIW-- 480 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-h-----h-hhcCCCcHHHHHHHhH------------HHH--
Confidence 00011223333444455677777777666654333332 1 1 2222111111111100 000
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 390 MAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 390 ~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
..+. |-.+++ +... .....++++.++-- +-..+.-|.|.-+.+.+-|++|.+.|+++..+
T Consensus 481 --s~y~------DleEs~-gtfe--stk~vYdriidLri---------aTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 481 --SMYA------DLEESL-GTFE--STKAVYDRIIDLRI---------ATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred --HHHH------HHHHHh-ccHH--HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 0000 000000 0000 00002333333211 11234447888888999999999999999987
Q ss_pred CC-CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--ChHHHHHHHHHH-HhcCCHHHHHHHHHHHHhccC
Q 004720 470 LP-FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP--NIASAFLKFKIY-LQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 470 ~~-~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp--~~~t~~~~~ki~-l~~gd~e~Al~~l~~~~~~~~ 545 (733)
++ ++.- +.=..|---..--.+-..+++|...|++|+...| +..|.|+.|-.. -.-|-...|+..|+......+
T Consensus 541 Fk~p~v~---diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 541 FKWPNVY---DIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred CCCccHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 75 3321 1112222222234556789999999999999888 677777765443 344677788888888766554
No 267
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=32 Score=38.94 Aligned_cols=135 Identities=18% Similarity=0.081 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC---CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--C--h
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYL---PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP--N--I 514 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~---~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp--~--~ 514 (733)
++-+....-.-.|+|.+|++-........ |..---+...+.+..-+|+.-..-+.|+.|...|.+|.++-. + .
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 33345555677899999987666555422 210000234567788888888888999999999999987744 3 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLDFT-------TDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~-------~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+.+.+.+-+|++.|+-+.--+.++.+.-...++ ..++..-+-++...++...+..-|..-++
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 567788999999888776666665555433221 13666666777888888887766666665
No 268
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.84 E-value=0.14 Score=54.73 Aligned_cols=101 Identities=16% Similarity=0.005 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
+.++....-.+-..+..|+++.|+..|+.|+++-+.+ -.++.-|+.+++..++...|+++|.+|..
T Consensus 111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~--------------a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 111 MDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL--------------AILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch--------------hhhcccccceeeeccCCchhhhhhhhhhc
Confidence 3344444455666677777777777777777765421 12333557777788888888888888888
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+.|++.+. |--.|...-..|+ .++|.+.|..+.++
T Consensus 177 in~Dsa~~-------ykfrg~A~rllg~---~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 177 INPDSAKG-------YKFRGYAERLLGN---WEEAAHDLALACKL 211 (377)
T ss_pred cCcccccc-------cchhhHHHHHhhc---hHHHHHHHHHHHhc
Confidence 87776554 4445666667777 78888877777776
No 269
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.72 E-value=1.2 Score=43.80 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHhhCC
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL-----------IDRAQEYITEAEKLEP 512 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~-----------~~~A~e~~~~A~~ldp 512 (733)
.-|++|+.-|+.||.+.|. ....+.++|.+|..++. |++|.++|++|...+|
T Consensus 49 ~miedAisK~eeAL~I~P~-------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPN-------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3578999999999999874 44678999999988853 7777778888888888
No 270
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.59 E-value=0.42 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPF 472 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~ 472 (733)
+++.|..++..|+|+.|+.+|+.++...|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 456899999999999999999999987663
No 271
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.26 E-value=0.57 Score=33.58 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
+.++.++|.+|...|++++|.+++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 567899999999999999999999998776
No 272
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.64 E-value=0.73 Score=32.99 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
+..+.++|..+...|+ +++|..++++++++.++-
T Consensus 2 a~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGR---YEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT----HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhh---cchhhHHHHHHHHHHHHH
Confidence 5678999999999999 999999999999996653
No 273
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.92 E-value=0.47 Score=32.18 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPF 472 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~ 472 (733)
+++.|..+++.|++++|++.|+..+.-+|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 567999999999999999999999988874
No 274
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.87 E-value=2.3 Score=41.90 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCC-------CCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 196 QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNET-------NSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 196 ~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~-------~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
|+.|...++.....+|.+++ .+++-|..++...+- ..+++|+.-|++|+.| +|.
T Consensus 7 FE~ark~aea~y~~nP~Dad-------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~--------- 67 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD-------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPN--------- 67 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH-------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT---------
T ss_pred HHHHHHHHHHHHHhCcHhHH-------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCc---------
Confidence 55677778887777777554 466666655554221 1167777777777777 442
Q ss_pred hhhhcHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHc
Q 004720 269 ELKGLKFKTLRFISAIHLQKG-----------EYESVIKCVRVLRE 303 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~-----------~~ekAl~~l~~a~~ 303 (733)
+..++..+|++|...+ .|++|..|++.+..
T Consensus 68 -----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 68 -----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp ------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 3448889999987653 37777777777766
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=4 Score=43.21 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=73.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhhC-CChHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA-EKLE-PNIASAFLKFKI 523 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A-~~ld-p~~~t~~~~~ki 523 (733)
.+......|++.+|...|..++...|.+ +.+..-++.||+..|+.+.|..++... .+.. +.....--....
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 6778889999999999999999987754 356788999999999999999998742 1111 112220111233
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
+.+..+..+.......+..-+ .+++.=...+......|..+.| |+.|+.....|
T Consensus 213 l~qaa~~~~~~~l~~~~aadP-dd~~aa~~lA~~~~~~g~~e~A---le~Ll~~l~~d 266 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAADP-DDVEAALALADQLHLVGRNEAA---LEHLLALLRRD 266 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhc
Confidence 333344433333333333332 2444323333444446666665 55555544443
No 276
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.44 E-value=68 Score=39.03 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=86.0
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQ 223 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~ 223 (733)
-.++|+.|..+.+++...... .+..............+|-++...|++++|+.....+....|.... ..-...
T Consensus 427 s~~r~~ea~~li~~l~~~l~~-----~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~--~~r~~~ 499 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKA-----PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY--RSRIVA 499 (894)
T ss_pred HccChHHHHHHHHHHHHHhCc-----CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc--hhhhhh
Confidence 456666666666655544431 1111222223356667788999999999999999999988775332 122334
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC--cHHHHHHHHHHH
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG--EYESVIKCVRVL 301 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~--~~ekAl~~l~~a 301 (733)
+...|....-+|+ +.+|..+.+++.++..+-... .+-.-+....+.+...+| .+......++..
T Consensus 500 ~sv~~~a~~~~G~---~~~Al~~~~~a~~~a~~~~~~-----------~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 500 LSVLGEAAHIRGE---LTQALALMQQAEQMARQHDVY-----------HLALWSLLQQSEILEAQGQVARAEQEKAFNLI 565 (894)
T ss_pred hhhhhHHHHHhch---HHHHHHHHHHHHHHHHHcccH-----------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5578999999999 999999999999985542111 111112222355666777 344444555555
Q ss_pred Hc
Q 004720 302 RE 303 (733)
Q Consensus 302 ~~ 303 (733)
..
T Consensus 566 ~~ 567 (894)
T COG2909 566 RE 567 (894)
T ss_pred HH
Confidence 54
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.40 E-value=15 Score=41.62 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
.|..+-+.|+.++|++.|+.-++.+|.+ +.--+..|+..|++.++.|.++...+.+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~-----~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNL-----DNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCcc-----chhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 5666678899999999999988777633 3445889999999999999999998887543
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.37 E-value=40 Score=36.29 Aligned_cols=49 Identities=27% Similarity=0.190 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 477 RILRAKSFRVLCLCYLGL------SLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 477 ~~~~akl~r~la~cyl~l------~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
....++++..+|.....+ ++.+.+...|.+|.+++| .....+..+..+.
T Consensus 248 ~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 248 KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 357889999999988888 999999999999999999 5555555444443
No 279
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=88.37 E-value=8.9 Score=40.74 Aligned_cols=134 Identities=13% Similarity=0.018 Sum_probs=90.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 004720 484 FRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQ-KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVAC 561 (733)
Q Consensus 484 ~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~-~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~ 561 (733)
+..+.....+.+..+.|..+|.+|.+..+ ........+.+-.. .+|.+.|.+.++...+....++++...-+...+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 33444455555669999999999986555 45555555666444 67777799999999999888999888888888999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 004720 562 QALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 562 ~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~ 622 (733)
++..-+...|+..+.....+ .+.-.+....|.+= ...|+.+.+.+..+++.+.+++
T Consensus 84 ~d~~~aR~lfer~i~~l~~~----~~~~~iw~~~i~fE-~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKE----KQSKKIWKKFIEFE-SKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCH----HHCHHHHHHHHHHH-HHHS-HHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhh
Confidence 99999998888888854333 11223332222222 2247888888888888887655
No 280
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.12 E-value=2 Score=36.40 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=48.5
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
.+.....-|.-++.+.+ ..+|+.-.+++++-... .+-++.++-.|+++|.++|.|++.+.+
T Consensus 5 ~ak~~ie~GlkLY~~~~---~~~Al~~W~~aL~k~~~--------------~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNE---TQQALQKWRKALEKITD--------------REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHhccch---HHHHHHHHHHHHhhcCC--------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667888888888 89999999999987332 224888999999999999999998866
No 281
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.11 E-value=1.7 Score=38.08 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=48.3
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhh--hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENR--ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~--~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
.....|||..|++-+.....+........ ....-...+++..+...|++++|.+.+++|+++-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35688999999999999887654332110 1345567889999999999999999999998873
No 282
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.96 E-value=1.4 Score=49.66 Aligned_cols=90 Identities=12% Similarity=-0.038 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWE---VLEQNLAITLL 203 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~---~g~~~~A~~~~ 203 (733)
.+...|+.+++.|+..+..+....|+..|.+|+..++.. .-+|+.||+++++ .|+.-.|+.++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~--------------~~~l~nraa~lmkRkW~~d~~~AlrDc 434 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA--------------IYLLENRAAALMKRKWRGDSYLALRDC 434 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch--------------hHHHHhHHHHHHhhhccccHHHHHHhH
Confidence 345668999999999999999999999999999876521 2467788888874 37888999999
Q ss_pred HHHHhhhhcCchhHHHHHHHHHHHhHH
Q 004720 204 NRAKCLLFGLFEHYKSLANQYLTFAKS 230 (733)
Q Consensus 204 ~rA~~l~~~~~~~~~~La~~~~~~G~~ 230 (733)
..|+.++|..-+.+.+|++.+..+++.
T Consensus 435 h~Alrln~s~~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 435 HVALRLNPSIQKAHFRLARALNELTRY 461 (758)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHhhH
Confidence 999999998888888888888888774
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.82 E-value=63 Score=37.92 Aligned_cols=254 Identities=16% Similarity=0.085 Sum_probs=133.1
Q ss_pred ccCHHHHHHHHHHHHhh----h-hcCchhHHHHHHHHHHHhHHHHhcC-----CCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 193 VLEQNLAITLLNRAKCL----L-FGLFEHYKSLANQYLTFAKSALSKN-----ETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l----~-~~~~~~~~~La~~~~~~G~~~~~~~-----~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
..|++.|+.++.++..- . ...|. ..+.+|..++... + ++.|.++|.+|-+. +. .
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~-------a~~~lg~~Y~~g~~~~~~d---~~~A~~~~~~aA~~---g~--~- 325 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPP-------AQYGLGRLYLQGLGVEKID---YEKALKLYTKAAEL---GN--P- 325 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCc-------cccHHHHHHhcCCCCcccc---HHHHHHHHHHHHhc---CC--c-
Confidence 35888999999999761 1 11222 3666777766643 4 78899999999887 32 1
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccC---cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhc----CChHHHHHH
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKG---EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGL----GRYNEAELE 335 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~---~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~----g~~deAi~~ 335 (733)
. ...+|+.+|..-. ++.+|.+++..+-+ .-|+.+.+-...++... .+...|...
T Consensus 326 ---~----------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~------~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 326 ---D----------AQYLLGVLYETGTKERDYRRAFEYYSLAAK------AGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred ---h----------HHHHHHHHHHcCCccccHHHHHHHHHHHHH------cCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 1 5567788886543 67899999998876 23556555555555544 256788888
Q ss_pred HHHhhhccCCchHH-HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECI-WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV 414 (733)
Q Consensus 336 l~~~l~~~~~~~~~-~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l 414 (733)
+.+..... .+... -+..+..|.......++-.+. ...-++...+....+..+...-. ...++....-..++..+
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~~~~~~~~~~~~--~~a~~g~~~~q~~a~~l~~~~~~--~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGVGRYDTALALYL--YLAELGYEVAQSNAAYLLDQSEE--DLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHccccccHHHHHHH--HHHHhhhhHHhhHHHHHHHhccc--cccccccccchhHHHHH
Confidence 87665322 22222 222333333211111111111 11111111111111111111100 11111000000000000
Q ss_pred HHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhc----CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHH
Q 004720 415 AELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRS----KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLC 490 (733)
Q Consensus 415 ~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~----~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~c 490 (733)
- ......|+... .-+.|..+|.- .+++.|..+|..+-+- . ++...|++.+
T Consensus 462 ~-------~~a~~~g~~~a---------~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~---------~-~~~~~nlg~~ 515 (552)
T KOG1550|consen 462 Y-------SRAAAQGNADA---------ILKLGDYYYYGLGTGRDPEKAAAQYARASEQ---------G-AQALFNLGYM 515 (552)
T ss_pred H-------HHHHhccCHHH---------HhhhcceeeecCCCCCChHHHHHHHHHHHHh---------h-hHHHhhhhhH
Confidence 0 00000011110 11256666544 5799999999998653 2 6778999999
Q ss_pred HHhC---CCHHHHHHHHHHHHhhCC
Q 004720 491 YLGL---SLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 491 yl~l---~~~~~A~e~~~~A~~ldp 512 (733)
|..- ..+..|+.++.++.+.+.
T Consensus 516 ~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 516 HEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred HhcCcCcchhHHHHHHHHHHHhcCc
Confidence 8754 338899999999888776
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.92 E-value=73 Score=37.72 Aligned_cols=197 Identities=16% Similarity=0.059 Sum_probs=109.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
.||+..--.|+|++|...|-.+..-+ ||.-++ .+.|| +-+.++++..+.++..
T Consensus 739 q~aei~~~~g~feeaek~yld~drrD---------LAielr------~klgD----------wfrV~qL~r~g~~d~d-- 791 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRRD---------LAIELR------KKLGD----------WFRVYQLIRNGGSDDD-- 791 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchhh---------hhHHHH------Hhhhh----------HHHHHHHHHccCCCcc--
Confidence 35677777788888888775554322 111111 23455 3356677665433321
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
.+.+-..+|+++..+.+.-.++.|.++|.+.... -..++||+.+..|++-+...+.+ ++
T Consensus 792 ------D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~ecly~le~f~~LE~la~~L---pe 850 (1189)
T KOG2041|consen 792 ------DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQIECLYRLELFGELEVLARTL---PE 850 (1189)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHHHHHHHHHhhhhHHHHHHhc---Cc
Confidence 3445568999999999999999999999877431 23478888888888755554433 22
Q ss_pred CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHH
Q 004720 345 IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERV 423 (733)
Q Consensus 345 ~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v 423 (733)
+.+ +.--++..+...+. +.|.+++-+ +..| ++|+...-++ .+ | +++..+.+-
T Consensus 851 ~s~-llp~~a~mf~svGMC~qAV~a~Lr-------~s~p--kaAv~tCv~L-----nQ-----W-~~avelaq~------ 903 (1189)
T KOG2041|consen 851 DSE-LLPVMADMFTSVGMCDQAVEAYLR-------RSLP--KAAVHTCVEL-----NQ-----W-GEAVELAQR------ 903 (1189)
T ss_pred ccc-hHHHHHHHHHhhchHHHHHHHHHh-------ccCc--HHHHHHHHHH-----HH-----H-HHHHHHHHh------
Confidence 221 11224455544444 445444432 1222 2222211111 00 1 122111111
Q ss_pred HHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004720 424 LALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKS 466 (733)
Q Consensus 424 ~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~a 466 (733)
+ .++.+.+++=+.+..+...++.-+||+.+++|
T Consensus 904 ------~----~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 904 ------F----QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ------c----cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 0 13445556666788888889999999999987
No 285
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.71 E-value=3.6 Score=36.03 Aligned_cols=67 Identities=19% Similarity=0.124 Sum_probs=54.3
Q ss_pred HHHHHccCHHHHHHHHHHHHhhhhcCc--hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 188 RTAWEVLEQNLAITLLNRAKCLLFGLF--EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 188 ~~a~~~g~~~~A~~~~~rA~~l~~~~~--~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
..+|..||+..|++.+.+..+...... .........+.++|..+...|+ +++|+..+++|+.+..+.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~---~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH---YEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998865422 2123466678889999999999 999999999999996653
No 286
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.00 E-value=4.7 Score=44.48 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcCCCCCChHH----HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH--HhhccCCCh-HHHHHHH
Q 004720 108 RHVAADLLSLAADVSGIPSPA----IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK--LDISRISDS-DERKLLL 180 (733)
Q Consensus 108 R~~a~~ll~~~~~~~~~~~~~----~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~--~~~~~~~~~-~e~~~~l 180 (733)
++--|+-..++.+.++++... -+-...+++-|..+++.|+|..|..-|..|.+++++ ....+.+++ ++..-+-
T Consensus 148 ~q~tc~~ae~~d~ls~~~~s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~va 227 (569)
T PF15015_consen 148 SQPTCQAAEIVDPLSAPNFSFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVA 227 (569)
T ss_pred CCCccccccccCCCCCCCcccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHH
Confidence 333344444443333333333 344578999999999999999999999999999984 222333332 2322222
Q ss_pred HHHH-HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004720 181 DINI-ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQY 224 (733)
Q Consensus 181 ~~l~-~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~ 224 (733)
...+ --+.+|+..++.+.|+.-..|++.+.|..+.-+...|.+.
T Consensus 228 SfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavf 272 (569)
T PF15015_consen 228 SFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVF 272 (569)
T ss_pred HHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHH
Confidence 2333 2378899999999999999999999998664444444443
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.20 E-value=45 Score=36.19 Aligned_cols=167 Identities=8% Similarity=-0.094 Sum_probs=104.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
++..|..|++-+|-...+|.++-.|..--..+.-++++++.|.. ......+++.+..- ++ +
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~----------~~~k~ai~kIip~w--n~-------d 170 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ----------IGKKNAIEKIIPKW--NA-------D 170 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch----------hhhhhHHHHhcccc--CC-------C
Confidence 66778999999999999999887776443445566677766653 33333344433321 11 1
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh---hcc
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV---EIK 343 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l---~~~ 343 (733)
.+.-.=+.-..+.++.+.|-|++|.+.-+.+.++ +..+.++..-+..++...|++.|+.+.+...= ...
T Consensus 171 ----lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s 242 (491)
T KOG2610|consen 171 ----LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS 242 (491)
T ss_pred ----CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh
Confidence 0111112233477888999999999999999998 56788888999999999999999988865321 000
Q ss_pred C--CchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCC
Q 004720 344 G--IPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 344 ~--~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~ 381 (733)
. ..-+.| -.+-++.+... +.+++.+++-+...+.+.+
T Consensus 243 ~mlasHNyW-H~Al~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 243 WMLASHNYW-HTALFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred hHHHhhhhH-HHHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 0 001112 22333444433 6777777766555554443
No 288
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=84.28 E-value=31 Score=36.65 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhCC-Ch--HHHHHHHHHHHhcCC
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG-LSLIDRAQEYITEAEKLEP-NI--ASAFLKFKIYLQKND 529 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~-l~~~~~A~e~~~~A~~ldp-~~--~t~~~~~ki~l~~gd 529 (733)
+..+.|-..|..|+...+.. -.+|...|.--.. .++.+.|..+|+.+++.-| ++ ...|..|. +..||
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~-------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l--~~~~d 85 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCT-------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL--IKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS--------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH--HHTT-
T ss_pred CChHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHhCc
Confidence 33566666666665432212 1345555554333 4555556666666666555 32 33333333 34466
Q ss_pred HHHHHHHHHHHHhccCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004720 530 QEGAINQILAMTICLDFTT---DFLSLAAHEAVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~---~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
.+.|...+++......... .+...=+..-.+.|+.+.+.+.-+...+.+
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666655443222 233333455555666655555555555533
No 289
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.31 E-value=1.1e+02 Score=36.47 Aligned_cols=363 Identities=14% Similarity=0.102 Sum_probs=181.2
Q ss_pred HHHHHHHHHhhhHHh-ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 129 IKSASFYFKTGVVWH-DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~-~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
.-.+...++.|+..+ ...|++.|...++||+..... .+=.+..+....+ .+.++-..+... |...+++++
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------~~~~d~k~~~~~l--l~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER------HRLTDLKFRCQFL--LARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------cchHHHHHHHHHH--HHHHHHhcCHHH-HHHHHHHHH
Confidence 335677888899988 899999999999999987642 1111111212222 255665655555 999999999
Q ss_pred hhhhcCchhHHHHHHHHHHHhHH-HH-hcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH
Q 004720 208 CLLFGLFEHYKSLANQYLTFAKS-AL-SKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 208 ~l~~~~~~~~~~La~~~~~~G~~-~~-~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y 285 (733)
+.....+...-.- ++.+-+. +. ..+| +..|+..++....+.... ++ ..++.-....-+.++
T Consensus 127 ~~~~~~~~~~w~~---~frll~~~l~~~~~d---~~~Al~~L~~~~~~a~~~-~d----------~~~~v~~~l~~~~l~ 189 (608)
T PF10345_consen 127 EDSETYGHSAWYY---AFRLLKIQLALQHKD---YNAALENLQSIAQLANQR-GD----------PAVFVLASLSEALLH 189 (608)
T ss_pred HHHhccCchhHHH---HHHHHHHHHHHhccc---HHHHHHHHHHHHHHhhhc-CC----------HHHHHHHHHHHHHHH
Confidence 8766533221111 1122211 11 1267 899999999998884421 11 222322333335556
Q ss_pred hccCcHHHHHHHHHHHHc----cCCCCCCCCCc---HH--HHHHHHHHhcCChHHHHHH---HHHhhh-ccCCc------
Q 004720 286 LQKGEYESVIKCVRVLRE----GSFDGGDHHAS---LP--VLAMKAWLGLGRYNEAELE---LRGMVE-IKGIP------ 346 (733)
Q Consensus 286 l~~~~~ekAl~~l~~a~~----~~~~~~~~~p~---~~--~lk~~il~~~g~~deAi~~---l~~~l~-~~~~~------ 346 (733)
+..+..+.+++.++.+.. ..-+... ++. ++ .+.+-+.+..|+++.+... +...+. ....+
T Consensus 190 l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 190 LRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred hcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 666656666655554422 1001112 332 22 4444556666776644443 443331 11111
Q ss_pred hHHHH--hH--------H-HHHHHhchhhhHHHHHHHHHhhhccCCchH-------HHHHHHHHHhhcCCCCCcchHHHH
Q 004720 347 ECIWV--SA--------V-EAYFQAAGTAGAETAKGVFLGLLGRCHVSA-------KAAVRMAHRVAGDEGDGVSEAAVK 408 (733)
Q Consensus 347 ~~~~l--s~--------~-~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~-------~~a~~~l~~~l~~~~sp~~~~~l~ 408 (733)
.+..+ .. . .+.+.=-....+..+-..+..++.-.+... ..+.+.+++... ..++..+..+
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~-~~~~~~~~sl- 346 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKI-KSPSAPSESL- 346 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhc-cCCCCCCcCH-
Confidence 00000 00 0 000000001112222222222111111111 122222222210 0000000000
Q ss_pred HHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHH----HHHHHHHHHHhcCCHHHHHHHHHHhhccC---CCCchhhhhhH
Q 004720 409 LRAKAVAELVSDERVLALFVGDAAAKERIAMHA----VLWNCASILFRSKDYEASAEMFEKSMLYL---PFDVENRILRA 481 (733)
Q Consensus 409 ~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~----llW~~g~~~~k~~~y~~A~~~y~~aL~~~---~~~~~~~~~~a 481 (733)
. .......|... ++...+...+-.++|..|....+..-... |...- ..-..
T Consensus 347 ---------------~------~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~-~~~~~ 404 (608)
T PF10345_consen 347 ---------------S------EASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY-ESLYP 404 (608)
T ss_pred ---------------H------HHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh-hhhhH
Confidence 0 00111223222 33347888899999999999888765432 21110 13567
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHH--------HHHhhCC----ChHHHHHHHHHHHhcCCHHH----HHHHHHHHHh
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYIT--------EAEKLEP----NIASAFLKFKIYLQKNDQEG----AINQILAMTI 542 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~--------~A~~ldp----~~~t~~~~~ki~l~~gd~e~----Al~~l~~~~~ 542 (733)
.+++-.|.++...|+++.|..+|. .+.+.++ .+...++++-|+...+.... +-+.++.+..
T Consensus 405 ~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 405 LLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 889999999999999999999998 4555555 24566677778776554322 4444544444
No 290
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.82 E-value=56 Score=37.22 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=52.4
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004720 443 LWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKF 521 (733)
Q Consensus 443 lW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ 521 (733)
.|+ .|..+..+|+++.|.+.|.++-. +-.+..-|.-.|+-++=.+..+.|..... ....|
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----~n~af 409 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD---------------FSGLLLLYSSTGDREKLSKLAKIAEERGD----INIAF 409 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC---------------ccccHHHHHHhCCHHHHHHHHHHHHHccC----HHHHH
Confidence 677 78999999999999999988633 24556677777777666666655544322 23457
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~ 540 (733)
..++..||.++.++.+..-
T Consensus 410 ~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHc
Confidence 7777788888777666443
No 291
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.59 E-value=69 Score=34.22 Aligned_cols=126 Identities=16% Similarity=0.065 Sum_probs=77.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
..+.-....|++..|...+..+.+..|.+.+ +..-++.+++..|+ .+.|. .++...|.+...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~-------~~~~la~~~l~~g~---~e~A~-------~iL~~lP~~~~~- 200 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSE-------AKLLLAECLLAAGD---VEAAQ-------AILAALPLQAQD- 200 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccch-------HHHHHHHHHHHcCC---hHHHH-------HHHHhCcccchh-
Confidence 3455667889999999999999999888654 45566677778888 66655 343334432210
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
. ++..++.-...+.......+.......+.. ++.++...+.....+...|++++|...+..+|+
T Consensus 201 -~-------~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 201 -K-------AAHGLQAQIELLEQAAATPEIQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred -h-------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 111111111222222222223334444444 456777778888999999999999999888874
No 292
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.28 E-value=5.3 Score=41.66 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 438 AMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP-FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 438 ~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~-~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
-...+.|..|..+|+.|+|+.|+++|+.+...+- .+.- .-...+...+..|+.++|+.+....++-+.
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~--~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWW--SLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3345778899999999999999999999976554 4543 467889999999999999999888877554
No 293
>PRK10941 hypothetical protein; Provisional
Probab=82.24 E-value=10 Score=40.15 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
|.-..+.+.++|+.|+...+..+.+.|.+.. -.|-+|..|.++|.+..|..+++--++..| .+.+...+-.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~-------e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPY-------EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3456788999999999999999999997753 358899999999999999999999999989 78777776666
Q ss_pred HHh
Q 004720 524 YLQ 526 (733)
Q Consensus 524 ~l~ 526 (733)
...
T Consensus 259 ~~l 261 (269)
T PRK10941 259 HSI 261 (269)
T ss_pred HHH
Confidence 543
No 294
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.08 E-value=6.5 Score=45.12 Aligned_cols=91 Identities=10% Similarity=0.068 Sum_probs=78.4
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~ 530 (733)
-+|+-..|+.....|+..-|..... -.-++|...++-+-...|-..+..++.+.. +|.+.|.....++...|.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDV------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcc------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 4678888999999998877744321 257899999999999999999999999988 899999999999999999
Q ss_pred HHHHHHHHHHHhccCCCh
Q 004720 531 EGAINQILAMTICLDFTT 548 (733)
Q Consensus 531 e~Al~~l~~~~~~~~~~~ 548 (733)
++|++.++...+..+..|
T Consensus 693 ~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHHHhcCCCCh
Confidence 999999999998876655
No 295
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.87 E-value=4.6 Score=42.64 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
..-|++..-+..|+..|.+.+|++++++++++|| +-...+.+-.++...||.-.|++.|+.+....
T Consensus 277 ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 277 LYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 3456778889999999999999999999999999 87788888889999999999999999887653
No 296
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.07 E-value=4.4 Score=48.03 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=81.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCChH-HHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--SLIDRAQEYITEAEKLEPNIA-SAFLKFK 522 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--~~~~~A~e~~~~A~~ldp~~~-t~~~~~k 522 (733)
.|+.+|+.++|..|---|..++.+.|.+ +.+.+-+..+.+.||..+ ++|.+++-.++-|+...|.+. +.+-+..
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~---~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKD---HHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheecccc---chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 7999999999999999999999999966 368899999999999876 689999999999999999544 4444566
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
.|--.+..+-|++.+..+....+.+++
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 666667799999997666666454444
No 297
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.68 E-value=3.3 Score=32.42 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
+++.||..+.+.|+|++|.++++.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 6788999999999999999999999985
No 298
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=80.35 E-value=11 Score=47.19 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 128 AIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 128 ~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
....+..+..+|...+-.|.+..|.+ .-+++.+....+..+. ++ .-.-+.+.|..+=..|+.+.|+....|+.
T Consensus 928 ~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h-~~-----~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ 1000 (1236)
T KOG1839|consen 928 TVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLH-PE-----VASKYRSLAKLSNRLGDNQEAIAQQRKAC 1000 (1236)
T ss_pred ccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcc-hh-----HHHHHHHHHHHHhhhcchHHHHHhcccce
Confidence 44677888899999999999998888 7777777764342221 11 22455666888889999999999999988
Q ss_pred hhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 208 CLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 208 ~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
-+..+ ........+..|-++....+..++ ...|...+.++..+..-..+.. -+--+.+..++...+.
T Consensus 1001 ii~eR~~g~ds~~t~~~y~nlal~~f~~~~---~~~al~~~~ra~~l~~Ls~ge~---------hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 1001 IISERVLGKDSPNTKLAYGNLALYEFAVKN---LSGALKSLNRALKLKLLSSGED---------HPPTALSFINLELLLL 1068 (1236)
T ss_pred eeechhccCCCHHHHHHhhHHHHHHHhccC---ccchhhhHHHHHHhhccccCCC---------CCchhhhhhHHHHHHh
Confidence 77654 444455666777788877777777 8899999999998743221111 1112345667777888
Q ss_pred ccCcHHHHHHHHHHHHccC
Q 004720 287 QKGEYESVIKCVRVLREGS 305 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~ 305 (733)
..++++.|+++.+.+.+++
T Consensus 1069 ~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1069 GVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888754
No 299
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.39 E-value=8.5 Score=40.85 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
....+++..++..+...+.++.+++.+++-..+|| +-..+..+...|.+.|+...|+..|+.+.++.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999 77788889999999999999999999999863
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.99 E-value=97 Score=32.69 Aligned_cols=65 Identities=26% Similarity=0.422 Sum_probs=46.7
Q ss_pred HHHHHHHH-hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHH
Q 004720 220 LANQYLTF-AKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCV 298 (733)
Q Consensus 220 La~~~~~~-G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l 298 (733)
+...||+- |. ...+ .++|+.-|++++++-.+ + .+--++++.....+++..++|++-.+.|
T Consensus 28 lENQYYnsK~l---~e~~---p~~Al~sF~kVlelEgE-----K--------geWGFKALKQmiKI~f~l~~~~eMm~~Y 88 (440)
T KOG1464|consen 28 LENQYYNSKGL---KEDE---PKEALSSFQKVLELEGE-----K--------GEWGFKALKQMIKINFRLGNYKEMMERY 88 (440)
T ss_pred hHhhhhccccc---cccC---HHHHHHHHHHHHhcccc-----c--------chhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45567753 32 3445 89999999999998211 1 2233567888899999999999988888
Q ss_pred HHHHc
Q 004720 299 RVLRE 303 (733)
Q Consensus 299 ~~a~~ 303 (733)
..+..
T Consensus 89 ~qlLT 93 (440)
T KOG1464|consen 89 KQLLT 93 (440)
T ss_pred HHHHH
Confidence 77765
No 301
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.09 E-value=34 Score=31.08 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=59.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCc---hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLF---EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~---~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
+|..+++.||+-+|+++.+.......... -.+.....+++..+.. ..+ .+.=..++..+++-..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~---ten---~d~k~~yLl~sve~~s~a~~--- 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK---TEN---PDVKFRYLLGSVECFSRAVE--- 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh---ccC---chHHHHHHHHhHHHHHHHhc---
Confidence 47788999999999999999987766533 3334444555555442 233 22223334444443332210
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+.+.-+..+..||.-+-....|+++..--+..+.
T Consensus 73 -------Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 73 -------LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred -------cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 0112255777788777666778888766555554
No 302
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.42 E-value=3.7 Score=41.93 Aligned_cols=57 Identities=25% Similarity=0.227 Sum_probs=50.1
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
..++.+|++-|.+.|+.+|..-|... .-..+++....+.|+++.|...|.+.+++||
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~-------~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWA-------AGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhh-------hhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45688999999999999999888553 3468899999999999999999999999999
No 303
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.89 E-value=12 Score=31.92 Aligned_cols=72 Identities=10% Similarity=-0.058 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
++++...+..|...+..++-+.|+.+.++|++.... . ...|.+|.+-+.++...|+|...+.+.-+=.+
T Consensus 3 q~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~--------~---~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 3 QDQAKQQIEKGLKLYHQNETQQALQKWRKALEKITD--------R---EDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC--------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999986532 1 12478888889999999999999998877776
Q ss_pred hhh
Q 004720 209 LLF 211 (733)
Q Consensus 209 l~~ 211 (733)
+..
T Consensus 72 ~A~ 74 (80)
T PF10579_consen 72 IAE 74 (80)
T ss_pred HHH
Confidence 654
No 304
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=73.76 E-value=2.3e+02 Score=34.82 Aligned_cols=183 Identities=15% Similarity=0.037 Sum_probs=90.8
Q ss_pred hhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHH
Q 004720 139 GVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYK 218 (733)
Q Consensus 139 G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~ 218 (733)
|-..++.|+.+.|..|++.- +.-.. .++.+ +.++ -.+|-++|++++|.++|+|+..-.|. . +
T Consensus 50 aLsl~r~gk~~ea~~~Le~~-------~~~~~--~D~~t--Lq~l---~~~y~d~~~~d~~~~~Ye~~~~~~P~-e---e 111 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEAL-------YGLKG--TDDLT--LQFL---QNVYRDLGKLDEAVHLYERANQKYPS-E---E 111 (932)
T ss_pred HHHHHHhcCchhHHHHHhhh-------ccCCC--CchHH--HHHH---HHHHHHHhhhhHHHHHHHHHHhhCCc-H---H
Confidence 45566788888888777321 11111 12222 2222 56677999999999999999988876 1 1
Q ss_pred HHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc------HH
Q 004720 219 SLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE------YE 292 (733)
Q Consensus 219 ~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~------~e 292 (733)
+ ++..=+++..-++ |.+--+.=-+-|+.+.+. .-.-|.+...+.+.-..-+. .-
T Consensus 112 -l---l~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~-------------~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 112 -L---LYHLFMAYVREKS---YKKQQKAALQLYKNFPKR-------------AYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred -H---HHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcc-------------cchHHHHHHHHHHhccCCcccccchhHH
Confidence 1 2222233334444 433222111222221111 11123333333333222221 11
Q ss_pred HHHHHHHHHHccCCCCCCCCCcH-HHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH--HHhHHHHHHHhch
Q 004720 293 SVIKCVRVLREGSFDGGDHHASL-PVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI--WVSAVEAYFQAAG 362 (733)
Q Consensus 293 kAl~~l~~a~~~~~~~~~~~p~~-~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~--~ls~~~ly~~~~~ 362 (733)
=|.+.++...+.. |+..... .++...|+...|.+++|...+...+.+...+.+. -...++++...++
T Consensus 172 LA~~m~~~~l~~~---gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 172 LAEKMVQKLLEKK---GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred HHHHHHHHHhccC---CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 1334455554421 2332222 2788888999999999999986555333322222 2245555554444
No 305
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=73.36 E-value=1e+02 Score=34.31 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CC-ChHHHHHHHHHHHh---cCCHHHHHHHHHH-HHhccCCChH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL----EP-NIASAFLKFKIYLQ---KNDQEGAINQILA-MTICLDFTTD 549 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l----dp-~~~t~~~~~ki~l~---~gd~e~Al~~l~~-~~~~~~~~~~ 549 (733)
..+.+..++-++|-..++||.=++.++....+ -+ .+..++..+...-+ .||.++|++.+.. +.+....+||
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34567789999999999999999999987776 22 45556666666677 8999999999988 6666667899
Q ss_pred HHHHHHHHHHH
Q 004720 550 FLSLAAHEAVA 560 (733)
Q Consensus 550 lL~la~~~a~~ 560 (733)
++.++..+-..
T Consensus 219 ~~gL~GRIyKD 229 (374)
T PF13281_consen 219 TLGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHHH
Confidence 99999876654
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.20 E-value=34 Score=33.25 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh---HHHHHH
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT---DFLSLA 554 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~---~lL~la 554 (733)
-..+..+..+-+..++.+.+...+.-.-.+.| .+...+....+++..|++++|+..++.+.......| -++.+|
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34567778888999999999999998888899 788888899999999999999999999988877666 355554
No 307
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.73 E-value=76 Score=32.56 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 486 VLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 486 ~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
....-.++-+.+++|+.....-.+-.| +..++..+|+++...|++++|..+++......+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 344567788999999999999999999 999999999999999999999999999888764
No 308
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.64 E-value=30 Score=37.53 Aligned_cols=117 Identities=12% Similarity=-0.020 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch--HHHHHHHH--------HH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI--ASAFLKFK--------IY 524 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~--~t~~~~~k--------i~ 524 (733)
.+.-+..|++||+..|. ..++...+-.++.+..+-++..+-.++++..+| ++ -..|+.|. +.
T Consensus 47 ~E~klsilerAL~~np~-------~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~ 119 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-------SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVS 119 (321)
T ss_pred HHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHH
Confidence 35567789999987663 346777778888899999999999999999998 44 23344443 33
Q ss_pred HhcCCHHHHHHHHHHHHhcc-CC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 525 LQKNDQEGAINQILAMTICL-DF----------TTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~-~~----------~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
...+.+.++++.+....... .. -..++.-++....++|-.+.|+..++.+++..-
T Consensus 120 ~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 120 DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44556666666666655443 00 112555566788889999999999999999643
No 309
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.90 E-value=50 Score=28.70 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 501 QEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 501 ~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
++.++++++.+| ++...|-++..++..|++++|++.+-.+..-.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456777888999 89999999999999999999999988887663
No 310
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.70 E-value=27 Score=37.76 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=69.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHh
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQ 526 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~ 526 (733)
..+|-.|+-..-...+++.+.+-..+. |-..-+.-..+.|....|-|++|.+..++|++++| +--......-|.-.
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dl---p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem 221 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADL---PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM 221 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCC---cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence 456777887777777777655422221 45566677888999999999999999999999999 77888888888888
Q ss_pred cCCHHHHHHHHHH
Q 004720 527 KNDQEGAINQILA 539 (733)
Q Consensus 527 ~gd~e~Al~~l~~ 539 (733)
+|.+.++++.+.+
T Consensus 222 ~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 222 NGRHKEGKEFMYK 234 (491)
T ss_pred cchhhhHHHHHHh
Confidence 9999999876644
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.55 E-value=1.1e+02 Score=35.87 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHh----h-CC-ChHHHHHHHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-----SLIDRAQEYITEAEK----L-EP-NIASAFLKFK 522 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-----~~~~~A~e~~~~A~~----l-dp-~~~t~~~~~k 522 (733)
++-..|.+||+.+-.. .....+.+++.||..- ++.++|+++++.|.+ . .. ++..++.+.+
T Consensus 226 ~~~~~a~~~~~~~a~~---------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 226 GELSEAFKYYREAAKL---------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGR 296 (552)
T ss_pred hhhhHHHHHHHHHHhh---------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHH
Confidence 3567888999987542 3456678899999877 699999999999755 1 12 5566777888
Q ss_pred HHHhc----C-CHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 004720 523 IYLQK----N-DQEGAINQILAMTICLDFTTDFLSLAAHEAVACQA-LSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIV 596 (733)
Q Consensus 523 i~l~~----g-d~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~-~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li 596 (733)
+|.+. . |.+.|+..+........ |+-....+. +...|. ..-...|++....... ..++.+.+|..+
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~-~~~~g~~~~d~~~A~~yy~~Aa~-----~G~~~A~~~la~ 368 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGV-LYETGTKERDYRRAFEYYSLAAK-----AGHILAIYRLAL 368 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHH-HHHcCCccccHHHHHHHHHHHHH-----cCChHHHHHHHH
Confidence 88874 3 78889999988877643 442233222 223333 1223344444333111 245667777666
Q ss_pred HHHHh--hcCChhHHHHHHHHHHHHh
Q 004720 597 TILTQ--ETGNESEVLKYMKRAHART 620 (733)
Q Consensus 597 ~l~~~--~~~~~~~~l~~~~~A~~~l 620 (733)
.+..- .+.+......++++|.++-
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 66532 3456777888999988753
No 312
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=71.39 E-value=59 Score=29.06 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHh
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQA--LSVAVAALSNLLN 576 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~--~~~a~~aL~~Ll~ 576 (733)
...+-|...+|.++|++++..+..- ++.+++...++..+.+.++ .+.+...|..|.+
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~-~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~ 65 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLP-EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQ 65 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 3455567789999999999988654 6888999999998888642 3334555566665
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.99 E-value=97 Score=32.69 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=79.3
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCC--hHHHH---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISD--SDERK---LLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~--~~e~~---~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..|.|+.|++.|.|.. ...++..+..++... +++.. .++.++......|-.+.+..+-...|++++.+
T Consensus 148 NtKLgkl~fd~~e~~k-------l~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTK-------LQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHI 220 (440)
T ss_pred cchHhhhheeHHHHHH-------HHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHh
Confidence 3456777776666554 443333322222211 21211 26788877777888898888888899999988
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHH--HHHHhc
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFI--SAIHLQ 287 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~L--a~~yl~ 287 (733)
..+-|.. ..+..+.-.=|+-++..|. +++|-.-|=+|+.--.+ .| ++.|..++..| |+-+++
T Consensus 221 KSAIPHP-lImGvIRECGGKMHlreg~---fe~AhTDFFEAFKNYDE--------sG----spRRttCLKYLVLANMLmk 284 (440)
T KOG1464|consen 221 KSAIPHP-LIMGVIRECGGKMHLREGE---FEKAHTDFFEAFKNYDE--------SG----SPRRTTCLKYLVLANMLMK 284 (440)
T ss_pred hccCCch-HHHhHHHHcCCccccccch---HHHHHhHHHHHHhcccc--------cC----CcchhHHHHHHHHHHHHHH
Confidence 7765532 2233333334788999999 99998877777663221 12 44465566554 444555
Q ss_pred cC
Q 004720 288 KG 289 (733)
Q Consensus 288 ~~ 289 (733)
.|
T Consensus 285 S~ 286 (440)
T KOG1464|consen 285 SG 286 (440)
T ss_pred cC
Confidence 54
No 314
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=68.12 E-value=1.3e+02 Score=34.17 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
-+|-..-+++++++|.+.|.+.-.-...++. .-.-.++-++..-..-+++++.-...+.+-.+..| ++...+.++-+
T Consensus 11 ~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f--~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 11 FQGFILQKQKKFQESEKIFSKIYDEKESSPF--LLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHhhcchH--HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 4899999999999999999987543222211 23335667777666678888988888888888888 88888889999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCC-C------------hH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 524 YLQKNDQEGAINQILAMTICLDF-T------------TD--FLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~-~------------~~--lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
+-+++.+.+|++.+....+-.+. . +| +=.+.++--++.|.....+..|+.+...
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999999877765321 1 12 2234566667789999988888777764
No 315
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=67.92 E-value=8.7 Score=27.88 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
|.+|-.+|-+-+..++|+.|++.|.+++.+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356778888888888899999998888776
No 316
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=66.97 E-value=46 Score=35.08 Aligned_cols=77 Identities=13% Similarity=-0.060 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
.-.+++.+|+=..|..-++++.|..+.++.+.++| ++.-.--+.-||.+.|-+.-|++.++.+...-+.+|....+-
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 46788899999999999999999999999999999 787778899999999999999999999776666677644443
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.83 E-value=1.5e+02 Score=29.52 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHH-HHHHhcCChHHHHHHHHHhhhccCCc
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLPVLAM-KAWLGLGRYNEAELELRGMVEIKGIP 346 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~-~il~~~g~~deAi~~l~~~l~~~~~~ 346 (733)
+.-++|+..+..+++. +.+.-|....+++ -++...|+-.+|+..+..+-...+.|
T Consensus 72 ~k~d~Alaaf~~lekt---g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 72 NKTDDALAAFTDLEKT---GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred CCchHHHHHHHHHHhc---CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 3456788888888873 3556677654444 46667799999999987665443344
No 318
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.99 E-value=40 Score=40.09 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--hHHHH----HHHHHHHhcC
Q 004720 455 DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN--IASAF----LKFKIYLQKN 528 (733)
Q Consensus 455 ~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~--~~t~~----~~~ki~l~~g 528 (733)
.-+.|++||++|.+..|..... .+.|.+++.-+.-+.+..++..----++..+----+ ....| ..|.+-+..+
T Consensus 302 s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAn 380 (1226)
T KOG4279|consen 302 SLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLAN 380 (1226)
T ss_pred hHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhcc
Confidence 3456899999999988865432 566766665544333332222111111111000001 11111 2356677889
Q ss_pred CHHHHHHHHHHHHhccC
Q 004720 529 DQEGAINQILAMTICLD 545 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~ 545 (733)
|+.+|+++-+.|-++.+
T Consensus 381 d~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 381 DYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred CHHHHHHHHHHHhccCC
Confidence 99999999999888853
No 319
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.91 E-value=84 Score=35.02 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=87.4
Q ss_pred HHHHccCHHHHHHHHHHHHhhhhc--CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 189 TAWEVLEQNLAITLLNRAKCLLFG--LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 189 ~a~~~g~~~~A~~~~~rA~~l~~~--~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
.+|...+...|....++...-... +.-..+..-+.+-.+|--|..-|+ ...|++.|.++-++|...+
T Consensus 116 ~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~---l~~Alr~YsR~RdYCTs~k-------- 184 (466)
T KOG0686|consen 116 EKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQ---LDNALRCYSRARDYCTSAK-------- 184 (466)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhcc---HHHHHhhhhhhhhhhcchH--------
Confidence 556666666666666655432221 222334555677788999999999 9999999999999988642
Q ss_pred hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC---CCC-CCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 267 TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF---DGG-DHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~---~~~-~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
-....+.++..+-+..++|.....+++.+...+- ++. ...+...-..+-+.+..++|..|.+++...
T Consensus 185 ------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 185 ------HVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred ------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1234677788888888889888888888877420 000 112223345555566667888887776543
No 320
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.60 E-value=67 Score=33.40 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcH
Q 004720 195 EQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLK 274 (733)
Q Consensus 195 ~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~ 274 (733)
.....+.++++|........ .......+...+|..++..|+ +++|+++|+.+.....+. + =..+.
T Consensus 153 hs~~iI~lL~~A~~~f~~~~-~~R~~~~l~~~~A~ey~~~g~---~~~A~~~l~~~~~~yr~e--------g---W~~l~ 217 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYG-QNRMASYLSLEMAEEYFRLGD---YDKALKLLEPAASSYRRE--------G---WWSLL 217 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHhC--------C---cHHHH
Confidence 33456667777776543211 134455667799999999999 999999999996654432 1 12344
Q ss_pred HHHHHHHHHHHhccCcHHHHHHH
Q 004720 275 FKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 275 ~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
..++..|..|+...|+.+..+.+
T Consensus 218 ~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 218 TEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH
Confidence 56888899999999987776654
No 321
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.83 E-value=19 Score=40.30 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=51.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhhhc--CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 185 ARSRTAWEVLEQNLAITLLNRAKCLLFG--LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 185 ~rA~~a~~~g~~~~A~~~~~rA~~l~~~--~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
...++.+-.|||..|+..++-..- ... ..+...--..++|.+|-+++-.+. |.+|++.|...+-.+.+..
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl-~~~~l~~~V~~~~is~~YyvGFaylMlrR---Y~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDL-NKKGLYTKVPACHISTYYYVGFAYLMLRR---YADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCc-ccchhhccCcchheehHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 336788889999999988765431 111 112223344578999999999999 9999999999999887765
No 322
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=63.53 E-value=27 Score=43.98 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=95.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.-.+....+.+|.+.+|.+ ..++..+..+ ....+..++..|-.+.+.+...++ +++|+.|-.+|.-+.+...+-.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d---~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD---NQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc---hHHHHHhcccceeeechhccCC
Confidence 3344566677888999999 7777776553 333445566777777888888899 9999999888888755432211
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH--HHHHHHHH-hcCChHHHHHHHH
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP--VLAMKAWL-GLGRYNEAELELR 337 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~--~lk~~il~-~~g~~deAi~~l~ 337 (733)
.+.....+.+++...+..++...|+..+..+.+... --++.||.+. +..++.++ ..++++.|++.+.
T Consensus 1011 ---------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1011 ---------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred ---------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 222344677778777777777777777666665332 1145788876 44444443 3478888888876
Q ss_pred Hhh
Q 004720 338 GMV 340 (733)
Q Consensus 338 ~~l 340 (733)
...
T Consensus 1082 ~A~ 1084 (1236)
T KOG1839|consen 1082 SAL 1084 (1236)
T ss_pred HHH
Confidence 544
No 323
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.32 E-value=12 Score=27.17 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.7
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEK 256 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~ 256 (733)
++|..+|-.-+...+ |++|+.-|++++++.++
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHH
Confidence 467778888889999 99999999999999554
No 324
>PF13041 PPR_2: PPR repeat family
Probab=62.00 E-value=28 Score=26.10 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCChHHHHHHHH
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKL--EPNIASAFLKFK 522 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~l--dp~~~t~~~~~k 522 (733)
.|..+..+|.+.|++++|.++++++.+. .|+..|.-.+.+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4666777788888888888888877654 356655544443
No 325
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=61.42 E-value=2.9e+02 Score=31.46 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=19.6
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVS 163 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~ 163 (733)
.|=..-+.++++.|.+.|+|-.+-.+
T Consensus 12 Qgf~Lqkq~~~~esEkifskI~~e~~ 37 (549)
T PF07079_consen 12 QGFILQKQKKFQESEKIFSKIYDEKE 37 (549)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 35555578899999999999886544
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.90 E-value=15 Score=26.26 Aligned_cols=26 Identities=12% Similarity=0.177 Sum_probs=19.5
Q ss_pred HHHHHHhcCCHHHHHHHHH--HhhccCC
Q 004720 446 CASILFRSKDYEASAEMFE--KSMLYLP 471 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~--~aL~~~~ 471 (733)
.|..++.+|+|++|++.|. .+-.+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 6888999999999999944 6544443
No 327
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.46 E-value=15 Score=39.18 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=52.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
|.-.-.+|+.++|...++.|..++|++|. ++..+|...-..++ .-+|-.+|-+|+-+ .|++.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~-------~L~e~G~f~E~~~~---iv~ADq~Y~~ALti---sP~ns 184 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQ-------ILIEMGQFREMHNE---IVEADQCYVKALTI---SPGNS 184 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHH-------HHHHHhHHHHhhhh---hHhhhhhhheeeee---CCCch
Confidence 33444889999999999999999999985 58899987766677 99999999999999 76554
No 328
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=57.73 E-value=77 Score=34.46 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=68.5
Q ss_pred hcCCHHHHHHHHHHhhc-cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-------CCChHHHHH--HH
Q 004720 452 RSKDYEASAEMFEKSML-YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-------EPNIASAFL--KF 521 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~-~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-------dp~~~t~~~--~~ 521 (733)
..+|.++|+++.+.... +...++. --...+....+.|++..|+++++++.+.+.... .|++++.|+ .+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 44589999999998764 3333321 246788889999999999999999999887552 236777776 58
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
+.|-..||+..+-.+.-....|.+
T Consensus 165 qYyk~~~d~a~yYr~~L~YL~~~d 188 (380)
T KOG2908|consen 165 QYYKKIGDFASYYRHALLYLGCSD 188 (380)
T ss_pred HHHHHHHhHHHHHHHHHHHhcccc
Confidence 888889999887776666666653
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=56.75 E-value=3.2e+02 Score=34.72 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=18.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
-+...+.+++.++|..|..+..|=.
T Consensus 680 VLa~vr~~l~~~~y~~AF~~~RkhR 704 (1265)
T KOG1920|consen 680 VLAKVRTLLDRLRYKEAFEVMRKHR 704 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3355677888889999988766643
No 330
>PF12854 PPR_1: PPR repeat
Probab=56.61 E-value=18 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
-.|.-+..+|-+.|++++|.+.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3566666666666666666666654
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=56.49 E-value=41 Score=35.81 Aligned_cols=64 Identities=23% Similarity=0.207 Sum_probs=53.3
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+...+++..++..+..++.+|.+++.++.+... .+.+-..+...+++|++.|+...|+..+..+
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 345678999999999999999999999888874 3455567788899999999999999998754
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.39 E-value=1.9e+02 Score=27.82 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh---HHHHHH
Q 004720 482 KSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT---DFLSLA 554 (733)
Q Consensus 482 kl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~---~lL~la 554 (733)
........+.+...+++.+...+...--+-| .+.....-.-+++..|++++|++.+..+.......| .++..|
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3456677788889999999999998888889 778888899999999999999999999988776556 444444
No 333
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.21 E-value=34 Score=37.98 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=65.7
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc-h
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF-E 215 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~-~ 215 (733)
..|--|+++|+++.|.+||.+|=+++.. ... .+....+-..++.-.||+-.-..+.++|..-..++. -
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---------~kh--vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTS---------AKH--VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcc---------hHH--HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 4688899999999999999998888742 111 133444445677778888888888888876421111 0
Q ss_pred hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHH
Q 004720 216 HYKSLANQYLTFAKSALSKNETNSLNDALKLMNE 249 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~ 249 (733)
.....+.+.-.-|.+.+..++ |..|+++|-.
T Consensus 224 ~q~v~~kl~C~agLa~L~lkk---yk~aa~~fL~ 254 (466)
T KOG0686|consen 224 AQEVPAKLKCAAGLANLLLKK---YKSAAKYFLL 254 (466)
T ss_pred HHhcCcchHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 112223345556888888888 8888765543
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=55.57 E-value=59 Score=30.76 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHh-hCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 482 KSFRVLCLCYLGLSL---IDRAQEYITEAEK-LEP--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 482 kl~r~la~cyl~l~~---~~~A~e~~~~A~~-ldp--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
..+++++.|.++..+ ..+.+.++++.++ -+| .-.+.|+++--+-+.++++++++++..+..-.+++++.+.|
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 456778888877754 4556667777665 334 24566777777778888888888888887776666664443
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.84 E-value=92 Score=32.22 Aligned_cols=55 Identities=15% Similarity=-0.026 Sum_probs=49.5
Q ss_pred HHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 491 YLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 491 yl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
..+.++.+.|.|.|++|+.+-| -..+.|.......+.|+++.|.+.|++..++.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 3467899999999999999999 788899999999999999999999999998854
No 336
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.62 E-value=7.5e+02 Score=34.07 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhc-cCCC-CchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHH
Q 004720 456 YEASAEMFEKSML-YLPF-DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGA 533 (733)
Q Consensus 456 y~~A~~~y~~aL~-~~~~-~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~A 533 (733)
..+-+--++.++. ..-. +. ....++++...|...-+.|+++.|..++-+|.+..+ +....-.+|..-++||...|
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~--~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNL--KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL-PEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccc--cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-chHHHHHHHHHHhhccHHHH
Confidence 4455555566653 2111 32 257899999999999999999999999999977763 44555689999999999999
Q ss_pred HHHHHHHHhcc
Q 004720 534 INQILAMTICL 544 (733)
Q Consensus 534 l~~l~~~~~~~ 544 (733)
+..++...+..
T Consensus 1722 l~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1722 LSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhh
Confidence 99999888544
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=54.39 E-value=17 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYIT 505 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~ 505 (733)
...+++..|...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35666777777777777766654
No 338
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=53.87 E-value=24 Score=36.79 Aligned_cols=45 Identities=22% Similarity=0.078 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 199 AITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 199 A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
|..+|.+|..+.|..+. .|+++|..+...++ .-+|+.||-+|+-.
T Consensus 1 A~~~Y~~A~~l~P~~G~-------p~nQLAvl~~~~~~---~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN-------PYNQLAVLASYQGD---DLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSH-------HHHHHHHHHHHTT----HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCC-------cccchhhhhccccc---hHHHHHHHHHHHhc
Confidence 78899999999998764 38899998889999 99999999999943
No 339
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=53.82 E-value=1.1e+02 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=23.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFD 473 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~ 473 (733)
.+..+|..||+-.|++..+......+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~ 29 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED 29 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC
Confidence 4677899999999999999998777655
No 340
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.80 E-value=23 Score=23.56 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+|..+..+|.+.|++++|.+.++.+..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466778888899999999999888876
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.05 E-value=65 Score=32.53 Aligned_cols=56 Identities=18% Similarity=0.078 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-----ChHHHHHHHHHHHhcCCHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-----NIASAFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-----~~~t~~~~~ki~l~~gd~e~Al 534 (733)
.+.+.+++.+|..|. ..+.+||+..+.+++.+.+ ++.....+..++.++|+++.|-
T Consensus 138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 466889999999999 6789999999999998832 5666777899999999998773
No 342
>PF13041 PPR_2: PPR repeat family
Probab=52.60 E-value=50 Score=24.72 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 512 PNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 512 p~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
|++.+.-.+-..+.+.|+.++|.+.++.|.+. +..||.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~ 38 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDS 38 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCH
Confidence 45666777888999999999999999999975 446663
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.29 E-value=37 Score=38.69 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=56.3
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCC
Q 004720 450 LFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKND 529 (733)
Q Consensus 450 ~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd 529 (733)
+.-.|||+++.+.....--+ |.-+ .+...+.+....+.|..+.|.+..+.- -.+|.++++.|+
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~------~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIP------KDQGQSIARFLEKKGYPELALQFVTDP----------DHRFELALQLGN 333 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--------HHHHHHHHHHHHHTT-HHHHHHHSS-H----------HHHHHHHHHCT-
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCC------hhHHHHHHHHHHHCCCHHHHHhhcCCh----------HHHhHHHHhcCC
Confidence 34567888877777533221 2111 122455666667777777777666422 245888888888
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004720 530 QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNL 574 (733)
Q Consensus 530 ~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~L 574 (733)
.+.|.+..+.+ + ++..-..-+..|..+|+.++|..++++.
T Consensus 334 L~~A~~~a~~~----~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 334 LDIALEIAKEL----D-DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHCCCC----S-THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHhc----C-cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 88888644221 2 4544444457888888888888777543
No 344
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=52.14 E-value=22 Score=23.23 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 484 FRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 484 ~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
|..+..+|.+.|++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 56677788888888888888877654
No 345
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.01 E-value=46 Score=31.48 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHhhc-cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 454 KDYEASAEMFEKSML-YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~-~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.+.++-+..++..+. -.| ..+-.+.+.++..|.++|+|++++.+++..++.+| |.-
T Consensus 49 ~dv~~GI~iLe~l~~~~~~------~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHP------ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHhHHHHHHHhhhcCc------ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 445667777887775 223 23446788899999999999999999999999988 443
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=51.71 E-value=20 Score=23.21 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q 004720 316 PVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 316 ~~lk~~il~~~g~~deAi~~ 335 (733)
.+..+.++...|++++|...
T Consensus 4 ~~~la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 34444445555555554444
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.35 E-value=1.6e+02 Score=33.61 Aligned_cols=166 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSN 573 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~ 573 (733)
|++-.|-.-+..+++-.| .|.-..+...|..+.|++|.|.+.+....+........+..-..--.+.+..++|..--+.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Q ss_pred HHhhhcCCCCCchhHHHHHHHHHHHH---HhhcCChhHHHHHHHHHHHHhhh--cccCccCCCccccchhhHHHHhhhhh
Q 004720 574 LLNFYTSGKPMPTKEVVVLRTIVTIL---TQETGNESEVLKYMKRAHARTSE--IGANCFFGTEEAGRREQNWLAVMSWN 648 (733)
Q Consensus 574 Ll~~~~~~~~~~~~~~~~lR~li~l~---~~~~~~~~~~l~~~~~A~~~l~~--~~~~~~~~~~~~~~~E~~Wf~~~awN 648 (733)
++.--.++ |. +++.. .+..+-.|+.+-+.++.+.+-++ .|.-+|. +...-.++.+-|+-. |.
T Consensus 383 ~l~~eie~---~e--------i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~-~~~~~~~~~~~~~~~-~~ 449 (831)
T PRK15180 383 MLSNEIED---EE--------VLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL-SSTQYFNDGNAFSEA-FH 449 (831)
T ss_pred HhccccCC---hh--------heeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee-ccceeccCcchHHHH-HH
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHc
Q 004720 649 FGTNCGKEKKYELCMEFLRLASEFYG 674 (733)
Q Consensus 649 ~a~~~~~~~~~~~~~~f~~la~~~~~ 674 (733)
.|++.... .-.-|..-+.++++|++
T Consensus 450 ~~~~~~~~-~~~~~~~~~~~~~~~~~ 474 (831)
T PRK15180 450 AGIQSQRL-NDTFMETALSLAIKFSD 474 (831)
T ss_pred hhhhhhhh-hHHHHHHHHHHHHhccH
No 348
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.70 E-value=28 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 484 FRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 484 ~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
|..+..+|.+.|++++|.+++.++.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45666777777777777777777654
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.51 E-value=25 Score=26.37 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
..+|..|+..|+++.|++.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777653
No 350
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.42 E-value=1.4e+02 Score=37.47 Aligned_cols=129 Identities=19% Similarity=0.077 Sum_probs=81.3
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHH------HHh-h--------ccCCC-hHHHHHHHHHHHHHHHHHHHccCHHHHHH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVS------KLD-I--------SRISD-SDERKLLLDINIARSRTAWEVLEQNLAIT 201 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~------~~~-~--------~~~~~-~~e~~~~l~~l~~rA~~a~~~g~~~~A~~ 201 (733)
.|..++..|...+|..||.+|..... ++- . .++.+ .++.+ .+.||.--.+..=.-|-.+.++.
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t-~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELT-ALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHH-HHHHHHHHHHHHHHhccHHHHHH
Confidence 58899999999999999999986432 111 1 11111 22222 24455444455556677778888
Q ss_pred HHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHH
Q 004720 202 LLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFI 281 (733)
Q Consensus 202 ~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~L 281 (733)
...+|+.-.|.. .+.++.++.++=+-++..|. + -+||..+-.++. ++.|-.++|.|
T Consensus 1005 lA~~AIe~l~dd---~ps~a~~~t~vFnhhldlgh---~-------~qAy~ai~~npd-----------serrrdcLRql 1060 (1480)
T KOG4521|consen 1005 LAVKAIENLPDD---NPSVALISTTVFNHHLDLGH---W-------FQAYKAILRNPD-----------SERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHhCCCc---chhHHHHHHHHHHhhhchhh---H-------HHHHHHHHcCCc-----------HHHHHHHHHHH
Confidence 888887655542 23455566666666777777 4 455565554441 44566789999
Q ss_pred HHHHhccCcH
Q 004720 282 SAIHLQKGEY 291 (733)
Q Consensus 282 a~~yl~~~~~ 291 (733)
.-+.++.|..
T Consensus 1061 vivLfecg~l 1070 (1480)
T KOG4521|consen 1061 VIVLFECGEL 1070 (1480)
T ss_pred HHHHHhccch
Confidence 9999888743
No 351
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.02 E-value=3.9e+02 Score=29.50 Aligned_cols=67 Identities=10% Similarity=-0.007 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-CchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF-DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~-~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
..+-..+|.......+.|-|..|++|++.-+.++|. |+- =+..-+=...++.++|+==++.++....
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~------g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL------GVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc------hhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 344556777888889999999999999999999987 421 2344455677888999988888887544
No 352
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=49.98 E-value=87 Score=29.12 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=56.8
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+..+|...++.++ +-.++-.|++|+.+.++-. ........+.--++.-...+||.-+-..|+-+-.++|++.+-+
T Consensus 4 htllAd~a~~~~~---~l~si~hYQqAls~se~~~--~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEAD---PLRSILHYQQALSLSEEID--ESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhccc---HHHHHHHHHHHHHHHHHhc--ccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456777788888 9999999999999866531 1111222222334455678899999999988888999887765
Q ss_pred cCCCCCCCCCc
Q 004720 304 GSFDGGDHHAS 314 (733)
Q Consensus 304 ~~~~~~~~~p~ 314 (733)
...++-++.|.
T Consensus 79 ~VltLiPQCp~ 89 (140)
T PF10952_consen 79 KVLTLIPQCPN 89 (140)
T ss_pred HHHHhccCCCC
Confidence 21122344444
No 353
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.66 E-value=6.4e+02 Score=31.85 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=51.1
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
-+|+.+......||.+.|+|+|++-|.... ...|...++.-.+ .+ -++|.+.+...++....+...++ -
T Consensus 478 YlrAnvp~KVi~cfAE~Gqf~KiilY~kKv--------GyTPdymflLq~l-~r-~sPD~~~qFa~~l~Q~~~~~~di-e 546 (1666)
T KOG0985|consen 478 YLRANVPAKVIQCFAETGQFKKIILYAKKV--------GYTPDYMFLLQQL-KR-SSPDQALQFAMMLVQDEEPLADI-E 546 (1666)
T ss_pred HHHcCCcHHHHHHHHHhcchhHHHHHHHHc--------CCCccHHHHHHHH-Hc-cChhHHHHHHHHhhccCCCcccH-H
Confidence 345666667778899999999998776655 2456644433322 22 67788888887777544433333 3
Q ss_pred hHHHHHHHhch
Q 004720 352 SAVEAYFQAAG 362 (733)
Q Consensus 352 s~~~ly~~~~~ 362 (733)
.+.+++++.+.
T Consensus 547 ~I~DlFme~N~ 557 (1666)
T KOG0985|consen 547 QIVDLFMELNL 557 (1666)
T ss_pred HHHHHHHHHHh
Confidence 45677776654
No 354
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.18 E-value=1.4e+02 Score=28.45 Aligned_cols=50 Identities=16% Similarity=0.021 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHH
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKS 230 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~ 230 (733)
+-++.+|..+...|+++-|.++++.+...+|.+.....-.+++|-.+|..
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 56677889999999999999999999999999888888888888888773
No 355
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=48.72 E-value=2.7e+02 Score=30.46 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 004720 107 LRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIAR 186 (733)
Q Consensus 107 ~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~r 186 (733)
++-.=-.+..+.+-.+| ...+.++....+- .++.+.|..++++-++-+... .+......+....
T Consensus 58 l~lY~NFvsefe~kINp-----lslvei~l~~~~~---~~D~~~al~~Le~i~~~~~~~--------~e~~av~~~~t~~ 121 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINP-----LSLVEILLVVSEQ---ISDKDEALEFLEKIIEKLKEY--------KEPDAVIYILTEI 121 (380)
T ss_pred HHHHHHHHHHHhhccCh-----HHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHhh--------ccchhHHHHHHHH
Confidence 33333334444444444 3444444444433 237788888888887654320 1111123455566
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
+++.+..||.+.+...+...+......+......+..||..+..|++.... |+. +|..++.++.
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d--~a~---yYr~~L~YL~ 185 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGD--FAS---YYRHALLYLG 185 (380)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHh--HHH---HHHHHHHHhc
Confidence 889999999999999999998876555555566778899888887776431 433 4566666544
No 356
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.52 E-value=1.2e+02 Score=26.96 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=44.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQAL--SVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVT 597 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~--~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~ 597 (733)
...=|...||.++|+.+++.+..- ...+.++...+..+.+.++. +.+...+..|.+. +.-...++...+.-++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~---~~~~~~~~~~gf~~~l~ 83 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKR---KLISKEQFQEGFEDLLE 83 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHT---TSS-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHh
Confidence 344566678999999999887443 66778888888888886332 2234445555542 22224445555554444
Q ss_pred HHH
Q 004720 598 ILT 600 (733)
Q Consensus 598 l~~ 600 (733)
.+.
T Consensus 84 ~l~ 86 (113)
T PF02847_consen 84 SLE 86 (113)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 357
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=48.02 E-value=35 Score=28.85 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
..|..+-+.|+|++|+.+|..|++.
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3788888999999999999999863
No 358
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.82 E-value=4.4e+02 Score=29.37 Aligned_cols=65 Identities=28% Similarity=0.326 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhh
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG--LSLIDRAQEYITEAEKL 510 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~--l~~~~~A~e~~~~A~~l 510 (733)
..-|..+...|..++|..|.++|.....-.|... . -..+..++.+|.. .-++.+|.+.++.....
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~----~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGRE----E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh----h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999876434221 1 4677888877765 57899999999877654
No 359
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.55 E-value=62 Score=34.71 Aligned_cols=67 Identities=10% Similarity=-0.123 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
+--+.|.=.-+.|+.++|...++-|++++| ++....-+..+....++.-+|=+||-+.....+.+.+
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 334455555677999999999999999999 8887777777777778999999999888777665554
No 360
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=47.38 E-value=4.6e+02 Score=31.75 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 290 EYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 290 ~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+....+..++.+-. +...| .+.++-.++|+.+|+|++|+.+....
T Consensus 38 EIsd~l~~IE~lye-----d~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~a 85 (929)
T KOG2062|consen 38 EISDSLPKIESLYE-----DETFPERQLAALLASKVYYYLGEYEDALEYALRA 85 (929)
T ss_pred HhhhhHHHHHHHhc-----cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445666666654 33444 45588899999999999999997654
No 361
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=46.26 E-value=34 Score=28.87 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK 164 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~ 164 (733)
..+..+.+.+..+=+.|++..|+.||++|++.+-.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45566677778888999999999999999998764
No 362
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=46.03 E-value=38 Score=22.61 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+|..+..++...|+++.|...++.+++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567778888888999999988888876
No 363
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=45.76 E-value=2e+02 Score=32.48 Aligned_cols=140 Identities=15% Similarity=0.081 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
...++..-|+++++-|.-..+..+.-++........-.+ ..+..-.+.+..++..|. .+.|...+..++..+--+.
T Consensus 312 ~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldy-l~a~~~L~LAl~~L~LG~---pk~Al~lLh~a~h~Il~~G 387 (482)
T KOG4322|consen 312 LHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDY-LEANENLDLALEHLALGS---PKAALPLLHTAVHLILVQG 387 (482)
T ss_pred HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccch-hhhhchHHHHHHHHHcCC---hHHHHHHHHhhhhHHHhcc
Confidence 345777779999988888888887666665433211001 123334456666777787 8999999999988644321
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhcc------CcHHHHHHHHHHHHccCCCCCCC--CCcHHHHHHHHHHhcCChH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQK------GEYESVIKCVRVLREGSFDGGDH--HASLPVLAMKAWLGLGRYN 330 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~------~~~ekAl~~l~~a~~~~~~~~~~--~p~~~~lk~~il~~~g~~d 330 (733)
+ -+.|+++....++|++.- .++|.++..++.+..+.-.++-. --++.|+.+..+-..|+.+
T Consensus 388 g-----------L~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~ 456 (482)
T KOG4322|consen 388 G-----------LDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSP 456 (482)
T ss_pred c-----------hhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCch
Confidence 0 122344455556665443 36777888888777654111110 1234477777888888776
Q ss_pred HHH
Q 004720 331 EAE 333 (733)
Q Consensus 331 eAi 333 (733)
+--
T Consensus 457 eRn 459 (482)
T KOG4322|consen 457 ERN 459 (482)
T ss_pred HHH
Confidence 533
No 364
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=44.82 E-value=59 Score=32.84 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTEL 270 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~ 270 (733)
|..-.-+.|..-+-++..- |.. .-+.+.+.++.-|. +.| .++|+.+|-+++++...+ ....
T Consensus 117 Wsr~~d~~A~~~fL~~E~~-~~l-----~t~elq~aLAtyY~-krD---~~Kt~~ll~~~L~l~~~~---~~~n------ 177 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGT-PEL-----ETAELQYALATYYT-KRD---PEKTIQLLLRALELSNPD---DNFN------ 177 (203)
T ss_pred hhccCcHHHHHHHHHHcCC-CCC-----CCHHHHHHHHHHHH-ccC---HHHHHHHHHHHHHhcCCC---CCCC------
Confidence 5554445555544444321 111 12345666666555 455 699999999999994433 1111
Q ss_pred hhcHHHHHHHHHHHHhccCcHHHH
Q 004720 271 KGLKFKTLRFISAIHLQKGEYESV 294 (733)
Q Consensus 271 ~el~~~~l~~La~~yl~~~~~ekA 294 (733)
..++..|+.+|...++++.|
T Consensus 178 ----~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 178 ----PEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ----HHHHHHHHHHHHHhcchhhh
Confidence 23888999999999999887
No 365
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.52 E-value=3.7e+02 Score=36.71 Aligned_cols=111 Identities=18% Similarity=0.242 Sum_probs=65.9
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC--
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL-- 213 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~-- 213 (733)
.++|+.|+..-+...=..+|++|-.++=.+...| .-.+...+|...|.+|+...|+-.+++........
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 3468888877776666677777766543211111 12577788999999999999999999999775432
Q ss_pred ------chhHHHH--HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Q 004720 214 ------FEHYKSL--ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEK 256 (733)
Q Consensus 214 ------~~~~~~L--a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~ 256 (733)
|.....+ ..+.+-+|+-.-..++.. -.+-.+.|+.+.++.++
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~-s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFE-SKDILKYYHDAKAILPE 1787 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHccc
Confidence 2221111 112333333222223311 45557778888887443
No 366
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.31 E-value=69 Score=38.23 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=36.0
Q ss_pred HccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHH--hHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 192 EVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTF--AKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~--G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+-||..+|+...-.+.+.... .|+.+.-..++|-.+ ...+-..+ +.+.|++||.+|++.
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~---s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAE---SLNHAIEWYRKAFEV 316 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchh---hHHHHHHHHHHHhcc
Confidence 457778888876666665433 666544444444322 11111222 378999999999998
No 367
>PF12854 PPR_1: PPR repeat
Probab=44.03 E-value=34 Score=23.75 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004720 519 LKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
.+-..+.+.|+.++|++.++.|
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC
Confidence 3556778899999999999876
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.82 E-value=31 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 517 AFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 517 ~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
.+.+++.|+..||.+.|.+.++.+..-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 567899999999999999999998853
No 369
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.95 E-value=21 Score=30.11 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
++|...-+.|+|++|+++|..|++.+
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 37777789999999999999999744
No 370
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.35 E-value=3.6e+02 Score=26.88 Aligned_cols=134 Identities=16% Similarity=0.069 Sum_probs=79.3
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
..|+.++|+.-+....+ +....|+.|+ ....|.....+|+ -..|+..|..+-.- .+. |.
T Consensus 70 ~~~k~d~Alaaf~~lek---tg~g~YpvLA--~mr~at~~a~kgd---ta~AV~aFdeia~d---t~~-----P~----- 128 (221)
T COG4649 70 QENKTDDALAAFTDLEK---TGYGSYPVLA--RMRAATLLAQKGD---TAAAVAAFDEIAAD---TSI-----PQ----- 128 (221)
T ss_pred HcCCchHHHHHHHHHHh---cCCCcchHHH--HHHHHHHHhhccc---HHHHHHHHHHHhcc---CCC-----cc-----
Confidence 45677777766654432 2223344444 4567888889999 89999888765443 211 11
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
..|--....-+..+++.|.|+....-++-+-. ++++...+.---.+-.-++.|++.+|...+..++.....|.++
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHhhhccC---CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 01100111124445778899998876665543 1122222332444556678899999999999887766666666
No 371
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=41.44 E-value=6.9e+02 Score=29.86 Aligned_cols=28 Identities=4% Similarity=0.069 Sum_probs=22.8
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHH
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKAT 159 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~ 159 (733)
...+.++++.|.+.|.-..|.+.|+..-
T Consensus 645 ~gKF~EAAklFk~~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 645 QGKFHEAAKLFKRSGHENRALEMYTDLR 672 (1081)
T ss_pred hhhHHHHHHHHHHcCchhhHHHHHHHHH
Confidence 3567789999999999999988887553
No 372
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.14 E-value=1.2e+02 Score=25.50 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
..|...-+.|+|++|..+|..+++.
T Consensus 11 ~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 11 RLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3677777889999999999999864
No 373
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.39 E-value=55 Score=27.62 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=18.0
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhc
Q 004720 233 SKNETNSLNDALKLMNEALELCEK 256 (733)
Q Consensus 233 ~~~~~~~~e~A~~~l~~Alel~~~ 256 (733)
..|+ |++|..+|.+|++.+-.
T Consensus 18 ~~gn---y~eA~~lY~~ale~~~~ 38 (75)
T cd02680 18 EKGN---AEEAIELYTEAVELCIN 38 (75)
T ss_pred Hhhh---HHHHHHHHHHHHHHHHH
Confidence 4566 99999999999998765
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.20 E-value=5.6e+02 Score=28.48 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
........+..+..++.++|..|...|+....-++ +... +..-..++++=-+|...+|..|...+++...
T Consensus 128 ~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~---------~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 128 EVFGDREWRRAKELFNRYDYGAAARILEELLRRLP---------GREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------chhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33445667788889999999999999988776432 1111 2122344667789999999999999998775
No 375
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=40.08 E-value=39 Score=21.96 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=21.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
+|..+..+|.+.|++++|.+.++.+.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 466778888899999999988887765
No 376
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=39.99 E-value=1.5e+02 Score=23.99 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK 164 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~ 164 (733)
.+....+.|..+=+.|+++.|+.+|.+|++.+-.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3455566677777799999999999999998764
No 377
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=39.64 E-value=1.2e+02 Score=25.67 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=27.2
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
.|..|...++.+-+.|+ +++|+.+|+++++++-+-
T Consensus 5 ~A~~~a~~AVe~D~~gr---~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 5 MARKYAINAVKAEKEGN---AEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHH
Confidence 44556666667778888 999999999999986653
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.48 E-value=4.7e+02 Score=27.39 Aligned_cols=134 Identities=15% Similarity=0.085 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhh-----CC--C
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID-RAQEYITEAEKL-----EP--N 513 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~-~A~e~~~~A~~l-----dp--~ 513 (733)
+++.-+...++.|++.-|.+...+-++.+..... +.......+++.+......-+ .=...+++|++- .| +
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~--~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSED--PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 6667778889999999999888877665432211 111222345666666554322 233455555443 23 6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHH----------------HhccCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 514 IASAFLKFKIYLQKNDQEGAINQILAM----------------TICLDFTTD-FLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 514 ~~t~~~~~ki~l~~gd~e~Al~~l~~~----------------~~~~~~~~~-lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+.-+...+..+.+.|++.+|..++-.- ....+..+| ++.-++--....+|...|..++...++
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 777888888888888888887655111 111122333 444444444556677777766665555
Q ss_pred h
Q 004720 577 F 577 (733)
Q Consensus 577 ~ 577 (733)
.
T Consensus 170 ~ 170 (260)
T PF04190_consen 170 K 170 (260)
T ss_dssp H
T ss_pred H
Confidence 4
No 379
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.64 E-value=1.9e+02 Score=24.66 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=20.7
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
+.+.|..+-..|+ .++|+.+|++++..+.++
T Consensus 11 ~I~kaL~~dE~g~---~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 11 EISKALRADEWGD---KEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHhhhhhcCC---HHHHHHHHHHHHHHHHHH
Confidence 3333333334566 788888888888887765
No 380
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=38.13 E-value=66 Score=21.37 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
.|..+..++.+.|+++.|.++++++.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466677788888888888888877654
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=38.11 E-value=1.2e+02 Score=32.60 Aligned_cols=65 Identities=23% Similarity=0.077 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
.++++.-.|..|...|.+.+|+.+.+|+..++|-.....+.+-. .+...|| --.+.+.|++--+.
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~-------~la~~gD---~is~~khyerya~v 342 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMA-------SLATLGD---EISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHH-------HHHHhcc---chhhhhHHHHHHHH
Confidence 44677777999999999999999999999999864443333333 4445555 34445555544443
No 382
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.04 E-value=4.7e+02 Score=26.98 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcc-----CCCCchhhhhhHHHHHHHH-HHHHhCCCHHHHHHHHHHHHh
Q 004720 457 EASAEMFEKSMLY-----LPFDVENRILRAKSFRVLC-LCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 457 ~~A~~~y~~aL~~-----~~~~~~~~~~~akl~r~la-~cyl~l~~~~~A~e~~~~A~~ 509 (733)
+.|.+.|+.|+.+ .|.+ |.+-.+.-|.+ ..|--+|+.++|++..++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~----p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTH----PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTS----HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5566666666532 2333 34444444444 455667888888887776643
No 383
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=37.66 E-value=4e+02 Score=25.98 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=49.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
.+..+..+-+..++.+.+...+..++-. .+..|...++.+.++...|++++|+..++.+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvL----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVL----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 5556666667778888888888877764 4677778899999999999999999999987543
No 384
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.15 E-value=3.2e+02 Score=28.27 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=66.4
Q ss_pred HccCHHHHHHHHHHHHhhhhcCch-----hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFE-----HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREE 266 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~-----~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~ 266 (733)
..|+++.|+....-|+.-....|+ ....+++-...-+...+..|.+ ++-+ ++.....+...-.++
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~--~e~~--~~~~~~~l~~~~dmp------ 164 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGES--VEPY--FLRVFLDLTTEWDMP------ 164 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCC--CChH--HHHHHHHHHhcCCCC------
Confidence 789999999999999987544443 2234555566666666777763 3322 244444443221111
Q ss_pred hhhhhhcHHHHHHHHHHHHh---------ccCcHHHHHHHHHHHHcc
Q 004720 267 TTELKGLKFKTLRFISAIHL---------QKGEYESVIKCVRVLREG 304 (733)
Q Consensus 267 ~~~~~el~~~~l~~La~~yl---------~~~~~ekAl~~l~~a~~~ 304 (733)
.+++++.+..+|..++ ..++...|+.+++.+.+.
T Consensus 165 ----d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 165 ----DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred ----hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 4578999999999885 445788999999999885
No 385
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.77 E-value=71 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
..|...-+.|+|++|+.+|..|++.+
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 47888889999999999999998643
No 386
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=36.60 E-value=69 Score=26.52 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 446 CASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
.|...-+.|+|++|+++|..|++.
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677777889999999999998863
No 387
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.59 E-value=6e+02 Score=27.74 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CC-Ch---
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYL-PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--EP-NI--- 514 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~-~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--dp-~~--- 514 (733)
+-...+..|.+.++|..|.....-.-..- +.-.. -.-+..++.+++..|++.++..+|..+.+++.-+ +. |.
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d-~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYD-VEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhh-hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 34458899999999999987665431111 11111 1245566889999999999999999999997433 22 32
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004720 515 -ASAFLKFKIYLQKNDQEGAINQILAMT 541 (733)
Q Consensus 515 -~t~~~~~ki~l~~gd~e~Al~~l~~~~ 541 (733)
.....-+++...++.+=+|.++|-.+.
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345677777888888888776554
No 388
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.52 E-value=1.2e+02 Score=31.97 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=58.2
Q ss_pred hhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh-hccCCchHH
Q 004720 271 KGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV-EIKGIPECI 349 (733)
Q Consensus 271 ~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l-~~~~~~~~~ 349 (733)
.++..+.++++=.+|+..++++.|..+.+.+... ++.+|.-.-=++-+|.+.|.+.-|+..+..-+ .+++.+...
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l----~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDL----NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh----CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 3445567888888899999999999999999886 46777666667889999999999999988766 444444433
No 389
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=35.30 E-value=4.4e+02 Score=33.11 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=67.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC----C---CHHHHHHHHHHHHhhCC-ChHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL----S---LIDRAQEYITEAEKLEP-NIASAF 518 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l----~---~~~~A~e~~~~A~~ldp-~~~t~~ 518 (733)
.+.....+.|+.|+..|+..-.-+|.-.+. -..+++.|...+.. | .+++|..-|++- .-.| -|.-++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 556 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEG----YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYL 556 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccc----hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHH
Confidence 456678899999999999977666633221 23566667666543 2 355554444421 1134 677778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
-.+-+|-+.|++++-++||.-..+--+.+|.+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 89999999999999999998877666666753
No 390
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=34.75 E-value=1e+02 Score=25.78 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
.+|...-+.|+|++|+.+|..+++.+
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 37778889999999999999999643
No 391
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.53 E-value=1.4e+02 Score=33.25 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC--cHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG--EYESVI 295 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~--~~ekAl 295 (733)
......-....+.++++.+ |..|...|++...- ..... ..-+...+..|+.+|..|+ +|++|.
T Consensus 127 ~v~~~~e~~~~r~l~n~~d---y~aA~~~~~~L~~r---~l~~~---------~~~~~~~~~~l~~~y~~WD~fd~~~A~ 191 (380)
T TIGR02710 127 NVEGNTEQGYARRAINAFD---YLFAHARLETLLRR---LLSAV---------NHTFYEAMIKLTRAYLHWDRFEHEEAL 191 (380)
T ss_pred HHHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhc---ccChh---------hhhHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3344445556778899999 99999999888765 21110 1235668999999999999 788999
Q ss_pred HHHHH
Q 004720 296 KCVRV 300 (733)
Q Consensus 296 ~~l~~ 300 (733)
++++.
T Consensus 192 ~~L~~ 196 (380)
T TIGR02710 192 DYLND 196 (380)
T ss_pred HHHhh
Confidence 88874
No 392
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.14 E-value=8.1e+02 Score=28.55 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL-IDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~-~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+|.++-.-|+-..|..+|...++-+.....++=-..-.++-+|.-|..++. +++|.+++.+|-.-.. +-+-.-+-++|
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRLh~rI 534 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRLHMRI 534 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHHHHHH
Confidence 788888888999999999988743321111111233467889999999988 9999999998876653 33333333444
Q ss_pred H
Q 004720 524 Y 524 (733)
Q Consensus 524 ~ 524 (733)
.
T Consensus 535 q 535 (546)
T KOG3783|consen 535 Q 535 (546)
T ss_pred H
Confidence 3
No 393
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.03 E-value=93 Score=26.28 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=22.8
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEK 256 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~ 256 (733)
+...++..-+.|+ |++|+++|+.|++.+-.
T Consensus 9 ~a~~Ave~D~~g~---y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGR---YSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccC---HHHHHHHHHHHHHHHHH
Confidence 4444555557788 99999999999998654
No 394
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=33.77 E-value=3.2e+02 Score=25.90 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCC----------c--ccchhhh--hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccC
Q 004720 240 LNDALKLMNEALELCEKGLGE----------A--RTREETT--ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGS 305 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~----------~--~~~~~~~--~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~ 305 (733)
.-.|.+|..+.+.-+...... . ......+ ...+.+..-.+.||..|++.++|++|..+++-
T Consensus 25 L~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD~kEy~RaA~~L~~----- 99 (142)
T PF04049_consen 25 LYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFDCKEYDRAAHVLKD----- 99 (142)
T ss_pred HHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHcc-----
Confidence 578889999888765521110 0 0000000 00112333566799999999999999976653
Q ss_pred CCCCCCCCcHHHHHHHHHHhcCChH
Q 004720 306 FDGGDHHASLPVLAMKAWLGLGRYN 330 (733)
Q Consensus 306 ~~~~~~~p~~~~lk~~il~~~g~~d 330 (733)
..+|...||++-..+-.|+-.
T Consensus 100 ----~~s~~~~FL~lYs~YLa~EKr 120 (142)
T PF04049_consen 100 ----CKSPKALFLRLYSRYLAGEKR 120 (142)
T ss_pred ----CCCchHHHHHHHHHHHHHHHH
Confidence 357788898887777666543
No 395
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=33.76 E-value=84 Score=29.89 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLC 488 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la 488 (733)
..+..++..|+|..|++.....+...|.+.+.+.-++.+++.++
T Consensus 75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 75 ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 37888999999999999999999988877544444444444433
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.73 E-value=7.1e+02 Score=27.48 Aligned_cols=95 Identities=12% Similarity=-0.050 Sum_probs=63.5
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHh---h-----ccCCC--------hHHHHHHHHHHHHHHHHHHHccCHHH
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLD---I-----SRISD--------SDERKLLLDINIARSRTAWEVLEQNL 198 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~---~-----~~~~~--------~~e~~~~l~~l~~rA~~a~~~g~~~~ 198 (733)
-+..+..+...|+...|..+.++|+=..+... + +...+ .+.+. ++..+........+.|-+.-
T Consensus 43 Llqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~-fflal~r~i~~L~~RG~~rT 121 (360)
T PF04910_consen 43 LLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQ-FFLALFRYIQSLGRRGCWRT 121 (360)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchH-HHHHHHHHHHHHHhcCcHHH
Confidence 35667777888899999999999986665211 1 11111 12333 35555566778889999999
Q ss_pred HHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCC
Q 004720 199 AITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNE 236 (733)
Q Consensus 199 A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~ 236 (733)
|.+.+.-...++|. +|-+ +++-+---.++.++
T Consensus 122 AlE~~KlLlsLdp~~DP~g------~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 122 ALEWCKLLLSLDPDEDPLG------VLLFIDYYALRSRQ 154 (360)
T ss_pred HHHHHHHHHhcCCCCCcch------hHHHHHHHHHhcCC
Confidence 99999999999998 7754 23334333445566
No 397
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.18 E-value=1.3e+02 Score=35.33 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.6
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHH
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVS 163 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~ 163 (733)
....+.|...+..|++.+|.+||.+|.++..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~ 697 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGS 697 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhh
Confidence 4567899999999999999999999998755
No 398
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.76 E-value=1.8e+02 Score=26.09 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCC
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND 529 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd 529 (733)
-....+...+.-|++.+|.+...++.+..+ .+.+++..++.+...||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 334445555666777777777777766655 34455556666666665
No 399
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=31.41 E-value=88 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhhCCChHHHH
Q 004720 495 SLIDRAQEYITEAEKLEPNIASAF 518 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp~~~t~~ 518 (733)
+++|+|..+|++.+.+.|++.+-.
T Consensus 1 kE~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred ChHHHHHHHHHHHHHhCCCchHHH
Confidence 478999999999999988665543
No 400
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=31.18 E-value=1.8e+02 Score=24.43 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=17.9
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 233 SKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 233 ~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
..|+ |++|..+|.++++.+-..
T Consensus 18 ~~g~---y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 18 QRGD---AAAALSLYCSALQYFVPA 39 (75)
T ss_pred Hhcc---HHHHHHHHHHHHHHHHHH
Confidence 5566 999999999999986653
No 401
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.12 E-value=5.1e+02 Score=28.93 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=47.9
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
..-....+..++.++|..|...|+.+...... ++....+.+-..++++=.+|..-+|++|...+++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-------~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLS-------AVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-------hhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 44455677899999999999999888865321 1222223334556778889999999999999983
No 402
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=31.07 E-value=9.2e+02 Score=28.27 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcC
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS---LIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKN 528 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~---~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~g 528 (733)
-++|.+.|+.+..-.. ....-+|+.++..--... ++++..+++++.+.+.. + +.++|..| ..+..
T Consensus 309 t~e~~~~yEr~I~~l~------~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~--irR~e 380 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLL------KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNF--IRRAE 380 (656)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHH--HHHhh
Confidence 5778888888764221 133455666665433333 48888999999877643 3 33444333 33455
Q ss_pred CHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 529 DQEGAINQILAMTICLDFTTD-FLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~~~~~-lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
-...|...+++.-+..-..-+ ++..|..+....++..+|.+.|+.=+..+..+
T Consensus 381 GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~ 434 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDS 434 (656)
T ss_pred hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Confidence 566777777666655432224 55555666666888999999998888766555
No 403
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.07 E-value=8.6e+02 Score=30.64 Aligned_cols=69 Identities=9% Similarity=0.069 Sum_probs=42.1
Q ss_pred HHHHhccCcHHHHHHHHHHHHccCCC-CCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHH
Q 004720 282 SAIHLQKGEYESVIKCVRVLREGSFD-GGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 282 a~~yl~~~~~ekAl~~l~~a~~~~~~-~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
..-+++.++|.+|..+.+.-+- +.+ .-+.+|...+-.+..+...=.--+-+..+...+.+.|.+...|-
T Consensus 701 ir~~Ld~~~Y~~Af~~~RkhRI-dlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~ 770 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKHRI-DLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYK 770 (928)
T ss_pred HHHHHhhccHHHHHHHHHHhcc-ccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccc
Confidence 3356788899999988766543 111 13556766666666666553333456666666676666666653
No 404
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=30.39 E-value=3.6e+02 Score=23.69 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=43.2
Q ss_pred HHhhcCCCCCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHcc
Q 004720 115 LSLAADVSGIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVL 194 (733)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g 194 (733)
+.-|+. .|.|...+..+..++..+..- ...+ .|-..|..|-+.+. +|..++..|
T Consensus 6 ~agCa~-~~~~~~~l~~A~~ai~~A~~~-~a~~--~Ap~el~~A~~~L~----------------------~A~~a~~~~ 59 (103)
T PF14346_consen 6 LAGCAS-APVPNEELSDAEAAIQRAEAA-GAEQ--YAPVELKEAREKLQ----------------------RAKAALDDG 59 (103)
T ss_pred HHHcCC-CCCCHHHHHHHHHHHHHHHHc-CCcc--ccHHHHHHHHHHHH----------------------HHHHHHHcC
Confidence 333433 344566666677776666654 3333 34556666655543 367788889
Q ss_pred CHHHHHHHHHHHHhh
Q 004720 195 EQNLAITLLNRAKCL 209 (733)
Q Consensus 195 ~~~~A~~~~~rA~~l 209 (733)
++..|..+..++...
T Consensus 60 ~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 60 DYERARRLAEQAQAD 74 (103)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988888855
No 405
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.29 E-value=1.1e+03 Score=29.02 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK 164 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~ 164 (733)
.....+.+.|.-++..|+++.|...|=+++..++.
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 34567789999999999999999999999987764
No 406
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=30.16 E-value=1.6e+02 Score=23.87 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 224 YLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 224 ~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
+.+.|...-..|+ +++|+.+|.+|++.+...
T Consensus 8 ~~~~Av~~D~~g~---~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 8 LIKKAVEADEAGN---YEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHH
Confidence 4445555557788 999999999999986653
No 407
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=29.68 E-value=2.6e+02 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhh---CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 486 VLCLCYLGLSLIDRAQEYITEAEKL---EP--NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 486 ~la~cyl~l~~~~~A~e~~~~A~~l---dp--~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
..+......+++..|-..+++|=-+ +| +..++..|++...+.+|..|++-++-.+
T Consensus 14 ~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H~~ML~~a~r~rd~rEv~GQ~~Rl 73 (112)
T PF12487_consen 14 EAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVHWAMLRFALRQRDRREVLGQLLRL 73 (112)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3445566679999999999987333 45 5677889999999999999998877544
No 408
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=29.06 E-value=4.2e+02 Score=25.58 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhcc
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIK 343 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~ 343 (733)
.+..+..+-+..++.+.+...++.++-. .+..|..-.+-+-++...|++++|+..++......
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvL----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVL----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4445555566678888888888777764 35666677999999999999999999999876543
No 409
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.86 E-value=1.2e+02 Score=33.29 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHH
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDAL 244 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~ 244 (733)
+.-++...+-++.+++++.|..-|+.|..+... ....+......+|..|+.++..++ .+..+
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~---~e~~V 103 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAK---EESQV 103 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence 455556667788999999999999999998765 556678889999999999999988 66655
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.31 E-value=2.8e+02 Score=24.06 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=39.8
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C--hHHHHHHHHHHHhcCC
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N--IASAFLKFKIYLQKND 529 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~--~~t~~~~~ki~l~~gd 529 (733)
-++..+.-.|.| ....+.++.+++.-|+++.|.+.+-+..+.+| . -...-.+..+.-..|.
T Consensus 10 al~~~~a~~P~D-------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 10 ALEAALAANPDD-------LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHSTT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344455555544 35679999999999999999999999999987 2 3344444444444444
No 411
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.09 E-value=1.5e+02 Score=25.19 Aligned_cols=60 Identities=10% Similarity=-0.188 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE-P--NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld-p--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
+.|.-+.+.|+++-..|+.+.|+.+|+++++.- . .+.+. .......++.|.+...+|.+-
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-----~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVP-----SAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC-----cccccHHHHHHHHHHHHHHHH
Confidence 344555555666666677777777777765541 0 11111 233444567777777777653
No 412
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=27.74 E-value=3.6e+02 Score=28.17 Aligned_cols=82 Identities=20% Similarity=0.122 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHh
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDRAQEYITEAEKLEP-N-IASAFLKFKIYLQ 526 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~ 526 (733)
.+++.+|++||..+.. ......+++++..|.. -.++.+|...|.+|-+..- . ..+.+.+...|..
T Consensus 90 ~~~~~~A~~~~~~~a~---------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~ 160 (292)
T COG0790 90 SRDKTKAADWYRCAAA---------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS 160 (292)
T ss_pred cccHHHHHHHHHHHhh---------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Q ss_pred cC-------CHHHHHHHHHHHHhc
Q 004720 527 KN-------DQEGAINQILAMTIC 543 (733)
Q Consensus 527 ~g-------d~e~Al~~l~~~~~~ 543 (733)
-+ +...|+..|......
T Consensus 161 g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 161 GLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred ChhhhcccHHHHhHHHHHHHHHHh
No 413
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=27.65 E-value=1.6e+02 Score=20.97 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH--HHHhhCC
Q 004720 484 FRVLCLCYLGLSLIDRAQEYIT--EAEKLEP 512 (733)
Q Consensus 484 ~r~la~cyl~l~~~~~A~e~~~--~A~~ldp 512 (733)
...+|.++...|++++|++.++ -+-.++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4667888889999999999944 6666655
No 414
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.41 E-value=6.5e+02 Score=28.64 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 217 YKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 217 ~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
...++..++..|+..++++. |++|+-.|-.|=+.+...
T Consensus 159 Almmglg~hekaRa~m~re~---y~eAl~~LleADe~F~~C 196 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREM---YSEALLVLLEADESFSLC 196 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHhh
Confidence 45678889999999999999 999999998888876653
No 415
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=27.18 E-value=3.3e+02 Score=21.89 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEY 503 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~ 503 (733)
|..|..+|..|+|=+|=+..+..-.-.+.+.. ..-.+-++..-+..+.+.|+.+-|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~-~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPER-DFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHH-HHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchH-HHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45788899999999999999998765554432 234455555566677778888877654
No 416
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=77 Score=34.68 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=79.1
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc-ccchh-hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA-RTREE-TTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~-~~~~~-~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
...-+.|...+++++ |.+|..-+.++.......+.+. .-.+. .+...+.+..+.++++.+-+..+.+..|+..-.
T Consensus 223 ~~~k~~~~~~~kk~~---~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~ 299 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQR---YREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN 299 (372)
T ss_pred hhhhccchhhhhhcc---HhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence 344466777888899 9999999999999866411111 10111 233467788899999999999999888885543
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
.+... +......+|-+...+....++++|++++.....
T Consensus 300 ~~~~~----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 300 EALRD----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred ccccc----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 33321 234445668888899999999999999876653
No 417
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=26.92 E-value=1.4e+03 Score=28.91 Aligned_cols=118 Identities=16% Similarity=0.104 Sum_probs=77.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh
Q 004720 188 RTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET 267 (733)
Q Consensus 188 ~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~ 267 (733)
-+.++...|+.|+..|.|+..--|+-.++++ +.+..|...+.+-+. ..--..|.+|+.-+++-.+.. +
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~- 550 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYE----AQFRLGITLLEKASE---QGDPRDFTQALSEFSYLHGGV----G- 550 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchH----HHHHhhHHHHHHHHh---cCChHHHHHHHHHHHHhcCCC----C-
Confidence 3455777888888888888876665444444 577888887776441 111156777777666532221 1
Q ss_pred hhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC
Q 004720 268 TELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG 327 (733)
Q Consensus 268 ~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g 327 (733)
.++. +..-|.+|-..|+|++=++|+..+.+- .++||-...++=.+.+++-
T Consensus 551 ---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 551 ---APLE---YLGKALVYQRLGEYNEEIKSLLLALKR----YSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred ---CchH---HHhHHHHHHHhhhHHHHHHHHHHHHHh----cCCCCccHHHHHHHHHHHH
Confidence 1111 222355677889999999999999985 4799998888777776663
No 418
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=26.61 E-value=5.9e+02 Score=26.35 Aligned_cols=34 Identities=3% Similarity=-0.086 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRV 486 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~ 486 (733)
..++...|+.+++.|+.++|.-.. ..+..++.+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GV-K~~i~~l~~~ 223 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGV-KKDIERLERR 223 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHH
Confidence 567889999999999999885322 2345555544
No 419
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.53 E-value=3.9e+02 Score=27.60 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=57.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHH-HHHHHHHHHhCCCHHHHHHHHHHH--Hhh--CC--ChHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKS-FRVLCLCYLGLSLIDRAQEYITEA--EKL--EP--NIASAFL 519 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl-~r~la~cyl~l~~~~~A~e~~~~A--~~l--dp--~~~t~~~ 519 (733)
-..|+-...|.+|.+-|..-..+.|+.. +...+ -|+...-.+..|+.+.|++.++.- ..+ |+ ..+-+..
T Consensus 33 Vmnylv~eg~~EaA~~Fa~e~~i~~~~~----d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q 108 (228)
T KOG2659|consen 33 VMNYLVHEGYVEAAEKFAKESGIKPPSI----DLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQL 108 (228)
T ss_pred HHHHHHhccHHHHHHHhccccCCCCccC----chhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHH
Confidence 4456778889999999998777665221 12222 244445558999999999988742 222 22 2344445
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 004720 520 KFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~ 539 (733)
.+-=.++.|..++|+++.++
T Consensus 109 ~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 109 HLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 55556678888888887643
No 420
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.47 E-value=2e+02 Score=25.71 Aligned_cols=45 Identities=22% Similarity=-0.014 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQA 563 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~ 563 (733)
...-+.+..||++.|.+...+..+..+..+=-..++++-|++.|+
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 345677889999999999999988766433233345677777664
No 421
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.31 E-value=2.2e+02 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=20.9
Q ss_pred HhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 227 FAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 227 ~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
-+...-..|+ |++|+.+|.++++.+...
T Consensus 12 ~Ave~D~~g~---y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 12 RAVELDQEGR---FQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHhcc---HHHHHHHHHHHHHHHHHH
Confidence 3344446677 999999999999986653
No 422
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=25.83 E-value=8.2e+02 Score=31.75 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHc
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~ 303 (733)
-.++..++.+++.+ ...+.. ..-+..++..+|.+|-..|...|+--++..+..
T Consensus 421 ~~eI~~~l~~~~~~---~l~~l~--------~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 421 RSEIAEFLFKAFPL---QLKDLS--------VEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred HHHHHHHHHHhhhh---hhhhCC--------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 67888999999987 321121 123567999999999999988887767666655
No 423
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.71 E-value=5.6e+02 Score=29.08 Aligned_cols=125 Identities=18% Similarity=0.006 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHH----HHhhccCCChHHHHH-HHH----HHHHH---------
Q 004720 125 PSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVS----KLDISRISDSDERKL-LLD----INIAR--------- 186 (733)
Q Consensus 125 ~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~----~~~~~~~~~~~e~~~-~l~----~l~~r--------- 186 (733)
+..+.-....+...|+++++...|+.|.-|+-.|=++.. ++.. . -+.-++ .+| |++.+
T Consensus 156 E~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe-~---VDNyallnLDIVWCYfrLknitcL~DAe 231 (568)
T KOG2561|consen 156 EQKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLE-L---VDNYALLNLDIVWCYFRLKNITCLPDAE 231 (568)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHH-h---hcchhhhhcchhheehhhcccccCChHH
Confidence 344454557777899999999999999999977776533 1110 0 000000 111 11111
Q ss_pred HHHHHHccCHHHHHH-HHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 187 SRTAWEVLEQNLAIT-LLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 187 A~~a~~~g~~~~A~~-~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
-+.......|..+.. .++|...+... .|+ ..-.-+++.--|+..+.+|. -++|...|+.|-..+.+-
T Consensus 232 ~RL~ra~kgf~~syGenl~Rl~~lKg~~spE-raL~lRL~LLQGV~~yHqg~---~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 232 VRLVRARKGFERSYGENLSRLRSLKGGQSPE-RALILRLELLQGVVAYHQGQ---RDEAYEALESAHAKLLEL 300 (568)
T ss_pred HHHHHHHHhhhhhhhhhhHhhhhccCCCChh-HHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHe
Confidence 111112222222222 24444444333 443 23333445556999999999 799999998888765543
No 424
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.65 E-value=1.9e+02 Score=19.80 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q 004720 240 LNDALKLMNEALEL 253 (733)
Q Consensus 240 ~e~A~~~l~~Alel 253 (733)
+++|.+||++|-+.
T Consensus 24 ~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 24 YEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHc
Confidence 89999999999774
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=25.53 E-value=61 Score=30.56 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHhhccCCCCCC-----CccchHHHHHHHHHHh
Q 004720 18 HDRLLAQLDSLIKQTENRSHTNPE-----TLTTLASDIKQILTQL 57 (733)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 57 (733)
|..++.||+.++.+||.+-..||. ...++...|.+++.+.
T Consensus 5 Hp~f~~ql~~L~~~Ve~l~~~dP~~y~~~~~~KlLaai~~li~e~ 49 (140)
T PF11663_consen 5 HPLFLEQLEALIAAVERLRAKDPEGYRKKPNTKLLAAISKLIFEV 49 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHhcChHhhhhchHHHHHHHHHHHHHhh
Confidence 788999999999999999888752 3467788888888554
No 426
>PHA02564 V virion protein; Provisional
Probab=25.45 E-value=1.8e+02 Score=27.63 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=36.6
Q ss_pred HHHHHHHHHccccCCchhhhHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 004720 665 FLRLASEFYGIRVDGQVEENSITVCKSLILTVSAMIASENQKQIALMNNEVKQALELL 722 (733)
Q Consensus 665 f~~la~~~~~l~p~~~~~~~~~~~c~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (733)
...-..+-...-|++..+......+ . |+. ||+.-|.+ +.|-++++|.+|+.++
T Consensus 87 Yi~~Vs~~~GV~~~~~idl~d~~l~-~-l~~--Aii~~EnG-~~pys~~~i~~~~~~~ 139 (141)
T PHA02564 87 YATAVANAMGVPPQAGLHLDQDTLA-A-LVT--AIIRHENG-QQPYSAEQIAQGVREV 139 (141)
T ss_pred HHHHHHHHHCCCCCCcCcCCcHHHH-H-HHH--HHHHHhcC-CCCCCHHHHHHHHHHh
Confidence 3333444455666666666655333 2 555 99999999 6788999999999875
No 427
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=25.12 E-value=1.2e+02 Score=20.39 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=19.6
Q ss_pred HHHHHhHHHHhc----CCCCCHHHHHHHHHHHHHH
Q 004720 223 QYLTFAKSALSK----NETNSLNDALKLMNEALEL 253 (733)
Q Consensus 223 ~~~~~G~~~~~~----~~~~~~e~A~~~l~~Alel 253 (733)
.++++|..++.- .| .++|..||++|.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d---~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKD---LEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcC---HHHHHHHHHHHHHc
Confidence 356666665432 24 89999999999764
No 428
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.82 E-value=1.2e+02 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK 164 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~ 164 (733)
+.+..+.+.+..+=+.|+|..|..+|..|++++-.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34455566677777899999999999999998753
No 429
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.43 E-value=5.2e+02 Score=26.11 Aligned_cols=116 Identities=13% Similarity=0.004 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
+..+|..|-.++..|++++|..-+++|........+.....-. +|.-|-+.-.... |.+|.-++. ++.....
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe-l~~ag~~~~a~QE---yvEA~~l~~----~l~~~~~ 100 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE-LYFAGFVTTALQE---YVEATLLYS----ILKDGRL 100 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhhcchHHH---HHHHHHHHH----HHhcCCC
Confidence 3467777888889999999999988887654321111111112 3334454445555 777765443 2222111
Q ss_pred Cc----ccchh-h-hhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 260 EA----RTREE-T-TELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 260 ~~----~~~~~-~-~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
.. ...+. + ..+-.+. --+|-.+...+..|+++.|..+++.++++
T Consensus 101 ps~~EL~V~~~~YilGl~D~v-GELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 101 PSPEELGVPPIAYILGLADAV-GELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred CCHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 00 00000 0 0000011 12333444566778999999999888764
No 430
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.37 E-value=3.6e+02 Score=31.82 Aligned_cols=76 Identities=17% Similarity=-0.070 Sum_probs=53.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--------CCChHHHHHHHHHHHH
Q 004720 489 LCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICL--------DFTTDFLSLAAHEAVA 560 (733)
Q Consensus 489 ~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~--------~~~~~lL~la~~~a~~ 560 (733)
.+.+++|+++.|.+...++. +....--+...++..|+...|-+|+.+..... ..+.+.|.-.+.++.+
T Consensus 645 elal~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 45678999999888776553 23344456788889999999999998765543 1244555555677777
Q ss_pred cCCHHHHH
Q 004720 561 CQALSVAV 568 (733)
Q Consensus 561 ~~~~~~a~ 568 (733)
.|...+|-
T Consensus 721 ~g~~N~AF 728 (794)
T KOG0276|consen 721 QGKNNLAF 728 (794)
T ss_pred hcccchHH
Confidence 77776663
No 431
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=23.16 E-value=3.6e+02 Score=29.59 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
..+-+|+-+++.+++.+| |+...+.+-++|...|-.+.|.+.|..+
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 456678888888999999 9999999999999999999999988665
No 432
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.06 E-value=1.4e+03 Score=27.56 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=40.4
Q ss_pred HHHHHhcCCHHHHHHHH------HHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHH
Q 004720 447 ASILFRSKDYEASAEMF------EKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLK 520 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y------~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~ 520 (733)
+.....+|+.+.|++.. ....++--.-. +.++ ...-..+..+.++..+.-|.++|.+.-.. -..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld--~~er-e~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------ksi 779 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD--KAER-EPLLLCATYLKKLDSPGLAAEIFLKMGDL-------KSL 779 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc--hhhh-hHHHHHHHHHhhccccchHHHHHHHhccH-------HHH
Confidence 34456777777777643 33332211000 0011 12344556666777777888877754322 112
Q ss_pred HHHHHhcCCHHHHHHHH
Q 004720 521 FKIYLQKNDQEGAINQI 537 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l 537 (733)
-..++..+++++|...-
T Consensus 780 VqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALA 796 (1081)
T ss_pred hhheeecccchHhHhhh
Confidence 33445556666665443
No 433
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=22.47 E-value=2e+02 Score=24.22 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK 164 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~ 164 (733)
..++..+..+.+-|+-|++.|++.-|..|+.=|--.++.
T Consensus 29 ~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLDA 67 (75)
T PF04010_consen 29 EEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLDA 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999888877653
No 434
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=22.01 E-value=2.4e+02 Score=29.12 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=43.8
Q ss_pred HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CChHHHHHHHHHHHh
Q 004720 459 SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE-PNIASAFLKFKIYLQ 526 (733)
Q Consensus 459 A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld-p~~~t~~~~~ki~l~ 526 (733)
|..||.+|..+.|.+ +..|..+|..+...|+.=.|.=+|-+++-.. |.+.+.-.+-++..+
T Consensus 1 A~~~Y~~A~~l~P~~-------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 789999999998855 3468999999999999999999999998663 454444444444443
No 435
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=21.78 E-value=4.8e+02 Score=29.31 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHh--------
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLI-------DRAQEYITEAEK-------- 509 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~-------~~A~e~~~~A~~-------- 509 (733)
..|.-+|-.|||+.|...|+.....+..|.. +.-.|-++-..+.|.+..+.. +....+++.|..
T Consensus 213 ~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dka-w~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~ 291 (414)
T PF12739_consen 213 RLADLAFMLRDYELAYSTYRLLKKDFKNDKA-WKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALP 291 (414)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHhhchh-HHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcc
Confidence 3789999999999999999999876655533 456677777888888887743 122233333211
Q ss_pred -h-CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004720 510 -L-EP--NIASAFLKFKIYLQKNDQEGAINQILAMT 541 (733)
Q Consensus 510 -l-dp--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~ 541 (733)
+ .| ...+.++.+.+....|.+.+|...+-++.
T Consensus 292 ~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~ 327 (414)
T PF12739_consen 292 RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWT 327 (414)
T ss_pred ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 1 12 23455556666666677666555444443
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.74 E-value=6.4e+02 Score=23.22 Aligned_cols=27 Identities=15% Similarity=0.469 Sum_probs=21.9
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHhh
Q 004720 441 AVLWN-CASILFRSKDYEASAEMFEKSM 467 (733)
Q Consensus 441 ~llW~-~g~~~~k~~~y~~A~~~y~~aL 467 (733)
+++|. .|..+.+.|+|++|.+.|+.++
T Consensus 99 A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 99 ALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 35555 8999999999999999999874
No 437
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=2.4e+02 Score=30.48 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=18.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
++...-++++|++|+.+|.-+++++
T Consensus 16 kA~~eD~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 16 KAIDEDNAKNYEEALRLYQNALEYF 40 (439)
T ss_pred HHhhhcchhchHHHHHHHHHHHHHH
Confidence 4455567889999988888887643
No 438
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.36 E-value=1e+03 Score=26.96 Aligned_cols=107 Identities=15% Similarity=0.015 Sum_probs=68.9
Q ss_pred hhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCC--CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 436 RIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLP--FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 436 ~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~--~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
..-+.+.+|. ....+...|+...=-.++..-+..-. .++ ...+-+..-+-.||+..+.|+.|.....+..--+.
T Consensus 164 lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~---e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~ 240 (493)
T KOG2581|consen 164 LDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE---EGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEA 240 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc---hhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccc
Confidence 3444455555 34444445554444444444333221 222 25677788888899999999999999987643222
Q ss_pred ---ChHH--HHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 513 ---NIAS--AFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 513 ---~~~t--~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
+-.+ .|+..+|...++|+..|.+++-+.....+
T Consensus 241 ~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 241 ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 2333 45678899999999999999988776643
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=20.99 E-value=2e+02 Score=32.42 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH-------HhhCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEA-------EKLEP--NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A-------~~ldp--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
..+...|.-+|+|..|++.++.. ...-| ++.+.|.....|+..+++..|++.+..+...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888899999999987732 11223 6788899999999999999999988776544
No 440
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.33 E-value=8.4e+02 Score=24.52 Aligned_cols=138 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred CChHHHHH---HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHH--------hHHHHhcCCCCC
Q 004720 171 SDSDERKL---LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTF--------AKSALSKNETNS 239 (733)
Q Consensus 171 ~~~~e~~~---~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~--------G~~~~~~~~~~~ 239 (733)
.++.+..+ .+++|+..+=-|.+.|++..=.+.-+-+..+..+..+........++-+ |+.+-..=+
T Consensus 1 ~~~~e~v~n~W~~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd--- 77 (200)
T cd00280 1 EADAEAVANRWVLDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFE--- 77 (200)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccC---
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccc--hhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHH
Q 004720 240 LNDALKLMNEALELCEKGLGEARTR--EETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPV 317 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~--~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~ 317 (733)
.++-+.=|+.|+.+++.-..+.... .. .+++--+-...+.++++.|.|++|.+.++..-. +|....
T Consensus 78 ~~~~~TPLESAl~v~~~I~~E~~~~~~lh----e~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~--------d~~~~~ 145 (200)
T cd00280 78 NDEELTPLESALMVLESIEKEFSLPETLH----EEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS--------DPESQK 145 (200)
T ss_pred CCCCcChHHHHHHHHHHHHHhcCCcHHHH----HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc--------CCCchh
Q ss_pred HHHHHH
Q 004720 318 LAMKAW 323 (733)
Q Consensus 318 lk~~il 323 (733)
.+.+.+
T Consensus 146 ~r~kL~ 151 (200)
T cd00280 146 LRMKLL 151 (200)
T ss_pred HHHHHH
No 441
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=20.13 E-value=1.4e+03 Score=26.75 Aligned_cols=58 Identities=16% Similarity=0.016 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.-..|+-+||+..|...|+.+|..++..++ .-..-....+.+++=..|+..|++++..
T Consensus 407 A~mEy~cskD~~~AfrIFeLGLkkf~d~p~-------yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 407 ALMEYYCSKDKETAFRIFELGLKKFGDSPE-------YVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 335678899999999999999988775532 2233345567788888888888888765
Done!