Query 004720
Match_columns 733
No_of_seqs 223 out of 321
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-22 6.5E-27 219.2 39.2 363 137-577 4-368 (388)
2 3ieg_A DNAJ homolog subfamily 99.9 1.5E-21 5E-26 206.9 37.5 335 132-550 3-342 (359)
3 1w3b_A UDP-N-acetylglucosamine 99.9 2.4E-21 8.4E-26 210.4 38.0 341 135-553 36-378 (388)
4 2y4t_A DNAJ homolog subfamily 99.9 5.2E-21 1.8E-25 211.1 38.6 407 131-625 25-443 (450)
5 2gw1_A Mitochondrial precursor 99.9 2.3E-20 7.9E-25 208.7 38.5 388 130-579 4-480 (514)
6 2xpi_A Anaphase-promoting comp 99.9 2.3E-19 7.7E-24 205.6 39.8 461 131-684 83-588 (597)
7 3fp2_A TPR repeat-containing p 99.9 5.6E-20 1.9E-24 207.3 33.5 370 126-552 19-500 (537)
8 2gw1_A Mitochondrial precursor 99.9 8.9E-20 3.1E-24 203.9 32.6 364 133-552 40-487 (514)
9 3ieg_A DNAJ homolog subfamily 99.9 2.3E-18 7.8E-23 182.2 39.8 308 181-579 4-337 (359)
10 2xpi_A Anaphase-promoting comp 99.9 7E-19 2.4E-23 201.5 36.9 415 136-620 121-580 (597)
11 3fp2_A TPR repeat-containing p 99.8 1.1E-17 3.6E-22 188.7 43.3 473 179-728 24-537 (537)
12 3hym_B Cell division cycle pro 99.8 1.8E-18 6.2E-23 181.4 32.8 293 181-564 23-321 (330)
13 4g1t_A Interferon-induced prot 99.8 5.2E-19 1.8E-23 196.8 27.8 377 133-576 52-458 (472)
14 2y4t_A DNAJ homolog subfamily 99.8 2.7E-17 9.1E-22 181.3 39.2 310 180-580 26-361 (450)
15 3hym_B Cell division cycle pro 99.8 5.3E-18 1.8E-22 177.8 28.7 295 134-531 24-322 (330)
16 1fch_A Peroxisomal targeting s 99.8 7.7E-18 2.6E-22 180.2 22.1 292 189-572 34-354 (368)
17 1fch_A Peroxisomal targeting s 99.8 2.9E-18 9.9E-23 183.5 18.1 290 141-538 34-354 (368)
18 4g1t_A Interferon-induced prot 99.8 3.3E-16 1.1E-20 174.1 32.6 348 144-577 23-401 (472)
19 4eqf_A PEX5-related protein; a 99.8 9.2E-17 3.1E-21 172.5 25.1 261 182-573 67-352 (365)
20 3ro2_A PINS homolog, G-protein 99.7 2.3E-16 7.9E-21 164.4 26.6 300 133-545 6-334 (338)
21 3sf4_A G-protein-signaling mod 99.7 6.5E-17 2.2E-21 174.6 23.1 318 133-531 10-364 (406)
22 4a1s_A PINS, partner of inscut 99.7 2.1E-16 7.1E-21 172.2 26.8 303 130-545 46-374 (411)
23 4eqf_A PEX5-related protein; a 99.7 6.9E-17 2.4E-21 173.5 22.6 270 135-539 68-352 (365)
24 3cv0_A Peroxisome targeting si 99.7 3.6E-16 1.2E-20 163.5 25.9 129 182-341 23-166 (327)
25 3sf4_A G-protein-signaling mod 99.7 5.5E-16 1.9E-20 167.3 27.6 289 181-543 10-336 (406)
26 3u4t_A TPR repeat-containing p 99.7 6E-16 2E-20 158.4 23.4 252 181-520 4-261 (272)
27 3uq3_A Heat shock protein STI1 99.7 2.4E-15 8.3E-20 151.6 27.4 231 181-544 6-237 (258)
28 3ro2_A PINS homolog, G-protein 99.7 1.9E-15 6.5E-20 157.4 26.1 296 182-577 7-332 (338)
29 4a1s_A PINS, partner of inscut 99.7 1.2E-15 4.2E-20 166.0 25.6 299 181-577 49-372 (411)
30 3uq3_A Heat shock protein STI1 99.7 2.5E-15 8.6E-20 151.5 25.4 234 131-511 4-237 (258)
31 3cv0_A Peroxisome targeting si 99.7 2.4E-15 8.3E-20 157.2 25.0 280 222-576 22-314 (327)
32 1xnf_A Lipoprotein NLPI; TPR, 99.7 7E-15 2.4E-19 150.2 23.9 252 192-537 17-269 (275)
33 3u4t_A TPR repeat-containing p 99.6 4.8E-14 1.7E-18 144.1 25.3 236 222-549 4-256 (272)
34 2h6f_A Protein farnesyltransfe 99.6 1.4E-14 4.9E-19 159.0 21.8 238 180-549 97-354 (382)
35 3mkr_A Coatomer subunit epsilo 99.6 1.6E-13 5.6E-18 144.6 28.5 267 186-553 5-274 (291)
36 2pl2_A Hypothetical conserved 99.6 1.6E-14 5.4E-19 145.1 19.7 195 181-507 6-211 (217)
37 2pl2_A Hypothetical conserved 99.6 2.9E-14 9.8E-19 143.2 20.9 204 277-540 7-211 (217)
38 3ulq_A Response regulator aspa 99.6 1.6E-13 5.4E-18 149.1 27.9 261 134-512 105-370 (383)
39 3ulq_A Response regulator aspa 99.6 4.5E-13 1.5E-17 145.5 30.9 333 133-577 13-368 (383)
40 2xm6_A Protein corresponding t 99.6 9.7E-12 3.3E-16 140.0 41.6 351 134-577 41-432 (490)
41 3vtx_A MAMA; tetratricopeptide 99.6 5.2E-14 1.8E-18 136.0 19.8 169 220-512 4-172 (184)
42 2h6f_A Protein farnesyltransfe 99.6 6.3E-14 2.2E-18 153.9 22.6 252 132-524 97-363 (382)
43 2q7f_A YRRB protein; TPR, prot 99.6 3.6E-14 1.2E-18 142.1 17.9 218 180-528 23-241 (243)
44 2ho1_A Type 4 fimbrial biogene 99.6 5.2E-13 1.8E-17 134.9 25.4 210 220-551 36-246 (252)
45 3mkr_A Coatomer subunit epsilo 99.6 2E-13 6.8E-18 143.9 22.5 278 140-537 7-288 (291)
46 2q7f_A YRRB protein; TPR, prot 99.6 6.1E-14 2.1E-18 140.4 17.5 212 218-553 20-232 (243)
47 3q15_A PSP28, response regulat 99.6 6.7E-13 2.3E-17 144.1 26.9 187 133-341 102-289 (378)
48 1hz4_A MALT regulatory protein 99.6 8.4E-12 2.9E-16 134.4 35.0 304 129-543 11-322 (373)
49 1qqe_A Vesicular transport pro 99.6 3E-13 1E-17 142.1 22.6 267 126-525 5-284 (292)
50 3nf1_A KLC 1, kinesin light ch 99.5 2.6E-13 8.9E-18 140.6 19.8 280 130-512 25-309 (311)
51 3vtx_A MAMA; tetratricopeptide 99.5 4E-13 1.4E-17 129.7 19.8 166 276-545 6-172 (184)
52 4abn_A Tetratricopeptide repea 99.5 1.1E-13 3.9E-18 156.0 18.1 219 193-540 81-318 (474)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.4E-13 2.2E-17 135.5 22.1 255 142-504 15-269 (275)
54 1ouv_A Conserved hypothetical 99.5 2.9E-12 1E-16 131.9 27.1 123 182-341 8-142 (273)
55 3q15_A PSP28, response regulat 99.5 8.9E-13 3.1E-17 143.1 24.4 258 181-543 102-365 (378)
56 2vq2_A PILW, putative fimbrial 99.5 3.6E-12 1.2E-16 125.4 25.9 208 221-550 8-218 (225)
57 2xm6_A Protein corresponding t 99.5 2.7E-10 9.2E-15 128.2 43.7 348 187-620 46-433 (490)
58 2vq2_A PILW, putative fimbrial 99.5 6.5E-12 2.2E-16 123.5 26.7 203 275-579 8-213 (225)
59 2ho1_A Type 4 fimbrial biogene 99.5 5.9E-12 2E-16 127.2 26.7 205 274-580 36-241 (252)
60 4i17_A Hypothetical protein; T 99.5 2E-12 6.8E-17 129.5 22.5 211 222-554 8-220 (228)
61 2ooe_A Cleavage stimulation fa 99.5 3.8E-11 1.3E-15 136.5 35.5 407 143-622 23-495 (530)
62 1ouv_A Conserved hypothetical 99.5 9.7E-12 3.3E-16 128.0 25.9 222 134-512 8-253 (273)
63 1hz4_A MALT regulatory protein 99.5 7.9E-11 2.7E-15 126.7 33.8 294 180-577 14-322 (373)
64 3nf1_A KLC 1, kinesin light ch 99.5 2E-12 6.8E-17 133.9 20.2 267 180-544 27-308 (311)
65 3edt_B KLC 2, kinesin light ch 99.5 3.3E-12 1.1E-16 129.9 20.2 183 141-341 10-197 (283)
66 4i17_A Hypothetical protein; T 99.4 7.9E-12 2.7E-16 125.0 21.1 210 276-593 8-221 (228)
67 1qqe_A Vesicular transport pro 99.4 4.7E-11 1.6E-15 125.2 27.5 101 445-546 122-231 (292)
68 4abn_A Tetratricopeptide repea 99.4 5.2E-12 1.8E-16 142.4 20.3 218 150-506 79-317 (474)
69 3qky_A Outer membrane assembly 99.4 1.8E-11 6.1E-16 125.4 21.2 213 222-532 16-250 (261)
70 2ond_A Cleavage stimulation fa 99.4 7.7E-11 2.6E-15 124.4 25.4 230 197-550 33-277 (308)
71 4gyw_A UDP-N-acetylglucosamine 99.4 7.5E-12 2.6E-16 148.1 19.4 167 274-544 8-175 (723)
72 3edt_B KLC 2, kinesin light ch 99.4 8.7E-11 3E-15 119.3 23.6 184 191-510 12-198 (283)
73 2ifu_A Gamma-SNAP; membrane fu 99.4 4.3E-11 1.5E-15 126.5 21.9 217 190-512 1-225 (307)
74 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.1E-10 7E-15 115.3 23.7 206 222-512 5-215 (225)
75 4gco_A Protein STI-1; structur 99.3 2.5E-11 8.5E-16 111.3 15.1 99 445-550 18-117 (126)
76 3e4b_A ALGK; tetratricopeptide 99.3 1.3E-10 4.6E-15 130.0 24.2 353 136-576 7-386 (452)
77 3qky_A Outer membrane assembly 99.3 8.9E-11 3E-15 120.2 20.5 136 181-341 16-176 (261)
78 4gyw_A UDP-N-acetylglucosamine 99.3 2.3E-11 7.7E-16 144.0 17.0 165 132-341 9-173 (723)
79 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.3E-15 110.2 18.3 169 273-545 6-175 (186)
80 3e4b_A ALGK; tetratricopeptide 99.3 8.6E-10 2.9E-14 123.4 28.0 140 186-362 9-156 (452)
81 1xi4_A Clathrin heavy chain; a 99.3 6.2E-09 2.1E-13 127.1 36.9 347 66-576 942-1308(1630)
82 2ooe_A Cleavage stimulation fa 99.2 2.7E-08 9.2E-13 112.9 38.6 372 191-619 23-454 (530)
83 2pzi_A Probable serine/threoni 99.2 1.3E-10 4.4E-15 137.0 16.3 196 232-549 402-608 (681)
84 3rkv_A Putative peptidylprolyl 99.2 2.6E-10 8.8E-15 108.1 15.4 107 442-548 13-131 (162)
85 3urz_A Uncharacterized protein 99.2 2.1E-10 7.2E-15 114.0 14.8 178 132-345 4-189 (208)
86 4ga2_A E3 SUMO-protein ligase 99.2 5.5E-11 1.9E-15 112.2 9.7 146 138-328 3-149 (150)
87 2qfc_A PLCR protein; TPR, HTH, 99.2 1.3E-09 4.3E-14 114.0 19.8 190 181-510 76-266 (293)
88 4gcn_A Protein STI-1; structur 99.2 2.9E-10 1E-14 104.1 13.2 100 445-552 13-120 (127)
89 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.8E-10 1.6E-14 112.6 15.7 188 133-345 5-216 (225)
90 3u3w_A Transcriptional activat 99.1 2E-09 6.9E-14 112.5 21.0 188 183-510 78-266 (293)
91 2ifu_A Gamma-SNAP; membrane fu 99.1 1.6E-09 5.6E-14 114.2 20.4 189 127-340 31-222 (307)
92 3urz_A Uncharacterized protein 99.1 8.1E-10 2.8E-14 109.8 17.0 120 181-324 5-133 (208)
93 4ga2_A E3 SUMO-protein ligase 99.1 3.5E-10 1.2E-14 106.6 13.3 112 444-562 35-148 (150)
94 3upv_A Heat shock protein STI1 99.1 8.1E-10 2.8E-14 99.8 15.0 95 443-544 7-102 (126)
95 2hr2_A Hypothetical protein; a 99.1 2.2E-10 7.7E-15 109.3 11.7 103 441-545 12-133 (159)
96 2ond_A Cleavage stimulation fa 99.1 1.1E-08 3.7E-13 107.8 25.9 219 292-581 33-274 (308)
97 3as5_A MAMA; tetratricopeptide 99.1 1.1E-08 3.7E-13 96.6 22.1 165 443-622 11-176 (186)
98 2pzi_A Probable serine/threoni 99.1 9.4E-10 3.2E-14 129.6 17.6 197 309-576 390-601 (681)
99 3gyz_A Chaperone protein IPGC; 99.1 7.4E-10 2.5E-14 105.2 13.5 97 443-546 39-136 (151)
100 2qfc_A PLCR protein; TPR, HTH, 99.1 3.4E-09 1.2E-13 110.7 18.9 186 132-340 75-264 (293)
101 1xi4_A Clathrin heavy chain; a 99.1 5.2E-08 1.8E-12 119.1 30.4 121 443-576 1283-1413(1630)
102 4gcn_A Protein STI-1; structur 99.1 1.3E-09 4.6E-14 99.6 12.7 107 130-253 6-112 (127)
103 1p5q_A FKBP52, FK506-binding p 99.0 3.3E-09 1.1E-13 113.8 17.5 136 442-577 149-294 (336)
104 3sz7_A HSC70 cochaperone (SGT) 99.0 2.7E-09 9.1E-14 101.2 14.9 101 442-549 13-114 (164)
105 4b4t_Q 26S proteasome regulato 99.0 2.2E-08 7.5E-13 109.4 23.8 235 136-510 8-245 (434)
106 3u3w_A Transcriptional activat 99.0 5.6E-09 1.9E-13 109.0 17.7 186 132-340 75-264 (293)
107 2vgx_A Chaperone SYCD; alterna 99.0 3.3E-09 1.1E-13 99.8 14.3 101 443-550 24-125 (148)
108 3ro3_A PINS homolog, G-protein 99.0 1.9E-08 6.7E-13 92.4 18.9 154 128-304 5-158 (164)
109 2fbn_A 70 kDa peptidylprolyl i 99.0 4.9E-09 1.7E-13 102.6 15.3 115 442-556 40-164 (198)
110 2xev_A YBGF; tetratricopeptide 99.0 1.2E-08 4.1E-13 91.6 16.3 103 443-549 5-111 (129)
111 2xcb_A PCRH, regulatory protei 99.0 5.6E-09 1.9E-13 96.8 14.3 101 443-550 21-122 (142)
112 1a17_A Serine/threonine protei 99.0 1.4E-08 4.9E-13 94.8 16.7 127 443-576 16-145 (166)
113 2vyi_A SGTA protein; chaperone 99.0 1.6E-08 5.5E-13 89.8 15.6 112 442-560 14-126 (131)
114 2dba_A Smooth muscle cell asso 99.0 1.3E-08 4.4E-13 93.2 15.3 107 443-553 31-138 (148)
115 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 9.1E-09 3.1E-13 115.3 16.7 135 442-576 270-414 (457)
116 2fo7_A Synthetic consensus TPR 98.9 3.7E-08 1.3E-12 87.5 17.5 126 445-577 6-132 (136)
117 2lni_A Stress-induced-phosphop 98.9 1.2E-08 4.2E-13 91.3 14.2 103 443-552 19-122 (133)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.3E-08 8E-13 98.0 16.8 126 442-577 8-150 (213)
119 1hxi_A PEX5, peroxisome target 98.9 6.4E-09 2.2E-13 94.3 11.4 96 444-546 21-117 (121)
120 2r5s_A Uncharacterized protein 98.9 1.1E-08 3.7E-13 98.4 13.3 163 135-341 9-172 (176)
121 1elw_A TPR1-domain of HOP; HOP 98.9 3.3E-08 1.1E-12 86.1 15.3 104 443-553 7-111 (118)
122 2vsy_A XCC0866; transferase, g 98.9 1.2E-08 4E-13 117.0 15.9 155 145-344 2-159 (568)
123 3q49_B STIP1 homology and U bo 98.9 1.5E-08 5E-13 92.1 13.4 97 442-545 11-108 (137)
124 3gyz_A Chaperone protein IPGC; 98.9 2.2E-09 7.5E-14 101.9 7.9 115 199-344 21-135 (151)
125 3dra_A Protein farnesyltransfe 98.9 2.1E-07 7.1E-12 98.7 23.9 224 188-542 40-286 (306)
126 1p5q_A FKBP52, FK506-binding p 98.9 8.6E-09 2.9E-13 110.6 12.6 159 144-340 125-292 (336)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.9 6.4E-08 2.2E-12 94.9 18.0 136 277-513 8-153 (213)
128 4gco_A Protein STI-1; structur 98.9 4.6E-08 1.6E-12 89.3 15.5 103 478-580 10-113 (126)
129 1ihg_A Cyclophilin 40; ppiase 98.9 1.9E-08 6.4E-13 109.7 15.2 125 442-567 225-360 (370)
130 3gw4_A Uncharacterized protein 98.9 8.8E-08 3E-12 92.6 18.1 152 131-304 25-176 (203)
131 3rjv_A Putative SEL1 repeat pr 98.9 1.3E-07 4.6E-12 94.0 19.7 178 241-544 3-198 (212)
132 3rkv_A Putative peptidylprolyl 98.8 3.7E-08 1.3E-12 93.1 14.6 119 125-253 4-126 (162)
133 2fo7_A Synthetic consensus TPR 98.8 8E-08 2.7E-12 85.2 16.0 128 183-341 4-131 (136)
134 1a17_A Serine/threonine protei 98.8 5.7E-08 1.9E-12 90.6 15.2 142 123-303 4-145 (166)
135 2if4_A ATFKBP42; FKBP-like, al 98.8 1.2E-08 4E-13 109.7 11.1 136 443-578 182-329 (338)
136 3k9i_A BH0479 protein; putativ 98.8 1.8E-08 6.3E-13 90.0 10.6 96 452-551 2-98 (117)
137 1na0_A Designed protein CTPR3; 98.8 1.4E-07 4.8E-12 82.8 16.1 103 444-553 13-116 (125)
138 2hr2_A Hypothetical protein; a 98.8 5E-08 1.7E-12 93.0 13.5 122 129-258 8-136 (159)
139 2r5s_A Uncharacterized protein 98.8 2.7E-08 9.3E-13 95.6 11.8 161 182-374 8-172 (176)
140 3rjv_A Putative SEL1 repeat pr 98.8 3.7E-07 1.3E-11 90.8 20.4 177 198-512 4-199 (212)
141 3ro3_A PINS homolog, G-protein 98.8 7.6E-08 2.6E-12 88.4 14.3 146 180-340 9-156 (164)
142 1b89_A Protein (clathrin heavy 98.8 1.6E-08 5.5E-13 111.6 11.1 201 277-576 34-235 (449)
143 4b4t_Q 26S proteasome regulato 98.8 4.7E-07 1.6E-11 98.8 22.5 219 184-542 8-244 (434)
144 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 3.7E-08 1.2E-12 110.4 13.2 156 144-337 246-409 (457)
145 2vgx_A Chaperone SYCD; alterna 98.8 1E-07 3.5E-12 89.4 14.2 114 461-581 8-122 (148)
146 3n71_A Histone lysine methyltr 98.7 8.5E-08 2.9E-12 108.3 15.8 154 132-303 309-463 (490)
147 2e2e_A Formate-dependent nitri 98.7 7.3E-08 2.5E-12 92.0 13.0 128 447-581 17-148 (177)
148 2vsy_A XCC0866; transferase, g 98.7 2.1E-07 7.1E-12 106.6 19.1 130 443-579 26-159 (568)
149 1elr_A TPR2A-domain of HOP; HO 98.7 1.5E-07 5.2E-12 83.5 14.1 101 443-551 7-115 (131)
150 3qou_A Protein YBBN; thioredox 98.7 1.6E-07 5.6E-12 98.0 16.3 165 443-620 120-285 (287)
151 1b89_A Protein (clathrin heavy 98.7 7.9E-08 2.7E-12 106.1 14.1 296 134-576 34-340 (449)
152 3n71_A Histone lysine methyltr 98.7 5.9E-08 2E-12 109.6 13.3 146 182-339 311-461 (490)
153 3qou_A Protein YBBN; thioredox 98.7 1.5E-07 5.2E-12 98.3 15.6 162 181-373 118-282 (287)
154 2kck_A TPR repeat; tetratricop 98.7 7.8E-08 2.7E-12 83.0 10.5 96 445-547 11-110 (112)
155 3gw4_A Uncharacterized protein 98.7 3.5E-07 1.2E-11 88.4 16.2 169 142-340 2-174 (203)
156 4f3v_A ESX-1 secretion system 98.7 2.5E-07 8.5E-12 96.6 14.9 207 192-513 18-240 (282)
157 2xcb_A PCRH, regulatory protei 98.7 4.6E-07 1.6E-11 83.7 15.2 113 462-581 6-119 (142)
158 2vyi_A SGTA protein; chaperone 98.6 4.1E-07 1.4E-11 80.5 13.6 119 180-329 12-130 (131)
159 2e2e_A Formate-dependent nitri 98.6 3.4E-07 1.2E-11 87.3 13.7 101 443-550 47-151 (177)
160 2l6j_A TPR repeat-containing p 98.6 1.9E-08 6.3E-13 87.7 4.2 89 443-538 7-102 (111)
161 2c2l_A CHIP, carboxy terminus 98.6 1.3E-07 4.6E-12 98.4 11.3 96 443-545 7-103 (281)
162 2lni_A Stress-induced-phosphop 98.6 4.2E-07 1.4E-11 81.1 12.7 117 180-327 16-132 (133)
163 1wao_1 Serine/threonine protei 98.6 1.2E-07 4.2E-12 106.7 11.2 121 445-572 11-134 (477)
164 3upv_A Heat shock protein STI1 98.6 1.2E-06 4.1E-11 78.6 15.3 100 479-578 2-102 (126)
165 2c2l_A CHIP, carboxy terminus 98.6 3.6E-07 1.2E-11 95.2 13.5 97 221-341 4-100 (281)
166 2fbn_A 70 kDa peptidylprolyl i 98.6 6.3E-07 2.2E-11 87.4 14.0 132 180-335 38-178 (198)
167 3dra_A Protein farnesyltransfe 98.6 6.7E-06 2.3E-10 87.1 22.8 235 281-578 38-288 (306)
168 3sz7_A HSC70 cochaperone (SGT) 98.5 2.7E-06 9.3E-11 80.2 17.1 104 478-581 8-112 (164)
169 1ihg_A Cyclophilin 40; ppiase 98.5 7.2E-07 2.5E-11 97.1 14.7 143 126-296 217-362 (370)
170 1elw_A TPR1-domain of HOP; HOP 98.5 1.6E-06 5.5E-11 75.2 14.0 109 181-320 5-113 (118)
171 4f3v_A ESX-1 secretion system 98.5 4.4E-06 1.5E-10 87.1 17.6 219 277-546 9-240 (282)
172 1na0_A Designed protein CTPR3; 98.4 2.6E-06 9E-11 74.5 13.6 114 181-325 10-123 (125)
173 3mv2_B Coatomer subunit epsilo 98.4 3.7E-05 1.3E-09 81.2 24.7 161 446-618 106-281 (310)
174 2kck_A TPR repeat; tetratricop 98.4 1.4E-06 4.7E-11 75.0 11.4 102 479-580 4-109 (112)
175 2v5f_A Prolyl 4-hydroxylase su 98.4 6.4E-07 2.2E-11 78.9 9.0 75 445-519 10-85 (104)
176 1na3_A Designed protein CTPR2; 98.4 2E-06 6.8E-11 71.8 11.2 79 443-528 12-91 (91)
177 1elr_A TPR2A-domain of HOP; HO 98.4 2.6E-06 8.9E-11 75.3 12.4 106 131-253 3-108 (131)
178 2if4_A ATFKBP42; FKBP-like, al 98.4 7.7E-07 2.6E-11 95.4 9.7 118 126-253 173-293 (338)
179 3k9i_A BH0479 protein; putativ 98.4 5.1E-07 1.7E-11 80.5 6.6 86 192-304 2-90 (117)
180 2xev_A YBGF; tetratricopeptide 98.3 1.5E-05 5.2E-10 71.0 16.2 98 483-580 4-108 (129)
181 3qww_A SET and MYND domain-con 98.3 1.4E-06 4.9E-11 96.7 11.3 114 191-316 309-424 (433)
182 1wao_1 Serine/threonine protei 98.3 4E-07 1.4E-11 102.5 6.9 127 132-299 6-134 (477)
183 3q49_B STIP1 homology and U bo 98.3 7.5E-06 2.6E-10 73.8 14.0 103 478-580 6-109 (137)
184 2kc7_A BFR218_protein; tetratr 98.3 7.5E-07 2.6E-11 76.3 5.9 84 445-543 5-90 (99)
185 1hxi_A PEX5, peroxisome target 98.3 6.7E-06 2.3E-10 74.1 12.0 95 483-577 19-114 (121)
186 3qwp_A SET and MYND domain-con 98.3 4.3E-06 1.5E-10 92.9 12.7 122 183-316 290-413 (429)
187 3mv2_B Coatomer subunit epsilo 98.2 8.6E-05 2.9E-09 78.4 20.6 91 454-554 192-293 (310)
188 3qww_A SET and MYND domain-con 98.2 1.1E-05 3.7E-10 89.6 14.3 118 134-260 300-418 (433)
189 3dss_A Geranylgeranyl transfer 98.2 0.00025 8.5E-09 75.7 24.3 258 187-512 36-306 (331)
190 1zu2_A Mitochondrial import re 98.2 1.8E-06 6.1E-11 82.2 6.7 91 452-549 14-126 (158)
191 2dba_A Smooth muscle cell asso 98.2 3.6E-05 1.2E-09 69.8 15.1 101 478-578 25-129 (148)
192 2kat_A Uncharacterized protein 98.2 5E-06 1.7E-10 73.3 9.0 81 457-544 2-83 (115)
193 3q7a_A Farnesyltransferase alp 98.2 0.00021 7.2E-09 76.7 23.0 220 240-542 70-330 (349)
194 3dss_A Geranylgeranyl transfer 98.2 0.0003 1E-08 75.0 23.8 195 285-547 39-271 (331)
195 3qwp_A SET and MYND domain-con 98.1 1.1E-05 3.8E-10 89.5 12.5 139 131-287 286-425 (429)
196 1na3_A Designed protein CTPR2; 98.1 2.9E-05 1E-09 64.4 12.0 75 478-552 6-81 (91)
197 3ma5_A Tetratricopeptide repea 98.1 9.1E-06 3.1E-10 70.4 8.6 64 442-512 9-72 (100)
198 3q7a_A Farnesyltransferase alp 98.1 0.00042 1.4E-08 74.4 22.8 236 282-578 61-332 (349)
199 2l6j_A TPR repeat-containing p 98.0 5.5E-05 1.9E-09 65.2 11.8 68 480-547 3-71 (111)
200 3ma5_A Tetratricopeptide repea 98.0 2.2E-05 7.4E-10 68.0 8.9 66 478-543 4-70 (100)
201 1dce_A Protein (RAB geranylger 97.9 0.00017 5.7E-09 82.9 18.0 178 138-358 34-237 (567)
202 1zu2_A Mitochondrial import re 97.9 1E-05 3.6E-10 76.9 6.2 89 192-304 14-120 (158)
203 4e6h_A MRNA 3'-END-processing 97.9 0.054 1.9E-06 63.3 38.2 177 441-622 378-573 (679)
204 1dce_A Protein (RAB geranylger 97.9 0.00034 1.2E-08 80.4 18.7 176 233-531 40-243 (567)
205 2v5f_A Prolyl 4-hydroxylase su 97.8 7.8E-05 2.7E-09 65.3 10.0 77 222-315 6-82 (104)
206 2kat_A Uncharacterized protein 97.7 7.7E-05 2.6E-09 65.5 8.5 63 443-512 22-84 (115)
207 2kc7_A BFR218_protein; tetratr 97.5 0.00029 1E-08 59.7 8.9 67 485-551 4-72 (99)
208 3bee_A Putative YFRE protein; 97.5 0.00055 1.9E-08 58.9 10.1 72 478-549 3-78 (93)
209 4e6h_A MRNA 3'-END-processing 97.4 0.016 5.5E-07 67.8 23.4 242 291-581 325-574 (679)
210 1klx_A Cysteine rich protein B 97.2 0.0026 8.9E-08 58.4 12.0 110 193-341 8-125 (138)
211 1klx_A Cysteine rich protein B 97.2 0.0024 8.2E-08 58.6 11.6 89 446-544 31-127 (138)
212 2uy1_A Cleavage stimulation fa 97.1 0.3 1E-05 54.7 30.1 127 441-579 286-415 (493)
213 4g26_A Pentatricopeptide repea 97.1 0.024 8.2E-07 63.9 20.6 90 447-544 112-205 (501)
214 1pc2_A Mitochondria fission pr 97.0 0.0026 8.9E-08 59.8 9.5 76 442-523 34-114 (152)
215 3ly7_A Transcriptional activat 96.8 0.03 1E-06 60.2 16.6 138 185-344 201-341 (372)
216 3ffl_A Anaphase-promoting comp 96.5 0.03 1E-06 53.1 12.9 114 182-299 22-146 (167)
217 3ly7_A Transcriptional activat 96.4 0.063 2.2E-06 57.7 16.4 76 479-555 275-350 (372)
218 3bee_A Putative YFRE protein; 96.1 0.03 1E-06 47.8 9.6 63 446-515 12-78 (93)
219 3u64_A Protein TP_0956; tetrat 96.1 0.02 6.7E-07 59.5 9.6 89 456-549 179-276 (301)
220 1pc2_A Mitochondria fission pr 96.1 0.037 1.3E-06 51.9 10.6 88 457-551 15-108 (152)
221 3ffl_A Anaphase-promoting comp 95.7 0.053 1.8E-06 51.3 10.3 99 442-540 22-148 (167)
222 2uy1_A Cleavage stimulation fa 95.7 3 0.0001 46.5 26.7 166 442-621 214-415 (493)
223 4g26_A Pentatricopeptide repea 95.6 0.13 4.3E-06 57.9 14.9 159 187-372 33-201 (501)
224 3txn_A 26S proteasome regulato 95.6 0.2 6.8E-06 54.4 15.6 109 136-255 103-212 (394)
225 3u64_A Protein TP_0956; tetrat 95.6 0.87 3E-05 47.2 19.5 199 104-344 41-271 (301)
226 1nzn_A CGI-135 protein, fissio 94.7 0.2 6.8E-06 45.3 10.3 76 442-522 37-116 (126)
227 1y8m_A FIS1; mitochondria, unk 93.0 0.72 2.5E-05 42.5 10.7 75 443-523 42-120 (144)
228 4h7y_A Dual specificity protei 92.9 0.85 2.9E-05 42.4 11.1 99 457-556 36-136 (161)
229 4b4t_R RPN7, 26S proteasome re 92.7 0.75 2.6E-05 50.4 12.6 104 135-253 134-237 (429)
230 3o48_A Mitochondria fission 1 92.5 0.93 3.2E-05 41.2 10.7 74 444-523 44-121 (134)
231 3txn_A 26S proteasome regulato 92.5 8.5 0.00029 41.5 20.3 170 445-617 24-208 (394)
232 4b4t_P 26S proteasome regulato 92.1 0.96 3.3E-05 49.9 12.5 113 131-254 136-248 (445)
233 1nzn_A CGI-135 protein, fissio 91.5 1.1 3.6E-05 40.5 9.9 73 481-553 35-113 (126)
234 1zbp_A Hypothetical protein VP 89.8 3.1 0.00011 42.4 12.6 122 490-623 6-133 (273)
235 4b4t_P 26S proteasome regulato 89.6 18 0.00061 39.6 19.8 96 446-543 143-247 (445)
236 3mkq_B Coatomer subunit alpha; 89.1 5.8 0.0002 37.8 13.2 105 443-574 36-141 (177)
237 2ff4_A Probable regulatory pro 88.0 6 0.0002 42.5 14.3 98 446-543 121-234 (388)
238 1y8m_A FIS1; mitochondria, unk 87.4 4 0.00014 37.5 10.4 74 480-553 38-116 (144)
239 3o48_A Mitochondria fission 1 86.9 2.4 8.3E-05 38.5 8.5 74 480-553 39-117 (134)
240 3kae_A CDC27, possible protein 86.0 4.5 0.00016 38.3 10.0 81 446-538 39-138 (242)
241 2ff4_A Probable regulatory pro 85.9 4 0.00014 43.9 11.4 106 227-339 121-231 (388)
242 4b4t_R RPN7, 26S proteasome re 85.8 4.9 0.00017 43.8 12.3 96 445-544 136-238 (429)
243 3mkq_A Coatomer beta'-subunit; 83.4 10 0.00036 43.8 14.4 96 443-565 683-779 (814)
244 3spa_A Mtrpol, DNA-directed RN 83.2 5.8 0.0002 47.9 11.8 119 446-575 133-259 (1134)
245 4gns_B Protein CSD3, chitin bi 78.8 40 0.0014 39.5 16.8 59 442-507 339-397 (754)
246 2nsz_A Programmed cell death p 78.4 9.2 0.00032 34.3 9.0 94 520-617 13-109 (129)
247 2ion_A PDCD4, programmed cell 77.7 9.4 0.00032 35.4 9.1 91 520-614 15-108 (152)
248 4h7y_A Dual specificity protei 77.6 30 0.001 32.1 12.1 67 442-515 62-128 (161)
249 4b4t_S RPN3, 26S proteasome re 76.7 18 0.00061 40.3 12.4 148 442-599 232-395 (523)
250 3spa_A Mtrpol, DNA-directed RN 76.6 17 0.00058 44.0 12.9 97 479-576 125-229 (1134)
251 3mkq_A Coatomer beta'-subunit; 73.9 14 0.00049 42.6 11.6 48 449-508 661-708 (814)
252 2crb_A Nuclear receptor bindin 73.5 6.1 0.00021 33.3 5.7 38 129-166 12-49 (97)
253 4gns_B Protein CSD3, chitin bi 73.4 7.7 0.00026 45.5 8.8 61 481-544 337-398 (754)
254 4fhn_B Nucleoporin NUP120; pro 71.5 1E+02 0.0035 37.8 18.8 56 449-506 908-963 (1139)
255 3mkq_B Coatomer subunit alpha; 69.1 67 0.0023 30.4 12.8 99 449-571 14-112 (177)
256 2rg8_A Programmed cell death p 58.1 38 0.0013 31.7 8.8 90 521-613 17-106 (165)
257 3lpz_A GET4 (YOR164C homolog); 57.0 1.9E+02 0.0065 30.2 19.8 78 311-394 134-213 (336)
258 1ya0_A SMG-7 transcript varian 55.0 45 0.0016 37.0 10.2 76 438-520 150-226 (497)
259 4fhn_B Nucleoporin NUP120; pro 53.9 66 0.0023 39.5 12.5 98 444-541 846-965 (1139)
260 1zbp_A Hypothetical protein VP 52.1 1.1E+02 0.0036 31.1 11.4 33 437-471 99-131 (273)
261 3eiq_C Programmed cell death p 49.6 55 0.0019 34.6 9.3 91 521-615 224-317 (358)
262 2wpv_A GET4, UPF0363 protein Y 49.4 2.4E+02 0.0081 29.1 19.6 65 311-377 132-200 (312)
263 2ynq_A ESSB; membrane protein, 44.1 84 0.0029 29.2 8.3 95 446-555 14-109 (161)
264 2rpa_A Katanin P60 ATPase-cont 41.8 25 0.00085 28.7 3.9 38 129-166 9-46 (78)
265 1ya0_A SMG-7 transcript varian 39.6 67 0.0023 35.6 8.4 56 188-253 160-215 (497)
266 3l6a_A Eukaryotic translation 39.1 55 0.0019 34.7 7.4 42 521-562 19-60 (364)
267 2w2u_A Hypothetical P60 katani 37.5 31 0.0011 28.4 4.0 24 446-469 25-48 (83)
268 2crb_A Nuclear receptor bindin 37.3 38 0.0013 28.5 4.4 30 181-210 16-45 (97)
269 2vkj_A TM1634; membrane protei 37.0 86 0.0029 26.1 6.4 44 445-493 58-102 (106)
270 2cpt_A SKD1 protein, vacuolar 36.2 1.6E+02 0.0054 25.8 8.7 38 127-164 13-50 (117)
271 4a5x_A MITD1, MIT domain-conta 35.3 54 0.0018 27.1 5.2 25 445-469 21-45 (86)
272 2ijq_A Hypothetical protein; s 32.8 1.7E+02 0.0058 27.2 8.7 65 444-509 36-103 (161)
273 2zu6_B Programmed cell death p 32.4 89 0.0031 32.2 7.5 78 521-602 173-253 (307)
274 2v6y_A AAA family ATPase, P60 31.6 33 0.0011 28.2 3.2 25 445-469 16-40 (83)
275 3t5x_A PCI domain-containing p 29.0 1.3E+02 0.0044 28.9 7.5 57 440-498 14-70 (203)
276 3t5v_B Nuclear mRNA export pro 28.8 5.6E+02 0.019 27.7 13.5 94 187-290 183-280 (455)
277 3mkr_B Coatomer subunit alpha; 28.6 4.9E+02 0.017 26.8 12.1 27 445-471 107-133 (320)
278 4b4t_S RPN3, 26S proteasome re 27.4 1.3E+02 0.0045 33.4 8.1 63 187-254 238-300 (523)
279 1ug3_A EIF4GI, eukaryotic prot 26.3 1.2E+02 0.0039 31.7 7.2 41 521-562 18-58 (339)
280 1wfd_A Hypothetical protein 15 26.0 2.5E+02 0.0087 23.2 7.9 39 126-164 9-47 (93)
281 4b4t_O 26S proteasome regulato 26.0 4.7E+02 0.016 27.5 12.2 105 144-253 88-198 (393)
282 2w2u_A Hypothetical P60 katani 26.0 55 0.0019 26.9 3.6 39 126-164 13-51 (83)
283 3eab_A Spastin; spastin, MIT, 25.3 29 0.00099 29.0 1.7 21 192-212 9-29 (89)
284 3t5x_A PCI domain-containing p 24.6 1.1E+02 0.0039 29.2 6.3 56 220-290 13-68 (203)
285 4b4t_O 26S proteasome regulato 24.4 1.2E+02 0.004 32.4 6.9 101 240-340 92-196 (393)
286 4gq2_M Nucleoporin NUP120; bet 24.0 4.4E+02 0.015 31.5 12.6 30 310-339 837-866 (950)
287 2zu6_B Programmed cell death p 24.0 1.4E+02 0.0048 30.7 7.2 39 524-563 13-51 (307)
288 3lvg_A Clathrin heavy chain 1; 23.7 0.21 7.2E-06 55.2 -14.7 54 277-339 56-109 (624)
289 2dl1_A Spartin; SPG20, MIT, st 22.4 73 0.0025 28.0 3.8 37 196-235 19-55 (116)
290 2cwy_A Hypothetical protein TT 22.4 1.5E+02 0.0051 24.8 5.8 63 444-509 5-67 (94)
291 3mv2_A Coatomer subunit alpha; 22.1 6.7E+02 0.023 25.9 13.2 26 445-470 119-144 (325)
292 1qsa_A Protein (soluble lytic 21.7 4.7E+02 0.016 29.6 11.5 129 183-339 217-345 (618)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.9e-22 Score=219.20 Aligned_cols=363 Identities=12% Similarity=0.024 Sum_probs=277.3
Q ss_pred HhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchh
Q 004720 137 KTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEH 216 (733)
Q Consensus 137 k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~ 216 (733)
..|+.++..|+++.|...|+++++..|. . ..++...+.++...|+++.|+.+++++....|..+.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~--------~------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~- 68 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPD--------N------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE- 68 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-
Confidence 4578889999999999999998876431 1 134445577888999999999999999998887553
Q ss_pred HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHH
Q 004720 217 YKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIK 296 (733)
Q Consensus 217 ~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~ 296 (733)
.++++|..+...|+ +++|+..|++++.+ +|.+ ..++..++.+|...|++++|+.
T Consensus 69 ------~~~~lg~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 69 ------AYSNLGNVYKERGQ---LQEAIEHYRHALRL---KPDF--------------IDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp ------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHHSCSSHHHH
T ss_pred ------HHHHHHHHHHHCCC---HHHHHHHHHHHHHc---Ccch--------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 58888999999999 99999999999998 4422 1268889999999999999999
Q ss_pred HHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHh
Q 004720 297 CVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLG 375 (733)
Q Consensus 297 ~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ 375 (733)
+++.+.+. ++..+......+.++...|++++|+..+..++...|.....+...+..|...+. +.|...+++++.
T Consensus 123 ~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~- 197 (388)
T 1w3b_A 123 AYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT- 197 (388)
T ss_dssp HHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 99988886 456677778889999999999999999999886666666667777777776665 666666665432
Q ss_pred hhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC
Q 004720 376 LLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD 455 (733)
Q Consensus 376 ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~ 455 (733)
..|++...+...+.........+.....+. +.....+.....+.+.|..+++.|+
T Consensus 198 -----------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 198 -----------------------LDPNFLDAYINLGNVLKEARIFDRAVAAYL--RALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp -----------------------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHH--HHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 233333333333333322222222222221 0000001112234458999999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHH
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al 534 (733)
|++|+++|+.++...|.+ ..++.+++.+|.+.|++++|++.++++++++| ++.+.+.+..++...|++++|+
T Consensus 253 ~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHHHHHHHHHHTCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999987754 35689999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 535 NQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
+.++++....+.++.....-+....+.|+.+.|+..++..++.
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999887766765555566777889999999999988883
No 2
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.5e-21 Score=206.92 Aligned_cols=335 Identities=15% Similarity=0.126 Sum_probs=261.7
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......|..++..|+++.|..+|+++++..|. . ...+...+.++...|+++.|+..++++..+.|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 68 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------N------YIAYYRRATVFLAMGKSKAALPDLTKVIALKM 68 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--------c------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999999986431 1 24666778999999999999999999999988
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC---CCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL---GEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~---~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
..+ .+++.+|..+...|+ +++|+.+|++++++ .| .+......... -.....+..+|.+|...
T Consensus 69 ~~~-------~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 69 DFT-------AARLQRGHLLLKQGK---LDEAEDDFKKVLKS---NPSEQEEKEAESQLVK--ADEMQRLRSQALDAFDG 133 (359)
T ss_dssp TCH-------HHHHHHHHHHHHHTC---HHHHHHHHHHHHTS---CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred Ccc-------hHHHHHHHHHHHcCC---hHHHHHHHHHHHhc---CCcccChHHHHHHHHH--HHHHHHHHHHHHHHHHc
Confidence 765 357888999999999 99999999999987 43 11110000000 00122445568999999
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHH
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAE 367 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~ 367 (733)
|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...+.....+...+.+|...+. +.|.+
T Consensus 134 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 134 ADYTAAITFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp TCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999886 456788889999999999999999999999986666666677777887776665 55555
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHH
Q 004720 368 TAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCA 447 (733)
Q Consensus 368 ~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g 447 (733)
.++++ + +..|+++..+.. +... ......+..|
T Consensus 210 ~~~~a----------------------~--~~~~~~~~~~~~----~~~~--------------------~~~~~~~~~a 241 (359)
T 3ieg_A 210 EVREC----------------------L--KLDQDHKRCFAH----YKQV--------------------KKLNKLIESA 241 (359)
T ss_dssp HHHHH----------------------H--HHCTTCHHHHHH----HHHH--------------------HHHHHHHHHH
T ss_pred HHHHH----------------------H--hhCccchHHHHH----HHHH--------------------HHHHHHHHHH
Confidence 55533 2 234444332200 0000 0011234579
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHh
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQ 526 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~ 526 (733)
..+++.|+|++|+++|+.++...|.+. .....++..++.+|.+.|++++|+++++++++.+| ++...+.+..++..
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVA---EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999988764 35567789999999999999999999999999999 89999999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCChHH
Q 004720 527 KNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 527 ~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
.|++++|+++++++.+..+.+++.
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999987776663
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=2.4e-21 Score=210.44 Aligned_cols=341 Identities=12% Similarity=-0.014 Sum_probs=258.6
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|..++..|+++.|..++++|+...|. . ...+...+.++...|++++|+..++++..+.|..+
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--------L------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI 101 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------c------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence 345678888999999999999999876431 1 24566678888999999999999999999988765
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESV 294 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekA 294 (733)
. .++++|..+...|+ +++|+..|++++++ +|... .++..++.+|...|++++|
T Consensus 102 ~-------~~~~l~~~~~~~g~---~~~A~~~~~~al~~---~p~~~--------------~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 102 D-------GYINLAAALVAAGD---MEGAVQAYVSALQY---NPDLY--------------CVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp H-------HHHHHHHHHHHHSC---SSHHHHHHHHHHHH---CTTCT--------------HHHHHHHHHHHTTSCHHHH
T ss_pred H-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCcH--------------HHHHHHHHHHHHccCHHHH
Confidence 3 47888999999999 99999999999988 54221 2677889999999999999
Q ss_pred HHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHH
Q 004720 295 IKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVF 373 (733)
Q Consensus 295 l~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l 373 (733)
+.+++.+.+. .+.++.+++..+.++...|++++|+..+.+++...|.....+...+.++...+. +.|...+++.+
T Consensus 155 ~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 155 KACYLKAIET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888875 356677778889999999999999999999886666666667777777776665 56666655432
Q ss_pred HhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhc
Q 004720 374 LGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRS 453 (733)
Q Consensus 374 ~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~ 453 (733)
+.+|++...+...+.........+..++.+. +.....+.....+.+.|..+.+.
T Consensus 231 ------------------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 231 ------------------------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp ------------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHTCSSCHHHHHHHHHHHHHH
T ss_pred ------------------------hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHc
Confidence 2233333333333333333333333333322 11110011122455689999999
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEG 532 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~ 532 (733)
|+|++|+++|+.++...|.+ ...+.+++.+|...|++++|++.++++++++| ++.+.+.+..++...|++++
T Consensus 285 g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred CCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999987754 35789999999999999999999999999999 88899999999999999999
Q ss_pred HHHHHHHHHhccCCChHHHHH
Q 004720 533 AINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 533 Al~~l~~~~~~~~~~~~lL~l 553 (733)
|++.++.+....+..++.+..
T Consensus 358 A~~~~~~a~~~~p~~~~a~~~ 378 (388)
T 1w3b_A 358 ALMHYKEAIRISPTFADAYSN 378 (388)
T ss_dssp HHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHh
Confidence 999999999987766664443
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5.2e-21 Score=211.06 Aligned_cols=407 Identities=14% Similarity=0.107 Sum_probs=291.0
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......|..++..|+++.|..+|+++++..+. . ...+..++.++...|++++|+.+++++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------N------YIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--------c------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3456777899999999999999999999976431 1 3456677889999999999999999999998
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc---ccchhhhhhhhcHHHHHHHHHHHHhc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA---RTREETTELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~---~~~~~~~~~~el~~~~l~~La~~yl~ 287 (733)
|..+ .+++.+|..+...|+ +++|+.+|++++++ .+.+. ....... .......+..+|.+|..
T Consensus 91 p~~~-------~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 91 MDFT-------AARLQRGHLLLKQGK---LDEAEDDFKKVLKS---NPSENEEKEAQSQLI--KSDEMQRLRSQALNAFG 155 (450)
T ss_dssp TTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHTS---CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCcH-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHhc---CCCChhhHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 8765 357888999999999 99999999999887 44221 1000000 00112235667888999
Q ss_pred cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhH
Q 004720 288 KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGA 366 (733)
Q Consensus 288 ~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~ 366 (733)
.|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+..++...+.....+...+.+|...+. +.|.
T Consensus 156 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999886 456778889999999999999999999999986555556667777888877665 5666
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHH
Q 004720 367 ETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNC 446 (733)
Q Consensus 367 ~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~ 446 (733)
..++.+ + +..|++...+.. +..+.. + ....+.
T Consensus 232 ~~~~~~----------------------~--~~~p~~~~~~~~----~~~~~~---~-----------------~~~~~~ 263 (450)
T 2y4t_A 232 SEVREC----------------------L--KLDQDHKRCFAH----YKQVKK---L-----------------NKLIES 263 (450)
T ss_dssp HHHHHH----------------------H--HHCTTCHHHHHH----HHHHHH---H-----------------HHHHHH
T ss_pred HHHHHH----------------------H--HhCCChHHHHHH----HHHHHH---H-----------------HHHHHH
Confidence 666543 2 234444332210 000000 0 012347
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
|..+++.|+|++|+++|+.++...|.+. .....++.+++.+|.++|++++|+++++++++++| ++...+.++.++.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIA---EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSH---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 9999999999999999999999888764 34578899999999999999999999999999999 8999999999999
Q ss_pred hcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH-HHhhcC
Q 004720 526 QKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTI-LTQETG 604 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l-~~~~~~ 604 (733)
..|++++|++.++.+....+.+++....-.......+.. ....+...++ .... .....+...+|....- .++...
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~~~~y~~lg-~~~~-~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS--QKRDYYKILG-VKRN-AKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--HSCCSGGGSC-SSTT-CCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc--cchhHHHHhC-CCcc-CCHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999998877776443332211111110 0001111111 1111 1245566777754322 244322
Q ss_pred Ch------hHHHHHHHHHHHHhhhccc
Q 004720 605 NE------SEVLKYMKRAHARTSEIGA 625 (733)
Q Consensus 605 ~~------~~~l~~~~~A~~~l~~~~~ 625 (733)
+. .+.++.+..|++.+++...
T Consensus 417 ~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 417 NEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 21 3367788999999887743
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.3e-20 Score=208.70 Aligned_cols=388 Identities=11% Similarity=-0.029 Sum_probs=285.9
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
+.+......|+.+++.|+|+.|..+|++|++..| + ...+..++.+++..|+++.|+.++++++.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---------~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE---------D------PVFYSNLSACYVSVGDLKKVVEMSTKALEL 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---------c------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 4567788999999999999999999999998642 1 245667799999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccc-h-----------------------
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTR-E----------------------- 265 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~-~----------------------- 265 (733)
.|..+. +++.+|..+...|+ +++|+..|++++++ ++.+.... .
T Consensus 69 ~p~~~~-------~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (514)
T 2gw1_A 69 KPDYSK-------VLLRRASANEGLGK---FADAMFDLSVLSLN---GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT 135 (514)
T ss_dssp CSCCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHS---SSCCGGGTHHHHHHHHHHHHHHHHTTC------
T ss_pred ChHHHH-------HHHHHHHHHHHHhh---HHHHHHHHHHHHhc---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987663 58889999999999 99999999999887 32111000 0
Q ss_pred ---------------------hhhhh--------------------hhcHHHHHHHHHHHHhc---cCcHHHHHHHHHHH
Q 004720 266 ---------------------ETTEL--------------------KGLKFKTLRFISAIHLQ---KGEYESVIKCVRVL 301 (733)
Q Consensus 266 ---------------------~~~~~--------------------~el~~~~l~~La~~yl~---~~~~ekAl~~l~~a 301 (733)
..+.. .+.....+..++.+++. .|++++|+.+++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp ---------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred HHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00000 01114466777888776 89999999999888
Q ss_pred Hc-----c--CCCC---CCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHH
Q 004720 302 RE-----G--SFDG---GDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAK 370 (733)
Q Consensus 302 ~~-----~--~~~~---~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk 370 (733)
.+ . .++. .+.++..++..+.++...|++++|+..+...+...+. ...+...+..|...+. +.|...++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77 3 1100 0233456688999999999999999999998855555 6777788888887776 77777777
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASIL 450 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~ 450 (733)
+++ +..|++...+...+.........+.....+. +.....+.....+.+.|..+
T Consensus 295 ~~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 295 KAL------------------------KLDSNNSSVYYHRGQMNFILQNYDQAGKDFD--KAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp HHH------------------------TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH--HHHHTCSSCSHHHHHHHHHT
T ss_pred HHh------------------------hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHhChhhHHHHHHHHHHH
Confidence 553 2223233333222222222222222222222 00000000112445689999
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH------HHHHHHHH
Q 004720 451 FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA------SAFLKFKI 523 (733)
Q Consensus 451 ~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~------t~~~~~ki 523 (733)
++.|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|.++++++++.+| ++. ..+.+..+
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999887754 35789999999999999999999999999988 543 78889999
Q ss_pred HHh---cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 524 YLQ---KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 524 ~l~---~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
+.. .|++++|++.++.+....+.+++.+...+......|+.+.|+..++..++..+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 999 99999999999999998887888777777888899999999999999999543
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=2.3e-19 Score=205.61 Aligned_cols=461 Identities=9% Similarity=-0.023 Sum_probs=316.3
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......++.+.+.|+++.|...|++++...+ +. ..+...+.++...|++++|+..++++...
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---------~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 146 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITG---------NP------NDAFWLAQVYCCTGDYARAKCLLTKEDLY- 146 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---------CH------HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC---------Cc------hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-
Confidence 345567788999999999999999999986542 11 12234688899999999999999998754
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc----cc-hhhhhhhhcHHHHHHHHHHHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR----TR-EETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~----~~-~~~~~~~el~~~~l~~La~~y 285 (733)
+..+ .+++.+|..+...|+ +++|...|++. .+.... .. .......+....++..++.+|
T Consensus 147 ~~~~-------~~~~~l~~~~~~~g~---~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 147 NRSS-------ACRYLAAFCLVKLYD---WQGALNLLGET------NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp GTCH-------HHHHHHHHHHHHTTC---HHHHHHHHCSS------CTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred ccch-------hHHHHHHHHHHHHhh---HHHHHHHHhcc------CCccccccccccccccccccchhHHHHHHHHHHH
Confidence 2333 257788999999999 99999877741 111100 00 000000122355899999999
Q ss_pred hccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH--------------------------------------HHHHHhcC
Q 004720 286 LQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA--------------------------------------MKAWLGLG 327 (733)
Q Consensus 286 l~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk--------------------------------------~~il~~~g 327 (733)
...|++++|+.+++.+.+. ++.++...... +..+.+.|
T Consensus 211 ~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMV----DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHcCCHHHHHHHHHHHHHh----CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999875 34444443332 22333557
Q ss_pred ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHH
Q 004720 328 RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAA 406 (733)
Q Consensus 328 ~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~ 406 (733)
++++|+..+..++..+ .....+...+..|...+. +.|...+++++. ..|++...
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~ 341 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLE-KSSDLLLCKADTLFVRSRFIDVLAITTKILE------------------------IDPYNLDV 341 (597)
T ss_dssp HHHHHHHHHHTSTTGG-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HCTTCCTT
T ss_pred hHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------------cCcccHHH
Confidence 8899999998887543 345556777888877776 667777765532 11212222
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHH
Q 004720 407 VKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRV 486 (733)
Q Consensus 407 l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~ 486 (733)
+...+..+......+...+.+. ...+........+...|..+++.|+|++|+++|+.++...|.+ ...+..
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 412 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISN--DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-------GPAWIG 412 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH--HHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH--HHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHH
Confidence 2112222222222222222222 1101001111233348999999999999999999999887654 357889
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHH
Q 004720 487 LCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 487 la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~ 565 (733)
++.+|.+.|++++|++.++++.+.+| ++.+.+.+..++.+.|++++|++.++.+....+.++..+..-+....+.|+.+
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999 88999999999999999999999999999888778887766677888899999
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhcccCccCCCccccchhhHHHHhh
Q 004720 566 VAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSEIGANCFFGTEEAGRREQNWLAVM 645 (733)
Q Consensus 566 ~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~~~~~~~~~~~~~~~~E~~Wf~~~ 645 (733)
.|+..++..++........|.....++.+++... ...|+.++.+.+++++...-++ +.. +
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~--------------~~~-----~ 552 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAY-RKLKMYDAAIDALNQGLLLSTN--------------DAN-----V 552 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSSC--------------CHH-----H
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCC--------------ChH-----H
Confidence 9999999998854321122443344444444443 3357888999999998865221 111 1
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHHHccccCCchhhh
Q 004720 646 SWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEEN 684 (733)
Q Consensus 646 awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~~~~~ 684 (733)
-+++|.-+...++++.+.++|.-+.+ +.|.+.....
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~ 588 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLA---ISPNEIMASD 588 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCChHHHH
Confidence 24666667778889999999988877 5777755433
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=5.6e-20 Score=207.29 Aligned_cols=370 Identities=12% Similarity=0.008 Sum_probs=262.7
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNR 205 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~r 205 (733)
......+......|+.+++.|+++.|..+|++|++..|. . ...+..++.++...|++++|+..+++
T Consensus 19 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~------~~~~~~la~~~~~~g~~~~A~~~~~~ 84 (537)
T 3fp2_A 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--------E------PVFYSNISACYISTGDLEKVIEFTTK 84 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--------C------cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444556788899999999999999999999999987541 1 25666778899999999999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC-------------------------
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE------------------------- 260 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~------------------------- 260 (733)
+..+.|..+. +++.+|..+...|+ +++|+..|+ ++.+.......
T Consensus 85 al~~~p~~~~-------~~~~la~~~~~~g~---~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 153 (537)
T 3fp2_A 85 ALEIKPDHSK-------ALLRRASANESLGN---FTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153 (537)
T ss_dssp HHHHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhcCCchHH-------HHHHHHHHHHHcCC---HHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999888664 46677777777777 777777663 33210000000
Q ss_pred ---c------------------------------------------------------------------------ccch
Q 004720 261 ---A------------------------------------------------------------------------RTRE 265 (733)
Q Consensus 261 ---~------------------------------------------------------------------------~~~~ 265 (733)
. ...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 0000
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
..+......+.++..++.+|...|++++|+.+++.+.+.. +. +..++..+.++...|++++|+..+...+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH----PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Confidence 0011112234578889999999999999999999998863 33 677789999999999999999999999866666
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
...++...+.+|...+. +.|.+.+++++. ..|++...+...+.....+...+...
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------------LNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------------hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66677788888877766 666666665432 23333333333444433333333333
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC----------
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL---------- 494 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l---------- 494 (733)
+.+. +.....+....++.+.|..+++.|+|++|+++|+.++...|.+... ......+.+++.+|...
T Consensus 365 ~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 365 AFFN--ETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI-HVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHH--HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC-SSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHH--HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh-HHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 3333 1111011112234458999999999999999999999887754322 23344567888999999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
|++++|+++++++++.+| ++...+.+..++...|++++|++.++.+....+..++.+.
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999 8999999999999999999999999999999877666433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.9e-20 Score=203.89 Aligned_cols=364 Identities=12% Similarity=-0.009 Sum_probs=267.3
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
......|..++..|+++.|..+|++|++..|. . ...+..++.++..+|++++|+.+++++..+.|.
T Consensus 40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 40 VFYSNLSACYVSVGDLKKVVEMSTKALELKPD--------Y------SKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--------H------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667799999999999999999999986431 1 256667789999999999999999999988764
Q ss_pred CchhHHH------------------------------------------------------------------------H
Q 004720 213 LFEHYKS------------------------------------------------------------------------L 220 (733)
Q Consensus 213 ~~~~~~~------------------------------------------------------------------------L 220 (733)
....... -
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (514)
T 2gw1_A 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNE 185 (514)
T ss_dssp CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcH
Confidence 3221110 1
Q ss_pred HHHHHHHhHHHHh---cCCCCCHHHHHHHHHHHHHHHh----cCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 221 ANQYLTFAKSALS---KNETNSLNDALKLMNEALELCE----KGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 221 a~~~~~~G~~~~~---~~~~~~~e~A~~~l~~Alel~~----~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
...++..|..++. .|+ +++|+.+|+++++..+ +.+.+. ...+....++..+|.+|...|++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPES---YDKADESFTKAARLFEEQLDKNNEDE-------KLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTH---HHHHHHHHHHHHHHHHHHTTTSTTCH-------HHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHhhhhhccCcccc-------ccChHHHHHHHHHHHHHHHCCCHHH
Confidence 5667778888776 788 9999999999999522 222111 1123345689999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHH
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGV 372 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~ 372 (733)
|+.+++.+.+.. +. +..++..+.++...|++++|+..+...+...+.....+...+.+|...+. +.|...++.+
T Consensus 256 A~~~~~~~l~~~----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 256 AHEDIKKAIELF----PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHC----CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhC----cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998863 34 77778999999999999999999999986666566677778888887766 6777777755
Q ss_pred HHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh
Q 004720 373 FLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR 452 (733)
Q Consensus 373 l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k 452 (733)
+. ..|++...+...+.........+...+.+. +.....+.....+++.|..+++
T Consensus 331 ~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 331 KE------------------------LDPENIFPYIQLACLAYRENKFDDCETLFS--EAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp HH------------------------TCSSCSHHHHHHHHHTTTTTCHHHHHHHHH--HHHHHSTTCSHHHHHHHHHHHH
T ss_pred HH------------------------hChhhHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHcccCHHHHHHHHHHHHH
Confidence 32 122222222122222111111122222221 0000001112345568999999
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG---LSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN 528 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~---l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g 528 (733)
.|+|++|+++|+.++...|.+... ...+..+.+++.+|.. .|++++|+++++++++++| ++.+.+.+..++...|
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGI-YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSC-SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 999999999999999887755321 2345689999999999 9999999999999999999 8899999999999999
Q ss_pred CHHHHHHHHHHHHhccCCChHHHH
Q 004720 529 DQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
++++|++.++.+....+.+++.+.
T Consensus 464 ~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 464 DIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999877666443
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.3e-18 Score=182.24 Aligned_cols=308 Identities=9% Similarity=-0.013 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+...+..+...|++++|+..++++....|..+. +++++|..+...|+ +++|+.+|++++++ .|.+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~~ 70 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI-------AYYRRATVFLAMGK---SKAALPDLTKVIAL---KMDF 70 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH-------HHHHHHHHHHHccC---HHHHHHHHHHHHHh---CCCc
Confidence 45667788999999999999999999999887653 58889999999999 99999999999998 4422
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCC---CCCcHHHHH------------HHHHHh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGD---HHASLPVLA------------MKAWLG 325 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~---~~p~~~~lk------------~~il~~ 325 (733)
..++..+|.+|...|++++|+.+++.+.+. .+ .++...+.. +.++..
T Consensus 71 --------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 71 --------------TAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp --------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------chHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 137888999999999999999999999875 23 344444333 688999
Q ss_pred cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcch
Q 004720 326 LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSE 404 (733)
Q Consensus 326 ~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~ 404 (733)
.|++++|+..+...+...+....++...+.+|...+. +.|...++ +.+ +..|+++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~----------------------~~~--~~~~~~~ 188 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK----------------------AAS--KLKSDNT 188 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------------HHH--TTCSCCH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHH----------------------HHH--HhCCCCH
Confidence 9999999999999986666666666777777766555 44444444 444 3455443
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhh----
Q 004720 405 AAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILR---- 480 (733)
Q Consensus 405 ~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~---- 480 (733)
.. +.+.|..++..|+|++|+++|+.++...|.+.......
T Consensus 189 ~~------------------------------------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 189 EA------------------------------------FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 232 (359)
T ss_dssp HH------------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HH------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 22 22478899999999999999999999988664211000
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHH----HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 481 -AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIAS----AFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 481 -akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t----~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
......++.++...|++++|.+.++++++.+| ++.. .+.+..++...|++++|++.++.+....+.+++.+..-
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 11234669999999999999999999999999 5533 44578999999999999999999999888788877777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 555 AHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 555 ~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
+......|+.+.|+..++..++..+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7888899999999999999998443
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=7e-19 Score=201.53 Aligned_cols=415 Identities=11% Similarity=-0.001 Sum_probs=285.3
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE 215 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~ 215 (733)
...|..+...|+++.|...|++++..- ++ ...+...+.++...|++++|+..+++. .|....
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~ 182 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLYN---------RS------SACRYLAAFCLVKLYDWQGALNLLGET---NPFRKD 182 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGGG---------TC------HHHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC--
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhccc---------cc------hhHHHHHHHHHHHHhhHHHHHHHHhcc---CCcccc
Confidence 458999999999999999998876421 11 235556688999999999999999863 232200
Q ss_pred ------------hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch------------------
Q 004720 216 ------------HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE------------------ 265 (733)
Q Consensus 216 ------------~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~------------------ 265 (733)
....-+.+++.+|..+...|+ +++|+.+|+++++. ++.+.....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN---FDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp --------CCCSSCCHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHH
Confidence 001235678899999999999 99999999999987 443221000
Q ss_pred ------hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 266 ------ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 266 ------~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
..+........++..++..|...|++++|+..++.+.+. +.++..++..+.++.+.|++++|+..+..+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-----EKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 000001111223444466777888999999999888763 356777899999999999999999999998
Q ss_pred hhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 340 VEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 340 l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
+...+.....+...+..|...+. +.|...++.++ +..|++...+...+....+..
T Consensus 332 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV------------------------DRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HHCTTSHHHHHHHHHHHHHTT
T ss_pred HHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------------------hhCcccHHHHHHHHHHHHHhc
Confidence 85545455556667777776665 56666665443 112222222222222222222
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
..+...+.|. +...........+...|..+.+.|+|++|+++|+.++...|.+ ...+..++.+|.+.|+++
T Consensus 388 ~~~~A~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 388 KISEARRYFS--KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-------HLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp CHHHHHHHHH--HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-------SHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCCHH
Confidence 2233333332 0000000111122348999999999999999999999887744 356889999999999999
Q ss_pred HHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CCC----hHHHHHHHHHHHHcCCHHHHHHH
Q 004720 499 RAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL---DFT----TDFLSLAAHEAVACQALSVAVAA 570 (733)
Q Consensus 499 ~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~---~~~----~~lL~la~~~a~~~~~~~~a~~a 570 (733)
+|.++++++++.+| ++.+.+.+..++.+.|++++|++.++.+.... +.+ +..+..-+....+.|+.+.|+..
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999 89999999999999999999999999998763 112 34555556777889999999999
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 004720 571 LSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHART 620 (733)
Q Consensus 571 L~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l 620 (733)
++.+++..+.+ + .++..+.. +....|+.++...+|+++.+.-
T Consensus 539 ~~~~~~~~p~~---~----~~~~~l~~-~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 539 LNQGLLLSTND---A----NVHTAIAL-VYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHSSCC---H----HHHHHHHH-HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCC---h----HHHHHHHH-HHHHhCCHHHHHHHHHHHHhcC
Confidence 99999854322 2 22212222 2344678889999999998753
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.1e-17 Score=188.66 Aligned_cols=473 Identities=12% Similarity=0.044 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 179 LLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 179 ~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
....+..++..+...|++++|+..|++++.+.|..+ ..++++|.++...|+ +++|+..|++++++ +|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~---~~~A~~~~~~al~~---~p 90 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-------VFYSNISACYISTGD---LEKVIEFTTKALEI---KP 90 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHhc---CC
Confidence 456788889999999999999999999999998866 358899999999999 99999999999998 54
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+ ..++..+|.+|...|++++|+..++.+ .. +|......+..+...+...+|+..+..
T Consensus 91 ~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (537)
T 3fp2_A 91 DH--------------SKALLRRASANESLGNFTDAMFDLSVL-SL-------NGDFDGASIEPMLERNLNKQAMKVLNE 148 (537)
T ss_dssp TC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHH-C------------------CHHHHHHHHHHHHHHHH
T ss_pred ch--------------HHHHHHHHHHHHHcCCHHHHHHHHHHH-hc-------CCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 32 127888999999999999999999744 32 222222223344444555677777766
Q ss_pred hhhccC-CchHH--HHhHHHHHHHhch-hhhHHH-------------HHHHHHhhhccCC-------chHHHHHHHHHHh
Q 004720 339 MVEIKG-IPECI--WVSAVEAYFQAAG-TAGAET-------------AKGVFLGLLGRCH-------VSAKAAVRMAHRV 394 (733)
Q Consensus 339 ~l~~~~-~~~~~--~ls~~~ly~~~~~-~~a~~~-------------lk~~l~~ll~~~~-------~~~~~a~~~l~~~ 394 (733)
++...+ ..... ....+..|..... ..++.. +...+..+..... .....++.++++.
T Consensus 149 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 653211 00000 0000111111000 000000 1111110000000 0135667777777
Q ss_pred hcCCCCCcchHHHHHHH-------HHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 004720 395 AGDEGDGVSEAAVKLRA-------KAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSM 467 (733)
Q Consensus 395 l~~~~sp~~~~~l~~ka-------~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL 467 (733)
+ +..|+++..+...+ .........+.....+. ......+. ...+...|..++..|+|++|+++|+.++
T Consensus 229 l--~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 229 L--SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp H--C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred H--HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH--HHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 7 56776655432222 22222222233333333 11111111 3445568999999999999999999999
Q ss_pred ccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 468 LYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 468 ~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
...|.+ ..++.+++.+|...|++++|++.++++++++| ++...+.+..++...|++++|++.++.+....+.
T Consensus 304 ~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 304 DLNPEY-------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 987744 45789999999999999999999999999999 8889999999999999999999999999998887
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhc---------CChhHHHHHHHHHH
Q 004720 547 TTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQET---------GNESEVLKYMKRAH 617 (733)
Q Consensus 547 ~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~---------~~~~~~l~~~~~A~ 617 (733)
+++.+...+......|+.+.|+..++..++..+.+......+... -....++.+.+ |+.++.+.+|+++.
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-IGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH-HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH-HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 888777777888899999999999999988554432222111111 11112222111 55677888888888
Q ss_pred HHhhhcccCccCCCccccchhhHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHccccCCchhhhHHHHHHHHHHHHH
Q 004720 618 ARTSEIGANCFFGTEEAGRREQNWLAVMSWNFGTNCGKEKKYELCMEFLRLASEFYGIRVDGQVEENSITVCKSLILTVS 697 (733)
Q Consensus 618 ~~l~~~~~~~~~~~~~~~~~E~~Wf~~~awN~a~~~~~~~~~~~~~~f~~la~~~~~l~p~~~~~~~~~~~c~~ll~~~~ 697 (733)
..-++. . ..-+|+|.-+...++++.+.++|.-+.+ +.|.......... +..+
T Consensus 456 ~~~p~~--------------~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~----~~~~-- 507 (537)
T 3fp2_A 456 ELDPRS--------------E-----QAKIGLAQLKLQMEKIDEAIELFEDSAI---LARTMDEKLQATT----FAEA-- 507 (537)
T ss_dssp HHCTTC--------------H-----HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC--CHHHHHHHH----HHHH--
T ss_pred HhCCCC--------------H-----HHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHh----HHHH--
Confidence 652211 0 1226777778888899999999998888 5565544322111 1111
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHhhccc
Q 004720 698 AMIASENQKQIALMNNEVKQALELLDRAGKV 728 (733)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (733)
+.+.... +.-|.....+...+.-|+..|.+
T Consensus 508 ~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~ 537 (537)
T 3fp2_A 508 AKIQKRL-RADPIISAKMELTLARYRAKGML 537 (537)
T ss_dssp HHHHHHH-HTC--------------------
T ss_pred HHHHHhc-cccHHHHHHHhhHHHHHhhccCC
Confidence 2222222 44455555677777777776653
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.8e-18 Score=181.39 Aligned_cols=293 Identities=9% Similarity=-0.045 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+++..+|..+...|+++.|+..++++....|..+.. ++..|..+...|+ +++|+.+++++++. .|.+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~---~~~A~~~~~~~~~~---~~~~ 89 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASC-------LPVHIGTLVELNK---ANELFYLSHKLVDL---YPSN 89 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTT-------HHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhh-------HHHHHHHHHHhhh---HHHHHHHHHHHHHh---CcCC
Confidence 467778999999999999999999999999887654 5566677778888 99999999999998 5422
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccC-cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKG-EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~-~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
. .++..++.+|...| ++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...
T Consensus 90 ~--------------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 151 (330)
T 3hym_B 90 P--------------VSWFAVGCYYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAVESEHDQAMAAYFTA 151 (330)
T ss_dssp T--------------HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2 27888999999999 999999999999886 4667888899999999999999999999998
Q ss_pred hhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 340 VEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 340 l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
+...+.....+...+..|...+. +.|.+.++ +.+ +..|++..
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------------~al--~~~~~~~~------------- 194 (330)
T 3hym_B 152 AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS----------------------QAL--SIAPEDPF------------- 194 (330)
T ss_dssp HHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH----------------------HHH--TTCTTCHH-------------
T ss_pred HHhccccHHHHHHHHHHHHHHhhHHHHHHHHH----------------------HHH--HhCCCChH-------------
Confidence 85555444555556666665544 44444443 444 34453321
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch--hhhhhHHHHHHHHHHHHhCCC
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE--NRILRAKSFRVLCLCYLGLSL 496 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--~~~~~akl~r~la~cyl~l~~ 496 (733)
.+.+.|..++..|+|++|+++|+.++...+.... ..+..+.++.+++.+|..+|+
T Consensus 195 -----------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 195 -----------------------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred -----------------------HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 2234789999999999999999999987653211 113556899999999999999
Q ss_pred HHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH-HHHHcCCH
Q 004720 497 IDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH-EAVACQAL 564 (733)
Q Consensus 497 ~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~-~a~~~~~~ 564 (733)
+++|+++++++++++| ++...+.+..++...|++++|+++++++....+.++.....-+. .....|+.
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999 88999999999999999999999999998887767764433322 22344444
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=5.2e-19 Score=196.78 Aligned_cols=377 Identities=12% Similarity=-0.051 Sum_probs=227.1
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
..+-..|..++..|+++.|+.+|++|+++.+.......++. ....+.+.|.++..+|++++|+.+++++..+.+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-----~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-----SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-----THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 34556799999999999999999999998765332111111 1345667899999999999999999999999775
Q ss_pred Cch-hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH---hcc
Q 004720 213 LFE-HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH---LQK 288 (733)
Q Consensus 213 ~~~-~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y---l~~ 288 (733)
.+. .....+.++.++|..++..+.++ |++|+.+|++|+++ +|.+.. .+..++.++ ...
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-y~~A~~~~~kal~~---~p~~~~--------------~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQ-NERAKVCFEKALEK---KPKNPE--------------FTSGLAIASYRLDNW 188 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHH---STTCHH--------------HHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHh---CCCCHH--------------HHHHHHHHHHHhcCc
Confidence 321 12234567888888776544221 99999999999999 553321 344455554 345
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-h
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-T 363 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~ 363 (733)
+++++|+..++.+.++ ++.++......+..+.. .|++++|+..+...+...+....++.+.+.+|...+. +
T Consensus 189 ~~~~~al~~~~~al~l----~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRL----NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp CCCCCTHHHHHHHHHH----CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhhc----CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH
Confidence 6778888888888775 34556555555544433 3677888888888886666666677778888877766 6
Q ss_pred hhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH-------------------HHhhhHHHHH
Q 004720 364 AGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV-------------------AELVSDERVL 424 (733)
Q Consensus 364 ~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l-------------------~~l~~~e~v~ 424 (733)
.|.+.+++++. .+|. +...+...+... ......+...
T Consensus 265 ~A~~~~~~al~-----~~p~-------------------~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 265 KAIELLKKALE-----YIPN-------------------NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320 (472)
T ss_dssp HHHHHHHHHHH-----HSTT-------------------CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hCCC-------------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Confidence 77777765532 1222 211111111000 0000111111
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH-HHHhCCCHHHHHHH
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL-CYLGLSLIDRAQEY 503 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~-cyl~l~~~~~A~e~ 503 (733)
..+. ............+.+.|..+.+.|+|++|+++|++++...|.+. ....++.+++. .+..+|++++|+++
T Consensus 321 ~~~~--~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 321 AHLK--KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV----AKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHH--HHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHH--HHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111 11111111112344589999999999999999999998877542 34456677764 45688999999999
Q ss_pred HHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 504 ITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 504 ~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
|.+|++++| +..... ..+.+.+.+++.....+.+++.+..-+......|+.+.|+..+++-++
T Consensus 395 y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 395 FIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999988 432111 112223333444444444555444444555566677777777766666
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=2.7e-17 Score=181.28 Aligned_cols=310 Identities=10% Similarity=0.015 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+...+..+...|++++|+..++++....|..+ ..++.+|..++..|+ +++|+.+|++++++ +|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~l~~~~~~~g~---~~~A~~~~~~al~~---~p~ 92 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY-------IAYYRRATVFLAMGK---SKAALPDLTKVIQL---KMD 92 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH-------HHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCC
Confidence 35666778899999999999999999999888754 458889999999999 99999999999998 442
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC---cHH------------HHHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA---SLP------------VLAMKAWL 324 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p---~~~------------~lk~~il~ 324 (733)
+ ..++..+|.+|...|++++|+.+++.+... .+.++ ..+ +..+.++.
T Consensus 93 ~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 93 F--------------TAARLQRGHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 237888999999999999999999999875 23333 332 33466788
Q ss_pred hcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcc
Q 004720 325 GLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVS 403 (733)
Q Consensus 325 ~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~ 403 (733)
..|++++|+..+..++...+....++...+.+|...+. +.|...++.+ + +..|++
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~--~~~~~~ 210 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA----------------------S--KLKNDN 210 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH----------------------H--HHHCSC
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH----------------------H--HhCCCC
Confidence 99999999999999886666566667777787776665 5555555532 1 112222
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhh----
Q 004720 404 EAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRIL---- 479 (733)
Q Consensus 404 ~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~---- 479 (733)
.. .+.+.|..++..|+|++|+++|+.++...|.+......
T Consensus 211 ~~------------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 211 TE------------------------------------AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254 (450)
T ss_dssp HH------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HH------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 11 22247899999999999999999999988866321100
Q ss_pred -hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 480 -RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI----ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 480 -~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~----~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.......++.++...|++++|+++++++++++| ++ ...+.+..++.+.|++++|++.++.+....+.+++.+..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 011124559999999999999999999999999 54 356678999999999999999999999887777887777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 554 AAHEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 554 a~~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
-+......|+.+.|+..++..++..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 778888999999999999999994433
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.3e-18 Score=177.81 Aligned_cols=295 Identities=10% Similarity=-0.035 Sum_probs=228.8
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
.....|..++..|+++.|...|+++++..+. . ...+...+.+++..|++++|+..++++....|..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--------H------ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------C------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 3456688888899999999999999876431 0 1234445778889999999999999999998887
Q ss_pred chhHHHHHHHHHHHhHHHHhcC-CCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHH
Q 004720 214 FEHYKSLANQYLTFAKSALSKN-ETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYE 292 (733)
Q Consensus 214 ~~~~~~La~~~~~~G~~~~~~~-~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~e 292 (733)
+. +++.+|..+...| + +++|+.+|++++++ .+.+. .++..+|.+|...|+++
T Consensus 90 ~~-------~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~---~~~~~--------------~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 90 PV-------SWFAVGCYYLMVGHK---NEHARRYLSKATTL---EKTYG--------------PAWIAYGHSFAVESEHD 142 (330)
T ss_dssp TH-------HHHHHHHHHHHSCSC---HHHHHHHHHHHHTT---CTTCT--------------HHHHHHHHHHHHHTCHH
T ss_pred HH-------HHHHHHHHHHHhhhh---HHHHHHHHHHHHHh---CCccH--------------HHHHHHHHHHHHccCHH
Confidence 64 4788899999999 8 99999999999987 43221 26888999999999999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHH
Q 004720 293 SVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKG 371 (733)
Q Consensus 293 kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~ 371 (733)
+|+.+++.+.+. .+.++...+..+.++...|++++|+..+...+...+....++...+.+|...+. +.|...++.
T Consensus 143 ~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 143 QAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999886 356677888999999999999999999999986666556666777777776665 555555554
Q ss_pred HHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHH
Q 004720 372 VFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILF 451 (733)
Q Consensus 372 ~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~ 451 (733)
++...-....+ ...|.. ..++++.|..++
T Consensus 219 a~~~~~~~~~~---------------~~~~~~------------------------------------~~~~~~la~~~~ 247 (330)
T 3hym_B 219 ALEKIKAIGNE---------------VTVDKW------------------------------------EPLLNNLGHVCR 247 (330)
T ss_dssp HHHHHTTTSCS---------------CTTTTC------------------------------------CHHHHHHHHHHH
T ss_pred HHHHhhhcccc---------------ccccHH------------------------------------HHHHHHHHHHHH
Confidence 32111000000 000101 123446899999
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH-HhcCC
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIY-LQKND 529 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~-l~~gd 529 (733)
+.|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|.++++++++++| ++...+.+..++ ...|+
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQN-------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HhcCHHHHHHHHHHHHhhCccc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 9999999999999999987754 45789999999999999999999999999999 888888888877 56666
Q ss_pred HH
Q 004720 530 QE 531 (733)
Q Consensus 530 ~e 531 (733)
.+
T Consensus 321 ~~ 322 (330)
T 3hym_B 321 SE 322 (330)
T ss_dssp --
T ss_pred hh
Confidence 54
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=7.7e-18 Score=180.21 Aligned_cols=292 Identities=11% Similarity=-0.007 Sum_probs=206.6
Q ss_pred HHHHccCHHHHHH-HHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhh
Q 004720 189 TAWEVLEQNLAIT-LLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREET 267 (733)
Q Consensus 189 ~a~~~g~~~~A~~-~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~ 267 (733)
++...|+++.|+. .+.++..+.|..|.. .+..++++|..++..|+ +++|+.+|++++++ .|.+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~---~p~~------- 97 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGD---LPNAVLLFEAAVQQ---DPKH------- 97 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTC---HHHHHHHHHHHHHS---CTTC-------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCccc---chHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh---CCCC-------
Confidence 5557799999999 999999988876521 12457899999999999 99999999999987 4422
Q ss_pred hhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCch
Q 004720 268 TELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPE 347 (733)
Q Consensus 268 ~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~ 347 (733)
..++..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...+...
T Consensus 98 -------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 98 -------MEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred -------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 237889999999999999999999999886 456788889999999999999999999998885444333
Q ss_pred HHHHh----------------HHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 004720 348 CIWVS----------------AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRA 411 (733)
Q Consensus 348 ~~~ls----------------~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka 411 (733)
..+.. +..++ ..+. ...++..+++.+ +..|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------~~~A~~~~~~a~--~~~p~~~------- 215 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSL---------------------FLEVKELFLAAV--RLDPTSI------- 215 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHH---------------------HHHHHHHHHHHH--HHSTTSC-------
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hccc---------------------HHHHHHHHHHHH--HhCcCcc-------
Confidence 32211 11111 1111 111222222222 1112100
Q ss_pred HHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHH
Q 004720 412 KAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCY 491 (733)
Q Consensus 412 ~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cy 491 (733)
....+.+.|..+++.|+|++|+++|+.++...|.+ ..++.+++.+|
T Consensus 216 ---------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~ 261 (368)
T 1fch_A 216 ---------------------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-------YLLWNKLGATL 261 (368)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHH
T ss_pred ---------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-------HHHHHHHHHHH
Confidence 11234458999999999999999999999887644 45789999999
Q ss_pred HhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----------hHHHHHHHHHHH
Q 004720 492 LGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFT-----------TDFLSLAAHEAV 559 (733)
Q Consensus 492 l~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~-----------~~lL~la~~~a~ 559 (733)
..+|++++|+++++++++++| ++...+.+..++...|++++|++.++++....+.+ ++....-+....
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 999999999999999999999 88889999999999999999999999988876544 454444445555
Q ss_pred HcCCHHHHHHHHH
Q 004720 560 ACQALSVAVAALS 572 (733)
Q Consensus 560 ~~~~~~~a~~aL~ 572 (733)
..|+.+.+.....
T Consensus 342 ~~g~~~~A~~~~~ 354 (368)
T 1fch_A 342 MLGQSDAYGAADA 354 (368)
T ss_dssp HHTCGGGHHHHHT
T ss_pred HhCChHhHHHhHH
Confidence 6677776654443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=2.9e-18 Score=183.54 Aligned_cols=290 Identities=10% Similarity=-0.008 Sum_probs=211.6
Q ss_pred HHhccCCcchHHH-HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHH
Q 004720 141 VWHDLKKYDLASG-CFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS 219 (733)
Q Consensus 141 ~~~~~g~~~~A~~-~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~ 219 (733)
.+.-.|+|+.|.. +|++|+...+. .+... ...+..++..+...|++++|+.+++++..+.|..+.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~------~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 99 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEE------NPLRD----HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME---- 99 (368)
T ss_dssp ------------CHHHHCCCCCCSS------CTTTT----CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH----
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCC------Ccccc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----
Confidence 4445678888888 88777754321 11000 123456788999999999999999999999887653
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
+++++|..+...|+ +++|+.+|++++++ .|.+ ..++..+|.+|...|++++|+.+++
T Consensus 100 ---~~~~l~~~~~~~g~---~~~A~~~~~~al~~---~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 100 ---AWQYLGTTQAENEQ---ELLAISALRRCLEL---KPDN--------------QTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp ---HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHCcC---HHHHHHHHHHHHhc---CCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58889999999999 99999999999998 4422 1278889999999999999999999
Q ss_pred HHHccCCCCCCCCCcHHHH---------------HHHHHHhcCChHHHHHHHHHhhhccCC--chHHHHhHHHHHHHhch
Q 004720 300 VLREGSFDGGDHHASLPVL---------------AMKAWLGLGRYNEAELELRGMVEIKGI--PECIWVSAVEAYFQAAG 362 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~l---------------k~~il~~~g~~deAi~~l~~~l~~~~~--~~~~~ls~~~ly~~~~~ 362 (733)
.+.... +.++..... .+..++..|++++|+..+..++...+. ...++...+.+|...+.
T Consensus 157 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 157 DWLRYT----PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp HHHHTS----TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhC----cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 998853 344443321 244445889999999999998855554 45566667777765554
Q ss_pred -hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHH
Q 004720 363 -TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHA 441 (733)
Q Consensus 363 -~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~ 441 (733)
+.|...++ +.+ +..|++..
T Consensus 233 ~~~A~~~~~----------------------~al--~~~~~~~~------------------------------------ 252 (368)
T 1fch_A 233 YDKAVDCFT----------------------AAL--SVRPNDYL------------------------------------ 252 (368)
T ss_dssp HHHHHHHHH----------------------HHH--HHCTTCHH------------------------------------
T ss_pred HHHHHHHHH----------------------HHH--HhCcCCHH------------------------------------
Confidence 44444444 322 22332211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-------
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N------- 513 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~------- 513 (733)
.+.+.|..+++.|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|+++++++++++| +
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 23347999999999999999999999987643 46789999999999999999999999999988 5
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 514 ----IASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 514 ----~~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
....+.+..++...|++++|..+++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 5777889999999999999998775
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.3e-16 Score=174.08 Aligned_cols=348 Identities=12% Similarity=0.028 Sum_probs=234.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-Cc-hhHHHHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG-LF-EHYKSLA 221 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~-~~-~~~~~La 221 (733)
++++.+.++..+++.+..... ... ... ...++...+.++..+|++++|+.++++|+++.+. .+ ......+
T Consensus 23 ~l~~~~~~l~~~e~~~~~~~~--~~~---~~~---~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~ 94 (472)
T 4g1t_A 23 NLMEGENSLDDFEDKVFYRTE--FQN---REF---KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSL 94 (472)
T ss_dssp CTTTTCCCHHHHHHHHHHHTT--SCC---------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHH--hCC---Chh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 567788888888776643211 000 000 0134555688888999999999999999998654 11 1223456
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh--ccCcHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL--QKGEYESVIKCVR 299 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl--~~~~~ekAl~~l~ 299 (733)
..|.|+|..+...|+ +++|..+|++++++.++...... . ....++..+|.+++ ..++|++|+.+++
T Consensus 95 ~~~~nla~~y~~~g~---~~~A~~~~~ka~~i~~~~~~~~~--~-------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ 162 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGR---LSDVQIYVDKVKHVCEKFSSPYR--I-------ESPELDCEEGWTRLKCGGNQNERAKVCFE 162 (472)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCSSC--C-------CCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhHhcccccc--h-------hhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 678999999999999 99999999999999776432211 1 11235666676665 4568999999999
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHh---cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhh
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLG---LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGL 376 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~---~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~l 376 (733)
.+.++ .+.+|...+..+.++.. .+++++|+..+.+.+...|....++...+..+.....
T Consensus 163 kal~~----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~-------------- 224 (472)
T 4g1t_A 163 KALEK----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE-------------- 224 (472)
T ss_dssp HHHHH----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---------------
T ss_pred HHHHh----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh--------------
Confidence 99987 46778777666666543 4778899999988885444333333333322211110
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCH
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDY 456 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y 456 (733)
.......+..++++.+ +..|+.. ..+.+.|..+...|+|
T Consensus 225 ---~~~~~~~a~~~~~~al--~~~~~~~------------------------------------~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 225 ---EGEEEGEGEKLVEEAL--EKAPGVT------------------------------------DVLRSAAKFYRRKDEP 263 (472)
T ss_dssp --------CHHHHHHHHHH--HHCSSCH------------------------------------HHHHHHHHHHHHTTCH
T ss_pred ---hhhHHHHHHHHHHHHH--HhCccHH------------------------------------HHHHHHHHHHHHcCch
Confidence 0000112222222332 1223221 1233589999999999
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-------------------CCHHHHHHHHHHHHhhCC-ChHH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-------------------SLIDRAQEYITEAEKLEP-NIAS 516 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-------------------~~~~~A~e~~~~A~~ldp-~~~t 516 (733)
++|++.|+.++...|.+ +.++.++|.||... +.+++|.+.++++.+++| +..+
T Consensus 264 ~~A~~~~~~al~~~p~~-------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 336 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNN-------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336 (472)
T ss_dssp HHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred HHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence 99999999999987754 45788888887643 447889999999999999 8888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 517 AFLKFKIYLQKNDQEGAINQILAMTICLDFTTD----FLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 517 ~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~----lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.+.+..++...|++++|++++++.......+.+ .+.++.......|+.+.|+..++..++.
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 899999999999999999999998876543222 1222222223467788888777777763
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=9.2e-17 Score=172.53 Aligned_cols=261 Identities=11% Similarity=0.026 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.+..++..+...|++++|+..+++++.+.|..+ .+++++|..+...|+ +++|+.+|++++++ .|.+
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~---~~~A~~~~~~al~~---~p~~- 132 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDA-------EAWQFLGITQAENEN---EQAAIVALQRCLEL---QPNN- 132 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH-------HHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---CCCC-
Confidence 356678888899999999999999999888764 358888999999999 99999999999998 4322
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH----------HHHHHhcCChHH
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA----------MKAWLGLGRYNE 331 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk----------~~il~~~g~~de 331 (733)
..++..+|.+|...|++++|+.+++.+.+.. +.++...... +.++...|++++
T Consensus 133 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 133 -------------LKALMALAVSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHH
T ss_pred -------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHH
Confidence 2378889999999999999999998888752 2223322222 556666666666
Q ss_pred HHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCc--chHHHHH
Q 004720 332 AELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGV--SEAAVKL 409 (733)
Q Consensus 332 Ai~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~--~~~~l~~ 409 (733)
|+..+...+.. .|+ +..
T Consensus 196 A~~~~~~al~~---------------------------------------------------------~p~~~~~~---- 214 (365)
T 4eqf_A 196 VKELYLEAAHQ---------------------------------------------------------NGDMIDPD---- 214 (365)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------SCSSCCHH----
T ss_pred HHHHHHHHHHh---------------------------------------------------------CcCccCHH----
Confidence 66665544321 111 111
Q ss_pred HHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 410 RAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 410 ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
.+.+.|..++..|+|++|+++|+.++...|.+ +.++.+++.
T Consensus 215 --------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~ 255 (365)
T 4eqf_A 215 --------------------------------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-------YSLWNRLGA 255 (365)
T ss_dssp --------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHH
Confidence 12247888889999999999999999887744 457899999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC------------hHHHHHHHH
Q 004720 490 CYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFT------------TDFLSLAAH 556 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~------------~~lL~la~~ 556 (733)
+|...|++++|+++++++++++| ++.+.+.+..++...|++++|+++++++....+.. ..+...-..
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence 99999999999999999999999 78888999999999999999999999998776431 233333334
Q ss_pred HHHHcCCHHHHHHHHHH
Q 004720 557 EAVACQALSVAVAALSN 573 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~ 573 (733)
.....|..+.+.++.+.
T Consensus 336 ~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 336 ALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHTCHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 44456666666555443
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.75 E-value=2.3e-16 Score=164.40 Aligned_cols=300 Identities=13% Similarity=0.068 Sum_probs=222.4
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
......|..++..|+++.|..+|++|++..+. +......++...+.++...|+++.|+.++.++..+.+.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE----------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc----------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 34456799999999999999999999986321 11122356677799999999999999999999998664
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc--
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE-- 290 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~-- 290 (733)
.+. ....+.+++.+|..+...|+ +++|+.++++++++.++... ......++..++.+|...|+
T Consensus 76 ~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 76 IGD-QLGEAKASGNLGNTLKVLGN---FDEAIVCCQRHLDISRELND-----------KVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccc-cHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhcC-----------chHHHHHHHHHHHHHHHcCccc
Confidence 322 34567889999999999999 99999999999999665321 22345689999999999999
Q ss_pred ------------------HHHHHHHHHHHHccCC--CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHH
Q 004720 291 ------------------YESVIKCVRVLREGSF--DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 291 ------------------~ekAl~~l~~a~~~~~--~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ 350 (733)
+++|+.+++.+..... +.....+..++..+.++...|++++|+..+...+..
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------- 212 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-------- 212 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------
Confidence 9999988877655310 000011224466677777778888887776644320
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
.. .. ..+
T Consensus 213 ------------------~~----------------------~~----~~~----------------------------- 219 (338)
T 3ro2_A 213 ------------------AK----------------------EF----GDK----------------------------- 219 (338)
T ss_dssp ------------------HH----------------------HH----TCH-----------------------------
T ss_pred ------------------HH----------------------hc----CCh-----------------------------
Confidence 00 00 000
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
......+.+.|..++..|+|++|+++|+.++.+.+.... +...+.++.+++.+|...|++++|.+++++++++
T Consensus 220 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 220 ------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 000112335789999999999999999999987664322 3577889999999999999999999999999887
Q ss_pred CC---C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 511 EP---N----IASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 511 dp---~----~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
.| + ..+.+.+..++...|++++|+++++......+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 54 1 34667789999999999999999999887654
No 21
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.75 E-value=6.5e-17 Score=174.62 Aligned_cols=318 Identities=12% Similarity=0.047 Sum_probs=215.9
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
......|..++..|+++.|..+|++|++..+. +......++...+.++...|+++.|+.++.++..+.+.
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE----------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 34556799999999999999999999986321 11122356777799999999999999999999998765
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc--
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE-- 290 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~-- 290 (733)
... ....+.+++++|..+...|+ +++|+.++++++++.++... ......++..+|.+|...|+
T Consensus 80 ~~~-~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 80 IGD-QLGEAKASGNLGNTLKVLGN---FDEAIVCCQRHLDISRELND-----------KVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp TTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccc-cHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhccc-----------ccchHHHHHHHHHHHHHcCCcc
Confidence 332 34567889999999999999 99999999999999665320 22346689999999999999
Q ss_pred ------------------HHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhhhccC---Cc
Q 004720 291 ------------------YESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMVEIKG---IP 346 (733)
Q Consensus 291 ------------------~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l~~~~---~~ 346 (733)
|++|+.+++.+..+... .+..| ..+...+.++...|++++|+..+...+...+ .+
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 223 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA-LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc
Confidence 99999998877663210 11122 2457788899999999999999987763211 11
Q ss_pred hH---HHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 347 EC---IWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 347 ~~---~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
.. .+...+.+|...+. +.|...+++. + .+....
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------l-----------------~~~~~~---- 260 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKT----------------------L-----------------LLARQL---- 260 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------H-----------------HHHHHT----
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHH----------------------H-----------------HHHHhC----
Confidence 11 23333333333332 2222222211 1 000000
Q ss_pred HHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHH
Q 004720 423 VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQE 502 (733)
Q Consensus 423 v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e 502 (733)
. ........+.+.|..+++.|+|++|+++|+.++.+.+.... +...+.++.+++.+|..+|++++|.+
T Consensus 261 --------~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 261 --------K---DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp --------T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------c---CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 00111223445788888888888888888888876553322 24667788888888888888888888
Q ss_pred HHHHHHhhCC-------ChHHHHHHHHHHHhcCCHH
Q 004720 503 YITEAEKLEP-------NIASAFLKFKIYLQKNDQE 531 (733)
Q Consensus 503 ~~~~A~~ldp-------~~~t~~~~~ki~l~~gd~e 531 (733)
++++++++.+ ...+.+.+..++...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8888877732 2345556666766666653
No 22
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=2.1e-16 Score=172.19 Aligned_cols=303 Identities=13% Similarity=0.032 Sum_probs=229.6
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..+......|..++..|+++.|..+|++|++..+. +......++...+.+++..|++++|+.+++++..+
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34455668999999999999999999999986321 11122356677789999999999999999999998
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG 289 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~ 289 (733)
...... ....+.+++++|..+...|+ +++|+.+|++++++..+... ......++..+|.+|...|
T Consensus 116 ~~~~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 116 AKSMND-RLGEAKSSGNLGNTLKVMGR---FDEAAICCERHLTLARQLGD-----------RLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHccC-chHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHhhc-----------hHHHHHHHHHHHHHHHHcC
Confidence 654322 35577889999999999999 99999999999999665310 2234568999999999999
Q ss_pred c-----------------HHHHHHHHHHHHccCC--CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHH
Q 004720 290 E-----------------YESVIKCVRVLREGSF--DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIW 350 (733)
Q Consensus 290 ~-----------------~ekAl~~l~~a~~~~~--~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ 350 (733)
+ +++|+.+++.+..+.. +.....+..++..+.++...|++++|+..+...+..
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 252 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-------- 252 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------
Confidence 9 9999988877765321 000111234577778888888888888887654421
Q ss_pred HhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcc
Q 004720 351 VSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGD 430 (733)
Q Consensus 351 ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~ 430 (733)
.. .. ..+
T Consensus 253 ------------------~~----------------------~~----~~~----------------------------- 259 (411)
T 4a1s_A 253 ------------------AR----------------------EF----GDR----------------------------- 259 (411)
T ss_dssp ------------------HH----------------------HH----TCH-----------------------------
T ss_pred ------------------HH----------------------hc----CCc-----------------------------
Confidence 00 00 000
Q ss_pred hhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 431 AAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 431 ~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
......+.+.|..++..|+|++|+++|+.++.+.+.... +...+.++.+++.+|...|++++|.+++++++++
T Consensus 260 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 260 ------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE-REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp ------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001123445899999999999999999999987764322 2567899999999999999999999999999888
Q ss_pred CC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 511 EP-------NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 511 dp-------~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
.+ ...+.+.+..++...|++++|+++++......+
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 54 234677899999999999999999999888754
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=6.9e-17 Score=173.51 Aligned_cols=270 Identities=13% Similarity=-0.008 Sum_probs=203.4
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|..++..|+++.|..+|++|++..|. . ...+...+.++...|++++|+.+++++..+.|..+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 133 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG--------D------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--------C------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 456789999999999999999999986531 1 24566778899999999999999999999988765
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESV 294 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekA 294 (733)
.+++++|..+...|+ +++|+.+|++++++ .|.+...... ......++..++.+|...|++++|
T Consensus 134 -------~~~~~l~~~~~~~g~---~~~A~~~~~~al~~---~p~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 134 -------KALMALAVSYTNTSH---QQDACEALKNWIKQ---NPKYKYLVKN----KKGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp -------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CHHHHCC-----------------------CCHHHHHH
T ss_pred -------HHHHHHHHHHHcccc---HHHHHHHHHHHHHh---CccchHHHhh----hccchHHHHHHHHHHhhhhhHHHH
Confidence 358899999999999 99999999999998 3321110000 001133567789999999999999
Q ss_pred HHHHHHHHccCCCCCCC--CCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHH
Q 004720 295 IKCVRVLREGSFDGGDH--HASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGV 372 (733)
Q Consensus 295 l~~l~~a~~~~~~~~~~--~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~ 372 (733)
+.+++.+.+.. +. +|..++..+.++...|++++|+..+...+..
T Consensus 197 ~~~~~~al~~~----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------ 242 (365)
T 4eqf_A 197 KELYLEAAHQN----GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------------------------------ 242 (365)
T ss_dssp HHHHHHHHHHS----CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHhC----cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------------
Confidence 99999999863 34 6778899999999999999999998765431
Q ss_pred HHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh
Q 004720 373 FLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR 452 (733)
Q Consensus 373 l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k 452 (733)
.|++.. .+.+.|..+++
T Consensus 243 ---------------------------~p~~~~------------------------------------~~~~l~~~~~~ 259 (365)
T 4eqf_A 243 ---------------------------RPEDYS------------------------------------LWNRLGATLAN 259 (365)
T ss_dssp ---------------------------CTTCHH------------------------------------HHHHHHHHHHH
T ss_pred ---------------------------CCCCHH------------------------------------HHHHHHHHHHH
Confidence 111111 12247888999
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-------------hHHHHH
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN-------------IASAFL 519 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~-------------~~t~~~ 519 (733)
.|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|+++++++++++|. ......
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 332 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAA 332 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHH
Confidence 999999999999999987644 467899999999999999999999999999873 344556
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 004720 520 KFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~ 539 (733)
+..++...|+.+.|..+++.
T Consensus 333 l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 333 LRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 78888889999988877644
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.6e-16 Score=163.54 Aligned_cols=129 Identities=10% Similarity=0.047 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.+..++..++..|++++|+.+++++....|..+. .++.+|..+...|+ +++|+.+|++++++ .|.+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~---~~~A~~~~~~a~~~---~~~~- 88 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE-------AWRSLGLTQAENEK---DGLAIIALNHARML---DPKD- 88 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHhc---CcCC-
Confidence 4566788999999999999999999998887553 57788999999999 99999999999998 4321
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH--------------HH-HHHhc
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA--------------MK-AWLGL 326 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk--------------~~-il~~~ 326 (733)
..++..+|.+|...|++++|+.+++.+.+.. +.++...... +. ++...
T Consensus 89 -------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 89 -------------IAVHAALAVSHTNEHNANAALASLRAWLLSQ----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----TTTTTC--------------------CCTTSH
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc
Confidence 2378889999999999999999999988753 3344433333 22 35555
Q ss_pred CChHHHHHHHHHhhh
Q 004720 327 GRYNEAELELRGMVE 341 (733)
Q Consensus 327 g~~deAi~~l~~~l~ 341 (733)
|++++|+..+...+.
T Consensus 152 ~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 152 NEYRECRTLLHAALE 166 (327)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 667777776665553
No 25
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=5.5e-16 Score=167.30 Aligned_cols=289 Identities=12% Similarity=0.046 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++..+...|++++|+.+++++..+.|..+ ...+.+++.+|..++..|+ +++|+.++++++++......
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~- 82 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL---KTLSAIYSQLGNAYFYLHD---YAKALEYHHHDLTLARTIGD- 82 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhccc-
Confidence 3556778899999999999999999999977654 3467889999999999999 99999999999999665321
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCC----CcHHHHHHHHHHhcCC--------
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHH----ASLPVLAMKAWLGLGR-------- 328 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~----p~~~~lk~~il~~~g~-------- 328 (733)
.+....++..+|.+|...|++++|+.+++.+....+ ...+ +.+++..+.++...|+
T Consensus 83 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 150 (406)
T 3sf4_A 83 ----------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR--ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 150 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHTCC-----
T ss_pred ----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hcccccchHHHHHHHHHHHHHcCCcccccccc
Confidence 223456899999999999999999999988877431 0011 2255788889999999
Q ss_pred ------------hHHHHHHHHHhhhc---cCCc---hHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHH
Q 004720 329 ------------YNEAELELRGMVEI---KGIP---ECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVR 389 (733)
Q Consensus 329 ------------~deAi~~l~~~l~~---~~~~---~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~ 389 (733)
+++|+..+...+.. .+.+ ...+...+.+|...+. +.|...+++
T Consensus 151 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------ 212 (406)
T 3sf4_A 151 DVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ------------------ 212 (406)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH------------------
Confidence 88888887665421 1111 1122333333333322 222222221
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 390 MAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 390 ~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
.+ .+.... . ........+.+.|..++..|+|++|+++|+.++.+
T Consensus 213 ----al-----------------~~~~~~------------~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 213 ----RL-----------------LIAKEF------------G---DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp ----HH-----------------HHHHHT------------T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HH-----------------HHHHhc------------C---CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 000000 0 00111224456788888888888888888888877
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C------hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 470 LPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N------IASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 470 ~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~------~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
.+.... +...+.++.+++.+|...|++++|.+++++++++.+ . ..+.+.+..++...|++++|++++++...
T Consensus 257 ~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 257 ARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCcC-chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 654322 246678888888888888888888888888887744 2 44566788888888888888888877665
Q ss_pred c
Q 004720 543 C 543 (733)
Q Consensus 543 ~ 543 (733)
.
T Consensus 336 ~ 336 (406)
T 3sf4_A 336 I 336 (406)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=6e-16 Score=158.40 Aligned_cols=252 Identities=10% Similarity=-0.016 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+..+|..+...|+++.|+..++++.++.|..+. +++.+|..+...|+ +++|+.+|+++++. + .+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~~~---~~~A~~~~~~a~~~---~-~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY-------IYNRRAVCYYELAK---YDLAQKDIETYFSK---V-NA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST-------THHHHHHHHHHTTC---HHHHHHHHHHHHTT---S-CT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHHhh---HHHHHHHHHHHHhc---c-Cc
Confidence 45667789999999999999999999999998765 47888889999999 99999999999883 2 11
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
......++..+|.+|...|++++|+.+++.+.+. .+.++.+++..+.++...|++++|+..+...+
T Consensus 70 ----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 70 ----------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR----DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp ----------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred ----------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 1123457889999999999999999999999886 46778888999999999999999999999998
Q ss_pred hccCCchHHHHhHH-HHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhh
Q 004720 341 EIKGIPECIWVSAV-EAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVS 419 (733)
Q Consensus 341 ~~~~~~~~~~ls~~-~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~ 419 (733)
...+.....+...+ .+|....-+.|...++ +.+ +..|++..
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------------------~a~--~~~p~~~~-------------- 177 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFV----------------------KVL--ELKPNIYI-------------- 177 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH----------------------HHH--HHSTTCHH--------------
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHH--HhCccchH--------------
Confidence 65565556666666 5555442233433333 333 23343321
Q ss_pred HHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCchh-hhhhHHHHHHHHHHHHhCC
Q 004720 420 DERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD---YEASAEMFEKSMLYLPFDVEN-RILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 420 ~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~---y~~A~~~y~~aL~~~~~~~~~-~~~~akl~r~la~cyl~l~ 495 (733)
.++..|..++..|+ |++|+..|+.++.+....... ......++..++.+|...|
T Consensus 178 ----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 178 ----------------------GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp ----------------------HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 22346777888888 999999999999876322210 1345688999999999999
Q ss_pred CHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 496 LIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
++++|+++++++++++| ++...-.+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999 66554433
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.4e-15 Score=151.59 Aligned_cols=231 Identities=13% Similarity=0.068 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+...+.++...|++++|+.+++++..+. ..+ .+++++|..+...|+ +++|+.+|++++++.+....+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~-------~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~ 74 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI-------TYLNNRAAAEYEKGE---YETAISTLNDAVEQGREMRAD 74 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH-------HHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccccc
Confidence 456677889999999999999999999987 544 358899999999999 999999999999985443211
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
......++..+|.+|...|++++|+.+++.+.... |. ..++...|++++|+..+...+
T Consensus 75 ----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-----~~~~~~~~~~~~a~~~~~~~~ 132 (258)
T 3uq3_A 75 ----------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-------RT-----ADILTKLRNAEKELKKAEAEA 132 (258)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ch-----hHHHHHHhHHHHHHHHHHHHH
Confidence 12235689999999999999999999999998852 33 344555556666655544332
Q ss_pred hccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhH
Q 004720 341 EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSD 420 (733)
Q Consensus 341 ~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~ 420 (733)
. ..|++.
T Consensus 133 ~---------------------------------------------------------~~~~~~---------------- 139 (258)
T 3uq3_A 133 Y---------------------------------------------------------VNPEKA---------------- 139 (258)
T ss_dssp H---------------------------------------------------------CCHHHH----------------
T ss_pred H---------------------------------------------------------cCcchH----------------
Confidence 2 111110
Q ss_pred HHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHH
Q 004720 421 ERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRA 500 (733)
Q Consensus 421 e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A 500 (733)
..+.+.|..++..|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|
T Consensus 140 --------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 140 --------------------EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHH
Confidence 122347889999999999999999999987754 36789999999999999999
Q ss_pred HHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 501 QEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 501 ~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
+++++++++.+| ++...+.+..++...|++++|++.+++.....
T Consensus 193 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999 88999999999999999999999999998876
No 28
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.71 E-value=1.9e-15 Score=157.43 Aligned_cols=296 Identities=13% Similarity=0.055 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.+...+..+...|+++.|+..++++..+.|..+ ...+.+++.+|..+...|+ +++|+.++++++++......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~-- 78 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL---KTLSAIYSQLGNAYFYLHD---YAKALEYHHHDLTLARTIGD-- 78 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH---HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcccc--
Confidence 455668889999999999999999999877654 3467789999999999999 99999999999998654311
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC----cHHHHHHHHHHhcCC---------
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA----SLPVLAMKAWLGLGR--------- 328 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p----~~~~lk~~il~~~g~--------- 328 (733)
.+....++..+|.+|...|++++|+.+++.+....+ ...++ .+++..+.++...|+
T Consensus 79 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 79 ---------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR--ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred ---------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 223456899999999999999999999988876421 00111 133444555555554
Q ss_pred ----hHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcch
Q 004720 329 ----YNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSE 404 (733)
Q Consensus 329 ----~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~ 404 (733)
++++...+.. |.+.++ +.+
T Consensus 148 ~~~~~~~a~~~~~~--------------------------A~~~~~----------------------~a~--------- 170 (338)
T 3ro2_A 148 TGEFPEDVRNALQA--------------------------AVDLYE----------------------ENL--------- 170 (338)
T ss_dssp ---CCHHHHHHHHH--------------------------HHHHHH----------------------HHH---------
T ss_pred hhhhhhhHHHHHHH--------------------------HHHHHH----------------------HHH---------
Confidence 1111111110 011111 000
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHH
Q 004720 405 AAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSF 484 (733)
Q Consensus 405 ~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~ 484 (733)
.+.+. ..........+.+.|..++..|+|++|+++|+.++.+.+.... +...+.++
T Consensus 171 --------~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~ 226 (338)
T 3ro2_A 171 --------SLVTA---------------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERRAY 226 (338)
T ss_dssp --------HHHHH---------------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred --------HHHHh---------------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Confidence 00000 0000111224456899999999999999999999987764322 25678899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCC-C------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--C----hHHH
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEKLEP-N------IASAFLKFKIYLQKNDQEGAINQILAMTICLDF--T----TDFL 551 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~ldp-~------~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~--~----~~lL 551 (733)
.+++.+|...|++++|.+++++++++.| . ..+.+.+..++...|++++|++.++......+. + ...+
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999999999999988865 3 456677899999999999999999988766421 1 1244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 552 SLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 552 ~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
...+......|+.+.|...++..++.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44456677789999999888888773
No 29
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=1.2e-15 Score=166.03 Aligned_cols=299 Identities=11% Similarity=0.015 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++..+...|+++.|+.+++++..+.|..+ ...+.+++.+|..+...|+ +++|+.+|++++++......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~- 121 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL---RTLSAIYSQLGNAYFYLGD---YNKAMQYHKHDLTLAKSMND- 121 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh---hHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHccC-
Confidence 4555778899999999999999999999977654 3467789999999999999 99999999999999665321
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CC-CCCCCcHHHHHHHHHHhcCC----------
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DG-GDHHASLPVLAMKAWLGLGR---------- 328 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~-~~~~p~~~~lk~~il~~~g~---------- 328 (733)
......++..+|.+|...|++++|+.+++.+..... .. .+..+.+++..+.++...|+
T Consensus 122 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 122 ----------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred ----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhh
Confidence 223456899999999999999999999988776421 00 00111233455555555555
Q ss_pred hHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHH
Q 004720 329 YNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVK 408 (733)
Q Consensus 329 ~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~ 408 (733)
+++|...+... .+.+++. +.+.... .
T Consensus 192 ~~~a~~~~~~A--------------------------~~~~~~a---------------l~~~~~~----~--------- 217 (411)
T 4a1s_A 192 GDDVKEALTRA--------------------------VEFYQEN---------------LKLMRDL----G--------- 217 (411)
T ss_dssp CHHHHHHHHHH--------------------------HHHHHHH---------------HHHHHHH----T---------
T ss_pred hhhhhHHHHHH--------------------------HHHHHHH---------------HHHHHHc----C---------
Confidence 22222221111 1111100 0000000 0
Q ss_pred HHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHH
Q 004720 409 LRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLC 488 (733)
Q Consensus 409 ~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la 488 (733)
........+.+.|..++..|+|++|+++|+.++.+.+.... ....+.++.+++
T Consensus 218 --------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la 270 (411)
T 4a1s_A 218 --------------------------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-RAAERRANSNLG 270 (411)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHH
Confidence 00111224556899999999999999999999988764322 256778999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCC-C------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC------hHHHHHHH
Q 004720 489 LCYLGLSLIDRAQEYITEAEKLEP-N------IASAFLKFKIYLQKNDQEGAINQILAMTICLDFT------TDFLSLAA 555 (733)
Q Consensus 489 ~cyl~l~~~~~A~e~~~~A~~ldp-~------~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~------~~lL~la~ 555 (733)
.+|...|++++|++++++++++.| . ..+.+.+..++...|++++|+++++......... ...+...+
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 350 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG 350 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999999999999998866 2 4566789999999999999999999888764321 12444445
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 004720 556 HEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 556 ~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
......|+.+.|...++..++.
T Consensus 351 ~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 6677789999998888888874
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.5e-15 Score=151.50 Aligned_cols=234 Identities=16% Similarity=0.107 Sum_probs=193.0
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......|..++..|+++.|..+|+++++.. . . ..++..++.++...|++++|+.++.++..+.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-------~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-------D-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQG 68 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-------C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-------c-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 46678889999999999999999999999763 1 1 2567778999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
|..+........+++.+|..+...|+ +++|+.+|++++++ .+. +.++...|+
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~---~~~----------------------~~~~~~~~~ 120 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGD---LKKTIEYYQKSLTE---HRT----------------------ADILTKLRN 120 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CCC----------------------HHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHhc---Cch----------------------hHHHHHHhH
Confidence 98655556678899999999999999 99999999999998 431 234556678
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHH
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAK 370 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk 370 (733)
+++|+..++.+... .+..+..++..+.++...|++++|+..+...+..
T Consensus 121 ~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------------------------- 168 (258)
T 3uq3_A 121 AEKELKKAEAEAYV----NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---------------------------- 168 (258)
T ss_dssp HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHc----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------------------
Confidence 99999999988875 3456677789999999999999999887755431
Q ss_pred HHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHH
Q 004720 371 GVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASIL 450 (733)
Q Consensus 371 ~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~ 450 (733)
.|+++. ++.+.|..+
T Consensus 169 -----------------------------~~~~~~------------------------------------~~~~l~~~~ 183 (258)
T 3uq3_A 169 -----------------------------APEDAR------------------------------------GYSNRAAAL 183 (258)
T ss_dssp -----------------------------CTTCHH------------------------------------HHHHHHHHH
T ss_pred -----------------------------CcccHH------------------------------------HHHHHHHHH
Confidence 111110 122478889
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 451 FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 451 ~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
++.|+|++|+++|+.++...|.+ ..++.+++.+|..+|++++|.++++++++++
T Consensus 184 ~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 184 AKLMSFPEAIADCNKAIEKDPNF-------VRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999987644 4678999999999999999999999999998
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=2.4e-15 Score=157.22 Aligned_cols=280 Identities=10% Similarity=0.013 Sum_probs=200.6
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..++..|..++..|+ +++|+.+|+++++. .|.+ ..++..+|.+|...|++++|+.+++.+
T Consensus 22 ~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 22 ENPMEEGLSMLKLAN---LAEAALAFEAVCQA---APER--------------EEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp SCHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHHHh---CCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 347889999999999 99999999999997 4421 236788999999999999999999999
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCC
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~ 381 (733)
.+. .+.++..++..+.++...|++++|+..+...+...+.....+.......... .....+. ...+-...
T Consensus 82 ~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~ 151 (327)
T 3cv0_A 82 RML----DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDI---DDLNVQS---EDFFFAAP 151 (327)
T ss_dssp HHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------CCTTSH
T ss_pred Hhc----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHH---HHHHHHH---HhHHHHHc
Confidence 886 3567788899999999999999999999988854443333321111100000 0000000 00000000
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 004720 382 VSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAE 461 (733)
Q Consensus 382 ~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~ 461 (733)
.....+...+++.+ +..|++ ..+++..|..+++.|+|++|++
T Consensus 152 ~~~~~A~~~~~~~~--~~~~~~------------------------------------~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 152 NEYRECRTLLHAAL--EMNPND------------------------------------AQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp HHHHHHHHHHHHHH--HHSTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHH--hhCCCC------------------------------------HHHHHHHHHHHHHhccHHHHHH
Confidence 00122222222222 111111 1234458999999999999999
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
+|+.++...|.+ ..++.+++.+|...|++++|+++++++++.+| ++...+.+..++...|++++|++.++++
T Consensus 194 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 194 NLRRAVELRPDD-------AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999887644 35789999999999999999999999999999 8899999999999999999999999999
Q ss_pred HhccCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 541 TICLDF------------TTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 541 ~~~~~~------------~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
....+. .+......+......|+.+.|...++..++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888766 466665556777788898888776654444
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=7e-15 Score=150.19 Aligned_cols=252 Identities=12% Similarity=-0.029 Sum_probs=184.8
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
..|++++|+..++++....+..+ ...+.+++.+|..+...|+ +++|+.+|++++++ .|.+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~---~~~~----------- 76 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTD---DERAQLLYERGVLYDSLGL---RALARNDFSQALAI---RPDM----------- 76 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCH---HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CCCC-----------
T ss_pred ccchHHHHHHHHHHHHhcccccC---chhHHHHHHHHHHHHHccc---HHHHHHHHHHHHHc---CCCc-----------
Confidence 56999999999999998744322 2356789999999999999 99999999999998 5422
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHH
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
..++..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...+.......
T Consensus 77 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 77 ---PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence 127889999999999999999999999986 4567888899999999999999999999988844333322211
Q ss_pred hHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcch
Q 004720 352 SAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDA 431 (733)
Q Consensus 352 s~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~ 431 (733)
.....+.....+.|...++ +.+ ...|++
T Consensus 150 ~~~~~~~~~~~~~A~~~~~----------------------~~~--~~~~~~---------------------------- 177 (275)
T 1xnf_A 150 WLYLAEQKLDEKQAKEVLK----------------------QHF--EKSDKE---------------------------- 177 (275)
T ss_dssp HHHHHHHHHCHHHHHHHHH----------------------HHH--HHSCCC----------------------------
T ss_pred HHHHHHHhcCHHHHHHHHH----------------------HHH--hcCCcc----------------------------
Confidence 1111111111122222222 222 111111
Q ss_pred hHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 432 AAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 432 ~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
...|..+..++..+++++|++.|..++...|... +..+.++.++|.+|..+|++++|.++++++++++
T Consensus 178 ---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 178 ---------QWGWNIVEFYLGNISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp ---------STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ---------hHHHHHHHHHHHhcCHHHHHHHHHHHhccccccc---ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 1234577788899999999999999988765432 4567899999999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
| +.... ..++...|++++|++++
T Consensus 246 p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHHH---HHHHHHHHHHHHC----
T ss_pred chhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9 54433 55667788999999887
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=4.8e-14 Score=144.10 Aligned_cols=236 Identities=8% Similarity=0.017 Sum_probs=159.3
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
+++++.|..++..|+ +++|+..|+++++. .|.+. .++..+|.+|...|++++|+.+++.+
T Consensus 4 ~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~---~p~~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 4 DVEFRYADFLFKNNN---YAEAIEVFNKLEAK---KYNSP--------------YIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp -CHHHHHHHHHTTTC---HHHHHHHHHHHHHT---TCCCS--------------TTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHh---CCCcH--------------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 357889999999999 99999999999987 54322 16778899999999999999999999
Q ss_pred HccCCCCCCCCCc----HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhh
Q 004720 302 REGSFDGGDHHAS----LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGL 376 (733)
Q Consensus 302 ~~~~~~~~~~~p~----~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~l 376 (733)
...+ .+|. +++..+.++...|++++|+..+.+.+...+.....+...+.+|...+. +.|.+.++
T Consensus 64 ~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------ 132 (272)
T 3u4t_A 64 FSKV-----NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME------ 132 (272)
T ss_dssp HTTS-----CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG------
T ss_pred Hhcc-----CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH------
Confidence 8832 3333 368999999999999999999998885444444555556665554444 33333333
Q ss_pred hccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCH
Q 004720 377 LGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDY 456 (733)
Q Consensus 377 l~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y 456 (733)
+.+ +..|++... +++.|...+..++|
T Consensus 133 ----------------~al--~~~~~~~~~------------------------------------~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 133 ----------------KQI--RPTTTDPKV------------------------------------FYELGQAYYYNKEY 158 (272)
T ss_dssp ----------------GGC--CSSCCCHHH------------------------------------HHHHHHHHHHTTCH
T ss_pred ----------------HHh--hcCCCcHHH------------------------------------HHHHHHHHHHHHHH
Confidence 333 334433211 12345444555577
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhC---CCh------HHHHHHHHHH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL---IDRAQEYITEAEKLE---PNI------ASAFLKFKIY 524 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~---~~~A~e~~~~A~~ld---p~~------~t~~~~~ki~ 524 (733)
++|++.|+.++...|.+ ...+..++.++..+++ +++|+..+++++++. |++ ...+.+..++
T Consensus 159 ~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 77777777777666533 2456667777777776 666777777776664 321 2444566677
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
...|++++|+++++++....+.+++
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHH
Confidence 7777777777777777766655554
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.4e-14 Score=159.01 Aligned_cols=238 Identities=6% Similarity=-0.056 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcC-CCCCHHHHHHHHHHHHHHHhcCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN-ETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~-~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
.+.+.+++.++...|++++|+.++++++.+.|..+. +++++|..+...| + +++|+.+|++++.+ +|
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~-------a~~~~g~~l~~~g~d---~~eAl~~~~~al~l---~P 163 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT-------VWHFRRVLLKSLQKD---LHEEMNYITAIIEE---QP 163 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTCC---HHHHHHHHHHHHHH---CT
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH-------HHHHHHHHHHHcccC---HHHHHHHHHHHHHH---CC
Confidence 356667788888999999999999999999998764 5888999999998 6 99999999999999 55
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+ ..+|.+++.+|...|++++|+.+++.+... ++.++.+++.++.++...|++++|+..+.+
T Consensus 164 ~~--------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 164 KN--------------YQVWHHRRVLVEWLRDPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp TC--------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred CC--------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 32 238999999999999999999999999987 567888899999999999999999999887
Q ss_pred hhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 339 MVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 339 ~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
+|...+ ++..+|
T Consensus 226 al~l~P---------------------------------------------------------~~~~a~----------- 237 (382)
T 2h6f_A 226 LLKEDV---------------------------------------------------------RNNSVW----------- 237 (382)
T ss_dssp HHHHCT---------------------------------------------------------TCHHHH-----------
T ss_pred HHHhCC---------------------------------------------------------CCHHHH-----------
Confidence 764222 121111
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh-cCCHHHH-----HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHH
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFR-SKDYEAS-----AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYL 492 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k-~~~y~~A-----~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl 492 (733)
.+.|..+.+ .|.+++| +++|+.++.+.|.+ ..++.+++.++.
T Consensus 238 -------------------------~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-------~~a~~~l~~ll~ 285 (382)
T 2h6f_A 238 -------------------------NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQ 285 (382)
T ss_dssp -------------------------HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHT
T ss_pred -------------------------HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHH
Confidence 124555555 3443666 69999999998855 357899999999
Q ss_pred hCC--CHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhccCCChH
Q 004720 493 GLS--LIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKN--------D-QEGAINQILAM-TICLDFTTD 549 (733)
Q Consensus 493 ~l~--~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g--------d-~e~Al~~l~~~-~~~~~~~~~ 549 (733)
..| ++++|++.+.++ +.+| ++.....++.++...| + .++|++.|+.+ .+..+...+
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~ 354 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE 354 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred ccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence 988 799999999998 8899 8889999999999874 3 58999999998 676443333
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=1.6e-13 Score=144.63 Aligned_cols=267 Identities=8% Similarity=0.011 Sum_probs=197.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
.++.+...|+++.|+..+++.....|... ....+.+++.++..|+ ++.|+.-++. . + +
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~------~e~~~~l~r~yi~~g~---~~~al~~~~~-------~--~----~ 62 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERD------VERDVFLYRAYLAQRK---YGVVLDEIKP-------S--S----A 62 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHH------HHHHHHHHHHHHHTTC---HHHHHHHSCT-------T--S----C
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhh------HHHHHHHHHHHHHCCC---HHHHHHHhcc-------c--C----C
Confidence 35677789999999999998776665421 1234556788889999 8888743322 1 1 0
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
. ....+..++..|...+++++|++.++.+.... ..+.+|..++..+.++...|++++|+..+.+ +.
T Consensus 63 -----~--~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~ 128 (291)
T 3mkr_A 63 -----P--ELQAVRMFAEYLASHSRRDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD 128 (291)
T ss_dssp -----H--HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC
T ss_pred -----h--hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC
Confidence 1 13478889999999999999999999876521 0256777889999999999999999999875 34
Q ss_pred chHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHH
Q 004720 346 PECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVL 424 (733)
Q Consensus 346 ~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~ 424 (733)
....+...+.+|...++ +.|...++++ + +..|++.... +
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~----------------------~--~~~p~~~~~~-----l----------- 168 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKM----------------------Q--DQDEDATLTQ-----L----------- 168 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------H--HHCTTCHHHH-----H-----------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------------H--hhCcCcHHHH-----H-----------
Confidence 45566667777776665 5555555533 2 2234331000 0
Q ss_pred HHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 425 ALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 425 ~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
..- +...+...|+|++|+..|+.++..+|.+ ..++.++|.||.++|++++|++.+
T Consensus 169 ----------------~~a--~~~l~~~~~~~~eA~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 169 ----------------ATA--WVSLAAGGEKLQDAYYIFQEMADKCSPT-------LLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp ----------------HHH--HHHHHHCTTHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------HHH--HHHHHhCchHHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000 1223346699999999999999887744 468999999999999999999999
Q ss_pred HHHHhhCC-ChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhccCCChHHHHH
Q 004720 505 TEAEKLEP-NIASAFLKFKIYLQKNDQEG-AINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 505 ~~A~~ldp-~~~t~~~~~ki~l~~gd~e~-Al~~l~~~~~~~~~~~~lL~l 553 (733)
+++++++| ++.+.+.+..++...|+.++ +.++++++....+.+|.+..+
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999 99999999999999999976 568889999998888886654
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=1.6e-14 Score=145.11 Aligned_cols=195 Identities=14% Similarity=0.057 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++.++...|++++|+..+++++.++|.++. +++++|..+...|+ +++|+.+|++++++ +|.+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~~lg~~~~~~g~---~~~A~~~~~~al~~---~P~~ 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE-------ALYWLARTQLKLGL---VNPALENGKTLVAR---TPRY 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCc
Confidence 34566788899999999999999999999998774 48889999999999 99999999999999 5532
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhcc-----------CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCCh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQK-----------GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRY 329 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~-----------~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~ 329 (733)
. .++..+|.+|... |++++|+.+++.+.+. .+.++..++..+.++...|++
T Consensus 73 ~--------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 73 L--------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV----NPRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp H--------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCH
T ss_pred H--------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCh
Confidence 2 2788899999999 9999999999999986 467788889999999999999
Q ss_pred HHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHH
Q 004720 330 NEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKL 409 (733)
Q Consensus 330 deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ 409 (733)
++|+..+.+.+.. . +++.
T Consensus 135 ~~A~~~~~~al~~-------------------------------------------------------~---~~~~---- 152 (217)
T 2pl2_A 135 DKAEASLKQALAL-------------------------------------------------------E---DTPE---- 152 (217)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------C---CCHH----
T ss_pred HHHHHHHHHHHhc-------------------------------------------------------c---cchH----
Confidence 9999998766531 0 0111
Q ss_pred HHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 410 RAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 410 ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
.+++.|..+...|+|++|+.+|+.++...|.+ ..++.+++.
T Consensus 153 --------------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~ 193 (217)
T 2pl2_A 153 --------------------------------IRSALAELYLSMGRLDEALAQYAKALEQAPKD-------LDLRVRYAS 193 (217)
T ss_dssp --------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHH
Confidence 12347888999999999999999999988754 367899999
Q ss_pred HHHhCCCHHHHHHHHHHH
Q 004720 490 CYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A 507 (733)
+|..+|++++|++.++++
T Consensus 194 ~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 194 ALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTC--------------
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 999999999999999875
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=2.9e-14 Score=143.21 Aligned_cols=204 Identities=12% Similarity=0.037 Sum_probs=145.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
.+..+|.++...|++++|+.+++.+.+. ++.+|..++..+.++...|++++|+..+.+.+...|.....+...+.+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 6888999999999999999999999886 567888999999999999999999999999996656566666677777
Q ss_pred HHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHh
Q 004720 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKER 436 (733)
Q Consensus 357 y~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~ 436 (733)
|............ .......++..+++.+ +..|++..
T Consensus 83 ~~~~~~~~~~~~~----------~~g~~~~A~~~~~~al--~~~P~~~~------------------------------- 119 (217)
T 2pl2_A 83 YVALYRQAEDRER----------GKGYLEQALSVLKDAE--RVNPRYAP------------------------------- 119 (217)
T ss_dssp HHHHHHTCSSHHH----------HHHHHHHHHHHHHHHH--HHCTTCHH-------------------------------
T ss_pred HHHhhhhhhhhcc----------cccCHHHHHHHHHHHH--HhCcccHH-------------------------------
Confidence 7654110000000 0000123333333444 34443322
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.+.+.|..++..|+|++|+++|+.++.+. .+ ..++.++|.+|..+|++++|++.|+++++++| ++.
T Consensus 120 -----~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 120 -----LHLQRGLVYALLGERDKAEASLKQALALE-DT-------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 22358999999999999999999999886 33 35789999999999999999999999999999 888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
..+.+..++...|++++|++.+++.
T Consensus 187 ~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 187 LRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999988765
No 38
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=1.6e-13 Score=149.08 Aligned_cols=261 Identities=16% Similarity=0.102 Sum_probs=198.2
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
.+.-.|..++..|+++.|..+|++|++..... ... ......+...+.++...|+++.|+.++.+|+++.+..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~---~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFV-----KDR---IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-----CCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 44558999999999999999999999864321 111 1123566677899999999999999999999998887
Q ss_pred chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 214 FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 214 ~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
+......+.+++++|..+...|+ +++|+.+|++|+++.++... ....+.++.++|.+|...|++++
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQ---YEDAISHFQKAYSMAEAEKQ-----------PQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHCCCHHH
Confidence 65567788999999999999999 99999999999999765421 23456689999999999999999
Q ss_pred HHHHHHHHHccCC-CCC-CCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHH
Q 004720 294 VIKCVRVLREGSF-DGG-DHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKG 371 (733)
Q Consensus 294 Al~~l~~a~~~~~-~~~-~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~ 371 (733)
|+.+++.+..+.. ... +..+.+++..+.++...|++++|+..+...+.. .+
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------------------~~- 295 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY--------------------------SQ- 295 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------HH-
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------------HH-
Confidence 9999988877421 112 334556788999999999999999998765431 00
Q ss_pred HHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHH
Q 004720 372 VFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILF 451 (733)
Q Consensus 372 ~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~ 451 (733)
.. ++|.. .. .+...|..+.
T Consensus 296 ---------------------~~----~~~~~-----------------------------------~~-~~~~l~~~~~ 314 (383)
T 3ulq_A 296 ---------------------KA----GDVIY-----------------------------------LS-EFEFLKSLYL 314 (383)
T ss_dssp ---------------------HH----TCHHH-----------------------------------HH-HHHHHHHHHT
T ss_pred ---------------------Hc----CCHHH-----------------------------------HH-HHHHHHHHHh
Confidence 00 00100 00 0123677788
Q ss_pred hcCC---HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 452 RSKD---YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 452 k~~~---y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+.|+ +++|+++++..- + ++..+.++.++|.+|...|++++|.+++++++++..
T Consensus 315 ~~~~~~~~~~al~~~~~~~-----~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 315 SGPDEEAIQGFFDFLESKM-----L---YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp SSCCHHHHHHHHHHHHHTT-----C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHCc-----C---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8888 777777777761 1 257788999999999999999999999999988743
No 39
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=4.5e-13 Score=145.48 Aligned_cols=333 Identities=13% Similarity=0.023 Sum_probs=224.9
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHH-----------H
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAI-----------T 201 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~-----------~ 201 (733)
...+...-..+..++++.|...+++.-+..+.+. .+.+....+.++..| ..+..++++.+. .
T Consensus 13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~-----~~~~~~~y~~ll~~r--~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQME-----EDQDLHLYYSLMEFR--HNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHH--HHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHH--HHHHHhhcCcccccccccccchhh
Confidence 3444455566789999999999988766554321 122222223444444 444556666666 6
Q ss_pred HHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHH
Q 004720 202 LLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFI 281 (733)
Q Consensus 202 ~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~L 281 (733)
.++++......... ..-...++..|..++..|+ +++|+.+|++|+++.++.+. ....+.++..+
T Consensus 86 ~~~~i~~~~~~~~~--~l~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~l 149 (383)
T 3ulq_A 86 LLLEIDKKQARLTG--LLEYYFNFFRGMYELDQRE---YLSAIKFFKKAESKLIFVKD-----------RIEKAEFFFKM 149 (383)
T ss_dssp HHHHHHHHTHHHHH--HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTGGGCCC-----------HHHHHHHHHHH
T ss_pred HHHHHHhcCCCchh--HHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhCCC-----------HHHHHHHHHHH
Confidence 67766543221111 1112244567999999999 99999999999998665321 22356689999
Q ss_pred HHHHhccCcHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHH
Q 004720 282 SAIHLQKGEYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYF 358 (733)
Q Consensus 282 a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~ 358 (733)
|.+|...|++++|+.+++.+..+....+...| .+++..+.++...|++++|+..+...+..
T Consensus 150 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------- 213 (383)
T 3ulq_A 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM---------------- 213 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------
Confidence 99999999999999999988885420011011 24577788889999999999887755431
Q ss_pred HhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhH
Q 004720 359 QAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIA 438 (733)
Q Consensus 359 ~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~ 438 (733)
.+ . .+ +. ..
T Consensus 214 ----------~~----------------------~------~~-~~--------------------------------~~ 222 (383)
T 3ulq_A 214 ----------AE----------------------A------EK-QP--------------------------------QL 222 (383)
T ss_dssp ----------HH----------------------H------TT-CH--------------------------------HH
T ss_pred ----------HH----------------------H------cC-Ch--------------------------------HH
Confidence 00 0 00 00 01
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CC-
Q 004720 439 MHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-----EP- 512 (733)
Q Consensus 439 ~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-----dp- 512 (733)
....+.+.|..++..|+|++|+++|+.++.+.+.... .+..+.++.++|.+|..+|++++|.+++++|+++ +|
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 1123456899999999999999999999986543221 1466899999999999999999999999999988 44
Q ss_pred ChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 513 NIASAFLKFKIYLQKND---QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd---~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
.......+..++...|+ .++|+..++..... +...+.....+......|+.+.|...++..++.
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~-~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY-ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23334568889999999 77777777665221 112234444456777899999999888888773
No 40
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.59 E-value=9.7e-12 Score=140.00 Aligned_cols=351 Identities=14% Similarity=0.014 Sum_probs=240.0
Q ss_pred HHHHhhhHHhc----cCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHH
Q 004720 134 FYFKTGVVWHD----LKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWE----VLEQNLAITLLNR 205 (733)
Q Consensus 134 ~~~k~G~~~~~----~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~----~g~~~~A~~~~~r 205 (733)
.....|..+.. .++++.|...|++|++.- . ...+...+..+.. .+++++|+.++.+
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----------Y------TPAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------C------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 33455666666 899999999999998631 1 1223334667777 8999999999999
Q ss_pred HHhhhhcCchhHHHHHHHHHHHhHHHHh----cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHH
Q 004720 206 AKCLLFGLFEHYKSLANQYLTFAKSALS----KNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFI 281 (733)
Q Consensus 206 A~~l~~~~~~~~~~La~~~~~~G~~~~~----~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~L 281 (733)
+.+. ..+ ..++++|..+.. .++ +++|+.||+++.+. + + ...+..|
T Consensus 105 a~~~--~~~-------~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~---~--~--------------~~a~~~L 153 (490)
T 2xm6_A 105 AALK--GLP-------QAQQNLGVMYHEGNGVKVD---KAESVKWFRLAAEQ---G--R--------------DSGQQSM 153 (490)
T ss_dssp HHHT--TCH-------HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---T--C--------------HHHHHHH
T ss_pred HHHC--CCH-------HHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHC---C--C--------------HHHHHHH
Confidence 9864 333 347788888877 677 99999999999875 2 1 1267889
Q ss_pred HHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 282 SAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 282 a~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
+.+|.. .+++++|+.+++.+.+. .+|.+.+..+.++.. .+++++|+..+...+... ....+...
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l 225 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHL 225 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 999987 67999999999988763 467888888999888 789999999998877532 23345567
Q ss_pred HHHHHHh----ch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004720 354 VEAYFQA----AG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFV 428 (733)
Q Consensus 354 ~~ly~~~----~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~ 428 (733)
+.+|... .. +.|++.+++.+. ..++ .....+-.-+..+.+.+.+. .+ ....+.
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~----~~~~--~a~~~lg~~y~~g~~~~~d~----~~------------A~~~~~ 283 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAE----QGNS--IAQFRLGYILEQGLAGAKEP----LK------------ALEWYR 283 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHT----TTCH--HHHHHHHHHHHHTTTSSCCH----HH------------HHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH----CCCH--HHHHHHHHHHHCCCCCCCCH----HH------------HHHHHH
Confidence 7777652 12 566666665431 1111 11111111111001111111 11 111111
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC---CHHHH
Q 004720 429 GDAAAKERIAMHAVLWNCASILFRS-----KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS---LIDRA 500 (733)
Q Consensus 429 g~~~~~~~~~~~~llW~~g~~~~k~-----~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~---~~~~A 500 (733)
+.. +. ......++.|..+... +++++|++||+.+.+.. ....+.+++.+|...| ++++|
T Consensus 284 --~a~-~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 284 --KSA-EQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---------DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp --HHH-TT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred --HHH-Hc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCcccHHHH
Confidence 000 00 0112334578888887 99999999999998742 2357899999999877 89999
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHH----cCCHHHHHHHHH
Q 004720 501 QEYITEAEKLEPNIASAFLKFKIYLQ----KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVA----CQALSVAVAALS 572 (733)
Q Consensus 501 ~e~~~~A~~ldp~~~t~~~~~ki~l~----~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~----~~~~~~a~~aL~ 572 (733)
++.|++|.+. .++...+.+..++.. .+|+++|++++++..... +++....-...... .++.+.|+..++
T Consensus 351 ~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 351 VEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999999876 468888899999998 899999999999988753 45543333344444 688999999998
Q ss_pred HHHhh
Q 004720 573 NLLNF 577 (733)
Q Consensus 573 ~Ll~~ 577 (733)
..++.
T Consensus 428 ~A~~~ 432 (490)
T 2xm6_A 428 TASTN 432 (490)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 88884
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=5.2e-14 Score=136.04 Aligned_cols=169 Identities=15% Similarity=0.197 Sum_probs=137.1
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
.+.+|+++|..+..+|+ +++|+.+|++++++ +|.+. .++..+|.+|...|++++|+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~---~~~A~~~~~~al~~---~p~~~--------------~~~~~la~~~~~~~~~~~a~~~~~ 63 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGD---FDGAIRAYKKVLKA---DPNNV--------------ETLLKLGKTYMDIGLPNDAIESLK 63 (184)
T ss_dssp CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCH--------------HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35689999999999999 99999999999998 55332 278889999999999999999998
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhcc
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGR 379 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~ 379 (733)
.+... .+.++......+.++...+++++|+..+...+..
T Consensus 64 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~------------------------------------- 102 (184)
T 3vtx_A 64 KFVVL----DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL------------------------------------- 102 (184)
T ss_dssp HHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHhc----CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------
Confidence 88875 3566777788888888888888888776544321
Q ss_pred CCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHH
Q 004720 380 CHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459 (733)
Q Consensus 380 ~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A 459 (733)
.|++.. .....|..+++.|+|++|
T Consensus 103 --------------------~~~~~~------------------------------------~~~~lg~~~~~~g~~~~A 126 (184)
T 3vtx_A 103 --------------------NTVYAD------------------------------------AYYKLGLVYDSMGEHDKA 126 (184)
T ss_dssp --------------------CTTCHH------------------------------------HHHHHHHHHHHTTCHHHH
T ss_pred --------------------CccchH------------------------------------HHHHHHHHHHHhCCchhH
Confidence 121211 112378889999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
++.|+.++.+.|.+ +.++.++|.||.++|++++|+++|++|++++|
T Consensus 127 ~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 127 IEAYEKTISIKPGF-------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHhcchh-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 99999999987744 46789999999999999999999999999998
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=6.3e-14 Score=153.90 Aligned_cols=252 Identities=10% Similarity=-0.054 Sum_probs=193.0
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLE-QNLAITLLNRAKCLL 210 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~-~~~A~~~~~rA~~l~ 210 (733)
.......|..+...|+++.|+.+|++|+++.|.- ..++.+++.++...|+ +++|+.++++++.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--------------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--------------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 4456668889999999999999999999876531 2567788889999997 999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
|.++. +++++|..+...|+ +++|+..|++++++ +|.+. .+|.+++.+|...|+
T Consensus 163 P~~~~-------a~~~~g~~~~~~g~---~~eAl~~~~kal~l---dP~~~--------------~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 163 PKNYQ-------VWHHRRVLVEWLRD---PSQELEFIADILNQ---DAKNY--------------HAWQHRQWVIQEFKL 215 (382)
T ss_dssp TTCHH-------HHHHHHHHHHHHTC---CTTHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHHHTC
T ss_pred CCCHH-------HHHHHHHHHHHccC---HHHHHHHHHHHHHh---CccCH--------------HHHHHHHHHHHHcCC
Confidence 98764 58899999999999 99999999999999 65332 389999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh-cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHH
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG-LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETA 369 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~-~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~l 369 (733)
+++|+.+++.+.+. ++.++.+++.++.++.. .|.+++|+.... ++.+
T Consensus 216 ~~eAl~~~~~al~l----~P~~~~a~~~lg~~l~~l~~~~~eA~~~~e----------------------------l~~~ 263 (382)
T 2h6f_A 216 WDNELQYVDQLLKE----DVRNNSVWNQRYFVISNTTGYNDRAVLERE----------------------------VQYT 263 (382)
T ss_dssp CTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHH----------------------------HHHH
T ss_pred hHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCcchHHHHHHH----------------------------HHHH
Confidence 99999999999987 46788899999999999 555588752210 1111
Q ss_pred HHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHH
Q 004720 370 KGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASI 449 (733)
Q Consensus 370 k~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~ 449 (733)
+ +.+ +..|++...| .+.|..
T Consensus 264 ~----------------------~Al--~l~P~~~~a~------------------------------------~~l~~l 283 (382)
T 2h6f_A 264 L----------------------EMI--KLVPHNESAW------------------------------------NYLKGI 283 (382)
T ss_dssp H----------------------HHH--HHSTTCHHHH------------------------------------HHHHHH
T ss_pred H----------------------HHH--HHCCCCHHHH------------------------------------HHHHHH
Confidence 1 111 2344443322 124666
Q ss_pred HHhcC--CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC--------C-HHHHHHHHHHH-HhhCC-ChHH
Q 004720 450 LFRSK--DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS--------L-IDRAQEYITEA-EKLEP-NIAS 516 (733)
Q Consensus 450 ~~k~~--~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~--------~-~~~A~e~~~~A-~~ldp-~~~t 516 (733)
+.+.| +|++|+++++.. ...| +...++..++.||.++| + +++|+++|+++ .++|| ....
T Consensus 284 l~~~g~~~~~~a~~~~~~~-~~~p-------~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~ 355 (382)
T 2h6f_A 284 LQDRGLSKYPNLLNQLLDL-QPSH-------SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 355 (382)
T ss_dssp HTTTCGGGCHHHHHHHHHH-TTTC-------CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHccCccchHHHHHHHHHh-ccCC-------CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 66666 799999999886 4444 34567889999999985 3 69999999999 99999 5554
Q ss_pred HHHHHHHH
Q 004720 517 AFLKFKIY 524 (733)
Q Consensus 517 ~~~~~ki~ 524 (733)
...+...+
T Consensus 356 w~~~~~~l 363 (382)
T 2h6f_A 356 WRYIGRSL 363 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=3.6e-14 Score=142.07 Aligned_cols=218 Identities=17% Similarity=0.080 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+..++..+...|+++.|+.+++++....|..+ .+++.+|..+...|+ +++|+..|++++++ .+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~la~~~~~~~~---~~~A~~~~~~~~~~---~~~ 89 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA-------IPYINFANLLSSVNE---LERALAFYDKALEL---DSS 89 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHHc---CCc
Confidence 34666778889999999999999999999887754 357888999999999 99999999999998 432
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+ ..++..++.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...
T Consensus 90 ~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 90 A--------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRA----GMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred c--------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 237888999999999999999999988876 3566777888899999999999998887655
Q ss_pred hhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhh
Q 004720 340 VEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVS 419 (733)
Q Consensus 340 l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~ 419 (733)
+.. .|++..
T Consensus 152 ~~~---------------------------------------------------------~~~~~~-------------- 160 (243)
T 2q7f_A 152 VEL---------------------------------------------------------NENDTE-------------- 160 (243)
T ss_dssp HHH---------------------------------------------------------CTTCHH--------------
T ss_pred HHh---------------------------------------------------------CCccHH--------------
Confidence 431 111100
Q ss_pred HHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHH
Q 004720 420 DERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDR 499 (733)
Q Consensus 420 ~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~ 499 (733)
.++..|..+++.|+|++|+++|+.++...|.+ ..++..++.+|..+|++++
T Consensus 161 ----------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 161 ----------------------ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-------ADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp ----------------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTH
T ss_pred ----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHccCHHH
Confidence 12236888889999999999999999887643 3578999999999999999
Q ss_pred HHHHHHHHHhhCC-ChHHHHHHHHHHHhcC
Q 004720 500 AQEYITEAEKLEP-NIASAFLKFKIYLQKN 528 (733)
Q Consensus 500 A~e~~~~A~~ldp-~~~t~~~~~ki~l~~g 528 (733)
|.++++++++++| ++...+.+..+....+
T Consensus 212 A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 212 ALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999 7777777666655443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=5.2e-13 Score=134.95 Aligned_cols=210 Identities=14% Similarity=0.038 Sum_probs=171.1
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
.+.+++.+|..+...|+ +++|+.+|++++++ .+.+ ..++..+|.+|...|++++|+.+++
T Consensus 36 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~---~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~ 95 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGN---TEQAKVPLRKALEI---DPSS--------------ADAHAALAVVFQTEMEPKLADEEYR 95 (252)
T ss_dssp HHHHHHHHHHHHHHTTC---TGGGHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhc---CCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36778999999999999 99999999999998 4321 2378889999999999999999999
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhcc
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGR 379 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~ 379 (733)
.+.+. .+.++..++..+.++...|++++|+..+...+..+
T Consensus 96 ~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------------------------------ 135 (252)
T 2ho1_A 96 KALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT------------------------------------ 135 (252)
T ss_dssp HHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT------------------------------------
T ss_pred HHHHH----CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc------------------------------------
Confidence 88875 34567777888999999999999988876554300
Q ss_pred CCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHH
Q 004720 380 CHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459 (733)
Q Consensus 380 ~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A 459 (733)
..|++.. .+.+.|..+++.|+|++|
T Consensus 136 -------------------~~~~~~~------------------------------------~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 136 -------------------LYPERSR------------------------------------VFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp -------------------TCTTHHH------------------------------------HHHHHHHHHHHTTCHHHH
T ss_pred -------------------cCcccHH------------------------------------HHHHHHHHHHHcCCHHHH
Confidence 1111100 122368888999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
+++|+.++...|.+ ..++..++.+|...|++++|.++++++++.+| ++...+.+..++...|++++|++.++
T Consensus 161 ~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQ-------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999887644 35789999999999999999999999999999 78888889999999999999999999
Q ss_pred HHHhccCCChHHH
Q 004720 539 AMTICLDFTTDFL 551 (733)
Q Consensus 539 ~~~~~~~~~~~lL 551 (733)
.+....+.++++.
T Consensus 234 ~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 234 QLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHCTTSHHHH
T ss_pred HHHHHCCCCHHHH
Confidence 9998877777643
No 45
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.56 E-value=2e-13 Score=143.94 Aligned_cols=278 Identities=10% Similarity=0.058 Sum_probs=191.0
Q ss_pred hHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHH
Q 004720 140 VVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS 219 (733)
Q Consensus 140 ~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~ 219 (733)
+-.+-.|+|+.|+..+++.....| +. . .......+++++.+|+++.|+..+++. .|.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p---------~~--~--~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~---- 63 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSP---------ER--D--VERDVFLYRAYLAQRKYGVVLDEIKPS------SAP---- 63 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSH---------HH--H--HHHHHHHHHHHHHTTCHHHHHHHSCTT------SCH----
T ss_pred HHHHHHHHHHHHHHHHHhcccCCc---------hh--h--HHHHHHHHHHHHHCCCHHHHHHHhccc------CCh----
Confidence 445678888888887766543222 11 0 122233366999999999999876542 221
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
-...+..++..+...++ +++|+..|++.+..- ..|.+ ..++..+|.+|...|++++|+.+++
T Consensus 64 ~~~a~~~la~~~~~~~~---~~~A~~~l~~ll~~~-~~P~~--------------~~~~~~la~~~~~~g~~~~Al~~l~ 125 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSR---RDAIVAELDREMSRS-VDVTN--------------TTFLLMAASIYFYDQNPDAALRTLH 125 (291)
T ss_dssp HHHHHHHHHHHHHCSTT---HHHHHHHHHHHHHSC-CCCSC--------------HHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcc-cCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 12345556777778888 999999888877630 01211 1267889999999999999999887
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHH--hHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWV--SAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~l--s~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
. + .++...+..+.++.+.|++++|+..++.++...|......+ ....++...++
T Consensus 126 ~----~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~--------------- 181 (291)
T 3mkr_A 126 Q----G-----DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK--------------- 181 (291)
T ss_dssp T----C-----CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH---------------
T ss_pred C----C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH---------------
Confidence 6 1 46788899999999999999999999998854332221111 01122211111
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
...|..++++.+ +..|+++ .++++.|..+.+.|+|+
T Consensus 182 ------~~eA~~~~~~~l--~~~p~~~------------------------------------~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 182 ------LQDAYYIFQEMA--DKCSPTL------------------------------------LLLNGQAACHMAQGRWE 217 (291)
T ss_dssp ------HHHHHHHHHHHH--HHSCCCH------------------------------------HHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHHHHH--HhCCCcH------------------------------------HHHHHHHHHHHHcCCHH
Confidence 233333333443 2234331 24556899999999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDR-AQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAIN 535 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~-A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~ 535 (733)
+|++.|+.++...|.+ +..+.+++.++..+|++++ +.++++++++++| ++... .+..+.+.+|+|+.
T Consensus 218 eA~~~l~~al~~~p~~-------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGH-------PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999998755 3568999999999999986 5789999999999 77654 34666777888887
Q ss_pred HH
Q 004720 536 QI 537 (733)
Q Consensus 536 ~l 537 (733)
.|
T Consensus 287 ~~ 288 (291)
T 3mkr_A 287 QY 288 (291)
T ss_dssp HH
T ss_pred Hc
Confidence 66
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=6.1e-14 Score=140.39 Aligned_cols=212 Identities=10% Similarity=0.037 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
...+..++.+|..++..|+ +++|+.+|+++++. .+.+ ..++..+|.+|...|++++|+.+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~---~~~~--------------~~~~~~la~~~~~~~~~~~A~~~ 79 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGD---YEKAAEAFTKAIEE---NKED--------------AIPYINFANLLSSVNELERALAF 79 (243)
T ss_dssp -------------------------CCTTHHHHHTT---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHh---Cccc--------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456778899999999999 99999999999885 3321 23778889999999999999999
Q ss_pred HHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhh
Q 004720 298 VRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLL 377 (733)
Q Consensus 298 l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll 377 (733)
++.+.+. .+.++..++..+.++...|++++|+..+...+..
T Consensus 80 ~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------------------------- 120 (243)
T 2q7f_A 80 YDKALEL----DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA----------------------------------- 120 (243)
T ss_dssp HHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHc----CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------
Confidence 9988875 3456777788899999999999998887655431
Q ss_pred ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHH
Q 004720 378 GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYE 457 (733)
Q Consensus 378 ~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~ 457 (733)
.|+++. .+...|..+++.|+|+
T Consensus 121 ----------------------~~~~~~------------------------------------~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 121 ----------------------GMENGD------------------------------------LFYMLGTVLVKLEQPK 142 (243)
T ss_dssp ----------------------TCCSHH------------------------------------HHHHHHHHHHHTSCHH
T ss_pred ----------------------CCCCHH------------------------------------HHHHHHHHHHHhccHH
Confidence 111110 1223688889999999
Q ss_pred HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHH
Q 004720 458 ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQ 536 (733)
Q Consensus 458 ~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~ 536 (733)
+|+++|+.++...|.+ ..++..++.+|...|++++|+++++++++.+| ++...+.+..++...|++++|++.
T Consensus 143 ~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 143 LALPYLQRAVELNEND-------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp HHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999887744 35789999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHhccCCChHHHHH
Q 004720 537 ILAMTICLDFTTDFLSL 553 (733)
Q Consensus 537 l~~~~~~~~~~~~lL~l 553 (733)
++.+....+.++.....
T Consensus 216 ~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHccCcchHHHHHH
Confidence 99999987777765444
No 47
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.56 E-value=6.7e-13 Score=144.09 Aligned_cols=187 Identities=13% Similarity=0.039 Sum_probs=148.7
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
..+...|..++..|+++.|..+|++|.+..+.. ..+ ......+...+.++...|+++.|+.++.+|.++.+.
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~---~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-----SDD---IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-----CCh---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 356678999999999999999999999875321 111 112346666788999999999999999999999887
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHH
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYE 292 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~e 292 (733)
.+......+..++++|..+...|+ +++|..+|++|+++.++.. + ......++.+||.+|...|+++
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~~~~-~----------~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDDFKH---YDKALPHLEAALELAMDIQ-N----------DRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT-C----------HHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcC-C----------HHHHHHHHHHHHHHHHHCCCHH
Confidence 655445688999999999999999 9999999999999976531 1 2245668999999999999999
Q ss_pred HHHHHHHHHHccCC-CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 293 SVIKCVRVLREGSF-DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 293 kAl~~l~~a~~~~~-~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+|+.+++.+..+.. ...+..+.+.+..+.++...|++++|+..+...+.
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988877221 01233455668899999999999999999876653
No 48
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=8.4e-12 Score=134.40 Aligned_cols=304 Identities=11% Similarity=-0.010 Sum_probs=217.0
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
........-.|...+..|+++.|...+++|++..+. .+ .......+...+.+++..|+++.|+..+.++..
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-------~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP-------GW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-------TC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-------Cc--hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334456667788889999999999999999875421 11 111234566678889999999999999999999
Q ss_pred hhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 209 LLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 209 l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
+.+..+.. ...+..++++|..+...|+ +++|..++++++++........ .+....++.+++.+|...
T Consensus 82 ~~~~~~~~-~~~~~~~~~la~~~~~~G~---~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 82 MARQHDVW-HYALWSLIQQSEILFAQGF---LQTAWETQEKAFQLINEQHLEQ---------LPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCTT---------STHHHHHHHHHHHHHHHT
T ss_pred HHHhcCcH-HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHhcccc---------CcHHHHHHHHHHHHHHHh
Confidence 98875432 3456778899999999999 9999999999999866532110 122345788899999999
Q ss_pred CcHHHHHHHHHHHHccCCCCCC-CCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHH
Q 004720 289 GEYESVIKCVRVLREGSFDGGD-HHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAE 367 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~-~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~ 367 (733)
|++++|..+++.+....+..++ ....++...+.++...|++++|+..+...+...+
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~----------------------- 205 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG----------------------- 205 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-----------------------
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----------------------
Confidence 9999999999988875421011 1123446778888899999999888765542100
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHH
Q 004720 368 TAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCA 447 (733)
Q Consensus 368 ~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g 447 (733)
. ...+ ..+ ........+
T Consensus 206 ------------~-----------------~~~~---~~~-------------------------------~~~~~~~~~ 222 (373)
T 1hz4_A 206 ------------N-----------------GKYH---SDW-------------------------------ISNANKVRV 222 (373)
T ss_dssp ------------T-----------------SCCC---HHH-------------------------------HHHHHHHHH
T ss_pred ------------c-----------------cCcc---hhH-------------------------------HHHHHHHHH
Confidence 0 0000 000 000000134
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC------Ch-HHHHHH
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP------NI-ASAFLK 520 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp------~~-~t~~~~ 520 (733)
..+...|++++|..++..++...+.+. ......+.+++.+|...|++++|.+.+++++...+ .. .....+
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANN---HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTC---GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 556789999999999999998665432 12234578899999999999999999999877643 11 355678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 004720 521 FKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
..++...|+.++|...++.....
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 89999999999999999887665
No 49
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.55 E-value=3e-13 Score=142.07 Aligned_cols=267 Identities=13% Similarity=-0.008 Sum_probs=186.9
Q ss_pred hHHHHHHHHHHHhhhH---HhccC---CcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHH
Q 004720 126 SPAIKSASFYFKTGVV---WHDLK---KYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLA 199 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~---~~~~g---~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A 199 (733)
...++.+...++++.+ |+..+ +++.|..+|++|.. ++..+|++++|
T Consensus 5 ~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------------------~~~~~g~~~~A 56 (292)
T 1qqe_A 5 VELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAAT----------------------------IYRLRKELNLA 56 (292)
T ss_dssp HHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHH----------------------------HHHHTTCTHHH
T ss_pred HHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHH----------------------------HHHHcCCHHHH
Confidence 4566777777776544 45432 47788888877642 44578999999
Q ss_pred HHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHH
Q 004720 200 ITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLR 279 (733)
Q Consensus 200 ~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~ 279 (733)
+.+|.+|..+.+.... ....+.+|.++|..+...|+ +++|+.+|++|+++..... + ....+.++.
T Consensus 57 ~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~~g-~----------~~~~a~~~~ 121 (292)
T 1qqe_A 57 GDSFLKAADYQKKAGN-EDEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTHRG-Q----------FRRGANFKF 121 (292)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT-C----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHcC-C----------HHHHHHHHH
Confidence 9999999999775332 24467889999999999999 9999999999999955421 1 122356899
Q ss_pred HHHHHHhcc-CcHHHHHHHHHHHHccCCCCCCCC----CcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH
Q 004720 280 FISAIHLQK-GEYESVIKCVRVLREGSFDGGDHH----ASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV 354 (733)
Q Consensus 280 ~La~~yl~~-~~~ekAl~~l~~a~~~~~~~~~~~----p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~ 354 (733)
++|.+|... |++++|+.+++.+..+.+ ...+ +.++...+.++...|++++|+..+...+...+.....
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 194 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYA--QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS----- 194 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-----
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-----
Confidence 999999996 999999999999988532 1111 2234667889999999999999887665321100000
Q ss_pred HHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 355 EAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 355 ~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
+ .
T Consensus 195 --------------------------------------~---------~------------------------------- 196 (292)
T 1qqe_A 195 --------------------------------------Q---------W------------------------------- 196 (292)
T ss_dssp --------------------------------------G---------G-------------------------------
T ss_pred --------------------------------------c---------H-------------------------------
Confidence 0 0
Q ss_pred HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCC
Q 004720 435 ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYL--GLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl--~l~~~~~A~e~~~~A~~ldp 512 (733)
.....+.+.|..+...|+|++|+..|+.++.+.|.... ....+.+..++.+|. ..+++++|++.|+++.+++|
T Consensus 197 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 197 ---SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD--SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp ---GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 00002234788899999999999999999999886543 244567788888776 56889999999999999988
Q ss_pred ChHHHHHHHHHHH
Q 004720 513 NIASAFLKFKIYL 525 (733)
Q Consensus 513 ~~~t~~~~~ki~l 525 (733)
.....+...+-.+
T Consensus 272 ~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 272 WKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444333
No 50
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=2.6e-13 Score=140.60 Aligned_cols=280 Identities=14% Similarity=0.067 Sum_probs=185.4
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..+......|..+...|+++.|..+|++|++..+...... . ......+...+.++...|++++|+.++.++..+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--H----PDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS--S----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999999866432100 0 112356667789999999999999999999988
Q ss_pred hhcC-chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc
Q 004720 210 LFGL-FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK 288 (733)
Q Consensus 210 ~~~~-~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~ 288 (733)
.... .......+.+++++|..+...|+ +++|..+|++++++..+..+.. ......++..+|.+|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKD---------HPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHc
Confidence 6431 11123466789999999999999 9999999999999865421111 122455889999999999
Q ss_pred CcHHHHHHHHHHHHccCC-CCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhh
Q 004720 289 GEYESVIKCVRVLREGSF-DGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTA 364 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~-~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~ 364 (733)
|++++|+.+++.+..... ..++.+|. .++..+.++...|++++|+..+...+...+. .
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------------~---- 228 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE--------------R---- 228 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------H----
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------h----
Confidence 999999999988877411 00122343 4577889999999999999998876531000 0
Q ss_pred hHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHH
Q 004720 365 GAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLW 444 (733)
Q Consensus 365 a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW 444 (733)
.+- ...+.....+. . ...+.
T Consensus 229 ----------------------------~~~--~~~~~~~~~~~-~-----------------------------~~~~~ 248 (311)
T 3nf1_A 229 ----------------------------EFG--SVDDENKPIWM-H-----------------------------AEERE 248 (311)
T ss_dssp ----------------------------HHC--------CCHHH-H-----------------------------HHHHH
T ss_pred ----------------------------cCC--CCCcchHHHHH-H-----------------------------HHHHH
Confidence 000 00000000000 0 00111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
..+......+.|.+|+.+|..+.... +..+.++.+++.+|...|++++|.+++++++++.|
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVDS-------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HC-------CCSCCCC---------C-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 24555667788888888888877643 46678899999999999999999999999998866
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=4e-13 Score=129.72 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHH
Q 004720 276 KTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVE 355 (733)
Q Consensus 276 ~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ 355 (733)
.++.+||.+|...|+|++|+.+++.+.+. ++.++.+++..+.++...|++++|+..+...+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------------- 68 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------------- 68 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------
Confidence 48999999999999999999999999987 4678888899999999999999999887654321
Q ss_pred HHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 356 AYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 356 ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
.|++..
T Consensus 69 --------------------------------------------~~~~~~------------------------------ 74 (184)
T 3vtx_A 69 --------------------------------------------DTTSAE------------------------------ 74 (184)
T ss_dssp --------------------------------------------CCCCHH------------------------------
T ss_pred --------------------------------------------CchhHH------------------------------
Confidence 111111
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI 514 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~ 514 (733)
...+.|..+...++|+.|++.+..++...|.+ ...+..+|.+|..+|++++|++.|+++++++| ++
T Consensus 75 ------~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 75 ------AYYILGSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 11136778889999999999999999988755 35689999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
...+.+..++...|++++|++++++..+..+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999888743
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=1.1e-13 Score=155.99 Aligned_cols=219 Identities=9% Similarity=-0.035 Sum_probs=170.7
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCH-HHHHHHHHHHHHHHhcCCCCcccchhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSL-NDALKLMNEALELCEKGLGEARTREETTELK 271 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~-e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~ 271 (733)
.++++.|+..+.++....|.. +..++++|..+...|+ | ++|+.+|++++++ +|.+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~-------a~~~~~lg~~~~~~g~---~~~~A~~~~~~al~~---~p~~----------- 136 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVE-------AQALMLKGKALNVTPD---YSPEAEVLLSKAVKL---EPEL----------- 136 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC-------HHHHHHHHHHHTSSSS---CCHHHHHHHHHHHHH---CTTC-----------
T ss_pred HHHHHHHHHHHHHHhccCchh-------HHHHHHHHHHHHhccc---cHHHHHHHHHHHHhh---CCCC-----------
Confidence 344667777777666555543 3568999999999999 9 9999999999998 5422
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhc---------CChHHHHHHHHHhhhc
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGL---------GRYNEAELELRGMVEI 342 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~---------g~~deAi~~l~~~l~~ 342 (733)
..++..||.+|...|++++|+.+++.+.+.. +. +..++..+.++... |++++|+..+.+.+..
T Consensus 137 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 137 ---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC----KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC----CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 2378899999999999999999999999863 33 56668888888888 7777777776655432
Q ss_pred cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 343 KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 343 ~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
.|++...+
T Consensus 209 ---------------------------------------------------------~p~~~~~~--------------- 216 (474)
T 4abn_A 209 ---------------------------------------------------------DVLDGRSW--------------- 216 (474)
T ss_dssp ---------------------------------------------------------CTTCHHHH---------------
T ss_pred ---------------------------------------------------------CCCCHHHH---------------
Confidence 12221111
Q ss_pred HHHHhhcchhHHHhhHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC
Q 004720 423 VLALFVGDAAAKERIAMHAVLWNCASILFRS--------KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL 494 (733)
Q Consensus 423 v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~--------~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l 494 (733)
.+.|..++.. |+|++|+++|+.++.+.|.. .+.+.++.++|.+|..+
T Consensus 217 ---------------------~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~lg~~~~~~ 271 (474)
T 4abn_A 217 ---------------------YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA----SSNPDLHLNRATLHKYE 271 (474)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG----GGCHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHHHc
Confidence 1234444444 88999999999999987732 25567899999999999
Q ss_pred CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 495 SLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 495 ~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
|++++|.+.+++|++++| ++...+.+..++...|++++|++.+.++
T Consensus 272 g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999 8889999999999999999999876443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=6.4e-13 Score=135.52 Aligned_cols=255 Identities=11% Similarity=0.024 Sum_probs=172.0
Q ss_pred HhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHH
Q 004720 142 WHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLA 221 (733)
Q Consensus 142 ~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La 221 (733)
....|+++.|+..|+++++..+ . .. ......+...+.++...|++++|+.+++++..+.|..+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~------~-~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------ 78 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRA------L-TD---DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE------ 78 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSC------C-CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------
T ss_pred cCccchHHHHHHHHHHHHhccc------c-cC---chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH------
Confidence 3445677777777777775410 0 01 112356677789999999999999999999999887653
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
+++++|..+...|+ +++|+.+|++++++ .|.+. .++..+|.+|...|++++|+.+++.+
T Consensus 79 -~~~~la~~~~~~~~---~~~A~~~~~~al~~---~~~~~--------------~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 79 -VFNYLGIYLTQAGN---FDAAYEAFDSVLEL---DPTYN--------------YAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp -HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCT--------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHccC---HHHHHHHHHHHHhc---Ccccc--------------HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 57889999999999 99999999999998 44221 27889999999999999999999999
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCC
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCH 381 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~ 381 (733)
.+.. +.++.. .....++...|++++|+..+...+...+.....+ ..+..+.... .
T Consensus 138 ~~~~----~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------~ 192 (275)
T 1xnf_A 138 YQDD----PNDPFR-SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNI-------------------S 192 (275)
T ss_dssp HHHC----TTCHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSS-------------------C
T ss_pred HHhC----CCChHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhc-------------------C
Confidence 8853 444433 3344455777999999999987774333222221 1222221111 1
Q ss_pred chHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 004720 382 VSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAE 461 (733)
Q Consensus 382 ~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~ 461 (733)
...++..+.+.+ +..|.. .......+.+.|..+++.|+|++|++
T Consensus 193 --~~~a~~~~~~~~--~~~~~~--------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 193 --EQTLMERLKADA--TDNTSL--------------------------------AEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp --HHHHHHHHHHHC--CSHHHH--------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --HHHHHHHHHHHh--cccccc--------------------------------cccccHHHHHHHHHHHHcCCHHHHHH
Confidence 122233333332 111100 00011234458999999999999999
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
+|+.++...|.+. ...+.++..+|++++|++.|
T Consensus 237 ~~~~al~~~p~~~----------~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 237 LFKLAVANNVHNF----------VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTCCTTC----------HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhCCchhH----------HHHHHHHHHHHHHHhhHHHH
Confidence 9999999988653 23377899999999999987
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=2.9e-12 Score=131.93 Aligned_cols=123 Identities=7% Similarity=-0.007 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHh----cCCCCCHHHHHHHHHHHHHHHhcC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALS----KNETNSLNDALKLMNEALELCEKG 257 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~----~~~~~~~e~A~~~l~~Alel~~~~ 257 (733)
.+...+..+...|++++|+.+++++.+ +..+ ..++++|..+.. .++ +++|+.+|+++++. +
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~-------~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~---~ 72 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN-------SGCFNLGVLYYQGQGVEKN---LKKAASFYAKACDL---N 72 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH-------HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHcCCCcCCC---HHHHHHHHHHHHHC---C
Confidence 445557788889999999999999987 4333 357888888888 888 99999999999886 2
Q ss_pred CCCcccchhhhhhhhcHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCCh
Q 004720 258 LGEARTREETTELKGLKFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRY 329 (733)
Q Consensus 258 ~~~~~~~~~~~~~~el~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~ 329 (733)
+ ...+..||.+|.. .+++++|+.+++.+.+. .+|.+.+..+.++.. .+++
T Consensus 73 --~--------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 73 --Y--------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL------KYAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp --C--------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred --C--------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc------CCccHHHHHHHHHHcCCCcccCH
Confidence 1 1267788999988 88999999999888773 367777888888888 8888
Q ss_pred HHHHHHHHHhhh
Q 004720 330 NEAELELRGMVE 341 (733)
Q Consensus 330 deAi~~l~~~l~ 341 (733)
++|+..+.+.+.
T Consensus 131 ~~A~~~~~~a~~ 142 (273)
T 1ouv_A 131 KKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888776553
No 55
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=8.9e-13 Score=143.12 Aligned_cols=258 Identities=12% Similarity=0.022 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.++..++..+...|+++.|+..+.+|..+.+..+. ....+.+++++|..+...|+ +++|+.++++|+++.++....
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQ---THVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHhCCCc
Confidence 35567888999999999999999999999876443 35688899999999999999 999999999999997764321
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCC--CCCcHHHHHHHHHHhcCChHHHHHHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGD--HHASLPVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~--~~p~~~~lk~~il~~~g~~deAi~~l~~ 338 (733)
....+.++.++|.+|...|+|++|+.+++.+..+....++ ..+.+++..+.++...|++++|+..+..
T Consensus 178 ----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 178 ----------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1134668999999999999999999999888774210000 0112346677788888888888888765
Q ss_pred hhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhh
Q 004720 339 MVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELV 418 (733)
Q Consensus 339 ~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~ 418 (733)
.+.. .+ .. .+|..
T Consensus 248 al~~--------------------------~~----------------------~~----~~~~~--------------- 260 (378)
T 3q15_A 248 AAKV--------------------------SR----------------------EK----VPDLL--------------- 260 (378)
T ss_dssp HHHH--------------------------HH----------------------HH----CGGGH---------------
T ss_pred HHHH--------------------------HH----------------------hh----CChhH---------------
Confidence 5330 00 00 11100
Q ss_pred hHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC--
Q 004720 419 SDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL-- 496 (733)
Q Consensus 419 ~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~-- 496 (733)
...+.+.|..+++.|+|++|+++|+.++.+.+.... +.....+..++..|...++
T Consensus 261 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 261 ---------------------PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH--KFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC--SCHHHHHHHHHHHHSSSCCHH
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhCCCcHH
Confidence 113446899999999999999999999987764321 2333356888999999999
Q ss_pred -HHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 497 -IDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 497 -~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
+.+|++++++.. ..| .......++.+|...|++++|+++++.....
T Consensus 318 ~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 318 KIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888887631 122 3345567899999999999999999887664
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=3.6e-12 Score=125.38 Aligned_cols=208 Identities=11% Similarity=0.020 Sum_probs=162.8
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
..+++.+|..++..|+ +++|+.+|++++++ .+.+ ..++..++.+|...|++++|+.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~---~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 67 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQD---YRQATASIEDALKS---DPKN--------------ELAWLVRAEIYQYLKVNDKAQESFRQ 67 (225)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---HHHHHHHHHHHHHh---Cccc--------------hHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4568888999999999 99999999999987 4321 12678889999999999999999988
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhc-CChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhcc
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGL-GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGR 379 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~-g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~ 379 (733)
+... .+.++..++..+.++... |++++|+..+...+..+
T Consensus 68 a~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------ 107 (225)
T 2vq2_A 68 ALSI----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP------------------------------------ 107 (225)
T ss_dssp HHHH----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTST------------------------------------
T ss_pred HHHh----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc------------------------------------
Confidence 8875 345667778888889999 99998888876554310
Q ss_pred CCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHH
Q 004720 380 CHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459 (733)
Q Consensus 380 ~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A 459 (733)
..|++.. .+.+.|..+++.|+|++|
T Consensus 108 -------------------~~~~~~~------------------------------------~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 108 -------------------TYPTPYI------------------------------------ANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp -------------------TCSCHHH------------------------------------HHHHHHHHHHHTTCHHHH
T ss_pred -------------------CCcchHH------------------------------------HHHHHHHHHHHcCCHHHH
Confidence 1111100 122468888899999999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHhcCCHHHHHHHH
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP--NIASAFLKFKIYLQKNDQEGAINQI 537 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp--~~~t~~~~~ki~l~~gd~e~Al~~l 537 (733)
+++|+.++...|.+ ...+..++.+|...|++++|.++++++++.+| ++........++...|+.+.|...+
T Consensus 133 ~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 133 EAYLKRSLAAQPQF-------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHSTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999887644 35688999999999999999999999999888 4566667788888999999999999
Q ss_pred HHHHhccCCChHH
Q 004720 538 LAMTICLDFTTDF 550 (733)
Q Consensus 538 ~~~~~~~~~~~~l 550 (733)
+.+....+.+++.
T Consensus 206 ~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 206 AQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHCTTCHHH
T ss_pred HHHHHhCCCCHHH
Confidence 9988776666653
No 57
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.51 E-value=2.7e-10 Score=128.17 Aligned_cols=348 Identities=11% Similarity=0.004 Sum_probs=236.6
Q ss_pred HHHHHH----ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHh----cCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 187 SRTAWE----VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALS----KNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 187 A~~a~~----~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~----~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
+..+.. .+++++|+..++++.+. ..+ ..++.+|..+.. .++ +++|+.||+++.+. +
T Consensus 46 g~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~---~- 109 (490)
T 2xm6_A 46 GYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT-------PAEYVLGLRYMNGEGVPQD---YAQAVIWYKKAALK---G- 109 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH-------HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---T-
T ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHC---C-
Confidence 455666 89999999999999865 333 358888888888 788 99999999999875 2
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYN 330 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~d 330 (733)
+ ...+..|+.+|.. .+++++|+.+++.+... .+|.+.+..+.++.. .++++
T Consensus 110 -~--------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 110 -L--------------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------GRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp -C--------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred -C--------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 1 1267789999988 77999999999998763 467888888888887 68999
Q ss_pred HHHHHHHHhhhccCCchHHHHhHHHHHHH----hch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchH
Q 004720 331 EAELELRGMVEIKGIPECIWVSAVEAYFQ----AAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEA 405 (733)
Q Consensus 331 eAi~~l~~~l~~~~~~~~~~ls~~~ly~~----~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~ 405 (733)
+|+..+.+.+.. + ....+..++.+|.. ... +.|++.+++.+. ..++ .....+...+....+.+.+
T Consensus 169 ~A~~~~~~a~~~-~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~~--~a~~~lg~~y~~g~g~~~~-- 238 (490)
T 2xm6_A 169 MAREWYSKAAEQ-G-NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT----SGDE--LGQLHLADMYYFGIGVTQD-- 238 (490)
T ss_dssp HHHHHHHHHHHT-T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCH--HHHHHHHHHHHHTSSSCCC--
T ss_pred HHHHHHHHHHHC-C-CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH----CCCH--HHHHHHHHHHHcCCCCCCC--
Confidence 999999888753 2 34455677788876 223 677777776532 1111 1222222222110111212
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCchhhhhhH
Q 004720 406 AVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPFDVENRILRA 481 (733)
Q Consensus 406 ~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~~~~~~~~~a 481 (733)
..++... ...... . ......++.|..+.. .+++++|++||+.+.+. ...
T Consensus 239 --~~~A~~~--------~~~a~~-------~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---------~~~ 291 (490)
T 2xm6_A 239 --YTQSRVL--------FSQSAE-------Q-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---------GNS 291 (490)
T ss_dssp --HHHHHHH--------HHHHHT-------T-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---------TCH
T ss_pred --HHHHHHH--------HHHHHH-------C-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---------CCH
Confidence 1111111 000000 0 011234457888888 89999999999999764 123
Q ss_pred HHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCChHHHHH
Q 004720 482 KSFRVLCLCYLGL-----SLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKN---DQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 482 kl~r~la~cyl~l-----~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~g---d~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
..+.+++.+|... +++++|++.+++|.+.+ ++..++.+..++...| |.++|++.+++.... .+++....
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 368 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFN 368 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHH
Confidence 5789999999998 99999999999998764 4567778888888766 889999999999886 34654433
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHh---hcCChhHHHHHHHHHHHHh
Q 004720 554 AAHEAVA----CQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQ---ETGNESEVLKYMKRAHART 620 (733)
Q Consensus 554 a~~~a~~----~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~---~~~~~~~~l~~~~~A~~~l 620 (733)
-...... .++.+.|+..++...+. + .. .+.-.+-.+..+ .+++.++...+|++|...-
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~---~~---~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQ---G---LS---AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhC---C---CH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3344455 67888888888877762 2 11 222234344333 2678889999999999753
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=6.5e-12 Score=123.52 Aligned_cols=203 Identities=12% Similarity=0.023 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH
Q 004720 275 FKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV 354 (733)
Q Consensus 275 ~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~ 354 (733)
..++..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------ 71 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------------ 71 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------
Confidence 447888999999999999999999988875 3456777788889999999999998887655431
Q ss_pred HHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 355 EAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 355 ~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
.|++..
T Consensus 72 ---------------------------------------------~~~~~~----------------------------- 77 (225)
T 2vq2_A 72 ---------------------------------------------KPDSAE----------------------------- 77 (225)
T ss_dssp ---------------------------------------------CTTCHH-----------------------------
T ss_pred ---------------------------------------------CCCChH-----------------------------
Confidence 111100
Q ss_pred HhhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 435 ERIAMHAVLWNCASILFRS-KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~-~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|..++.. |+|++|+++|+.++. .|.+ +....++.+++.+|...|++++|+++++++++.+|
T Consensus 78 -------~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 78 -------INNNYGWFLCGRLNRPAESMAYFDKALA-DPTY----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp -------HHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -------HHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 122368888999 999999999999998 4333 35567899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLD-FTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~-~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
++...+.+..++...|++++|++.++.+....+ .++..+...+......|+.+.+...++.+.+..+
T Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999998887 8888888888888889999999888888887443
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=5.9e-12 Score=127.16 Aligned_cols=205 Identities=17% Similarity=0.081 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
...++..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------- 101 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD---------- 101 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------
Confidence 3568999999999999999999999988875 35567788899999999999999999877554311
Q ss_pred HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 354 VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 354 ~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
|++..
T Consensus 102 -----------------------------------------------~~~~~---------------------------- 106 (252)
T 2ho1_A 102 -----------------------------------------------SRNAR---------------------------- 106 (252)
T ss_dssp -----------------------------------------------TTCHH----------------------------
T ss_pred -----------------------------------------------cCcHH----------------------------
Confidence 11100
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 434 KERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|..++..|+|++|+++|+.++. .+.+ +....++.+++.+|...|++++|+++++++++.+|
T Consensus 107 --------~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 107 --------VLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLY----PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTC----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred --------HHHHHHHHHHHHhHHHHHHHHHHHHHh-CccC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 122368888999999999999999998 2222 35678899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
++...+.+..++...|++++|+..++.+....+.+++.+...+......|+.+.|...++.+++..+.
T Consensus 174 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 88899999999999999999999999999888878887777778888899999999999999985433
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=2e-12 Score=129.48 Aligned_cols=211 Identities=11% Similarity=0.032 Sum_probs=159.9
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC-CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL-GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~-~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
..+++.|..++..|+ +++|+.+|++++++ .+ .+ ..++..+|.+|...|++++|+.+++.
T Consensus 8 ~~~~~~g~~~~~~~~---~~~A~~~~~~al~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~ 67 (228)
T 4i17_A 8 NQLKNEGNDALNAKN---YAVAFEKYSEYLKL---TNNQD--------------SVTAYNCGVCADNIKKYKEAADYFDI 67 (228)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---TTTCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC---HHHHHHHHHHHHhc---cCCCC--------------cHHHHHHHHHHHHhhcHHHHHHHHHH
Confidence 468999999999999 99999999999998 43 11 12677799999999999999999999
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccC
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRC 380 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~ 380 (733)
+.+. .+.++.+++..+.++...|++++|+..+...+...|....+
T Consensus 68 al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------- 112 (228)
T 4i17_A 68 AIKK----NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI------------------------------- 112 (228)
T ss_dssp HHHT----TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-------------------------------
T ss_pred HHHh----CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-------------------------------
Confidence 9886 45677788999999999999999999988766422211110
Q ss_pred CchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHH
Q 004720 381 HVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASA 460 (733)
Q Consensus 381 ~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~ 460 (733)
+. .+...+.+.|..+++.|+|++|+
T Consensus 113 --------------------------~~-----------------------------~~~~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 113 --------------------------EK-----------------------------LYAIYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp --------------------------HH-----------------------------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HH-----------------------------HHHHHHHHHhHHHHHhccHHHHH
Confidence 00 00112335899999999999999
Q ss_pred HHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004720 461 EMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 461 ~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~ 539 (733)
++|+.++...|.+ ..+..+.+++.+|...| ...++++..+.+ .+.. .........+++++|+.++++
T Consensus 138 ~~~~~al~~~p~~-----~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 138 ENYKHATDVTSKK-----WKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEK--YASEKAKADAAFKKAVDYLGE 205 (228)
T ss_dssp HHHHHHTTSSCHH-----HHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCc-----ccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986631 05678999999997654 456777777766 4322 233344556788999999999
Q ss_pred HHhccCCChHHHHHH
Q 004720 540 MTICLDFTTDFLSLA 554 (733)
Q Consensus 540 ~~~~~~~~~~lL~la 554 (733)
..+..+.+++.+.+-
T Consensus 206 a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 206 AVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HhhcCCCCHHHHHHH
Confidence 999988888766554
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=3.8e-11 Score=136.52 Aligned_cols=407 Identities=9% Similarity=-0.015 Sum_probs=242.3
Q ss_pred hccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHH
Q 004720 143 HDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLAN 222 (733)
Q Consensus 143 ~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~ 222 (733)
...|+++.|...|++|++..|. . ..+....+......|+++.|...|+||+...|. .+
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~--------~------~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~~------- 80 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPS--------S------GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-ID------- 80 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-HH-------
T ss_pred HHhCCHHHHHHHHHHHHHHCCC--------C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hH-------
Confidence 4578999999999999987652 1 234445567778899999999999999998873 32
Q ss_pred HHHHHhHHH-HhcCCCCCHHHHH----HHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc---------c
Q 004720 223 QYLTFAKSA-LSKNETNSLNDAL----KLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ---------K 288 (733)
Q Consensus 223 ~~~~~G~~~-~~~~~~~~~e~A~----~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~---------~ 288 (733)
+.+..+... -..|+ +++|. .+|+++++.+..++.. ..+|...+..... .
T Consensus 81 lw~~~~~~~~~~~~~---~~~a~~~~~~~~~~al~~~g~~~~~--------------~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 81 LWKCYLSYVRETKGK---LPSYKEKMAQAYDFALDKIGMEIMS--------------YQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHHHHHHHHHHHTTT---STTHHHHHHHHHHHHHHHTTTSTTC--------------HHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHHCCCCccc--------------HHHHHHHHHHHhcCCCcccHHHH
Confidence 233344322 23455 55554 4778887764332210 1245444444433 5
Q ss_pred CcHHHHHHHHHHHHccCCCCCCCCCcHH-HHHHHHH--------------HhcCChHHHHHHHHH------hhhc-----
Q 004720 289 GEYESVIKCVRVLREGSFDGGDHHASLP-VLAMKAW--------------LGLGRYNEAELELRG------MVEI----- 342 (733)
Q Consensus 289 ~~~ekAl~~l~~a~~~~~~~~~~~p~~~-~lk~~il--------------~~~g~~deAi~~l~~------~l~~----- 342 (733)
|++++|..+|+.+.+.+ .++... +....-+ ...+++++|...+.. .+..
T Consensus 144 ~~~~~a~~~y~~al~~P-----~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVNP-----MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp HHHHHHHHHHHHHTTSC-----CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred hHHHHHHHHHHHHHhch-----hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 78999999999998742 222211 1111111 123456666554432 2211
Q ss_pred cCCc-------hHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCch--HHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 004720 343 KGIP-------ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS--AKAAVRMAHRVAGDEGDGVSEAAVKLRAKA 413 (733)
Q Consensus 343 ~~~~-------~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~--~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~ 413 (733)
++.. ..+|...+.+-..+.. .-.+.. ...++.+.++.+ ...|.++..|+..+..
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~---------------~~~~~~~~~~~a~~~y~~al--~~~p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPL---------------RTEDQTLITKRVMFAYEQCL--LVLGHHPDIWYEAAQY 281 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSS---------------CCSCSHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCc---------------cCCcchhHHHHHHHHHHHHH--HhCCCCHHHHHHHHHH
Confidence 1110 1222222111110000 000000 123334455555 3456666666555544
Q ss_pred HHH-------hhhHH-------HHHHHhhcchhHHHhhHHHHHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhh
Q 004720 414 VAE-------LVSDE-------RVLALFVGDAAAKERIAMHAVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRI 478 (733)
Q Consensus 414 l~~-------l~~~e-------~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~ 478 (733)
+.. ....+ .+.+++. +......+-...+|. .|..+.+.|++++|.+.|+.++...|.+.
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~--~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---- 355 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYE--RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---- 355 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHH--HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH----
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHH--HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc----
Confidence 432 11111 2333322 000001112234554 78888889999999999999998766442
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH-HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI-YLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki-~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+.++.+.+.++.+.|++++|+++|++|++..| ..........+ +...|+.++|...++...+..+.++++...-+.
T Consensus 356 --~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 356 --TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 433 (530)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35788889999999999999999999999887 44443333323 335899999999999888887878887777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 004720 557 EAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~ 622 (733)
.-.+.|+.+.|+..++..++..+.+ |.....+....+++. ...|+.+.+.++++++.+..++
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~---~~~~~~lw~~~~~~e-~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLP---PEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSC---GGGCHHHHHHHHHHH-HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCC---HHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCch
Confidence 7777899999999999888843333 333334443344442 3358888888899998887764
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=9.7e-12 Score=127.99 Aligned_cols=222 Identities=13% Similarity=0.064 Sum_probs=175.5
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhh
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWE----VLEQNLAITLLNRAKCL 209 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~----~g~~~~A~~~~~rA~~l 209 (733)
.....|..++..|+++.|..+|++|++.- . ...+...+.++.. .|++++|+.+++++.++
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK----------E------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------C------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 44677999999999999999999999711 1 1234445777888 99999999999999977
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHh----cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHH
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALS----KNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIH 285 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~----~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~y 285 (733)
. .+ ..++++|..+.. .++ +++|+.+|+++++. + + ...+..|+.+|
T Consensus 72 ~--~~-------~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~---~--~--------------~~a~~~lg~~~ 120 (273)
T 1ouv_A 72 N--YS-------NGCHLLGNLYYSGQGVSQN---TNKALQYYSKACDL---K--Y--------------AEGCASLGGIY 120 (273)
T ss_dssp T--CH-------HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---T--C--------------HHHHHHHHHHH
T ss_pred C--CH-------HHHHHHHHHHhCCCCcccC---HHHHHHHHHHHHHc---C--C--------------ccHHHHHHHHH
Confidence 4 22 458899999999 999 99999999999986 2 1 12788899999
Q ss_pred hc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHHHHhHHHHH
Q 004720 286 LQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECIWVSAVEAY 357 (733)
Q Consensus 286 l~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly 357 (733)
.. .+++++|+.+++.+.+. .++...+..+.++.. .+++++|+..+.+.+..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------------- 179 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------------- 179 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------
T ss_pred HcCCCcccCHHHHHHHHHHHHhc------CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---------------
Confidence 98 89999999999999873 256666777778777 78888888776644321
Q ss_pred HHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhh
Q 004720 358 FQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERI 437 (733)
Q Consensus 358 ~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~ 437 (733)
+.+
T Consensus 180 -----------------------------------------~~~------------------------------------ 182 (273)
T 1ouv_A 180 -----------------------------------------KDS------------------------------------ 182 (273)
T ss_dssp -----------------------------------------TCH------------------------------------
T ss_pred -----------------------------------------CCH------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHh
Q 004720 438 AMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDRAQEYITEAEK 509 (733)
Q Consensus 438 ~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~A~e~~~~A~~ 509 (733)
..+++.|..+.. .++|++|++||+.++...+ ...+.+++.+|.. .+++++|++++++|.+
T Consensus 183 ---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 183 ---PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp ---HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 012236777778 9999999999999987633 3568999999999 9999999999999999
Q ss_pred hCC
Q 004720 510 LEP 512 (733)
Q Consensus 510 ldp 512 (733)
++|
T Consensus 251 ~~~ 253 (273)
T 1ouv_A 251 LGA 253 (273)
T ss_dssp HTC
T ss_pred cCC
Confidence 988
No 63
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=7.9e-11 Score=126.74 Aligned_cols=294 Identities=14% Similarity=-0.004 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
..++..++..+...|+++.|+..++++....|... ....+.+++++|..+...|+ +++|..++++++++.....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~- 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW--FYSRIVATSVLGEVLHCKGE---LTRSLALMQQTEQMARQHD- 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC--HHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHhcC-
Confidence 45667788899999999999999999998876432 23456678899999999999 9999999999999865431
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCc---HHHHHHHHHHhcCChHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHAS---LPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~---~~~lk~~il~~~g~~deAi~~ 335 (733)
+ ......++..++.+|...|++++|+.+++.+..... .....+|. .+...+.++...|++++|+..
T Consensus 88 ~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 88 V----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp C----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1 112345788899999999999999999988776432 11222233 335677888999999999988
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+...+...+ ...+..
T Consensus 158 ~~~al~~~~-----------------------------------------------------~~~~~~------------ 172 (373)
T 1hz4_A 158 ARSGIEVLS-----------------------------------------------------SYQPQQ------------ 172 (373)
T ss_dssp HHHHHHHTT-----------------------------------------------------TSCGGG------------
T ss_pred HHHHHHHhh-----------------------------------------------------ccCcHH------------
Confidence 775543100 000000
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
....+++.|..+...|+|++|..+|+.++.+.+.........+.....++.++...|
T Consensus 173 -----------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 173 -----------------------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp -----------------------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 011234578889999999999999999987644221100122223345667799999
Q ss_pred CHHHHHHHHHHHHhhCC-Ch----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--h----HHHHHHHHHHHHcCCH
Q 004720 496 LIDRAQEYITEAEKLEP-NI----ASAFLKFKIYLQKNDQEGAINQILAMTICLDFT--T----DFLSLAAHEAVACQAL 564 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp-~~----~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~--~----~lL~la~~~a~~~~~~ 564 (733)
++++|.+.+.+++...| .. ........++...|++++|+..++......+.. + +.+...+......|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 99999999999988776 31 234567899999999999999999887654211 1 2444445556678888
Q ss_pred HHHHHHHHHHHhh
Q 004720 565 SVAVAALSNLLNF 577 (733)
Q Consensus 565 ~~a~~aL~~Ll~~ 577 (733)
+.|...+...+..
T Consensus 310 ~~A~~~l~~al~~ 322 (373)
T 1hz4_A 310 SDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776663
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2e-12 Score=133.93 Aligned_cols=267 Identities=15% Similarity=0.036 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc-hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF-EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~-~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
...+...+.+++..|++++|+.+++++..+..... ......+.+++.+|..+...|+ +++|..+|++++++.++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK---YKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHh
Confidence 46677789999999999999999999999754311 1124467789999999999999 9999999999999865431
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCC---cHHHHHHHHHHhcCChHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHA---SLPVLAMKAWLGLGRYNEAEL 334 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p---~~~~lk~~il~~~g~~deAi~ 334 (733)
+.. .+....++..+|.+|...|++++|+.+++.+.+... ..++.+| ..++..+.++...|++++|+.
T Consensus 104 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 104 GKD---------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp CTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCC---------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 111 123455899999999999999999999988876410 0002223 344778889999999999998
Q ss_pred HHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHH
Q 004720 335 ELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAV 414 (733)
Q Consensus 335 ~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l 414 (733)
.+...+.. .+ .. ..++++.
T Consensus 175 ~~~~a~~~--------------------------~~----------------------~~----~~~~~~~--------- 193 (311)
T 3nf1_A 175 YYQRALEI--------------------------YQ----------------------TK----LGPDDPN--------- 193 (311)
T ss_dssp HHHHHHHH--------------------------HH----------------------HT----SCTTCHH---------
T ss_pred HHHHHHHH--------------------------HH----------------------HH----hCCCCHH---------
Confidence 87755431 00 00 0111100
Q ss_pred HHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---------CchhhhhhHHHHH
Q 004720 415 AELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPF---------DVENRILRAKSFR 485 (733)
Q Consensus 415 ~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~---------~~~~~~~~akl~r 485 (733)
....+.+.|..++..|+|++|+++|+.++...+. ... .......+.
T Consensus 194 ------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~ 248 (311)
T 3nf1_A 194 ------------------------VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP-IWMHAEERE 248 (311)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC-HHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHHH
Confidence 0112335799999999999999999999975431 111 012344555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 486 VLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 486 ~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.++..+...+.+.+|...+.++...+| .+.+.+.+..++...|++++|+++++......
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 666666777788888889999988888 78888899999999999999999999887653
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=3.3e-12 Score=129.90 Aligned_cols=183 Identities=19% Similarity=0.069 Sum_probs=136.2
Q ss_pred HHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC-chhHHH
Q 004720 141 VWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL-FEHYKS 219 (733)
Q Consensus 141 ~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~-~~~~~~ 219 (733)
.+...|+++.|...|++|++......... .. .....+...+.++...|++++|+.++.++..+.... ......
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHD--HP----DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA 83 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSS--SH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 35678999999999999999887543111 11 124566777999999999999999999999886331 112245
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
.+.+++++|..+...|+ +++|+.+|++++++.++..+.. .+....++..+|.+|...|++++|+.+++
T Consensus 84 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 151 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKF---------HPDVAKQLNNLALLCQNQGKAEEVEYYYR 151 (283)
T ss_dssp HHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67789999999999999 9999999999999966531110 12345589999999999999999999998
Q ss_pred HHHccCC-CCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 300 VLREGSF-DGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 300 ~a~~~~~-~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
.+.+... ..++.+| ..++..+.++...|++++|+..+...+.
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8877410 0012234 3457888999999999999999876653
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=7.9e-12 Score=125.04 Aligned_cols=210 Identities=10% Similarity=0.026 Sum_probs=153.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCC-CCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH
Q 004720 276 KTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGD-HHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV 354 (733)
Q Consensus 276 ~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~-~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~ 354 (733)
..+..+|.+|+..|+|++|+.+++.+.... + .++..++..+.++...|++++|+..+.+.+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------ 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT----NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK------------ 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------------
Confidence 378888999999999999999999888853 3 56677788899999999999999887755431
Q ss_pred HHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 355 EAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 355 ~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
.|++..
T Consensus 72 ---------------------------------------------~p~~~~----------------------------- 77 (228)
T 4i17_A 72 ---------------------------------------------NYNLAN----------------------------- 77 (228)
T ss_dssp ---------------------------------------------TCSHHH-----------------------------
T ss_pred ---------------------------------------------CcchHH-----------------------------
Confidence 221211
Q ss_pred HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-
Q 004720 435 ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN- 513 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~- 513 (733)
.+.+.|..+++.|+|++|+++|+.++...|.+.......+.++.++|.+|..+|++++|++.|+++++++|+
T Consensus 78 -------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 150 (228)
T 4i17_A 78 -------AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK 150 (228)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH
T ss_pred -------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence 122378899999999999999999999999775333456788999999999999999999999999999995
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHH
Q 004720 514 --IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVV 591 (733)
Q Consensus 514 --~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~ 591 (733)
+...+.+..++...|+ ..++.+.......+.... .......+..+.|+..++..++..+.+ ..+...
T Consensus 151 ~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~~----~~~~~~ 219 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSPNR----TEIKQM 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCC----HHHHHH
Confidence 4566678888876554 334555555444443221 222334456788888888888844333 334444
Q ss_pred HH
Q 004720 592 LR 593 (733)
Q Consensus 592 lR 593 (733)
+.
T Consensus 220 l~ 221 (228)
T 4i17_A 220 QD 221 (228)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 67
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.42 E-value=4.7e-11 Score=125.23 Aligned_cols=101 Identities=16% Similarity=-0.016 Sum_probs=82.8
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH-------
Q 004720 445 NCASILFRS-KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA------- 515 (733)
Q Consensus 445 ~~g~~~~k~-~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~------- 515 (733)
+.|..+... |+|++|+++|+.++.+.|.+.. +...+.++.++|.+|..+|+|++|+++|+++++++| +..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 368888886 9999999999999998874422 234578899999999999999999999999999988 433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
..+.+..++...|++++|+.+++......+.
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456788999999999999999998876553
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=5.2e-12 Score=142.36 Aligned_cols=218 Identities=14% Similarity=0.018 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHh
Q 004720 150 LASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQ-NLAITLLNRAKCLLFGLFEHYKSLANQYLTFA 228 (733)
Q Consensus 150 ~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~-~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G 228 (733)
....-+++|+..++....... .. ..++..++.++...|++ ++|+.++++++.+.|..+. +++++|
T Consensus 79 ~~~~~~~~al~~l~~~~~~~~-~~------a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~-------a~~~lg 144 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGSAQ-VE------AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE-------AWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CC------HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCc-hh------HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH-------HHHHHH
Confidence 344456666655553221111 11 35777889999999999 9999999999999988653 588999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc---------CcHHHHHHHHH
Q 004720 229 KSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK---------GEYESVIKCVR 299 (733)
Q Consensus 229 ~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~---------~~~ekAl~~l~ 299 (733)
..+...|+ +++|+.+|++++++ +|. ..++..+|.+|... |++++|+.+++
T Consensus 145 ~~~~~~g~---~~~A~~~~~~al~~---~p~---------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~ 203 (474)
T 4abn_A 145 EVYWKKGD---VTSAHTCFSGALTH---CKN---------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203 (474)
T ss_dssp HHHHHHTC---HHHHHHHHHHHHTT---CCC---------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC---HHHHHHHHHHHHhh---CCC---------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH
Confidence 99999999 99999999999988 431 13788999999999 99999999999
Q ss_pred HHHccCCCCCCCCCcHHHHHHHHHHhc--------CChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHH
Q 004720 300 VLREGSFDGGDHHASLPVLAMKAWLGL--------GRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKG 371 (733)
Q Consensus 300 ~a~~~~~~~~~~~p~~~~lk~~il~~~--------g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~ 371 (733)
.+.+. .+.++..++..+.++... |++++|+..+...+..
T Consensus 204 ~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------------------- 250 (474)
T 4abn_A 204 LAVQM----DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV----------------------------- 250 (474)
T ss_dssp HHHHH----CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHh----CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----------------------------
Confidence 99986 466778888888888888 7788887776655431
Q ss_pred HHHhhhccCCchHHHHHHHHHHhhcCCCCC---cchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHH
Q 004720 372 VFLGLLGRCHVSAKAAVRMAHRVAGDEGDG---VSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCAS 448 (733)
Q Consensus 372 ~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp---~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~ 448 (733)
.| ++. ..+.+.|.
T Consensus 251 ----------------------------~p~~~~~~------------------------------------~~~~~lg~ 266 (474)
T 4abn_A 251 ----------------------------DRKASSNP------------------------------------DLHLNRAT 266 (474)
T ss_dssp ----------------------------CGGGGGCH------------------------------------HHHHHHHH
T ss_pred ----------------------------CCCcccCH------------------------------------HHHHHHHH
Confidence 11 111 12335899
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
.++..|+|++|+++|+.++...|.+ ...+.+++.++..+|++++|++.+.+
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~-------~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAW-------PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998755 35789999999999999999987753
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.39 E-value=1.8e-11 Score=125.42 Aligned_cols=213 Identities=11% Similarity=0.068 Sum_probs=154.5
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..+|+.|..++..|+ |++|+.+|+++++. .|.+. ....++..+|.+|...|+|++|+..++.+
T Consensus 16 ~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~---~p~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 16 QEAFERAMEFYNQGK---YDRAIEYFKAVFTY---GRTHE-----------WAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHGGG---CSCST-----------THHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHh---CCCCc-----------chHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 468999999999999 99999999999887 44321 23448889999999999999999999999
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHh--------cCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHH
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLG--------LGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVF 373 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~--------~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l 373 (733)
.+..++ ++..|.+++..+.++.. .|++++|+..+...+...|...... ....
T Consensus 79 l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----------------~a~~--- 138 (261)
T 3qky_A 79 IQIYQI-DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD----------------DATQ--- 138 (261)
T ss_dssp HHHCTT-CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH----------------HHHH---
T ss_pred HHHCCC-CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH----------------HHHH---
Confidence 886320 11224466899999999 8999999999988774333221110 0000
Q ss_pred HhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhc
Q 004720 374 LGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRS 453 (733)
Q Consensus 374 ~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~ 453 (733)
.+. .+.. .+....++.|..+++.
T Consensus 139 -------------------~~~-----------------~~~~---------------------~~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 139 -------------------KIR-----------------ELRA---------------------KLARKQYEAARLYERR 161 (261)
T ss_dssp -------------------HHH-----------------HHHH---------------------HHHHHHHHHHHHHHHT
T ss_pred -------------------HHH-----------------HHHH---------------------HHHHHHHHHHHHHHHc
Confidence 000 0000 0001245689999999
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhhCC-ChHH---HHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL----------SLIDRAQEYITEAEKLEP-NIAS---AFL 519 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l----------~~~~~A~e~~~~A~~ldp-~~~t---~~~ 519 (733)
|+|++|+..|+.++..+|.+. .....+.+++.||..+ |++++|++.++++++.+| ++.. ...
T Consensus 162 g~~~~A~~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAYPDTP----WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTST----THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 999999999999999988652 4567899999999988 999999999999999999 6543 334
Q ss_pred HHHHHHhcCCHHH
Q 004720 520 KFKIYLQKNDQEG 532 (733)
Q Consensus 520 ~~ki~l~~gd~e~ 532 (733)
+..++...+++++
T Consensus 238 l~~~~~~~~~~~~ 250 (261)
T 3qky_A 238 YTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh
Confidence 4555555444443
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=7.7e-11 Score=124.37 Aligned_cols=230 Identities=11% Similarity=-0.014 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCH-------HHHHHHHHHHHH-HHhcCCCCcccchhhh
Q 004720 197 NLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSL-------NDALKLMNEALE-LCEKGLGEARTREETT 268 (733)
Q Consensus 197 ~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~-------e~A~~~l~~Ale-l~~~~~~~~~~~~~~~ 268 (733)
+.|+..|++++...|..+.....++..+...|..+...|+ + ++|...|++|++ + +|.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~A~~~~~rAl~~~---~p~~-------- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD---MNNAKLFSDEAANIYERAISTL---LKKN-------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHHHHHTTT---TTTC--------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccc---hhhcccchHHHHHHHHHHHHHh---Cccc--------
Confidence 6899999999999999887644444444444433334566 5 899999999998 5 3311
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCc-HHHHHHHHHHhcCChHHHHHHHHHhhhccCCch
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHAS-LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPE 347 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~-~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~ 347 (733)
..+|..++..+...|++++|..+++.+.+.+ +.+|. ++...+.++...|++++|+..+.+.+...+...
T Consensus 99 ------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 168 (308)
T 2ond_A 99 ------MLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 168 (308)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS----SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Confidence 1278889999999999999999999999863 45665 677778888888888888887776654222111
Q ss_pred HHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004720 348 CIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF 427 (733)
Q Consensus 348 ~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~ 427 (733)
.+|+
T Consensus 169 ~~~~---------------------------------------------------------------------------- 172 (308)
T 2ond_A 169 HVYV---------------------------------------------------------------------------- 172 (308)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1110
Q ss_pred hcchhHHHhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 428 VGDAAAKERIAMHAVLWNCASILF-RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 428 ~g~~~~~~~~~~~~llW~~g~~~~-k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
..+...+ ..|++++|...|+.++...|.+ ..++.+++..+.++|++++|+.+|++
T Consensus 173 -----------------~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 173 -----------------TAALMEYYCSKDKSVAFKIFELGLKKYGDI-------PEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp -----------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0111212 3688888888888888876643 35678888888888888888888888
Q ss_pred HHhh---CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 507 AEKL---EPN--IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 507 A~~l---dp~--~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
+++. +|+ ..............|+.++|...++++....+.+++.
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 8875 442 2233334556667788888888888888776554443
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=7.5e-12 Score=148.12 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhH
Q 004720 274 KFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 274 ~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
-+.++.+||.+|.+.|++++|+.+++.+.++ .+.++.+++..+.++...|++++|+..+++.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----------- 72 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----------- 72 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------
Confidence 3458999999999999999999999999987 4678888899999999999999999998766531
Q ss_pred HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 354 VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 354 ~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
.|++..
T Consensus 73 ----------------------------------------------~P~~~~---------------------------- 78 (723)
T 4gyw_A 73 ----------------------------------------------SPTFAD---------------------------- 78 (723)
T ss_dssp ----------------------------------------------CTTCHH----------------------------
T ss_pred ----------------------------------------------CCCCHH----------------------------
Confidence 222211
Q ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 434 KERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|..+.+.|+|++|++.|++++++.|.+ +..+.++|.+|..+|++++|+++|++|++++|
T Consensus 79 --------a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 79 --------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 12357999999999999999999999987744 56899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
++...+.+..++...|++++|+++++++....
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999887653
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.36 E-value=8.7e-11 Score=119.28 Aligned_cols=184 Identities=18% Similarity=0.140 Sum_probs=136.0
Q ss_pred HHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTE 269 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~ 269 (733)
...|+++.|+.++++|+.+... ........+.+++++|..+...|+ +++|+.+|++++++..+..+..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~-------- 80 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK---YKEAAHLLNDALAIREKTLGKD-------- 80 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCTT--------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHcCCc--------
Confidence 4679999999999999998653 111224577889999999999999 9999999999999865431111
Q ss_pred hhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 270 LKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 270 ~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
.+....++..+|.+|...|++++|+.+++.+.... .
T Consensus 81 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~------------ 116 (283)
T 3edt_B 81 -HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-------------------------------E------------ 116 (283)
T ss_dssp -CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-------------------------------H------------
T ss_pred -chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------------------------------H------------
Confidence 22345588999999999999999998888775420 0
Q ss_pred HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhc
Q 004720 350 WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVG 429 (733)
Q Consensus 350 ~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g 429 (733)
+. ..++++.
T Consensus 117 -------------------------------------------~~----~~~~~~~------------------------ 125 (283)
T 3edt_B 117 -------------------------------------------KV----LGKFHPD------------------------ 125 (283)
T ss_dssp -------------------------------------------HH----HCTTCHH------------------------
T ss_pred -------------------------------------------HH----cCCCChH------------------------
Confidence 00 0000100
Q ss_pred chhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 430 DAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP--FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 430 ~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~--~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
....+.+.|..++..|+|++|+++|+.++.+.. .+.. .+..+.++.+++.+|...|++++|.++++++
T Consensus 126 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 126 ---------VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD-DPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp ---------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 001233578999999999999999999997631 1111 2577899999999999999999999999999
Q ss_pred Hhh
Q 004720 508 EKL 510 (733)
Q Consensus 508 ~~l 510 (733)
+++
T Consensus 196 l~~ 198 (283)
T 3edt_B 196 LTR 198 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 73
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.36 E-value=4.3e-11 Score=126.48 Aligned_cols=217 Identities=13% Similarity=0.014 Sum_probs=156.8
Q ss_pred HHHccCHHHHHHHHHHHHhhhhc--C--chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 190 AWEVLEQNLAITLLNRAKCLLFG--L--FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 190 a~~~g~~~~A~~~~~rA~~l~~~--~--~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
++..|++++|..++.++....+. + ...+......|...|..+...|+ +++|+.+|.+++++..+.. +
T Consensus 1 ~~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~---~~~A~~~~~~al~~~~~~~-~----- 71 (307)
T 2ifu_A 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQ---LEQAKDAYLQEAEAHANNR-S----- 71 (307)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT-C-----
T ss_pred CCccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcC-C-----
Confidence 35679999999999999987663 1 12345555666677899999999 9999999999999965431 1
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC----cHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA----SLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p----~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
....+.++..++.+|...|+|++|+.+++.+..+.. ...+| ..+...+.++.. |++++|+..+.+.+.
T Consensus 72 -----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~--~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 72 -----LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV--ENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 112456899999999999999999999998877531 11122 233455566666 888888777665432
Q ss_pred ccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHH
Q 004720 342 IKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDE 421 (733)
Q Consensus 342 ~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e 421 (733)
. + . . .+.+
T Consensus 144 ~--------------~------------~----------------------~----~~~~-------------------- 151 (307)
T 2ifu_A 144 V--------------F------------E----------------------N----EERL-------------------- 151 (307)
T ss_dssp H--------------H------------H----------------------H----TTCH--------------------
T ss_pred H--------------H------------H----------------------h----CCCh--------------------
Confidence 0 0 0 0 0000
Q ss_pred HHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHH
Q 004720 422 RVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQ 501 (733)
Q Consensus 422 ~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~ 501 (733)
......+.+.|..+.+.|+|++|+++|+.++.+.+.+.. +...+..+.+++.||+.+|++++|+
T Consensus 152 ---------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 152 ---------------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 000113345899999999999999999999988764432 2466778999999999999999999
Q ss_pred HHHHHHHhhCC
Q 004720 502 EYITEAEKLEP 512 (733)
Q Consensus 502 e~~~~A~~ldp 512 (733)
+++++++ ++|
T Consensus 216 ~~~~~al-~~p 225 (307)
T 2ifu_A 216 KCVRESY-SIP 225 (307)
T ss_dssp HHHHHHT-TST
T ss_pred HHHHHHh-CCC
Confidence 9999999 998
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.32 E-value=2.1e-10 Score=115.33 Aligned_cols=206 Identities=9% Similarity=0.015 Sum_probs=136.3
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
..+|+.|..++..|+ +++|+..|+++++. .|.+. ....++..+|.+|...|+|++|+..++.+
T Consensus 5 ~~~~~~a~~~~~~g~---~~~A~~~~~~~~~~---~p~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 5 NEIYATAQQKLQDGN---WRQAITQLEALDNR---YPFGP-----------YSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTST-----------THHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCh-----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 568999999999999 99999999999997 44221 12347888999999999999999999998
Q ss_pred HccCCCCCCCCCc---HHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhc
Q 004720 302 REGSFDGGDHHAS---LPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLG 378 (733)
Q Consensus 302 ~~~~~~~~~~~p~---~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~ 378 (733)
.+.. +.+|. +++..+.++...|.. ++.. +......+...+.
T Consensus 68 l~~~----P~~~~~~~a~~~~g~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~---------------- 111 (225)
T 2yhc_A 68 IRLN----PTHPNIDYVMYMRGLTNMALDDS--ALQG--------------FFGVDRSDRDPQQ---------------- 111 (225)
T ss_dssp HHHC----TTCTTHHHHHHHHHHHHHHHHC------------------------------CCHH----------------
T ss_pred HHHC----cCCCcHHHHHHHHHHHHHhhhhh--hhhh--------------hhccchhhcCcHH----------------
Confidence 8753 45554 567888887764421 0000 0001111111111
Q ss_pred cCCchHHHHHHHHHHhhcCCCCCcchHHHH--HHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCH
Q 004720 379 RCHVSAKAAVRMAHRVAGDEGDGVSEAAVK--LRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDY 456 (733)
Q Consensus 379 ~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~--~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y 456 (733)
...|+..+++++ +..|+++.... .+...+.. .+....+..|..+++.|+|
T Consensus 112 -----~~~A~~~~~~~l--~~~P~~~~a~~a~~~l~~~~~---------------------~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 112 -----ARAAFSDFSKLV--RGYPNSQYTTDATKRLVFLKD---------------------RLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp -----HHHHHHHHHHHH--TTCTTCTTHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTCH
T ss_pred -----HHHHHHHHHHHH--HHCcCChhHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCcH
Confidence 123333333444 34444433220 11000000 0000123479999999999
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
++|+..|+.++..+|.+ +...+.+.+++.||.++|++++|++.++++....|
T Consensus 164 ~~A~~~~~~~l~~~p~~----~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDT----QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHSTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHCcCC----CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 99999999999999976 34568899999999999999999999999988877
No 75
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.32 E-value=2.5e-11 Score=111.32 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|+.+|+.|+|++|+++|+.++.+.|.+ +.++.++|.||.++|++++|++.|++|++++| ++...+.+..+
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 58999999999999999999999998754 46899999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
+...|++++|++++++..+..+.+++.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999998777764
No 76
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=1.3e-10 Score=129.98 Aligned_cols=353 Identities=11% Similarity=0.027 Sum_probs=181.2
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHhhhhc
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQ---NLAITLLNRAKCLLFG 212 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~---~~A~~~~~rA~~l~~~ 212 (733)
...|...++.|+++.|...|+++++.-. ++ .+...+..+...|+. ++|+..|.++.+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~--------~~--------A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGY--------SE--------AQVGLADIQVGTRDPAQIKQAEATYRAAADT--- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CT--------GGGTCC----------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC--------HH--------HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---
Confidence 3467788888999999999999976421 01 011113344556777 8999999999966
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCC--CHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETN--SLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~--~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
.+. .++++|..+...+.+. .+++|+.||++|.+. +. .. .+..|+.+|...+.
T Consensus 68 ~~~-------A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~---g~--~~--------------A~~~Lg~~y~~~~~ 121 (452)
T 3e4b_A 68 SPR-------AQARLGRLLAAKPGATEAEHHEAESLLKKAFAN---GE--GN--------------TLIPLAMLYLQYPH 121 (452)
T ss_dssp ----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT---TC--SS--------------CHHHHHHHHHHCGG
T ss_pred CHH-------HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC---CC--HH--------------HHHHHHHHHHhCCC
Confidence 333 3777787666665210 189999999999884 22 10 45567777766554
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh-h-ccCCchHHHHhHHHHHHHhc---h-hh
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV-E-IKGIPECIWVSAVEAYFQAA---G-TA 364 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l-~-~~~~~~~~~ls~~~ly~~~~---~-~~ 364 (733)
.+++..+++.+.... ...+|...+..+.++...+.+++++..+.... . ....+. .+..++.+|...+ . +.
T Consensus 122 ~~~~~~a~~~~~~a~---~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~-a~~~Lg~~~~~~g~~~~~~~ 197 (452)
T 3e4b_A 122 SFPNVNAQQQISQWQ---AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI-CYVELATVYQKKQQPEQQAE 197 (452)
T ss_dssp GCTTCCHHHHHHHHH---HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT-HHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHH---HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCcccHHH
Confidence 333333332222211 12356677777777777776665555533222 1 111222 4445666666554 2 44
Q ss_pred hHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHH
Q 004720 365 GAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLW 444 (733)
Q Consensus 365 a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW 444 (733)
|++.+++... ..++.......+..-+....+.+.+ ..++... ...... .......
T Consensus 198 A~~~~~~aa~----~g~~~a~~~~~Lg~~y~~g~~~~~d----~~~A~~~--------~~~aa~---------g~~~a~~ 252 (452)
T 3e4b_A 198 LLKQMEAGVS----RGTVTAQRVDSVARVLGDATLGTPD----EKTAQAL--------LEKIAP---------GYPASWV 252 (452)
T ss_dssp HHHHHHHHHH----TTCSCHHHHHHHHHHHTCGGGSSCC----HHHHHHH--------HHHHGG---------GSTHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCCC----HHHHHHH--------HHHHcC---------CCHHHHH
Confidence 5555554321 1111111101111111100111111 1111110 000000 1111233
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhhCC-ChH
Q 004720 445 NCASI-L--FRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-----LIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 445 ~~g~~-~--~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-----~~~~A~e~~~~A~~ldp-~~~ 515 (733)
+.|.. + ...+++++|++||+++... ..+..+++++.+|. .| ++++|.+.|++|. | ++.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~ 319 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA---------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA 319 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence 46766 3 4689999999999998753 33567899999998 44 9999999999987 7 899
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 004720 516 SAFLKFKIYLQ----KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVA---CQALSVAVAALSNLLN 576 (733)
Q Consensus 516 t~~~~~ki~l~----~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~---~~~~~~a~~aL~~Ll~ 576 (733)
.++.+..+|.. ..|.++|++.+++.....+ ..-...++...... ..+...|..-++.-.+
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99999988887 4599999999998877533 22344454433322 2255555544444433
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.31 E-value=8.9e-11 Score=120.17 Aligned_cols=136 Identities=9% Similarity=-0.005 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++..+...|++++|+..+++++...|..+. ...+++.+|.+++..|+ +++|+.+|++++++ .|.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~---~p~~ 85 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW----AADAQFYLARAYYQNKE---YLLAASEYERFIQI---YQID 85 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT----HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc----hHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHH---CCCC
Confidence 56667788999999999999999999999887642 24579999999999999 99999999999998 4432
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhc--------cCcHHHHHHHHHHHHccCCCCCCCCCcHH----------------
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQ--------KGEYESVIKCVRVLREGSFDGGDHHASLP---------------- 316 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~--------~~~~ekAl~~l~~a~~~~~~~~~~~p~~~---------------- 316 (733)
. ....++..+|.+|.. .|++++|+..++.+... .+.++...
T Consensus 86 ~-----------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~~~~~~~~~~~ 150 (261)
T 3qky_A 86 P-----------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR----YPNHELVDDATQKIRELRAKLARK 150 (261)
T ss_dssp T-----------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH----CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred c-----------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----CcCchhHHHHHHHHHHHHHHHHHH
Confidence 2 123478889999999 99999999999998885 34555555
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 317 -VLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 317 -~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+..+.++...|++++|+..+...+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777777777777777766553
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=2.3e-11 Score=144.03 Aligned_cols=165 Identities=10% Similarity=0.068 Sum_probs=143.5
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+.-....|+.+.+.|++++|+.+|++|+++.+. . ...+...+.++..+|++++|+..|++|+++.|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--------~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P 74 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--------F------AAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345667899999999999999999999987542 1 24566778899999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
..+. +++++|..+...|+ +++|+..|++|+++ +|.+ ..++.+||.+|...|++
T Consensus 75 ~~~~-------a~~nLg~~l~~~g~---~~~A~~~~~kAl~l---~P~~--------------~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 75 TFAD-------AYSNMGNTLKEMQD---VQGALQCYTRAIQI---NPAF--------------ADAHSNLASIHKDSGNI 127 (723)
T ss_dssp TCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCH
T ss_pred CCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCC--------------HHHHHHHHHHHHHcCCH
Confidence 8664 58999999999999 99999999999999 5532 23789999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
++|+.+++.+.++ ++.++.+++..+.++...|++++|++.+.+.+.
T Consensus 128 ~eAi~~~~~Al~l----~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKL----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999987 567888999999999999999999999877653
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.3e-10 Score=110.17 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=134.9
Q ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHh
Q 004720 273 LKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVS 352 (733)
Q Consensus 273 l~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls 352 (733)
.+...+..+|.+|...|++++|+.+++.+.+. .+.++..++..+.++...|++++|+..+...+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 72 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--------- 72 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------
Confidence 34568888999999999999999999888775 34567777888999999999999988877554311
Q ss_pred HHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchh
Q 004720 353 AVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAA 432 (733)
Q Consensus 353 ~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~ 432 (733)
|++..
T Consensus 73 ------------------------------------------------~~~~~--------------------------- 77 (186)
T 3as5_A 73 ------------------------------------------------PDNVK--------------------------- 77 (186)
T ss_dssp ------------------------------------------------TTCHH---------------------------
T ss_pred ------------------------------------------------CCCHH---------------------------
Confidence 11100
Q ss_pred HHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 433 AKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 433 ~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.+.+.|..++..|+|++|+++|+.++...|.+ ..++..++.+|...|++++|.++++++++.+|
T Consensus 78 ---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 78 ---------VATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp ---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 11236777888899999999999998876643 35788899999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
++...+.+..++...|++++|++.++.+....+
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 888888899999999999999999988876643
No 80
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=8.6e-10 Score=123.38 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=74.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccch
Q 004720 186 RSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTRE 265 (733)
Q Consensus 186 rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~ 265 (733)
.|..+...|++++|+..|.++.+. ..+. .++++|..++..|+...+++|+.||++|.+. .+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~-------A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~------- 69 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSE-------AQVGLADIQVGTRDPAQIKQAEATYRAAADT---SP------- 69 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCT-------GGGTCC-------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHH-------HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CH-------
Confidence 377888999999999999999754 4443 3677777777777711139999999999976 21
Q ss_pred hhhhhhhcHHHHHHHHHHHHhccC-----cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHH---HHHHH
Q 004720 266 ETTELKGLKFKTLRFISAIHLQKG-----EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEA---ELELR 337 (733)
Q Consensus 266 ~~~~~~el~~~~l~~La~~yl~~~-----~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deA---i~~l~ 337 (733)
..+..|+.++...+ ++++|+.+++.+.. ..+|.+.+..+.++...+..+++ ...+.
T Consensus 70 ----------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~------~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~ 133 (452)
T 3e4b_A 70 ----------RAQARLGRLLAAKPGATEAEHHEAESLLKKAFA------NGEGNTLIPLAMLYLQYPHSFPNVNAQQQIS 133 (452)
T ss_dssp -----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH------TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHH
T ss_pred ----------HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 14667888665554 78999999998886 34677888888888888765444 33333
Q ss_pred HhhhccCCchHHHHhHHHHHHHhch
Q 004720 338 GMVEIKGIPECIWVSAVEAYFQAAG 362 (733)
Q Consensus 338 ~~l~~~~~~~~~~ls~~~ly~~~~~ 362 (733)
.... .+.+ .....++.+|...+.
T Consensus 134 ~a~~-~g~~-~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 134 QWQA-AGYP-EAGLAQVLLYRTQGT 156 (452)
T ss_dssp HHHH-HTCT-THHHHHHHHHHHHTC
T ss_pred HHHH-CCCH-HHHHHHHHHHHcCCC
Confidence 2221 1222 233455666665543
No 81
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.28 E-value=6.2e-09 Score=127.07 Aligned_cols=347 Identities=13% Similarity=0.044 Sum_probs=200.8
Q ss_pred hhHHHHHHHHHHHHhHHHhhcccccccccCCCCCChhhHHhHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhhHHhcc
Q 004720 66 NSLKLYIWKLSYRLWNSCVDLSNAASISRSSSAFSPYAVANLRHVAADLLSLAADVSGIPSPAIKSASFYFKTGVVWHDL 145 (733)
Q Consensus 66 ~~~~~~l~~~a~~LWN~~v~~~~~~~~~~~~~~~~~~~~a~~R~~a~~ll~~~~~~~~~~~~~~~~~~~~~k~G~~~~~~ 145 (733)
.--|--+.+.-..||+.+..-.| +-+ |++--....++.+..-.|+.+- -+.+.|...
T Consensus 942 ~~arylv~r~d~~lW~~vl~~~n-------------~~R---R~Lidqv~a~aL~e~~~PeeVs-------~~vKaf~~a 998 (1630)
T 1xi4_A 942 SLSRYLVRRKDPELWGSVLLESN-------------PYR---RPLIDQVVQTALSETQDPEEVS-------VTVKAFMTA 998 (1630)
T ss_pred HHHHHHHHhcCHHHHHHHhcCCc-------------HHH---HHHHHHHHHhhcccccCHHHhH-------HHHHHHHhC
Confidence 33455567777889999887744 111 2222223333333333333332 234455588
Q ss_pred CCcchHHHHHHHHHHHHHH----------Hh--hc-cCCChHHHHH----HHH-HHHH-HHHHHHHccCHHHHHHHHHHH
Q 004720 146 KKYDLASGCFEKATEIVSK----------LD--IS-RISDSDERKL----LLD-INIA-RSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 146 g~~~~A~~~lekA~e~~~~----------~~--~~-~~~~~~e~~~----~l~-~l~~-rA~~a~~~g~~~~A~~~~~rA 206 (733)
|++..|+..|||++- .+. +. +. +. +-.+.+ .++ ++.. -|..+...|.+++|..+|+|+
T Consensus 999 glp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka--D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 999 DLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA--DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh--ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 999999999999992 111 00 00 10 000010 001 1111 166777788888888888886
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
... .....+++. ..++ +++|+.+++++ . ...+|..+|.++.
T Consensus 1076 ~~~--------~~A~~VLie------~i~n---ldrAiE~Aerv-------n---------------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1076 DVN--------TSAVQVLIE------HIGN---LDRAYEFAERC-------N---------------EPAVWSQLAKAQL 1116 (1630)
T ss_pred CCH--------HHHHHHHHH------HHhh---HHHHHHHHHhc-------C---------------CHHHHHHHHHHHH
Confidence 311 111122321 2333 44444433322 1 0138889999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCc-hHHHHhHHHHHHHhchhhh
Q 004720 287 QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIP-ECIWVSAVEAYFQAAGTAG 365 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~-~~~~ls~~~ly~~~~~~~a 365 (733)
..|++++|+.+|..+ .+|+.++-.+.++.+.|++++|++.+.+.....+.+ .+. ..+..|.+.++
T Consensus 1117 ~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~r--- 1182 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNR--- 1182 (1630)
T ss_pred hCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcC---
Confidence 999999999998665 468888899999999999999999998765332211 111 12222221111
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHH
Q 004720 366 AETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWN 445 (733)
Q Consensus 366 ~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~ 445 (733)
++ .+..|+ + ++ ...-+++
T Consensus 1183 le----------------------ele~fI--~-~~-------------------------------------n~ad~~~ 1200 (1630)
T 1xi4_A 1183 LA----------------------ELEEFI--N-GP-------------------------------------NNAHIQQ 1200 (1630)
T ss_pred HH----------------------HHHHHH--h-CC-------------------------------------CHHHHHH
Confidence 00 011221 0 11 0112335
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYL 525 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l 525 (733)
.|..+++.|+|++|+.+|..+ .-+.+++.||.++|++++|++.+.+|.. +.+..-.-.+.+
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~q~AIEaarKA~n----~~aWkev~~acv 1261 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKANS----TRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----HHHHHHHHHHHh
Confidence 899999999999999999986 1368899999999999999999998833 344444455555
Q ss_pred hcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 526 QKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
..|++..|..|...+.. +|+.+.-.+......|..+.++..|+.-++
T Consensus 1262 e~~Ef~LA~~cgl~Iiv----~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIVV----HADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred hhhHHHHHHHHHHhhhc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 66666666666543222 455555555555666666666665555543
No 82
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=2.7e-08 Score=112.92 Aligned_cols=372 Identities=11% Similarity=0.005 Sum_probs=219.6
Q ss_pred HHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTEL 270 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~ 270 (733)
...|+++.|...|++++...|..+. +++..|......|+ +++|...|++++.. .| +.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~-------~w~~~~~~~~~~~~---~~~a~~~~~ral~~---~p-~~--------- 79 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGR-------FWKLYIEAEIKAKN---YDKVEKLFQRCLMK---VL-HI--------- 79 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHTTT---CC-CH---------
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHhcCC---HHHHHHHHHHHHhc---CC-Ch---------
Confidence 5689999999999999999998764 46677787888899 99999999999987 33 11
Q ss_pred hhcHHHHHHHHHHH-HhccCcHHHHHH----HHHHHHccCCCCCCCCCcHHHHHHHHHHh---------cCChHHHHHHH
Q 004720 271 KGLKFKTLRFISAI-HLQKGEYESVIK----CVRVLREGSFDGGDHHASLPVLAMKAWLG---------LGRYNEAELEL 336 (733)
Q Consensus 271 ~el~~~~l~~La~~-yl~~~~~ekAl~----~l~~a~~~~~~~~~~~p~~~~lk~~il~~---------~g~~deAi~~l 336 (733)
..|...+.. +-..|++++|.+ .++.+....+ ....++..+...++.... .|++++|...+
T Consensus 80 -----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 80 -----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG-MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp -----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 145545532 223456655544 6666655320 011122333333444433 57889999999
Q ss_pred HHhhhccCCc-hHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHH------hhcCC----CCCcc--
Q 004720 337 RGMVEIKGIP-ECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHR------VAGDE----GDGVS-- 403 (733)
Q Consensus 337 ~~~l~~~~~~-~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~------~l~~~----~sp~~-- 403 (733)
.+.+..+... ..+|.....+....+.. ..+.++.. ..+....+..+... .+. . ..|+.
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~~----~~~~~l~~----~~~~~~~A~~~~~~~~~~~~~l~-~~~~~~~p~~~~ 224 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINIH----LAKKMIED----RSRDYMNARRVAKEYETVMKGLD-RNAPSVPPQNTP 224 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCHH----HHHHHHHT----THHHHHHHHHHHHHHHHHHHHCC-SSSCCCCCC--C
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhchh----HHHHHHHH----hhHHHHHHHHHHHHHHHHHHHhc-cccccCCCCCCh
Confidence 9988754322 33443333322111110 00111100 00011112111111 110 0 12211
Q ss_pred -----hHHHHHHHHHHHHhh---------hHHHHHHHhhcchhHHHhhHHHHHHHH-HHHHHHh-------cCCHH----
Q 004720 404 -----EAAVKLRAKAVAELV---------SDERVLALFVGDAAAKERIAMHAVLWN-CASILFR-------SKDYE---- 457 (733)
Q Consensus 404 -----~~~l~~ka~~l~~l~---------~~e~v~~~~~g~~~~~~~~~~~~llW~-~g~~~~k-------~~~y~---- 457 (733)
...| .+.....+.. ..+++..++. +.. ...+.+.-+|. .|..+.+ .|+++
T Consensus 225 ~~~~~~~~w-~~~~~~e~~~~~~~~~~~~~~~~a~~~y~--~al-~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 225 QEAQQVDMW-KKYIQWEKSNPLRTEDQTLITKRVMFAYE--QCL-LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp CHHHHHHHH-HHHHHHHHHCSSCCSCSHHHHHHHHHHHH--HHH-HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHcCCccCCcchhHHHHHHHHHH--HHH-HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 0111 1111111000 0011212221 011 11222334555 5655554 79987
Q ss_pred ---HHHHHHHHhhc-cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHhcCCHH
Q 004720 458 ---ASAEMFEKSML-YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI-ASAFLKFKIYLQKNDQE 531 (733)
Q Consensus 458 ---~A~~~y~~aL~-~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~-~t~~~~~ki~l~~gd~e 531 (733)
+|++.|+.++. +.|.+ ..++.+++..+.+.|++++|.++|+++++++| ++ ........+..+.|+.+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 99999999997 66643 46889999999999999999999999999999 65 45556677777899999
Q ss_pred HHHHHHHHHHhccCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHH
Q 004720 532 GAINQILAMTICLDFTTDFL-SLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVL 610 (733)
Q Consensus 532 ~Al~~l~~~~~~~~~~~~lL-~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l 610 (733)
+|++.+++.....+..+.+. ..+..+....|+.+.|+..++..++..+.+ + .+...++.+.. ..|+.+++.
T Consensus 374 ~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~---~----~~~~~~~~~~~-~~g~~~~Ar 445 (530)
T 2ooe_A 374 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI---P----EYVLAYIDYLS-HLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC---H----HHHHHHHHHHT-TTTCHHHHH
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC---H----HHHHHHHHHHH-hCCCHhhHH
Confidence 99999999998876555533 333333345899999999999999865433 2 22223333332 247888899
Q ss_pred HHHHHHHHH
Q 004720 611 KYMKRAHAR 619 (733)
Q Consensus 611 ~~~~~A~~~ 619 (733)
..|++|...
T Consensus 446 ~~~~~al~~ 454 (530)
T 2ooe_A 446 VLFERVLTS 454 (530)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998864
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=1.3e-10 Score=136.99 Aligned_cols=196 Identities=10% Similarity=-0.085 Sum_probs=148.6
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHH-----hcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC
Q 004720 232 LSKNETNSLNDALKLMNEALELC-----EKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF 306 (733)
Q Consensus 232 ~~~~~~~~~e~A~~~l~~Alel~-----~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~ 306 (733)
+..++ +++|+..|+++++.. +.++.+ ...+..+|.+|+..|+|++|+..++.+.+.
T Consensus 402 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~p~~--------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-- 462 (681)
T 2pzi_A 402 TVLSQ---PVQTLDSLRAARHGALDADGVDFSES--------------VELPLMEVRALLDLGDVAKATRKLDDLAER-- 462 (681)
T ss_dssp TTTCC---HHHHHHHHHHHHTC-------CCTTC--------------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred ccccC---HHHHHHHHHHhhhhcccccccccccc--------------hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence 67888 999999999998210 012211 127888999999999999999999999886
Q ss_pred CCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHH
Q 004720 307 DGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKA 386 (733)
Q Consensus 307 ~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~ 386 (733)
++.++..++..+.++...|++++|+..+.+.+..
T Consensus 463 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------------------------------------------- 496 (681)
T 2pzi_A 463 --VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-------------------------------------------- 496 (681)
T ss_dssp --HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred --CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------
Confidence 4577888899999999999999999998866532
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004720 387 AVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKS 466 (733)
Q Consensus 387 a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~a 466 (733)
.|++.. .+.+.|..+++.|+|++ +++|+.+
T Consensus 497 -------------~P~~~~------------------------------------~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 497 -------------FPGELA------------------------------------PKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp -------------STTCSH------------------------------------HHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred -------------CCCChH------------------------------------HHHHHHHHHHHcCChHH-HHHHHHH
Confidence 121211 12247888999999999 9999999
Q ss_pred hccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCC-----HHHHHHHHHHH
Q 004720 467 MLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKND-----QEGAINQILAM 540 (733)
Q Consensus 467 L~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd-----~e~Al~~l~~~ 540 (733)
+...|.+ ..+++++|.+|..+|++++|+++|++|++++| +...++.+..+++..++ .+...+++..+
T Consensus 527 l~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 527 WSTNDGV-------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp HHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred HHhCCch-------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 9988754 45789999999999999999999999999999 78888888888877655 23333344444
Q ss_pred HhccCCChH
Q 004720 541 TICLDFTTD 549 (733)
Q Consensus 541 ~~~~~~~~~ 549 (733)
.......++
T Consensus 600 ~~~~~~~~~ 608 (681)
T 2pzi_A 600 EALPPTEPR 608 (681)
T ss_dssp HTSCTTSTT
T ss_pred hhCCCCcHH
Confidence 455444555
No 84
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.20 E-value=2.6e-10 Score=108.13 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccC--------CCCch---hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYL--------PFDVE---NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~--------~~~~~---~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.+.+.|+.+|+.|+|++|+++|+.++.+. |.++. ..+..+.++.++|.||.++|+|++|+++|++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34569999999999999999999999872 33220 01577899999999999999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCh
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTT 548 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~ 548 (733)
+| ++...+.+..++...|++++|+.++++.....+.++
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99 899999999999999999999999999999866555
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=2.1e-10 Score=114.03 Aligned_cols=178 Identities=10% Similarity=0.005 Sum_probs=132.7
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH---Hhhc-cCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK---LDIS-RISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~---~~~~-~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
+...+..|..+++.|+++.|..+|++|++..|. .+.. ..... ......+....+.++...|++++|+..+++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN--SEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch--hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345677899999999999999999999988663 1111 10001 11112333447889999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc
Q 004720 208 CLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 208 ~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~ 287 (733)
.+.|..+. +++++|..+...|+ +++|+.+|++++++ +|.+. .++.++|.+|..
T Consensus 82 ~~~p~~~~-------~~~~lg~~~~~~g~---~~~A~~~~~~al~~---~P~~~--------------~a~~~lg~~~~~ 134 (208)
T 3urz_A 82 QKAPNNVD-------CLEACAEMQVCRGQ---EKDALRMYEKILQL---EADNL--------------AANIFLGNYYYL 134 (208)
T ss_dssp HHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHH
T ss_pred HHCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHc---CCCCH--------------HHHHHHHHHHHH
Confidence 99998764 58889999999999 99999999999999 65332 278899999977
Q ss_pred cCc--HHHHHHHHHHHHccCCCCCCCCC--cHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 288 KGE--YESVIKCVRVLREGSFDGGDHHA--SLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 288 ~~~--~ekAl~~l~~a~~~~~~~~~~~p--~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
.+. .+++...++.+.. ..| ...+..+.++...|++++|+..+.+.+...|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS-------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC---C-------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 764 4456666666543 123 24578888999999999999999999855443
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=5.5e-11 Score=112.18 Aligned_cols=146 Identities=10% Similarity=-0.048 Sum_probs=111.2
Q ss_pred hhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhH
Q 004720 138 TGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHY 217 (733)
Q Consensus 138 ~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~ 217 (733)
.|..+...|+++.|+..|++|+...+... ......|.++...|++++|+.++++++.+.|..+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--------------~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~-- 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS--------------IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK-- 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH--------------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Confidence 46667777788888888888776554211 12234478889999999999999999999988764
Q ss_pred HHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHH
Q 004720 218 KSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKC 297 (733)
Q Consensus 218 ~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~ 297 (733)
+++++|.++...|+ +++|+.+|++++++ +|.+. .++..+|.+|...|++++|.++
T Consensus 67 -----a~~~lg~~~~~~~~---~~~A~~~~~~al~~---~p~~~--------------~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 67 -----AHRFLGLLYELEEN---TDKAVECYRRSVEL---NPTQK--------------DLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp -----HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCH--------------HHHHHHHHHHHHHCSSSSHHHH
T ss_pred -----HHHHHHHHHHHcCc---hHHHHHHHHHHHHh---CCCCH--------------HHHHHHHHHHHHcCChHHHHHH
Confidence 58888999999999 99999999999998 55332 2788899999999988776654
Q ss_pred -HHHHHccCCCCCCCCCcHHHHHHHHHHhcCC
Q 004720 298 -VRVLREGSFDGGDHHASLPVLAMKAWLGLGR 328 (733)
Q Consensus 298 -l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~ 328 (733)
++.+.++ .+.+|.++.++.+++...|+
T Consensus 122 ~~~~al~l----~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 122 WVERAAKL----FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHH----STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHh----CcCCHHHHHHHHHHHHHhCc
Confidence 6888876 46788888889888887775
No 87
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=1.3e-09 Score=114.02 Aligned_cols=190 Identities=12% Similarity=-0.006 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+..++..+...|++++|+..+.++++..+..+. .......++.+|..+...|+ +++|+.+|++|+++..+.. +
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~~~-~ 150 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQLTGI-D 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHTTCCCSS-C
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhcCC-c
Confidence 34455677888999999999999999988765443 33455667789999999999 9999999999998743321 0
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
....+.++..+|.+|...|+|++|+.+++.+.++. ...
T Consensus 151 ----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~----~~~---------------------------- 188 (293)
T 2qfc_A 151 ----------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL----EAL---------------------------- 188 (293)
T ss_dssp ----------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHS----------------------------
T ss_pred ----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----Hhc----------------------------
Confidence 11245589999999999999999999988876421 000
Q ss_pred hccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhH
Q 004720 341 EIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSD 420 (733)
Q Consensus 341 ~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~ 420 (733)
|+++.
T Consensus 189 ------------------------------------------------------------~~~~~--------------- 193 (293)
T 2qfc_A 189 ------------------------------------------------------------HDNEE--------------- 193 (293)
T ss_dssp ------------------------------------------------------------CCCHH---------------
T ss_pred ------------------------------------------------------------Ccccc---------------
Confidence 00000
Q ss_pred HHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHH
Q 004720 421 ERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRA 500 (733)
Q Consensus 421 e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A 500 (733)
....+++|.|..+++.|+|++|+++|++++.+.+.... ....+.++.++|.||.++|++++|
T Consensus 194 -----------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 194 -----------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp -----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred -----------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHcCCcHHH
Confidence 00013456899999999999999999999987542211 245689999999999999999999
Q ss_pred -HHHHHHHHhh
Q 004720 501 -QEYITEAEKL 510 (733)
Q Consensus 501 -~e~~~~A~~l 510 (733)
.+++++|+.+
T Consensus 256 i~~~~~~Al~~ 266 (293)
T 2qfc_A 256 IEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8889999876
No 88
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.15 E-value=2.9e-10 Score=104.06 Aligned_cols=100 Identities=10% Similarity=0.154 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch-------HH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI-------AS 516 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~-------~t 516 (733)
+.|+.+|+.|+|++|+++|+.++++.|.+ +.++.++|.||..+|++++|++++++|++++| +. .+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 58999999999999999999999998754 46899999999999999999999999999988 43 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 517 AFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 517 ~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
.+.+..++...|++++|++++++.....+ +|+.+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 56688889999999999999999887654 577543
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=4.8e-10 Score=112.64 Aligned_cols=188 Identities=10% Similarity=-0.020 Sum_probs=137.9
Q ss_pred HHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 133 SFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 133 ~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
......|..++..|+|+.|+..|+++++..|. ++. ..+.+...+.++...|++++|+..++++....|.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPF------GPY-----SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------STT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 44567899999999999999999999986442 011 0245666788999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHhHHHHh------------------cCCCCCHHHHHHHHHHHHHHHhcCCCCcccchh---hhhhh
Q 004720 213 LFEHYKSLANQYLTFAKSALS------------------KNETNSLNDALKLMNEALELCEKGLGEARTREE---TTELK 271 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~------------------~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~---~~~~~ 271 (733)
.+. ...+++.+|.++.. .|+ +++|+..|+++++. .|.+...... .....
T Consensus 74 ~~~----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 74 HPN----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQ---ARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp CTT----HHHHHHHHHHHHHHHHC--------------CCHH---HHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHH
T ss_pred CCc----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHH---HHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHH
Confidence 764 22346666666654 567 99999999999887 4433321110 00111
Q ss_pred hcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 004720 272 GLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMVEIKGI 345 (733)
Q Consensus 272 el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~ 345 (733)
.........+|.+|...|+|++|+..++.+.+.. +.+| .+.+..+.++.+.|++++|+..+..+..+.+.
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 1122334578999999999999999999988853 3444 45799999999999999999999877755543
No 90
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.15 E-value=2e-09 Score=112.48 Aligned_cols=188 Identities=12% Similarity=-0.027 Sum_probs=140.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
+...+..+...|++++|+..+++++...+..+.. ......++.+|..+...++ +++|+.+|++|+++.... ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---~~~Ai~~~~~al~~~~~~---~~ 150 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-QQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQLTG---ID 150 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH-HHHHHHHHHHHHHHTTSSC---HHHHHHHHHHHHHTCCCC---SC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH-HHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHhccc---cc
Confidence 3344667889999999999999999876655543 3345556678999998899 999999999999963221 11
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEI 342 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~ 342 (733)
......++.++|.+|...|+|++|+.+++.+.+.. . .
T Consensus 151 --------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------------------------~---~- 187 (293)
T 3u3w_A 151 --------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL-------------------------------E---A- 187 (293)
T ss_dssp --------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------H---H-
T ss_pred --------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------H---h-
Confidence 11234589999999999999999999988876421 0 0
Q ss_pred cCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHH
Q 004720 343 KGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDER 422 (733)
Q Consensus 343 ~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~ 422 (733)
. .. +.
T Consensus 188 ---------------------------------------------------~---~~---~~------------------ 192 (293)
T 3u3w_A 188 ---------------------------------------------------L---HD---NE------------------ 192 (293)
T ss_dssp ---------------------------------------------------S---SC---CH------------------
T ss_pred ---------------------------------------------------c---cc---ch------------------
Confidence 0 00 00
Q ss_pred HHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHH
Q 004720 423 VLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQ 501 (733)
Q Consensus 423 v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~ 501 (733)
.....++.|.|..+++.|+|++|+++|+.++.+.+.... ....+.++.++|.||.++| .+++|+
T Consensus 193 --------------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~~A~ 257 (293)
T 3u3w_A 193 --------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MALIGQLYYQRGECLRKLEYEEAEIE 257 (293)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred --------------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 000123457899999999999999999999987653322 2467899999999999999 579999
Q ss_pred HHHHHHHhh
Q 004720 502 EYITEAEKL 510 (733)
Q Consensus 502 e~~~~A~~l 510 (733)
+++++|+.+
T Consensus 258 ~~~~~Al~i 266 (293)
T 3u3w_A 258 DAYKKASFF 266 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 91
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.15 E-value=1.6e-09 Score=114.24 Aligned_cols=189 Identities=12% Similarity=0.038 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRA 206 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA 206 (733)
+....+..+.+.|+.+...|+++.|..+|++|+++.+... . .......+...+.++..+|++++|+.++++|
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR-----S---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----C---HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----C---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3455667778889999999999999999999999875421 1 1112345666688888999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
+.+.+.... ....+..+.++|..+.. |+ +++|+.+|++|+++.+... + ......++.++|.+|.
T Consensus 103 l~l~~~~g~-~~~~a~~~~~lg~~~~~-g~---~~~A~~~~~~Al~~~~~~~-~----------~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 103 SVMYVENGT-PDTAAMALDRAGKLMEP-LD---LSKAVHLYQQAAAVFENEE-R----------LRQAAELIGKASRLLV 166 (307)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHTT-TC---HHHHHHHHHHHHHHHHHTT-C----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHHHc-CC---HHHHHHHHHHHHHHHHhCC-C----------hhHHHHHHHHHHHHHH
Confidence 999765332 23567889999999988 99 9999999999999965421 0 1234568999999999
Q ss_pred ccCcHHHHHHHHHHHHccCCCCCCCCC---cHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 287 QKGEYESVIKCVRVLREGSFDGGDHHA---SLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 287 ~~~~~ekAl~~l~~a~~~~~~~~~~~p---~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
..|+|++|+.+++.+..+.+. ....+ ..++..+.+++..|++++|+..+.+.+
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKE-MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999988875310 01111 133566678888899999999998877
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.15 E-value=8.1e-10 Score=109.76 Aligned_cols=120 Identities=11% Similarity=0.118 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHH---------HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHH
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKS---------LANQYLTFAKSALSKNETNSLNDALKLMNEAL 251 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~---------La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Al 251 (733)
+.+..++..++..|++++|+.++++++.+.|..+..... ...+.+++|..+...|+ +++|+.+|++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN---YDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 456778889999999999999999999999875542110 01111226666666666 666666666666
Q ss_pred HHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHH
Q 004720 252 ELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWL 324 (733)
Q Consensus 252 el~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~ 324 (733)
++ +|.+. .++..+|.+|...|++++|+.+++.+.+. ++.++.+++..+.++.
T Consensus 82 ~~---~p~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 82 QK---APNNV--------------DCLEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGNYYY 133 (208)
T ss_dssp HH---CTTCH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred HH---CCCCH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHH
Confidence 66 33221 25556666666666666666666666554 2344444444444443
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=3.5e-10 Score=106.63 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
++.|..+++.|+|++|+++|+.++.+.|.+ +.++.++|.||..+|++++|+++|+++++++| ++...+.+..
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQERD-------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 458999999999999999999999998754 46799999999999999999999999999999 8999999999
Q ss_pred HHHhcCCHHHHHHH-HHHHHhccCCChHHHHHHHHHHHHcC
Q 004720 523 IYLQKNDQEGAINQ-ILAMTICLDFTTDFLSLAAHEAVACQ 562 (733)
Q Consensus 523 i~l~~gd~e~Al~~-l~~~~~~~~~~~~lL~la~~~a~~~~ 562 (733)
++...|++++|++. +++..+..+.+|.+..+-.++....|
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 99999999888876 58888888888988777766665554
No 94
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.13 E-value=8.1e-10 Score=99.75 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+++.|+|++|+++|+.++...|.+ ..++.++|.||.++|++++|+++++++++++| ++...+.+.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4468999999999999999999999988754 46899999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcc
Q 004720 522 KIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.++...|++++|++++++.....
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999886
No 95
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.13 E-value=2.2e-10 Score=109.32 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-------CchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---
Q 004720 441 AVLWNCASILFRSKDYEASAEMFEKSMLYLPF-------DVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--- 510 (733)
Q Consensus 441 ~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~-------~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--- 510 (733)
..+.+.|+.+++.|+|++|+++|++++.+.|. +.. +..+.++.|++.|+.++|+|++|++.|++|+++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~--~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHA--GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34557999999999999999999999999987 321 356679999999999999999999999999999
Q ss_pred ----CC-ChHHH----HHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 511 ----EP-NIASA----FLKFKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 511 ----dp-~~~t~----~~~~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
+| +.... |.+..++...|++++|+++|++...+.+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99 78888 9999999999999999999999998864
No 96
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=1.1e-08 Score=107.79 Aligned_cols=219 Identities=7% Similarity=-0.067 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh-------cCCh-------HHHHHHHHHhhh-ccCCchHHHHhHHHH
Q 004720 292 ESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG-------LGRY-------NEAELELRGMVE-IKGIPECIWVSAVEA 356 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~-------~g~~-------deAi~~l~~~l~-~~~~~~~~~ls~~~l 356 (733)
++|+..++.+... .+.+|..++..+..+.. .|++ ++|+..+.+.+. ..|....+|...+.+
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 6788888888876 36788888888888763 5886 899999999987 467777788888887
Q ss_pred HHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHHHHhhhHHHHHHHhhcchhHH
Q 004720 357 YFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEA-AVKLRAKAVAELVSDERVLALFVGDAAAK 434 (733)
Q Consensus 357 y~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~-~l~~ka~~l~~l~~~e~v~~~~~g~~~~~ 434 (733)
+...+. +.|...+ ++.+ +..|++.. .|
T Consensus 109 ~~~~~~~~~A~~~~----------------------~~al--~~~p~~~~~~~--------------------------- 137 (308)
T 2ond_A 109 EESRMKYEKVHSIY----------------------NRLL--AIEDIDPTLVY--------------------------- 137 (308)
T ss_dssp HHHTTCHHHHHHHH----------------------HHHH--TSSSSCTHHHH---------------------------
T ss_pred HHhcCCHHHHHHHH----------------------HHHH--hccccCccHHH---------------------------
Confidence 765554 3333333 3444 34554422 11
Q ss_pred HhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhCC-
Q 004720 435 ERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCY-LGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 435 ~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cy-l~l~~~~~A~e~~~~A~~ldp- 512 (733)
-+.|..+...|++++|...|+.++...|.. ..++...+... ...|++++|.++|+++++.+|
T Consensus 138 ---------~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~ 201 (308)
T 2ond_A 138 ---------IQYMKFARRAEGIKSGRMIFKKAREDARTR-------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 201 (308)
T ss_dssp ---------HHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 126777788999999999999999987744 24455555443 347999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICL--D--FTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~--~--~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
++........++...|+.++|+..+++..... + ..+++...-+....+.|+.+.+...+...++..+.+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 88888888899999999999999999999853 2 345566666677788999999999999999866654
No 97
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.10 E-value=1.1e-08 Score=96.64 Aligned_cols=165 Identities=15% Similarity=0.135 Sum_probs=135.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+++|+.++...|.+ ..++..++.+|...|++++|.++++++++.+| ++...+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4458999999999999999999999887644 46789999999999999999999999999999 888888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQ 601 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~ 601 (733)
.++...|++++|++.++.+....+.++..+..-+......|+.+.|+..++..++....+ + .++..+.. +..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~----~~~~~la~-~~~ 155 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---G----KVHRAIAF-SYE 155 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---H----HHHHHHHH-HHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---h----HHHHHHHH-HHH
Confidence 999999999999999999998877778776666777888999999999999988843222 2 22222322 233
Q ss_pred hcCChhHHHHHHHHHHHHhhh
Q 004720 602 ETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 602 ~~~~~~~~l~~~~~A~~~l~~ 622 (733)
..|+.++.+.+++++...-++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 156 QMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHcCCC
Confidence 457888999999999876554
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.10 E-value=9.4e-10 Score=129.59 Aligned_cols=197 Identities=14% Similarity=0.060 Sum_probs=141.3
Q ss_pred CCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh--------hccCCchHHHHhHHHHHHHhch-hhhHHHHHHHHHhhhcc
Q 004720 309 GDHHASLPVLAMKAWLGLGRYNEAELELRGMV--------EIKGIPECIWVSAVEAYFQAAG-TAGAETAKGVFLGLLGR 379 (733)
Q Consensus 309 ~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l--------~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~l~~ll~~ 379 (733)
.+.+|...++.+ ...|++++|+..+...+ ...+.....+...+..|...++ +.|...++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~--------- 457 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLD--------- 457 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHH---------
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHH---------
Confidence 456777766655 77889999999988877 5445555556666666655544 44444443
Q ss_pred CCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHH
Q 004720 380 CHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEAS 459 (733)
Q Consensus 380 ~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A 459 (733)
+.+ +..|++. ..+|+.|..+++.|+|++|
T Consensus 458 -------------~al--~~~p~~~------------------------------------~a~~~lg~~~~~~g~~~~A 486 (681)
T 2pzi_A 458 -------------DLA--ERVGWRW------------------------------------RLVWYRAVAELLTGDYDSA 486 (681)
T ss_dssp -------------HHH--HHHCCCH------------------------------------HHHHHHHHHHHHHTCHHHH
T ss_pred -------------HHh--ccCcchH------------------------------------HHHHHHHHHHHHcCCHHHH
Confidence 332 2233331 2455689999999999999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
++.|+.++.+.|.+ ...+.++|.||.++|++++ +++|++|++++| ++..++.+..++...|++++|+++|+
T Consensus 487 ~~~~~~al~l~P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 487 TKHFTEVLDTFPGE-------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHSTTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998855 3578999999999999999 999999999999 89999999999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHh
Q 004720 539 AMTICLDFTTDFLSLAAHEAVACQA-----LSVAVAALSNLLN 576 (733)
Q Consensus 539 ~~~~~~~~~~~lL~la~~~a~~~~~-----~~~a~~aL~~Ll~ 576 (733)
++....+.+++.....+......+. ......|+..+-.
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred hhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 8888766555533332222222222 3445556655555
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=7.4e-10 Score=105.19 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+++.|+|++|+.+|+.++.+.|.+ +..+.++|.||..+|+|++|++.|++|++++| ++...+.+.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 4468999999999999999999999998855 45789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
.++...|++++|++++++.....+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998664
No 100
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.08 E-value=3.4e-09 Score=110.73 Aligned_cols=186 Identities=11% Similarity=-0.027 Sum_probs=138.3
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......+..++..|+|+.|...|.++++..+. ..+....+..+...+..+...|++++|+.++.++..+.+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345567888999999999999999988875321 111112234444567778899999999999999998876
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
..... ...+.+++++|..+...|+ +++|+.+|++|+++.+..+.+ ......++.++|.+|...|+|
T Consensus 147 ~~~~~-~~~~~~~~~lg~~y~~~~~---~~~A~~~~~kal~~~~~~~~~----------~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 147 TGIDV-YQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEALHDN----------EEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp CSSCT-THHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCch-HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCcc----------ccchHHHHHhHHHHHHHHhhH
Confidence 53322 2257789999999999999 999999999999987665422 112235899999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCC---CcHHHHHHHHHHhcCChHHH-HHHHHHhh
Q 004720 292 ESVIKCVRVLREGSFDGGDHH---ASLPVLAMKAWLGLGRYNEA-ELELRGMV 340 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~---p~~~~lk~~il~~~g~~deA-i~~l~~~l 340 (733)
++|+.+++.+..+... .+.. +..++..+.++...|++++| ...+...+
T Consensus 213 ~~Al~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 213 EESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999988764310 1111 34558889999999999999 55566544
No 101
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.06 E-value=5.2e-08 Score=119.07 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCC------Ch
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--SLIDRAQEYITEAEKLEP------NI 514 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--~~~~~A~e~~~~A~~ldp------~~ 514 (733)
++..+..+.+.|.|++|+..|+.+|...+... -++..++.+|.+- +++.++.++|.....+.| +.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~-------gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHM-------GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHh-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 44556666777777777777777776654332 2455555555543 456666666665555544 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLD--FTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~--~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+..--.-.+|.+-|+++.|+. +|..-.+ ++.+...- ...+-.|.+..-+++...++
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~---tm~~h~~~a~~~~~Fk~---~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKD---IITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHH---HHHhccHhhhhhHHHHH---HhcccccHHHHHHHHHHHHh
Confidence 223345566677777777775 3344321 33332222 22345677777777776665
No 102
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.05 E-value=1.3e-09 Score=99.61 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=95.8
Q ss_pred HHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 004720 130 KSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCL 209 (733)
Q Consensus 130 ~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l 209 (733)
..+......|+.+++.|+|+.|+.+|++|+++.|. . ..++..++.++..+|++++|+.++++++.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~--------~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS--------N------ITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455668999999999999999999999987542 1 356778899999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 210 LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 210 ~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
.|..+..+..++.+|+++|..+...|+ +++|+.+|++++.+
T Consensus 72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~---~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 72 GRETRADYKLIAKAMSRAGNAFQKQND---LSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhh
Confidence 999887788899999999999999999 99999999999987
No 103
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.04 E-value=3.3e-09 Score=113.85 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch--------hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE--------NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--------~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|..+++.|+|++|++.|+.++.+.|.+.. ..+..+.++.++|.||.++|++++|+++|++|++++|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3446999999999999999999999999886520 1134578999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAV-AALSNLLNF 577 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~-~aL~~Ll~~ 577 (733)
++...+.+..++...|++++|+.+++++....+.+++....-+......++...+. ..++.+++.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998877776555555555666666663 344555553
No 104
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.04 E-value=2.7e-09 Score=101.24 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.+++.|..+++.|+|++|+++|+.++.+.|.+ ..++.+++.||..+|++++|+++|+++++++| ++...+.+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35569999999999999999999999988754 46899999999999999999999999999999 89999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
..++...|++++|++++++.....+.+++
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999988876665
No 105
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.2e-08 Score=109.40 Aligned_cols=235 Identities=10% Similarity=0.008 Sum_probs=171.7
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHh---hccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLD---ISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~---~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~ 212 (733)
+..|+..++.|+|+.|...|.++++..+... ..+.............+...+.++..+|++++|+.++.++..+.+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4457778888999999999999987654211 1111111222223345667789999999999999999999998877
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHH
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYE 292 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~e 292 (733)
.++. .....++.++|..+...|+ +++|+..+++++++..+... ...+++++..||.+|...|+|+
T Consensus 88 ~~~~-~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 88 FAKS-KTVKVLKTLIEKFEQVPDS---LDDQIFVCEKSIEFAKREKR-----------VFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp SCHH-HHHHHHHHHHHHHCSCCSC---HHHHHHHHHHHHHHHHHSSC-----------CSSHHHHHHHHHHHHHHHTCHH
T ss_pred ccch-HHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhCc-----------cHHHHHHHHHHHHHHHHccChH
Confidence 6542 3345667778988888888 99999999999998665421 2346789999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHH
Q 004720 293 SVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGV 372 (733)
Q Consensus 293 kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~ 372 (733)
+|+.+++.+..+. ...+
T Consensus 153 ~A~~~l~~~~~~~---~~~~------------------------------------------------------------ 169 (434)
T 4b4t_Q 153 DSLALINDLLREF---KKLD------------------------------------------------------------ 169 (434)
T ss_dssp HHHHHHHHHHHHH---TTSS------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---Hhcc------------------------------------------------------------
Confidence 9998887775521 0000
Q ss_pred HHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh
Q 004720 373 FLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR 452 (733)
Q Consensus 373 l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k 452 (733)
..+ .+ ..++.+.|..+..
T Consensus 170 --------------------------~~~-------~~-----------------------------~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 170 --------------------------DKP-------SL-----------------------------VDVHLLESKVYHK 187 (434)
T ss_dssp --------------------------CST-------HH-----------------------------HHHHHHHHHHHHH
T ss_pred --------------------------cch-------hH-----------------------------HHHHHHHHHHHHH
Confidence 000 00 0012247888999
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.|+|++|..+|+.++.+.+.....+...+.++..++..|...++|++|..++.++++.
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999997654332223467899999999999999999999999998765
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.02 E-value=5.6e-09 Score=109.05 Aligned_cols=186 Identities=11% Similarity=-0.022 Sum_probs=139.5
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
.....+.+..++..|+|+.|...|+++.+..+ . ..+....+.++...+..+...|+++.|+.++.+++.+.+
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~------~--~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE------Y--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC------C--CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc------C--ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 34445567888999999999999998876321 1 111112233444457777889999999999999999766
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcH
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEY 291 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ 291 (733)
..++. ...+.++.++|..+...|+ +++|+.+|++|+++.++.+.+ ......++.++|.+|...|+|
T Consensus 147 ~~~~~-~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 147 TGIDV-YQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEALHDN----------EEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp CCSCT-THHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSSCC----------HHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccH-HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcccc----------hhHHHHHHHHHHHHHHHHhHH
Confidence 54432 2456789999999999999 999999999999987764321 334567999999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCC---CcHHHHHHHHHHhcCC-hHHHHHHHHHhh
Q 004720 292 ESVIKCVRVLREGSFDGGDHH---ASLPVLAMKAWLGLGR-YNEAELELRGMV 340 (733)
Q Consensus 292 ekAl~~l~~a~~~~~~~~~~~---p~~~~lk~~il~~~g~-~deAi~~l~~~l 340 (733)
++|+.+++.+.++... .+.. +..++..+.++...|+ +++|+..+...+
T Consensus 213 ~~A~~~~~~al~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 213 EESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHH-TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999888774320 1111 3456889999999995 699999988665
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.02 E-value=3.3e-09 Score=99.78 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+..|+.++...|.+ ...+.++|.||..+|++++|+++|+++++++| ++...+.+.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4458999999999999999999999988755 45789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
.++...|++++|++++++.....+.+|+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999988777764
No 108
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.01 E-value=1.9e-08 Score=92.41 Aligned_cols=154 Identities=9% Similarity=-0.042 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 004720 128 AIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAK 207 (733)
Q Consensus 128 ~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~ 207 (733)
....+......|..+...|+++.|..+|++|++..+... +.......+...+.++...|++++|+.+++++.
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--------DKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677888999999999999999999999999876421 111123456677899999999999999999999
Q ss_pred hhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc
Q 004720 208 CLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 208 ~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~ 287 (733)
.+.+..+. ....+.+++++|..+...|+ +++|..++++++++.+.... ......++..++.+|..
T Consensus 77 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 77 LLARQLKD-RAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQELKD-----------RIGEGRACWSLGNAYTA 141 (164)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHccc-----------hHhHHHHHHHHHHHHHH
Confidence 99876432 34567889999999999999 99999999999999665321 22345688999999999
Q ss_pred cCcHHHHHHHHHHHHcc
Q 004720 288 KGEYESVIKCVRVLREG 304 (733)
Q Consensus 288 ~~~~ekAl~~l~~a~~~ 304 (733)
.|++++|+.+++.+.++
T Consensus 142 ~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999888764
No 109
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.00 E-value=4.9e-09 Score=102.64 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhh---------hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENR---------ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~---------~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.+.+.|..+++.|+|++|+++|+.++.+.|.+.... .....++.++|.||..+|++++|+++++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 345699999999999999999999999887654100 01247899999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
++...+.+..++...|++++|++++++.....+.+++.......
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 89999999999999999999999999999988777765544433
No 110
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.99 E-value=1.2e-08 Score=91.63 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAF 518 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~ 518 (733)
+++.|..+++.|+|++|++.|+.++...|.+. .....+..+|.||...|++++|++.++++++.+| + +...+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 34689999999999999999999999888653 4567899999999999999999999999999999 7 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
.+..++...|++++|+..++.+....+.++.
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999999999988766555
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.99 E-value=5.6e-09 Score=96.82 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+++.|..+++.|+|++|+.+|+.++...|.+ ...+.++|.||..+|++++|++.|+++++++| ++...+.+.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYD-------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4468999999999999999999999987754 45789999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
.++...|++++|+++++......+.+|+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 99999999999999999999887766664
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=1.4e-08 Score=94.79 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+++.|..++..|+|++|+++|+.++...|.+ ..++.++|.||..+|++++|+++++++++++| ++...+.+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4468999999999999999999999987744 46789999999999999999999999999999 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSL--AAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l--a~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.++...|++++|+++++++....+.+++.... .+....+.|+.+.|+..+....+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999987777764321 22334455677777766655443
No 113
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.96 E-value=1.6e-08 Score=89.77 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.++..|..++..|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|+++++++++.+| ++...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 44568999999999999999999999887644 46789999999999999999999999999999 88899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVA 560 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~ 560 (733)
..++...|++++|++.++......+.++.....-+.....
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 9999999999999999999998877667654444343333
No 114
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.3e-08 Score=93.17 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+...|..+++.|+|++|+++|+.++...|.+ .....++.+++.||...|++++|+++++++++++| ++...+.+.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3458999999999999999999999988754 24578999999999999999999999999999999 888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.++...|++++|++++++.....+.++++...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 99999999999999999999987777775544
No 115
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.94 E-value=9.1e-09 Score=115.27 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCch--------hhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVE--------NRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP- 512 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~--------~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp- 512 (733)
.+.+.|+.+++.|+|++|+..|+.++.+.|.+.. ..+..+.++.|+|.||.++|+|++|+++|++|++++|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 3446999999999999999999999998886520 0134578999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHh
Q 004720 513 NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAA-LSNLLN 576 (733)
Q Consensus 513 ~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~a-L~~Ll~ 576 (733)
++..++.+..++...|++++|+.+++++....+.+++....-.......++...+.+. +..+++
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998776666555444444455555555433 344444
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=3.7e-08 Score=87.47 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
..|..++..|+|++|+++|+.++...|.+ ...+..++.+|...|++++|.+.++++.+.+| ++...+.+..+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 47899999999999999999999876643 35788999999999999999999999999999 78888889999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
+...|++++|++.++.+....+.++..+...+......|+.+.|...++..++.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999999887777776666667778899999999888887763
No 117
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.94 E-value=1.2e-08 Score=91.30 Aligned_cols=103 Identities=19% Similarity=0.144 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|+++++++++++| ++...+.+.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3458999999999999999999999987644 46799999999999999999999999999999 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
.++...|++++|+++++......+.+++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 122 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999999887655555433
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=2.3e-08 Score=98.04 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.+|+.|..++..|+|++|++.|+.++. | .+.+++++|.+|..+|++++|+++++++++++| ++...+.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~--~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 77 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD--P--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS--C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC--C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 357899999999999999999999852 1 246899999999999999999999999999999 88999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTT----------------DFLSLAAHEAVACQALSVAVAALSNLLNF 577 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~----------------~lL~la~~~a~~~~~~~~a~~aL~~Ll~~ 577 (733)
..++...|++++|++++++.....+.++ ..+..-+......|+.+.|+..++..++.
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999999998765544 55555567777899999999999998884
No 119
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.91 E-value=6.4e-09 Score=94.28 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
.+.|..+++.|+|++|+..|+.++...|.+ +..++++|.+|..+|++++|++.+++|++++| ++...+.+..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPER-------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 358999999999999999999999988754 46789999999999999999999999999999 8999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC
Q 004720 523 IYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
++...|++++|+..++++....+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999999999877543
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=1.1e-08 Score=98.39 Aligned_cols=163 Identities=14% Similarity=0.061 Sum_probs=122.9
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
....|..++..|+++.|...|++|++..|. . ...+...+.++...|++++|+..++++....| .+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--------R------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--------S------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------c------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence 456788889999999999999999987763 1 24555668888999999999999999998888 65
Q ss_pred hhHHHHHHHHHHHhHH-HHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 215 EHYKSLANQYLTFAKS-ALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~-~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
..... .|.. +...++ ..+|+..|++++++ +|.+. .++..+|.+|...|++++
T Consensus 74 ~~~~~-------~~~~~~~~~~~---~~~a~~~~~~al~~---~P~~~--------------~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 74 SYKSL-------IAKLELHQQAA---ESPELKRLEQELAA---NPDNF--------------ELACELAVQYNQVGRDEE 126 (176)
T ss_dssp HHHHH-------HHHHHHHHHHT---SCHHHHHHHHHHHH---STTCH--------------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-------HHHHHHHhhcc---cchHHHHHHHHHHh---CCCCH--------------HHHHHHHHHHHHcccHHH
Confidence 43221 1211 112233 35578999999998 55332 278889999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
|+.+++.+.+..+ ...++...+..+.++...|+.++|+..+++.+.
T Consensus 127 A~~~~~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 127 ALELLWNILKVNL--GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHTTCT--TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999998887531 122355778889999999999999999987663
No 121
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=3.3e-08 Score=86.14 Aligned_cols=104 Identities=11% Similarity=-0.052 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
++..|..++..|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|.++++++++++| ++...+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4568999999999999999999999987754 45789999999999999999999999999999 888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.++...|++++|++.++......+.+++....
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999887777764443
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=1.2e-08 Score=116.98 Aligned_cols=155 Identities=8% Similarity=-0.022 Sum_probs=115.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHH
Q 004720 145 LKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQY 224 (733)
Q Consensus 145 ~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~ 224 (733)
.|+++.|..+|++|++..+. . ...+...+.++..+|++++|+..++++.++.|..+. .+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~ 60 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--------D------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE-------AV 60 (568)
T ss_dssp -------------------C--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH-------HH
T ss_pred CccHHHHHHHHHHHHHhCCC--------C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Confidence 47899999999999886542 1 245666788999999999999999999999987653 58
Q ss_pred HHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 225 LTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 225 ~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
+++|..+...|+ +++|+.+|++++++ ++.+ ..++..+|.+|...|++++|+.+++.+.+.
T Consensus 61 ~~lg~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 61 ARLGRVRWTQQR---HAEAAVLLQQASDA---APEH--------------PGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHhc---CCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999 99999999999998 5422 237889999999999999999999999886
Q ss_pred CCCCCCCCCcHHHHHHHHHHhc---CChHHHHHHHHHhhhccC
Q 004720 305 SFDGGDHHASLPVLAMKAWLGL---GRYNEAELELRGMVEIKG 344 (733)
Q Consensus 305 ~~~~~~~~p~~~~lk~~il~~~---g~~deAi~~l~~~l~~~~ 344 (733)
.+.++..++..+.++... |++++|+..+.+.+...+
T Consensus 121 ----~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 121 ----LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred ----CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 456778889999999999 999999999999884433
No 123
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.90 E-value=1.5e-08 Score=92.07 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
.+++.|..+++.|+|++|+.+|+.++...|.+ ..++.++|.||..+|++++|+++++++++++| ++...+.+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45569999999999999999999999987754 46899999999999999999999999999999 89999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccC
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
..++...|++++|++.++.+....+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 9999999999999999999887754
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=2.2e-09 Score=101.92 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHH
Q 004720 199 AITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTL 278 (733)
Q Consensus 199 A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l 278 (733)
+...+.+++.+.|..+ ..++++|..++..|+ +++|+.+|++++++ +|.+. ..|
T Consensus 21 ~~~~l~~al~l~p~~~-------~~~~~lg~~~~~~g~---~~eA~~~~~~al~~---~P~~~--------------~~~ 73 (151)
T 3gyz_A 21 SGATLKDINAIPDDMM-------DDIYSYAYDFYNKGR---IEEAEVFFRFLCIY---DFYNV--------------DYI 73 (151)
T ss_dssp TSCCTGGGCCSCHHHH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCH--------------HHH
T ss_pred CCCCHHHHhCCCHHHH-------HHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCH--------------HHH
Confidence 3445666677766544 468999999999999 99999999999999 65332 279
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 004720 279 RFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKG 344 (733)
Q Consensus 279 ~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~ 344 (733)
..||.+|...|+|++|+.+++.+.++ .+.+|..++..+.++...|++++|+..+.+.+...+
T Consensus 74 ~~lg~~~~~~g~~~~Ai~~~~~al~l----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 74 MGLAAIYQIKEQFQQAADLYAVAFAL----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999987 578899999999999999999999999999885443
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=2.1e-07 Score=98.71 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=157.4
Q ss_pred HHHHHccCH-HHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcC--CCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 188 RTAWEVLEQ-NLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN--ETNSLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 188 ~~a~~~g~~-~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~--~~~~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
.+.+..|.+ ++|+.++++++.+.|.... +.+..|..+...+ + +++++.++.+++.+ +|.+.
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~t-------aWn~R~~~L~~l~~~~---~~eeL~~~~~~L~~---nPk~y--- 103 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYT-------IWIYRFNILKNLPNRN---LYDELDWCEEIALD---NEKNY--- 103 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHTCTTSC---HHHHHHHHHHHHHH---CTTCC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHH-------HHHHHHHHHHHccccc---HHHHHHHHHHHHHH---CcccH---
Confidence 344556666 5899999999999998664 4777788888888 6 99999999999998 55332
Q ss_pred hhhhhhhhcHHHHHHHHHHHH----hcc---CcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChH--HHHHH
Q 004720 265 EETTELKGLKFKTLRFISAIH----LQK---GEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYN--EAELE 335 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~y----l~~---~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~d--eAi~~ 335 (733)
.+|...+.+. ... +++++++.+++.+.+. .+.+..+++-+.-++...|.++ +++..
T Consensus 104 -----------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 104 -----------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 1555555555 334 6899999999999886 4567778889999999999887 77776
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+..++.. +|.+..+|..|..+
T Consensus 169 ~~~~i~~---------------------------------------------------------d~~N~sAW~~R~~l-- 189 (306)
T 3dra_A 169 VDKVIDT---------------------------------------------------------DLKNNSAWSHRFFL-- 189 (306)
T ss_dssp HHHHHHH---------------------------------------------------------CTTCHHHHHHHHHH--
T ss_pred HHHHHHh---------------------------------------------------------CCCCHHHHHHHHHH--
Confidence 6655532 12222222222111
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC------HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHH
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD------YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCL 489 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~------y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~ 489 (733)
..+.++ |+++++++..++...|.|. .+...+..
T Consensus 190 ----------------------------------l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~-------SaW~y~~~ 228 (306)
T 3dra_A 190 ----------------------------------LFSKKHLATDNTIDEELNYVKDKIVKCPQNP-------STWNYLLG 228 (306)
T ss_dssp ----------------------------------HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH-------HHHHHHHH
T ss_pred ----------------------------------HHhccccchhhhHHHHHHHHHHHHHhCCCCc-------cHHHHHHH
Confidence 112222 7788888888888877664 34566677
Q ss_pred HHHhCCC-HHHHHHHHHHHHhhC---C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 490 CYLGLSL-IDRAQEYITEAEKLE---P-NIASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 490 cyl~l~~-~~~A~e~~~~A~~ld---p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
++.++|. ++...+.+.++..++ | +++....++.++.+.|+.++|+++++.+..
T Consensus 229 ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777766 344556777776665 6 777888888888888888888888888775
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.87 E-value=8.6e-09 Score=110.60 Aligned_cols=159 Identities=17% Similarity=0.080 Sum_probs=129.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc--------h
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF--------E 215 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~--------~ 215 (733)
.+++++.|..+|+++++..+. ....+..++.++...|+++.|+.+|++|+.+.|..+ .
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~--------------~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 190 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLE--------------QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHH--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHH
T ss_pred EEeecccccchhcCCHHHHHH--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 677888888888887765432 124556678899999999999999999999998763 1
Q ss_pred hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHH
Q 004720 216 HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVI 295 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl 295 (733)
.....+.+++++|.+++..|+ +++|+.+|++++++ +|.+ ..++..+|.+|...|+|++|+
T Consensus 191 ~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~a~~~lg~~~~~~g~~~~A~ 250 (336)
T 1p5q_A 191 AQALRLASHLNLAMCHLKLQA---FSAAIESCNKALEL---DSNN--------------EKGLSRRGEAHLAVNDFELAR 250 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCc--------------HHHHHHHHHHHHHCCCHHHHH
Confidence 223446789999999999999 99999999999999 5422 237889999999999999999
Q ss_pred HHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHH-HHhh
Q 004720 296 KCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELEL-RGMV 340 (733)
Q Consensus 296 ~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l-~~~l 340 (733)
.+++.+.++ .+.++.+.+..+.++...|++++|...+ ..++
T Consensus 251 ~~~~~al~l----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 251 ADFQKVLQL----YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH----CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 4667788899999999999999986654 4443
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=6.4e-08 Score=94.85 Aligned_cols=136 Identities=10% Similarity=0.192 Sum_probs=110.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
.+..+|.+|...|+|++|+.+++.+.. .+|.+++..+.++...|++++|+..+...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 66 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD-------PHSRICFNIGCMYTILKNMTEAEKAFTRSINR-------------- 66 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Confidence 567889999999999999999987742 26777899999999999999999987755431
Q ss_pred HHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHh
Q 004720 357 YFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKER 436 (733)
Q Consensus 357 y~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~ 436 (733)
.|++..
T Consensus 67 -------------------------------------------~~~~~~------------------------------- 72 (213)
T 1hh8_A 67 -------------------------------------------DKHLAV------------------------------- 72 (213)
T ss_dssp -------------------------------------------CTTCHH-------------------------------
T ss_pred -------------------------------------------CccchH-------------------------------
Confidence 111110
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc----------hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDV----------ENRILRAKSFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~----------~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
.+.+.|..+++.|+|++|+++|+.++...|.+. . .+....++.++|.+|..+|++++|.+++++
T Consensus 73 -----~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 73 -----AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF-KLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC-EEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc-CccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 123478999999999999999999999888653 2 246678999999999999999999999999
Q ss_pred HHhhCCC
Q 004720 507 AEKLEPN 513 (733)
Q Consensus 507 A~~ldp~ 513 (733)
+++++|+
T Consensus 147 al~~~p~ 153 (213)
T 1hh8_A 147 ATSMKSE 153 (213)
T ss_dssp HHTTCCS
T ss_pred HHHcCcc
Confidence 9999993
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=4.6e-08 Score=89.30 Aligned_cols=103 Identities=17% Similarity=-0.067 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
|+.+..++++|.+|.+.|+|++|++.|++|++++| ++...+.+..++...|++++|++++++.....+.+++.+..-+.
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 57889999999999999999999999999999999 89999999999999999999999999999998888887666667
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 557 EAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
.....|+.+.|+..++..++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcC
Confidence 788899999999999999995433
No 129
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.87 E-value=1.9e-08 Score=109.70 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCc----------hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDV----------ENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE 511 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~----------~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld 511 (733)
.+.+.|..+++.|+|++|++.|+.++.+.+... . .+..+.++.++|.||.++|++++|+++|++|++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~-~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL-QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 345689999999999999999999998554320 1 25788999999999999999999999999999999
Q ss_pred C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHH
Q 004720 512 P-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVA 567 (733)
Q Consensus 512 p-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a 567 (733)
| ++...+.+..++...|++++|++++++.....+.++++...........++...+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9 8999999999999999999999999999999877776554443333333334333
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=8.8e-08 Score=92.64 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=122.1
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......|..+...|+++.|..+|++|++...... .. ......+...+.++...|++++|+.++.++..+.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-----DH---TAEHRALHQVGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC-----Cc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 355667789999999999999999999999875311 11 1123566677899999999999999999999997
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
...+......+.+++++|..+...|+ +++|..++++++++.+... + ......++..++.+|...|+
T Consensus 97 ~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~-~----------~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 97 ASLPEDPLAASANAYEVATVALHFGD---LAGARQEYEKSLVYAQQAD-D----------QVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTT-C----------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCccHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcc-c----------hHHHHHHHHHHHHHHHHCcC
Confidence 66553444677889999999999999 9999999999999865431 1 22345578999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 004720 291 YESVIKCVRVLREG 304 (733)
Q Consensus 291 ~ekAl~~l~~a~~~ 304 (733)
+++|+.+++.+..+
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888764
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=1.3e-07 Score=94.04 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHH
Q 004720 241 NDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAM 320 (733)
Q Consensus 241 e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~ 320 (733)
++|..||+++.+. + + ...+..|+.+|...+++++|+.+++.+.+. .+|.+.+..+
T Consensus 3 ~eA~~~~~~aa~~---g--~--------------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg 57 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---G--D--------------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLA 57 (212)
T ss_dssp -CTTHHHHHHHHT---T--C--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHH
T ss_pred chHHHHHHHHHHC---C--C--------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHH
Confidence 6788999999875 2 1 127888999999999999999999988762 4677777777
Q ss_pred HHHHhcC----ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhc
Q 004720 321 KAWLGLG----RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAG 396 (733)
Q Consensus 321 ~il~~~g----~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~ 396 (733)
.++.. + ++++|+..+++.+..
T Consensus 58 ~~y~~-~g~~~~~~~A~~~~~~A~~~------------------------------------------------------ 82 (212)
T 3rjv_A 58 QLKIR-NPQQADYPQARQLAEKAVEA------------------------------------------------------ 82 (212)
T ss_dssp HHTTS-STTSCCHHHHHHHHHHHHHT------------------------------------------------------
T ss_pred HHHHc-CCCCCCHHHHHHHHHHHHHC------------------------------------------------------
Confidence 77776 5 677777776543210
Q ss_pred CCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCC
Q 004720 397 DEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPF 472 (733)
Q Consensus 397 ~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~ 472 (733)
+ ++. ..++.|..++. .+++++|++||+.+....+.
T Consensus 83 --g---~~~------------------------------------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 83 --G---SKS------------------------------------GEIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp --T---CHH------------------------------------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred --C---CHH------------------------------------HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 0 100 11235666666 78999999999999986542
Q ss_pred CchhhhhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHh
Q 004720 473 DVENRILRAKSFRVLCLCYLG----LSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQK-N-----DQEGAINQILAMTI 542 (733)
Q Consensus 473 ~~~~~~~~akl~r~la~cyl~----l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~-g-----d~e~Al~~l~~~~~ 542 (733)
+ +.+..+++++.+|.. .+++++|++.+++|.++.+++...+.+..+|... | |.++|++.++....
T Consensus 122 ~-----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 122 D-----AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp H-----HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c-----chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 1 346789999999999 8999999999999998833778888899998763 3 89999999988877
Q ss_pred cc
Q 004720 543 CL 544 (733)
Q Consensus 543 ~~ 544 (733)
..
T Consensus 197 ~g 198 (212)
T 3rjv_A 197 EG 198 (212)
T ss_dssp HT
T ss_pred cC
Confidence 63
No 132
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.85 E-value=3.7e-08 Score=93.07 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHH----HHHHHHHHHHHHHHHHHccCHHHHH
Q 004720 125 PSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDE----RKLLLDINIARSRTAWEVLEQNLAI 200 (733)
Q Consensus 125 ~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e----~~~~l~~l~~rA~~a~~~g~~~~A~ 200 (733)
++..+..+......|+.+++.|+|+.|+.+|++|++.++.........+.+ ......++..+|.++...|+++.|+
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 345567888899999999999999999999999999977543211111111 1124568889999999999999999
Q ss_pred HHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 201 TLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 201 ~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
.++++++.++|..++ +++++|.++...|+ +++|+.+|++++++
T Consensus 84 ~~~~~al~~~p~~~~-------a~~~~g~~~~~~g~---~~~A~~~~~~al~l 126 (162)
T 3rkv_A 84 ETSSEVLKREETNEK-------ALFRRAKARIAAWK---LDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHSTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchH-------HHHHHHHHHHHHhc---HHHHHHHHHHHHhc
Confidence 999999999998764 58999999999999 99999999999999
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.85 E-value=8e-08 Score=85.24 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=107.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
+...+..+...|+++.|+..+.++....|..+ ..++.+|..+...|+ +++|..++++++.. .+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~~-- 68 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-------EAWYNLGNAYYKQGD---YDEAIEYYQKALEL---DPRS-- 68 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTC--
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch-------hHHHHHHHHHHHhcC---HHHHHHHHHHHHHH---CCCc--
Confidence 34557788899999999999999998877654 357788888889999 99999999999987 4321
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
..++..++.+|...|++++|+.+++.+... .+.++...+..+.++...|++++|+..+..++.
T Consensus 69 ------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 69 ------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp ------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 126778999999999999999999988875 345677788999999999999999999987764
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=5.7e-08 Score=90.64 Aligned_cols=142 Identities=16% Similarity=0.060 Sum_probs=114.5
Q ss_pred CCChHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 004720 123 GIPSPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITL 202 (733)
Q Consensus 123 ~~~~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~ 202 (733)
+++....+.+......|..++..|+++.|..+|++|++..+. . ..++...+.++...|++++|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--------~------~~~~~~~a~~~~~~~~~~~A~~~ 69 (166)
T 1a17_A 4 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS--------N------AIYYGNRSLAYLRTECYGYALGD 69 (166)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------C------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C------hHHHHHHHHHHHHcCCHHHHHHH
Confidence 345677788899999999999999999999999999986431 1 24566778899999999999999
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHH
Q 004720 203 LNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFIS 282 (733)
Q Consensus 203 ~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La 282 (733)
+.++..+.|..+. +++++|..+...|+ +++|+.+|++++++ .+.+. ....+..++
T Consensus 70 ~~~a~~~~~~~~~-------~~~~~a~~~~~~~~---~~~A~~~~~~a~~~---~p~~~------------~~~~~~~~~ 124 (166)
T 1a17_A 70 ATRAIELDKKYIK-------GYYRRAASNMALGK---FRAALRDYETVVKV---KPHDK------------DAKMKYQEC 124 (166)
T ss_dssp HHHHHHHCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---STTCH------------HHHHHHHHH
T ss_pred HHHHHHhCcccHH-------HHHHHHHHHHHhcc---HHHHHHHHHHHHHh---CCCCH------------HHHHHHHHH
Confidence 9999999887653 58899999999999 99999999999998 44221 111334456
Q ss_pred HHHhccCcHHHHHHHHHHHHc
Q 004720 283 AIHLQKGEYESVIKCVRVLRE 303 (733)
Q Consensus 283 ~~yl~~~~~ekAl~~l~~a~~ 303 (733)
..+...|++++|+.++.....
T Consensus 125 ~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 125 NKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccchHH
Confidence 668888999999998877654
No 135
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.81 E-value=1.2e-08 Score=109.74 Aligned_cols=136 Identities=11% Similarity=0.023 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchh----------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVEN----------RILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~----------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+.+.|+.+++.|+|++|+.+|+.++.+.|.+... ......++.++|.||.++|+|++|+++|+++++++|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 261 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE 261 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4469999999999999999999999988744200 001124899999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhh
Q 004720 513 -NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHE-AVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~-a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
++..++.+..++...|++++|+++++++....+.+++....-... ....+..+.+...+..+++..
T Consensus 262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 899999999999999999999999999988876666543332222 223344555566667777643
No 136
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.81 E-value=1.8e-08 Score=90.01 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~ 530 (733)
..|+|++|+.+|+.++...+.+ ++...++.++|.+|..+|++++|+++++++++++| ++...+.+..++...|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQG----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence 4689999999999999975432 46788999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHhccCCChHHH
Q 004720 531 EGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 531 e~Al~~l~~~~~~~~~~~~lL 551 (733)
++|++.+++.....+.++++.
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHH
Confidence 999999999998887777744
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=1.4e-07 Score=82.80 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
...|..++..|+|++|+++|+.++...|.+ ..++.+++.+|...|++++|+.+++++++.+| ++...+.+..
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 348999999999999999999999887643 35789999999999999999999999999999 8888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
++...|++++|++.++.+....+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 116 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999887767764443
No 138
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.79 E-value=5e-08 Score=93.02 Aligned_cols=122 Identities=11% Similarity=-0.015 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKC 208 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~ 208 (733)
+..+..++..|+..++.|+|+.|+.+|++|+++.|..... ............+.+++.++...|++++|+.++++|+.
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~--~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE--EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT--SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch--hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4467888999999999999999999999999998741100 00011111233788999999999999999999999999
Q ss_pred h-------hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 004720 209 L-------LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 209 l-------~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~ 258 (733)
+ .|+.++. ....+|+.|..+...|+ +++|+..|++|+++...+.
T Consensus 86 l~n~~~e~~pd~~~A---~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 86 YFNRRGELNQDEGKL---WISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHCCTTSTHHHH---HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCC
T ss_pred hhhccccCCCchHHH---HHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcH
Confidence 9 8764432 33345999999999999 9999999999999965544
No 139
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=2.7e-08 Score=95.57 Aligned_cols=161 Identities=12% Similarity=0.023 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.+..++..+...|+++.|+..++++..+.|..+. +++++|..+...|+ +++|+..|++++.. .| +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-------a~~~la~~~~~~g~---~~~A~~~~~~a~~~---~p-~~ 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD-------VKLAKADCLLETKQ---FELAQELLATIPLE---YQ-DN 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH-------HHHHHHHHHHHTTC---HHHHHHHHTTCCGG---GC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-------HHHHHHHHHHHCCC---HHHHHHHHHHhhhc---cC-Ch
Confidence 4556788899999999999999999999998764 58889999999999 99999999988766 43 21
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 262 RTREETTELKGLKFKTLRFISAIHL-QKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl-~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
. ....++.+.+ ..+...+|+.+++.+.+. .+.+|...+..+.++...|++++|+..+...+
T Consensus 74 ~--------------~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 74 S--------------YKSLIAKLELHQQAAESPELKRLEQELAA----NPDNFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp H--------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHhhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 1222232222 222334578888888876 46788889999999999999999999999998
Q ss_pred hccCCc--hHHHHhHHHHHHHhch-hhhHHHHHHHHH
Q 004720 341 EIKGIP--ECIWVSAVEAYFQAAG-TAGAETAKGVFL 374 (733)
Q Consensus 341 ~~~~~~--~~~~ls~~~ly~~~~~-~~a~~~lk~~l~ 374 (733)
...|.+ ...+...+.+|...++ +.+...+++.+.
T Consensus 136 ~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 136 KVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 555443 3466677788877766 667777776544
No 140
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=3.7e-07 Score=90.77 Aligned_cols=177 Identities=10% Similarity=0.016 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHH
Q 004720 198 LAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKT 277 (733)
Q Consensus 198 ~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~ 277 (733)
+|+..+.++.+. ..+ ..++++|..+...++ +++|+.||++|.+. + + ...
T Consensus 4 eA~~~~~~aa~~--g~~-------~a~~~lg~~~~~~~~---~~~A~~~~~~a~~~---g--~--------------~~a 52 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR-------RAQYYLADTWVSSGD---YQKAEYWAQKAAAQ---G--D--------------GDA 52 (212)
T ss_dssp CTTHHHHHHHHT--TCH-------HHHHHHHHHHHHHTC---HHHHHHHHHHHHHT---T--C--------------HHH
T ss_pred hHHHHHHHHHHC--CCH-------HHHHHHHHHHhcCCC---HHHHHHHHHHHHHc---C--C--------------HHH
Confidence 577888888864 334 358889999999999 99999999999875 2 1 126
Q ss_pred HHHHHHHHhccC----cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCchHH
Q 004720 278 LRFISAIHLQKG----EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 278 l~~La~~yl~~~----~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
+..|+.+|.. + ++++|+.+++.+.. ..+|.+.+..+.++.. .+++++|+..+.+.+...
T Consensus 53 ~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------ 119 (212)
T 3rjv_A 53 LALLAQLKIR-NPQQADYPQARQLAEKAVE------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ 119 (212)
T ss_dssp HHHHHHHTTS-STTSCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------
T ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------
Confidence 8889999998 6 89999999999865 3578888888888876 677888887766543210
Q ss_pred HHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCC-cchHHHHHHHHHHHHhhhHHHHHHHhh
Q 004720 350 WVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDG-VSEAAVKLRAKAVAELVSDERVLALFV 428 (733)
Q Consensus 350 ~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp-~~~~~l~~ka~~l~~l~~~e~v~~~~~ 428 (733)
+. +++.
T Consensus 120 --------------------------------------------------~~~~~~~----------------------- 126 (212)
T 3rjv_A 120 --------------------------------------------------ESDAAVD----------------------- 126 (212)
T ss_dssp --------------------------------------------------TSHHHHH-----------------------
T ss_pred --------------------------------------------------CCcchHH-----------------------
Confidence 00 0000
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-C-----CHH
Q 004720 429 GDAAAKERIAMHAVLWNCASILFR----SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-S-----LID 498 (733)
Q Consensus 429 g~~~~~~~~~~~~llW~~g~~~~k----~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-~-----~~~ 498 (733)
...+.|..++. .+++++|++||+.+... +.+ ...+++++.+|..- | +++
T Consensus 127 -------------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-------~~a~~~Lg~~y~~g~gg~~~~d~~ 185 (212)
T 3rjv_A 127 -------------AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-------GYAEYWAGMMFQQGEKGFIEPNKQ 185 (212)
T ss_dssp -------------HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-------THHHHHHHHHHHHCBTTTBCCCHH
T ss_pred -------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-------HHHHHHHHHHHHcCCCCCCCCCHH
Confidence 11235666777 88999999999999876 322 23689999999865 3 899
Q ss_pred HHHHHHHHHHhhCC
Q 004720 499 RAQEYITEAEKLEP 512 (733)
Q Consensus 499 ~A~e~~~~A~~ldp 512 (733)
+|++.+++|.+...
T Consensus 186 ~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 186 KALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999987744
No 141
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.79 E-value=7.6e-08 Score=88.37 Aligned_cols=146 Identities=10% Similarity=-0.057 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+...+.+++..|++++|+.++.++..+.+..+. ....+.+++++|..+...|+ +++|..++++++++.+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGE---FETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCC
Confidence 356667788999999999999999999999876332 34567889999999999999 99999999999999665321
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCC-CCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGG-DHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~-~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
......++..+|.+|...|++++|+.+++.+..... ... ...+...+..+.++...|++++|+..+.
T Consensus 85 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 85 -----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 223456889999999999999999999888776421 000 0112345778889999999999999987
Q ss_pred Hhh
Q 004720 338 GMV 340 (733)
Q Consensus 338 ~~l 340 (733)
..+
T Consensus 154 ~a~ 156 (164)
T 3ro3_A 154 KHL 156 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 142
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.78 E-value=1.6e-08 Score=111.59 Aligned_cols=201 Identities=13% Similarity=0.022 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEA 356 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~l 356 (733)
+|+.||.++++.|++++|++++..+ .+|+++...+.++...|++++|+.++.+.....+. ..+...++.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika---------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC---------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 8999999999999999999998654 46788888899999999999999988766643222 2333334444
Q ss_pred HHHhch-hhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHH
Q 004720 357 YFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKE 435 (733)
Q Consensus 357 y~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~ 435 (733)
|.+.++ .. +..|+ + .|+.
T Consensus 104 Y~Klg~l~e--------------------------~e~f~--~-~pn~-------------------------------- 122 (449)
T 1b89_A 104 LAKTNRLAE--------------------------LEEFI--N-GPNN-------------------------------- 122 (449)
T ss_dssp -----CHHH--------------------------HTTTT--T-CC----------------------------------
T ss_pred HHHhCCHHH--------------------------HHHHH--c-CCcH--------------------------------
Confidence 443322 00 11222 1 1200
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChH
Q 004720 436 RIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIA 515 (733)
Q Consensus 436 ~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~ 515 (733)
..+-+.|..+++.|+|++|..+|..+ + -+.+++.|+.++|+|+.|++.+.+| .++.
T Consensus 123 -----~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~----------n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~ 178 (449)
T 1b89_A 123 -----AHIQQVGDRCYDEKMYDAAKLLYNNV-----S----------NFGRLASTLVHLGEYQAAVDGARKA----NSTR 178 (449)
T ss_dssp -------------------CTTTHHHHHHHT-----T----------CHHHHHHHHHTTTCHHHHHHHHHHH----TCHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHh-----h----------hHHHHHHHHHHhccHHHHHHHHHHc----CCch
Confidence 01113789999999999999999976 1 2578999999999999999999988 2566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 516 SAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
+....-.+.+..|+++.|..+...+. ..|+-+.-.+....+.|..+.++..|+.-++
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 66666777888888988877665432 3666555556667778888888888887776
No 143
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.77 E-value=4.7e-07 Score=98.79 Aligned_cols=219 Identities=10% Similarity=0.008 Sum_probs=157.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhhhcCc----------hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 184 IARSRTAWEVLEQNLAITLLNRAKCLLFGLF----------EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 184 ~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~----------~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+-+|+.+...|++++|+..|.++.+..+... .........+.++|..+...|+ +++|..++++++.+
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~---~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA---KDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 4568888999999999999999999876532 2234555678899999999999 99999999999998
Q ss_pred HhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHH
Q 004720 254 CEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAE 333 (733)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi 333 (733)
.++... ......+...++.++...|++++|+.+++.+..+.
T Consensus 85 ~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 125 (434)
T 4b4t_Q 85 MMQFAK-----------SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA---------------------------- 125 (434)
T ss_dssp HHTSCH-----------HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHccc-----------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----------------------------
Confidence 664310 11122355666777777777777776665554310
Q ss_pred HHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 004720 334 LELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKA 413 (733)
Q Consensus 334 ~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~ 413 (733)
+ .. ...+ .+
T Consensus 126 ------------------------------------~----------------------~~---~~~~-------~~--- 134 (434)
T 4b4t_Q 126 ------------------------------------K----------------------RE---KRVF-------LK--- 134 (434)
T ss_dssp ------------------------------------H----------------------HS---SCCS-------SH---
T ss_pred ------------------------------------H----------------------Hh---CccH-------HH---
Confidence 0 00 0000 00
Q ss_pred HHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh
Q 004720 414 VAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG 493 (733)
Q Consensus 414 l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~ 493 (733)
..+..+.|..++..|+|++|+..++.++........ ++..+.++.+++.+|..
T Consensus 135 --------------------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 135 --------------------------HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD-KPSLVDVHLLESKVYHK 187 (434)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-STHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHH
Confidence 012224788999999999999999999865443222 36789999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCC---Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 494 LSLIDRAQEYITEAEKLEP---NI-----ASAFLKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 494 l~~~~~A~e~~~~A~~ldp---~~-----~t~~~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
+|++++|+.++++++.+.+ ++ ........++...|++++|..++.....
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988743 11 2234567888899999999988876654
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.76 E-value=3.7e-08 Score=110.35 Aligned_cols=156 Identities=17% Similarity=0.088 Sum_probs=123.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch--------
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE-------- 215 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~-------- 215 (733)
.+++++.|..+|+++.+..+. ....+..++..+...|+++.|+.+|++|+.+.|..+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~--------------~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLE--------------QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHH--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH
Confidence 566777777777776654432 1245566788999999999999999999999987631
Q ss_pred hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHH
Q 004720 216 HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVI 295 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl 295 (733)
.....+.+|+++|.+++..++ |++|+.+|++|+++ ++.+ ..++..+|.+|...++|++|+
T Consensus 312 ~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~a~~~~g~a~~~~g~~~~A~ 371 (457)
T 1kt0_A 312 SESFLLAAFLNLAMCYLKLRE---YTKAVECCDKALGL---DSAN--------------EKGLYRRGEAQLLMNEFESAK 371 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---STTC--------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhc---CCcc--------------HHHHHHHHHHHHHccCHHHHH
Confidence 223346789999999999999 99999999999999 5422 237889999999999999999
Q ss_pred HHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHH
Q 004720 296 KCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELR 337 (733)
Q Consensus 296 ~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~ 337 (733)
.+++.+.++ .+.++.++.....++...++++++...+.
T Consensus 372 ~~~~~al~l----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~ 409 (457)
T 1kt0_A 372 GDFEKVLEV----NPQNKAARLQISMCQKKAKEHNERDRRIY 409 (457)
T ss_dssp HHHHHHHTT----C----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 46777888999999999999998887753
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=1e-07 Score=89.44 Aligned_cols=114 Identities=10% Similarity=-0.100 Sum_probs=99.7
Q ss_pred HHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004720 461 EMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILA 539 (733)
Q Consensus 461 ~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~ 539 (733)
..|+.++.+.| +....++++|.++...|++++|++.|+++++++| ++...+.+..++...|++++|++++++
T Consensus 8 ~~~~~al~~~p-------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 8 GTIAMLNEISS-------DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp CSHHHHTTCCH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHcCCH-------hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45667777654 4567789999999999999999999999999999 899999999999999999999999999
Q ss_pred HHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 540 MTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 540 ~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
.....+.+++.+...+......|+.+.|+..++..++..+.+
T Consensus 81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 999988888876666777888999999999999999955443
No 146
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.75 E-value=8.5e-08 Score=108.31 Aligned_cols=154 Identities=7% Similarity=-0.062 Sum_probs=124.8
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+...+.....+...|+|+.|...|++|++..+..+. +.. ......+.+.|.++..+|++++|+.+++|++++..
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-----~~H-p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-----DTN-LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-----TTS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 344556666778899999999999999998764331 111 12356777789999999999999999999999876
Q ss_pred c-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 212 G-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 212 ~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
. .+..+..++..++|+|..+..+|+ |++|..+|++|+++.++..+..+ +..+.++.+|+.++.+++.
T Consensus 383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~---~~eA~~~~~~Al~i~~~~lG~~H---------p~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 383 KLYHHNNAQLGMAVMRAGLTNWHAGH---IEVGHGMICKAYAILLVTHGPSH---------PITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCTTS---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHHHHHHH
Confidence 5 777788899999999999999999 99999999999999887544332 1234467889999999999
Q ss_pred HHHHHHHHHHHHc
Q 004720 291 YESVIKCVRVLRE 303 (733)
Q Consensus 291 ~ekAl~~l~~a~~ 303 (733)
|++|...|.++++
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888876
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=7.3e-08 Score=92.03 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=107.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH-H
Q 004720 447 ASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI-Y 524 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki-~ 524 (733)
+..++..|+|++|+++|+.++...|.+ ..++..+|.+|...|++++|+++++++++++| ++...+.+..+ +
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLY 89 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344578899999999999999987754 35789999999999999999999999999999 88888889999 8
Q ss_pred HhcCCH--HHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 525 LQKNDQ--EGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 525 l~~gd~--e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
...|++ ++|+..++.+....+.++..+...+......|+.+.|+..++..++..+.+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 899998 999999999999888788877777788888999999999999999854443
No 148
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=2.1e-07 Score=106.56 Aligned_cols=130 Identities=12% Similarity=-0.021 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+++.|+|++|++.|+.++...|.+ ...+.++|.+|..+|++++|.++++++++++| ++...+.+.
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 98 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3458999999999999999999999987744 46789999999999999999999999999999 888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhhc
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVAC---QALSVAVAALSNLLNFYT 579 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~---~~~~~a~~aL~~Ll~~~~ 579 (733)
.++...|++++|++++++.....+.+++.+..-+...... |+.+.|...++..++...
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998877787666666777777 899999999988888443
No 149
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=1.5e-07 Score=83.46 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C-------h
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N-------I 514 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~-------~ 514 (733)
+...|..++..|+|++|+.+|+.++...|.+ ..++.++|.+|...|++++|.++++++++++| + +
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 3458999999999999999999999987644 46789999999999999999999999999988 6 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHH
Q 004720 515 ASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 515 ~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL 551 (733)
...+.+..++...|++++|+++++.+....+ +++..
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 115 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVL 115 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHH
Confidence 7888899999999999999999999998766 56533
No 150
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=1.6e-07 Score=98.04 Aligned_cols=165 Identities=10% Similarity=0.027 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-hHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN-IASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~-~~t~~~~~ 521 (733)
++..|..+...|++++|+..|+.++...|.+ ...+.+++.+|+..|++++|++.++++.+.+|+ ....+...
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 4468999999999999999999999998855 357899999999999999999999999999994 44445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHh
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQ 601 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~ 601 (733)
..+...++.++|++.+++.....+.+++....-+......|+.+.|+..|..++...+.. . -..+...+..+ ..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~-~~~a~~~l~~~-~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----A-DGQTRXTFQEI-LA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----G-GGHHHHHHHHH-HH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----c-cchHHHHHHHH-HH
Confidence 557778888999999999999888888877777788889999999999999999943221 1 11222223333 33
Q ss_pred hcCChhHHHHHHHHHHHHh
Q 004720 602 ETGNESEVLKYMKRAHART 620 (733)
Q Consensus 602 ~~~~~~~~l~~~~~A~~~l 620 (733)
..|..++.+..|++++..+
T Consensus 267 ~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 267 ALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp HHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHHHh
Confidence 4466778888888887643
No 151
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.72 E-value=7.9e-08 Score=106.14 Aligned_cols=296 Identities=10% Similarity=0.002 Sum_probs=121.1
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcC
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGL 213 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~ 213 (733)
.-...|+.+++.|++..|+.+|.++-+.. .+ ..-..++...|++++|+.+++++.+..+.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~D~~--~y-----------------~~V~~~ae~~g~~EeAi~yl~~ark~~~~- 93 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKADDPS--SY-----------------MEVVQAANTSGNWEELVKYLQMARKKARE- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCHH--HH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHhCcc-
Confidence 33456777777777777777776542211 11 11122444577777777777777653221
Q ss_pred chhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHH
Q 004720 214 FEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYES 293 (733)
Q Consensus 214 ~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ek 293 (733)
+ .+...++.++.+.|+ ++++..+++ . | . ...|..+|..+...|.|++
T Consensus 94 ~-------~i~~~Li~~Y~Klg~---l~e~e~f~~-------~-p-------n--------~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 94 S-------YVETELIFALAKTNR---LAELEEFIN-------G-P-------N--------NAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ----------------------C---HHHHTTTTT-------C-C-------------------------------CTTT
T ss_pred c-------hhHHHHHHHHHHhCC---HHHHHHHHc-------C-C-------c--------HHHHHHHHHHHHHcCCHHH
Confidence 1 234455555556666 555553332 1 1 0 0167788888888888888
Q ss_pred HHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHHHHHH
Q 004720 294 VIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAETAKGV 372 (733)
Q Consensus 294 Al~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~ 372 (733)
|..+|+.+. .+.-.+.++.++|++++|++.++++- ....|..........+. +.|..+..
T Consensus 141 A~~~Y~~a~------------n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l-- 201 (449)
T 1b89_A 141 AKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLAQMCGL-- 201 (449)
T ss_dssp HHHHHHHTT------------CHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHTTCHHHHHHTTT--
T ss_pred HHHHHHHhh------------hHHHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHHcCcHHHHHHHHH--
Confidence 888887552 23566788888888888888887661 23334333333333332 11111000
Q ss_pred HHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHh
Q 004720 373 FLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFR 452 (733)
Q Consensus 373 l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k 452 (733)
.+ ...|++ ++.....+.+
T Consensus 202 --------------------~L---~~~ad~---------------------------------------l~~lv~~Yek 219 (449)
T 1b89_A 202 --------------------HI---VVHADE---------------------------------------LEELINYYQD 219 (449)
T ss_dssp --------------------TT---TTCHHH---------------------------------------HHHHHHHHHH
T ss_pred --------------------HH---HhCHhh---------------------------------------HHHHHHHHHH
Confidence 11 011100 1124566789
Q ss_pred cCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCC------ChHHHHHHHHHH
Q 004720 453 SKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--SLIDRAQEYITEAEKLEP------NIASAFLKFKIY 524 (733)
Q Consensus 453 ~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--~~~~~A~e~~~~A~~ldp------~~~t~~~~~ki~ 524 (733)
.|+|++|+.+++.+|...+... -++..++.+|.+- +++.+.++.|.....+.| +.....-...+|
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~-------~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHM-------GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCH-------HHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886543 3566777776665 466666666654444433 233445677888
Q ss_pred HhcCCHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004720 525 LQKNDQEGAINQILAMTICLD--FTTDFLSLAAHEAVACQALSVAVAALSNLLN 576 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~--~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~ 576 (733)
.+-+++|.|+. +|..-++ ++.+.+.= ...+-.|.+..-+|+...++
T Consensus 293 ~~~~e~d~A~~---tm~~h~~~a~~~~~f~~---~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 293 DKYEEYDNAII---TMMNHPTDAWKEGQFKD---IITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp HHTTCHHHHHH---HHHHSTTTTCCHHHHHH---HHHHCSSTHHHHHHHHHHHH
T ss_pred HhhchHHHHHH---HHHhCChhhhhhHHHHH---HHhchhHHHHHHHHHHHHHh
Confidence 99999999986 5566542 34442221 12366677777777776665
No 152
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.72 E-value=5.9e-08 Score=109.63 Aligned_cols=146 Identities=8% Similarity=-0.053 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
-+...+..+..+|++++|+.++++++.+... .++.+..++..+.++|..+..+|+ |++|..++++++++.++..+.
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~---~~eA~~~~~~aL~i~~~~lG~ 387 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA---YEEASHYARRMVDGYMKLYHH 387 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHcCC
Confidence 3445577788999999999999999998765 666678899999999999999999 999999999999997764333
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH---HHHHHHHHhcCChHHHHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP---VLAMKAWLGLGRYNEAELEL 336 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~---~lk~~il~~~g~~deAi~~l 336 (733)
. .+..+..+.+||.+|..+|+|++|+.+++.+.++.. ..++.||.+. -+...++...+.+.+|+..+
T Consensus 388 ~---------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 388 N---------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp T---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223567899999999999999999999988888655 5689999977 34445666667777777766
Q ss_pred HHh
Q 004720 337 RGM 339 (733)
Q Consensus 337 ~~~ 339 (733)
+.+
T Consensus 459 ~~~ 461 (490)
T 3n71_A 459 HKM 461 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 153
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=1.5e-07 Score=98.28 Aligned_cols=162 Identities=15% Similarity=-0.019 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
+.+..+|..+...|+++.|+..|++++.+.|..+. +++++|..+...|+ +++|+.+|+++... .|..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-------a~~~la~~~~~~g~---~~~A~~~l~~~~~~---~p~~ 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE-------IGLLLAETLIALNR---SEDAEAVLXTIPLQ---DQDT 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHHTTC---HHHHHHHHTTSCGG---GCSH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh-------HHHHHHHHHHHCCC---HHHHHHHHHhCchh---hcch
Confidence 45567788999999999999999999999998764 58889999999999 99999999988765 3310
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
.......+..+...+.++.|+..++.+... .+.++...+..+.++...|++++|+..+...+
T Consensus 185 --------------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~----~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 185 --------------RYQGLVAQIELLXQAADTPEIQQLQQQVAE----NPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp --------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhhcccCccHHHHHHHHhc----CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 012333455566777888899999888876 46788888999999999999999999999999
Q ss_pred hccCCc--hHHHHhHHHHHHHhch-hhhHHHHHHHH
Q 004720 341 EIKGIP--ECIWVSAVEAYFQAAG-TAGAETAKGVF 373 (733)
Q Consensus 341 ~~~~~~--~~~~ls~~~ly~~~~~-~~a~~~lk~~l 373 (733)
...+.. ...+.+.+.+|...++ +.+...+++.+
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 655544 5667778888877665 56666666544
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=7.8e-08 Score=83.03 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---hHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPN---IASAFLKF 521 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~---~~t~~~~~ 521 (733)
..|..++..|+|++|+.+|+.++...|.+ ..++.++|.+|..+|++++|+++++++++++|. +...+.+.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEE-------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 47999999999999999999999987754 357899999999999999999999999999985 66778899
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhccCCC
Q 004720 522 KIYLQK-NDQEGAINQILAMTICLDFT 547 (733)
Q Consensus 522 ki~l~~-gd~e~Al~~l~~~~~~~~~~ 547 (733)
.++... |++++|+++++.+....+.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999 99999999999998876543
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=3.5e-07 Score=88.37 Aligned_cols=169 Identities=7% Similarity=-0.165 Sum_probs=122.6
Q ss_pred HhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHH
Q 004720 142 WHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLA 221 (733)
Q Consensus 142 ~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La 221 (733)
.+..|+++.|...++.... . +. .....+...+.+++..|+++.|+.++.++..+...... ....+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~---------~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 66 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-H---------PA----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEH 66 (203)
T ss_dssp -----CHHHHHHHHHHHHT-S---------TT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHH
T ss_pred ccccccHHHHHHHHHHhcC-C---------hH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHH
Confidence 3567888888774432211 0 11 01356667788999999999999999999998765332 34577
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
.+++++|..+...|+ +++|..++++++++.+..+.+ ......++.++|.+|...|++++|+.+++.+
T Consensus 67 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 67 RALHQVGMVERMAGN---WDAARRCFLEERELLASLPED----------PLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCcc----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 889999999999999 999999999999997753211 1134568999999999999999999998887
Q ss_pred HccCCCCCCCCCc----HHHHHHHHHHhcCChHHHHHHHHHhh
Q 004720 302 REGSFDGGDHHAS----LPVLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 302 ~~~~~~~~~~~p~----~~~lk~~il~~~g~~deAi~~l~~~l 340 (733)
..... ...+|. ++...+.++...|++++|+..+...+
T Consensus 134 l~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 134 LVYAQ--QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH--hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 75321 111222 23678889999999999999987665
No 156
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=2.5e-07 Score=96.60 Aligned_cols=207 Identities=6% Similarity=0.008 Sum_probs=151.4
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHH-------hHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCccc-
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTF-------AKSALSKNETNSLNDALKLMNEALELCEKGLGEART- 263 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~-------G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~- 263 (733)
.-++...|..+|.++..++|..++. ...+ |..+..... +.+++.++++++++ .|.....
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Da-------w~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l---~p~~l~a~ 84 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDA-------WIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQI---SMSTLNAR 84 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTC---CGGGGCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHH-------HHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcC---Chhhhhhh
Confidence 6899999999999999999987754 5555 566666666 88899999999997 4433221
Q ss_pred -c-hh------hhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHH
Q 004720 264 -R-EE------TTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELE 335 (733)
Q Consensus 264 -~-~~------~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~ 335 (733)
. .+ ++ -..+..+...++.++...|+|++|.+.++.+... ++.++ ..|..+.++++.+++++|+..
T Consensus 85 ~~~~g~y~~~~~~--v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 85 IAIGGLYGDITYP--VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp EECCTTTCCCEEE--CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred hccCCcccccccc--cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 1 11 00 0123346666799999999999999999877653 34555 779999999999999999999
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVA 415 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~ 415 (733)
+...+..++ |.. .
T Consensus 158 l~~a~~~~d--------------------------------------------------------~~~-----~------ 170 (282)
T 4f3v_A 158 VKSAGKWPD--------------------------------------------------------KFL-----A------ 170 (282)
T ss_dssp HTTGGGCSC--------------------------------------------------------HHH-----H------
T ss_pred HHHhhccCC--------------------------------------------------------ccc-----H------
Confidence 764432110 000 0
Q ss_pred HhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC
Q 004720 416 ELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS 495 (733)
Q Consensus 416 ~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~ 495 (733)
+.+..+.|..+...|++++|+.||+.++.- +.++ .-.....++++.|+.++|
T Consensus 171 ------------------------~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P---~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 171 ------------------------GAAGVAHGVAAANLALFTEAERRLTEANDS-PAGE---ACARAIAWYLAMARRSQG 222 (282)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTT---TTHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCc---cccHHHHHHHHHHHHHcC
Confidence 001123788899999999999999999742 1101 125568899999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 004720 496 LIDRAQEYITEAEKLEPN 513 (733)
Q Consensus 496 ~~~~A~e~~~~A~~ldp~ 513 (733)
+.++|.+.++++...+|+
T Consensus 223 r~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 999999999999999995
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=4.6e-07 Score=83.72 Aligned_cols=113 Identities=11% Similarity=-0.118 Sum_probs=96.8
Q ss_pred HHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 462 MFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 462 ~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
.|+.++...| +....++++|.++...|++++|++.|+++++.+| ++...+.+..++...|++++|+.++++.
T Consensus 6 ~l~~al~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 6 TLAMLRGLSE-------DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp ---CCTTCCH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHcCCH-------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555543 4567789999999999999999999999999999 8999999999999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 541 TICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 541 ~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
....+.+++.+...+......|+.+.|+..++..++..+.+
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99988888877766778888999999999999999865544
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=4.1e-07 Score=80.49 Aligned_cols=119 Identities=10% Similarity=-0.068 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+...+..+...|+++.|+..++++..+.|..+ .+++++|..+...|+ +++|+.++++++++ .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~ 78 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA-------VYFCNRAAAYSKLGN---YAGAVQDCERAICI---DPA 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHhhc---hHHHHHHHHHHHhc---Ccc
Confidence 35666778889999999999999999999887654 357888999999999 99999999999998 432
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCCh
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRY 329 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~ 329 (733)
+ ..++..+|.+|...|++++|+.+++.+... .+.++...+..+.++...|++
T Consensus 79 ~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 Y--------------SKAYGRMGLALSSLNKHVEAVAYYKKALEL----DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHTTC
T ss_pred C--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHhcC
Confidence 1 126788999999999999999999988876 345667778888888877765
No 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=3.4e-07 Score=87.30 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHH-HHhCCCH--HHHHHHHHHHHhhCC-ChHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLC-YLGLSLI--DRAQEYITEAEKLEP-NIASAF 518 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~c-yl~l~~~--~~A~e~~~~A~~ldp-~~~t~~ 518 (733)
++..|..++..|+|++|+++|+.++...|.+ ..++.+++.+ |...|++ ++|+++++++++.+| ++...+
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLRGEN-------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 3458999999999999999999999987754 3578999999 9999999 999999999999999 899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCChHH
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTICLDFTTDF 550 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~l 550 (733)
.+..++...|++++|+..++.+....+.+++.
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999999887766553
No 160
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.9e-08 Score=87.69 Aligned_cols=89 Identities=7% Similarity=0.051 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C------hH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N------IA 515 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~------~~ 515 (733)
+.+.|..++..|+|++|+++|+.++...|.+ ..++.++|.||..+|++++|+++++++++++| + ..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQN-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 3458999999999999999999999987754 46789999999999999999999999999999 6 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 004720 516 SAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 516 t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
..+.+..++...|+++.|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 77778888888887777766553
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=1.3e-07 Score=98.45 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..+++.|+|++|++.|+.++...|.+ +.++.++|.||.++|++++|++++++|++++| ++...+.++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3458999999999999999999999987744 46899999999999999999999999999999 899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccC
Q 004720 522 KIYLQKNDQEGAINQILAMTICLD 545 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~ 545 (733)
.++...|++++|+..++......+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999887754
No 162
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=4.2e-07 Score=81.13 Aligned_cols=117 Identities=11% Similarity=-0.068 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
...+..++..+...|+++.|+.+++++..+.|..+ .+++++|..+...|+ +++|+.+|++++++ .+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~---~~~A~~~~~~a~~~---~~~ 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA-------KLYSNRAACYTKLLE---FQLALKDCEECIQL---EPT 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH-------HHHHHHHHHHTTTTC---HHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHHhcc---HHHHHHHHHHHHHh---CCC
Confidence 34556678888899999999999999998877654 457888998889999 99999999999987 432
Q ss_pred CcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC
Q 004720 260 EARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG 327 (733)
Q Consensus 260 ~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g 327 (733)
+ ..++..+|.+|...|++++|+.+++.+... .+.++...+..+.++...|
T Consensus 83 ~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 F--------------IKGYTRKAAALEAMKDYTKAMDVYQKALDL----DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CGGGTHHHHHHHHHHHHHT
T ss_pred c--------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhc
Confidence 1 237788899999999999999999888775 3455666666676666554
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.59 E-value=1.2e-07 Score=106.74 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKI 523 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki 523 (733)
+.|..+++.|+|++|++.|+.++.+.|.+ +.++.++|.||.++|++++|++++++|++++| ++...+.+..+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 47888999999999999999999987643 57899999999999999999999999999999 89999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHH--HHHcCCHHHHHHHHH
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHE--AVACQALSVAVAALS 572 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~--a~~~~~~~~a~~aL~ 572 (733)
+...|++++|++++++..+..+.+++....-... ..+.|+.+.|+..++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999877666543332222 444556666666555
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.2e-06 Score=78.60 Aligned_cols=100 Identities=15% Similarity=-0.033 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHE 557 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~ 557 (733)
..+..++++|.++.+.|++++|++.|+++++++| ++...+.+..++...|++++|+.++++.....+.++..+..-+..
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4678899999999999999999999999999999 899999999999999999999999999999988888877766778
Q ss_pred HHHcCCHHHHHHHHHHHHhhh
Q 004720 558 AVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 558 a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
....|+.+.|+..++..++..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888999999999999998854
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=3.6e-07 Score=95.18 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=84.7
Q ss_pred HHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 004720 221 ANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRV 300 (733)
Q Consensus 221 a~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~ 300 (733)
+..+++.|..++..|+ |++|+..|++++.+ .|.+ ...+.++|.+|...|+|++|+..++.
T Consensus 4 a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~---~p~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRK---YPEAAACYGRAITR---NPLV--------------AVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCcc--------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3568899999999999 99999999999998 5422 23788999999999999999999999
Q ss_pred HHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 301 LREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 301 a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+.+. .+.++.+++..+.++...|++++|+..+...+.
T Consensus 64 al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 64 ALEL----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9886 466778889999999999999999999987763
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=6.3e-07 Score=87.43 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchh---------HHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHH
Q 004720 180 LDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEH---------YKSLANQYLTFAKSALSKNETNSLNDALKLMNEA 250 (733)
Q Consensus 180 l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~---------~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~A 250 (733)
...+...+..+...|++++|+..|.+++.+.|..+.. ......+++++|.+++..|+ +++|+.+++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 3456667889999999999999999999998876521 11234678899999999999 99999999999
Q ss_pred HHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChH
Q 004720 251 LELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYN 330 (733)
Q Consensus 251 lel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~d 330 (733)
+++ ++.+ ..++..+|.+|...|+|++|+.+++.+... .+.++.+......++...++.+
T Consensus 115 l~~---~p~~--------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 115 LKI---DKNN--------------VKALYKLGVANMYFGFLEEAKENLYKAASL----NPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHH---STTC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHH
T ss_pred HHh---Cccc--------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHHHHH
Confidence 998 4422 237888999999999999999999999886 3566777777778887777777
Q ss_pred HHHHH
Q 004720 331 EAELE 335 (733)
Q Consensus 331 eAi~~ 335 (733)
++...
T Consensus 174 ~~~~~ 178 (198)
T 2fbn_A 174 KKDKL 178 (198)
T ss_dssp C----
T ss_pred HHHHH
Confidence 66644
No 167
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.56 E-value=6.7e-06 Score=87.06 Aligned_cols=235 Identities=9% Similarity=-0.048 Sum_probs=161.4
Q ss_pred HHHHHhccCc-HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC--ChHHHHHHHHHhhhccCCchHHHHhHHHHH
Q 004720 281 ISAIHLQKGE-YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG--RYNEAELELRGMVEIKGIPECIWVSAVEAY 357 (733)
Q Consensus 281 La~~yl~~~~-~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g--~~deAi~~l~~~l~~~~~~~~~~ls~~~ly 357 (733)
...+....+. .++|+.+.+.+..+ ++.+..+++.+..++...| ++++++..+..++...|..-.+|-.=..++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINE----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 3444455554 46899999999987 5788888999999999999 999999999888854444444431111111
Q ss_pred HHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhh
Q 004720 358 FQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERI 437 (733)
Q Consensus 358 ~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~ 437 (733)
..++ ..++. ......++.++++++ +.+|.+..+|..
T Consensus 114 ------------~~~~-~~l~~-~~~~~~EL~~~~~~l--~~~pkny~aW~~---------------------------- 149 (306)
T 3dra_A 114 ------------GQIM-ELNNN-DFDPYREFDILEAML--SSDPKNHHVWSY---------------------------- 149 (306)
T ss_dssp ------------HHHH-HHTTT-CCCTHHHHHHHHHHH--HHCTTCHHHHHH----------------------------
T ss_pred ------------HHHH-Hhccc-cCCHHHHHHHHHHHH--HhCCCCHHHHHH----------------------------
Confidence 0000 11110 011245555666666 455545444422
Q ss_pred HHHHHHHHHHHHHHhcCCHH--HHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC------HHHHHHHHHHHHh
Q 004720 438 AMHAVLWNCASILFRSKDYE--ASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL------IDRAQEYITEAEK 509 (733)
Q Consensus 438 ~~~~llW~~g~~~~k~~~y~--~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~------~~~A~e~~~~A~~ 509 (733)
.+....+.|+|+ ++++++..+++.+|.|. .+..+++.+..+++. ++++.+++++++.
T Consensus 150 --------R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~-------sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 150 --------RKWLVDTFDLHNDAKELSFVDKVIDTDLKNN-------SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp --------HHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHhcccChHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 455555667788 99999999999988774 356777777888887 9999999999999
Q ss_pred hCC-ChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 004720 510 LEP-NIASAFLKFKIYLQKNDQEG-AINQILAMTICL---DFTTDFLSLAAHEAVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 510 ldp-~~~t~~~~~ki~l~~gd~e~-Al~~l~~~~~~~---~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
.+| +...-+++..++...|.... ..+..+++.... ..++..|..-+....+.|+.+.|+++++.|.+++
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY 288 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence 999 88888888888877777544 444555555543 3355666665666667899999999999988744
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=2.7e-06 Score=80.18 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=95.7
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+..+..++.++.+|...|+|++|+++|+++++++| ++...+.+..++...|++++|+.++++.....+.++..+..-+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 57789999999999999999999999999999999 89999999999999999999999999999998888887777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 557 EAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
.....|+.+.|+..++..++....+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCc
Confidence 8889999999999999999965444
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.53 E-value=7.2e-07 Score=97.09 Aligned_cols=143 Identities=10% Similarity=0.019 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCCh---HHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDS---DERKLLLDINIARSRTAWEVLEQNLAITL 202 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~---~e~~~~l~~l~~rA~~a~~~g~~~~A~~~ 202 (733)
+.....+......|+.+++.|+|+.|+.+|++|+++.+....... .+ ........++..+|.++..+|++++|+.+
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE-DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccC-hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 455667788889999999999999999999999997664210000 00 01112346788889999999999999999
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHH
Q 004720 203 LNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFIS 282 (733)
Q Consensus 203 ~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La 282 (733)
+++++.+.|..++ +++++|.++...++ +++|+.+|++|+++ .|.+. .++..++
T Consensus 296 ~~~al~~~p~~~~-------a~~~lg~~~~~~g~---~~eA~~~l~~Al~l---~P~~~--------------~~~~~l~ 348 (370)
T 1ihg_A 296 CLEALEIDPSNTK-------ALYRRAQGWQGLKE---YDQALADLKKAQEI---APEDK--------------AIQAELL 348 (370)
T ss_dssp HHHHHTTCTTCHH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTCH--------------HHHHHHH
T ss_pred HHHHHHhCchhHH-------HHHHHHHHHHHccC---HHHHHHHHHHHHHh---CCCCH--------------HHHHHHH
Confidence 9999999987654 58999999999999 99999999999999 54321 2566778
Q ss_pred HHHhccCcHHHHHH
Q 004720 283 AIHLQKGEYESVIK 296 (733)
Q Consensus 283 ~~yl~~~~~ekAl~ 296 (733)
.++...++++++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777666653
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=1.6e-06 Score=75.18 Aligned_cols=109 Identities=12% Similarity=-0.075 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+...+..+...|+++.|+..++++..+.|..+. +++++|..+...|+ +++|+.++++++++ .+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---~~~~ 71 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV-------LYSNRSAAYAKKGD---YQKAYEDGCKTVDL---KPDW 71 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-------HHHHHHHHHHhhcc---HHHHHHHHHHHHHh---Cccc
Confidence 45566688888999999999999999988887653 57788888888999 99999999999988 4321
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAM 320 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~ 320 (733)
..++..+|.+|...|++++|+.+++.+... .+.+|.......
T Consensus 72 --------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~ 113 (118)
T 1elw_A 72 --------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKH----EANNPQLKEGLQ 113 (118)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc----CCCCHHHHHHHH
Confidence 126788899999999999999999888875 344454444333
No 171
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=4.4e-06 Score=87.12 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=139.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHH-------HHHHHhcCChHHHHHHHHHhhhccCCchHH
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLA-------MKAWLGLGRYNEAELELRGMVEIKGIPECI 349 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk-------~~il~~~g~~deAi~~l~~~l~~~~~~~~~ 349 (733)
.+...+..| ..++++.|..++..+... .+..+..+.-+ +.++...+++.+++..+.+.+...|.....
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 444455566 478999999999999886 45667777666 678888888888888887776544433333
Q ss_pred HHhHHHHH--HHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHh
Q 004720 350 WVSAVEAY--FQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALF 427 (733)
Q Consensus 350 ~ls~~~ly--~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~ 427 (733)
.+++.-+| +..- -.++++ .....+..+......+...+.|
T Consensus 84 ~~~~~g~y~~~~~~------------------------------------v~~r~d--l~LayA~~L~~~g~y~eA~~~l 125 (282)
T 4f3v_A 84 RIAIGGLYGDITYP------------------------------------VTSPLA--ITMGFAACEAAQGNYADAMEAL 125 (282)
T ss_dssp EEECCTTTCCCEEE------------------------------------CSSHHH--HHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhccCCcccccccc------------------------------------cCCHhH--HHHHHHHHHHHCCCHHHHHHHH
Confidence 22200001 0000 000000 0011111122222222233333
Q ss_pred hcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 428 VGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 428 ~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
..-..... ... ..|..|..+++.|+|++|+..|+.+.... + +.....++++++.++..+|++++|+..|+++
T Consensus 126 ~~~~~~~p-~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d---~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a 197 (282)
T 4f3v_A 126 EAAPVAGS-EHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP--D---KFLAGAAGVAHGVAAANLALFTEAERRLTEA 197 (282)
T ss_dssp TSSCCTTC-HHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCC-chH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC--C---cccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 21111000 111 56789999999999999999999776532 1 1233568999999999999999999999999
Q ss_pred HhhC--C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 004720 508 EKLE--P--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF 546 (733)
Q Consensus 508 ~~ld--p--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~ 546 (733)
..-. | .+...+....++.+.|+.++|...++.+....+.
T Consensus 198 ~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 198 NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 7544 5 3457889999999999999999999999887553
No 172
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=2.6e-06 Score=74.46 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
..+...+.++...|+++.|+..+.++....|..+ .+++++|..+...|+ +++|+.+|++++++ .+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~~~~~---~~~A~~~~~~~~~~---~~~~ 76 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-------EAWYNLGNAYYKQGD---YDEAIEYYQKALEL---DPNN 76 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-------HHHHHHHHHHHHhCC---HHHHHHHHHHHHHh---CCcc
Confidence 3445567778888999999999999988877644 357778888888888 89999999988887 3311
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG 325 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~ 325 (733)
..++..++.+|...|++++|+.+++.+... .+.++...+..+.++..
T Consensus 77 --------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 77 --------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHh
Confidence 126778888888889999999888888775 34555555555555443
No 173
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.45 E-value=3.7e-05 Score=81.22 Aligned_cols=161 Identities=12% Similarity=-0.022 Sum_probs=113.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-------ChHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-------NIASAF 518 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-------~~~t~~ 518 (733)
.|.+++..|++++|++|+..++...|. .+...++..++.+|++.|+.+.|.+.++++.+.+| .+.+++
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~-----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEA-----EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCC-----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 688999999999999999999876552 24557889999999999999999999999999998 344555
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC--CC--CCchhHHH
Q 004720 519 LKFKIYLQKN--DQEGAINQILAMTICLDF--TTDFLSLAAHEAVACQALSVAVAALSNLLNFYTS--GK--PMPTKEVV 590 (733)
Q Consensus 519 ~~~ki~l~~g--d~e~Al~~l~~~~~~~~~--~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~--~~--~~~~~~~~ 590 (733)
...-+.+..| ++++|...|+.+....+. ++.+|.- ..+..|+.+.|...|+.+.+.+.. .+ ..|. -+.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~-~~~ 256 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY-KPT 256 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS-HHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC-CHH
Confidence 5565566666 899999999998765542 2333333 456788999999999988775422 00 0022 245
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 004720 591 VLRTIVTILTQETGNESEVLKYMKRAHA 618 (733)
Q Consensus 591 ~lR~li~l~~~~~~~~~~~l~~~~~A~~ 618 (733)
.+..+|.+-... |+ +...++.++.+
T Consensus 257 ~LaN~i~l~~~l-gk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 257 FLANQITLALMQ-GL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHT-TC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHh-Ch--HHHHHHHHHHH
Confidence 566676664322 22 33445555443
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.44 E-value=1.4e-06 Score=74.97 Aligned_cols=102 Identities=11% Similarity=-0.019 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC--ChHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDF--TTDFLSLAA 555 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~--~~~lL~la~ 555 (733)
+.+..+..+|.+|...|++++|+++++++++++| +....+.+..++...|++++|++++++.....+. ++..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 4456788999999999999999999999999999 8888999999999999999999999999999887 788777777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhhhcC
Q 004720 556 HEAVAC-QALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 556 ~~a~~~-~~~~~a~~aL~~Ll~~~~~ 580 (733)
...... |+.+.|+..++.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 778889 9999999999999985443
No 175
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.43 E-value=6.4e-07 Score=78.92 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFL 519 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~ 519 (733)
..|..+|+.|+|+.|+.||+.|+...+.+.......+.++.++|.||.++|++++|..+++++++++| +......
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 48999999999999999999999755322100146789999999999999999999999999999999 7655443
No 176
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.41 E-value=2e-06 Score=71.76 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHH
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKF 521 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ 521 (733)
+.+.|..++..|+|++|+.+|+.++...|.+ ..++.+++.+|...|++++|+++++++++++| ++...+.+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3458999999999999999999999887644 45789999999999999999999999999999 888888888
Q ss_pred HHHHhcC
Q 004720 522 KIYLQKN 528 (733)
Q Consensus 522 ki~l~~g 528 (733)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 8876544
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=2.6e-06 Score=75.30 Aligned_cols=106 Identities=20% Similarity=0.188 Sum_probs=91.1
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......|..++..|+++.|..+|+++++..+. . ..++...+.++...|+++.|+.++.++..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT--------N------MTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------c------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3456678899999999999999999999986431 1 2456667889999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
|..+........+++++|..+...|+ +++|..+|++++++
T Consensus 69 ~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 69 RENREDYRQIAKAYARIGNSYFKEEK---YKDAIHFYNKSLAE 108 (131)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHh
Confidence 87655566668889999999999999 99999999999998
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.37 E-value=7.7e-07 Score=95.42 Aligned_cols=118 Identities=11% Similarity=-0.051 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHh-hccCCC--hHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLD-ISRISD--SDERKLLLDINIARSRTAWEVLEQNLAITL 202 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~-~~~~~~--~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~ 202 (733)
+.-.+.+......|+.+++.|+|+.|..+|++|+...+... ....+. +.........+.+++.++...|+++.|+.+
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33456778888999999999999999999999998765311 111000 000111123556667777777777777777
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 203 LNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 203 ~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+++++.+.|..++ +++++|..+...|+ +++|+.+|++++++
T Consensus 253 ~~~al~~~p~~~~-------a~~~lg~a~~~~g~---~~~A~~~l~~al~l 293 (338)
T 2if4_A 253 CNIVLTEEEKNPK-------ALFRRGKAKAELGQ---MDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHCTTCHH-------HHHHHHHHHHTTTC---HHHHHHHHHHTTC-
T ss_pred HHHHHHhCCCCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 7777777766543 47777777777777 77777777777776
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.35 E-value=5.1e-07 Score=80.46 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=69.7
Q ss_pred HccCHHHHHHHHHHHHhh---hhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhh
Q 004720 192 EVLEQNLAITLLNRAKCL---LFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETT 268 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l---~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~ 268 (733)
.+|++++|+..+++++.+ +|. ...+++++|..+...|+ +++|+.+|++++++ .|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-------~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~---~p~~-------- 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-------LAECYLGLGSTFRTLGE---YRKAEAVLANGVKQ---FPNH-------- 60 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-------HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---CTTC--------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-------HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCc--------
Confidence 478999999999999998 454 34578999999999999 99999999999998 5432
Q ss_pred hhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHcc
Q 004720 269 ELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREG 304 (733)
Q Consensus 269 ~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~ 304 (733)
..++..+|.+|...|++++|+.+++.+...
T Consensus 61 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 61 ------QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 127888999999999999999999988875
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.5e-05 Score=70.97 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC---hHHHHHHH
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI---ASAFLKFKIYLQKNDQEGAINQILAMTICLDFT---TDFLSLAA 555 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~---~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~---~~lL~la~ 555 (733)
.++++|.++...|++++|++.++++++.+| ++ ...+.+..++...|++++|+..++.+....+.+ ++.+...+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 468899999999999999999999999999 66 688899999999999999999999999887766 66666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 556 HEAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 556 ~~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
......|+.+.|+..++.+++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 7778899999999999999996543
No 181
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.34 E-value=1.4e-06 Score=96.74 Aligned_cols=114 Identities=7% Similarity=-0.063 Sum_probs=96.8
Q ss_pred HHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhh
Q 004720 191 WEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTE 269 (733)
Q Consensus 191 ~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~ 269 (733)
-..|++++|+.++++++.+... .++.+..++..+.++|..+..+|+ |++|..++++++++.++..+..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~---~~eA~~~~~~aL~i~~~~lG~~-------- 377 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD---WEGALKYGQKIIKPYSKHYPVY-------- 377 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCSS--------
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHcCCC--------
Confidence 3578999999999999998665 666678899999999999999999 9999999999999977754333
Q ss_pred hhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH
Q 004720 270 LKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP 316 (733)
Q Consensus 270 ~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~ 316 (733)
.+..+..+.+||.+|..+|+|++|+.+++.+.++.. ..++.||.+.
T Consensus 378 -Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 378 -SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred -ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 223566899999999999999999999998888665 5688899865
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=4e-07 Score=102.50 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=100.6
Q ss_pred HHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhh
Q 004720 132 ASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLF 211 (733)
Q Consensus 132 ~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~ 211 (733)
+......|+.+++.|+|+.|..+|++|++..+. . ...+..+|.++..+|++++|+.++++++++.|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--------~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 71 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS--------N------AIYYGNRSLAYLRTECYGYALGDATRAIELDK 71 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--------c------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 344567899999999999999999999987432 1 25666779999999999999999999999988
Q ss_pred cCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHH--HhccC
Q 004720 212 GLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAI--HLQKG 289 (733)
Q Consensus 212 ~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~--yl~~~ 289 (733)
..+. .++++|..+...|+ +++|+.+|++++++ .|.+.. ++..++.+ +...|
T Consensus 72 ~~~~-------~~~~lg~~~~~~g~---~~eA~~~~~~al~~---~p~~~~--------------~~~~l~~~~~~~~~g 124 (477)
T 1wao_1 72 KYIK-------GYYRRAASNMALGK---FRAALRDYETVVKV---KPHDKD--------------AKMKYQECNKIVKQK 124 (477)
T ss_dssp TCHH-------HHHHHHHHHHHHTC---HHHHHHHHHHHHHH---STTCTT--------------HHHHHHHHHHHHHHH
T ss_pred CCHH-------HHHHHHHHHHHcCC---HHHHHHHHHHHHHh---CCCCHH--------------HHHHHHHHHHHHHHH
Confidence 7654 58899999999999 99999999999998 543321 45556666 88889
Q ss_pred cHHHHHHHHH
Q 004720 290 EYESVIKCVR 299 (733)
Q Consensus 290 ~~ekAl~~l~ 299 (733)
+|++|+.+++
T Consensus 125 ~~~~A~~~~~ 134 (477)
T 1wao_1 125 AFERAIAGDE 134 (477)
T ss_dssp HHCCC-----
T ss_pred HHHHHhcccc
Confidence 9999999988
No 183
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=7.5e-06 Score=73.82 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=93.4
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+..+..+..+|.+|...|++++|++.++++++++| ++...+.+..++...|++++|+.+++......+.++..+...+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 35678899999999999999999999999999999 89999999999999999999999999999998888887777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcC
Q 004720 557 EAVACQALSVAVAALSNLLNFYTS 580 (733)
Q Consensus 557 ~a~~~~~~~~a~~aL~~Ll~~~~~ 580 (733)
.....|+.+.|+..++..++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999999885444
No 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.29 E-value=7.5e-07 Score=76.26 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAK-SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFK 522 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~ak-l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~k 522 (733)
+.|..+++.|+|++|+++|+.++...|.+ .. ++.++|.||..+|++++|+++++++++++| ++...+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---
Confidence 47899999999999999999999987754 34 899999999999999999999999999999 6655433
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 004720 523 IYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~ 543 (733)
+..++|+.++++....
T Consensus 75 -----~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 -----KMVMDILNFYNKDMYN 90 (99)
T ss_dssp -----HHHHHHHHHHCCTTHH
T ss_pred -----HHHHHHHHHHHHHhcc
Confidence 4566777777655544
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.27 E-value=6.7e-06 Score=74.08 Aligned_cols=95 Identities=14% Similarity=-0.070 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHc
Q 004720 483 SFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVAC 561 (733)
Q Consensus 483 l~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~ 561 (733)
-.+.+|.+++..|++++|++.++++++.+| ++...+.+..++...|++++|+.++++.....+.+++.+..-+......
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999 8999999999999999999999999999999888887666656677778
Q ss_pred CCHHHHHHHHHHHHhh
Q 004720 562 QALSVAVAALSNLLNF 577 (733)
Q Consensus 562 ~~~~~a~~aL~~Ll~~ 577 (733)
|+.+.|+..++..++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8999999999988874
No 186
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.26 E-value=4.3e-06 Score=92.86 Aligned_cols=122 Identities=9% Similarity=0.032 Sum_probs=101.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
+......+..+|++++|+.++++++.+... .++.+..++.++.++|..+..+|+ |++|..++++++++.++..+..
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~---~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL---LEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhHHHHcCCC
Confidence 334456677899999999999999987554 666677899999999999999999 9999999999999977643322
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCC-CCCCCCCcHH
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSF-DGGDHHASLP 316 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~-~~~~~~p~~~ 316 (733)
.+..+..+.+||.+|..+|+|++|+.+++.+.++.. ..|+.||.+.
T Consensus 367 ---------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 367 ---------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred ---------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 233567899999999999999999999988888655 5688899865
No 187
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.20 E-value=8.6e-05 Score=78.38 Aligned_cols=91 Identities=8% Similarity=-0.154 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----------CC-ChHHHHHHHH
Q 004720 454 KDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL----------EP-NIASAFLKFK 522 (733)
Q Consensus 454 ~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l----------dp-~~~t~~~~~k 522 (733)
++|++|...|+....-+|.. ....++.+ |++++|++++|.+.++..++. +| ++.+...+.-
T Consensus 192 ~~~q~A~~~f~El~~~~p~~-----~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTFPTW-----KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp STTTHHHHHHHHHHTTSCSH-----HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCc-----ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 48999999999877655531 11233444 899999999999999877776 47 7777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCChHHHHHH
Q 004720 523 IYLQKNDQEGAINQILAMTICLDFTTDFLSLA 554 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la 554 (733)
++...|+ +|.+.+.++....+.+|-++.+.
T Consensus 264 l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 7777787 78888888888888777655543
No 188
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.20 E-value=1.1e-05 Score=89.62 Aligned_cols=118 Identities=10% Similarity=-0.018 Sum_probs=94.8
Q ss_pred HHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhc-
Q 004720 134 FYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFG- 212 (733)
Q Consensus 134 ~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~- 212 (733)
..+..++.--+.|+|+.|...|++|++..+.... +.. ......+.+.|.+|..+|++++|+.+++|++.+...
T Consensus 300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg-----~~H-p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~ 373 (433)
T 3qww_A 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE-----DSN-VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH 373 (433)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBC-----TTS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccC-----hhc-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 3444455445678999999999999998764331 111 123567777899999999999999999999998765
Q ss_pred CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 004720 213 LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 213 ~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~ 260 (733)
.+..+..++..|+|+|..+..+|+ |++|..+|++|+++.++..+.
T Consensus 374 lG~~Hp~~a~~l~nLa~~~~~qg~---~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 374 YPVYSLNVASMWLKLGRLYMGLEN---KAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCT
T ss_pred cCCCChHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHcCC
Confidence 666778899999999999999999 999999999999998875443
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.20 E-value=0.00025 Score=75.70 Aligned_cols=258 Identities=9% Similarity=-0.028 Sum_probs=155.3
Q ss_pred HHHHHHccCHH-HHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCC-------CHHHHHHHHHHHHHHHhcCC
Q 004720 187 SRTAWEVLEQN-LAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETN-------SLNDALKLMNEALELCEKGL 258 (733)
Q Consensus 187 A~~a~~~g~~~-~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~-------~~e~A~~~l~~Alel~~~~~ 258 (733)
.......|++. +|+..+++++.++|.+... .+..|..+...+... .+++++.++.+++.. +|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~yta-------Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~---~P 105 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATL-------WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NP 105 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHH-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHH-------HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---CC
Confidence 34445678887 8999999999999986642 334444443333200 056777788887776 44
Q ss_pred CCcccchhhhhhhhcHHHHHHHHHHHHhccC--cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCC-hHHHHHH
Q 004720 259 GEARTREETTELKGLKFKTLRFISAIHLQKG--EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGR-YNEAELE 335 (733)
Q Consensus 259 ~~~~~~~~~~~~~el~~~~l~~La~~yl~~~--~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~-~deAi~~ 335 (733)
.+ ..+|...+.+....+ .+++++.+++.+.+. .+.+..++.-+.-++...|. +++++..
T Consensus 106 Kn--------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 106 KS--------------YGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp TC--------------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CC--------------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 22 237777788877766 599999999999986 45667788889999999998 5899999
Q ss_pred HHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCch-HHHHHHHHHHhhcCCCCCcchHHH-HHHHHH
Q 004720 336 LRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHVS-AKAAVRMAHRVAGDEGDGVSEAAV-KLRAKA 413 (733)
Q Consensus 336 l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~-~~~a~~~l~~~l~~~~sp~~~~~l-~~ka~~ 413 (733)
+..++...+.....|-.-..++.......+.. -.++.... ...++..+.+.+ ...|++.++| +.+..+
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~--------~~~~~~~~~~~eEle~~~~ai--~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG--------PQGRLPENVLLKELELVQNAF--FTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC--------------CCCHHHHHHHHHHHHHHH--HHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccc--------cccccchHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH
Confidence 98888544444444433222222110000000 00000001 345666666766 5778887777 444333
Q ss_pred HHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh
Q 004720 414 VAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG 493 (733)
Q Consensus 414 l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~ 493 (733)
.... |.... + .-..+.+++++++|...+++.|.+. +...+.+....+. -.
T Consensus 238 ~~~~-----------~~~~~-------------~--~~~~~~l~~el~~~~elle~~pd~~--w~l~~~~~~~~~~--~~ 287 (331)
T 3dss_A 238 GAGS-----------GRCEL-------------S--VEKSTVLQSELESCKELQELEPENK--WCLLTIILLMRAL--DP 287 (331)
T ss_dssp HSSS-----------CGGGC-------------C--HHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHH--CT
T ss_pred Hhcc-----------Ccccc-------------c--hHHHHHHHHHHHHHHHHHhhCcccc--hHHHHHHHHHHhh--cc
Confidence 2111 00000 0 0123457899999999999988652 2222222111111 14
Q ss_pred CCCHHHHHHHHHHHHhhCC
Q 004720 494 LSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 494 l~~~~~A~e~~~~A~~ldp 512 (733)
.+..++..+.+.+..++||
T Consensus 288 ~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 288 LLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp TTTHHHHHHHHHHHHHHCG
T ss_pred cccHHHHHHHHHHHHHhCc
Confidence 6788889999999999999
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.19 E-value=1.8e-06 Score=82.16 Aligned_cols=91 Identities=18% Similarity=0.055 Sum_probs=80.0
Q ss_pred hcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhhCC-ChHHHHHH
Q 004720 452 RSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLI----------DRAQEYITEAEKLEP-NIASAFLK 520 (733)
Q Consensus 452 k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~----------~~A~e~~~~A~~ldp-~~~t~~~~ 520 (733)
+.+.|++|++.|+.++...|.+ +..+.+++.|+..++++ ++|+..|++|++++| +..+.+.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~L 86 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 5567999999999999998855 45789999999999875 599999999999999 88999999
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHHHhccCCChH
Q 004720 521 FKIYLQKN-----------DQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 521 ~ki~l~~g-----------d~e~Al~~l~~~~~~~~~~~~ 549 (733)
..+|...| ++++|+++|++.....+.++.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 99998874 899999999999999776554
No 191
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3.6e-05 Score=69.75 Aligned_cols=101 Identities=13% Similarity=-0.072 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-N---IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~---~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
+..+..++.++.+|...|++++|++.++++++++| + ....+.+..++...|++++|+++++......+.+++.+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 46788899999999999999999999999999999 4 6778889999999999999999999999988778887777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhh
Q 004720 554 AAHEAVACQALSVAVAALSNLLNFY 578 (733)
Q Consensus 554 a~~~a~~~~~~~~a~~aL~~Ll~~~ 578 (733)
.+......|+.+.|+..++..++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7788888999999999999999854
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.18 E-value=5e-06 Score=73.32 Aligned_cols=81 Identities=16% Similarity=-0.001 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAIN 535 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~ 535 (733)
+.|++.|+.++...|.+ ..++.++|.+|...|++++|+++++++++++| ++...+.+..++...|++++|+.
T Consensus 2 ~~a~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CCHHHHHHHHHTTTCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 35889999999987754 35789999999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHhcc
Q 004720 536 QILAMTICL 544 (733)
Q Consensus 536 ~l~~~~~~~ 544 (733)
.+++.....
T Consensus 75 ~~~~al~~~ 83 (115)
T 2kat_A 75 AWESGLAAA 83 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999887764
No 193
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00021 Score=76.74 Aligned_cols=220 Identities=9% Similarity=0.026 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccC-cHHHHHHHHHHHHccCCCCCCCCCcHHHH
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKG-EYESVIKCVRVLREGSFDGGDHHASLPVL 318 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~-~~ekAl~~l~~a~~~~~~~~~~~p~~~~l 318 (733)
.++|+.++++++.+ +|.+ ..+|...+.+....+ .+++++.+++.+... ++.++.++..
T Consensus 70 se~AL~lt~~~L~~---nP~~--------------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~h 128 (349)
T 3q7a_A 70 SERALELTEIIVRM---NPAH--------------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHH 128 (349)
T ss_dssp SHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHH
T ss_pred CHHHHHHHHHHHHh---Cchh--------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHH
Confidence 68899999999999 6533 237888888888788 699999999999886 4677888899
Q ss_pred HHHHHHhc-C-ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccCCc---h-HHHHHHHHH
Q 004720 319 AMKAWLGL-G-RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRCHV---S-AKAAVRMAH 392 (733)
Q Consensus 319 k~~il~~~-g-~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~~~---~-~~~a~~~l~ 392 (733)
+..++... + ++++++..+..++...+..-..|-.-.-++ ..+++.++ . -..++..++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl-----------------~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLY-----------------SHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHH-----------------HHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------HHhccccccchhhHHHHHHHHH
Confidence 99999988 8 899999998888854444433432111111 11111110 0 123444444
Q ss_pred HhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcCC-------HHHHHHHHHH
Q 004720 393 RVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSKD-------YEASAEMFEK 465 (733)
Q Consensus 393 ~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~~-------y~~A~~~y~~ 465 (733)
+.+ +..|.+..+|.. .+....+.++ ++++++++..
T Consensus 192 k~I--~~dp~N~SAW~~------------------------------------R~~lL~~l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 192 EML--RVDGRNNSAWGW------------------------------------RWYLRVSRPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp HHH--HHCTTCHHHHHH------------------------------------HHHHHTTSTTCCCCHHHHHHHHHHHHH
T ss_pred HHH--HhCCCCHHHHHH------------------------------------HHHHHHhccccccchHHHHHHHHHHHH
Confidence 554 345555555533 3444444444 7999999999
Q ss_pred hhccCCCCchhhhhhHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHhhC------C-ChHHHH
Q 004720 466 SMLYLPFDVENRILRAKSFRVLCLCYLGLSL--------------------IDRAQEYITEAEKLE------P-NIASAF 518 (733)
Q Consensus 466 aL~~~~~~~~~~~~~akl~r~la~cyl~l~~--------------------~~~A~e~~~~A~~ld------p-~~~t~~ 518 (733)
++...|.|+. +...+...+.+.|. +....+.+.+..... + +++...
T Consensus 234 aI~~~P~n~S-------aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 234 SIHLIPHNVS-------AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHCTTCHH-------HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHhCCCCHH-------HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 9999997753 34444444544443 344555555443332 3 677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 004720 519 LKFKIYLQKNDQEGAINQILAMTI 542 (733)
Q Consensus 519 ~~~ki~l~~gd~e~Al~~l~~~~~ 542 (733)
.++.+|...|+.++|+++++.+..
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 888899999999999999988864
No 194
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.0003 Score=75.03 Aligned_cols=195 Identities=11% Similarity=0.022 Sum_probs=124.4
Q ss_pred HhccCcHH-HHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCC----------hHHHHHHHHHhhhccCCchHHHHhH
Q 004720 285 HLQKGEYE-SVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGR----------YNEAELELRGMVEIKGIPECIWVSA 353 (733)
Q Consensus 285 yl~~~~~e-kAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~----------~deAi~~l~~~l~~~~~~~~~~ls~ 353 (733)
....|+|+ +|+.+.+.+..+ ++.+..+++.+..++...+. +++++..+..++...|..-.+|..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h- 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH- 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-
T ss_pred HHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH-
Confidence 34556654 899999999987 56777888899998887765 456666666666433333333311
Q ss_pred HHHHHHhchhhhHHHHHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhH
Q 004720 354 VEAYFQAAGTAGAETAKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAA 433 (733)
Q Consensus 354 ~~ly~~~~~~~a~~~lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~ 433 (733)
++.++..+++ +....++.++++++ +.+|.+..+|..
T Consensus 114 ----------------R~wlL~~l~~--~~~~~EL~~~~k~l--~~dprNy~AW~~------------------------ 149 (331)
T 3dss_A 114 ----------------RCWLLSRLPE--PNWARELELCARFL--EADERNFHCWDY------------------------ 149 (331)
T ss_dssp ----------------HHHHHHHCSS--CCHHHHHHHHHHHH--HHCTTCHHHHHH------------------------
T ss_pred ----------------HHHHHhccCc--ccHHHHHHHHHHHH--HhCCCCHHHHHH------------------------
Confidence 1111112221 11234455555555 345544444422
Q ss_pred HHhhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--------------CCHH
Q 004720 434 KERIAMHAVLWNCASILFRSKD-YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--------------SLID 498 (733)
Q Consensus 434 ~~~~~~~~llW~~g~~~~k~~~-y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--------------~~~~ 498 (733)
.+......|. ++++++++..++..+|.|.. ...+++....++ +.++
T Consensus 150 ------------R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S-------AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~ 210 (331)
T 3dss_A 150 ------------RRFVAAQAAVAPAEELAFTDSLITRNFSNYS-------SWHYRSCLLPQLHPQPDSGPQGRLPENVLL 210 (331)
T ss_dssp ------------HHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH-------HHHHHHHHHHHHSCCC------CCCHHHHH
T ss_pred ------------HHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHhhhccccccccccchHHHH
Confidence 4455555666 69999999999999987754 344444444444 5689
Q ss_pred HHHHHHHHHHhhCC-ChHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhccCCC
Q 004720 499 RAQEYITEAEKLEP-NIASAFLKFKIYLQK-----------NDQEGAINQILAMTICLDFT 547 (733)
Q Consensus 499 ~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~-----------gd~e~Al~~l~~~~~~~~~~ 547 (733)
++.+++.+++..+| +...-++.--+.... +..++++++++.+....+.+
T Consensus 211 eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 211 KELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 99999999999999 777775443333333 34689999999998886543
No 195
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.13 E-value=1.1e-05 Score=89.52 Aligned_cols=139 Identities=10% Similarity=-0.047 Sum_probs=104.3
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+......-..+.+.|+|+.|...|+++++..+... ++.. ...+..+.+.+.++..+|++++|+.++.|++.+.
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l-----g~~h-~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~ 359 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL-----PDIN-IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY 359 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC-----CTTS-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC-----Cccc-hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Confidence 334444445556678899999999998887543211 1111 2235677777999999999999999999999987
Q ss_pred hc-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhc
Q 004720 211 FG-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQ 287 (733)
Q Consensus 211 ~~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~ 287 (733)
.. .+..+..++..++|+|..+..+|+ +++|...|++|+++.+...+..+ +....++.+|+.+..+
T Consensus 360 ~~~lg~~Hp~~a~~l~nLa~~~~~~g~---~~eA~~~~~~Al~i~~~~lG~~H---------p~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 360 RIFFPGSHPVRGVQVMKVGKLQLHQGM---FPQAMKNLRLAFDIMRVTHGREH---------SLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCTTS---------HHHHHHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHHHH
Confidence 65 777788899999999999999999 99999999999999887544332 2233466777777654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=2.9e-05 Score=64.44 Aligned_cols=75 Identities=20% Similarity=0.133 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHH
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLS 552 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~ 552 (733)
+..+..+++++.+|...|++++|++.++++++++| ++...+.+..++...|++++|++.++......+.+++...
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 35678899999999999999999999999999999 8889999999999999999999999999988776666443
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.09 E-value=9.1e-06 Score=70.40 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
.+++.|..+++.|+|++|+++|+.++...|.+ ...+.++|.||..+|++++|++.++++++++|
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 34458888889999999999999988887754 34788889999999999999999988888765
No 198
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.07 E-value=0.00042 Score=74.40 Aligned_cols=236 Identities=9% Similarity=0.016 Sum_probs=151.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcC-ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHh
Q 004720 282 SAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLG-RYNEAELELRGMVEIKGIPECIWVSAVEAYFQA 360 (733)
Q Consensus 282 a~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g-~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~ 360 (733)
..+....+..++|+++++.+..+ ++.+..++..+..++...| .+++++..+..++...+..-.+|-.
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h-------- 128 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRM----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH-------- 128 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH--------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH--------
Confidence 33333444567899999999987 5678888899999999999 5999999998888555544444421
Q ss_pred chhhhHHHHHHHHHhhh-ccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHH
Q 004720 361 AGTAGAETAKGVFLGLL-GRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAM 439 (733)
Q Consensus 361 ~~~~a~~~lk~~l~~ll-~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~ 439 (733)
++.++..+ + .. ...++.++++++ +.+|.+..+|..|.-++..+...+.
T Consensus 129 ---------R~wlL~~l~~-~~--~~~EL~~~~k~L--~~dpkNy~AW~~R~wvl~~l~~~~~----------------- 177 (349)
T 3q7a_A 129 ---------RLLLLDRISP-QD--PVSEIEYIHGSL--LPDPKNYHTWAYLHWLYSHFSTLGR----------------- 177 (349)
T ss_dssp ---------HHHHHHHHCC-SC--CHHHHHHHHHHT--SSCTTCHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred ---------HHHHHHHhcC-CC--hHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhccccc-----------------
Confidence 11111111 2 01 146667777887 6788787777555444433211000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHhhCC
Q 004720 440 HAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSL-------IDRAQEYITEAEKLEP 512 (733)
Q Consensus 440 ~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~-------~~~A~e~~~~A~~ldp 512 (733)
.....+.++++++...+..+|.|. .+..+++.+..+++. ++++++++++++.++|
T Consensus 178 -----------~~~~~~~eELe~~~k~I~~dp~N~-------SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 178 -----------ISEAQWGSELDWCNEMLRVDGRNN-------SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP 239 (349)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred -----------cchhhHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC
Confidence 001123589999999999988764 457888888888886 8999999999999999
Q ss_pred -ChHHHHHHHHHHHhcCCH----------------HHHHHHHHHHH-hcc---------CCChHHHHHHHHHHHHcCCHH
Q 004720 513 -NIASAFLKFKIYLQKNDQ----------------EGAINQILAMT-ICL---------DFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 513 -~~~t~~~~~ki~l~~gd~----------------e~Al~~l~~~~-~~~---------~~~~~lL~la~~~a~~~~~~~ 565 (733)
+...-+++-.++...|.. +.....+..+. ... ..++-.|..-+....+.|+..
T Consensus 240 ~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 319 (349)
T 3q7a_A 240 HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD 319 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH
Confidence 777776666666655543 11111111111 111 124456666666667778888
Q ss_pred HHHHHHHHHHhhh
Q 004720 566 VAVAALSNLLNFY 578 (733)
Q Consensus 566 ~a~~aL~~Ll~~~ 578 (733)
.|.++++.|.+.+
T Consensus 320 ~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 320 DAAKVFEKLSSEY 332 (349)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 8888888887644
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=5.5e-05 Score=65.17 Aligned_cols=68 Identities=10% Similarity=-0.049 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 004720 480 RAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFT 547 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~ 547 (733)
.+..+.++|.+|...|++++|++.|+++++++| ++...+.+..++...|++++|++++++.....+.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 467889999999999999999999999999999 89999999999999999999999999999887655
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=2.2e-05 Score=67.97 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 478 ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
|+.+.+++++|.+|...|++++|+++++++++++| ++...+.+..++...|++++|++.+++....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46678899999999999999999999999999999 8999999999999999999999999887765
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=0.00017 Score=82.90 Aligned_cols=178 Identities=8% Similarity=-0.079 Sum_probs=134.0
Q ss_pred hhhHHhccCCcc-hHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHH
Q 004720 138 TGVVWHDLKKYD-LASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLE----------QNLAITLLNRA 206 (733)
Q Consensus 138 ~G~~~~~~g~~~-~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~----------~~~A~~~~~rA 206 (733)
..+...+.|++. .|..++++|++..|+-+ .+..+|..+....|+ +++|+.+++++
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~--------------taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~ 99 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFA--------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 99 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCH--------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhH--------------HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHH
Confidence 333444567776 66899999998876422 345566666667777 99999999999
Q ss_pred HhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHh
Q 004720 207 KCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHL 286 (733)
Q Consensus 207 ~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl 286 (733)
....|.+.. ++++.|-.+...++.+ +++++.++.+++++ ++.+ ..+|...+.+..
T Consensus 100 l~~~pK~y~-------aW~hR~w~l~~l~~~~-~~~el~~~~k~l~~---d~~N--------------~~aW~~R~~~l~ 154 (567)
T 1dce_A 100 LRVNPKSYG-------TWHHRCWLLSRLPEPN-WARELELCARFLEA---DERN--------------FHCWDYRRFVAA 154 (567)
T ss_dssp HHHCTTCHH-------HHHHHHHHHHTCSSCC-HHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHH
T ss_pred HHhCCCCHH-------HHHHHHHHHHHccccc-HHHHHHHHHHHHhh---cccc--------------ccHHHHHHHHHH
Confidence 999887664 5888888888888311 79999999999999 6533 237888888888
Q ss_pred ccC-cHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhc--------------CChHHHHHHHHHhhhccCCchHHHH
Q 004720 287 QKG-EYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGL--------------GRYNEAELELRGMVEIKGIPECIWV 351 (733)
Q Consensus 287 ~~~-~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~--------------g~~deAi~~l~~~l~~~~~~~~~~l 351 (733)
..+ .+++++++++.+.+. ++.+.++++.++.++... +.+++|++.+...+...|.....|.
T Consensus 155 ~l~~~~~~el~~~~~~I~~----~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 155 QAAVAPAEELAFTDSLITR----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp HTCCCHHHHHHHHHTTTTT----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred HcCCChHHHHHHHHHHHHH----CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 888 899999999988875 467778889999988875 4468999999888865565666665
Q ss_pred hHHHHHH
Q 004720 352 SAVEAYF 358 (733)
Q Consensus 352 s~~~ly~ 358 (733)
...-++.
T Consensus 231 y~~~ll~ 237 (567)
T 1dce_A 231 YHRWLLG 237 (567)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 4444443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.92 E-value=1e-05 Score=76.86 Aligned_cols=89 Identities=8% Similarity=-0.016 Sum_probs=71.0
Q ss_pred HccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCC-------CHHHHHHHHHHHHHHHhcCCCCcccc
Q 004720 192 EVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETN-------SLNDALKLMNEALELCEKGLGEARTR 264 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~-------~~e~A~~~l~~Alel~~~~~~~~~~~ 264 (733)
+.+.|++|+..++++..+.|..+.. ++++|.++...++.. .+++|+..|++|+++ +|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea-------~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~---- 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADN-------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKK---- 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTC----
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCc----
Confidence 5788999999999999999997754 677777777665500 046999999999999 6533
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHcc
Q 004720 265 EETTELKGLKFKTLRFISAIHLQKG-----------EYESVIKCVRVLREG 304 (733)
Q Consensus 265 ~~~~~~~el~~~~l~~La~~yl~~~-----------~~ekAl~~l~~a~~~ 304 (733)
..++.+||++|...| +|++|+.+++.+.++
T Consensus 80 ----------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 80 ----------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 238899999998774 799999999999886
No 203
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.89 E-value=0.054 Score=63.25 Aligned_cols=177 Identities=8% Similarity=0.013 Sum_probs=122.0
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHhhccC-----------CCCch----hhhhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 004720 441 AVLWN-CASILFRSKDYEASAEMFEKSMLYL-----------PFDVE----NRILRAKSFRVLCLCYLGLSLIDRAQEYI 504 (733)
Q Consensus 441 ~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~-----------~~~~~----~~~~~akl~r~la~cyl~l~~~~~A~e~~ 504 (733)
..+|- .+....+.|+++.|.+.|+.++... |.+.+ -+...++++...+......|+++.|..++
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35665 6777788999999999999998753 21100 00135667888888888889999999999
Q ss_pred HHHHhhCC-C-hHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 505 TEAEKLEP-N-IASAFLKFKIYLQK-NDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 505 ~~A~~ldp-~-~~t~~~~~ki~l~~-gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
.+|.+..| . .......+.+-.+. ++.+.|.+.|+...+..+.++++...-+.+-...|+.+-|...++..+...+.
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~- 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD- 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS-
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-
Confidence 99988733 2 22222222333333 56899999999998887878998766677777788999999999988884432
Q ss_pred CCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 004720 582 KPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTSE 622 (733)
Q Consensus 582 ~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~~ 622 (733)
+.....++...+++- ...|+.+.+.+..+++.+..++
T Consensus 537 ---~~~~~~lw~~~~~fE-~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 537 ---SHLLKMIFQKVIFFE-SKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp ---TTHHHHHHHHHHHHH-HHTCCSHHHHHHHHHHHHHSTT
T ss_pred ---HHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Confidence 222334333332332 2358888888888888877665
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=0.00034 Score=80.35 Aligned_cols=176 Identities=7% Similarity=-0.054 Sum_probs=128.7
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc----------HHHHHHHHHHHH
Q 004720 233 SKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE----------YESVIKCVRVLR 302 (733)
Q Consensus 233 ~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~----------~ekAl~~l~~a~ 302 (733)
..++. .++|+.++.+++.+ +|.+ ..+|...+.++...+. +++++.+++.+.
T Consensus 40 ~~~~~--~eeal~~~~~~l~~---nP~~--------------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 40 QAGEL--DESVLELTSQILGA---NPDF--------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (567)
T ss_dssp HTTCC--SHHHHHHHHHHHHH---CTTC--------------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCC--CHHHHHHHHHHHHH---Cchh--------------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence 44552 58889999999999 6532 2377777777776665 999999999999
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHhcC--ChHHHHHHHHHhhhccCCchHHHHhHHHHHHHhchhhhHHHHHHHHHhhhccC
Q 004720 303 EGSFDGGDHHASLPVLAMKAWLGLG--RYNEAELELRGMVEIKGIPECIWVSAVEAYFQAAGTAGAETAKGVFLGLLGRC 380 (733)
Q Consensus 303 ~~~~~~~~~~p~~~~lk~~il~~~g--~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~~~~~a~~~lk~~l~~ll~~~ 380 (733)
.. ++.++.+++.+.-++...| ++++|+..+.+++..
T Consensus 101 ~~----~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~-------------------------------------- 138 (567)
T 1dce_A 101 RV----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-------------------------------------- 138 (567)
T ss_dssp HH----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------------------------------------
T ss_pred Hh----CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------------------------------------
Confidence 86 4677888899999999999 458888776655531
Q ss_pred CchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHHHHHHHhcC-CHHHH
Q 004720 381 HVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNCASILFRSK-DYEAS 459 (733)
Q Consensus 381 ~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~g~~~~k~~-~y~~A 459 (733)
+|.+..+|.. .|....+.| .|+++
T Consensus 139 -------------------d~~N~~aW~~------------------------------------R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 139 -------------------DERNFHCWDY------------------------------------RRFVAAQAAVAPAEE 163 (567)
T ss_dssp -------------------CTTCHHHHHH------------------------------------HHHHHHHTCCCHHHH
T ss_pred -------------------ccccccHHHH------------------------------------HHHHHHHcCCChHHH
Confidence 2222222211 344445566 89999
Q ss_pred HHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHhhCC-ChHHHHHHHHHH
Q 004720 460 AEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL--------------SLIDRAQEYITEAEKLEP-NIASAFLKFKIY 524 (733)
Q Consensus 460 ~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l--------------~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~ 524 (733)
++++..+++..|.+. ..+.+++.++.++ +.+++|++++++|+.++| +....++..-++
T Consensus 164 l~~~~~~I~~~p~n~-------saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 164 LAFTDSLITRNFSNY-------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp HHHHHTTTTTTCCCH-------HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCc-------cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 999999999988774 3456666666654 668999999999999999 777777777777
Q ss_pred HhcCCHH
Q 004720 525 LQKNDQE 531 (733)
Q Consensus 525 l~~gd~e 531 (733)
...+..+
T Consensus 237 ~~~~~~~ 243 (567)
T 1dce_A 237 GRAEPHD 243 (567)
T ss_dssp SCCCCCS
T ss_pred hcCCCcc
Confidence 6666633
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.84 E-value=7.8e-05 Score=65.29 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=62.3
Q ss_pred HHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 222 NQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 222 ~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
.-|+.+|..++..++ |..|+.||++|++....+... ...+..++..||.+|.+.|++++|+.+++.+
T Consensus 6 ~dc~~lG~~~~~~~~---y~~A~~W~~~Al~~~~~~~~~----------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 6 EDCFELGKVAYTEAD---YYHTELWMEQALRQLDEGEIS----------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCCC----------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccc---hHHHHHHHHHHHHhhhccCCC----------cccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 459999999999999 999999999999986543210 1124568999999999999999999999999
Q ss_pred HccCCCCCCCCCcH
Q 004720 302 REGSFDGGDHHASL 315 (733)
Q Consensus 302 ~~~~~~~~~~~p~~ 315 (733)
.+. .+.++.+
T Consensus 73 l~l----~P~~~~~ 82 (104)
T 2v5f_A 73 LEL----DPEHQRA 82 (104)
T ss_dssp HHH----CTTCHHH
T ss_pred Hhc----CCCCHHH
Confidence 886 3555554
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.75 E-value=7.7e-05 Score=65.52 Aligned_cols=63 Identities=8% Similarity=0.064 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q 004720 443 LWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP 512 (733)
Q Consensus 443 lW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp 512 (733)
+.+.|..++..|+|++|+.+|+.++...|.+ ...+.++|.||..+|++++|++.++++++++|
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTY-------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3458999999999999999999999987744 45789999999999999999999999999987
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.54 E-value=0.00029 Score=59.72 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHH
Q 004720 485 RVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA-SAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 485 r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~-t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL 551 (733)
.++|.+|...|++++|++.++++++.+| ++. ..+.+..++...|++++|+++++......+.+++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 6789999999999999999999999999 888 899999999999999999999999999877666644
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.50 E-value=0.00055 Score=58.90 Aligned_cols=72 Identities=19% Similarity=0.091 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChH
Q 004720 478 ILRAKSFRVLCLCYLGLSL---IDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTD 549 (733)
Q Consensus 478 ~~~akl~r~la~cyl~l~~---~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~ 549 (733)
++.+.++..+|.++...++ .++|...+++|+++|| ++...+++..++.+.|++++|+..++.+....+.+|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3556788888988876655 7999999999999999 9999999999999999999999999999988765555
No 209
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.36 E-value=0.016 Score=67.76 Aligned_cols=242 Identities=7% Similarity=-0.076 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHH-HHHHHhhhccCCchHHHHhHHHHHHHhch-hhhHHH
Q 004720 291 YESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAE-LELRGMVEIKGIPECIWVSAVEAYFQAAG-TAGAET 368 (733)
Q Consensus 291 ~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi-~~l~~~l~~~~~~~~~~ls~~~ly~~~~~-~~a~~~ 368 (733)
.+++...|+.+... .+.+|..++..++.+...|+.++|. ..+.+.+...|....+|+..+.+....+. +.+-+.
T Consensus 325 ~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 325 KARMTYVYMQAAQH----VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34566778888875 3578889999999999999999997 88888886666677788777877766554 333333
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHhhHHHHHHHHH-H
Q 004720 369 AKGVFLGLLGRCHVSAKAAVRMAHRVAGDEGDGVSEAAVKLRAKAVAELVSDERVLALFVGDAAAKERIAMHAVLWNC-A 447 (733)
Q Consensus 369 lk~~l~~ll~~~~~~~~~a~~~l~~~l~~~~sp~~~~~l~~ka~~l~~l~~~e~v~~~~~g~~~~~~~~~~~~llW~~-g 447 (733)
+.+++..+... ++.+. ...|..+. . ......-...+|-. +
T Consensus 401 yek~l~~l~~~-----------~~~~~--~~~p~~~~----------------~----------~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 401 ILSCIDRIHLD-----------LAALM--EDDPTNES----------------A----------INQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-----------HHHHH--HHSTTCHH----------------H----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------hhhhh--hccCcchh----------------h----------hhhhccchHHHHHHHH
Confidence 33221100000 00000 00010000 0 00001112234553 3
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC-ChHHHHHHHHHHH
Q 004720 448 SILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQEYITEAEKLEP-NIASAFLKFKIYL 525 (733)
Q Consensus 448 ~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l 525 (733)
......|+.+.|...|..|+...|. ...+++...+.--.+.+ ++++|..+|+++++..| ++.-.....+...
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKL------VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGG------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3335678899999999999875221 12355655555555554 58999999999998877 5443333344455
Q ss_pred hcCCHHHHHHHHHHHHhccC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 004720 526 QKNDQEGAINQILAMTICLD---FTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSG 581 (733)
Q Consensus 526 ~~gd~e~Al~~l~~~~~~~~---~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~ 581 (733)
..|+.+.|...++....... ...++...-+.+-.+.|+.+.+.+..+.+.+..+.+
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 67899999999998887654 233566666777778899999988888888876654
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.23 E-value=0.0026 Score=58.37 Aligned_cols=110 Identities=11% Similarity=-0.014 Sum_probs=87.6
Q ss_pred ccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhh
Q 004720 193 VLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKG 272 (733)
Q Consensus 193 ~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~e 272 (733)
.+|+++|+.+++++.+.. .+.. + +|..+...+. .++|+.||++|.+. +.
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a-------~--lg~~y~~g~~---~~~A~~~~~~Aa~~---g~-------------- 56 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFG-------C--LSLVSNSQIN---KQKLFQYLSKACEL---NS-------------- 56 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTH-------H--HHHHTCTTSC---HHHHHHHHHHHHHT---TC--------------
T ss_pred ccCHHHHHHHHHHHHcCC--CHhh-------h--HHHHHHcCCC---HHHHHHHHHHHHcC---CC--------------
Confidence 357889999999999764 3322 2 7776666666 89999999999986 21
Q ss_pred cHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHh----cCChHHHHHHHHHhhh
Q 004720 273 LKFKTLRFISAIHLQ----KGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLG----LGRYNEAELELRGMVE 341 (733)
Q Consensus 273 l~~~~l~~La~~yl~----~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~----~g~~deAi~~l~~~l~ 341 (733)
...+.+|+.+|.. .+++++|+++++.+-+. .+|.+.+..+.++.. .+++++|+..+++...
T Consensus 57 --~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 57 --GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp --HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 1267889999987 67999999999998763 478888999999988 6899999999987764
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.22 E-value=0.0024 Score=58.61 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLG----LSLIDRAQEYITEAEKLEPNIASAFLKF 521 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~----l~~~~~A~e~~~~A~~ldp~~~t~~~~~ 521 (733)
.|..++..+.+++|++||+++.+. ..+..+++++.+|.. .+++++|.+.+++|.+. .++...+.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg 100 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILG 100 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 577788888999999999999764 234678999999999 89999999999998765 4688889999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcc
Q 004720 522 KIYLQ----KNDQEGAINQILAMTICL 544 (733)
Q Consensus 522 ki~l~----~gd~e~Al~~l~~~~~~~ 544 (733)
.+|.. .+|.++|++.+++.....
T Consensus 101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 101 YKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99998 899999999999888763
No 212
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.14 E-value=0.3 Score=54.69 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=88.2
Q ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC-ChHHH
Q 004720 441 AVLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS-LIDRAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 441 ~llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~-~~~~A~e~~~~A~~ldp-~~~t~ 517 (733)
..+|. .+......++.+.|...|..+ . .|.. ...++...|..-...+ ++++|..+++.+++.-| .+...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~------~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV------GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC------CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 35665 444445678899999999999 3 2321 2345555554444444 69999999999999878 55332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYT 579 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~ 579 (733)
..........|+.+.|...++.+. .+..+...-+..-...|+.+.+.+.++.-.+.+.
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 223444567899999999998873 3567777777777788998888887877776554
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.10 E-value=0.024 Score=63.86 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc--cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCChHHHHHHHH
Q 004720 447 ASILFRSKDYEASAEMFEKSML--YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--EPNIASAFLKFK 522 (733)
Q Consensus 447 g~~~~k~~~y~~A~~~y~~aL~--~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--dp~~~t~~~~~k 522 (733)
-..+.+.|++++|.++|+.-.. +.| + ...|..+..+|.+.|++++|.++++++.+. .|+..|.-.+..
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~P-d-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQP-R-------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCC-C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-c-------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4456788999999999988553 333 1 346888889999999999999999998765 568888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc
Q 004720 523 IYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 523 i~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.+.+.|+.++|.+.++.|....
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHhhCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0026 Score=59.77 Aligned_cols=76 Identities=21% Similarity=0.159 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhccC-CCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHH
Q 004720 442 VLWNCASILFRSK---DYEASAEMFEKSMLYL-PFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIAS 516 (733)
Q Consensus 442 llW~~g~~~~k~~---~y~~A~~~y~~aL~~~-~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t 516 (733)
..++.|..+.+.+ ++++++..++..+... | .++..+++++|..|.++|+|++|+++++.+++++| +...
T Consensus 34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p------~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc------cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4556888888888 7889999999998865 2 25678999999999999999999999999999999 7766
Q ss_pred HHHHHHH
Q 004720 517 AFLKFKI 523 (733)
Q Consensus 517 ~~~~~ki 523 (733)
+.+.-.|
T Consensus 108 ~~Lk~~i 114 (152)
T 1pc2_A 108 KELERLI 114 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.76 E-value=0.03 Score=60.20 Aligned_cols=138 Identities=12% Similarity=-0.087 Sum_probs=90.7
Q ss_pred HHHHHHHHc---cCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 004720 185 ARSRTAWEV---LEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEA 261 (733)
Q Consensus 185 ~rA~~a~~~---g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~ 261 (733)
.|+..++.. .++.+|+.++++|++++|+++..+..++..|... ...+.. -.....-+.+++........+
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~----~~~~~~--~~~~~~~l~~a~~a~~a~~~~- 273 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR----HSQHPL--DEKQLAALNTEIDNIVTLPEL- 273 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----HHHSCC--CHHHHHHHHHHHHHHHTCGGG-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hccCCC--chhhHHHHHHHHHHHHhcccC-
Confidence 445555544 4457999999999999999887777677666621 111110 122223334444432211111
Q ss_pred ccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004720 262 RTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGMVE 341 (733)
Q Consensus 262 ~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~l~ 341 (733)
+.-..++..++..++..|++++|+..++.+...+ + +...+.+.++++...|++++|+..+.+.+.
T Consensus 274 ----------~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 ----------NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----M-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1123377778888888899999999999999852 1 233447889999999999999999988884
Q ss_pred ccC
Q 004720 342 IKG 344 (733)
Q Consensus 342 ~~~ 344 (733)
..|
T Consensus 339 L~P 341 (372)
T 3ly7_A 339 LRP 341 (372)
T ss_dssp HSC
T ss_pred cCC
Confidence 433
No 216
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.53 E-value=0.03 Score=53.07 Aligned_cols=114 Identities=11% Similarity=-0.055 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch--hHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCC
Q 004720 182 INIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE--HYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLG 259 (733)
Q Consensus 182 ~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~--~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~ 259 (733)
.|..+....+..|.|+-|+...+.++.+....++ .....+.+++.+|..++..++ |..|...|++|+.+.+.-+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e---yrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE---YRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHhc
Confidence 4556678888999999999999999988754443 235567788899999999999 99999999999998664221
Q ss_pred Cccc---------chhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHH
Q 004720 260 EART---------REETTELKGLKFKTLRFISAIHLQKGEYESVIKCVR 299 (733)
Q Consensus 260 ~~~~---------~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~ 299 (733)
.... .+..... ..-..+-+.++.||.+.++++.|+..++
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccccccccCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 1100 0000000 0012244557888888888888876544
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.43 E-value=0.063 Score=57.69 Aligned_cols=76 Identities=16% Similarity=0.021 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAA 555 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~ 555 (733)
..+.++..++..++..|++++|+..+++|+.++|+......+.+++...|+.++|++.|++...+.+..+ .+.++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~~ 350 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWIE 350 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHHh
Confidence 4567889999999989999999999999999999877888899999999999999999999999987554 455553
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.09 E-value=0.03 Score=47.79 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=54.0
Q ss_pred HHHHHHhcCC---HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChH
Q 004720 446 CASILFRSKD---YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIA 515 (733)
Q Consensus 446 ~g~~~~k~~~---y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~ 515 (733)
.|..++-.++ .++|..+++.+|..+|.+ .+....+|..+.+.|+|++|+++++++++.+| .+.
T Consensus 12 ~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 12 KATTLYYLHKQAMTDEVSLLLEQALQLEPYN-------EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 6777765555 799999999999998865 35678899999999999999999999999999 443
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.06 E-value=0.02 Score=59.46 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHh-c
Q 004720 456 YEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-----SLIDRAQEYITEAEKLEP-N-IASAFLKFKIYLQ-K 527 (733)
Q Consensus 456 y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-----~~~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~-~ 527 (733)
..+|....+++++++|.- .....+..++..|.++ |+.++|.++|++|++++| . +.+.+.....+.. .
T Consensus 179 l~~A~a~lerAleLDP~~-----~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY-----QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH-----HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhCCCc-----ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 478889999999998842 3567899999999996 999999999999999999 4 9999999999888 4
Q ss_pred CCHHHHHHHHHHHHhccCCC-hH
Q 004720 528 NDQEGAINQILAMTICLDFT-TD 549 (733)
Q Consensus 528 gd~e~Al~~l~~~~~~~~~~-~~ 549 (733)
|+.++|.+++++....++.. |+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CCHHHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999987643 55
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.05 E-value=0.037 Score=51.90 Aligned_cols=88 Identities=8% Similarity=-0.044 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhC-C--ChHHHHHHHHHHHhcCCH
Q 004720 457 EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLS---LIDRAQEYITEAEKLE-P--NIASAFLKFKIYLQKNDQ 530 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~---~~~~A~e~~~~A~~ld-p--~~~t~~~~~ki~l~~gd~ 530 (733)
..+.+-|...+...+ ....+.+++|.|+.+.+ ++++|+..+++.++.+ | +..+.|+++-.+.+.||+
T Consensus 15 ~~~~~~y~~e~~~~~-------~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-------VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHTTC-------CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHccCC-------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 445556666654333 23467899999999998 7779999999999998 7 478889999999999999
Q ss_pred HHHHHHHHHHHhccCCChHHH
Q 004720 531 EGAINQILAMTICLDFTTDFL 551 (733)
Q Consensus 531 e~Al~~l~~~~~~~~~~~~lL 551 (733)
++|+++++++.+..+.++...
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999977766633
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.74 E-value=0.053 Score=51.34 Aligned_cols=99 Identities=6% Similarity=-0.110 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---C-Ch-
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLP--FDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE---P-NI- 514 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~--~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld---p-~~- 514 (733)
.+..+....+..|.|+.|+-.....+.... .+...+...+.++..+|..+...++|.+|..+|++|+++- + ++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344688889999999999999999665432 2211235788999999999999999999999999987662 1 11
Q ss_pred ---------------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004720 515 ---------------------ASAFLKFKIYLQKNDQEGAINQILAM 540 (733)
Q Consensus 515 ---------------------~t~~~~~ki~l~~gd~e~Al~~l~~~ 540 (733)
...|..+++++..|++++|+..++.+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 24466788888899999999877655
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.73 E-value=3 Score=46.46 Aligned_cols=166 Identities=8% Similarity=-0.112 Sum_probs=88.2
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhh---------------------------------hhhHHHHHHH
Q 004720 442 VLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENR---------------------------------ILRAKSFRVL 487 (733)
Q Consensus 442 llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~---------------------------------~~~akl~r~l 487 (733)
-+|- .+.-....|+.+.|.+.|+.|+.. |.+..-+ ....+++...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 3455 444456778888888888888877 6542100 1112333344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHH
Q 004720 488 CLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQ-KNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 488 a~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~-~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~ 565 (733)
+......+++++|.+++.+| +..+ ........+.+-.. .++.+.|...++...+..+..|++...-+....+.|+.+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~ 371 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE 371 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH
Confidence 44444456677777777777 3322 22211111222222 335777777777776655556665444455555666666
Q ss_pred HHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 004720 566 VAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILTQETGNESEVLKYMKRAHARTS 621 (733)
Q Consensus 566 ~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~~~~~~~~~~l~~~~~A~~~l~ 621 (733)
-+...++.+. . .. .+....+.+ -...|+.+.+-+.+.++...+.
T Consensus 372 ~aR~l~er~~-----k---~~---~lw~~~~~f-E~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 372 NARALFKRLE-----K---TS---RMWDSMIEY-EFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHSC-----C---BH---HHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----H---HH---HHHHHHHHH-HHHCCCHHHHHHHHHHHHHHhc
Confidence 6655555441 0 11 111111111 1224777777777888887665
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.63 E-value=0.13 Score=57.91 Aligned_cols=159 Identities=12% Similarity=0.032 Sum_probs=103.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCC------CHHHHHHHHHHHHHHHhcCCCC
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETN------SLNDALKLMNEALELCEKGLGE 260 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~------~~e~A~~~l~~Alel~~~~~~~ 260 (733)
-..+.+.|+.++|+.++++....-. .|+... |..+=..+...+... ..+.|...|++-.+- +.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~t-----yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G~-- 101 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGV-QLSQYH-----YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---KV-- 101 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHH-----HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---TC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhH-----HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---CC--
Confidence 4566689999999999999886422 222211 221111111211100 045555555443221 21
Q ss_pred cccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcH--HHHHHHHHHhcCChHHHHHHHHH
Q 004720 261 ARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASL--PVLAMKAWLGLGRYNEAELELRG 338 (733)
Q Consensus 261 ~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~--~~lk~~il~~~g~~deAi~~l~~ 338 (733)
.+. ..++..|..+|...|++++|...++.+.+ ....|.. +-..+..+.+.|+.++|.+.+..
T Consensus 102 ---~Pd--------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 102 ---VPN--------EATFTNGARLAVAKDDPEMAFDMVKQMKA-----FGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp ---CCC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 011 23788899999999999999999999887 3455654 45667888999999999999988
Q ss_pred hhhc-cCCchHHHHhHHHHHHHhch-hhhHHHHHHH
Q 004720 339 MVEI-KGIPECIWVSAVEAYFQAAG-TAGAETAKGV 372 (733)
Q Consensus 339 ~l~~-~~~~~~~~ls~~~ly~~~~~-~~a~~~lk~~ 372 (733)
|... .......|..++..|...+. +.|++.++++
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 8743 33445557778888888877 7777777755
No 224
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.58 E-value=0.2 Score=54.41 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=89.2
Q ss_pred HHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCch
Q 004720 136 FKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFE 215 (733)
Q Consensus 136 ~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~ 215 (733)
.+.|..|++.|+|..|..++.+....+.. .++...+++++......+...||+.++...+.+|......-+.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~--------~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKK--------LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 38899999999999999999888877632 1234567899999999999999999999999999988654322
Q ss_pred hHHHHHHHHHHHhHHHH-hcCCCCCHHHHHHHHHHHHHHHh
Q 004720 216 HYKSLANQYLTFAKSAL-SKNETNSLNDALKLMNEALELCE 255 (733)
Q Consensus 216 ~~~~La~~~~~~G~~~~-~~~~~~~~e~A~~~l~~Alel~~ 255 (733)
.....+.+...-|+.++ ..++ |.+|...|-++++-..
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rd---yk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERD---FKTAFSYFYEAFEGFD 212 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhHHHHHhccC---HHHHHHHHHHHHhccc
Confidence 23457778888899999 8999 9999999998886544
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.57 E-value=0.87 Score=47.17 Aligned_cols=199 Identities=9% Similarity=-0.026 Sum_probs=119.2
Q ss_pred HHhHHHHHHHHHHhhc---CCCCCChHHH-HHHHHHHHhhhHHhccC--------------CcchHHHHHHHHHHHHHHH
Q 004720 104 VANLRHVAADLLSLAA---DVSGIPSPAI-KSASFYFKTGVVWHDLK--------------KYDLASGCFEKATEIVSKL 165 (733)
Q Consensus 104 ~a~~R~~a~~ll~~~~---~~~~~~~~~~-~~~~~~~k~G~~~~~~g--------------~~~~A~~~lekA~e~~~~~ 165 (733)
...+|...+.-|-+-. ..+|.+..+. ..++.+..-|++|.... ++..|...|.+|.++..+.
T Consensus 41 ~elv~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~ra 120 (301)
T 3u64_A 41 LDLVAQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3456666555444433 2345555554 34477777788887653 3556677777777665432
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHH-HHhHHHH-hcCCCCC----
Q 004720 166 DISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYL-TFAKSAL-SKNETNS---- 239 (733)
Q Consensus 166 ~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~-~~G~~~~-~~~~~~~---- 239 (733)
.-.+..+ -.-.+.+|+...=...+.+ ..+..+ + ..|| -++.... ....+++
T Consensus 121 L~~~~~~--------------~~~~~~~~~~~~~~~~l~~---~~~~dv---e---~L~W~ai~~ss~a~~~~gg~~Al~ 177 (301)
T 3u64_A 121 LETAYPG--------------FTREVFSGDEQRLHKVLSR---CTRVDV---G---TLYWVGTGYVAAFALTPLGSALPD 177 (301)
T ss_dssp HHHHSTT--------------HHHHHTSSCHHHHHHHHTT---CCGGGH---H---HHHHHHHHHHHHHTTSCTTSCCHH
T ss_pred HHHhCcc--------------HHHHHHhcchhhHHHHHHH---cCcccc---H---HHHHHHHHHHHHHhcCCCChHHHH
Confidence 2110000 0013344443221111211 222222 1 1233 2333322 2222222
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHccCCCCCCC-C
Q 004720 240 -LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQK-----GEYESVIKCVRVLREGSFDGGDH-H 312 (733)
Q Consensus 240 -~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~-----~~~ekAl~~l~~a~~~~~~~~~~-~ 312 (733)
...|...+++|+++ +|.. .....+..|+..|... |+.++|..+++.+.+++ +. +
T Consensus 178 ~l~~A~a~lerAleL---DP~~------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln----P~~~ 238 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSY------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC----SAHD 238 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTH------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC----CTTC
T ss_pred hHHHHHHHHHHHHHh---CCCc------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC----CCCC
Confidence 67888899999999 6532 2345899999999885 89999999999999984 44 4
Q ss_pred CcHHHHHHHHHHhc-CChHHHHHHHHHhhhccC
Q 004720 313 ASLPVLAMKAWLGL-GRYNEAELELRGMVEIKG 344 (733)
Q Consensus 313 p~~~~lk~~il~~~-g~~deAi~~l~~~l~~~~ 344 (733)
+...+..++.+... |+++++...+.+.+..++
T Consensus 239 id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 239 PDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 78889999999885 999999999998886544
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.70 E-value=0.2 Score=45.33 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCHHH---HHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHH
Q 004720 442 VLWNCASILFRSKDYEA---SAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASA 517 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~---A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~ 517 (733)
..++.|..+.+.++-.+ +|..++..+.-.. + ..+-.+.+.+|..|.++|+|++|..+++..++++| +.-..
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p---~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--K---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--c---chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 34567777777777766 8888888776431 1 25668899999999999999999999999999999 76655
Q ss_pred HHHHH
Q 004720 518 FLKFK 522 (733)
Q Consensus 518 ~~~~k 522 (733)
-+.-.
T Consensus 112 ~Lk~~ 116 (126)
T 1nzn_A 112 ELERL 116 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.99 E-value=0.72 Score=42.47 Aligned_cols=75 Identities=19% Similarity=0.130 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCH---HHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHH
Q 004720 443 LWNCASILFRSKDY---EASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAF 518 (733)
Q Consensus 443 lW~~g~~~~k~~~y---~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~ 518 (733)
.++.+..+.+.++- .+++..++..+.-.|. .+-.+++.+|..|.++|+|++|..+++..++.+| +.-..-
T Consensus 42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44556566565544 5788888887764442 3457899999999999999999999999999999 765554
Q ss_pred HHHHH
Q 004720 519 LKFKI 523 (733)
Q Consensus 519 ~~~ki 523 (733)
+.-.|
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.90 E-value=0.85 Score=42.45 Aligned_cols=99 Identities=11% Similarity=0.005 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhccCCCCc-hhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHH
Q 004720 457 EASAEMFEKSMLYLPFDV-ENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAI 534 (733)
Q Consensus 457 ~~A~~~y~~aL~~~~~~~-~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al 534 (733)
+.-++.|+.|..-.|... ..+...+.+..+.|.- ..+++.++|.++|+.++.+.. -.+.....++.-+++|+.+.|.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 677889999987666432 1123455555666643 677999999999999988866 4445555667777899999999
Q ss_pred HHHHHHHhccCCChHHHHHHHH
Q 004720 535 NQILAMTICLDFTTDFLSLAAH 556 (733)
Q Consensus 535 ~~l~~~~~~~~~~~~lL~la~~ 556 (733)
+.+.+.....+....+|..|++
T Consensus 115 kILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 115 QLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHH
Confidence 9998888877766677776654
No 229
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.75 Score=50.44 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=82.1
Q ss_pred HHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCc
Q 004720 135 YFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLF 214 (733)
Q Consensus 135 ~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~ 214 (733)
..+.|.-|++.|+++.|.++|.++-+.+.. . + ..++++....+++...||+..+...+.|+..+....+
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~--~-----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIS----T--G-----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTC----C--C-----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----h--H-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence 456788899999999999999998876521 0 1 1267888888999999999999999999998865533
Q ss_pred hhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 215 EHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 215 ~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
+ ...........|..++..++ |.+|.+.|-.++..
T Consensus 203 d-~~~~~~lk~~~gl~~l~~r~---f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 D-WERRNRYKTYYGIHCLAVRN---FKEAAKLLVDSLAT 237 (429)
T ss_dssp C-THHHHHHHHHHHHGGGGTSC---HHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHhcc
Confidence 2 23345566677999999999 99999999888765
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.55 E-value=0.93 Score=41.21 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=55.2
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHH
Q 004720 444 WNCASILFRSK---DYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFL 519 (733)
Q Consensus 444 W~~g~~~~k~~---~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~ 519 (733)
++.|..+.+.+ +..+++..++..+...| ..+-.+++.+|..|.++|+|++|..+++..++++| +.-..-+
T Consensus 44 F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~------~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 44 FNYAWGLIKSTDVNDERLGVKILTDIYKEAE------SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc------chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34444444444 45678999888776543 24567899999999999999999999999999999 7665554
Q ss_pred HHHH
Q 004720 520 KFKI 523 (733)
Q Consensus 520 ~~ki 523 (733)
.-.|
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 231
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.48 E-value=8.5 Score=41.52 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=118.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCC-C---h-HHHH
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGL-SLIDRAQEYITEAEKLEP-N---I-ASAF 518 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l-~~~~~A~e~~~~A~~ldp-~---~-~t~~ 518 (733)
..|..+.+.|++++-.+.+.....|.+.-.. .-.+|+-|++.-.+... +..+.-.+.|.++++-.. + . .+..
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISK--AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999887765442 57899999999988875 567777888888776432 2 2 2223
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhcc---CCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHH
Q 004720 519 --LKFKIYLQKNDQEGAINQILAMTICL---DFTTDFLSLA---AHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVV 590 (733)
Q Consensus 519 --~~~ki~l~~gd~e~Al~~l~~~~~~~---~~~~~lL~la---~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~ 590 (733)
.+.++|...|++.+|++.+..+..-. |...-++... .+.....+|...+..++..-...... .+.|..+..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i~a 180 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHHHH
Confidence 67999999999999999998887533 2233333333 44566789999998888766553221 112345778
Q ss_pred HHHHHHHHHHh-hcCChhHHHHHHHHHH
Q 004720 591 VLRTIVTILTQ-ETGNESEVLKYMKRAH 617 (733)
Q Consensus 591 ~lR~li~l~~~-~~~~~~~~l~~~~~A~ 617 (733)
.+|+.-.++.- ..++-.+..++|-.|+
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 88877777755 5556554444444443
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.07 E-value=0.96 Score=49.86 Aligned_cols=113 Identities=14% Similarity=-0.008 Sum_probs=83.0
Q ss_pred HHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 131 SASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLDISRISDSDERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 131 ~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~~~~~~~~~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
.+....+.++.+.+.|++..|...+.... ++ +.. ..++...+++++.+++.+...||+..|...+.|+....
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~--~E---t~~---~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQ--VE---TYG---SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HH---HCS---SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH--HH---HHh---cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 34455677888888899888888776543 11 111 12234457889999999999999999999999997544
Q ss_pred hcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004720 211 FGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELC 254 (733)
Q Consensus 211 ~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~ 254 (733)
...++........+...|+.+...++ |.+|.+.|-++++..
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~---y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKRE---YLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcc
Confidence 33333334455566678999999999 999999999999863
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.54 E-value=1.1 Score=40.50 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhCCCHHH---HHHHHHHHHhhC-C--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 481 AKSFRVLCLCYLGLSLIDR---AQEYITEAEKLE-P--NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~---A~e~~~~A~~ld-p--~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
....+++|.|+++.++... ++..+++..+.+ | .-...|+++--+.+.|++++|+++++.+....+.++....|
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4678999999999987666 888888887776 5 45677889999999999999999999999998877775444
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.82 E-value=3.1 Score=42.37 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=82.6
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHH--HHHHHcCCHHH
Q 004720 490 CYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAA--HEAVACQALSV 566 (733)
Q Consensus 490 cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~--~~a~~~~~~~~ 566 (733)
-.++-|+++.|++.+...++-+| +...+-.+|+++...||+++|.++++.+.++ +|+....+. ..++.+....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~~R- 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR- 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHHH-
Confidence 46788999999999999999999 9999999999999999999999999999998 555333331 1222222222
Q ss_pred HHHHHHHHHhhhcCCC-C-CchhHHHHHHHHHHHH-HhhcCChhHHHHHHHHHHHHhhhc
Q 004720 567 AVAALSNLLNFYTSGK-P-MPTKEVVVLRTIVTIL-TQETGNESEVLKYMKRAHARTSEI 623 (733)
Q Consensus 567 a~~aL~~Ll~~~~~~~-~-~~~~~~~~lR~li~l~-~~~~~~~~~~l~~~~~A~~~l~~~ 623 (733)
..++. ... | ++.....-+..++..+ ....|+.+..-..-.+|++..+..
T Consensus 82 -----~~vfa---G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 82 -----KDFAQ---GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp -----HHHTT---SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -----HHHHc---CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 22232 111 1 1111223444566666 444688888888888888765443
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.59 E-value=18 Score=39.56 Aligned_cols=96 Identities=9% Similarity=-0.102 Sum_probs=72.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh-ccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCCC--hHHH-
Q 004720 446 CASILFRSKDYEASAEMFEKSM-LYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK----LEPN--IASA- 517 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL-~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~----ldp~--~~t~- 517 (733)
.+..++..|+|.+|.+...... +.+.... ......++-.....|+..+++.+|..+++++.. ..+. ....
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~--~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSME--MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 6889999999999999999865 3333322 246677777888899999999999999998742 2222 2333
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 518 -FLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 518 -~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
..+.+++...+++.+|-++|..+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35788888999999999988777554
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.06 E-value=5.8 Score=37.84 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=72.3
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004720 443 LWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKF 521 (733)
Q Consensus 443 lW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ 521 (733)
.|+ .|..+..+|+++.|.+.|..+-.+ -.+..-|.-.|+.++-....+.|..-.. ....|
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---------------~~L~~Ly~~tg~~e~L~kla~iA~~~g~----~n~af 96 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQHSF---------------DKLSFLYLVTGDVNKLSKMQNIAQTRED----FGSML 96 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCH---------------HHHHHHHHHHTCHHHHHHHHHHHHHTTC----HHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCCH---------------HHHHHHHHHhCCHHHHHHHHHHHHHCcc----HHHHH
Confidence 566 788899999999999999987432 3344456666776665555554433322 23457
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNL 574 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~L 574 (733)
.+++..||++++++.|...... ..|+..|.-.|-.+++...++.+
T Consensus 97 ~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHHHHh
Confidence 8888999999999988555443 45677777888888887665544
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.00 E-value=6 Score=42.50 Aligned_cols=98 Identities=6% Similarity=-0.052 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCC----Cc--hhh---------hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPF----DV--ENR---------ILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL 510 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~----~~--~~~---------~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l 510 (733)
.|......|+.+.|++.+..++..+.. +. ..+ .....+...++..++.+|++.+|+..+..+...
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 566666789999999999999976521 10 000 122334556778889999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 004720 511 EP-NIASAFLKFKIYLQKNDQEGAINQILAMTIC 543 (733)
Q Consensus 511 dp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~ 543 (733)
+| +-..+..+-.++.+.|+..+|++.|+.+...
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 7667777788889999999999999888764
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.37 E-value=4 Score=37.51 Aligned_cols=74 Identities=7% Similarity=-0.120 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhCCCH---HHHHHHHHHHHhhCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 480 RAKSFRVLCLCYLGLSLI---DRAQEYITEAEKLEP-N-IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~~---~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
..+..++.|.|.++..+. .+++..+++..+.+| . -.+.|+++--+.+.||+++|.++.+.+....+.+.....|
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 346789999999998754 578889998888888 3 4677889999999999999999999999998887775544
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.88 E-value=2.4 Score=38.47 Aligned_cols=74 Identities=7% Similarity=-0.146 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 480 RAKSFRVLCLCYLGLSL---IDRAQEYITEAEKLEP-N-IASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 480 ~akl~r~la~cyl~l~~---~~~A~e~~~~A~~ldp-~-~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
.....++.|.|.++.++ ..+++..+++.++.+| . -.+.|+++--+.+.||+++|.++++.+....+.+...+.|
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34678899999988875 4578899999888888 3 5678889999999999999999999999998877775544
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=86.04 E-value=4.5 Score=38.30 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH--hh--CCCh-------
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE--KL--EPNI------- 514 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~--~l--dp~~------- 514 (733)
.+-..|=.|.|..|+-... . .+++...+.-++||-++++|.+|+..+++.+ +. ||++
T Consensus 39 ~~I~LyyngEY~R~Lf~L~------~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLH------K------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM 106 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHH------T------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred hhhhhhhcchHhHHHHHHH------h------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence 5667788888887764332 1 2456666777999999999999999999887 33 3322
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHH
Q 004720 515 --------ASAFLKFKIYLQKNDQEGAINQIL 538 (733)
Q Consensus 515 --------~t~~~~~ki~l~~gd~e~Al~~l~ 538 (733)
+-..+++++..+.|+.++|+.++.
T Consensus 107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 223356777777777777777663
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.85 E-value=4 Score=43.91 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=77.6
Q ss_pred HhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc-----cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 004720 227 FAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR-----TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVL 301 (733)
Q Consensus 227 ~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~-----~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a 301 (733)
-|......++ .+.|...|++|+.+-..+..... ....-..+.+.+..++..++.+++..|++++|+..+..+
T Consensus 121 ~~~~~~~~~~---~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 121 AGVHAAAAGR---FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCC---HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445556677 88999999999998654432211 011223345667778888999999999999999888777
Q ss_pred HccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 302 REGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 302 ~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
... .+.+-..+...+++++..|+..+|+..+...
T Consensus 198 ~~~----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 198 TFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 764 3455567799999999999999999997643
No 242
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.82 E-value=4.9 Score=43.81 Aligned_cols=96 Identities=7% Similarity=-0.072 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CCChHHH--
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL-----EPNIASA-- 517 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l-----dp~~~t~-- 517 (733)
..|..+++.|+|+.|++.|........... .+..++.....+++..+++..+..+++++..+ ||.....
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTG----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCC----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 379999999999999999999876554332 45678888999999999999999999998655 2223322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 518 FLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 518 ~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
.....+++..+++..|.+.+-......
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 345666778999999988886654433
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=83.37 E-value=10 Score=43.80 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=60.7
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHH
Q 004720 443 LWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKF 521 (733)
Q Consensus 443 lW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ 521 (733)
.|. .|..+.+.++++.|++.|..+-. +..+...|...++.++..+..+.+..... . ...+
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d---------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-~---~~A~ 743 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHD---------------LESLFLLHSSFNNKEGLVTLAKDAETTGK-F---NLAF 743 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTC---------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-H---HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccC---------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-h---HHHH
Confidence 454 67888888999999888887632 23445556667777766666655544322 1 1235
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHH
Q 004720 522 KIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALS 565 (733)
Q Consensus 522 ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~ 565 (733)
.+|++.|++++|++.+..+... ..|+..|...+..+
T Consensus 744 ~~~~~~g~~~~a~~~~~~~~~~--------~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 744 NAYWIAGDIQGAKDLLIKSQRF--------SEAAFLGSTYGLGD 779 (814)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCCH
T ss_pred HHHHHcCCHHHHHHHHHHcCCh--------HHHHHHHHHhCCCh
Confidence 5666788888888887555332 45566666655444
No 244
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=83.17 E-value=5.8 Score=47.90 Aligned_cols=119 Identities=7% Similarity=-0.006 Sum_probs=87.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc-----cCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCChHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSML-----YLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKL--EPNIASAF 518 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~-----~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~l--dp~~~t~~ 518 (733)
.-+.+.+.|+.++|.+.|..--. ..| ....|.-+...|.+.|++++|.++++++.+. .|+..|+-
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~P--------dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL--------TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC--------CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 55778999999999999965321 222 2346888999999999999999999998665 57999998
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004720 519 LKFKIYLQKND-QEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLL 575 (733)
Q Consensus 519 ~~~ki~l~~gd-~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll 575 (733)
.+...+.+.|+ .++|.+.++.|... +..||.+.-...+ .....+.++.++..+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll--~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLL--SEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCC--CHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhccccc--ChhhHHHHHHHHHHhC
Confidence 88889999887 57899999999875 5678844433221 1112444555555443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=78.76 E-value=40 Score=39.47 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
+|--++.-+.+.|+|+-|++.-++|...-|.+- +....|+.||+.+|+|+.|.-.++-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF-------~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSF-------ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh-------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444478888899999999999999999888664 45799999999999999999888743
No 246
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=78.45 E-value=9.2 Score=34.33 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC-H--HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQA-L--SVAVAALSNLLNFYTSGKPMPTKEVVVLRTIV 596 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~-~--~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li 596 (733)
..+=|...||.++|++|++.+. .+.+.+.++..++..+.+.++ . +.+.+-|..|.. .+--.+.+....+..++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~-~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~---~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK---SSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---TTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH---CCCcCHHHHHHHHHHHH
Confidence 3555667799999999999985 457788999999999999764 2 223333444443 22222455666655555
Q ss_pred HHHHhhcCChhHHHHHHHHHH
Q 004720 597 TILTQETGNESEVLKYMKRAH 617 (733)
Q Consensus 597 ~l~~~~~~~~~~~l~~~~~A~ 617 (733)
..+.+..-|.+.+-+++.+-.
T Consensus 89 ~~l~Dl~lDiP~a~~~l~~~v 109 (129)
T 2nsz_A 89 NEIPDINLDVPHSYSVLERFV 109 (129)
T ss_dssp HHHHHHHHHSTTHHHHHHHHH
T ss_pred hhChHhhcCccchHHHHHHHH
Confidence 555444333333444443333
No 247
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=77.74 E-value=9.4 Score=35.39 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 004720 520 KFKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALS---VAVAALSNLLNFYTSGKPMPTKEVVVLRTIV 596 (733)
Q Consensus 520 ~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~---~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li 596 (733)
..+=|...||.++|++|++.+. .+.+.+.++..++..+++.++.. .+..-|..|.. .+--.+.++...+..++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~-~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~---~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK---SSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---TTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH---CCCcCHHHHHHHHHHHH
Confidence 3556667799999999999985 35778899999999999975322 23333344433 23222556666665555
Q ss_pred HHHHhhcCChhHHHHHHH
Q 004720 597 TILTQETGNESEVLKYMK 614 (733)
Q Consensus 597 ~l~~~~~~~~~~~l~~~~ 614 (733)
..+.+..-|.+.+-+++.
T Consensus 91 ~~ldDl~lDiP~A~~~la 108 (152)
T 2ion_A 91 NEIPDINLDVPHSYSVLE 108 (152)
T ss_dssp HHHHHHHHHSTTHHHHHH
T ss_pred HhChHhccCccchHHHHH
Confidence 555444333333333333
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.63 E-value=30 Score=32.14 Aligned_cols=67 Identities=7% Similarity=-0.058 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChH
Q 004720 442 VLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIA 515 (733)
Q Consensus 442 llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~ 515 (733)
-+|-.=..+...+|.++|-+.|+.++.. . ...||+....|.--+..|++++|..++.+|+.+.|-+.
T Consensus 62 ~LWIrYA~~~ei~D~d~aR~vy~~a~~~---h----KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 62 RIQVRFAELKAIQEPDDARDYFQMARAN---C----KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHHHHHHHHCGGGCHHHHHHHHHH---C----TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH---h----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3444333445669999999999999886 2 24599999999999999999999999999999988443
No 249
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.67 E-value=18 Score=40.35 Aligned_cols=148 Identities=17% Similarity=0.120 Sum_probs=87.8
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-Ch-HH--
Q 004720 442 VLWN-CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NI-AS-- 516 (733)
Q Consensus 442 llW~-~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~-~t-- 516 (733)
.+|| .-..|.+.+.|+.|..+..++- +|....+....+.-++.+|..+.-.++|.+|.+++..|++..| +. ..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf 309 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence 3445 4566788899999999999985 4433111245678889999999999999999999999998876 32 11
Q ss_pred --HHHHHHH--HHhcCCHHH-HHHHHHHHHhccCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhH-
Q 004720 517 --AFLKFKI--YLQKNDQEG-AINQILAMTICLDFTTDFL--SLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKE- 588 (733)
Q Consensus 517 --~~~~~ki--~l~~gd~e~-Al~~l~~~~~~~~~~~~lL--~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~- 588 (733)
..+.+-| -+..|+... ++ -...... ..| +.....|.+.|+......+++.--.....|.. ..-+
T Consensus 310 r~~a~K~lI~V~LLlG~iP~r~l------f~q~~l~-~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgt-y~LI~ 381 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPELSF------FHQSNMQ-KSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDT-YQLCV 381 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH------HTTTSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC-THHHH
T ss_pred HHHHHHHHHhHHhhcCCCCChHH------hhchhHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCCh-hHHHH
Confidence 1122222 222455421 11 0111100 111 23345667889998887777655544444422 2211
Q ss_pred ---HHHHHHHHHHH
Q 004720 589 ---VVVLRTIVTIL 599 (733)
Q Consensus 589 ---~~~lR~li~l~ 599 (733)
-.++|+.|+.+
T Consensus 382 rLr~~vir~~irki 395 (523)
T 4b4t_S 382 RLRSNVIKTGIRII 395 (523)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH
Confidence 24555555554
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=76.64 E-value=17 Score=43.97 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCChHHHHH
Q 004720 479 LRAKSFRVLCLCYLGLSLIDRAQEYITEAEK-----LEPNIASAFLKFKIYLQKNDQEGAINQILAMTICLDFTTDFLSL 553 (733)
Q Consensus 479 ~~akl~r~la~cyl~l~~~~~A~e~~~~A~~-----ldp~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~l 553 (733)
..-..|..+..+|.+.|++++|.+.+.++.+ +.|++.|+-.+-.-+.+.|+.++|++.++.|... ...||...-
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 3445688899999999999999999987643 5789999999999999999999999999999864 556764333
Q ss_pred HHHH-HH-HcCC-HHHHHHHHHHHHh
Q 004720 554 AAHE-AV-ACQA-LSVAVAALSNLLN 576 (733)
Q Consensus 554 a~~~-a~-~~~~-~~~a~~aL~~Ll~ 576 (733)
.+.+ +. +.|. .+.|...|+.+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3222 12 2344 4566677776665
No 251
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=73.91 E-value=14 Score=42.58 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAE 508 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~ 508 (733)
.+.+.|++++|.+..+.. +.....+++|..+++.++++.|+++|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~------------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE------------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhh------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 456788888888875321 123567889999999999999999988653
No 252
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=73.49 E-value=6.1 Score=33.26 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLD 166 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~ 166 (733)
+-.+-+.-.-+..+++.|+|+.|++|.++|+.++..+.
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAm 49 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM 49 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44677888889999999999999999999999987544
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=73.38 E-value=7.7 Score=45.50 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 004720 481 AKSFRVLCLCYLGLSLIDRAQEYITEAEKLEP-NIASAFLKFKIYLQKNDQEGAINQILAMTICL 544 (733)
Q Consensus 481 akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp-~~~t~~~~~ki~l~~gd~e~Al~~l~~~~~~~ 544 (733)
+.++.--+.-.++.|+|+-|.++.++|..+.| +..+-+.+.++|+..||+|.|+=.+ -+|+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL---NScP 398 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI---NSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH---HHSC
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH---hcCC
Confidence 34555566667788999999999999999999 8999999999999999999998554 4554
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.47 E-value=1e+02 Score=37.77 Aligned_cols=56 Identities=16% Similarity=-0.033 Sum_probs=42.2
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITE 506 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~ 506 (733)
.+.+.|-|+.++++-+.|+...+.+.. .....++.++=.+++.+++|++|-..+..
T Consensus 908 LFe~~~~~~~vi~fa~lAi~~~~~~~~--~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 908 KLFEESAYIDALEFSLLADASKETDDE--DLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHCCSCCH--HHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhccCCCh--hhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 445678899999999999876654432 24556788888899999999988877753
No 255
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=69.14 E-value=67 Score=30.40 Aligned_cols=99 Identities=9% Similarity=0.039 Sum_probs=57.7
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 004720 449 ILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLEPNIASAFLKFKIYLQKN 528 (733)
Q Consensus 449 ~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ldp~~~t~~~~~ki~l~~g 528 (733)
.+.+.|+++.|.+..+.. +.....+.+|...+..|+++-|+++|.++-.. .. +..+|.-.|
T Consensus 14 LAL~lg~l~~A~e~a~~l------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----~~---L~~Ly~~tg 74 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----DK---LSFLYLVTG 74 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----HH---HHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----HH---HHHHHHHhC
Confidence 355889999998886643 12346788999999999999999999865332 22 233444466
Q ss_pred CHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 004720 529 DQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAAL 571 (733)
Q Consensus 529 d~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL 571 (733)
|.++=.+ +.++....+ + ..++.+.+...|+.+..+..|
T Consensus 75 ~~e~L~k-la~iA~~~g---~-~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 75 DVNKLSK-MQNIAQTRE---D-FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp CHHHHHH-HHHHHHHTT---C-HHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHCc---c-HHHHHHHHHHcCCHHHHHHHH
Confidence 6653222 222222211 1 234445555666666654433
No 256
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=58.12 E-value=38 Score=31.66 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=54.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQALSVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVTILT 600 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~~~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~l~~ 600 (733)
.+=|...||.++|++|++.+. ++.+.|.++..++..+++.++.+. .....|+..+..+.-.+.++...+..++..+.
T Consensus 17 i~EYf~~~D~~Ea~~~l~eL~-~p~~~~~~V~~~I~~aldrk~~er--e~~s~LL~~L~~~~ls~~~i~~Gf~~lle~ld 93 (165)
T 2rg8_A 17 IQEYFEHGDTNEVAEMLRDLN-LGEMKSGVPVLAVSLALEGKASHR--EMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLP 93 (165)
T ss_dssp HHHHHHHCCHHHHHHHHHHHT-CSGGGGHHHHHHHHHHHTSCHHHH--HHHHHHHHHHBTTTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhC-CcccHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCh
Confidence 445666789999999999976 355788999999999998765432 23333333222232235566666665555554
Q ss_pred hhcCChhHHHHHH
Q 004720 601 QETGNESEVLKYM 613 (733)
Q Consensus 601 ~~~~~~~~~l~~~ 613 (733)
+..-|.+.+-+++
T Consensus 94 Dl~iDiP~a~~~l 106 (165)
T 2rg8_A 94 ELALDTPRAPQLV 106 (165)
T ss_dssp HHHHHCTTHHHHH
T ss_pred hhcccccchHHHH
Confidence 4433333444433
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=56.96 E-value=1.9e+02 Score=30.19 Aligned_cols=78 Identities=21% Similarity=0.106 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHH-HHHHHhch-hhhHHHHHHHHHhhhccCCchHHHHH
Q 004720 311 HHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAV-EAYFQAAG-TAGAETAKGVFLGLLGRCHVSAKAAV 388 (733)
Q Consensus 311 ~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~-~ly~~~~~-~~a~~~lk~~l~~ll~~~~~~~~~a~ 388 (733)
-||....+-+..+.+.+++.+|..++. +.. +.....|.+.. +.+..... +..+-..+.||..+....- ..|.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~-~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~---~~A~ 207 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--LGT-KESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANV---RAAN 207 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--TSC-TTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCH---HHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--hcC-CchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCH---HHHH
Confidence 477778889999999999999999974 222 22223443433 43333332 5667777777666554433 3444
Q ss_pred HHHHHh
Q 004720 389 RMAHRV 394 (733)
Q Consensus 389 ~~l~~~ 394 (733)
.+++.|
T Consensus 208 ~~~~~f 213 (336)
T 3lpz_A 208 TAYRIF 213 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=54.99 E-value=45 Score=36.96 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CChHH
Q 004720 438 AMHAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEKLE-PNIAS 516 (733)
Q Consensus 438 ~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ld-p~~~t 516 (733)
..|..+=..|..+--...++.|..||.+|....|.+. ..|.-+|..+...|+.-.|.-+|-+++... |.+.+
T Consensus 150 ~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G-------~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG-------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC-------chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhH
Confidence 4566666789998777789999999999999988553 568999999999999999999999998775 45554
Q ss_pred HHHH
Q 004720 517 AFLK 520 (733)
Q Consensus 517 ~~~~ 520 (733)
.-++
T Consensus 223 ~~nL 226 (497)
T 1ya0_A 223 STNL 226 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.90 E-value=66 Score=39.48 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCc--h---h----------hhhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004720 444 WNCASILFRSKDYEASAEMFEKSML-YLPFDV--E---N----------RILRAKSFRVLCLCYLGLSLIDRAQEYITEA 507 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~-~~~~~~--~---~----------~~~~akl~r~la~cyl~l~~~~~A~e~~~~A 507 (733)
+-.|..++..|+|++|.++|+++-. +...+. . . ....+..|......+.+.+.++.+++....|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3489999999999999999998742 211110 0 0 0123456778888899999999999999999
Q ss_pred HhhCC-C---hHH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004720 508 EKLEP-N---IAS--AFLKFKIYLQKNDQEGAINQILAMT 541 (733)
Q Consensus 508 ~~ldp-~---~~t--~~~~~ki~l~~gd~e~Al~~l~~~~ 541 (733)
++..+ + ..+ ....|+.++..|++++|..++-.+.
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 87754 2 232 3457999999999999988775553
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=52.08 E-value=1.1e+02 Score=31.10 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 004720 437 IAMHAVLWNCASILFRSKDYEASAEMFEKSMLYLP 471 (733)
Q Consensus 437 ~~~~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~ 471 (733)
.|+..++ .+......|++++|.+.-..+++.-|
T Consensus 99 ~w~~~ll--~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 99 ELTKSLV--SFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp HHHHHHH--HHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH--HHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 4666665 88889999999999999999987655
No 261
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.64 E-value=55 Score=34.63 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=55.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC-H--HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQA-L--SVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVT 597 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~-~--~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~ 597 (733)
.+=|...||.++|.+|++.+.. +.+.+.++..++..+++.++ . +.+.+-|..|+. .+--...+....+.-++.
T Consensus 224 L~EY~~s~D~~EA~~ci~EL~~-p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~---~glls~~q~~~Gf~~vl~ 299 (358)
T 3eiq_C 224 LKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK---SSTITIDQMKRGYERIYN 299 (358)
T ss_dssp HHHHHHHCCHHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---TTCSCHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHccC-CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHH
Confidence 5556677999999999999874 46788999999999999653 2 223334444443 232235566666655555
Q ss_pred HHHhhcCChhHHHHHHHH
Q 004720 598 ILTQETGNESEVLKYMKR 615 (733)
Q Consensus 598 l~~~~~~~~~~~l~~~~~ 615 (733)
.+.+..-|.+.+-.++.+
T Consensus 300 ~ldDl~lDiP~A~~~la~ 317 (358)
T 3eiq_C 300 EIPDINLDVPHSYSVLER 317 (358)
T ss_dssp HHHHHHHHCTTHHHHHHH
T ss_pred hccHhhcccccHHHHHHH
Confidence 554443333333333333
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.43 E-value=2.4e+02 Score=29.08 Aligned_cols=65 Identities=15% Similarity=-0.129 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHhcCChHHHHHHHHHhhhccCCchHHHHhHHHHHHHh--ch--hhhHHHHHHHHHhhh
Q 004720 311 HHASLPVLAMKAWLGLGRYNEAELELRGMVEIKGIPECIWVSAVEAYFQA--AG--TAGAETAKGVFLGLL 377 (733)
Q Consensus 311 ~~p~~~~lk~~il~~~g~~deAi~~l~~~l~~~~~~~~~~ls~~~ly~~~--~~--~~a~~~lk~~l~~ll 377 (733)
-||....+-+..+.+.|++.+|..++. +.+.+.+..+.--..+.+... +. +..+-..+.+|..+.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i--~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~ 200 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM--LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLF 200 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH--hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Confidence 478888999999999999999999976 222112333322234444431 21 455556666655544
No 263
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=44.07 E-value=84 Score=29.19 Aligned_cols=95 Identities=16% Similarity=0.302 Sum_probs=64.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhCCChHHHHHHHHHH
Q 004720 446 CASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID-RAQEYITEAEKLEPNIASAFLKFKIY 524 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~-~A~e~~~~A~~ldp~~~t~~~~~ki~ 524 (733)
.+..+|-..+|...+.-++. +.|.. .-....+-+|..|++...+. +-++.+-+ .+.+.....++.|=||
T Consensus 14 ~a~~afl~~dYs~VI~~L~~---~~~~~-----Lp~~~kY~LA~SYI~~e~Ls~eQKenIln--~itlkSde~yL~YWIy 83 (161)
T 2ynq_A 14 QSTELFLQNKYSDVITTLED---YAPED-----MPYVIQYELASSYVMTESLTEEQRQTVSN--NITLKTDEQYMLYWIY 83 (161)
T ss_dssp HHHHHHTTTCHHHHHHHHTT---SCGGG-----SCHHHHHHHHHHHHHTSSSCHHHHHHHHH--TCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhc---CChhh-----CChhHHHHHHHHHHHccCCCHHHHHHHHh--hCCccCCHHHHHHHHH
Confidence 68889999999998886654 22211 22345788999999987765 33333322 2334556688999999
Q ss_pred HhcCCHHHHHHHHHHHHhccCCChHHHHHHH
Q 004720 525 LQKNDQEGAINQILAMTICLDFTTDFLSLAA 555 (733)
Q Consensus 525 l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~ 555 (733)
+-.|++++|+..-+.+ + +++++..|.
T Consensus 84 iGRg~~~eAlDiA~~L----~-D~qLilyAl 109 (161)
T 2ynq_A 84 IGRSQSEEALELARTI----E-DRDLIVYAL 109 (161)
T ss_dssp HHHTCHHHHHHHHHHH----T-CHHHHHHHH
T ss_pred HcCCchHHHHHHHHhc----C-cHHHHHHHH
Confidence 9999999999644333 2 567666653
No 264
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.80 E-value=25 Score=28.72 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHHHh
Q 004720 129 IKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSKLD 166 (733)
Q Consensus 129 ~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~~~ 166 (733)
+..+-.+.+.||.+.-.|||+-|..+|+.+++-+.+..
T Consensus 9 ~~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l 46 (78)
T 2rpa_A 9 LQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYL 46 (78)
T ss_dssp SHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998877544
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.64 E-value=67 Score=35.60 Aligned_cols=56 Identities=16% Similarity=0.024 Sum_probs=46.2
Q ss_pred HHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 188 RTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 188 ~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
-.+--.+.+..|..+|.+|..+.|..+. .|+++|.....+++ +-+|+.+|.+|+-.
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~-------~~nqLavla~~~~~---~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLVPSNGQ-------PYNQLAILASSKGD---HLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSH-------HHHHHHHHHHHTTC---HHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCc-------hHHHHHHHHhcccc---cHHHHHHHHHHHhc
Confidence 3333445668999999999999998764 48888998888999 99999999999875
No 266
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=39.11 E-value=55 Score=34.69 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=26.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcC
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQ 562 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~ 562 (733)
.+=|...||.++|++|++.+..-..+.+.++..++..+.+.+
T Consensus 19 i~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~ 60 (364)
T 3l6a_A 19 VTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRS 60 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSC
T ss_pred HHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCC
Confidence 444556677777777777765422355667777777777654
No 267
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.54 E-value=31 Score=28.36 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=21.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 446 CASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 446 ~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
.|...-+.|+|++|+.+|..|++.
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 778888999999999999998864
No 268
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=37.27 E-value=38 Score=28.46 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhh
Q 004720 181 DINIARSRTAWEVLEQNLAITLLNRAKCLL 210 (733)
Q Consensus 181 ~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~ 210 (733)
-....||...++.|+|++||.+..+|....
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 367788999999999999999999998653
No 269
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.01 E-value=86 Score=26.13 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHH-HHHHHHHHh
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSF-RVLCLCYLG 493 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~-r~la~cyl~ 493 (733)
..|...|+.++|.+|.-+|+.+...... +..-+++ +.+..|--+
T Consensus 58 ~eak~~y~~~ny~ea~~l~~k~~n~ten-----~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 58 AEGKDLFETANYGEALVFFEKALNLSDN-----EEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHccccC-----HHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999754332 2344565 666666543
No 270
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=36.20 E-value=1.6e+02 Score=25.75 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH
Q 004720 127 PAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK 164 (733)
Q Consensus 127 ~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~ 164 (733)
+.+..+....+.+...=..|+|+.|+.+|..|++++-.
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45555555666667777889999999999999998653
No 271
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.33 E-value=54 Score=27.09 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
..|...-+.|+|++|+.+|..|++.
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3677778999999999999999864
No 272
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.79 E-value=1.7e+02 Score=27.16 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCC--chhhhhhHHHH-HHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFD--VENRILRAKSF-RVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~--~~~~~~~akl~-r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
|..|..+|..|+|=+|=+.++..-.-.+.. +. ..-.+-++ ..-|..+...|+..-|...+.+|+.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er-~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTES-KFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 347889999999999999999987655433 21 12344445 5555677777888888888887754
No 273
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.36 E-value=89 Score=32.23 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=49.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC-H--HHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQA-L--SVAVAALSNLLNFYTSGKPMPTKEVVVLRTIVT 597 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~-~--~~a~~aL~~Ll~~~~~~~~~~~~~~~~lR~li~ 597 (733)
.+=|...||.++|.+|++.+.. +.+.+.++..++..+++.++ . +.+.+-|..|.+. +--.+.+...-+.-++-
T Consensus 173 L~EY~~~~D~~EA~~ci~EL~~-p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~---~~ls~~q~~~Gf~~vl~ 248 (307)
T 2zu6_B 173 LKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKS---STITVDQMKRGYERIYN 248 (307)
T ss_dssp HHHHHHHCCHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHcCC-CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH
Confidence 4455667899999999998864 46788999999999999753 2 2233444444432 22224556665555544
Q ss_pred HHHhh
Q 004720 598 ILTQE 602 (733)
Q Consensus 598 l~~~~ 602 (733)
.+.+.
T Consensus 249 ~l~Dl 253 (307)
T 2zu6_B 249 EIPDI 253 (307)
T ss_dssp HHHHH
T ss_pred hccHh
Confidence 44443
No 274
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=31.55 E-value=33 Score=28.17 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcc
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLY 469 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~ 469 (733)
..|...-+.|+|++|+.+|..|++.
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3778888999999999999999864
No 275
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=29.03 E-value=1.3e+02 Score=28.91 Aligned_cols=57 Identities=7% Similarity=-0.030 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHH
Q 004720 440 HAVLWNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLID 498 (733)
Q Consensus 440 ~~llW~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~ 498 (733)
.+..+-.|..++-+++|.+|.+.+..|+...|.... .++-.++..+.-|.+-+|++.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~--~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ--KNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH--HHHHHHHHHHHHHHHHcCCCC
Confidence 344556899999999999999999999988775532 477788888888888888865
No 276
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.83 E-value=5.6e+02 Score=27.72 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=63.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhh--c-CchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHH-HhcCCCCcc
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLF--G-LFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALEL-CEKGLGEAR 262 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~--~-~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel-~~~~~~~~~ 262 (733)
-..|.+.|+...+..++.-...-.+ . ........+.=+|..|+.++..++ |.+|-.+|..|+.. +....+..
T Consensus 183 ~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~---y~~A~~~L~~A~~~lcp~~~~~~- 258 (455)
T 3t5v_B 183 NNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQ---VHNAFVQFNEAFQSLLNLPLTNQ- 258 (455)
T ss_dssp HHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCCCCH-
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHcc---HHHHHHHHHHHHHhcCCccccch-
Confidence 4789999999999999866654321 1 111124556667789999999999 99999999999998 77542111
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
. ....+..++..|.-+.+-.|.
T Consensus 259 ---~---~~~n~~~ILkyLIpv~LLlG~ 280 (455)
T 3t5v_B 259 ---A---ITRNGTRILNYMIPTGLILGK 280 (455)
T ss_dssp ---H---HHHHHHHHHHHHHHHHHHTTC
T ss_pred ---h---hhhHHHHHHHHHHHHHHHcCC
Confidence 0 022234466666666655563
No 277
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.57 E-value=4.9e+02 Score=26.84 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYLP 471 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~~ 471 (733)
+.|..+++.|++++|++.|+..|...|
T Consensus 107 k~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 107 QLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 479999999999999999999987554
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.43 E-value=1.3e+02 Score=33.38 Aligned_cols=63 Identities=11% Similarity=-0.002 Sum_probs=50.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 004720 187 SRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELC 254 (733)
Q Consensus 187 A~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~ 254 (733)
-+.|+..+.++.|..+.+|+. -|.....-...++=+|..|+.+..+++ |.+|..+|..|+..+
T Consensus 238 LRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~---Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 238 LRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD---YSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTSSC
T ss_pred HHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 568999999999999999996 332111123456667789999999999 999999999999863
No 279
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.32 E-value=1.2e+02 Score=31.68 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=23.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcC
Q 004720 521 FKIYLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQ 562 (733)
Q Consensus 521 ~ki~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~ 562 (733)
.+=|...||.++|++|++.+.. +.+.+.++..++..+.+.+
T Consensus 18 l~Ey~~~~d~~Ea~~ci~el~~-p~~~~~~v~~~i~~~le~~ 58 (339)
T 1ug3_A 18 IEEYLHLNDMKEAVQCVQELAS-PSLLFIFVRHGVESTLERS 58 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCC-GGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-cccHHHHHHHHHHHHhCCC
Confidence 3444555677777777766542 2245566666666666643
No 280
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.04 E-value=2.5e+02 Score=23.22 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK 164 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~ 164 (733)
.+.+..+....+.|...=+.|+|+.|+.+|..|++++-.
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 444445555666677778899999999999999998654
No 281
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.97 E-value=4.7e+02 Score=27.51 Aligned_cols=105 Identities=18% Similarity=0.083 Sum_probs=59.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhccCCC----h-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHH
Q 004720 144 DLKKYDLASGCFEKATEIVSKLDISRISD----S-DERKLLLDINIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYK 218 (733)
Q Consensus 144 ~~g~~~~A~~~lekA~e~~~~~~~~~~~~----~-~e~~~~l~~l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~ 218 (733)
..+++..|..++++..+.+.......... + .+. .+.+.+.-+..++..|+.+.|..+++++............
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea--~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~ 165 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDG--ILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPL 165 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCS--HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhh--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccH
Confidence 44567777777766544332222111000 0 111 1223334477888999999999999999986543222222
Q ss_pred HHHHHHH-HHhHHHHhcCCCCCHHHHHHHHHHHHHH
Q 004720 219 SLANQYL-TFAKSALSKNETNSLNDALKLMNEALEL 253 (733)
Q Consensus 219 ~La~~~~-~~G~~~~~~~~~~~~e~A~~~l~~Alel 253 (733)
.+...|| ..|..+...++ |..+....-..+..
T Consensus 166 ~v~~~~y~~~~~~~~~~~~---~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 166 RITNSFYSTNSQYFKFKND---FNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhh
Confidence 3444455 45666666677 87776666665554
No 282
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=25.95 E-value=55 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhhhHHhccCCcchHHHHHHHHHHHHHH
Q 004720 126 SPAIKSASFYFKTGVVWHDLKKYDLASGCFEKATEIVSK 164 (733)
Q Consensus 126 ~~~~~~~~~~~k~G~~~~~~g~~~~A~~~lekA~e~~~~ 164 (733)
.+....+....+.|...=+.|+|+.|..+|..|++.+-.
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344555556666778888999999999999999998664
No 283
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=25.30 E-value=29 Score=29.03 Aligned_cols=21 Identities=10% Similarity=-0.122 Sum_probs=15.6
Q ss_pred HccCHHHHHHHHHHHHhhhhc
Q 004720 192 EVLEQNLAITLLNRAKCLLFG 212 (733)
Q Consensus 192 ~~g~~~~A~~~~~rA~~l~~~ 212 (733)
-...|+.|..++++++..+..
T Consensus 9 ik~~h~~AF~~Is~aL~~DE~ 29 (89)
T 3eab_A 9 VRVFHKQAFEYISIALRIDED 29 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 345677888888888887654
No 284
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=24.59 E-value=1.1e+02 Score=29.24 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCc
Q 004720 220 LANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGE 290 (733)
Q Consensus 220 La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~ 290 (733)
.+.=+|..|+.++.+++ |.+|-.+|.+|+..+.+.. ...+..++..|.-+.+-.|.
T Consensus 13 ~v~Y~YYlGr~~~~~~~---y~~A~~~L~~A~~~~~~~~------------~~~k~~IL~yLIp~~Ll~G~ 68 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSD---FKQAEEYLSFAFEHCHRSS------------QKNKRMILIYLLPVKMLLGH 68 (203)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSCTTC------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHCCHhH------------HHHHHHHHHHHHHHHHHcCC
Confidence 44456779999999999 9999999999999844321 22344567777666666664
No 285
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.41 E-value=1.2e+02 Score=32.37 Aligned_cols=101 Identities=7% Similarity=-0.040 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHH---
Q 004720 240 LNDALKLMNEALELCEKGLGEARTREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLP--- 316 (733)
Q Consensus 240 ~e~A~~~l~~Alel~~~~~~~~~~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~--- 316 (733)
.++|..++++....+.+...............+-..-+...++..|+..|+.++|...++.+.......++.+|.+.
T Consensus 92 ~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~ 171 (393)
T 4b4t_O 92 FDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSF 171 (393)
T ss_dssp HHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHH
Confidence 78899888877554322111000000000011223335666788999999999999999888763221134455432
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHhh
Q 004720 317 -VLAMKAWLGLGRYNEAELELRGMV 340 (733)
Q Consensus 317 -~lk~~il~~~g~~deAi~~l~~~l 340 (733)
...+..+...+++.++.......+
T Consensus 172 y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 172 YSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555566677777766655443
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.05 E-value=4.4e+02 Score=31.46 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=25.0
Q ss_pred CCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 310 DHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 310 ~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+..|..-|+++++++..|++++|...+++.
T Consensus 837 ~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 837 NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346777799999999999999999998754
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.98 E-value=1.4e+02 Score=30.70 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=24.1
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCChHHHHHHHHHHHHcCC
Q 004720 524 YLQKNDQEGAINQILAMTICLDFTTDFLSLAAHEAVACQA 563 (733)
Q Consensus 524 ~l~~gd~e~Al~~l~~~~~~~~~~~~lL~la~~~a~~~~~ 563 (733)
|...||.++|+.+++.+. ++.+.+.++..++..++..++
T Consensus 13 Yf~~~d~~Ea~~~l~el~-~p~~~~~~v~~~i~~aldr~~ 51 (307)
T 2zu6_B 13 YFEHGDTNEVAEMLRDLN-LGEMKSGVPVLAVSLALEGKA 51 (307)
T ss_dssp HHHHCCHHHHHHHHHTTC-CGGGGGGHHHHHHHHHHTSCH
T ss_pred HHcCCCHHHHHHHHHHhC-CcchHHHHHHHHHHHHhCCCH
Confidence 334467777777776653 334566677777666666554
No 288
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=23.73 E-value=0.21 Score=55.20 Aligned_cols=54 Identities=19% Similarity=0.095 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 277 TLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 277 ~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
+|..||.++++.+...+|+++|-++ .+|+.+.-=+.+..+.|.+++=+.++.|.
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA---------~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC---------SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC---------CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7889999999998777777655433 56777766677888889999999888754
No 289
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.39 E-value=73 Score=27.96 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcC
Q 004720 196 QNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKN 235 (733)
Q Consensus 196 ~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~ 235 (733)
|+.|..++++++.++. ...+..|..+|..|..++.+|
T Consensus 19 h~~AF~~Is~AL~~DE---~g~k~~Al~lYk~GI~eLe~G 55 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDE---LGQKEEAKNYYKQGIGHLLRG 55 (116)
T ss_dssp HHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh---cCCHHHHHHHHHHHHHHHHHh
No 290
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.38 E-value=1.5e+02 Score=24.77 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCchhhhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004720 444 WNCASILFRSKDYEASAEMFEKSMLYLPFDVENRILRAKSFRVLCLCYLGLSLIDRAQEYITEAEK 509 (733)
Q Consensus 444 W~~g~~~~k~~~y~~A~~~y~~aL~~~~~~~~~~~~~akl~r~la~cyl~l~~~~~A~e~~~~A~~ 509 (733)
|..|..+|..|+|=+|=+.++..-.-.|.++. ..-.+-++..-+..+...|+. |...+.++..
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~-~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEER-RLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 34788899999999999999988654443221 234455566666777778887 8888888755
No 291
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.09 E-value=6.7e+02 Score=25.89 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccC
Q 004720 445 NCASILFRSKDYEASAEMFEKSMLYL 470 (733)
Q Consensus 445 ~~g~~~~k~~~y~~A~~~y~~aL~~~ 470 (733)
+.|..+++.|++++|++.|+..|...
T Consensus 119 k~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 119 NEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 47999999999999999999998644
No 292
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=21.65 E-value=4.7e+02 Score=29.57 Aligned_cols=129 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHhHHHHhcCCCCCHHHHHHHHHHHHHHHhcCCCCcc
Q 004720 183 NIARSRTAWEVLEQNLAITLLNRAKCLLFGLFEHYKSLANQYLTFAKSALSKNETNSLNDALKLMNEALELCEKGLGEAR 262 (733)
Q Consensus 183 l~~rA~~a~~~g~~~~A~~~~~rA~~l~~~~~~~~~~La~~~~~~G~~~~~~~~~~~~e~A~~~l~~Alel~~~~~~~~~ 262 (733)
+...+-..+...+.+.|...+.+...-..-++.. ...+...++..+...+. ..++..|+.++... ...+.
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~---~~~~~~~ia~~~~~~~~---~~~~~~~~~~~~~~---~~~~~- 286 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQ---IQELRDIVAWRLMGNDV---TDEQAKWRDDAIMR---SQSTS- 286 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHTSCSTTC---CHHHHHHHHHHHHT---CCCHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHH---HHHHHHHHHHHHHHcCC---ChHHHHHHHhcccc---CCChH-
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHhccCcHHHHHHHHHHHHccCCCCCCCCCcHHHHHHHHHHhcCChHHHHHHHHHh
Q 004720 263 TREETTELKGLKFKTLRFISAIHLQKGEYESVIKCVRVLREGSFDGGDHHASLPVLAMKAWLGLGRYNEAELELRGM 339 (733)
Q Consensus 263 ~~~~~~~~~el~~~~l~~La~~yl~~~~~ekAl~~l~~a~~~~~~~~~~~p~~~~lk~~il~~~g~~deAi~~l~~~ 339 (733)
....++...+..++++.|...++.+-.. ....+...|..++.+...|+.++|...+..+
T Consensus 287 --------------~~e~~~r~Alr~~d~~~a~~~~~~l~~~----~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 287 --------------LIERRVRMALGTGDRRGLNTWLARLPME----AKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp --------------HHHHHHHHHHHHTCHHHHHHHHHHSCTT----GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHHcccc----ccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Done!