Query 004721
Match_columns 733
No_of_seqs 512 out of 2895
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 11:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 3.6E-59 7.8E-64 484.3 27.8 298 92-390 1-298 (299)
2 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 3.1E-51 6.7E-56 433.8 28.2 300 408-708 1-300 (300)
3 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 2.9E-51 6.3E-56 425.2 27.2 278 408-707 1-298 (299)
4 cd08571 GDPD_SHV3_plant Glycer 100.0 1.9E-51 4E-56 435.5 25.5 283 92-391 1-302 (302)
5 cd08571 GDPD_SHV3_plant Glycer 100.0 1.1E-50 2.5E-55 429.5 26.9 296 408-708 1-302 (302)
6 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 2E-49 4.4E-54 421.3 26.0 285 92-385 1-309 (309)
7 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 4.3E-48 9.2E-53 414.6 26.2 292 90-393 15-355 (356)
8 PRK11143 glpQ glycerophosphodi 100.0 3.5E-48 7.6E-53 417.3 25.5 289 90-393 25-352 (355)
9 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 7.9E-48 1.7E-52 409.1 26.6 286 408-702 1-309 (309)
10 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 6.2E-48 1.3E-52 408.6 25.1 280 92-391 1-300 (300)
11 cd08600 GDPD_EcGlpQ_like Glyce 100.0 5.2E-48 1.1E-52 412.1 23.8 279 92-386 1-318 (318)
12 cd08580 GDPD_Rv2277c_like Glyc 100.0 3.7E-47 8.1E-52 393.3 21.6 245 92-388 1-263 (263)
13 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 1.5E-46 3.2E-51 402.7 24.2 302 403-709 12-354 (356)
14 cd08559 GDPD_periplasmic_GlpQ_ 100.0 1.7E-46 3.6E-51 398.5 23.5 274 92-385 1-296 (296)
15 cd08559 GDPD_periplasmic_GlpQ_ 100.0 3.5E-46 7.6E-51 396.0 25.0 278 408-702 1-296 (296)
16 cd08600 GDPD_EcGlpQ_like Glyce 100.0 1E-45 2.2E-50 394.5 26.7 284 408-703 1-318 (318)
17 cd08610 GDPD_GDE6 Glycerophosp 100.0 4.8E-46 1E-50 393.6 20.4 251 85-395 16-285 (316)
18 PRK11143 glpQ glycerophosphodi 100.0 3.9E-45 8.4E-50 393.6 26.8 297 403-712 22-354 (355)
19 cd08580 GDPD_Rv2277c_like Glyc 100.0 4.4E-46 9.5E-51 385.3 16.1 238 408-704 1-262 (263)
20 cd08612 GDPD_GDE4 Glycerophosp 100.0 8.1E-45 1.8E-49 386.3 24.7 255 404-710 23-299 (300)
21 cd08601 GDPD_SaGlpQ_like Glyce 100.0 7E-45 1.5E-49 379.3 23.4 248 409-710 2-256 (256)
22 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 5E-45 1.1E-49 378.3 20.8 233 91-383 1-251 (252)
23 cd08601 GDPD_SaGlpQ_like Glyce 100.0 7.9E-45 1.7E-49 378.9 20.6 237 93-392 2-255 (256)
24 cd08608 GDPD_GDE2 Glycerophosp 100.0 5.7E-45 1.2E-49 389.2 19.6 243 91-395 1-263 (351)
25 cd08609 GDPD_GDE3 Glycerophosp 100.0 7.5E-45 1.6E-49 384.8 19.7 244 91-396 26-286 (315)
26 PRK09454 ugpQ cytoplasmic glyc 100.0 3.3E-44 7.2E-49 372.1 24.2 237 406-708 6-245 (249)
27 cd08581 GDPD_like_1 Glyceropho 100.0 3E-44 6.5E-49 367.2 22.2 228 410-702 1-229 (229)
28 PRK09454 ugpQ cytoplasmic glyc 100.0 2.9E-44 6.2E-49 372.6 21.6 231 91-391 7-245 (249)
29 cd08612 GDPD_GDE4 Glycerophosp 100.0 3.1E-44 6.7E-49 381.8 22.0 254 88-392 23-298 (300)
30 cd08581 GDPD_like_1 Glyceropho 100.0 3.2E-44 6.9E-49 367.0 19.7 221 94-385 1-229 (229)
31 cd08565 GDPD_pAtGDE_like Glyce 100.0 1.5E-43 3.2E-48 363.5 20.7 231 410-705 1-234 (235)
32 cd08568 GDPD_TmGDE_like Glycer 100.0 1.7E-43 3.8E-48 361.8 21.1 223 409-704 1-225 (226)
33 cd08565 GDPD_pAtGDE_like Glyce 100.0 1.2E-43 2.6E-48 364.1 19.7 228 94-388 1-234 (235)
34 cd08562 GDPD_EcUgpQ_like Glyce 100.0 3.5E-43 7.7E-48 360.7 23.0 228 410-702 1-229 (229)
35 cd08575 GDPD_GDE4_like Glycero 100.0 2E-43 4.3E-48 369.1 21.4 240 92-388 1-264 (264)
36 cd08610 GDPD_GDE6 Glycerophosp 100.0 3.5E-43 7.7E-48 371.8 22.5 256 404-710 19-283 (316)
37 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 5.6E-43 1.2E-47 363.0 22.4 243 407-700 1-251 (252)
38 cd08564 GDPD_GsGDE_like Glycer 100.0 8.7E-43 1.9E-47 365.0 23.8 244 407-710 3-265 (265)
39 cd08563 GDPD_TtGDE_like Glycer 100.0 6.8E-43 1.5E-47 358.6 22.4 229 408-702 1-230 (230)
40 cd08568 GDPD_TmGDE_like Glycer 100.0 5.6E-43 1.2E-47 358.1 21.2 221 93-387 1-225 (226)
41 cd08579 GDPD_memb_like Glycero 100.0 3.6E-43 7.9E-48 358.2 19.7 219 410-702 1-220 (220)
42 cd08608 GDPD_GDE2 Glycerophosp 100.0 1.1E-42 2.5E-47 371.6 23.7 253 407-710 1-261 (351)
43 cd08575 GDPD_GDE4_like Glycero 100.0 5.7E-43 1.2E-47 365.6 20.9 246 408-704 1-263 (264)
44 cd08609 GDPD_GDE3 Glycerophosp 100.0 1.3E-42 2.8E-47 367.8 23.3 250 407-712 26-285 (315)
45 cd08562 GDPD_EcUgpQ_like Glyce 100.0 1.4E-42 3E-47 356.3 21.8 223 94-385 1-229 (229)
46 cd08582 GDPD_like_2 Glyceropho 100.0 1.9E-42 4.1E-47 356.0 22.5 228 410-703 1-232 (233)
47 cd08606 GDPD_YPL110cp_fungi Gl 100.0 3E-42 6.5E-47 365.2 23.3 257 408-710 2-285 (286)
48 cd08582 GDPD_like_2 Glyceropho 100.0 2.6E-42 5.7E-47 355.0 21.7 227 94-387 1-233 (233)
49 cd08564 GDPD_GsGDE_like Glycer 100.0 1.6E-42 3.5E-47 363.0 20.2 241 90-392 2-264 (265)
50 cd08573 GDPD_GDE1 Glycerophosp 100.0 4.3E-42 9.3E-47 357.4 22.9 232 410-701 1-257 (258)
51 cd08573 GDPD_GDE1 Glycerophosp 100.0 4.3E-42 9.4E-47 357.3 22.1 231 94-384 1-257 (258)
52 cd08563 GDPD_TtGDE_like Glycer 100.0 8E-42 1.7E-46 350.7 22.5 224 92-385 1-230 (230)
53 cd08579 GDPD_memb_like Glycero 100.0 3.8E-42 8.3E-47 350.6 19.4 215 94-385 1-220 (220)
54 cd08607 GDPD_GDE5 Glycerophosp 100.0 1.1E-41 2.5E-46 361.7 22.2 261 409-702 1-290 (290)
55 cd08570 GDPD_YPL206cp_fungi Gl 100.0 1.9E-41 4.2E-46 348.6 22.9 228 410-702 1-234 (234)
56 cd08561 GDPD_cytoplasmic_ScUgp 100.0 2.4E-41 5.2E-46 351.3 22.5 244 410-709 1-249 (249)
57 cd08605 GDPD_GDE5_like_1_plant 100.0 2.7E-41 5.8E-46 357.1 23.1 253 410-702 2-282 (282)
58 cd08567 GDPD_SpGDE_like Glycer 100.0 2.7E-41 5.9E-46 354.1 22.4 251 409-704 2-263 (263)
59 cd08607 GDPD_GDE5 Glycerophosp 100.0 2.2E-41 4.8E-46 359.5 21.9 252 93-385 1-290 (290)
60 cd08572 GDPD_GDE5_like Glycero 100.0 2E-41 4.3E-46 358.4 21.1 257 93-385 1-293 (293)
61 cd08572 GDPD_GDE5_like Glycero 100.0 2E-41 4.3E-46 358.4 21.1 260 409-702 1-293 (293)
62 cd08570 GDPD_YPL206cp_fungi Gl 100.0 2.4E-41 5.3E-46 347.8 19.7 221 94-385 1-234 (234)
63 cd08606 GDPD_YPL110cp_fungi Gl 100.0 3.3E-41 7.1E-46 357.3 20.9 252 92-393 2-285 (286)
64 cd08561 GDPD_cytoplasmic_ScUgp 100.0 3.4E-41 7.5E-46 350.1 20.6 240 94-391 1-248 (249)
65 cd08566 GDPD_AtGDE_like Glycer 100.0 7.4E-41 1.6E-45 344.8 21.9 236 409-702 1-240 (240)
66 cd08567 GDPD_SpGDE_like Glycer 100.0 4.6E-41 1E-45 352.3 19.8 243 93-387 2-263 (263)
67 cd08566 GDPD_AtGDE_like Glycer 100.0 8.1E-41 1.8E-45 344.5 19.4 232 93-385 1-240 (240)
68 cd08605 GDPD_GDE5_like_1_plant 100.0 1.8E-40 3.9E-45 350.8 20.8 246 94-385 2-282 (282)
69 cd08613 GDPD_GDE4_like_1 Glyce 100.0 4.6E-40 1E-44 342.0 22.3 260 81-388 13-307 (309)
70 cd08585 GDPD_like_3 Glyceropho 100.0 2.6E-39 5.6E-44 332.1 21.0 224 408-699 4-236 (237)
71 cd08585 GDPD_like_3 Glyceropho 100.0 2.3E-39 5.1E-44 332.4 19.4 225 92-382 4-236 (237)
72 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 6.1E-39 1.3E-43 330.7 21.9 231 410-703 1-236 (237)
73 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 4.2E-38 9E-43 324.4 20.0 224 94-386 1-236 (237)
74 COG0584 UgpQ Glycerophosphoryl 100.0 4.9E-38 1.1E-42 328.2 19.8 242 91-393 5-255 (257)
75 COG0584 UgpQ Glycerophosphoryl 100.0 1.4E-37 3.1E-42 324.8 22.4 247 407-711 5-256 (257)
76 cd08613 GDPD_GDE4_like_1 Glyce 100.0 1.4E-37 3.1E-42 323.4 22.1 241 404-705 20-307 (309)
77 PF03009 GDPD: Glycerophosphor 100.0 1.4E-36 3.1E-41 315.6 21.1 244 413-704 1-256 (256)
78 PF03009 GDPD: Glycerophosphor 100.0 1.7E-35 3.8E-40 307.5 15.6 238 97-386 1-255 (256)
79 cd08556 GDPD Glycerophosphodie 100.0 4E-33 8.7E-38 277.1 18.4 188 410-701 1-189 (189)
80 cd08556 GDPD Glycerophosphodie 100.0 1.1E-31 2.4E-36 266.8 18.6 185 94-384 1-189 (189)
81 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 1.6E-31 3.5E-36 263.3 16.8 170 410-701 1-179 (179)
82 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 9.6E-31 2.1E-35 257.8 16.4 165 94-384 1-179 (179)
83 KOG2258 Glycerophosphoryl dies 99.9 5.1E-28 1.1E-32 259.3 5.8 332 335-716 3-336 (341)
84 cd08578 GDPD_NUC-2_fungi Putat 99.9 1.4E-25 3E-30 235.3 19.2 237 424-701 17-296 (300)
85 cd08578 GDPD_NUC-2_fungi Putat 99.9 3E-23 6.4E-28 217.7 17.3 227 108-384 17-296 (300)
86 cd08584 PI-PLCc_GDPD_SF_unchar 99.9 2.2E-21 4.8E-26 188.1 15.3 186 410-704 1-191 (192)
87 cd08584 PI-PLCc_GDPD_SF_unchar 99.8 1.7E-20 3.6E-25 182.0 15.6 187 94-388 1-192 (192)
88 KOG2258 Glycerophosphoryl dies 99.8 5E-21 1.1E-25 205.4 12.7 251 91-391 68-328 (341)
89 cd08577 PI-PLCc_GDPD_SF_unchar 99.3 7.7E-12 1.7E-16 127.1 13.1 212 411-701 4-228 (228)
90 cd08576 GDPD_like_SMaseD_PLD G 99.3 3.3E-11 7.1E-16 123.2 16.1 216 410-714 2-251 (265)
91 cd08577 PI-PLCc_GDPD_SF_unchar 99.3 1.1E-11 2.3E-16 126.1 10.3 93 112-250 15-108 (228)
92 cd08576 GDPD_like_SMaseD_PLD G 99.1 7.1E-10 1.5E-14 113.5 14.5 53 328-395 192-249 (265)
93 PF13653 GDPD_2: Glycerophosph 98.3 2.1E-07 4.5E-12 62.2 1.5 30 342-386 1-30 (30)
94 PF13653 GDPD_2: Glycerophosph 98.3 4.7E-07 1E-11 60.5 2.8 30 660-703 1-30 (30)
95 cd08592 PI-PLCc_gamma Catalyti 98.3 2.7E-06 5.9E-11 85.3 9.6 51 409-459 13-66 (229)
96 cd08592 PI-PLCc_gamma Catalyti 98.2 3.4E-06 7.3E-11 84.7 8.7 43 102-146 25-67 (229)
97 cd08627 PI-PLCc_gamma1 Catalyt 98.0 6.6E-06 1.4E-10 82.2 4.5 51 409-459 13-66 (229)
98 cd08627 PI-PLCc_gamma1 Catalyt 97.9 1.3E-05 2.9E-10 80.1 5.3 43 102-146 25-67 (229)
99 KOG2421 Predicted starch-bindi 97.7 4.8E-06 1E-10 92.0 -0.9 57 406-462 323-386 (417)
100 smart00148 PLCXc Phospholipase 97.4 0.001 2.2E-08 62.2 9.6 43 417-459 23-65 (135)
101 KOG2421 Predicted starch-bindi 97.4 2.4E-05 5.3E-10 86.5 -1.7 58 90-149 323-387 (417)
102 cd08597 PI-PLCc_PRIP_metazoa C 97.3 0.00025 5.4E-09 72.9 4.1 41 419-459 26-66 (260)
103 cd08597 PI-PLCc_PRIP_metazoa C 97.1 0.00054 1.2E-08 70.5 4.9 41 103-145 26-66 (260)
104 smart00148 PLCXc Phospholipase 96.7 0.0022 4.8E-08 60.0 5.2 43 101-145 23-65 (135)
105 cd08633 PI-PLCc_eta2 Catalytic 95.8 0.039 8.4E-07 56.5 8.4 42 102-145 25-66 (254)
106 cd08596 PI-PLCc_epsilon Cataly 95.6 0.047 1E-06 56.1 8.3 41 103-145 26-66 (254)
107 cd08594 PI-PLCc_eta Catalytic 95.6 0.013 2.9E-07 58.9 4.2 42 418-459 25-66 (227)
108 cd08631 PI-PLCc_delta4 Catalyt 95.5 0.05 1.1E-06 56.0 8.3 40 104-145 27-66 (258)
109 PF10223 DUF2181: Uncharacteri 95.3 1 2.2E-05 46.3 16.9 37 106-144 11-53 (244)
110 cd08626 PI-PLCc_beta4 Catalyti 95.2 0.079 1.7E-06 54.5 8.6 41 103-145 26-68 (257)
111 cd08633 PI-PLCc_eta2 Catalytic 95.2 0.02 4.4E-07 58.5 4.3 42 418-459 25-66 (254)
112 cd08593 PI-PLCc_delta Catalyti 95.2 0.075 1.6E-06 54.9 8.2 41 103-145 26-66 (257)
113 cd08558 PI-PLCc_eukaryota Cata 95.1 0.024 5.1E-07 57.3 4.4 42 418-459 25-66 (226)
114 cd08599 PI-PLCc_plant Catalyti 95.1 0.03 6.6E-07 56.6 5.0 52 408-459 12-66 (228)
115 cd08632 PI-PLCc_eta1 Catalytic 95.0 0.024 5.1E-07 57.9 4.2 41 419-459 26-66 (253)
116 cd08595 PI-PLCc_zeta Catalytic 95.0 0.023 5.1E-07 58.3 4.0 41 419-459 26-66 (257)
117 cd08596 PI-PLCc_epsilon Cataly 95.0 0.026 5.6E-07 57.9 4.3 42 418-459 25-66 (254)
118 cd08594 PI-PLCc_eta Catalytic 95.0 0.032 7E-07 56.2 4.9 42 102-145 25-66 (227)
119 PF10223 DUF2181: Uncharacteri 95.0 2.4 5.2E-05 43.6 18.4 199 422-706 11-242 (244)
120 cd08631 PI-PLCc_delta4 Catalyt 95.0 0.025 5.5E-07 58.1 4.2 41 419-459 26-66 (258)
121 cd08630 PI-PLCc_delta3 Catalyt 94.9 0.026 5.7E-07 58.0 4.1 42 419-460 26-67 (258)
122 cd08623 PI-PLCc_beta1 Catalyti 94.9 0.077 1.7E-06 54.6 7.4 41 103-145 26-68 (258)
123 cd08629 PI-PLCc_delta1 Catalyt 94.7 0.033 7.1E-07 57.2 4.3 42 418-459 25-66 (258)
124 cd08628 PI-PLCc_gamma2 Catalyt 94.7 0.031 6.8E-07 57.4 4.1 41 419-459 26-66 (254)
125 cd08598 PI-PLC1c_yeast Catalyt 94.6 0.036 7.8E-07 56.2 4.2 41 419-459 26-66 (231)
126 cd08593 PI-PLCc_delta Catalyti 94.6 0.034 7.4E-07 57.3 4.1 41 419-459 26-66 (257)
127 cd08591 PI-PLCc_beta Catalytic 94.5 0.13 2.8E-06 52.9 8.0 41 103-145 26-68 (257)
128 cd08626 PI-PLCc_beta4 Catalyti 94.4 0.038 8.3E-07 56.8 4.0 41 419-459 26-68 (257)
129 cd08599 PI-PLCc_plant Catalyti 94.3 0.064 1.4E-06 54.3 5.2 41 103-145 26-66 (228)
130 cd08558 PI-PLCc_eukaryota Cata 94.3 0.063 1.4E-06 54.3 5.1 41 103-145 26-66 (226)
131 cd08632 PI-PLCc_eta1 Catalytic 94.3 0.059 1.3E-06 55.1 4.9 40 104-145 27-66 (253)
132 cd08595 PI-PLCc_zeta Catalytic 94.3 0.058 1.2E-06 55.5 4.8 41 103-145 26-66 (257)
133 cd08623 PI-PLCc_beta1 Catalyti 94.1 0.052 1.1E-06 55.8 4.0 41 419-459 26-68 (258)
134 cd08630 PI-PLCc_delta3 Catalyt 94.0 0.067 1.4E-06 55.1 4.7 41 103-145 26-66 (258)
135 cd08624 PI-PLCc_beta2 Catalyti 94.0 0.053 1.2E-06 55.9 4.0 42 418-459 25-68 (261)
136 cd08628 PI-PLCc_gamma2 Catalyt 93.9 0.074 1.6E-06 54.7 4.7 40 104-145 27-66 (254)
137 cd08629 PI-PLCc_delta1 Catalyt 93.8 0.08 1.7E-06 54.4 4.9 41 103-145 26-66 (258)
138 cd08598 PI-PLC1c_yeast Catalyt 93.7 0.092 2E-06 53.3 5.0 41 103-145 26-66 (231)
139 cd08591 PI-PLCc_beta Catalytic 93.7 0.067 1.5E-06 55.0 4.0 41 419-459 26-68 (257)
140 cd08625 PI-PLCc_beta3 Catalyti 93.3 0.086 1.9E-06 54.5 4.0 42 418-459 25-68 (258)
141 KOG1264 Phospholipase C [Lipid 93.1 0.068 1.5E-06 61.6 3.2 49 411-459 322-373 (1267)
142 cd08624 PI-PLCc_beta2 Catalyti 92.9 0.13 2.7E-06 53.1 4.7 42 102-145 25-68 (261)
143 cd08625 PI-PLCc_beta3 Catalyti 91.8 0.22 4.7E-06 51.6 4.6 41 103-145 26-68 (258)
144 PLN02230 phosphoinositide phos 89.0 0.39 8.4E-06 55.5 4.1 54 408-461 125-181 (598)
145 KOG1264 Phospholipase C [Lipid 88.4 0.43 9.4E-06 55.3 3.8 50 94-145 321-373 (1267)
146 PLN02228 Phosphoinositide phos 86.5 0.66 1.4E-05 53.4 4.0 52 409-460 117-172 (567)
147 KOG0169 Phosphoinositide-speci 85.9 0.85 1.8E-05 53.1 4.4 57 404-460 295-354 (746)
148 PLN02230 phosphoinositide phos 85.8 0.89 1.9E-05 52.6 4.6 51 93-145 126-179 (598)
149 PLN02222 phosphoinositide phos 84.7 2.8 6E-05 48.6 7.8 51 93-145 114-168 (581)
150 PLN02952 phosphoinositide phos 84.2 1 2.2E-05 52.2 4.1 53 408-460 133-189 (599)
151 KOG0169 Phosphoinositide-speci 82.4 1.2 2.6E-05 51.9 3.8 41 103-145 313-353 (746)
152 PLN02228 Phosphoinositide phos 82.2 1.5 3.4E-05 50.4 4.5 51 93-145 117-171 (567)
153 PLN02591 tryptophan synthase 81.6 17 0.00038 37.7 11.6 195 420-700 14-218 (250)
154 PF04309 G3P_antiterm: Glycero 81.0 11 0.00023 36.9 9.2 142 522-704 28-173 (175)
155 PLN02222 phosphoinositide phos 80.1 1.7 3.6E-05 50.4 3.9 54 408-461 113-170 (581)
156 PLN02952 phosphoinositide phos 79.2 2.4 5.1E-05 49.3 4.7 51 93-145 134-188 (599)
157 PF04309 G3P_antiterm: Glycero 78.1 6.2 0.00014 38.5 6.6 57 646-710 32-89 (175)
158 PLN02223 phosphoinositide phos 77.4 2.3 5.1E-05 48.4 3.9 38 423-460 135-172 (537)
159 cd00137 PI-PLCc Catalytic doma 77.3 2.8 6.1E-05 44.2 4.3 40 420-459 32-71 (274)
160 cd04728 ThiG Thiazole synthase 76.4 6.5 0.00014 40.3 6.4 38 330-382 110-150 (248)
161 cd08589 PI-PLCc_SaPLC1_like Ca 75.5 17 0.00037 39.0 9.6 33 420-452 42-74 (324)
162 PLN02591 tryptophan synthase 74.7 34 0.00073 35.5 11.3 27 104-132 14-40 (250)
163 PLN02223 phosphoinositide phos 73.2 3.4 7.3E-05 47.1 3.8 50 94-145 118-171 (537)
164 cd00137 PI-PLCc Catalytic doma 72.6 5.4 0.00012 42.0 5.0 39 105-145 33-71 (274)
165 PRK13111 trpA tryptophan synth 72.0 93 0.002 32.5 13.9 150 407-601 11-168 (258)
166 COG1830 FbaB DhnA-type fructos 72.0 11 0.00025 38.9 6.9 96 330-439 133-234 (265)
167 PF00388 PI-PLC-X: Phosphatidy 71.8 4.5 9.8E-05 38.1 3.8 40 420-459 24-63 (146)
168 PRK06852 aldolase; Validated 71.2 11 0.00024 40.2 6.8 96 330-439 157-262 (304)
169 PRK00278 trpC indole-3-glycero 70.7 60 0.0013 33.9 12.2 137 207-383 40-187 (260)
170 PRK00208 thiG thiazole synthas 70.5 11 0.00024 38.7 6.4 38 330-382 110-150 (250)
171 PRK08227 autoinducer 2 aldolas 69.9 15 0.00033 38.4 7.4 90 330-440 130-224 (264)
172 PF00388 PI-PLC-X: Phosphatidy 67.0 7.6 0.00017 36.6 4.3 39 105-145 25-63 (146)
173 PF10566 Glyco_hydro_97: Glyco 64.8 16 0.00034 38.4 6.4 86 617-704 32-130 (273)
174 cd00958 DhnA Class I fructose- 64.2 26 0.00056 35.8 7.9 97 330-439 112-211 (235)
175 COG0269 SgbH 3-hexulose-6-phos 59.6 52 0.0011 33.2 8.6 44 330-385 96-139 (217)
176 PRK09250 fructose-bisphosphate 59.5 27 0.00058 37.8 7.1 105 330-439 182-315 (348)
177 CHL00200 trpA tryptophan synth 57.2 1.4E+02 0.0029 31.4 11.8 38 93-132 16-53 (263)
178 cd08589 PI-PLCc_SaPLC1_like Ca 57.0 13 0.00028 39.9 4.2 42 104-147 42-103 (324)
179 COG1242 Predicted Fe-S oxidore 55.9 43 0.00094 35.0 7.5 115 522-697 97-215 (312)
180 COG5016 Pyruvate/oxaloacetate 54.2 67 0.0014 35.4 8.9 157 258-443 65-232 (472)
181 TIGR03151 enACPred_II putative 53.9 32 0.0007 36.9 6.7 87 329-444 98-192 (307)
182 cd00945 Aldolase_Class_I Class 52.1 21 0.00046 34.9 4.7 66 364-441 17-84 (201)
183 COG0134 TrpC Indole-3-glycerol 51.9 1E+02 0.0022 32.0 9.6 142 206-387 33-187 (254)
184 COG0826 Collagenase and relate 51.1 16 0.00035 39.8 3.9 118 330-456 52-177 (347)
185 COG1954 GlpP Glycerol-3-phosph 50.1 2.5E+02 0.0055 27.3 11.8 140 522-702 32-175 (181)
186 cd00331 IGPS Indole-3-glycerol 44.4 2.5E+02 0.0054 28.1 11.2 128 217-383 10-148 (217)
187 cd08590 PI-PLCc_Rv2075c_like C 43.8 92 0.002 32.7 8.0 35 422-457 41-75 (267)
188 cd04724 Tryptophan_synthase_al 42.9 3.9E+02 0.0085 27.4 15.7 24 422-445 14-37 (242)
189 KOG1265 Phospholipase C [Lipid 41.3 22 0.00048 42.5 3.1 38 423-460 342-381 (1189)
190 PF09370 TIM-br_sig_trns: TIM- 39.9 33 0.00071 35.7 3.8 39 330-384 140-178 (268)
191 PF00218 IGPS: Indole-3-glycer 39.5 1.6E+02 0.0034 30.7 8.9 190 204-440 33-236 (254)
192 PF10566 Glyco_hydro_97: Glyco 39.3 33 0.00072 36.1 3.8 55 330-387 76-130 (273)
193 COG1954 GlpP Glycerol-3-phosph 39.3 1.5E+02 0.0032 28.8 7.8 55 647-710 37-93 (181)
194 COG1242 Predicted Fe-S oxidore 39.0 1.4E+02 0.0031 31.3 8.2 45 331-381 172-216 (312)
195 PRK13802 bifunctional indole-3 39.0 4E+02 0.0087 32.1 13.1 87 330-440 150-238 (695)
196 TIGR01182 eda Entner-Doudoroff 38.5 2.6E+02 0.0057 28.1 9.9 117 562-715 22-145 (204)
197 PRK13957 indole-3-glycerol-pho 37.5 2.9E+02 0.0064 28.6 10.4 140 207-387 31-182 (247)
198 PRK12330 oxaloacetate decarbox 37.5 1.5E+02 0.0034 34.0 9.1 162 257-443 63-233 (499)
199 PF02638 DUF187: Glycosyl hydr 37.3 27 0.00059 37.5 3.0 18 330-347 73-90 (311)
200 PF03102 NeuB: NeuB family; I 37.0 87 0.0019 32.3 6.5 136 239-445 59-204 (241)
201 TIGR03569 NeuB_NnaB N-acetylne 36.6 5.6E+02 0.012 27.8 12.8 155 239-499 79-247 (329)
202 PRK07998 gatY putative fructos 36.1 1.3E+02 0.0027 32.0 7.6 97 329-440 117-227 (283)
203 PRK12581 oxaloacetate decarbox 34.6 2.2E+02 0.0049 32.4 9.7 159 257-444 71-240 (468)
204 PF09370 TIM-br_sig_trns: TIM- 33.0 42 0.00091 34.9 3.3 39 648-701 140-178 (268)
205 cd04732 HisA HisA. Phosphorib 32.6 1.4E+02 0.003 30.3 7.2 95 330-439 62-163 (234)
206 COG0269 SgbH 3-hexulose-6-phos 32.4 5.5E+02 0.012 26.0 11.7 44 648-702 96-139 (217)
207 PF03060 NMO: Nitronate monoox 32.3 59 0.0013 35.2 4.6 41 330-386 126-166 (330)
208 COG0826 Collagenase and relate 31.5 1.2E+02 0.0026 33.1 6.8 63 648-716 52-114 (347)
209 COG3315 O-Methyltransferase in 31.5 6E+02 0.013 27.1 12.0 141 543-700 117-263 (297)
210 COG2200 Rtn c-di-GMP phosphodi 31.3 66 0.0014 33.4 4.6 39 330-383 196-234 (256)
211 COG1064 AdhP Zn-dependent alco 30.2 3.9E+02 0.0084 29.1 10.2 70 332-435 182-252 (339)
212 PRK11059 regulatory protein Cs 30.2 3.1E+02 0.0067 32.6 10.6 123 527-698 504-629 (640)
213 PRK09140 2-dehydro-3-deoxy-6-p 29.7 1.9E+02 0.0041 29.0 7.4 76 332-440 51-129 (206)
214 cd04728 ThiG Thiazole synthase 29.7 1.1E+02 0.0023 31.7 5.6 49 648-711 110-173 (248)
215 cd04743 NPD_PKS 2-Nitropropane 29.2 78 0.0017 34.1 4.7 40 330-385 93-132 (320)
216 PRK06552 keto-hydroxyglutarate 27.7 5.2E+02 0.011 26.1 10.2 40 647-702 98-137 (213)
217 cd04731 HisF The cyclase subun 26.9 86 0.0019 32.1 4.6 79 360-441 80-168 (243)
218 PF01081 Aldolase: KDPG and KH 26.9 3.6E+02 0.0078 26.9 8.7 115 562-713 22-143 (196)
219 PRK00208 thiG thiazole synthas 26.8 1.3E+02 0.0028 31.1 5.6 49 648-711 110-173 (250)
220 KOG1265 Phospholipase C [Lipid 26.7 64 0.0014 38.8 3.8 37 107-145 342-380 (1189)
221 TIGR01454 AHBA_synth_RP 3-amin 26.6 6.1E+02 0.013 24.7 12.2 46 647-710 157-204 (205)
222 PRK13561 putative diguanylate 26.5 1.8E+02 0.0039 34.5 7.8 40 330-384 594-633 (651)
223 PRK11572 copper homeostasis pr 26.3 3.5E+02 0.0076 28.1 8.6 107 327-451 37-152 (248)
224 cd01948 EAL EAL domain. This d 26.0 4.9E+02 0.011 25.8 10.0 146 527-698 67-228 (240)
225 PRK08649 inosine 5-monophospha 25.7 1.7E+02 0.0036 32.3 6.7 78 331-439 122-212 (368)
226 COG1830 FbaB DhnA-type fructos 25.4 1.9E+02 0.0042 30.2 6.6 63 647-710 132-199 (265)
227 PRK07114 keto-hydroxyglutarate 25.3 7.3E+02 0.016 25.2 11.3 50 647-712 101-152 (222)
228 TIGR01422 phosphonatase phosph 25.3 7.3E+02 0.016 25.2 11.6 18 647-664 183-200 (253)
229 PF03060 NMO: Nitronate monoox 25.1 84 0.0018 34.0 4.2 39 647-700 125-163 (330)
230 PRK14042 pyruvate carboxylase 25.1 3.4E+02 0.0073 32.1 9.3 117 588-714 62-194 (596)
231 PRK14042 pyruvate carboxylase 25.0 4.1E+02 0.0089 31.4 10.0 159 257-445 62-232 (596)
232 PRK06015 keto-hydroxyglutarate 24.8 3.4E+02 0.0073 27.2 8.1 117 562-715 18-141 (201)
233 TIGR01334 modD putative molybd 24.8 4.8E+02 0.01 27.5 9.6 65 648-727 176-245 (277)
234 TIGR01235 pyruv_carbox pyruvat 24.8 3.2E+02 0.007 35.0 9.7 120 589-712 592-727 (1143)
235 PRK13561 putative diguanylate 24.7 4.2E+02 0.009 31.4 10.5 49 648-710 594-645 (651)
236 cd04743 NPD_PKS 2-Nitropropane 24.5 95 0.0021 33.5 4.4 37 648-699 93-129 (320)
237 PF00563 EAL: EAL domain; Int 24.3 95 0.0021 31.0 4.3 39 330-383 193-231 (236)
238 COG4943 Predicted signal trans 24.1 3.8E+02 0.0083 30.5 8.9 138 527-696 341-495 (524)
239 PRK15452 putative protease; Pr 24.0 1.8E+02 0.0039 33.0 6.6 55 648-710 49-106 (443)
240 cd00452 KDPG_aldolase KDPG and 23.7 3.2E+02 0.0069 26.8 7.7 79 331-442 44-124 (190)
241 COG5016 Pyruvate/oxaloacetate 23.4 1.1E+02 0.0025 33.7 4.6 153 525-712 25-194 (472)
242 PRK08195 4-hyroxy-2-oxovalerat 23.2 9.8E+02 0.021 25.9 12.8 62 647-716 117-186 (337)
243 cd06589 GH31 The enzymes of gl 22.8 1.4E+02 0.0029 31.2 5.1 49 329-387 68-117 (265)
244 TIGR03128 RuMP_HxlA 3-hexulose 22.6 3.4E+02 0.0073 26.8 7.8 42 330-383 92-133 (206)
245 COG2200 Rtn c-di-GMP phosphodi 22.5 1.1E+02 0.0025 31.6 4.5 40 647-700 195-234 (256)
246 PRK05718 keto-hydroxyglutarate 22.3 8.1E+02 0.018 24.7 11.6 142 526-715 4-152 (212)
247 cd08590 PI-PLCc_Rv2075c_like C 21.9 85 0.0018 32.9 3.4 36 106-144 41-76 (267)
248 COG2217 ZntA Cation transport 21.9 1E+02 0.0022 37.1 4.4 68 647-727 542-610 (713)
249 PRK14040 oxaloacetate decarbox 21.8 3.8E+02 0.0082 31.7 8.9 118 588-713 63-194 (593)
250 COG0113 HemB Delta-aminolevuli 21.7 5.9E+02 0.013 27.2 9.2 137 560-711 175-329 (330)
251 PF05382 Amidase_5: Bacterioph 21.5 1.1E+02 0.0024 28.9 3.7 95 330-461 33-127 (145)
252 cd04726 KGPDC_HPS 3-Keto-L-gul 21.3 3.1E+02 0.0067 26.9 7.2 39 330-383 93-133 (202)
253 PRK10060 RNase II stability mo 21.3 3.8E+02 0.0082 32.0 9.1 39 330-383 601-639 (663)
254 PRK06559 nicotinate-nucleotide 20.7 1.8E+02 0.0039 30.9 5.5 81 330-439 184-266 (290)
255 TIGR01769 GGGP geranylgeranylg 20.6 4.9E+02 0.011 26.2 8.3 40 646-699 163-204 (205)
256 cd02812 PcrB_like PcrB_like pr 20.6 6.8E+02 0.015 25.4 9.4 49 646-708 161-217 (219)
257 PRK12581 oxaloacetate decarbox 20.4 4.1E+02 0.0088 30.4 8.5 116 588-713 71-202 (468)
258 PRK10060 RNase II stability mo 20.4 4.1E+02 0.0089 31.7 9.2 39 648-700 601-639 (663)
259 PF01729 QRPTase_C: Quinolinat 20.2 94 0.002 30.2 3.1 62 363-440 90-153 (169)
260 PF04413 Glycos_transf_N: 3-De 20.1 3.6E+02 0.0078 26.5 7.2 127 563-710 38-166 (186)
No 1
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=3.6e-59 Score=484.28 Aligned_cols=298 Identities=64% Similarity=1.113 Sum_probs=267.8
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||++|.+||||++||+.|++.|+++.+||||||+||||++||+||.+|+|+||+.+.|++|++++.+||...+|
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g 80 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKG 80 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccccccccccccCC
Confidence 68999999999999999999999999999411899999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCCc
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN 251 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~ 251 (733)
|++.||||+||++|++.+++..+++.|+| .++||||+|+|++++..++++|||.+.++...|.++++.|+++|+++|.+
T Consensus 81 ~~~~d~TlaELk~L~~~~~~~~r~~~~~g-~~~IpTLeEvl~~~~~~gi~i~ie~~~~~~~~gl~~~~~l~~~L~~~~~v 159 (299)
T cd08603 81 WFSVDFTLAELQQVTLIQGIFSRTPIFDG-QYPISTVEDVVTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKVD 159 (299)
T ss_pred ceeccCCHHHHhhCCCCCCcccCCcccCC-cCCCCCHHHHHHHhHhcCeEEEEecHHHHHHcCCCHHHHHHHHHHHcCcE
Confidence 99999999999999998766667788888 45999999999999888999999999999889999999999999999999
Q ss_pred eeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCCChH
Q 004721 252 YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTT 331 (733)
Q Consensus 252 ~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~ 331 (733)
+||||+...|+++++.....+.++++.+++.+...+.++..|+++.++|++|++||++++|++.++++.+.++.+..+..
T Consensus 160 ~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~ 239 (299)
T cd08603 160 YISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDSDQYLQPATS 239 (299)
T ss_pred EEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHHhHHHHHHHHhhcCCChhheeecCCCCcccCccH
Confidence 99999999999999863100467876455555555566789999999999999999999999999999877777777789
Q ss_pred HHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccc
Q 004721 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (733)
Q Consensus 332 ~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~ 390 (733)
+|++||++||+||+||+++|...++++..|+..|+..+++.|+++|||||||+|+++.+
T Consensus 240 lV~~Ah~agL~Vh~~tfr~e~~~~~~~~~d~~~e~~~~~~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 240 LVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFVGNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred HHHHHHHcCCeEEEEEeeCCCCccccccCCHHHHHHHHHhcCCCCCCEEEecCchhhcc
Confidence 99999999999999999999668888888999999999987767799999999998764
No 2
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=3.1e-51 Score=433.79 Aligned_cols=300 Identities=65% Similarity=1.028 Sum_probs=241.9
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|+++|||+||||||+||||++||+||.+|+|+||++...|++|+++.++..+.+|++
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVPEIGSTSGIF 80 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccccccccCcee
Confidence 57999999999999999999999999999999999999999999999999999999987756888887766655567777
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
+.++|++||++|+++..+.+...+.++.+.+.++++||||+|+|++++.... ++++||||.+....+..+..+++++++
T Consensus 81 v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~~-~~l~iEiK~~~~~~~~~~~~~~~~v~~ 159 (300)
T cd08604 81 TFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLSDFLDLAKNKSL-SGVLINVENAAYLAEKKGLDVVDAVLD 159 (300)
T ss_pred eecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCCHHHHHHHHHhcCC-ceEEEEeeccchhhhccCccHHHHHHH
Confidence 9999999999999875433333334555667666899999999999987622 379999997654321123468999999
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccc
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSA 647 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~ 647 (733)
+++++++.....++|+|+||++++|+.+++..++++++++.....+.....+..+..+|++++++...+.+....++..+
T Consensus 160 ~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~ 239 (300)
T cd08604 160 ALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLTRQ 239 (300)
T ss_pred HHHHcCCCCCCCCeEEEEcCCHHHHHHHHhccCCceEEEecCcccccChhHHHHHHHhccEEEeChhhcccccCCcccCc
Confidence 99999985321148999999999999999987888999986433333334455666778888877666655433344445
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHH
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~ 708 (733)
+++|+.+|++|++|++||||++...++++|+.||++++.+++.++||||||||+|+++.+|
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~~~~~~ 300 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPATAARY 300 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcCCCEEEecCchhhhcC
Confidence 6899999999999999999998778899999999877776666899999999999998764
No 3
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=2.9e-51 Score=425.23 Aligned_cols=278 Identities=26% Similarity=0.461 Sum_probs=240.5
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCC--CeeecCceeecCCeEEEeeccccccccccCCCcCCCccccc-ccccccC
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGV--DFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTI-PEIMAGS 484 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Ga--d~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~-~~~~~~~ 484 (733)
|+||||||++|.+||||++||+.|+++|| ++||||||+||||++||+||.+|+|+||++. .|++|++++ ++|+..+
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~-~F~~r~~t~~idG~~~~ 79 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIAR-VYPKRKKTYSVNGVSTK 79 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCcc-ccccccccccccccccC
Confidence 57999999999999999999999999999 4799999999999999999999999999887 499998874 6999999
Q ss_pred cccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHH
Q 004721 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (733)
Q Consensus 485 g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (733)
|+++.|+||+||++|++.... .++++.|.|..+||||+|+|++++.. ++++|||.+.++. +.|.++++.
T Consensus 80 g~~~~d~TlaELk~L~~~~~~------~~r~~~~~g~~~IpTLeEvl~~~~~~----gi~i~ie~~~~~~-~~gl~~~~~ 148 (299)
T cd08603 80 GWFSVDFTLAELQQVTLIQGI------FSRTPIFDGQYPISTVEDVVTLAKPE----GLWLNVQHDAFYQ-QHNLSMSSY 148 (299)
T ss_pred CceeccCCHHHHhhCCCCCCc------ccCCcccCCcCCCCCHHHHHHHhHhc----CeEEEEecHHHHH-HcCCCHHHH
Confidence 988999999999999986432 22567777655999999999999875 7999999998886 589999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc---cCceEEE-Eeecc---------cchhhhHHHHHHHHHHhHhcC
Q 004721 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVY-KVKEN---------IRDALNQTIEDIKKFADSVVL 631 (733)
Q Consensus 565 v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~---p~~~~~~-l~~~~---------~~~~~~~~l~~i~~~a~~i~~ 631 (733)
|+++|++++ .++||||+...|+++++. +++++++ +.+.. +.++.. ++++|++||++|+|
T Consensus 149 l~~~L~~~~-------~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~-~L~eIa~yAdgig~ 220 (299)
T cd08603 149 LLSLSKTVK-------VDYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILK-NLTFIKTFASGILV 220 (299)
T ss_pred HHHHHHHcC-------cEEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHH-hHHHHHHHHhhcCC
Confidence 999999885 479999999999999875 5677775 54331 122222 58899999999999
Q ss_pred CCcccccCC-ccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcC---cCEEEeCChHHHHH
Q 004721 632 SKESVYPLN-SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG---IDGVITEFPMTAAR 707 (733)
Q Consensus 632 ~~~~i~~~~-~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~G---VdgIiTD~P~~~~~ 707 (733)
++.+++|.. ..++...+.+|+.+|++|+.||+||++++.. ++++|+.||..|+..++ ..| ||||+||+|+++.+
T Consensus 221 ~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~-~~~~~~~d~~~e~~~~~-~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 221 PKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFD-ISYNYSYDPVAEYLSFV-GNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred ChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCCC-ccccccCCHHHHHHHHH-hcCCCCCCEEEecCchhhcc
Confidence 999999875 4566667789999999999999999999976 99999999999999997 777 99999999998754
No 4
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=1.9e-51 Score=435.47 Aligned_cols=283 Identities=44% Similarity=0.740 Sum_probs=232.0
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|+++||| +||||||+||||++||+||++|+||||+.+.++.+++++.++|.+..|
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~g 78 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGAD--VLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTYVVEGQSTSG 78 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCC--EEEeeeeEcCCCcEEEeCCchhcCCcccccccccccceecccCcccCC
Confidence 679999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHhhccccccccccC----CCCCCCCCCcccccHHHHHHhhCC---CceEeeccCchhhhh-cCCcHHHHHHH
Q 004721 172 WFSIDYTLNDLSNIILNQGVYS----RTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQ-HNLSMRSFVLS 243 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~----~~~~~~g~~~~iptL~e~l~~~~~---~~l~iEiK~~~~~~~-~~~~~~~~v~~ 243 (733)
|++.|+||+||++|+++.++.+ +.+.|.+ +++||||+|+|++++. .+++||||.+..... .+..+++.+++
T Consensus 79 ~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 157 (302)
T cd08571 79 IFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDN-AGKILTLEDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLT 157 (302)
T ss_pred eeeeeCCHHHHhhCcccccCcccccCCCcccCC-CCCcCCHHHHHHhhhccCCceEEEEccCchhhhhhccccHHHHHHH
Confidence 9999999999999999653322 3455666 6799999999999975 579999997654322 12468899999
Q ss_pred HHhhcCC------ceeccCCHHHHHHHHHhc--CCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCcc
Q 004721 244 VSRSVVV------NYISSPEVNFLRSIAARF--RPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD 315 (733)
Q Consensus 244 ~l~~~~~------~~i~SF~~~~l~~l~~~~--p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~ 315 (733)
+++++++ ++||||++++|++++++. | .+++++ +..... . .+ ....+..+..++.++++++.
T Consensus 158 ~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p--~v~~~~-l~~~~~--~----~~--~~~~l~~~~~~a~~v~~~~~ 226 (302)
T cd08571 158 SLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTK--LVFRVL-DVDDTE--P----DT--LLSNLTEIKKFASGVLVPKS 226 (302)
T ss_pred HHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCC--ceEEEe-ecCCCc--C----CC--ChhHHHHHHHhcCccccChh
Confidence 9999864 489999999999999999 7 677775 322110 0 01 01135666778999999887
Q ss_pred ccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHHHHHHHhc--CCcccceEEecCCCCcccc
Q 004721 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN--GDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 316 ~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~~~~l~~~--G~~~VDgIiTD~P~~~~~~ 391 (733)
.+.+.....+...++++|++||++|++|++||||++ ....|.+..|+..++.+++.. | |||||||+|++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~g---VDGiiTD~P~~~~~~ 302 (302)
T cd08571 227 YIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNS---VDGVITDFPATAARA 302 (302)
T ss_pred HeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCC---CCEEEecCchhhhcC
Confidence 776533223334446899999999999999999997 456788878888899999987 8 999999999988653
No 5
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=1.1e-50 Score=429.50 Aligned_cols=296 Identities=50% Similarity=0.786 Sum_probs=238.0
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccc-ccccccccCcc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITT-TIPEIMAGSGI 486 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~-~~~~~~~~~g~ 486 (733)
|+||||||+++.+||||++||++|+++|||+||||||+||||++||+||.+|+|+||++.. |+.|+. +.+++.++.|+
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~-~~~~~~~~~~~~~~~~g~ 79 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASV-FPKRKKTYVVEGQSTSGI 79 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCcccccc-cccccceecccCcccCCe
Confidence 5799999999999999999999999999999999999999999999999999999998763 666655 46788888997
Q ss_pred cccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHH
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (733)
+|.++|++||++|+++...+|.. .++++.+.++++||||+|+|++++.... .+++||||.+.......+..+++.++
T Consensus 80 ~v~d~T~aeL~~l~~~~~~~~~~--~~~~~~~~~~~~IptL~evl~~~~~~~~-~~l~iEiK~~~~~~~~~~~~~~~~v~ 156 (302)
T cd08571 80 FSFDLTWAEIQTLKPIISNPFSV--LFRNPRNDNAGKILTLEDFLTLAKPKSL-SGVWINVENAAFLAEHKGLLSVDAVL 156 (302)
T ss_pred eeeeCCHHHHhhCcccccCcccc--cCCCcccCCCCCcCCHHHHHHhhhccCC-ceEEEEccCchhhhhhccccHHHHHH
Confidence 79999999999999864333211 2345566666799999999999997532 27999999765432112346889999
Q ss_pred HHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc---cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCC-cc
Q 004721 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK---TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN-SA 642 (733)
Q Consensus 567 ~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~---p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~-~~ 642 (733)
++++++++... .++|+|+||++.+|++++++ |.++++++++....+.....+..+..+|++++++...+.+.. ..
T Consensus 157 ~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~~~~~~~~~~ 235 (302)
T cd08571 157 TSLSKAGYDQT-AKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDS 235 (302)
T ss_pred HHHHHcCCCCC-CCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcCCCChhHHHHHHHhcCccccChhHeeecCCCC
Confidence 99999988521 15999999999999999987 788888887543222223446777888899988776666532 13
Q ss_pred ccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhc-CcCEEEeCChHHHHHH
Q 004721 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGA-GIDGVITEFPMTAARY 708 (733)
Q Consensus 643 ~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~-GVdgIiTD~P~~~~~~ 708 (733)
+....+++|+.+|++|++|++||+|++...+++.|+.|+..++.+++..+ ||||||||+|+++.+|
T Consensus 236 ~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~gVDGiiTD~P~~~~~~ 302 (302)
T cd08571 236 FLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNSVDGVITDFPATAARA 302 (302)
T ss_pred cccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCCCCEEEecCchhhhcC
Confidence 33445689999999999999999999988889999999999999998454 9999999999998764
No 6
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=2e-49 Score=421.29 Aligned_cols=285 Identities=31% Similarity=0.471 Sum_probs=234.7
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccc--cccccccccccCCCCC
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ--IFKTQQKNYLVNGVPT 169 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~--~~~~~~~~~~~~g~~~ 169 (733)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||.+|+|||++.+ .|++|++++.++|.+.
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~ 78 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGAD--FIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNV 78 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCccc
Confidence 679999999999999999999999999999 999999999999999999999999999977 5888888899999999
Q ss_pred CccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--------CCceEeeccCchhhhh-cCCcHHHH
Q 004721 170 PGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYAQ-HNLSMRSF 240 (733)
Q Consensus 170 ~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--------~~~l~iEiK~~~~~~~-~~~~~~~~ 240 (733)
.||.|.++||+||++|+++.++....+.|.+ .++||||+|+|++++ +++++||||.+..... .+..+++.
T Consensus 79 ~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 157 (309)
T cd08602 79 TGWFTEDFTLAELKTLRARQRLPYRDQSYDG-QFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDK 157 (309)
T ss_pred CCeeeccCCHHHHhhCccCCcCcccCcccCC-CcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCHHHH
Confidence 9989999999999999999887654455666 569999999999985 3579999997654322 34578999
Q ss_pred HHHHHhhcCC------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCc--cCC--CCCcchhHHHh--hHHHHHhhcc
Q 004721 241 VLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSE--IEP--TTNQTYGSLLK--NLTFIKTFAS 308 (733)
Q Consensus 241 v~~~l~~~~~------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~--~~~--~~~~~~~~~~~--~l~~~~~~a~ 308 (733)
++++++++++ ++|+|||+++|++++++. +.++++++..... ..+ ..+..|.++.. .++.+..++.
T Consensus 158 v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (309)
T cd08602 158 LLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT---DLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYAD 234 (309)
T ss_pred HHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh---CCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhhce
Confidence 9999999875 389999999999999987 3577763322111 000 11234443322 4566667888
Q ss_pred cccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 309 ~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
+++|++..+.+....+....++++|+.||++|++|++||||++ ...+++|..|+.++|++++++| |||||||+|
T Consensus 235 ~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---VdgiiTD~P 309 (309)
T cd08602 235 GIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFLDAG---VDGLFTDFP 309 (309)
T ss_pred EEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHHHhC---CCEEeCCCC
Confidence 9999988877654445566678999999999999999999987 4567888888889999999999 999999998
No 7
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=4.3e-48 Score=414.59 Aligned_cols=292 Identities=15% Similarity=0.137 Sum_probs=222.3
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCC-CCccccCccc--cccccccccccCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDL-KLDNASNIAQ--IFKTQQKNYLVNG 166 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~-~l~rtt~~~~--~~~~~~~~~~~~g 166 (733)
..++||||||+++.+||||++||+.|+++||| +||+|||+||||++||+||. +|+||||+.+ .|++++++..++|
T Consensus 15 ~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad--~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g 92 (356)
T cd08560 15 KTDFSIGHRGAPLQFPEHTRESYEAAARMGAG--ILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPA 92 (356)
T ss_pred CCceEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccc
Confidence 46789999999999999999999999999999 99999999999999999997 8999999986 6899999888888
Q ss_pred CC----CCccccccCCHHhhccccccccc-c---------------CCCCCCCCCCcccccHHHHHHhhC--CCceEeec
Q 004721 167 VP----TPGWFSIDYTLNDLSNIILNQGV-Y---------------SRTDKFDGNGFQILTVQDMARQIK--PPGLWLNI 224 (733)
Q Consensus 167 ~~----~~g~~v~d~T~~eL~~l~~~~~~-~---------------~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEi 224 (733)
.. .++|++.||||+||++|+++.+. . ++++.|++ +++||||+|+|++++ .++++|||
T Consensus 93 ~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~IPTL~Evl~lv~~~~v~l~iEi 171 (356)
T cd08560 93 NATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYAT-CGTLMTHKESIALFKSLGVKMTPEL 171 (356)
T ss_pred ccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccC-CCCCCCHHHHHHHHHhcCceEEEEe
Confidence 75 66799999999999999876321 0 23334555 689999999999996 47899999
Q ss_pred cCchhhhhc-C----CcHHHHHHHHHhhcCC----ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhH
Q 004721 225 QHDAFYAQH-N----LSMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS 295 (733)
Q Consensus 225 K~~~~~~~~-~----~~~~~~v~~~l~~~~~----~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (733)
|++...... + ..+++.++++++++++ ++||||+++.|++++++.|....++++ +.+..... . ..+.
T Consensus 172 K~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p~~~~~l~~-l~~~~~~~-~--~~~~- 246 (356)
T cd08560 172 KSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEPDFGRQAVY-LDDRDDTA-D--FPAT- 246 (356)
T ss_pred CCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCCCCCeeEEE-EccCCccc-c--cccc-
Confidence 977653221 1 1588999999999875 599999999999999998832223343 22221100 0 0111
Q ss_pred HHhhHHHH-HhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCc--c-c---------CCCCC
Q 004721 296 LLKNLTFI-KTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPI--S-F---------NYSYD 361 (733)
Q Consensus 296 ~~~~l~~~-~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~--~-~---------~~~~d 361 (733)
....++.+ +.++++++|++.++...+..+ ...++++|+.||++|++|++|||+++ .+. . + +...|
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~-~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPIWMLVDPDENG-KIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGD 325 (356)
T ss_pred HHHHHHHHHhCCccEecCchhhcccccccc-ccCCHHHHHHHHHcCCEEEEEEeecCcccccCccccccccccccccccc
Confidence 22356666 557889999988776543222 23568999999999999999999875 222 1 1 12334
Q ss_pred hHHHHHHHH-hcCCcccceEEecCCCCccccch
Q 004721 362 PLTEYLSFI-DNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 362 ~~~~~~~l~-~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
-.+++..++ ++| |||||||+|++...+.+
T Consensus 326 ~~~~~~~~~~~~G---vDGvftD~p~~~~~~~~ 355 (356)
T cd08560 326 MYNVLDVLARDVG---ILGIFSDWPATVTYYAN 355 (356)
T ss_pred HHHHHHHHHHhcC---CCEEEccCCCceeEecC
Confidence 456777776 688 99999999998876654
No 8
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=3.5e-48 Score=417.25 Aligned_cols=289 Identities=22% Similarity=0.319 Sum_probs=214.5
Q ss_pred CCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCC
Q 004721 90 DPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPT 169 (733)
Q Consensus 90 ~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~ 169 (733)
.+|+||||||+++.+||||++||++|++.|+| +||||||+||||++||+||.+|+|+|++.+.|+.+++. +
T Consensus 25 ~~pliiAHRGas~~~PENTl~Af~~A~~~GaD--~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~~~~---~---- 95 (355)
T PRK11143 25 AEKIVIAHRGASGYLPEHTLPAKAMAYAQGAD--YLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARK---D---- 95 (355)
T ss_pred CCcEEEECCCCCCCCCcchHHHHHHHHHcCCC--EEEEeeeEccCCcEEEeCCchhcccCCccccccccccc---C----
Confidence 47999999999999999999999999999999 99999999999999999999999999998888776653 1
Q ss_pred CccccccCCHHhhccccccccccC--------CCCCCC--CCCcccccHHHHHHhhC--------CCceEeeccCchhhh
Q 004721 170 PGWFSIDYTLNDLSNIILNQGVYS--------RTDKFD--GNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYA 231 (733)
Q Consensus 170 ~g~~v~d~T~~eL~~l~~~~~~~~--------~~~~~~--g~~~~iptL~e~l~~~~--------~~~l~iEiK~~~~~~ 231 (733)
++|+|.++||+||++|+++.+|.. ++..|. ..+++||||+|+|++++ +.+++||||.+....
T Consensus 96 g~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~~ 175 (355)
T PRK11143 96 GRYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHH 175 (355)
T ss_pred CceeEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCccccc
Confidence 346899999999999999987631 122222 01489999999999885 357999999865433
Q ss_pred hcCCcHHHHHHHHHhhcCC------ceeccCCHHHHHHHHH-hcCCC--cccchhhhcCCCccCC------C--CCcchh
Q 004721 232 QHNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRPS--MTKLVFRFLGKSEIEP------T--TNQTYG 294 (733)
Q Consensus 232 ~~~~~~~~~v~~~l~~~~~------~~i~SF~~~~l~~l~~-~~p~~--~~~~~~~l~~~~~~~~------~--~~~~~~ 294 (733)
..+.++++.++++++++++ ++|+||+++.|+++++ ..|.. +.++++++........ . .+..|.
T Consensus 176 ~~~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (355)
T PRK11143 176 QEGKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNYD 255 (355)
T ss_pred ccchhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccchh
Confidence 3344688999999999886 4899999999999998 66610 1366653321111100 0 011233
Q ss_pred HHH--hhHHHHHhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHH--
Q 004721 295 SLL--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI-- 370 (733)
Q Consensus 295 ~~~--~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~-- 370 (733)
++. ..+..+..++.+++|.+..+...+.......++++|+++|++|++|++||||++... .|..| .++|.+++
T Consensus 256 ~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~~~--~~~~d-~~~~~~~~~~ 332 (355)
T PRK11143 256 WMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQLP--EYATD-VNQLYDILYN 332 (355)
T ss_pred hhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEeccccch--hhhcC-hHHHHHHHHH
Confidence 321 145566667889998876554321122344567899999999999999999986321 23323 46776665
Q ss_pred hcCCcccceEEecCCCCccccch
Q 004721 371 DNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 371 ~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
++| |||||||+|+++++++.
T Consensus 333 ~~G---VDGIiTD~P~~~~~~l~ 352 (355)
T PRK11143 333 QAG---VDGVFTDFPDKAVKFLN 352 (355)
T ss_pred ccC---CCEEEcCChHHHHHHHh
Confidence 889 99999999999887764
No 9
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=7.9e-48 Score=409.09 Aligned_cols=286 Identities=30% Similarity=0.459 Sum_probs=230.5
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCc-CCCcccc-cccccccCc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSK-FNSITTT-IPEIMAGSG 485 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~-~~~r~~~-~~~~~~~~g 485 (733)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||+.... |++|+.+ .+++.+..|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~ 80 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG 80 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence 57999999999999999999999999999999999999999999999999999999976532 7777755 346666677
Q ss_pred ccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcC-----CCceEEEEecchhHHHhhcCCc
Q 004721 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN-----SLSGVLISIENAVYLAEKQGMS 560 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~-----~~~~l~iEiK~~~~~~~~~~~~ 560 (733)
+.|.++|++||++|+++.+.+. +++.+.+.++||||+|+|++++..+ + ++++||||.+....+..+..
T Consensus 81 ~~v~d~t~~eL~~l~~~~~~~~------~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~-~~l~iEiK~~~~~~~~~~~~ 153 (309)
T cd08602 81 WFTEDFTLAELKTLRARQRLPY------RDQSYDGQFPIPTFEEIIALAKAASAATGRT-VGIYPEIKHPTYFNAPLGLP 153 (309)
T ss_pred eeeccCCHHHHhhCccCCcCcc------cCcccCCCcCcCCHHHHHHHHHhhhhccccc-ceeEEeecCchhcccccCCC
Confidence 6799999999999999865431 2334555569999999999998752 2 48999999765432112357
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccc---h------------hhhHHHHHHHHH
Q 004721 561 VTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR---D------------ALNQTIEDIKKF 625 (733)
Q Consensus 561 ~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~---~------------~~~~~l~~i~~~ 625 (733)
++++|+++++++++... .++|+|+|||+++|++++++.++++++++..... + ..+..++.+..+
T Consensus 154 ~~~~v~~~l~~~~~~~~-~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (309)
T cd08602 154 MEDKLLETLKKYGYTGK-KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATY 232 (309)
T ss_pred HHHHHHHHHHHcCCCCC-CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhh
Confidence 89999999999998621 1499999999999999998877888988854321 0 122345666677
Q ss_pred HhHhcCCCcccccCC-ccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 626 ADSVVLSKESVYPLN-SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 626 a~~i~~~~~~i~~~~-~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
+++++++...+.+.. ...+..++++|+.+|++|++|++||+|++...++++|++|+.+++..++ ++||||||||+|
T Consensus 233 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~GVdgiiTD~P 309 (309)
T cd08602 233 ADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFL-DAGVDGLFTDFP 309 (309)
T ss_pred ceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHH-HhCCCEEeCCCC
Confidence 888888776665532 1234456799999999999999999999877888999999998999997 899999999998
No 10
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=6.2e-48 Score=408.61 Aligned_cols=280 Identities=22% Similarity=0.409 Sum_probs=216.6
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccc-cccccccccccCCCCCC
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQ-IFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~-~~~~~~~~~~~~g~~~~ 170 (733)
|+||||||+++.+||||++||+.|++.|+| +||||||+||||++||+||++|+||||+.+ .|+.++++. .+....+
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~-~~~~~~~ 77 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGAD--VIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTV-PEIGSTS 77 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCC--EEEEeeeEcCCCCEEEeccccccCcccCCccccccccccc-ccccccC
Confidence 679999999999999999999999999999 999999999999999999999999999987 777777763 3333467
Q ss_pred ccccccCCHHhhcccccccccc------CCCCCCCCCCcccccHHHHHHhhCC---CceEeeccCchhhh-hcCCcHHHH
Q 004721 171 GWFSIDYTLNDLSNIILNQGVY------SRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYA-QHNLSMRSF 240 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~------~~~~~~~g~~~~iptL~e~l~~~~~---~~l~iEiK~~~~~~-~~~~~~~~~ 240 (733)
||++.|+||+||++|+++..+. ++...|.+ +++||||+|+|++++. .+++||||.+.... ..+..+++.
T Consensus 78 ~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~-~~~iptL~Evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 156 (300)
T cd08604 78 GIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKN-AGKFLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDA 156 (300)
T ss_pred ceeeecCcHHHHhhCccCCcCcccccCcCCCcccCC-CCCCCCHHHHHHHHHhcCCceEEEEeeccchhhhccCccHHHH
Confidence 8899999999999999875322 23345665 6899999999999864 47999999765432 223468899
Q ss_pred HHHHHhhcCC-------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCC
Q 004721 241 VLSVSRSVVV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (733)
Q Consensus 241 v~~~l~~~~~-------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~ 313 (733)
++++++++++ ++|+||+++.|++++++. +.++++ +..... ..+. ...+..+..++++++++
T Consensus 157 v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~---~~~~~~-l~~~~~------~~~~--~~~~~~~~~~a~~v~~~ 224 (300)
T cd08604 157 VLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI---SYERVY-VVDETI------RDAS--DSSIEEIKKFADAVVID 224 (300)
T ss_pred HHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc---CCceEE-EecCcc------cccC--hhHHHHHHHhccEEEeC
Confidence 9999999876 389999999999999987 356665 322110 0110 11234555678888888
Q ss_pred ccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHH-HHHHHhcCCcccceEEecCCCCcccc
Q 004721 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTE-YLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~-~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
...+.+.. ...+...+++|++||++|++|++||||++ ...++.|..|+.++ ++++.++| |||||||+|++++++
T Consensus 225 ~~~~~~~~-~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~G---VdgIiTD~P~~~~~~ 300 (300)
T cd08604 225 RGSVFPVS-TSFLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAG---VDGFITEFPATAARY 300 (300)
T ss_pred hhhccccc-CCcccCchHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcC---CCEEEecCchhhhcC
Confidence 77665432 12222345899999999999999999986 45667777777545 44566889 999999999988653
No 11
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=5.2e-48 Score=412.11 Aligned_cols=279 Identities=26% Similarity=0.328 Sum_probs=209.3
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||++|+++|+| +||||||+||||++||+||.+|+||||+.+.++.+++. + ++
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~---~----g~ 71 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGAD--YLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRK---D----GR 71 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEeeeeECcCCcEEEeCCchhhccCCccccccccccc---C----Cc
Confidence 689999999999999999999999999999 99999999999999999999999999999888777654 2 23
Q ss_pred cccccCCHHhhccccccccccCC--------CCCC---CCCCcccccHHHHHHhhC--------CCceEeeccCchhhhh
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSR--------TDKF---DGNGFQILTVQDMARQIK--------PPGLWLNIQHDAFYAQ 232 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~--------~~~~---~g~~~~iptL~e~l~~~~--------~~~l~iEiK~~~~~~~ 232 (733)
|+|.++||+||++|+++.||... +..| .+ +++||||+|+|++++ .++++||||.+....+
T Consensus 72 ~~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~-~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~ 150 (318)
T cd08600 72 YYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKS-DFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ 150 (318)
T ss_pred eeEeeCcHHHHhhCCCCCCcccccccccccccccCcccCC-CCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhh
Confidence 68999999999999999987432 1122 12 579999999999874 4679999997654433
Q ss_pred cCCcHHHHHHHHHhhcCC------ceeccCCHHHHHHHHH-hcCC--CcccchhhhcCCCccCC-------CCCcchhHH
Q 004721 233 HNLSMRSFVLSVSRSVVV------NYISSPEVNFLRSIAA-RFRP--SMTKLVFRFLGKSEIEP-------TTNQTYGSL 296 (733)
Q Consensus 233 ~~~~~~~~v~~~l~~~~~------~~i~SF~~~~l~~l~~-~~p~--~~~~~~~~l~~~~~~~~-------~~~~~~~~~ 296 (733)
.+.++++.++++++++++ ++|+||++++|+++++ +.|. .++++++++........ ..+..|..+
T Consensus 151 ~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
T cd08600 151 EGKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWM 230 (318)
T ss_pred ccccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhh
Confidence 344689999999999986 5999999999999997 6760 02566653321111100 011234444
Q ss_pred H--hhHHHHHhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHH-H-HHHhc
Q 004721 297 L--KNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEY-L-SFIDN 372 (733)
Q Consensus 297 ~--~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~-~-~l~~~ 372 (733)
. .++..++.++++++|++..+.+.+.......++++|++||++|+.|++||||++....+. .+. .++ . .++++
T Consensus 231 ~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~--~~~-~~~~~~~l~~~ 307 (318)
T cd08600 231 FTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPEYA--KDA-DQLLDALLNKA 307 (318)
T ss_pred cCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCcccccc--CCH-HHHHHHHHHhc
Confidence 2 256677778999999988765432222233457899999999999999999987322211 122 233 2 25788
Q ss_pred CCcccceEEecCCC
Q 004721 373 GDFSVDGVLSDFPL 386 (733)
Q Consensus 373 G~~~VDgIiTD~P~ 386 (733)
| |||||||+|+
T Consensus 308 G---VDGiiTD~P~ 318 (318)
T cd08600 308 G---VDGVFTDFPD 318 (318)
T ss_pred C---CcEEEcCCCC
Confidence 9 9999999996
No 12
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=3.7e-47 Score=393.29 Aligned_cols=245 Identities=18% Similarity=0.190 Sum_probs=184.2
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|+||+.+
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~l~R~t~~~g------------------ 60 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGAD--AIWLTVQLSKDGVPVLYRPSDLKSLTNGSG------------------ 60 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeEECCCCCEEEeCCCchhcccCCCC------------------
Confidence 679999999999999999999999999999 999999999999999999999999999876
Q ss_pred cccccCCHHhhccccccccccCC-CCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSR-TDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~-~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~ 250 (733)
.|.++||+||++|+++.||... +..|.+.+++||||+|+|++++...++||||.+.. ..+++.++++|+++++
T Consensus 61 -~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i~~~~~ 134 (263)
T cd08580 61 -AVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPDTPFILDMKSLPA-----DPQAKAVARVLERENA 134 (263)
T ss_pred -ChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcCCeEEEEECCCCc-----HHHHHHHHHHHHhcCC
Confidence 7999999999999999987432 22355545799999999999988889999996532 1578899999999886
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCc-------ccchhhhcCCCccCCC-CCcchhHH-----HhhHHHHHhhcccccCCc
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSM-------TKLVFRFLGKSEIEPT-TNQTYGSL-----LKNLTFIKTFASGILVPK 314 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~-------~~~~~~l~~~~~~~~~-~~~~~~~~-----~~~l~~~~~~a~~i~~~~ 314 (733)
++|+||+++.|++++++.| + ....+ +......... ........ ...+.....++.+...
T Consensus 135 ~~~v~v~SF~~~~l~~~~~~~p--~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 209 (263)
T cd08580 135 WSRVRIYSTNADYQDALAPYPQ--ARLFESRDVTRTR-LANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTLGEGR-- 209 (263)
T ss_pred CCCEEEEECCHHHHHHHHhcCc--ccccccHHHHHHH-HHhhhcccccccCccchhhccccccccchheeeecccccc--
Confidence 4999999999999999987 2 22222 1110000000 00000000 0001111111111111
Q ss_pred cccccCCCccCCCCChHHHHHHHHc-CCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCc
Q 004721 315 DYIWPVDESLYLLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (733)
Q Consensus 315 ~~i~~~~~~~~~~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~ 388 (733)
+ + ..+...++++|+.+|++ |++|++||||++ ++|++|+++| |||||||+|+.+
T Consensus 210 --~-~---~~~~l~t~~~V~~~h~~~gl~V~~WTVN~~------------~~~~~l~~~G---VDgIiTD~P~~~ 263 (263)
T cd08580 210 --S-P---VQATLWTPAAVDCFRRNSKVKIVLFGINTA------------DDYRLAKCLG---ADAVMVDSPAAM 263 (263)
T ss_pred --c-c---cccccCCHHHHHHHHhcCCcEEEEEEeCCH------------HHHHHHHHcC---CCEEEeCCcccC
Confidence 0 0 01234468999999999 999999999875 8999999999 999999999974
No 13
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.5e-46 Score=402.74 Aligned_cols=302 Identities=15% Similarity=0.203 Sum_probs=222.9
Q ss_pred CcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecc-ccccccccCCCc-CCCccccc-cc
Q 004721 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI-NLINSTNAAQSK-FNSITTTI-PE 479 (733)
Q Consensus 403 ~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~-~L~rtt~v~~~~-~~~r~~~~-~~ 479 (733)
...+.++||||||+++.+||||++||+.|+++|||+||+|||+||||++||+||. +|+||||+...+ |++|+++. .+
T Consensus 12 ~~~~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~ 91 (356)
T cd08560 12 PFRKTDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTP 91 (356)
T ss_pred CCCCCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhccccccc
Confidence 3346789999999999999999999999999999999999999999999999997 899999987644 77777653 23
Q ss_pred ccc----cCcccccccCHHHHhccCcccc--CCCc--------cccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEE
Q 004721 480 IMA----GSGIFSFSLIWDEIQTLIPQIS--NPYF--------KFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLI 545 (733)
Q Consensus 480 ~~~----~~g~~i~d~T~~EL~~L~~~~~--~~~~--------~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~i 545 (733)
+.. ..+++|.|+|++||++|++... .+++ ++..++++.|.++++||||+|+|++++.. + ++++|
T Consensus 92 g~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~-~-v~l~i 169 (356)
T cd08560 92 ANATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSL-G-VKMTP 169 (356)
T ss_pred cccccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhc-C-ceEEE
Confidence 332 2345899999999999987532 1111 12234555666668999999999999875 3 48999
Q ss_pred EecchhHHHhhcC----CcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceE--EEEeecc-cch---h
Q 004721 546 SIENAVYLAEKQG----MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYEL--VYKVKEN-IRD---A 614 (733)
Q Consensus 546 EiK~~~~~~~~~~----~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~--~~l~~~~-~~~---~ 614 (733)
|||.+....+..+ ..++++++++++++++.. ++|+||||+++.|+++++. |++++ +++.+.. ..+ .
T Consensus 170 EiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~~~~~~~~ 246 (356)
T cd08560 170 ELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDDTADFPAT 246 (356)
T ss_pred EeCCCcccccccccccHHHHHHHHHHHHHHcCCCC---CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCcccccccc
Confidence 9997764221111 158899999999999763 5999999999999999888 97765 4443321 000 0
Q ss_pred hhHHHHHH-HHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCccccc--c-ccc---------CCCh
Q 004721 615 LNQTIEDI-KKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQ--A-WDF---------FSDP 681 (733)
Q Consensus 615 ~~~~l~~i-~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~--~-~~~---------~~d~ 681 (733)
-...++.+ +.++++|+|+...+.+.........+++|+.+|++|++|++||++++...+ + +.| .+|.
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDM 326 (356)
T ss_pred HHHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccH
Confidence 11235555 456778888776665542222235689999999999999999998764433 3 233 3344
Q ss_pred HHHHHHHHhhcCcCEEEeCChHHHHHHH
Q 004721 682 TVEINTYYEGAGIDGVITEFPMTAARYR 709 (733)
Q Consensus 682 ~~e~~~~l~~~GVdgIiTD~P~~~~~~l 709 (733)
..++..++.++|||||+||+|++...|.
T Consensus 327 ~~~~~~~~~~~GvDGvftD~p~~~~~~~ 354 (356)
T cd08560 327 YNVLDVLARDVGILGIFSDWPATVTYYA 354 (356)
T ss_pred HHHHHHHHHhcCCCEEEccCCCceeEec
Confidence 5566666568999999999999876553
No 14
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=1.7e-46 Score=398.51 Aligned_cols=274 Identities=30% Similarity=0.394 Sum_probs=204.8
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|++.||| +||||||+||||++||+||++|+|+||+...++.. |....|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~-------~~~~~~ 71 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGAD--YIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR-------GRKDTG 71 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCC--EEEEeeEEccCCCEEEeccchhhcCCCcccccccc-------ccCCCC
Confidence 689999999999999999999999999999 99999999999999999999999999988544332 334455
Q ss_pred cccccCCHHhhccccccccccCC----CCCCCCCCcccccHHHHHHhhCC--------CceEeeccCchhhhhcCCcHHH
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSR----TDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRS 239 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~----~~~~~g~~~~iptL~e~l~~~~~--------~~l~iEiK~~~~~~~~~~~~~~ 239 (733)
+.|.++||+||++++++.|+... ...+.. +++||||+|+|++++. ++++||||.+......+..+++
T Consensus 72 ~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~ 150 (296)
T cd08559 72 YFVIDFTLAELKTLRAGSWFNQRYPERAPSYYG-GFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEE 150 (296)
T ss_pred eeeecCcHHHHhcCCCCCcccccccccCccccC-CCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhhcCCCHHH
Confidence 68999999999999999875321 111122 4899999999999854 6799999976543233456899
Q ss_pred HHHHHHhhcCC------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHH--hhHHHHHhhccccc
Q 004721 240 FVLSVSRSVVV------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL--KNLTFIKTFASGIL 311 (733)
Q Consensus 240 ~v~~~l~~~~~------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~l~~~~~~a~~i~ 311 (733)
.|+++|+++++ ++|+||++++|++++++.| +.++++++.............|..+. ..+..++..+.+++
T Consensus 151 ~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p--~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 151 KLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETP--DIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCC--CCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 99999999864 4899999999999999998 77888743221111000001122221 13444555677888
Q ss_pred CCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHHHHHHHhc-CCcccceEEecCC
Q 004721 312 VPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTEYLSFIDN-GDFSVDGVLSDFP 385 (733)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~~~~l~~~-G~~~VDgIiTD~P 385 (733)
+.+..+.... ......++++|++||++|++|++||||++ .+..+ +..++|++++++ | |||||||+|
T Consensus 229 ~~~~~~~~~~-~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~----~~~~~~~~l~~~~G---VdgIiTD~P 296 (296)
T cd08559 229 PWKSLIIPED-SNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAP----DFKQDMDALYNAAG---VDGVFTDFP 296 (296)
T ss_pred CCHHhccccc-cccccCchHHHHHHHHcCCEEEEEEecCccccccc----ccccCHHHHHHHhC---CCEEEcCCC
Confidence 8776654221 11223347899999999999999999984 12111 223789999998 9 999999998
No 15
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=3.5e-46 Score=396.02 Aligned_cols=278 Identities=29% Similarity=0.353 Sum_probs=205.4
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||...... . ++....|..
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~-~------~~~~~~~~~ 73 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFP-F------RGRKDTGYF 73 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccccc-c------cccCCCCee
Confidence 679999999999999999999999999999999999999999999999999999999542110 0 011122338
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcC-----CCceEEEEecchhHHHhhcCCcHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN-----SLSGVLISIENAVYLAEKQGMSVT 562 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~-----~~~~l~iEiK~~~~~~~~~~~~~~ 562 (733)
|.++|++||++++++.|. ...+..+.+.+..+++||||+|+|++++.++ + ++++||||.+.... ..+..++
T Consensus 74 v~~~t~~eL~~l~~~~~~--~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~-~~l~IEiK~~~~~~-~~~~~~~ 149 (296)
T cd08559 74 VIDFTLAELKTLRAGSWF--NQRYPERAPSYYGGFKIPTLEEVIELAQGLNKSTGRN-VGIYPETKHPTFHK-QEGPDIE 149 (296)
T ss_pred eecCcHHHHhcCCCCCcc--cccccccCccccCCCCcCCHHHHHHHHHhhhhccCCc-ceEEEEecChhhhh-hcCCCHH
Confidence 999999999999998652 1112222222333589999999999998732 2 48999999865432 1235789
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccch-----------hhhHHHHHHHHHHhHhc
Q 004721 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD-----------ALNQTIEDIKKFADSVV 630 (733)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~-----------~~~~~l~~i~~~a~~i~ 630 (733)
+.|+++|+++++.. ..++|+|+||++++|+++|++ |++++++++...... .....+..++.++++++
T Consensus 150 ~~v~~~l~~~~~~~-~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 150 EKLLEVLKKYGYTG-KNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHHcCCCC-CCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 99999999998751 114899999999999999999 999999998653211 12233555555777777
Q ss_pred CCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhc-CcCEEEeCCh
Q 004721 631 LSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGA-GIDGVITEFP 702 (733)
Q Consensus 631 ~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~-GVdgIiTD~P 702 (733)
+....+..........++++|+.+|++|++|++||||++...++.+|. .++.+++ ++ ||||||||+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~----~~~~~l~-~~~GVdgIiTD~P 296 (296)
T cd08559 229 PWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFK----QDMDALY-NAAGVDGVFTDFP 296 (296)
T ss_pred CCHHhccccccccccCchHHHHHHHHcCCEEEEEEecCcccccccccc----cCHHHHH-HHhCCCEEEcCCC
Confidence 754443321111223458999999999999999999994222222221 2788887 88 9999999998
No 16
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=1e-45 Score=394.48 Aligned_cols=284 Identities=24% Similarity=0.280 Sum_probs=209.7
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+||++. .|++|+.. .+.+ +
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~-~~~~~~~~-----~g~~-~ 73 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE-KFPDRKRK-----DGRY-Y 73 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCccc-cccccccc-----CCce-e
Confidence 579999999999999999999999999999999999999999999999999999999664 35555432 1444 7
Q ss_pred ccccCHHHHhccCccccCCCc-cc----cccCCcCCCCCccccCHHHHHHHHHhcC----CCceEEEEecchhHHHhhcC
Q 004721 488 SFSLIWDEIQTLIPQISNPYF-KF----KLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYLAEKQG 558 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~-~~----~~~~~~~~~g~~~IptLeEvL~~~~~~~----~~~~l~iEiK~~~~~~~~~~ 558 (733)
|.++|++||++|+++.|.+.. +. +..+.+...++++||||+|+|++++... ..++++||||.+.... ..+
T Consensus 74 v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~-~~~ 152 (318)
T cd08600 74 VIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHH-QEG 152 (318)
T ss_pred EeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhh-hcc
Confidence 999999999999998763210 00 0111111123589999999999997621 1148999999765322 123
Q ss_pred CcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHh-c-c----CceEEEEeecc-cc----------------h-h
Q 004721 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-T----SYELVYKVKEN-IR----------------D-A 614 (733)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~-~-p----~~~~~~l~~~~-~~----------------~-~ 614 (733)
..+++.++++|+++++... .++|+|+||++++|+.+|+ . | ++++++++... .. . .
T Consensus 153 ~~~~~~v~~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T cd08600 153 KDIAAATLEVLKKYGYTSK-NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWMF 231 (318)
T ss_pred ccHHHHHHHHHHHcCCCCC-CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhhc
Confidence 4689999999999998521 1489999999999999996 7 9 99999998521 10 0 0
Q ss_pred hhHHHHHHHHHHhHhcCCCcccccCCc-cccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcC
Q 004721 615 LNQTIEDIKKFADSVVLSKESVYPLNS-AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG 693 (733)
Q Consensus 615 ~~~~l~~i~~~a~~i~~~~~~i~~~~~-~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~G 693 (733)
++..+..++.+|++++++...+.+... .+...++++|+.+|++|+.|++||||++... .|..+.......++.++|
T Consensus 232 ~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~---~~~~~~~~~~~~~l~~~G 308 (318)
T cd08600 232 TKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALP---EYAKDADQLLDALLNKAG 308 (318)
T ss_pred CHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCccc---cccCCHHHHHHHHHHhcC
Confidence 223466777888999887765544211 1223467999999999999999999998521 223333322233234899
Q ss_pred cCEEEeCChH
Q 004721 694 IDGVITEFPM 703 (733)
Q Consensus 694 VdgIiTD~P~ 703 (733)
|||||||+|+
T Consensus 309 VDGiiTD~P~ 318 (318)
T cd08600 309 VDGVFTDFPD 318 (318)
T ss_pred CcEEEcCCCC
Confidence 9999999995
No 17
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=4.8e-46 Score=393.59 Aligned_cols=251 Identities=11% Similarity=0.038 Sum_probs=192.3
Q ss_pred cccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcccccccccccccc
Q 004721 85 QTLTGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLV 164 (733)
Q Consensus 85 ~~~~~~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~ 164 (733)
.......|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||++|+||||+.+.++++...
T Consensus 16 ~~~~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~~~~~~~~--- 90 (316)
T cd08610 16 KETLGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAH--GLETDVTLSYDGVPFLMHDFTLKRTTNIGEVQPESACE--- 90 (316)
T ss_pred ccccCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEeCCCccccccCCCCcccccccc---
Confidence 3344567899999999999999999999999999999 99999999999999999999999999998765554331
Q ss_pred CCCCCCccccccCCHHhhccccccccccCCC-------------CCCCCCCcccccHHHHHHhhCC--CceEeeccCchh
Q 004721 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRT-------------DKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAF 229 (733)
Q Consensus 165 ~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~-------------~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~ 229 (733)
.|.++||+||++++++.||.... ..|.| ++||||+|+|+++++ ..++||||.+..
T Consensus 91 --------~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~--e~IPTLeEvL~~~~~~~~~l~IEIK~~~~ 160 (316)
T cd08610 91 --------NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN--QSIPKLSNFLRLAEKENKLVIFDLYRPPP 160 (316)
T ss_pred --------chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC--CCCCCHHHHHHHhHhcCceEEEEeCCCcc
Confidence 69999999999999999874211 12344 899999999999964 579999996421
Q ss_pred hhhcCCcHHHHHHHHH-hhcCCc--eeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHH-h
Q 004721 230 YAQHNLSMRSFVLSVS-RSVVVN--YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-T 305 (733)
Q Consensus 230 ~~~~~~~~~~~v~~~l-~~~~~~--~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~ 305 (733)
.......+++.+++.+ +++++. ++.||++..++++++..| +.+.++ ... . . +..+. .
T Consensus 161 ~~~~~~~~~~~v~~~i~~~~~~~~~~v~sf~~~~l~~~~~~~P--~~~~~l-~~~-~--------~-------~~~l~~~ 221 (316)
T cd08610 161 KHPYRHTWIRRVLEVILNEVGIEQHLVLWLPAHDRQYVQSVAP--GFKQHV-GRK-V--------P-------IETLLKN 221 (316)
T ss_pred cCcchhHHHHHHHHHHHHHcCCCCCEEEEcCHHHHHHHHHHCc--chhhhh-ccc-c--------c-------HHHHHHc
Confidence 1111113667777775 666763 556899999999999998 555442 110 0 0 01111 1
Q ss_pred hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 306 FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 306 ~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
.+.++++.+..+ ++++|+++|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 222 ~~~~l~~~~~~l-----------~~~~v~~a~~~Gl~V~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P 275 (316)
T cd08610 222 NISILNLAYKKL-----------FSNDIRDYKAANIHTNVYVINEP------------WLFSLAWCSG---IHSVTTNNI 275 (316)
T ss_pred CCeEEccchhhC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhCC---cCEEEeCCH
Confidence 344555554333 47899999999999999999875 8899999999 999999999
Q ss_pred CCccccchhc
Q 004721 386 LTPSAAVDCF 395 (733)
Q Consensus 386 ~~~~~~l~~~ 395 (733)
+.+.++.+..
T Consensus 276 ~~l~~~~~~~ 285 (316)
T cd08610 276 HLLKQLDHPH 285 (316)
T ss_pred HHHHHhhchh
Confidence 9887665444
No 18
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=3.9e-45 Score=393.63 Aligned_cols=297 Identities=23% Similarity=0.293 Sum_probs=219.4
Q ss_pred CcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccc
Q 004721 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMA 482 (733)
Q Consensus 403 ~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~ 482 (733)
....+|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+||+.. .|+.|++. .
T Consensus 22 ~~~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~-~~~~~~~~-----~ 95 (355)
T PRK11143 22 ADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAE-RFPDRARK-----D 95 (355)
T ss_pred hcCCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCccc-cccccccc-----C
Confidence 35678999999999999999999999999999999999999999999999999999999999654 35555532 1
Q ss_pred cCcccccccCHHHHhccCccccCCCc-c----ccccCCcCCCCCccccCHHHHHHHHHhcC----CCceEEEEecchhHH
Q 004721 483 GSGIFSFSLIWDEIQTLIPQISNPYF-K----FKLFRNPKNKNAGKFMKLSDFLEMAKNAN----SLSGVLISIENAVYL 553 (733)
Q Consensus 483 ~~g~~i~d~T~~EL~~L~~~~~~~~~-~----~~~~~~~~~~g~~~IptLeEvL~~~~~~~----~~~~l~iEiK~~~~~ 553 (733)
+.+ +|.++||+||++|+++.+.... + .+..+.+.+..+++||||+|+|++++... ..++++||||.+...
T Consensus 96 g~~-~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~ 174 (355)
T PRK11143 96 GRY-YAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFH 174 (355)
T ss_pred Cce-eEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCcccc
Confidence 344 7999999999999998642210 0 01112222223589999999999998631 114799999986432
Q ss_pred HhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHh-c-cC----ceEEEEeecc-cc--------------
Q 004721 554 AEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLRE-K-TS----YELVYKVKEN-IR-------------- 612 (733)
Q Consensus 554 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~-~-p~----~~~~~l~~~~-~~-------------- 612 (733)
. ..+..++++++++|+++++... .++|+|+||+++.|+.+++ . |+ +++++++... ..
T Consensus 175 ~-~~~~~~~~~v~~~l~~~g~~~~-~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (355)
T PRK11143 175 H-QEGKDIAAKVLEVLKKYGYTGK-DDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNY 252 (355)
T ss_pred c-ccchhHHHHHHHHHHHhCCCCC-CCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCccccc
Confidence 1 1234689999999999998421 1589999999999999988 6 87 4888886421 00
Q ss_pred ---h-hhhHHHHHHHHHHhHhcCCCcccccC-CccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHH
Q 004721 613 ---D-ALNQTIEDIKKFADSVVLSKESVYPL-NSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINT 687 (733)
Q Consensus 613 ---~-~~~~~l~~i~~~a~~i~~~~~~i~~~-~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~ 687 (733)
+ .++..+..+..+++++.|....+.+. ...++..++++|+++|++|+.|++||||++. ++ .|..|+. ++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~--~~-~~~~d~~-~~~~ 328 (355)
T PRK11143 253 NYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQ--LP-EYATDVN-QLYD 328 (355)
T ss_pred chhhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEecccc--ch-hhhcChH-HHHH
Confidence 0 01123555666777887755434321 2234455679999999999999999999873 33 6777766 4444
Q ss_pred H-HhhcCcCEEEeCChHHHHHHHHhh
Q 004721 688 Y-YEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 688 ~-l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
+ +.++||||||||+|+++.+++.+.
T Consensus 329 ~~~~~~GVDGIiTD~P~~~~~~l~~~ 354 (355)
T PRK11143 329 ILYNQAGVDGVFTDFPDKAVKFLNKQ 354 (355)
T ss_pred HHHHccCCCEEEcCChHHHHHHHhcC
Confidence 4 349999999999999999988653
No 19
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=4.4e-46 Score=385.31 Aligned_cols=238 Identities=19% Similarity=0.172 Sum_probs=183.4
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|+||||||+++.+||||++||++|+++|+|+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~------------------~~g-~ 61 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTN------------------GSG-A 61 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccC------------------CCC-C
Confidence 579999999999999999999999999999999999999999999999999999999 778 8
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCC-CccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKN-AGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVM 566 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g-~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 566 (733)
|.++||+||++|+++.|.... ....|.+ +++||||+|+|+++++. .++||||.+.. ..+++.++
T Consensus 62 v~~~t~~el~~ld~g~~~~~~-----~~~~~~~~~~~iPtL~evl~~~~~~----~l~iEiK~~~~------~~~~~~v~ 126 (263)
T cd08580 62 VSAYTAAQLATLNAGYNFKPE-----GGYPYRGKPVGIPTLEQVLRAFPDT----PFILDMKSLPA------DPQAKAVA 126 (263)
T ss_pred hhhCcHHHHhcCCCccccccc-----cCcccCCCCCcCccHHHHHHhhcCC----eEEEEECCCCc------HHHHHHHH
Confidence 999999999999998653210 0111332 36899999999999764 79999997532 15788999
Q ss_pred HHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cC-------ceEEEEeecccch---hh-----------hHHHHHHHH
Q 004721 567 EALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TS-------YELVYKVKENIRD---AL-----------NQTIEDIKK 624 (733)
Q Consensus 567 ~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~-------~~~~~l~~~~~~~---~~-----------~~~l~~i~~ 624 (733)
++|+++++. ++|+++|||+..|+.+++. |+ ++++++....... .. ...+..+..
T Consensus 127 ~~i~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T cd08580 127 RVLERENAW----SRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVET 202 (263)
T ss_pred HHHHhcCCC----CCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheee
Confidence 999999998 8999999999999999999 85 3333332110000 00 000000000
Q ss_pred HHhHhcCCCcccccCCccccccchHHHHHHHHC-CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChH
Q 004721 625 FADSVVLSKESVYPLNSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (733)
Q Consensus 625 ~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~-Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~ 703 (733)
+ ........+ .+...++++|+.+|++ |++|++||||++. +|.+++ ++||||||||+|+
T Consensus 203 ~----~~~~~~~~~---~~~l~t~~~V~~~h~~~gl~V~~WTVN~~~-------------~~~~l~-~~GVDgIiTD~P~ 261 (263)
T cd08580 203 F----TLGEGRSPV---QATLWTPAAVDCFRRNSKVKIVLFGINTAD-------------DYRLAK-CLGADAVMVDSPA 261 (263)
T ss_pred e----ccccccccc---ccccCCHHHHHHHHhcCCcEEEEEEeCCHH-------------HHHHHH-HcCCCEEEeCCcc
Confidence 0 011111111 2234579999999999 9999999999997 899997 9999999999998
Q ss_pred H
Q 004721 704 T 704 (733)
Q Consensus 704 ~ 704 (733)
.
T Consensus 262 ~ 262 (263)
T cd08580 262 A 262 (263)
T ss_pred c
Confidence 5
No 20
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=8.1e-45 Score=386.30 Aligned_cols=255 Identities=17% Similarity=0.238 Sum_probs=194.5
Q ss_pred cCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccccc
Q 004721 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~ 483 (733)
+...|.||||||+++.+||||++||+.|+++|||+||+|||+||||++||+||.+++|+|| +
T Consensus 23 ~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~------------------~ 84 (300)
T cd08612 23 SPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCG------------------V 84 (300)
T ss_pred cCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCC------------------C
Confidence 3567899999999999999999999999999999999999999999999999999999999 7
Q ss_pred CcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHH
Q 004721 484 SGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTN 563 (733)
Q Consensus 484 ~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~ 563 (733)
+| .|.++|++||++++.+....++ .+.++.+.+. +++||||+|+|+.+++. .++||||.+. ..+++
T Consensus 85 ~g-~V~~~t~~eL~~l~~~~~~~~~-~~~~~~~~~~-g~~IPtL~EvL~~~~~~----~lnIEiK~~~-------~~~~~ 150 (300)
T cd08612 85 DK-LVSDLNYADLPPYLEKLEVTFS-PGDYCVPKGS-DRRIPLLEEVFEAFPDT----PINIDIKVEN-------DELIK 150 (300)
T ss_pred Cc-ccccCCHHHHhhcccccccccc-CCccccccCC-CCCCCCHHHHHHhCCCC----eEEEEECCCc-------hHHHH
Confidence 77 7999999999999653210010 0122234455 48999999999998543 8999999753 14778
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchh-------------hhHHH------HHHH
Q 004721 564 SVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDA-------------LNQTI------EDIK 623 (733)
Q Consensus 564 ~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~-------------~~~~l------~~i~ 623 (733)
.++++++++++. ++|+++|||++.|+.+++. |++++++++....... ..... ....
T Consensus 151 ~v~~~i~~~~~~----~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (300)
T cd08612 151 KVSDLVRKYKRE----DITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLK 226 (300)
T ss_pred HHHHHHHHcCCC----CcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhhhh
Confidence 999999999988 8999999999999999999 9999998754210000 00000 0000
Q ss_pred HHHhH--hcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 624 KFADS--VVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 624 ~~a~~--i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
.+... .......+++. .+...++++|+.+|++|++|++||||++. +|.+++ ++||||||||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~ 290 (300)
T cd08612 227 TYFPKSMSRLNRFVLFLI--DWLLMRPSLFRHLQKRGIQVYGWVLNDEE-------------EFERAF-ELGADGVMTDY 290 (300)
T ss_pred hcccccccccccceeccc--ccccCCHHHHHHHHHCCCEEEEeecCCHH-------------HHHHHH-hcCCCEEEeCC
Confidence 00000 00000011111 22345789999999999999999999997 899997 99999999999
Q ss_pred hHHHHHHHH
Q 004721 702 PMTAARYRS 710 (733)
Q Consensus 702 P~~~~~~l~ 710 (733)
|+.+.+++.
T Consensus 291 P~~l~~~l~ 299 (300)
T cd08612 291 PTKLREFLD 299 (300)
T ss_pred HHHHHHHHh
Confidence 999998765
No 21
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=7e-45 Score=379.35 Aligned_cols=248 Identities=23% Similarity=0.230 Sum_probs=197.3
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccccc--Ccc
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG--SGI 486 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~--~g~ 486 (733)
+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| + +|
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~------------------~~~~g- 62 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTN------------------IERPG- 62 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccC------------------CCCCc-
Confidence 58999999999999999999999999999999999999999999999999999999 4 56
Q ss_pred cccccCHHHHhccCccccCCCccccc-cCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHH
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKL-FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~-~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (733)
.|.++|++||++++++.+.. ..++ .++..+. +++||||+|+|+++++. .+++||||.+... ..+++.+
T Consensus 63 ~v~~~t~~el~~l~~~~~~~--~~~~~~~~~~~~-~~~iptL~evl~~~~~~---~~l~IEiK~~~~~-----~~~~~~v 131 (256)
T cd08601 63 PVKDYTLAEIKQLDAGSWFN--KAYPEYARESYS-GLKVPTLEEVIERYGGR---ANYYIETKSPDLY-----PGMEEKL 131 (256)
T ss_pred eeecCcHHHHHhcCCCcccc--ccCccccccccC-CccCCCHHHHHHHhccC---ceEEEEeeCCCCC-----CCHHHHH
Confidence 79999999999999875421 1111 1223344 48999999999999875 4899999975421 2578899
Q ss_pred HHHHHHcCCCCCC--CceEEEEeCCHHHHHHHHhc-cCceEEEEeecccc-hhhhHHHHHHHHHHhHhcCCCcccccCCc
Q 004721 566 MEALGNAGYNKQT--ALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-DALNQTIEDIKKFADSVVLSKESVYPLNS 641 (733)
Q Consensus 566 ~~~l~~~~~~~~~--~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~-~~~~~~l~~i~~~a~~i~~~~~~i~~~~~ 641 (733)
+++++++++.... .++|+|+||++++|++++++ |+++++++++.... ......++.+..++.++++.
T Consensus 132 ~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 202 (256)
T cd08601 132 LATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGIGPS--------- 202 (256)
T ss_pred HHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeEeCCc---------
Confidence 9999999875210 15899999999999999999 99999999764321 11112233333333333321
Q ss_pred cccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 642 ~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
+...++++++.+|++|++|++||+|+.+ ++.+++ ++||||||||+|+.++++++
T Consensus 203 -~~~~~~~~v~~~~~~g~~v~~wTvn~~~-------------~~~~l~-~~Gvd~IiTD~p~~~~~~~~ 256 (256)
T cd08601 203 -IADADPWMVHLIHKKGLLVHPYTVNEKA-------------DMIRLI-NWGVDGMFTNYPDRLKEVLK 256 (256)
T ss_pred -hhhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEeCCHHHHHHhhC
Confidence 1223689999999999999999999987 888887 99999999999999988763
No 22
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=5e-45 Score=378.31 Aligned_cols=233 Identities=14% Similarity=0.102 Sum_probs=181.7
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
+|.||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||++|+||||+.+.++.+...
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~~~~--------- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVY--GLETDVTISYDGVPFLMHDRTLRRTTNVADVFPERAHE--------- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEccCCcEEEeCCCcccccCCCCccccccccc---------
Confidence 4789999999999999999999999999999 99999999999999999999999999998755543321
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCC
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNL 235 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~-------------~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~ 235 (733)
.|.++||+||++|+++.||....+ .|.| ++||||+|+|++++ +..++||||.+........
T Consensus 70 --~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~--~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~ 145 (252)
T cd08574 70 --RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN--QSIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQ 145 (252)
T ss_pred --chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC--CCCCCHHHHHHHHHHcCCeEEEEecCCcccCccHH
Confidence 689999999999999998743211 3455 89999999999996 4679999996431111112
Q ss_pred cHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccC
Q 004721 236 SMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILV 312 (733)
Q Consensus 236 ~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~ 312 (733)
.+++.++++++++++ .+++||+.. +++++++.| +.++++ +.. . ... .+.. ..+.++++
T Consensus 146 ~~~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~p--~~~~~~-~~~-~--------~~~----~~~~--~~~~~~~~ 206 (252)
T cd08574 146 SYVNITLDTILASGIPQHQVFWLPDEY-RALVRKVAP--GFQQVS-GRK-L--------PVE----SLRE--NGISRLNL 206 (252)
T ss_pred HHHHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHCC--CCeEee-ccc-c--------chH----HHHh--cCCeEEcc
Confidence 478899999999987 256566654 799999998 566554 111 0 001 0111 13455665
Q ss_pred CccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 313 PKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
.+..+ ++++|+.+|++|++|++||||++ ++|++++++| |||||||
T Consensus 207 ~~~~~-----------~~~~v~~~~~~g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD 251 (252)
T cd08574 207 EYSQL-----------SAQEIREYSKANISVNLYVVNEP------------WLYSLLWCSG---VQSVTTN 251 (252)
T ss_pred CcccC-----------CHHHHHHHHHCCCEEEEEccCCH------------HHHHHHHHcC---CCEEecC
Confidence 54433 47899999999999999999875 8999999999 9999999
No 23
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=7.9e-45 Score=378.94 Aligned_cols=237 Identities=22% Similarity=0.287 Sum_probs=190.5
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCc--cccccccccccccCCCCCC
Q 004721 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNI--AQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 93 ~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~--~~~~~~~~~~~~~~g~~~~ 170 (733)
+||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||++|+|+|++ .+
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d--~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~g----------------- 62 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGAD--YIELDLQMTKDGVLVAMHDETLDRTTNIERPG----------------- 62 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCC--EEEEEeeECCCCeEEEeCCCccccccCCCCCc-----------------
Confidence 58999999999999999999999999999 9999999999999999999999999998 54
Q ss_pred ccccccCCHHhhccccccccccCC-----CCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHH
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSR-----TDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSV 244 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~-----~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~ 244 (733)
.|.++||+||++++++.+|... +..+.+ ++||||+|+|++++. .+++||||.+... ..+++.++++
T Consensus 63 --~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~iptL~evl~~~~~~~~l~IEiK~~~~~----~~~~~~v~~~ 134 (256)
T cd08601 63 --PVKDYTLAEIKQLDAGSWFNKAYPEYARESYSG--LKVPTLEEVIERYGGRANYYIETKSPDLY----PGMEEKLLAT 134 (256)
T ss_pred --eeecCcHHHHHhcCCCccccccCccccccccCC--ccCCCHHHHHHHhccCceEEEEeeCCCCC----CCHHHHHHHH
Confidence 7999999999999998876421 112334 899999999999964 7899999965322 2478889999
Q ss_pred HhhcCC---------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCcc
Q 004721 245 SRSVVV---------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKD 315 (733)
Q Consensus 245 l~~~~~---------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~ 315 (733)
++++++ ++|+||+++++++++++.| ..++++++..... . ..... .+..+...+.++++...
T Consensus 135 l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~-~----~~~~~---~~~~~~~~~~~~~~~~~ 204 (256)
T cd08601 135 LDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNP--NIPLVQLLWYGEG-A----ETYDK---WLDEIKEYAIGIGPSIA 204 (256)
T ss_pred HHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCC--CCcEEEEeccCcc-c----ccchh---HHHHHHhcCeEeCCchh
Confidence 999854 4899999999999999998 6777763322111 0 00111 12333335556666543
Q ss_pred ccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccc
Q 004721 316 YIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAV 392 (733)
Q Consensus 316 ~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l 392 (733)
.+ ++++++.+|++|++|++||||+. ++|++++++| |||||||+|+.+++++
T Consensus 205 ~~-----------~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~l~~~G---vd~IiTD~p~~~~~~~ 255 (256)
T cd08601 205 DA-----------DPWMVHLIHKKGLLVHPYTVNEK------------ADMIRLINWG---VDGMFTNYPDRLKEVL 255 (256)
T ss_pred hc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEeCCHHHHHHhh
Confidence 22 47899999999999999999864 8999999999 9999999999887765
No 24
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=5.7e-45 Score=389.21 Aligned_cols=243 Identities=13% Similarity=0.079 Sum_probs=187.3
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
+|+||||||+++.+||||++||++|+++||| +||+|||+||||++||+||++|+||||+.+.++++...
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD--~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~v~~~~~~--------- 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVY--GLQADVTISLDGVPFLMHDRTLRRTTNVDRVFPERQYE--------- 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCC--EEEEEeeEccCCcEEEECCCccccccCCCCcccccccc---------
Confidence 4789999999999999999999999999999 99999999999999999999999999999866554432
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCC
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~-------------~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~ 235 (733)
.++++||+||++|++|.||....+ .+.| ++||||+|+|+++++ ..++||||.+........
T Consensus 70 --~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~g--e~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~~~~~ 145 (351)
T cd08608 70 --DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGN--QSVCSLAELLELAKRYNASVLLNLRRPPPNHPYHQ 145 (351)
T ss_pred --ccccCCHHHHhhCCCCcccccCCccccccccccccccccCC--CCCCCHHHHHHHHHhcCCeEEEEECCCcccCcchh
Confidence 578999999999999998742211 3444 899999999999964 578999996421111112
Q ss_pred cHHHHHHHHHhhcCC----ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHH-hhcccc
Q 004721 236 SMRSFVLSVSRSVVV----NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGI 310 (733)
Q Consensus 236 ~~~~~v~~~l~~~~~----~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~i 310 (733)
.+++.+++++++++. ++++||+. +++++++.| +.+... .... ....+. ..+.++
T Consensus 146 ~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~P--~~~~~~--~~~~---------------~~~~~~~~~~~~l 204 (351)
T cd08608 146 SWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVAP--GFQQTS--GEKL---------------PVASLRERGITRL 204 (351)
T ss_pred HHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHCC--CCeeec--cccc---------------hHHHHHHcCCeEE
Confidence 467788888888875 35578876 478999988 454321 0000 001111 134456
Q ss_pred cCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccc
Q 004721 311 LVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSA 390 (733)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~ 390 (733)
++.+..+ ++++|+++|++|++|++||||++ ++|++++++| |||||||+|+++++
T Consensus 205 ~~~~~~l-----------t~~~v~~~~~~Gl~V~vWTVN~~------------~~~~~l~~~G---VdgIiTD~P~~l~~ 258 (351)
T cd08608 205 NLRYTQA-----------SAQEIRDYSASNLSVNLYTVNEP------------WLYSLLWCSG---VPSVTSDASHVLRK 258 (351)
T ss_pred ccchhhc-----------CHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEECCHHHHHH
Confidence 6655433 47899999999999999999875 8899999999 99999999999887
Q ss_pred cchhc
Q 004721 391 AVDCF 395 (733)
Q Consensus 391 ~l~~~ 395 (733)
.....
T Consensus 259 l~~~~ 263 (351)
T cd08608 259 VPFPL 263 (351)
T ss_pred hhhhh
Confidence 65443
No 25
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=7.5e-45 Score=384.83 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=189.7
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
+|.||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||++|+||||+.+.++...
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD--~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~~~~~~----------- 92 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVV--VFETDVMVSKDGVPFLMHDEGLLRTTNVKDVFPGRD----------- 92 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEeCCCcccccCCCCCCccccc-----------
Confidence 4789999999999999999999999999999 999999999999999999999999999876322111
Q ss_pred ccccccCCHHhhccccccccccCCCC-------------CCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCC
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTD-------------KFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNL 235 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~-------------~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~ 235 (733)
.+.|.++||+||++++++.||....+ .+. +++||||+|+|+++++ ..++||||.+........
T Consensus 93 ~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~--ge~IPTL~EvL~~~~~~~~~l~IEIK~~~~~~~~~~ 170 (315)
T cd08609 93 AAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREAD--NQTVPSLSELLDLAKKHNVSIMFDLRNENNSHVFYS 170 (315)
T ss_pred cccHhhCCHHHHhhCCCCcccCcccccccccccccccccccC--CCCCCCHHHHHHHHHhcCCEEEEEeCCCCCCCccHH
Confidence 12599999999999999988743211 233 4899999999999864 679999996421111112
Q ss_pred cHHHHHHHHHhhcCCc--eeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCC
Q 004721 236 SMRSFVLSVSRSVVVN--YISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (733)
Q Consensus 236 ~~~~~v~~~l~~~~~~--~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~ 313 (733)
.+++.+++.++++++. .+.+|++..+++++++.| +.+.++. .. . ......+.++++.
T Consensus 171 ~f~~~vl~~i~~~~~~~~~v~~~~~~~l~~~~~~~P--~~~~~~~-~~-~-----------------~~~~~~~~~i~~~ 229 (315)
T cd08609 171 SFVFYTLETILKLGIPPDKVWWLPDEYRHDVMKMEP--GFKQVYG-RQ-K-----------------EMLMDGGNFMNLP 229 (315)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeCHHHHHHHHHhCc--Cceeecc-cc-h-----------------hhHhcCCeEEecc
Confidence 5778899999999853 344678899999999998 5665531 10 0 0001134445554
Q ss_pred ccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccch
Q 004721 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
+..+ ++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+++.+.++
T Consensus 230 ~~~l-----------~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VDgIiTD~P~~l~~~~~ 283 (315)
T cd08609 230 YQDL-----------SALEIKELRKDNVSVNLWVVNEP------------WLFSLLWCSG---VSSVTTNACQLLKDMSK 283 (315)
T ss_pred cccC-----------CHHHHHHHHHCCCEEEEECCCCH------------HHHHHHHhcC---CCEEEcCCHHHHHHhhh
Confidence 4333 47899999999999999999875 8999999999 99999999999888877
Q ss_pred hcc
Q 004721 394 CFA 396 (733)
Q Consensus 394 ~~~ 396 (733)
.+.
T Consensus 284 ~~~ 286 (315)
T cd08609 284 PIW 286 (315)
T ss_pred hhh
Confidence 654
No 26
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=3.3e-44 Score=372.11 Aligned_cols=237 Identities=17% Similarity=0.109 Sum_probs=185.6
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCc
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSG 485 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g 485 (733)
+.|.+|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+|+|+|| ++|
T Consensus 6 ~~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~------------------~~~ 67 (249)
T PRK09454 6 PYPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSN------------------GWG 67 (249)
T ss_pred CCCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCC------------------CCC
Confidence 35899999999999999999999999999999999999999999999999999999999 667
Q ss_pred ccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHH
Q 004721 486 IFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSV 565 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 565 (733)
.|.++||+||++++++.+. .+.+. +++||||+|+|+++++. + +.++||||...... ..+.+.+
T Consensus 68 -~v~~~t~~el~~l~~~~~~---------~~~~~-~~~iPtL~evl~~~~~~-~-~~l~iEiK~~~~~~----~~~~~~v 130 (249)
T PRK09454 68 -VAGELTWQDLAQLDAGSWF---------SAAFA-GEPLPTLSQVAARCRAH-G-MAANIEIKPTTGRE----AETGRVV 130 (249)
T ss_pred -chhhCCHHHHHhcCCCCcc---------CCCCC-CCcCCCHHHHHHHHHhc-C-CEEEEEECCCCCcc----hhHHHHH
Confidence 7999999999999987542 23455 48999999999999764 3 37999999643211 1233334
Q ss_pred HHHHHHc--CCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcc
Q 004721 566 MEALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSA 642 (733)
Q Consensus 566 ~~~l~~~--~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~ 642 (733)
..+++.. ++. ++++++||++.+|+.++++ |++++++++.....+ ......+ ++ ...+.+ .
T Consensus 131 ~~~~~~~~~~~~----~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~----~~~~~~~----~~--~~~~~~---~ 193 (249)
T PRK09454 131 ALAARALWAGAA----VPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDD----WLELTRR----LG--CVSLHL---N 193 (249)
T ss_pred HHHHHHHhcCCC----CCEEEEeCCHHHHHHHHHhCCCCcEEEEecccccc----HHHHHHh----cC--CeEEec---c
Confidence 3444443 343 5899999999999999999 999999998642111 1111111 11 112222 1
Q ss_pred ccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHH
Q 004721 643 FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARY 708 (733)
Q Consensus 643 ~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~ 708 (733)
+...++++++.+|++|++|++||+|+++ ++.+++ ++|||||+||+|+.+...
T Consensus 194 ~~~~~~~~v~~~~~~g~~v~~WTvn~~~-------------~~~~l~-~~GVdgIiTD~p~~~~~~ 245 (249)
T PRK09454 194 HKLLDEARVAALKAAGLRILVYTVNDPA-------------RARELL-RWGVDCICTDRIDLIGPD 245 (249)
T ss_pred cccCCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCChHhcCcc
Confidence 2234789999999999999999999997 888887 999999999999987654
No 27
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3e-44 Score=367.19 Aligned_cols=228 Identities=14% Similarity=0.153 Sum_probs=179.1
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~------------------~~~-~v~ 61 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTG------------------VEG-LLH 61 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccC------------------CCc-eec
Confidence 6899999999999999999999999999999999999999999999999999999 667 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|++||++++..... ++.+.|. +++||||+|+|+++++..+ ++++||||.+.... ..+.+.+.+++
T Consensus 62 ~~t~~el~~l~~~~~~-------~~~~~~~-~~~iptL~evl~~~~~~~~-~~l~iEiK~~~~~~----~~~~~~v~~~~ 128 (229)
T cd08581 62 ELEDAELDSLRVAEPA-------RFGSRFA-GEPLPSLAAVVQWLAQHPQ-VTLFVEIKTESLDR----FGLERVVDKVL 128 (229)
T ss_pred cCCHHHHhhcccccCc-------ccccccC-CccCCCHHHHHHHHhhCCC-ceEEEEecCCcccc----cchhHHHHHHH
Confidence 9999999999764321 1223455 4899999999999987323 38999999764321 23455566666
Q ss_pred HHcC-CCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+.++ +. ++++++|||+.+|+.+|++|.++++++...... ... ..+..+++ .++.+... + .
T Consensus 129 ~~~~~~~----~~~~i~SF~~~~l~~~r~~~~~~~~~l~~~~~~----~~~----~~~~~~~~--~~~~~~~~--~--~- 189 (229)
T cd08581 129 RALPAVA----AQRVLISFDYDLLALAKQQGGPRTGWVLPDWDD----ASL----AEADELQP--DYLFCDKN--L--L- 189 (229)
T ss_pred HHHHhcc----CCeEEEeCCHHHHHHHHhcCCCCeEEEeccCCh----HHH----HHHHhhCC--CEEecccc--c--C-
Confidence 6664 44 699999999999999999988999988743211 111 22233433 23333221 1 1
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
..++.+|++|++|++||||++. ++.+++ ++||||||||+|
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~GVdgiiTD~P 229 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNEPA-------------EALALA-ARGVALIETDNI 229 (229)
T ss_pred hhhHHHHhCCceEEEEEcCCHH-------------HHHHHH-HhCCcEEEcCCC
Confidence 3578899999999999999997 899997 999999999998
No 28
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=2.9e-44 Score=372.59 Aligned_cols=231 Identities=14% Similarity=0.092 Sum_probs=179.9
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
.|.||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++
T Consensus 7 ~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d--~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~~----------------- 67 (249)
T PRK09454 7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHR--MIEFDAKLSADGEIFLLHDDTLERTSNGWG----------------- 67 (249)
T ss_pred CCeEEECCCCCCCCChHHHHHHHHHHHcCCC--EEEEEeeECCCCCEEEECCCcccccCCCCC-----------------
Confidence 5899999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.|.++||+||++++++.++ ...|.+ ++||||+|+|++++ +..++||+|....... ...+.+..+++..
T Consensus 68 --~v~~~t~~el~~l~~~~~~---~~~~~~--~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~~---~~~~~v~~~~~~~ 137 (249)
T PRK09454 68 --VAGELTWQDLAQLDAGSWF---SAAFAG--EPLPTLSQVAARCRAHGMAANIEIKPTTGREA---ETGRVVALAARAL 137 (249)
T ss_pred --chhhCCHHHHHhcCCCCcc---CCCCCC--CcCCCHHHHHHHHHhcCCEEEEEECCCCCcch---hHHHHHHHHHHHH
Confidence 7999999999999998865 345665 89999999999985 4679999995321111 1233333333332
Q ss_pred -----CCceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCC
Q 004721 249 -----VVNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDE 322 (733)
Q Consensus 249 -----~~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~ 322 (733)
+.++++||++..|++++++.| ..+.+++.... ...+.. .+.. .+..+++.+..
T Consensus 138 ~~~~~~~v~v~SF~~~~l~~l~~~~p--~~~~~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~~~------ 196 (249)
T PRK09454 138 WAGAAVPPLLSSFSEDALEAARQAAP--ELPRGLLLDEW-------PDDWLE------LTRRLGCVSLHLNHKL------ 196 (249)
T ss_pred hcCCCCCEEEEeCCHHHHHHHHHhCC--CCcEEEEeccc-------cccHHH------HHHhcCCeEEeccccc------
Confidence 235899999999999999998 67777633211 011111 1111 12334443322
Q ss_pred ccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCcccc
Q 004721 323 SLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 323 ~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
.++.+++.+|++|++|++||||++ ++|++++++| |||||||+|+.+...
T Consensus 197 -----~~~~~v~~~~~~g~~v~~WTvn~~------------~~~~~l~~~G---VdgIiTD~p~~~~~~ 245 (249)
T PRK09454 197 -----LDEARVAALKAAGLRILVYTVNDP------------ARARELLRWG---VDCICTDRIDLIGPD 245 (249)
T ss_pred -----CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCChHhcCcc
Confidence 257899999999999999999875 8899999999 999999999987654
No 29
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=3.1e-44 Score=381.84 Aligned_cols=254 Identities=17% Similarity=0.196 Sum_probs=186.2
Q ss_pred CCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCC
Q 004721 88 TGDPPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV 167 (733)
Q Consensus 88 ~~~~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~ 167 (733)
...+|.||||||+++.+||||++||+.|++.||| +||+|||+||||++||+||++|+|+||+++
T Consensus 23 ~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad--~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~g-------------- 86 (300)
T cd08612 23 SPFPCRHISHRGGSGENLENTMEAFEHAVKVGTD--MLELDVHLTKDGQVVVSHDENLLRSCGVDK-------------- 86 (300)
T ss_pred cCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECcCCeEEEECCccccccCCCCc--------------
Confidence 4567899999999999999999999999999999 999999999999999999999999999876
Q ss_pred CCCccccccCCHHhhccccccccc-----cCCCCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHH
Q 004721 168 PTPGWFSIDYTLNDLSNIILNQGV-----YSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVL 242 (733)
Q Consensus 168 ~~~g~~v~d~T~~eL~~l~~~~~~-----~~~~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~ 242 (733)
.|.++||+||++++++..+ .+++..|.| ++||||+|+|++++...++||||.+.. .+++.++
T Consensus 87 -----~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g--~~IPtL~EvL~~~~~~~lnIEiK~~~~------~~~~~v~ 153 (300)
T cd08612 87 -----LVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSD--RRIPLLEEVFEAFPDTPINIDIKVEND------ELIKKVS 153 (300)
T ss_pred -----ccccCCHHHHhhccccccccccCCccccccCCC--CCCCCHHHHHHhCCCCeEEEEECCCch------HHHHHHH
Confidence 7999999999999654321 122345555 899999999999988899999996531 3778899
Q ss_pred HHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCC----------CccC--CCCCcchhHHHhhHHHHHhhc
Q 004721 243 SVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGK----------SEIE--PTTNQTYGSLLKNLTFIKTFA 307 (733)
Q Consensus 243 ~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~----------~~~~--~~~~~~~~~~~~~l~~~~~~a 307 (733)
+++++++. ++++||+++.|++++++.| +++++++ ... .... +.....+...... .....+.
T Consensus 154 ~~i~~~~~~~~v~isSF~~~~L~~~~~~~p--~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 229 (300)
T cd08612 154 DLVRKYKREDITVWGSFNDEIVKKCHKENP--NIPLFFS-LKRVLLLLLLYYTGLLPFIPIKESFLEIPMPS-IFLKTYF 229 (300)
T ss_pred HHHHHcCCCCcEEEEeCCHHHHHHHHHhCC--CccEEec-hHHHHHHHHHHHcccCccccCccccccccchh-hhhhhcc
Confidence 99999876 4999999999999999998 6666541 110 0000 0000000000000 0000000
Q ss_pred cc--ccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 308 SG--ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 308 ~~--i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
.. .........+. .+...++++|+.+|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 230 ~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P 291 (300)
T cd08612 230 PKSMSRLNRFVLFLI---DWLLMRPSLFRHLQKRGIQVYGWVLNDE------------EEFERAFELG---ADGVMTDYP 291 (300)
T ss_pred cccccccccceeccc---ccccCCHHHHHHHHHCCCEEEEeecCCH------------HHHHHHHhcC---CCEEEeCCH
Confidence 00 00000000000 1223468999999999999999999875 8999999999 999999999
Q ss_pred CCccccc
Q 004721 386 LTPSAAV 392 (733)
Q Consensus 386 ~~~~~~l 392 (733)
+.+++++
T Consensus 292 ~~l~~~l 298 (300)
T cd08612 292 TKLREFL 298 (300)
T ss_pred HHHHHHH
Confidence 9877654
No 30
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3.2e-44 Score=367.00 Aligned_cols=221 Identities=14% Similarity=0.187 Sum_probs=167.9
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+||+.+ .
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad--~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGAR--FVEFDVQLSADGVPVVFHDDTLLRLTGVEG-------------------L 59 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCC--EEEEeeeECCCCcEEEECCCccccccCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC---CceEeeccCchhhhhcCCcHHHHHHHHHhhcC-
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV- 249 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~---~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~- 249 (733)
|.++||+||++++++... +++..|.| ++||||+|+|+++++ ..++||+|.+.... ..+++.+.++++..+
T Consensus 60 v~~~t~~el~~l~~~~~~-~~~~~~~~--~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~~~~~~~ 133 (229)
T cd08581 60 LHELEDAELDSLRVAEPA-RFGSRFAG--EPLPSLAAVVQWLAQHPQVTLFVEIKTESLDR---FGLERVVDKVLRALPA 133 (229)
T ss_pred eccCCHHHHhhcccccCc-ccccccCC--ccCCCHHHHHHHHhhCCCceEEEEecCCcccc---cchhHHHHHHHHHHHh
Confidence 999999999999764321 23455666 899999999999853 67999999654221 123444455555443
Q ss_pred ---CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCCccC
Q 004721 250 ---VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLY 325 (733)
Q Consensus 250 ---~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~~~~ 325 (733)
.++|+||++++|++++++ | ..++++++.... ... ...+.. .+..+.+.+. +
T Consensus 134 ~~~~~~i~SF~~~~l~~~r~~-~--~~~~~~l~~~~~---------~~~----~~~~~~~~~~~~~~~~~-~-------- 188 (229)
T cd08581 134 VAAQRVLISFDYDLLALAKQQ-G--GPRTGWVLPDWD---------DAS----LAEADELQPDYLFCDKN-L-------- 188 (229)
T ss_pred ccCCeEEEeCCHHHHHHHHhc-C--CCCeEEEeccCC---------hHH----HHHHHhhCCCEEecccc-c--------
Confidence 358999999999999999 6 567665321110 000 000111 1222222211 0
Q ss_pred CCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 326 ~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
. ..++.+|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 189 ---~-~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~G---VdgiiTD~P 229 (229)
T cd08581 189 ---L-PDTGDLWAGTWKWVIYEVNEP------------AEALALAARG---VALIETDNI 229 (229)
T ss_pred ---C-hhhHHHHhCCceEEEEEcCCH------------HHHHHHHHhC---CcEEEcCCC
Confidence 1 358889999999999999875 8999999999 999999998
No 31
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.5e-43 Score=363.52 Aligned_cols=231 Identities=19% Similarity=0.219 Sum_probs=182.9
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+ ++| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~g-~v~ 61 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTH------------------GTG-AVR 61 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccC------------------CCC-cee
Confidence 6899999999999999999999999999999999999999999999999999999 777 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|++||++|+++.+. +++||||+|+|+++++. + +.++||||.+.... ....+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~---------------~~~iptL~evl~~~~~~-~-~~l~iEiK~~~~~~--~~~~~~~~v~~~i 122 (235)
T cd08565 62 DLTLAERKALRLRDSF---------------GEKIPTLEEVLALFAPS-G-LELHVEIKTDADGT--PYPGAAALAAATL 122 (235)
T ss_pred eccHHHHhcCCCCCCC---------------CCCCCCHHHHHHHhhcc-C-cEEEEEECCCCCCC--ccHHHHHHHHHHH
Confidence 9999999999986431 37899999999999764 3 37999999653100 0125788999999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhH--HHHHHHH-HHhHhcCCCcccccCCcccccc
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQ--TIEDIKK-FADSVVLSKESVYPLNSAFITS 646 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~--~l~~i~~-~a~~i~~~~~~i~~~~~~~l~~ 646 (733)
+++++. ++++|+||+++.|++++++|++++++++.......... ....... .+..+++ ++ .+...
T Consensus 123 ~~~~~~----~~v~~~Sf~~~~l~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ 190 (235)
T cd08565 123 RRHGLL----ERSVLTSFDPAVLTEVRKHPGVRTLGSVDEDMLERLGGELPFLTATALKAHIVAV-----EQ---SLLAA 190 (235)
T ss_pred HhCCCc----CCEEEEECCHHHHHHHHhCCCCcEEEEeccccccccccccchhhhhhccCcEEcc-----Cc---ccccC
Confidence 999988 79999999999999999889999999875321100000 0011111 1111111 11 11124
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHH
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTA 705 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~ 705 (733)
++++++.+| +|++|++||||++. ++.+++ ++||||||||+|+.+
T Consensus 191 ~~~~v~~~~-~g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~P~~~ 234 (235)
T cd08565 191 TWELVRAAV-PGLRLGVWTVNDDS-------------LIRYWL-ACGVRQLTTDRPDLA 234 (235)
T ss_pred CHHHHHHHh-CCCEEEEEccCCHH-------------HHHHHH-HcCCCEEEeCCcccc
Confidence 678899987 49999999999987 899997 999999999999864
No 32
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=1.7e-43 Score=361.84 Aligned_cols=223 Identities=20% Similarity=0.219 Sum_probs=178.7
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccc
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i 488 (733)
+||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .|
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~------------------~~g-~v 61 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGG------------------VDL-KV 61 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCC------------------CCc-ee
Confidence 48999999999999999999999999999999999999999999999999999999 777 89
Q ss_pred cccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHH
Q 004721 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEA 568 (733)
Q Consensus 489 ~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~ 568 (733)
.++|++||++++++ +++||||+|+|+++++. ..++||||.+. ..+.++++
T Consensus 62 ~~~t~~eL~~l~~~------------------g~~iPtL~evl~~~~~~---~~l~iEiK~~~---------~~~~~~~~ 111 (226)
T cd08568 62 KELTYKELKKLHPG------------------GELIPTLEEVFRALPND---AIINVEIKDID---------AVEPVLEI 111 (226)
T ss_pred ecCCHHHHhhCCCC------------------CCcCCCHHHHHHhcCCC---cEEEEEECCcc---------HHHHHHHH
Confidence 99999999999874 37899999999999774 37999999642 45688999
Q ss_pred HHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHH-HhHhcCCCcccccCCcccccc
Q 004721 569 LGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF-ADSVVLSKESVYPLNSAFITS 646 (733)
Q Consensus 569 l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~-a~~i~~~~~~i~~~~~~~l~~ 646 (733)
++++++. ++++++||+++.|+.++++ |++++++++........ ........ +..+.++...+ .... ...
T Consensus 112 l~~~~~~----~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~-~~~ 182 (226)
T cd08568 112 VEKFNAL----DRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFS--IPELHEKLKLYSLHVPIDAI--GYIG-FEK 182 (226)
T ss_pred HHHcCCC----CcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccC--HHHHHHhcCCcEeccchhhh--cccc-ccc
Confidence 9999987 7999999999999999999 99999999864211110 01111111 11122211111 0001 112
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
++++++.+|++|++|++||+|++. ++.++. ++ |||||||+|+.
T Consensus 183 ~~~~v~~~~~~G~~v~~WTvn~~~-------------~~~~l~-~~-vdgiiTD~p~~ 225 (226)
T cd08568 183 FVELLRLLRKLGLKIVLWTVNDPE-------------LVPKLK-GL-VDGVITDDVEK 225 (226)
T ss_pred cHHHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-hh-CCEEEccCccc
Confidence 589999999999999999999986 777775 65 99999999975
No 33
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.2e-43 Score=364.13 Aligned_cols=228 Identities=16% Similarity=0.131 Sum_probs=177.3
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~g-------------------~ 59 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVD--AVEFDVHLTADGEVVVIHDPTLDRTTHGTG-------------------A 59 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEeEEEccCCCEEEECCChhhcccCCCC-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
|.++||+||++|+++.++ | ++||||+|+|++++ ++.++||+|.+.... ....+++.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~~--------~--~~iptL~evl~~~~~~~~~l~iEiK~~~~~~-~~~~~~~~v~~~i~~~~~~ 128 (235)
T cd08565 60 VRDLTLAERKALRLRDSF--------G--EKIPTLEEVLALFAPSGLELHVEIKTDADGT-PYPGAAALAAATLRRHGLL 128 (235)
T ss_pred eeeccHHHHhcCCCCCCC--------C--CCCCCHHHHHHHhhccCcEEEEEECCCCCCC-ccHHHHHHHHHHHHhCCCc
Confidence 999999999999998753 3 79999999999995 468999999653110 112478889999999886
Q ss_pred --ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHH-HHhhcccccCCccccccCCCccCCC
Q 004721 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF-IKTFASGILVPKDYIWPVDESLYLL 327 (733)
Q Consensus 251 --~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~a~~i~~~~~~i~~~~~~~~~~ 327 (733)
++++||+++.|++++++ | +.++++ +......... ..... +.. ....+..++++.... .
T Consensus 129 ~~v~~~Sf~~~~l~~~~~~-p--~~~~~~-l~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~---------~ 189 (235)
T cd08565 129 ERSVLTSFDPAVLTEVRKH-P--GVRTLG-SVDEDMLERL--GGELP----FLTATALKAHIVAVEQSLL---------A 189 (235)
T ss_pred CCEEEEECCHHHHHHHHhC-C--CCcEEE-Eecccccccc--ccccc----hhhhhhccCcEEccCcccc---------c
Confidence 49999999999999999 8 677776 3321111000 00000 000 111233333332211 1
Q ss_pred CChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCc
Q 004721 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP 388 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~ 388 (733)
.++++|+++|+ |++|++||||++ ++|++++++| |||||||+|+.+
T Consensus 190 ~~~~~v~~~~~-g~~v~~WTVn~~------------~~~~~l~~~G---VdgIiTD~P~~~ 234 (235)
T cd08565 190 ATWELVRAAVP-GLRLGVWTVNDD------------SLIRYWLACG---VRQLTTDRPDLA 234 (235)
T ss_pred CCHHHHHHHhC-CCEEEEEccCCH------------HHHHHHHHcC---CCEEEeCCcccc
Confidence 24789999974 999999999874 8999999999 999999999975
No 34
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=3.5e-43 Score=360.72 Aligned_cols=228 Identities=22% Similarity=0.231 Sum_probs=185.6
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~------------------~~~-~i~ 61 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTN------------------GSG-AVT 61 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccC------------------CCc-eee
Confidence 6999999999999999999999999999999999999999999999999999999 666 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++||+||++++.+.+. .+.|. +++||||+|+|+++++. + +.++||||.+... ...+++.+++++
T Consensus 62 ~lt~~el~~l~~~~~~---------~~~~~-~~~iptl~evl~~~~~~-~-~~l~iEiK~~~~~----~~~~~~~v~~~l 125 (229)
T cd08562 62 ELTWAELAQLDAGSWF---------SPEFA-GEPIPTLADVLELAREL-G-LGLNLEIKPDPGD----EALTARVVAAAL 125 (229)
T ss_pred cCcHHHHhhcCCCccc---------CCCCC-CCCCCCHHHHHHHHHhc-C-CEEEEEECCCCCc----cHHHHHHHHHHH
Confidence 9999999999986442 23444 48999999999999865 3 3899999965421 124778899999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+++++.. ++|+++||+++.|+.+++. |+++++++......+ ..+.+ ..+++ ..+.+. +...++
T Consensus 126 ~~~~~~~---~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~----~~~~~----~~~~~--~~~~~~---~~~~~~ 189 (229)
T cd08562 126 RELWPHA---SKLLLSSFSLEALRAARRAAPELPLGLLFDTLPAD----WLELL----AALGA--VSIHLN---YRGLTE 189 (229)
T ss_pred HHhcCCc---CCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcC----HHHHH----HHcCC--eEEecC---hhhCCH
Confidence 9998741 6999999999999999999 999999987542211 11111 22221 122222 223468
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
++++.+|++|++|++||+|++. ++.+++ ++||||||||+|
T Consensus 190 ~~v~~~~~~g~~v~~wTvn~~~-------------~~~~~~-~~gVdgiiTD~p 229 (229)
T cd08562 190 EQVKALKDAGYKLLVYTVNDPA-------------RAAELL-EWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCC
Confidence 8999999999999999999987 888887 999999999998
No 35
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=2e-43 Score=369.10 Aligned_cols=240 Identities=20% Similarity=0.206 Sum_probs=180.6
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d--~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~~------------------ 60 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGAD--MLELDVQLTKDGQVVVFHDWDLDRLTGGSG------------------ 60 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEEECCCCCEEEEcCCcccceeCCce------------------
Confidence 679999999999999999999999999999 999999999999999999999999999876
Q ss_pred cccccCCHHhhccccccccccCCC------CCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHH
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRT------DKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~------~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l 245 (733)
.|.++|++||++++++.++...+ ..+. +++||||+|+|+.+++..++||+|.+.. ..+++.+++++
T Consensus 61 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~l~iEiK~~~~-----~~~~~~v~~~i 132 (264)
T cd08575 61 -LVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG--DGRIPTLEEVFKAFPDTPINIDIKSPDA-----EELIAAVLDLL 132 (264)
T ss_pred -EEecCCHHHHHhcccCCccccCCCCcccccCCC--CCcCCcHHHHHHhCCCCeEEEEECCCCH-----HHHHHHHHHHH
Confidence 79999999999999998763221 1223 4799999999999988889999996542 24788899999
Q ss_pred hhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcC---------CCccCCCCCcchhHHHhhHHHHHhhcccccCC
Q 004721 246 RSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLG---------KSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (733)
Q Consensus 246 ~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~ 313 (733)
+++++ ++++||++++|++++++.| ++++++.... .....+.... +..+..+.+.
T Consensus 133 ~~~~~~~~~~~~Sf~~~~l~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 198 (264)
T cd08575 133 EKYKREDRTVWGSTNPEYLRALHPENP--NLFESFSMTRCLLLYLALGYTGLLPFVPI------------KESFFEIPRP 198 (264)
T ss_pred HhccccceEEEEeCCHHHHHHHHHhCc--ccccccCchhHHHHHHHhheeccCCCCCC------------CceEEEeecc
Confidence 99876 4999999999999999988 4443321100 0000000000 0000011111
Q ss_pred ccccc--cCC----CccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 314 KDYIW--PVD----ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 314 ~~~i~--~~~----~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
...+. ... ...+...++++|+.+|++|++|++||||++ ++|++++++| |||||||+|+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~------------~~~~~l~~~G---VdgIiTD~P~~ 263 (264)
T cd08575 199 VIVLETFTLGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDE------------EDFEEAFDLG---ADGVMTDSPTK 263 (264)
T ss_pred cEEEEEeccccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCH------------HHHHHHHhcC---CCEEEeCCccc
Confidence 00000 000 001123468899999999999999999975 8999999999 99999999986
Q ss_pred c
Q 004721 388 P 388 (733)
Q Consensus 388 ~ 388 (733)
+
T Consensus 264 ~ 264 (264)
T cd08575 264 L 264 (264)
T ss_pred C
Confidence 3
No 36
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=3.5e-43 Score=371.75 Aligned_cols=256 Identities=17% Similarity=0.193 Sum_probs=188.8
Q ss_pred cCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccccc
Q 004721 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAG 483 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~ 483 (733)
..++|.||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+||.... ++.+ .
T Consensus 19 ~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~-~~~~---------~ 88 (316)
T cd08610 19 LGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGEV-QPES---------A 88 (316)
T ss_pred cCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCCc-cccc---------c
Confidence 34568899999999999999999999999999999999999999999999999999999995321 1111 1
Q ss_pred CcccccccCHHHHhccCccccCC----Cccccc---cCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhh
Q 004721 484 SGIFSFSLIWDEIQTLIPQISNP----YFKFKL---FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK 556 (733)
Q Consensus 484 ~g~~i~d~T~~EL~~L~~~~~~~----~~~~~~---~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~ 556 (733)
.| .|.++||+||++++++.|.. |.+..+ .....+. +++||||+|+|+++++. + ..++||||.+....+
T Consensus 89 ~~-~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~-~e~IPTLeEvL~~~~~~-~-~~l~IEIK~~~~~~~- 163 (316)
T cd08610 89 CE-NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERAR-NQSIPKLSNFLRLAEKE-N-KLVIFDLYRPPPKHP- 163 (316)
T ss_pred cc-chhhCCHHHHhhCCCCCccCcccccccccccccccccccC-CCCCCCHHHHHHHhHhc-C-ceEEEEeCCCcccCc-
Confidence 23 68999999999999987632 100000 0011234 48999999999999875 2 279999996421110
Q ss_pred cCCcHHHHHHHHH-HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCc
Q 004721 557 QGMSVTNSVMEAL-GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKE 634 (733)
Q Consensus 557 ~~~~~~~~v~~~l-~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~ 634 (733)
....+++.+++.+ +++++. +++++ ||++..++.+++. |++++++..... +..+.. .+ ..
T Consensus 164 ~~~~~~~~v~~~i~~~~~~~----~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~~--------~~~l~~----~~--~~ 224 (316)
T cd08610 164 YRHTWIRRVLEVILNEVGIE----QHLVL-WLPAHDRQYVQSVAPGFKQHVGRKVP--------IETLLK----NN--IS 224 (316)
T ss_pred chhHHHHHHHHHHHHHcCCC----CCEEE-EcCHHHHHHHHHHCcchhhhhccccc--------HHHHHH----cC--Ce
Confidence 0013677788876 677887 56666 5999999999999 999865432110 112211 11 12
Q ss_pred ccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 635 SVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 635 ~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
.+.+. +...++++++.+|++|++|++||||+++ ++.+++ ++||||||||+|+.+.++.+
T Consensus 225 ~l~~~---~~~l~~~~v~~a~~~Gl~V~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~~ 283 (316)
T cd08610 225 ILNLA---YKKLFSNDIRDYKAANIHTNVYVINEPW-------------LFSLAW-CSGIHSVTTNNIHLLKQLDH 283 (316)
T ss_pred EEccc---hhhCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hCCcCEEEeCCHHHHHHhhc
Confidence 23332 2234689999999999999999999997 888886 99999999999999876543
No 37
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=5.6e-43 Score=362.96 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=181.1
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
+|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||.... ++++. .+
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~-~~~~~---------~~- 69 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADV-FPERA---------HE- 69 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCcc-ccccc---------cc-
Confidence 36899999999999999999999999999999999999999999999999999999994321 11111 12
Q ss_pred cccccCHHHHhccCccccCCCccc-------cccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCC
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKF-------KLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~-------~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~ 559 (733)
.|.++||+||++|+++.|+..... +......+. +++||||+|+|+++++. + ..++||||.+....+ ...
T Consensus 70 ~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~-~~~IPtL~evl~~~~~~-~-~~l~iEiK~~~~~~~-~~~ 145 (252)
T cd08574 70 RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAG-NQSIPSLAELLRLAKKH-N-KSVIFDLRRPPPNHP-YYQ 145 (252)
T ss_pred chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcC-CCCCCCHHHHHHHHHHc-C-CeEEEEecCCcccCc-cHH
Confidence 689999999999999876311000 000011345 48999999999999875 3 279999996531000 012
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCccccc
Q 004721 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638 (733)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~ 638 (733)
.++++++++++++++. ++++++||+.. ++.++++ |+++++++.... ...+.. .+ ...+.+
T Consensus 146 ~~~~~v~~~l~~~~~~----~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~--------~~~~~~----~~--~~~~~~ 206 (252)
T cd08574 146 SYVNITLDTILASGIP----QHQVFWLPDEY-RALVRKVAPGFQQVSGRKLP--------VESLRE----NG--ISRLNL 206 (252)
T ss_pred HHHHHHHHHHHHcCCC----cccEEEccHHH-HHHHHHHCCCCeEeeccccc--------hHHHHh----cC--CeEEcc
Confidence 5788999999999987 56667666654 7999999 999988654321 111111 11 122333
Q ss_pred CCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 639 LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 639 ~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
. +...++++|+.+|++|++|++||||++. ++.+++ ++||||||||
T Consensus 207 ~---~~~~~~~~v~~~~~~g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD 251 (252)
T cd08574 207 E---YSQLSAQEIREYSKANISVNLYVVNEPW-------------LYSLLW-CSGVQSVTTN 251 (252)
T ss_pred C---cccCCHHHHHHHHHCCCEEEEEccCCHH-------------HHHHHH-HcCCCEEecC
Confidence 2 2234689999999999999999999997 899887 9999999999
No 38
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=8.7e-43 Score=365.02 Aligned_cols=244 Identities=18% Similarity=0.138 Sum_probs=190.4
Q ss_pred cceEEecCCCCCC--CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccccc--------ccccCCCcCCCcccc
Q 004721 407 NLLVISKNGASGD--YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN--------STNAAQSKFNSITTT 476 (733)
Q Consensus 407 ~~~iIaHRG~~~~--~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~r--------tt~v~~~~~~~r~~~ 476 (733)
+|+||||||+++. +||||++||++|++.|||+||+|||+||||++||+||.++++ +++
T Consensus 3 ~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~------------ 70 (265)
T cd08564 3 RPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDS------------ 70 (265)
T ss_pred CceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCC------------
Confidence 5899999999988 999999999999999999999999999999999999987665 444
Q ss_pred cccccccCcccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhh
Q 004721 477 IPEIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK 556 (733)
Q Consensus 477 ~~~~~~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~ 556 (733)
++| .|.++|++||++++++.+.. ..+.+ ...+. +++||||+|+|+++++. ++++||||.+.
T Consensus 71 ------~~~-~v~~~t~~el~~l~~~~~~~--~~~~~-~~~~~-~~~iptL~evl~~~~~~---~~l~iEiK~~~----- 131 (265)
T cd08564 71 ------GFK-NINDLSLDEITRLHFKQLFD--EKPCG-ADEIK-GEKIPTLEDVLVTFKDK---LKYNIELKGRE----- 131 (265)
T ss_pred ------Ccc-chhhCcHHHHhhcccCcccc--cCccc-ccccC-CccCCCHHHHHHHhccC---cEEEEEeCCCc-----
Confidence 566 79999999999999986532 11111 11133 48999999999999875 48999999654
Q ss_pred cCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCH-HHHHHHHhc-cC---ceEEEEeecccchhhhHHHHHHHHHHhHhcC
Q 004721 557 QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS-SVLMKLREK-TS---YELVYKVKENIRDALNQTIEDIKKFADSVVL 631 (733)
Q Consensus 557 ~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~-~~L~~lk~~-p~---~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~ 631 (733)
..+++.++++|+++++. ++|+|+||++ ++++++++. |+ +++++++...... ........+...+.
T Consensus 132 --~~~~~~v~~~l~~~~~~----~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~ 201 (265)
T cd08564 132 --VGLGERVLNLVEKYGMI----LQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSP----SPLDFLEQAKYYNA 201 (265)
T ss_pred --hhHHHHHHHHHHHcCCC----CCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCc----ccccHHHHHHhcCC
Confidence 24778999999999988 7999999999 999999999 98 9999998643110 01111112222221
Q ss_pred CCcccccCCccccccchHHHHHHHHCCCcEEEEe----cCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHH
Q 004721 632 SKESVYPLNSAFITSATDIVQRLQSFKLPVYVET----FSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAAR 707 (733)
Q Consensus 632 ~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wT----vn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~ 707 (733)
..+.+. +...++++++.+|++|+.|++|| +|+.+ ++.+++ ++||||||||+|+.+.+
T Consensus 202 --~~v~~~---~~~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~~-------------~~~~l~-~~GvdgiiTD~p~~~~~ 262 (265)
T cd08564 202 --TWVNFS---YDFWTEEFVKKAHENGLKVMTYFDEPVNDNEE-------------DYKVYL-ELGVDCICPNDPVLLVN 262 (265)
T ss_pred --ceeeec---hhhhhHHHHHHHHHcCCEEEEecCCCCCCCHH-------------HHHHHH-HcCCCEEEcCCHHHHHH
Confidence 122221 11236899999999999999999 45454 788887 99999999999999998
Q ss_pred HHH
Q 004721 708 YRS 710 (733)
Q Consensus 708 ~l~ 710 (733)
+++
T Consensus 263 ~~~ 265 (265)
T cd08564 263 FLK 265 (265)
T ss_pred hhC
Confidence 863
No 39
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=6.8e-43 Score=358.63 Aligned_cols=229 Identities=25% Similarity=0.371 Sum_probs=188.3
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
++||||||+++.+||||++||++|++.||++||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~ 61 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTN------------------GKG-Y 61 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccC------------------CCC-c
Confidence 368999999999999999999999999999999999999999999999999999999 666 7
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
|.++||+||++++.+.+.+ +.+. ++++|||+|+|+++++. + +.++||+|.+.... ..+++.+++
T Consensus 62 i~~~t~~el~~l~~~~~~~---------~~~~-~~~iptL~evl~~~~~~-~-~~l~leiK~~~~~~----~~~~~~l~~ 125 (230)
T cd08563 62 VKDLTLEELKKLDAGSWFD---------EKFT-GEKIPTLEEVLDLLKDK-D-LLLNIEIKTDVIHY----PGIEKKVLE 125 (230)
T ss_pred hhhCCHHHHHhcCCCCccC---------ccCC-CCcCCCHHHHHHHHHhc-C-cEEEEEECCCCCcC----hhHHHHHHH
Confidence 9999999999999875421 2233 47999999999999864 3 38999999764321 257889999
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccccc
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITS 646 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~ 646 (733)
+++++++. ++++++||++..++.+++. |++++++++...... ...++...+. ..+.+. +...
T Consensus 126 ~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~--------~~~~~~~~~~--~~v~~~---~~~~ 188 (230)
T cd08563 126 LVKEYNLE----DRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQD--------PKDYAKKIGA--DSLHPD---FKLL 188 (230)
T ss_pred HHHHcCCC----CCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcccC--------HHHHHHHhCC--EEEccC---chhc
Confidence 99999987 7999999999999999999 999999987643211 1122222211 122221 2234
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
++++++.+|++|++|++||+|+.. ++.+++ ++|||||+||+|
T Consensus 189 ~~~~i~~~~~~g~~v~~Wtvn~~~-------------~~~~~~-~~GVdgi~TD~P 230 (230)
T cd08563 189 TEEVVEELKKRGIPVRLWTVNEEE-------------DMKRLK-DLGVDGIITNYP 230 (230)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEeCCCC
Confidence 689999999999999999999987 899997 999999999998
No 40
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=5.6e-43 Score=358.08 Aligned_cols=221 Identities=18% Similarity=0.127 Sum_probs=173.2
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCcc
Q 004721 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGW 172 (733)
Q Consensus 93 ~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~ 172 (733)
+||||||+++.+||||++||++|++.|+| +||+|||+||||++||+||++|+|+||+++
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~g------------------- 59 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGAD--GVELDVWLTKDGKLVVLHDENLKRVGGVDL------------------- 59 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcC--EEEEEEEEcCCCCEEEECCCcccccCCCCc-------------------
Confidence 48999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 173 ~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
.|.++||+||++++++ +++||||+|+|++++. ..++||||.+. .++.++++++++++
T Consensus 60 ~v~~~t~~eL~~l~~~-------------g~~iPtL~evl~~~~~~~~l~iEiK~~~--------~~~~~~~~l~~~~~~ 118 (226)
T cd08568 60 KVKELTYKELKKLHPG-------------GELIPTLEEVFRALPNDAIINVEIKDID--------AVEPVLEIVEKFNAL 118 (226)
T ss_pred eeecCCHHHHhhCCCC-------------CCcCCCHHHHHHhcCCCcEEEEEECCcc--------HHHHHHHHHHHcCCC
Confidence 7999999999999875 2799999999999975 68999999642 45778899998875
Q ss_pred --ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCC
Q 004721 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (733)
Q Consensus 251 --~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~ 328 (733)
++++||+++.|++++++.| ..+++++....... .....+ ... ..+.++++.+..+... +. ..
T Consensus 119 ~~v~i~SF~~~~l~~~~~~~p--~~~~~~l~~~~~~~-----~~~~~~---~~~--~~~~~~~~~~~~~~~~---~~-~~ 182 (226)
T cd08568 119 DRVIFSSFNHDALRELRKLDP--DAKVGLLIGEEEEG-----FSIPEL---HEK--LKLYSLHVPIDAIGYI---GF-EK 182 (226)
T ss_pred CcEEEEECCHHHHHHHHHhCC--CCcEEEEeeccccc-----cCHHHH---HHh--cCCcEeccchhhhccc---cc-cc
Confidence 5999999999999999998 67777633211100 000000 000 1133344433222100 11 12
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
++++|+.+|++|++|++||||++ ++++++.+ + |||||||+|+.
T Consensus 183 ~~~~v~~~~~~G~~v~~WTvn~~------------~~~~~l~~-~---vdgiiTD~p~~ 225 (226)
T cd08568 183 FVELLRLLRKLGLKIVLWTVNDP------------ELVPKLKG-L---VDGVITDDVEK 225 (226)
T ss_pred cHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHh-h---CCEEEccCccc
Confidence 47899999999999999999874 77888754 6 99999999986
No 41
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=3.6e-43 Score=358.18 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=183.9
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~-~v~ 61 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAG------------------VNK-KVW 61 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccC------------------CCC-Chh
Confidence 6999999999999999999999999999999999999999999999999999999 666 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|++||++++.+.+ +. +++||||+|+|++++++ + +.++||||.+... ...+.+.+++++
T Consensus 62 ~~t~~el~~l~~~~~-------------~~-~~~iptL~evl~~~~~~-~-~~l~iEiK~~~~~----~~~~~~~v~~~l 121 (220)
T cd08579 62 DLTLEELKKLTIGEN-------------GH-GAKIPSLDEYLALAKGL-K-QKLLIELKPHGHD----SPDLVEKFVKLY 121 (220)
T ss_pred hCCHHHHhcCcCccC-------------CC-CCcCCCHHHHHHHhhcc-C-CeEEEEECCCCCC----CHHHHHHHHHHH
Confidence 999999999998643 12 37899999999999884 3 3899999976521 235788999999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+++++. ++++|+||++..++.+++. |+++++++......+. . ...++.+++ .+...++
T Consensus 122 ~~~~~~----~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~-----~--~~~~~~~~~----------~~~~~~~ 180 (220)
T cd08579 122 KQNLIE----NQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNL-----P--KTNVDFYSI----------EYSTLNK 180 (220)
T ss_pred HHcCCC----cCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcc-----c--ccCceEEee----------ehhhcCH
Confidence 999988 7999999999999999998 9999999886432211 0 011112221 1223468
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
++++.+|++|++|++||+|++. ++..++ ++|||||+||+|
T Consensus 181 ~~v~~~~~~G~~v~~wtvn~~~-------------~~~~~~-~~Gvd~i~TD~P 220 (220)
T cd08579 181 EFIRQAHQNGKKVYVWTVNDPD-------------DMQRYL-AMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-HcCCCEEeCCCC
Confidence 9999999999999999999987 888887 999999999998
No 42
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=1.1e-42 Score=371.56 Aligned_cols=253 Identities=16% Similarity=0.198 Sum_probs=185.8
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
+|.||||||+++.+||||++||++|+++|||+||+|||+||||+|||+||.+|+||||.... +++++ ..
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~-v~~~~----------~~ 69 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDRV-FPERQ----------YE 69 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCCc-ccccc----------cc
Confidence 46899999999999999999999999999999999999999999999999999999994320 11111 01
Q ss_pred cccccCHHHHhccCccccC----CCcccc--cc-CCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCC
Q 004721 487 FSFSLIWDEIQTLIPQISN----PYFKFK--LF-RNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGM 559 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~----~~~~~~--~~-~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~ 559 (733)
.+.++||+||++|+++.|. ||+... +. ....+. +++||||+|+|+++++. + ..++||||.+....+ ...
T Consensus 70 ~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~-~-~~l~iEIK~~~~~~~-~~~ 145 (351)
T cd08608 70 DASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAG-NQSVCSLAELLELAKRY-N-ASVLLNLRRPPPNHP-YHQ 145 (351)
T ss_pred ccccCCHHHHhhCCCCcccccCCccccccccccccccccC-CCCCCCHHHHHHHHHhc-C-CeEEEEECCCcccCc-chh
Confidence 3578999999999998763 221111 01 111344 48999999999999875 3 279999996531110 112
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCccccc
Q 004721 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYP 638 (733)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~ 638 (733)
.+++.+++++.++++.. ++|+++||+. ++.+|+. |+++++... . .....+. .++. ..+.+
T Consensus 146 ~~~~~v~~~i~~~~~~~---~~vi~sSf~~--~~~vr~l~P~~~~~~~~---~-----~~~~~~~----~~~~--~~l~~ 206 (351)
T cd08608 146 SWINLTLKTILASGIPQ---EQVMWTPDWQ--RKLVRKVAPGFQQTSGE---K-----LPVASLR----ERGI--TRLNL 206 (351)
T ss_pred HHHHHHHHHHHHhCCCc---CeEEEEcchH--HHHHHHHCCCCeeeccc---c-----chHHHHH----HcCC--eEEcc
Confidence 56788899999988752 5888888876 4789999 999875211 0 0112221 1221 22333
Q ss_pred CCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 639 LNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 639 ~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
. +...++++++.+|++|++|++||||++. ++.+++ ++||||||||+|+.+.+...
T Consensus 207 ~---~~~lt~~~v~~~~~~Gl~V~vWTVN~~~-------------~~~~l~-~~GVdgIiTD~P~~l~~l~~ 261 (351)
T cd08608 207 R---YTQASAQEIRDYSASNLSVNLYTVNEPW-------------LYSLLW-CSGVPSVTSDASHVLRKVPF 261 (351)
T ss_pred c---hhhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEECCHHHHHHhhh
Confidence 2 2234789999999999999999999997 888886 99999999999999987543
No 43
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=5.7e-43 Score=365.62 Aligned_cols=246 Identities=19% Similarity=0.245 Sum_probs=185.8
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
|.||||||+++.+||||++||++|+++|+|+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~------------------~~~-~ 61 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTG------------------GSG-L 61 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeC------------------Cce-E
Confidence 679999999999999999999999999999999999999999999999999999999 667 8
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
|.++|++||++++++.+....+...+....+. +++||||+|+|+.+++. .++||||.+.. ..+++.+++
T Consensus 62 v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~~----~l~iEiK~~~~------~~~~~~v~~ 130 (264)
T cd08575 62 VSDLTYAELPPLDAGYGYTFDGGKTGYPRGGG-DGRIPTLEEVFKAFPDT----PINIDIKSPDA------EELIAAVLD 130 (264)
T ss_pred EecCCHHHHHhcccCCccccCCCCcccccCCC-CCcCCcHHHHHHhCCCC----eEEEEECCCCH------HHHHHHHHH
Confidence 99999999999998764321100001111233 48999999999998653 89999997642 257889999
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhh----hHHH--HHHHHHHhHhcCCC-------
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL----NQTI--EDIKKFADSVVLSK------- 633 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~----~~~l--~~i~~~a~~i~~~~------- 633 (733)
+++++++. ++++++||++++|+++++. |+++++++......... .... ...+..+..+.+..
T Consensus 131 ~i~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (264)
T cd08575 131 LLEKYKRE----DRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRPVIVLETFT 206 (264)
T ss_pred HHHhcccc----ceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEEeecccEEEEEec
Confidence 99999988 7999999999999999999 99887766532100000 0000 00000000000000
Q ss_pred ---cccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 634 ---ESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 634 ---~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
..+.+ .+...++++++.+|++|++|++||||+.. ++.+++ ++||||||||+|+.
T Consensus 207 ~~~~~~~~---~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~P~~ 263 (264)
T cd08575 207 LGEGASIV---AALLWWPNLFDHLRKRGIQVYLWVLNDEE-------------DFEEAF-DLGADGVMTDSPTK 263 (264)
T ss_pred cccccchh---hhhhcCHHHHHHHHhcCCcEEEEEECCHH-------------HHHHHH-hcCCCEEEeCCccc
Confidence 00111 22345789999999999999999999997 899987 99999999999985
No 44
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=1.3e-42 Score=367.81 Aligned_cols=250 Identities=18% Similarity=0.190 Sum_probs=186.7
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
+|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||.... ++.+. ..
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~-~~~~~----------~~ 94 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDV-FPGRD----------AA 94 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCCC-ccccc----------cc
Confidence 47899999999999999999999999999999999999999999999999999999993210 00000 01
Q ss_pred cccccCHHHHhccCccccCCCcccccc---------CCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhc
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKLF---------RNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQ 557 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~~---------~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~ 557 (733)
.|.++|++||++++++.|... ..++ ....+. +++||||+|+|+++++. + ..++||||.+.... ..
T Consensus 95 ~V~dlTlaEL~~ld~g~wf~~--~~~~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~-~-~~l~IEIK~~~~~~-~~ 168 (315)
T cd08609 95 GSNNFTWTELKTLNAGSWFLE--RRPFWTLSSLSEEDRREAD-NQTVPSLSELLDLAKKH-N-VSIMFDLRNENNSH-VF 168 (315)
T ss_pred cHhhCCHHHHhhCCCCcccCc--ccccccccccccccccccC-CCCCCCHHHHHHHHHhc-C-CEEEEEeCCCCCCC-cc
Confidence 489999999999999865321 0000 001234 48999999999999875 3 27999999652100 00
Q ss_pred CCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCccc
Q 004721 558 GMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESV 636 (733)
Q Consensus 558 ~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i 636 (733)
...+.+.++++++++++.. ++++ +|++..++.+++. |++++++.... ......+. .+
T Consensus 169 ~~~f~~~vl~~i~~~~~~~---~~v~--~~~~~~l~~~~~~~P~~~~~~~~~~----------~~~~~~~~-------~i 226 (315)
T cd08609 169 YSSFVFYTLETILKLGIPP---DKVW--WLPDEYRHDVMKMEPGFKQVYGRQK----------EMLMDGGN-------FM 226 (315)
T ss_pred HHHHHHHHHHHHHHcCCCc---ceEE--EeCHHHHHHHHHhCcCceeecccch----------hhHhcCCe-------EE
Confidence 1257788999999999762 3444 3478899999999 99998754310 00111111 22
Q ss_pred ccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhh
Q 004721 637 YPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKL 712 (733)
Q Consensus 637 ~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~ 712 (733)
.+. +...++++|+.+|++|++|++||||++. ++.+++ ++||||||||+|+.+.+.++..
T Consensus 227 ~~~---~~~l~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~~~~ 285 (315)
T cd08609 227 NLP---YQDLSALEIKELRKDNVSVNLWVVNEPW-------------LFSLLW-CSGVSSVTTNACQLLKDMSKPI 285 (315)
T ss_pred ecc---cccCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHHhhhhh
Confidence 221 2234688999999999999999999997 899997 9999999999999999887755
No 45
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=1.4e-42 Score=356.34 Aligned_cols=223 Identities=19% Similarity=0.187 Sum_probs=179.5
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad--~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~~-------------------~ 59 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVR--WVEFDVKLSGDGTLVLIHDDTLDRTTNGSG-------------------A 59 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEeECCCCCEEEEcCCCCccccCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
|+++||+||++++.+.|+ ...|.+ ++||||+|+|++++ ++.++||+|.+... ...+++.+++++++++.
T Consensus 60 i~~lt~~el~~l~~~~~~---~~~~~~--~~iptl~evl~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~~~~~ 131 (229)
T cd08562 60 VTELTWAELAQLDAGSWF---SPEFAG--EPIPTLADVLELARELGLGLNLEIKPDPGD---EALTARVVAAALRELWPH 131 (229)
T ss_pred eecCcHHHHhhcCCCccc---CCCCCC--CCCCCHHHHHHHHHhcCCEEEEEECCCCCc---cHHHHHHHHHHHHHhcCC
Confidence 999999999999998764 344555 79999999999995 46799999965322 12467788999998875
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCC
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~ 327 (733)
++++||+++.++++++..| ..++++ +..... ..+..+ +..+ .+.++.+.+..
T Consensus 132 ~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~------~~~~~~---~~~~--~~~~~~~~~~~----------- 186 (229)
T cd08562 132 ASKLLLSSFSLEALRAARRAAP--ELPLGL-LFDTLP------ADWLEL---LAAL--GAVSIHLNYRG----------- 186 (229)
T ss_pred cCCEEEECCCHHHHHHHHHhCC--CCcEEE-EecCCC------cCHHHH---HHHc--CCeEEecChhh-----------
Confidence 4899999999999999998 667765 222110 111111 1111 13334443332
Q ss_pred CChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
.++++|+.+|++|++|++||||++ +++++++++| |||||||+|
T Consensus 187 ~~~~~v~~~~~~g~~v~~wTvn~~------------~~~~~~~~~g---VdgiiTD~p 229 (229)
T cd08562 187 LTEEQVKALKDAGYKLLVYTVNDP------------ARAAELLEWG---VDAIFTDRP 229 (229)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCC
Confidence 247899999999999999999875 8899999999 999999998
No 46
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.9e-42 Score=356.04 Aligned_cols=228 Identities=22% Similarity=0.279 Sum_probs=185.8
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|+++||+||++||||++||+||.+++|+|| +.| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~------------------~~~-~i~ 61 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSG------------------GDG-AVS 61 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccC------------------CCc-chh
Confidence 6999999999999999999999999999999999999999999999999999999 566 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++||+||++++++.+.. ..+. +++||||+|+|++++++ + +.++||||.+. .+..+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~~---------~~~~-~~~iptL~evl~~~~~~-~-~~l~ieiK~~~-----~~~~~~~~~~~~~ 124 (233)
T cd08582 62 DLTLAELRKLDIGSWKG---------ESYK-GEKVPTLEEYLAIVPKY-G-KKLFIEIKHPR-----RGPEAEEELLKLL 124 (233)
T ss_pred hCCHHHHhcCCCCcccC---------CCCC-CCcCCCHHHHHHHHHhc-C-ceEEEEeCCCc-----cCccHHHHHHHHH
Confidence 99999999999875421 2344 48999999999999985 3 38999999751 1246788999999
Q ss_pred HHcC-CCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHH-HhHhcCCCcccccCCccccc-
Q 004721 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF-ADSVVLSKESVYPLNSAFIT- 645 (733)
Q Consensus 570 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~-a~~i~~~~~~i~~~~~~~l~- 645 (733)
++++ +. ++|+++||++..++.++++ |+++++++.......... ...+... +.++.+ . +..
T Consensus 125 ~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~--~~~~~~~~~~~i~~-------~---~~~~ 188 (233)
T cd08582 125 KESGLLP----EQIVIISFDAEALKRVRELAPTLETLWLRNYKSPKEDP--RPLAKSGGAAGLDL-------S---YEKK 188 (233)
T ss_pred HHcCCCC----CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccccch--hHHHHhhCceEEcc-------c---cccc
Confidence 9994 55 7999999999999999999 999999997543211000 0011111 122222 1 112
Q ss_pred cchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChH
Q 004721 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (733)
Q Consensus 646 ~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~ 703 (733)
.++++++.+|++|++|++||+|+.. ++.+++ ++|||||+||+|+
T Consensus 189 ~~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~GVdgi~TD~p~ 232 (233)
T cd08582 189 LNPAFIKALRDAGLKLNVWTVDDAE-------------DAKRLI-ELGVDSITTNRPG 232 (233)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCCC
Confidence 4689999999999999999999997 899997 9999999999996
No 47
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=3e-42 Score=365.24 Aligned_cols=257 Identities=16% Similarity=0.184 Sum_probs=191.3
Q ss_pred ceEEecCCCCCCCC--------CchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccc
Q 004721 408 LLVISKNGASGDYP--------SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPE 479 (733)
Q Consensus 408 ~~iIaHRG~~~~~P--------ENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~ 479 (733)
+.||||||+++.+| |||++||+.|+++|+|+||+|||+||||++||+||.+|+|+ |
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~--------------- 65 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-G--------------- 65 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-C---------------
Confidence 57999999999999 99999999999999999999999999999999999999994 6
Q ss_pred ccccCcccccccCHHHHhccCccccCC-CccccccCCcCCCCC---ccccCHHHHHHHHHhcCCCceEEEEecchhHHHh
Q 004721 480 IMAGSGIFSFSLIWDEIQTLIPQISNP-YFKFKLFRNPKNKNA---GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAE 555 (733)
Q Consensus 480 ~~~~~g~~i~d~T~~EL~~L~~~~~~~-~~~~~~~~~~~~~g~---~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~ 555 (733)
++| .|.++|++||++++...... +.. ......+.|. ++||||+|+|+.++.. ++++||||.+.....
T Consensus 66 ---~~~-~v~~lt~~eL~~ld~~~~~~~~~~--~~~~~~~~g~~~~~~iptL~evl~~~~~~---~~l~IEiK~~~~~~~ 136 (286)
T cd08606 66 ---TDV-PIHDLTLEQFLHLSRMKYTVDFKK--KGFKGNSRGHSIQAPFTTLEELLKKLPKS---VGFNIELKYPMLHEA 136 (286)
T ss_pred ---CCC-ccccCCHHHHHhhhcccccccccc--cCCCCcccccccccCCCcHHHHHHhCCCc---cceEEEEecCCcchh
Confidence 556 79999999999997532111 100 0011112221 4689999999999764 489999997542110
Q ss_pred hc---------CCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccch---hhhHHHHHH
Q 004721 556 KQ---------GMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRD---ALNQTIEDI 622 (733)
Q Consensus 556 ~~---------~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~---~~~~~l~~i 622 (733)
.. ...+++.++++++++++. ++|+|+||++++|+.++.+ |++++++++...... .....+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 212 (286)
T cd08606 137 EEEEVAPVAIELNAFVDTVLEKVFDYGAG----RNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEA 212 (286)
T ss_pred hhcccccchhHHHHHHHHHHHHHHhcCCC----CceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHH
Confidence 00 014667899999999987 7999999999999999999 999999997542211 111112222
Q ss_pred HHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec--CCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 623 KKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 623 ~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv--n~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
..++...+. ..+.+.. .++..++++|+.+|++|+.|++||+ |++. ++.+++ ++||||||||
T Consensus 213 ~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~~-------------~~~~l~-~~GVdgIiTD 275 (286)
T cd08606 213 IRFAKQWNL--LGLVSAA-EPLVMCPRLIQVVKRSGLVCVSYGVLNNDPE-------------NAKTQV-KAGVDAVIVD 275 (286)
T ss_pred HHHHHHCCC--eEEEech-HHhhhChHHHHHHHHCCcEEEEECCccCCHH-------------HHHHHH-HcCCCEEEEC
Confidence 233333332 1121111 2234478999999999999999999 7775 788886 9999999999
Q ss_pred ChHHHHHHHH
Q 004721 701 FPMTAARYRS 710 (733)
Q Consensus 701 ~P~~~~~~l~ 710 (733)
+|+.+++.+.
T Consensus 276 ~p~~~~~~~~ 285 (286)
T cd08606 276 SVLAIRRGLT 285 (286)
T ss_pred CHHHHHHHhc
Confidence 9999998764
No 48
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.6e-42 Score=354.95 Aligned_cols=227 Identities=18% Similarity=0.180 Sum_probs=182.3
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~--~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGAD--GIETDVRLTKDGELVCVHDPTLKRTSGGDG-------------------A 59 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCCEEEecCCccccccCCCc-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCCcHHHHHHHHHhhcC-C
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~-~ 250 (733)
|.++||+||++++++.++. ..|.+ ++||||+|+|+++++ ..++||+|.+. ....+++.+++++++++ .
T Consensus 60 i~~~t~~el~~l~~~~~~~---~~~~~--~~iptL~evl~~~~~~~~~l~ieiK~~~----~~~~~~~~~~~~~~~~~~~ 130 (233)
T cd08582 60 VSDLTLAELRKLDIGSWKG---ESYKG--EKVPTLEEYLAIVPKYGKKLFIEIKHPR----RGPEAEEELLKLLKESGLL 130 (233)
T ss_pred hhhCCHHHHhcCCCCcccC---CCCCC--CcCCCHHHHHHHHHhcCceEEEEeCCCc----cCccHHHHHHHHHHHcCCC
Confidence 9999999999999987642 44555 899999999999865 78999999751 12357889999999984 2
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCC
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLL 327 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~ 327 (733)
++++||++..+++++++.| +.+++++...... . ..... ......+.++.+++.. .
T Consensus 131 ~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~--~----~~~~~----~~~~~~~~~i~~~~~~----------~ 188 (233)
T cd08582 131 PEQIVIISFDAEALKRVRELAP--TLETLWLRNYKSP--K----EDPRP----LAKSGGAAGLDLSYEK----------K 188 (233)
T ss_pred CCCEEEEecCHHHHHHHHHHCC--CCcEEEEeccCcc--c----cchhH----HHHhhCceEEcccccc----------c
Confidence 4999999999999999998 6777763221110 0 00000 0011134555554332 1
Q ss_pred CChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 328 PHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
.++++|+.+|++|++|++||||++ ++|++++++| ||||+||+|+.
T Consensus 189 ~~~~~v~~~~~~G~~v~~wTvn~~------------~~~~~l~~~G---Vdgi~TD~p~~ 233 (233)
T cd08582 189 LNPAFIKALRDAGLKLNVWTVDDA------------EDAKRLIELG---VDSITTNRPGR 233 (233)
T ss_pred CCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHCC---CCEEEcCCCCC
Confidence 257899999999999999999874 8999999999 99999999973
No 49
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.6e-42 Score=363.01 Aligned_cols=241 Identities=17% Similarity=0.171 Sum_probs=185.5
Q ss_pred CCCEEEEeCCCCCC--CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCcc--------ccCccccccccc
Q 004721 90 DPPFVVARGGFSGI--FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDN--------ASNIAQIFKTQQ 159 (733)
Q Consensus 90 ~~~~viaHRG~~~~--~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~r--------tt~~~~~~~~~~ 159 (733)
.+|+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.++++ ++++.+
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad--~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~~------ 73 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVD--GVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGFK------ 73 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCC--EEEEeeEECCCCCEEEEcCCccccCccccccccCCCcc------
Confidence 36899999999988 999999999999999999 999999999999999999987665 444443
Q ss_pred cccccCCCCCCccccccCCHHhhccccccccccCCCC---CCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCC
Q 004721 160 KNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRTD---KFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNL 235 (733)
Q Consensus 160 ~~~~~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~---~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~ 235 (733)
.|.++|++||++++++.|+...+. .+. +++||||+|+|+++++ +.++||||.+. .
T Consensus 74 -------------~v~~~t~~el~~l~~~~~~~~~~~~~~~~~--~~~iptL~evl~~~~~~~~l~iEiK~~~------~ 132 (265)
T cd08564 74 -------------NINDLSLDEITRLHFKQLFDEKPCGADEIK--GEKIPTLEDVLVTFKDKLKYNIELKGRE------V 132 (265)
T ss_pred -------------chhhCcHHHHhhcccCcccccCcccccccC--CccCCCHHHHHHHhccCcEEEEEeCCCc------h
Confidence 799999999999999988753211 233 4899999999999965 78999999653 1
Q ss_pred cHHHHHHHHHhhcCC---ceeccCCH-HHHHHHHHhcCCCc---ccchhhhcCCCccCCCCCcchhHHHhhHHHHH-hhc
Q 004721 236 SMRSFVLSVSRSVVV---NYISSPEV-NFLRSIAARFRPSM---TKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFA 307 (733)
Q Consensus 236 ~~~~~v~~~l~~~~~---~~i~SF~~-~~l~~l~~~~p~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a 307 (733)
.+++.+++++++++. ++|+||++ +++++++++.| + +++++ +...... ..+... +.... ..+
T Consensus 133 ~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~--~~~~~~~~~-l~~~~~~-----~~~~~~---~~~~~~~~~ 201 (265)
T cd08564 133 GLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRP--NKLNVPIAL-LFNEVKS-----PSPLDF---LEQAKYYNA 201 (265)
T ss_pred hHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCc--CCCCceEEE-EecCCCC-----cccccH---HHHHHhcCC
Confidence 477899999999986 59999999 99999999998 5 66765 3321110 000111 11111 124
Q ss_pred ccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 308 SGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 308 ~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
.++++.+..+ ++++|+.+|++|++|++||.++- +|+.++|++++++| |||||||+|++
T Consensus 202 ~~v~~~~~~~-----------~~~~v~~~~~~Gl~v~~wT~~~~--------~n~~~~~~~l~~~G---vdgiiTD~p~~ 259 (265)
T cd08564 202 TWVNFSYDFW-----------TEEFVKKAHENGLKVMTYFDEPV--------NDNEEDYKVYLELG---VDCICPNDPVL 259 (265)
T ss_pred ceeeechhhh-----------hHHHHHHHHHcCCEEEEecCCCC--------CCCHHHHHHHHHcC---CCEEEcCCHHH
Confidence 4455443322 47899999999999999993211 13358999999999 99999999998
Q ss_pred ccccc
Q 004721 388 PSAAV 392 (733)
Q Consensus 388 ~~~~l 392 (733)
+++++
T Consensus 260 ~~~~~ 264 (265)
T cd08564 260 LVNFL 264 (265)
T ss_pred HHHhh
Confidence 87765
No 50
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=4.3e-42 Score=357.37 Aligned_cols=232 Identities=16% Similarity=0.207 Sum_probs=184.4
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~------------------~~g-~v~ 61 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTD------------------GTG-LVA 61 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecC------------------CCc-eEe
Confidence 6899999999999999999999999999999999999999999999999999999 667 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++||+||++++++.+.++ ...|. +++||||+|+|+++++. + ..++||||.+.. .+++.+++++
T Consensus 62 ~~t~~el~~l~~~~~~~~-------~~~~~-~~~iptL~evl~~~~~~-~-~~l~iEiK~~~~-------~~~~~v~~~l 124 (258)
T cd08573 62 ELTWEELRKLNAAAKHRL-------SSRFP-GEKIPTLEEAVKECLEN-N-LRMIFDVKSNSS-------KLVDALKNLF 124 (258)
T ss_pred cCcHHHHhhCCCCCCCCC-------ccccC-CCCCCCHHHHHHHHHhc-C-CEEEEEeCCCcH-------HHHHHHHHHH
Confidence 999999999998865431 12345 38999999999999865 3 379999997542 4678899999
Q ss_pred HHcC-CCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhh-----h-----------HHHHHHHHH------
Q 004721 570 GNAG-YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDAL-----N-----------QTIEDIKKF------ 625 (733)
Q Consensus 570 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~-----~-----------~~l~~i~~~------ 625 (733)
++++ +. ++++++||++..|+++++. |++++++++........ . ..+..+..+
T Consensus 125 ~~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (258)
T cd08573 125 KKYPGLY----DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWL 200 (258)
T ss_pred HHCCCcc----CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998 77 7999999999999999999 99999998753210000 0 000000000
Q ss_pred HhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhh-cCcCEEEeCC
Q 004721 626 ADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEG-AGIDGVITEF 701 (733)
Q Consensus 626 a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~-~GVdgIiTD~ 701 (733)
+..+++ ..+.+. +...++++|+.+|++|++|++||||++. ++.+++ + +||| ||||+
T Consensus 201 ~~~~~~--~~v~~~---~~~~~~~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~~GVd-iiTD~ 257 (258)
T cd08573 201 PYFLGV--SALLIH---KDDISSAYVRYWRARGIRVIAWTVNTPT-------------EKQYFA-KTLNVP-YITDS 257 (258)
T ss_pred hhhcCe--eEEEec---hHhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HHhCCC-eecCC
Confidence 011121 222222 2234789999999999999999999997 899897 8 9999 99997
No 51
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=4.3e-42 Score=357.32 Aligned_cols=231 Identities=14% Similarity=0.126 Sum_probs=178.9
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad--~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~g-------------------~ 59 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGAD--GVEFDLEFTKDGVPVLMHDDTVDRTTDGTG-------------------L 59 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeECCCCcEEEECCCCcceecCCCc-------------------e
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhcC-C
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV-V 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~-~ 250 (733)
|+++||+||++|+++.+++ ....|.+ ++||||+|+|++++ +..++||+|.+.. .+++.+++++++++ .
T Consensus 60 v~~~t~~el~~l~~~~~~~-~~~~~~~--~~iptL~evl~~~~~~~~~l~iEiK~~~~------~~~~~v~~~l~~~~~~ 130 (258)
T cd08573 60 VAELTWEELRKLNAAAKHR-LSSRFPG--EKIPTLEEAVKECLENNLRMIFDVKSNSS------KLVDALKNLFKKYPGL 130 (258)
T ss_pred EecCcHHHHhhCCCCCCCC-CccccCC--CCCCCHHHHHHHHHhcCCEEEEEeCCCcH------HHHHHHHHHHHHCCCc
Confidence 9999999999999998753 2344666 89999999999985 4679999996532 47788999999988 4
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCC----CCcc---hhHHH-hhHHHH-----------Hhhcc
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPT----TNQT---YGSLL-KNLTFI-----------KTFAS 308 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~----~~~~---~~~~~-~~l~~~-----------~~~a~ 308 (733)
++++||++..++++++..| ++++++ +......... .... +.... ..+..+ ...++
T Consensus 131 ~~~v~v~SF~~~~l~~~~~~~p--~~~~g~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (258)
T cd08573 131 YDKAIVCSFNPIVIYKVRKADP--KILTGL-TWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVS 207 (258)
T ss_pred cCCEEEEECCHHHHHHHHHhCC--CceEEE-ecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCee
Confidence 5999999999999999998 677775 3221110000 0010 11000 000000 01123
Q ss_pred cccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHh-cCCcccceEEecC
Q 004721 309 GILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID-NGDFSVDGVLSDF 384 (733)
Q Consensus 309 ~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~-~G~~~VDgIiTD~ 384 (733)
.+++.+.. .++++|+.+|++|++|++||||++ ++|+++++ +| || ||||+
T Consensus 208 ~v~~~~~~-----------~~~~~v~~~~~~G~~v~vWTVn~~------------~~~~~l~~~~G---Vd-iiTD~ 257 (258)
T cd08573 208 ALLIHKDD-----------ISSAYVRYWRARGIRVIAWTVNTP------------TEKQYFAKTLN---VP-YITDS 257 (258)
T ss_pred EEEechHh-----------cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHHhC---CC-eecCC
Confidence 33333322 357899999999999999999875 89999999 99 99 99997
No 52
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=8e-42 Score=350.71 Aligned_cols=224 Identities=21% Similarity=0.269 Sum_probs=181.8
Q ss_pred CEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 92 PFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 92 ~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
++||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++++
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~--~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~~------------------ 60 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGAD--GIELDVHLTKDGQLVVIHDETVDRTTNGKG------------------ 60 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCcccccCCCC------------------
Confidence 369999999999999999999999999999 999999999999999999999999999875
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC--CCceEeeccCchhhhhcCCcHHHHHHHHHhhcC
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK--PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~--~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~ 249 (733)
.+.++||+||++++++.++. ..+.+ ++||||+|+|++++ +..++||+|.+.... ..+++.+++++++++
T Consensus 61 -~i~~~t~~el~~l~~~~~~~---~~~~~--~~iptL~evl~~~~~~~~~l~leiK~~~~~~---~~~~~~l~~~l~~~~ 131 (230)
T cd08563 61 -YVKDLTLEELKKLDAGSWFD---EKFTG--EKIPTLEEVLDLLKDKDLLLNIEIKTDVIHY---PGIEKKVLELVKEYN 131 (230)
T ss_pred -chhhCCHHHHHhcCCCCccC---ccCCC--CcCCCHHHHHHHHHhcCcEEEEEECCCCCcC---hhHHHHHHHHHHHcC
Confidence 79999999999999987643 23433 79999999999997 478999999654321 247889999999997
Q ss_pred C---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCCccC
Q 004721 250 V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLY 325 (733)
Q Consensus 250 ~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~~~~ 325 (733)
+ ++++||+++.++++++..| ..++++ +..... . .. ...+.. .+.++++.+..
T Consensus 132 ~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~-~-----~~------~~~~~~~~~~~v~~~~~~--------- 187 (230)
T cd08563 132 LEDRVIFSSFNHESLKRLKKLDP--KIKLAL-LYETGL-Q-----DP------KDYAKKIGADSLHPDFKL--------- 187 (230)
T ss_pred CCCCEEEEcCCHHHHHHHHHHCC--CCcEEE-EecCcc-c-----CH------HHHHHHhCCEEEccCchh---------
Confidence 5 4999999999999999998 667775 332111 0 00 011111 13445554332
Q ss_pred CCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 326 ~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
.++++++.+|++|++|++||||++ +++++++++| ||||+||+|
T Consensus 188 --~~~~~i~~~~~~g~~v~~Wtvn~~------------~~~~~~~~~G---Vdgi~TD~P 230 (230)
T cd08563 188 --LTEEVVEELKKRGIPVRLWTVNEE------------EDMKRLKDLG---VDGIITNYP 230 (230)
T ss_pred --cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEeCCCC
Confidence 247899999999999999999864 8999999999 999999998
No 53
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=3.8e-42 Score=350.64 Aligned_cols=215 Identities=17% Similarity=0.234 Sum_probs=176.5
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad--~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~~-------------------~ 59 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPD--YVEIDVQETKDGQFVVMHDANLKRLAGVNK-------------------K 59 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcCCchhhccCCCC-------------------C
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--CceEeeccCchhhhhcCCcHHHHHHHHHhhcCC-
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~- 250 (733)
|.++||+||++++++.+ +. +++||||+|+|+++++ ..++||||.+... ...+.+.++++++++++
T Consensus 60 v~~~t~~el~~l~~~~~-------~~--~~~iptL~evl~~~~~~~~~l~iEiK~~~~~---~~~~~~~v~~~l~~~~~~ 127 (220)
T cd08579 60 VWDLTLEELKKLTIGEN-------GH--GAKIPSLDEYLALAKGLKQKLLIELKPHGHD---SPDLVEKFVKLYKQNLIE 127 (220)
T ss_pred hhhCCHHHHhcCcCccC-------CC--CCcCCCHHHHHHHhhccCCeEEEEECCCCCC---CHHHHHHHHHHHHHcCCC
Confidence 99999999999998764 23 3799999999999964 6899999975421 22578889999999876
Q ss_pred --ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCC
Q 004721 251 --NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLP 328 (733)
Q Consensus 251 --~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~ 328 (733)
++|+||++..++.+++..| ..+++++ ..... ... . ...++.+++.+.. .
T Consensus 128 ~~v~v~Sf~~~~l~~~~~~~p--~~~~~~~-~~~~~---------~~~----~--~~~~~~~~~~~~~-----------~ 178 (220)
T cd08579 128 NQHQVHSLDYRVIEKVKKLDP--KIKTGYI-LPFNI---------GNL----P--KTNVDFYSIEYST-----------L 178 (220)
T ss_pred cCeEEEeCCHHHHHHHHHHCC--CCeEEEE-Eeccc---------Ccc----c--ccCceEEeeehhh-----------c
Confidence 4899999999999999998 6676652 22110 000 0 0123334443322 2
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
++++|+.+|++|++|++||||++ +++++++++| ||||+||+|
T Consensus 179 ~~~~v~~~~~~G~~v~~wtvn~~------------~~~~~~~~~G---vd~i~TD~P 220 (220)
T cd08579 179 NKEFIRQAHQNGKKVYVWTVNDP------------DDMQRYLAMG---VDGIITDYP 220 (220)
T ss_pred CHHHHHHHHHCCCEEEEEcCCCH------------HHHHHHHHcC---CCEEeCCCC
Confidence 47899999999999999999875 8899999999 999999998
No 54
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=1.1e-41 Score=361.68 Aligned_cols=261 Identities=18% Similarity=0.173 Sum_probs=185.5
Q ss_pred eEEecCCCC-------CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccc
Q 004721 409 LVISKNGAS-------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM 481 (733)
Q Consensus 409 ~iIaHRG~~-------~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~ 481 (733)
+.|||||++ +.+||||++||+.|+++|||+||+|||+||||++||+||.+|+|+++.... .++.
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~---------~~~~ 71 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGD---------SDRD 71 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccc---------cCcc
Confidence 369999984 899999999999999999999999999999999999999999999882210 0000
Q ss_pred ccCcccccccCHHHHhccCccccCC-Ccccccc--CCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhh--
Q 004721 482 AGSGIFSFSLIWDEIQTLIPQISNP-YFKFKLF--RNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEK-- 556 (733)
Q Consensus 482 ~~~g~~i~d~T~~EL~~L~~~~~~~-~~~~~~~--~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~-- 556 (733)
.+.+..|.++||+||++++++.+.. +...+.. .+.....+++||||+|+|+++++. ++++||||.+....+.
T Consensus 72 ~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~lnIEiK~~~~~~~~~~ 148 (290)
T cd08607 72 DLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPED---VGFNIEIKWPQQQKDGSW 148 (290)
T ss_pred ceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCc---cceEEEEecCcccccccc
Confidence 1112379999999999999864321 1100000 000111147899999999999764 4899999975421100
Q ss_pred --------cCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccc------hhhhHHHHH
Q 004721 557 --------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR------DALNQTIED 621 (733)
Q Consensus 557 --------~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~------~~~~~~l~~ 621 (733)
....+++.+++.+.++++. ++|+|+||++.+|..++.+ |++++++++..... +.....+..
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 224 (290)
T cd08607 149 ESELFTYFDRNLFVDIILKIVLEHAGK----RRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEI 224 (290)
T ss_pred ccccccccchhHHHHHHHHHHHHhCCC----CCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHH
Confidence 0013678899999998877 7999999999999999999 99999999854211 111111122
Q ss_pred HHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec--CCcccccccccCCChHHHHHHHHhhcCcCEEEe
Q 004721 622 IKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (733)
Q Consensus 622 i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv--n~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT 699 (733)
...++...+.....+.+ .++..++++++.+|++|+.|++||+ |+++ ++.+++ ++|||||||
T Consensus 225 ~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~-------------~~~~l~-~~GVdgIiT 287 (290)
T cd08607 225 AVNFAQAEELLGVNLHS---EDLLKDPSQIELAKSLGLVVFCWGDDLNDPE-------------NRKKLK-ELGVDGLIY 287 (290)
T ss_pred HHHHHHHcCCceeEech---hhhhcChHHHHHHHHcCCEEEEECCCCCCHH-------------HHHHHH-HcCCCEEEe
Confidence 22333333221111111 2334578999999999999999999 8776 788886 999999999
Q ss_pred CCh
Q 004721 700 EFP 702 (733)
Q Consensus 700 D~P 702 (733)
|++
T Consensus 288 D~~ 290 (290)
T cd08607 288 DRI 290 (290)
T ss_pred cCC
Confidence 985
No 55
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=1.9e-41 Score=348.57 Aligned_cols=228 Identities=21% Similarity=0.217 Sum_probs=178.5
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|| ++|..|.
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~------------------~~~~~v~ 62 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFG------------------KDGLIID 62 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeC------------------CCCCEec
Confidence 6899999999999999999999999999999999999999999999999999999 6622799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhc--CCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA--NSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~--~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
++|++||++++++.. +.++||||+|+|++++++ ++. .++||+|..... ..+.+.+.+
T Consensus 63 ~~t~~eL~~l~~~~~---------------~~~~iptL~evl~~~~~~~~~~~-~l~iEiK~~~~~-----~~~~~~v~~ 121 (234)
T cd08570 63 DSTWDELSHLRTIEE---------------PHQPMPTLKDVLEWLVEHELPDV-KLMLDIKRDNDP-----EILFKLIAE 121 (234)
T ss_pred cCCHHHHhhcccccC---------------CCccCCcHHHHHHHHHhcCCCCe-EEEEEECCCCCH-----HHHHHHHHH
Confidence 999999999987521 136899999999999765 343 899999965321 246677888
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHH---HhHhcCCCcccccCCccc
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF---ADSVVLSKESVYPLNSAF 643 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~---a~~i~~~~~~i~~~~~~~ 643 (733)
++++++......++|+++||++..++.+++. |+++++++..... . ...+..+ +.++++....+ +
T Consensus 122 ~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~------~ 189 (234)
T cd08570 122 MLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD-Y-----ARHFLNYSEKLVGISMHFVSL------W 189 (234)
T ss_pred HHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH-H-----HHHHhccccccceEEeeeehh------h
Confidence 8888764210116999999999999999999 9999988864311 0 1111111 11122111000 0
Q ss_pred cccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 644 ITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 644 l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
...++++++.+|++|++|++||+|++. ++.+++ ++|||||+||+|
T Consensus 190 ~~~~~~~v~~~~~~gl~v~~wTvn~~~-------------~~~~l~-~~gvdgiiTD~P 234 (234)
T cd08570 190 GPFGQAFLPELKKNGKKVFVWTVNTEE-------------DMRYAI-RLGVDGVITDDP 234 (234)
T ss_pred cccCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEeCCC
Confidence 013689999999999999999999987 899997 999999999998
No 56
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.4e-41 Score=351.25 Aligned_cols=244 Identities=19% Similarity=0.217 Sum_probs=187.4
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .|.
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~------------------~~~-~i~ 61 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTD------------------GTG-PVA 61 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccC------------------CCC-chh
Confidence 6899999999999999999999999999999999999999999999999999999 556 799
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|++||++++.+.+....+ +......+. ++++|||+|+|+++++. .++||+|.+. ..+++++++++
T Consensus 62 ~~t~~el~~l~~~~~~~~~~-~~~~~~~~~-~~~iptL~evl~~~~~~----~~~ieiK~~~-------~~~~~~~~~~l 128 (249)
T cd08561 62 DLTLAELRRLDAGYHFTDDG-GRTYPYRGQ-GIRIPTLEELFEAFPDV----RLNIEIKDDG-------PAAAAALADLI 128 (249)
T ss_pred hCCHHHHhhcCcCccccCcc-ccccccCCC-CccCCCHHHHHHhCcCC----cEEEEECCCc-------hhHHHHHHHHH
Confidence 99999999999875421000 000011223 37999999999998764 7999999753 24778999999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHH--HhHhcCCCcccc-cC-Ccccc
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKF--ADSVVLSKESVY-PL-NSAFI 644 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~--a~~i~~~~~~i~-~~-~~~~l 644 (733)
+++++. ++++++||++.+|+.+++. |+++++++..... + +...... ..........+. +. ...+.
T Consensus 129 ~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (249)
T cd08561 129 ERYGAQ----DRVLVASFSDRVLRRFRRLCPRVATSAGEGEVA-A-----FVLASRLGLGSLYSPPYDALQIPVRYGGVP 198 (249)
T ss_pred HHcCCC----CcEEEEECCHHHHHHHHHHCCCcceeccHHHHH-H-----HHHHhhcccccccCCCCcEEEcCcccCCee
Confidence 999987 7999999999999999999 9999987753210 0 0000000 000000001111 10 01122
Q ss_pred ccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHH
Q 004721 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYR 709 (733)
Q Consensus 645 ~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l 709 (733)
..++++++.+|++|+.|++||||+.+ ++.+++ ++|||||+||+|+++.+++
T Consensus 199 ~~~~~~v~~~~~~G~~v~vWTVN~~~-------------~~~~l~-~~gVdgIiTD~p~~~~~~~ 249 (249)
T cd08561 199 LVTPRFVRAAHAAGLEVHVWTVNDPA-------------EMRRLL-DLGVDGIITDRPDLLLEVL 249 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHhhC
Confidence 45689999999999999999999987 899887 9999999999999988763
No 57
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=2.7e-41 Score=357.11 Aligned_cols=253 Identities=17% Similarity=0.166 Sum_probs=184.6
Q ss_pred EEecCCCCC-C----------CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccc
Q 004721 410 VISKNGASG-D----------YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIP 478 (733)
Q Consensus 410 iIaHRG~~~-~----------~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~ 478 (733)
||||||++. . +||||++||++|++.|||+||+|||+||||+|||+||.+|+|++|...
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~----------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEV----------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCc-----------
Confidence 799999765 3 459999999999999999999999999999999999999999988110
Q ss_pred cccccCcccccccCHHHHhccCccccCCCcccc--ccC--Cc---CC--CCCccccCHHHHHHHHHhcCCCceEEEEecc
Q 004721 479 EIMAGSGIFSFSLIWDEIQTLIPQISNPYFKFK--LFR--NP---KN--KNAGKFMKLSDFLEMAKNANSLSGVLISIEN 549 (733)
Q Consensus 479 ~~~~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~--~~~--~~---~~--~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~ 549 (733)
.+| .|.++||+||++|+++.+.++.... .++ .+ .+ ..+++||||+|+|+.++.. ++++||||.
T Consensus 71 ----~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~---~~l~IEiK~ 142 (282)
T cd08605 71 ----ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPS---LGFNIELKF 142 (282)
T ss_pred ----Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCC---ccEEEEEec
Confidence 156 7999999999999987543210000 000 00 00 1247999999999999664 479999996
Q ss_pred hhHHHh--hcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeeccc---chhhhHHHHHHH
Q 004721 550 AVYLAE--KQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI---RDALNQTIEDIK 623 (733)
Q Consensus 550 ~~~~~~--~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~---~~~~~~~l~~i~ 623 (733)
+..... ..-..+.++++++++++++. ++|+|+|||+++|+.++++ |++++++++.... .+.....+....
T Consensus 143 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~ 218 (282)
T cd08605 143 GDDNKTEAEELVRELRAILAVCKQHAPG----RRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAI 218 (282)
T ss_pred CccccchHHHHHHHHHHHHHHHHhcCCC----CeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHH
Confidence 532100 00012357788999999887 7999999999999999999 9999999986421 111111222233
Q ss_pred HHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec--CCcccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 624 KFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 624 ~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv--n~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
.++..+++ ..+++.. ..+..++++++.+|++|+.|++||+ |+++ +|.+++ ++||||||||+
T Consensus 219 ~~~~~~~~--~~~~~~~-~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~~-------------~~~~l~-~~GVdgIiTD~ 281 (282)
T cd08605 219 QVALEGGL--QGIVSEV-KVLLRNPTAVSLVKASGLELGTYGKLNNDAE-------------AVERQA-DLGVDGVIVDH 281 (282)
T ss_pred HHHHHcCC--ceEEecH-HHhhcCcHHHHHHHHcCcEEEEeCCCCCCHH-------------HHHHHH-HcCCCEEEeCC
Confidence 33333332 2233321 1223478999999999999999999 8876 888887 99999999998
Q ss_pred h
Q 004721 702 P 702 (733)
Q Consensus 702 P 702 (733)
+
T Consensus 282 ~ 282 (282)
T cd08605 282 V 282 (282)
T ss_pred C
Confidence 6
No 58
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.7e-41 Score=354.09 Aligned_cols=251 Identities=20% Similarity=0.219 Sum_probs=187.5
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCccccccccc---ccCc
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIM---AGSG 485 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~---~~~g 485 (733)
.||||||+++.+||||++||+.|+++|||+||+|||+||||++||+||.+|+|+|+... ++. ...|
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~-----------~~~~~~~~~~ 70 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDP-----------DGAWLPYEGP 70 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecC-----------CCCcccccCc
Confidence 58999999999999999999999999999999999999999999999999998764111 000 0124
Q ss_pred ccccccCHHHHhccCccccCC---CccccccCCcCCCCCccccCHHHHHHHHHhcC--CCceEEEEecchhHHHh--hcC
Q 004721 486 IFSFSLIWDEIQTLIPQISNP---YFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN--SLSGVLISIENAVYLAE--KQG 558 (733)
Q Consensus 486 ~~i~d~T~~EL~~L~~~~~~~---~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~--~~~~l~iEiK~~~~~~~--~~~ 558 (733)
.|.++|++||++|+++.+.. ++..+.. ...+. +++||||+|+|+++++.+ + +.++||+|.+..... ...
T Consensus 71 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~-~~~~~-~~~iptL~evl~~~~~~~~~~-~~l~iEiK~~~~~~~~~~~~ 146 (263)
T cd08567 71 -ALYELTLAEIKQLDVGEKRPGSDYAKLFPE-QIPVP-GTRIPTLEEVFALVEKYGNQK-VRFNIETKSDPDRDILHPPP 146 (263)
T ss_pred -chhcCCHHHHHhcCCCccccCcCcccCCCc-cccCc-cccCCCHHHHHHHHHHhccCC-ceEEEEEcCCCCccccCccH
Confidence 79999999999999876531 0100000 11122 378999999999999742 2 389999996542100 001
Q ss_pred CcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccc
Q 004721 559 MSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVY 637 (733)
Q Consensus 559 ~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~ 637 (733)
..+++.++++++++++. ++|+|+||+++.++.++++ |++++++++..... .. +.. .+...+. ..+.
T Consensus 147 ~~~~~~v~~~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~---~~-~~~---~~~~~~~--~~~~ 213 (263)
T cd08567 147 EEFVDAVLAVIRKAGLE----DRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL---GN-LPR---AAKKLGA--DIWS 213 (263)
T ss_pred HHHHHHHHHHHHHcCCC----CceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc---cC-HHH---HHHHhCC--cEEe
Confidence 35788999999999987 7999999999999999999 99999999854310 00 111 1112222 2222
Q ss_pred cCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 638 ~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
+. +...++++++.+|++|+.|++||+|+.. ++.+++ ++|||||+||+|++
T Consensus 214 ~~---~~~~~~~~i~~~~~~G~~v~vwtvn~~~-------------~~~~~~-~~Gvdgi~TD~P~~ 263 (263)
T cd08567 214 PY---FTLVTKELVDEAHALGLKVVPWTVNDPE-------------DMARLI-DLGVDGIITDYPDL 263 (263)
T ss_pred cc---hhhcCHHHHHHHHHCCCEEEEecCCCHH-------------HHHHHH-HcCCCEEEcCCCCC
Confidence 21 2234689999999999999999999886 788886 99999999999963
No 59
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=2.2e-41 Score=359.46 Aligned_cols=252 Identities=16% Similarity=0.130 Sum_probs=180.9
Q ss_pred EEEEeCCCC-------CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccC
Q 004721 93 FVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVN 165 (733)
Q Consensus 93 ~viaHRG~~-------~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~ 165 (733)
+.|||||++ +.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|+|++.+..+
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad--~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~--------- 69 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGAD--MVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSD--------- 69 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCeeEeeccCccccC---------
Confidence 368999994 89999999999999999999 999999999999999999999999998764211
Q ss_pred CCCCCccccccCCHHhhccccccccccCCCCCCCC--------CCcccccHHHHHHhhC-CCceEeeccCchhhhhc---
Q 004721 166 GVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKFDG--------NGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQH--- 233 (733)
Q Consensus 166 g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g--------~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~--- 233 (733)
+.+..++.|.++||+||++++++.++.++...|.+ .+++||||+|+|++++ +++++||||.+......
T Consensus 70 ~~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~~ 149 (290)
T cd08607 70 RDDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSWE 149 (290)
T ss_pred ccceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCccceEEEEecCccccccccc
Confidence 11112347999999999999998654444444431 1478999999999986 47899999965321110
Q ss_pred --------CCcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHH-----
Q 004721 234 --------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLL----- 297 (733)
Q Consensus 234 --------~~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~----- 297 (733)
...+++.+++.+++++. ++|+||++++|..++++.| ..+++++....... ...+....
T Consensus 150 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~p--~~~~~~l~~~~~~~----~~~~~~~~~~~~~ 223 (290)
T cd08607 150 SELFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQN--KYPVLFLTQGKTQR----YPEFMDLRTRTFE 223 (290)
T ss_pred cccccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhCc--CCCEEEEecCCCCc----cccccchHHHhHH
Confidence 01256788888888764 5999999999999999998 67777633211100 00011100
Q ss_pred hhHHHHHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeec--CCCCCcccCCCCChHHHHHHHHhcCC
Q 004721 298 KNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGD 374 (733)
Q Consensus 298 ~~l~~~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTv--n~~~~~~~~~~~d~~~~~~~l~~~G~ 374 (733)
..+..... .+.++.+... +...++++|+.+|++|++|++||| |+ .++|++++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~Gl~v~~wTv~~n~------------~~~~~~l~~~G- 281 (290)
T cd08607 224 IAVNFAQAEELLGVNLHSE---------DLLKDPSQIELAKSLGLVVFCWGDDLND------------PENRKKLKELG- 281 (290)
T ss_pred HHHHHHHHcCCceeEechh---------hhhcChHHHHHHHHcCCEEEEECCCCCC------------HHHHHHHHHcC-
Confidence 00111111 1222222211 122357899999999999999999 64 38999999999
Q ss_pred cccceEEecCC
Q 004721 375 FSVDGVLSDFP 385 (733)
Q Consensus 375 ~~VDgIiTD~P 385 (733)
|||||||++
T Consensus 282 --VdgIiTD~~ 290 (290)
T cd08607 282 --VDGLIYDRI 290 (290)
T ss_pred --CCEEEecCC
Confidence 999999986
No 60
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2e-41 Score=358.37 Aligned_cols=257 Identities=16% Similarity=0.144 Sum_probs=183.4
Q ss_pred EEEEeCCCC--------CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcccccccccccccc
Q 004721 93 FVVARGGFS--------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLV 164 (733)
Q Consensus 93 ~viaHRG~~--------~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~ 164 (733)
+||||||++ +.+||||++||+.|+++|+| +||+|||+||||++||+||.+|+|+|++.+.+
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad--~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~--------- 69 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGAD--MVEFDVQLTKDGVPVIYHDFTISVSEKSKTGS--------- 69 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCC--EEEEEEEEccCCeEEEEcCCcceeeccccccc---------
Confidence 489999997 69999999999999999999 99999999999999999999999999876421
Q ss_pred CCCCCCccccccCCHHhhccccccccccCCCCCC-------------CCCCcccccHHHHHHhhCC-CceEeeccCchhh
Q 004721 165 NGVPTPGWFSIDYTLNDLSNIILNQGVYSRTDKF-------------DGNGFQILTVQDMARQIKP-PGLWLNIQHDAFY 230 (733)
Q Consensus 165 ~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~-------------~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~ 230 (733)
++....+++|.++||+||++|+++.++..+++.+ ...+++||||+|+|+++++ ++++||||.+...
T Consensus 70 ~~~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~ 149 (293)
T cd08572 70 DEGELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLL 149 (293)
T ss_pred ccCcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCcc
Confidence 1111122479999999999999988754322211 0114799999999999964 7899999965432
Q ss_pred hhc---------CCcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCcc-CCCCCcchhHHH
Q 004721 231 AQH---------NLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEI-EPTTNQTYGSLL 297 (733)
Q Consensus 231 ~~~---------~~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 297 (733)
... ...+++.+++++++++. ++++||++++|+.+++..| ..+++++....... .....+ ...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p--~~~~~~l~~~~~~~~~~~~~~-~~~~~ 226 (293)
T cd08572 150 EDGEGELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQN--KYPVLFLTNGGTNEVEHMDPR-RRSLQ 226 (293)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCc--cCCEEEEecCCCCcccccchh-hhhHH
Confidence 210 12467889999999876 4999999999999999998 67887633221100 000000 00000
Q ss_pred hhHHHHHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcc
Q 004721 298 KNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFS 376 (733)
Q Consensus 298 ~~l~~~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~ 376 (733)
..+...+. .+.++.+....+ ..++++|+.+|++|++|++|||+|+ +.++|++++++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~Gl~v~~wTv~~n----------~~~~~~~l~~~G--- 284 (293)
T cd08572 227 AAVNFALAEGLLGVVLHAEDL---------LKNPSLISLVKALGLVLFTYGDDNN----------DPENVKKQKELG--- 284 (293)
T ss_pred HHHHHHHHCCCeEEEechHHh---------hcCcHHHHHHHHcCcEEEEECCCCC----------CHHHHHHHHHcC---
Confidence 00111111 122333322221 2247899999999999999999321 248999999999
Q ss_pred cceEEecCC
Q 004721 377 VDGVLSDFP 385 (733)
Q Consensus 377 VDgIiTD~P 385 (733)
|||||||+|
T Consensus 285 VdgIiTD~~ 293 (293)
T cd08572 285 VDGVIYDRV 293 (293)
T ss_pred CCEEEecCC
Confidence 999999997
No 61
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2e-41 Score=358.36 Aligned_cols=260 Identities=17% Similarity=0.220 Sum_probs=191.7
Q ss_pred eEEecCCCC--------CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccc
Q 004721 409 LVISKNGAS--------GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEI 480 (733)
Q Consensus 409 ~iIaHRG~~--------~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~ 480 (733)
+||||||++ +.+||||++||+.|+++|+|+||+|||+||||++||+||.+|+|+++..+. .++
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~---------~~~ 71 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTG---------SDE 71 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccc---------ccc
Confidence 589999997 799999999999999999999999999999999999999999999985431 111
Q ss_pred cccCcccccccCHHHHhccCccccCCCcccc------ccCC---cCCCCCccccCHHHHHHHHHhcCCCceEEEEecchh
Q 004721 481 MAGSGIFSFSLIWDEIQTLIPQISNPYFKFK------LFRN---PKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAV 551 (733)
Q Consensus 481 ~~~~g~~i~d~T~~EL~~L~~~~~~~~~~~~------~~~~---~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~ 551 (733)
..|.+..|.++|++||++++++.+.+..... .+.. ..+. +++||||+|+|+.+++. .+++||||.+.
T Consensus 72 ~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iptL~evL~~~~~~---~~l~IEiK~~~ 147 (293)
T cd08572 72 GELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDE-HDPFPTLQEVLEQVPKD---LGFNIEIKYPQ 147 (293)
T ss_pred CcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhh-ccCCCCHHHHHHhCCCc---cceEEEEecCC
Confidence 1233338999999999999987653211000 0000 1123 37899999999999764 48999999764
Q ss_pred HHHhh--------cCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccc-----hhhhH
Q 004721 552 YLAEK--------QGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIR-----DALNQ 617 (733)
Q Consensus 552 ~~~~~--------~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~-----~~~~~ 617 (733)
..... ....+++.++++++++++. ++|+++||++.+|+.+++. |++++++++..... +....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~----~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 223 (293)
T cd08572 148 LLEDGEGELTPYFERNAFVDTILAVVFEHAGG----RRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRR 223 (293)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhCCC----CcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhh
Confidence 32100 0024788999999999988 8999999999999999999 99999999864321 11112
Q ss_pred HHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEec--CCcccccccccCCChHHHHHHHHhhcCcC
Q 004721 618 TIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETF--SNEFVSQAWDFFSDPTVEINTYYEGAGID 695 (733)
Q Consensus 618 ~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTv--n~~~~~~~~~~~~d~~~e~~~~l~~~GVd 695 (733)
.+..+..++...+. ..+.+.. .++..++++|+.+|++|+.|++||+ |+++ ++.+++ ++|||
T Consensus 224 ~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~-------------~~~~l~-~~GVd 286 (293)
T cd08572 224 SLQAAVNFALAEGL--LGVVLHA-EDLLKNPSLISLVKALGLVLFTYGDDNNDPE-------------NVKKQK-ELGVD 286 (293)
T ss_pred hHHHHHHHHHHCCC--eEEEech-HHhhcCcHHHHHHHHcCcEEEEECCCCCCHH-------------HHHHHH-HcCCC
Confidence 23334444433332 1122111 2233478999999999999999999 6665 788786 99999
Q ss_pred EEEeCCh
Q 004721 696 GVITEFP 702 (733)
Q Consensus 696 gIiTD~P 702 (733)
|||||+|
T Consensus 287 gIiTD~~ 293 (293)
T cd08572 287 GVIYDRV 293 (293)
T ss_pred EEEecCC
Confidence 9999987
No 62
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=2.4e-41 Score=347.82 Aligned_cols=221 Identities=18% Similarity=0.190 Sum_probs=171.1
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcc-ccccccccccccCCCCCCcc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIA-QIFKTQQKNYLVNGVPTPGW 172 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~-~~~~~~~~~~~~~g~~~~g~ 172 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+++|+|++. +
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d--~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~~~------------------- 59 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGAD--AIETDVHLTKDGVVVISHDPNLKRCFGKDGL------------------- 59 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCcEEEeCCCccceeeCCCCC-------------------
Confidence 6899999999999999999999999999 99999999999999999999999999987 4
Q ss_pred ccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-----CCceEeeccCchhhhhcCCcHHHHHHHHHhh
Q 004721 173 FSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-----PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (733)
Q Consensus 173 ~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-----~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~ 247 (733)
.|+++|++||++++++.. + .++||||+|+|++++ +..++||+|..... ..+++.+.+++++
T Consensus 60 ~v~~~t~~eL~~l~~~~~---------~-~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~----~~~~~~v~~~i~~ 125 (234)
T cd08570 60 IIDDSTWDELSHLRTIEE---------P-HQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP----EILFKLIAEMLAV 125 (234)
T ss_pred EeccCCHHHHhhcccccC---------C-CccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH----HHHHHHHHHHHHh
Confidence 799999999999988631 2 368999999999984 35799999964321 1466778888887
Q ss_pred cC-------CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccC
Q 004721 248 VV-------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPV 320 (733)
Q Consensus 248 ~~-------~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~ 320 (733)
++ .++++||++..++.+++..| +.+++++..... ....+ +.. ...+.++++.+..+..
T Consensus 126 ~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p--~~~~~~l~~~~~--------~~~~~---~~~-~~~~~~~~~~~~~~~~- 190 (234)
T cd08570 126 KPDLDFWRERIILGLWHLDFLKYGKEVLP--GFPVFHIGFSLD--------YARHF---LNY-SEKLVGISMHFVSLWG- 190 (234)
T ss_pred cCCcccccCCEEEEeCCHHHHHHHHHhCC--CCCeEEEEcCHH--------HHHHH---hcc-ccccceEEeeeehhhc-
Confidence 64 24899999999999999998 666665211100 00000 000 0012233332221110
Q ss_pred CCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 321 DESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 321 ~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
. .++++++.+|++|++|++||||++ ++|++++++| |||||||+|
T Consensus 191 -----~-~~~~~v~~~~~~gl~v~~wTvn~~------------~~~~~l~~~g---vdgiiTD~P 234 (234)
T cd08570 191 -----P-FGQAFLPELKKNGKKVFVWTVNTE------------EDMRYAIRLG---VDGVITDDP 234 (234)
T ss_pred -----c-cCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHHCC---CCEEEeCCC
Confidence 0 257899999999999999999975 7899999999 999999998
No 63
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=3.3e-41 Score=357.32 Aligned_cols=252 Identities=15% Similarity=0.169 Sum_probs=180.7
Q ss_pred CEEEEeCCCCCCCC--------ccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccc
Q 004721 92 PFVVARGGFSGIFP--------DSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYL 163 (733)
Q Consensus 92 ~~viaHRG~~~~~p--------ENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~ 163 (733)
+.||||||+++.+| |||++||+.|+++|+| +||+|||+||||++||+||.+|+|| ++.+
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d--~vE~DV~lTkDg~~VV~HD~~l~rt-~~~~---------- 68 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGAS--YVEVDVQLTKDLVPVIYHDFLVSET-GTDV---------- 68 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCC--EEEEEEEEccCCEEEEeCCCeeccC-CCCC----------
Confidence 57999999999999 9999999999999999 9999999999999999999999995 5544
Q ss_pred cCCCCCCccccccCCHHhhcccccccccc-CCCCCCC----CC--CcccccHHHHHHhhCC-CceEeeccCchhhhhcC-
Q 004721 164 VNGVPTPGWFSIDYTLNDLSNIILNQGVY-SRTDKFD----GN--GFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHN- 234 (733)
Q Consensus 164 ~~g~~~~g~~v~d~T~~eL~~l~~~~~~~-~~~~~~~----g~--~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~- 234 (733)
.|.++||+||++++.+.... +.+..|. |. .++||||+|+|+.++. ++++||||.+.......
T Consensus 69 ---------~v~~lt~~eL~~ld~~~~~~~~~~~~~~~~~~g~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~ 139 (286)
T cd08606 69 ---------PIHDLTLEQFLHLSRMKYTVDFKKKGFKGNSRGHSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAEEE 139 (286)
T ss_pred ---------ccccCCHHHHHhhhcccccccccccCCCCcccccccccCCCcHHHHHHhCCCccceEEEEecCCcchhhhc
Confidence 69999999999998432110 1222333 31 1469999999999964 78999999754221110
Q ss_pred ---------CcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHH
Q 004721 235 ---------LSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTF 302 (733)
Q Consensus 235 ---------~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 302 (733)
..+++.+++++++++. ++++||++++|+.++++.| +.+++++ ...... +........+......
T Consensus 140 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p--~~~~~~l-~~~~~~-~~~~~~~~~~~~~~~~ 215 (286)
T cd08606 140 EVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQP--GYPVLFL-TEAGKA-PDMDVRAASLQEAIRF 215 (286)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCc--CCCEEEE-eCCCCC-ccCCchhhcHHHHHHH
Confidence 1356788999999876 5899999999999999998 6777763 321110 0000000000000011
Q ss_pred HHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeec--CCCCCcccCCCCChHHHHHHHHhcCCcccce
Q 004721 303 IKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSVDG 379 (733)
Q Consensus 303 ~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTv--n~~~~~~~~~~~d~~~~~~~l~~~G~~~VDg 379 (733)
... .+.++.+.... ...++.+|+.+|++|++|++||| |+ .++|++++++| |||
T Consensus 216 ~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~Gl~v~~WTv~~n~------------~~~~~~l~~~G---Vdg 271 (286)
T cd08606 216 AKQWNLLGLVSAAEP---------LVMCPRLIQVVKRSGLVCVSYGVLNND------------PENAKTQVKAG---VDA 271 (286)
T ss_pred HHHCCCeEEEechHH---------hhhChHHHHHHHHCCcEEEEECCccCC------------HHHHHHHHHcC---CCE
Confidence 100 12222222111 12257899999999999999999 54 38899999999 999
Q ss_pred EEecCCCCccccch
Q 004721 380 VLSDFPLTPSAAVD 393 (733)
Q Consensus 380 IiTD~P~~~~~~l~ 393 (733)
||||+|+.+++.++
T Consensus 272 IiTD~p~~~~~~~~ 285 (286)
T cd08606 272 VIVDSVLAIRRGLT 285 (286)
T ss_pred EEECCHHHHHHHhc
Confidence 99999999887653
No 64
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3.4e-41 Score=350.09 Aligned_cols=240 Identities=20% Similarity=0.214 Sum_probs=182.0
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+ .
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d--~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~~-------------------~ 59 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGAD--VLETDVHATKDGVLVVIHDETLDRTTDGTG-------------------P 59 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeECCCCCEEEECCCccccccCCCC-------------------c
Confidence 6899999999999999999999999999 999999999999999999999999999876 7
Q ss_pred cccCCHHhhccccccccccCCCC---CCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTD---KFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~---~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~ 250 (733)
+.++||+||++++++.++...+. .+...+++||||+|+|+++++..++||+|.+. ..+++.+++++++++.
T Consensus 60 i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~ieiK~~~------~~~~~~~~~~l~~~~~ 133 (249)
T cd08561 60 VADLTLAELRRLDAGYHFTDDGGRTYPYRGQGIRIPTLEELFEAFPDVRLNIEIKDDG------PAAAAALADLIERYGA 133 (249)
T ss_pred hhhCCHHHHhhcCcCccccCccccccccCCCCccCCCHHHHHHhCcCCcEEEEECCCc------hhHHHHHHHHHHHcCC
Confidence 99999999999999876522111 11222479999999999998889999999653 1478899999999875
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHh-hHHH-HHhhcccccCCccccccCCCccC
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLK-NLTF-IKTFASGILVPKDYIWPVDESLY 325 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~-~~~~a~~i~~~~~~i~~~~~~~~ 325 (733)
++++||+.+.++++++..| +.++.++..... .+..... ++.. .......+.++... .++
T Consensus 134 ~~~~~~~Sf~~~~l~~~~~~~p--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 197 (249)
T cd08561 134 QDRVLVASFSDRVLRRFRRLCP--RVATSAGEGEVA--------AFVLASRLGLGSLYSPPYDALQIPVRY------GGV 197 (249)
T ss_pred CCcEEEEECCHHHHHHHHHHCC--CcceeccHHHHH--------HHHHHhhcccccccCCCCcEEEcCccc------CCe
Confidence 4999999999999999998 566554110000 0000000 0000 00011111111110 012
Q ss_pred CCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCcccc
Q 004721 326 LLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 326 ~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~ 391 (733)
...++++++.+|++|+.|++||||++ ++|++++++| ||||+||+|++++++
T Consensus 198 ~~~~~~~v~~~~~~G~~v~vWTVN~~------------~~~~~l~~~g---VdgIiTD~p~~~~~~ 248 (249)
T cd08561 198 PLVTPRFVRAAHAAGLEVHVWTVNDP------------AEMRRLLDLG---VDGIITDRPDLLLEV 248 (249)
T ss_pred ecCCHHHHHHHHHCCCEEEEEecCCH------------HHHHHHHhcC---CCEEEcCCHHHHHhh
Confidence 23458899999999999999999874 8999999999 999999999987654
No 65
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=7.4e-41 Score=344.80 Aligned_cols=236 Identities=23% Similarity=0.235 Sum_probs=181.3
Q ss_pred eEEecCCCCCC-CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 409 LVISKNGASGD-YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 409 ~iIaHRG~~~~-~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
+||||||+++. +||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|| ++| .
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~------------------~~~-~ 61 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTN------------------GKG-K 61 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccC------------------CCC-c
Confidence 48999999999 999999999999999999999999999999999999999999999 667 7
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
|.++|++||++++++.+. ..+. +++||||+|+|+++++. ..++||+|.+ ..+.+++
T Consensus 62 v~~~t~~el~~l~~~~~~----------~~~~-~~~iptL~evl~~~~~~---~~l~iEiK~~----------~~~~~~~ 117 (240)
T cd08566 62 VSDLTLAEIRKLRLKDGD----------GEVT-DEKVPTLEEALAWAKGK---ILLNLDLKDA----------DLDEVIA 117 (240)
T ss_pred hhhCcHHHHHhCCcCCCc----------CCCC-CCCCCCHHHHHHhhhcC---cEEEEEECch----------HHHHHHH
Confidence 999999999999997652 2344 48999999999999886 4899999964 2356899
Q ss_pred HHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccc-
Q 004721 568 ALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFIT- 645 (733)
Q Consensus 568 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~- 645 (733)
+++++++. ++++++||+++.++.++++ |+++++++......+ ..........+++ ..+.+. +..
T Consensus 118 ~~~~~~~~----~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----~~~~~~~~~~~~~--~~~~~~---~~~~ 183 (240)
T cd08566 118 LVKKHGAL----DQVIFKSYSEEQAKELRALAPEVMLMPIVRDAEDL-----DEEEARAIDALNL--LAFEIT---FDDL 183 (240)
T ss_pred HHHHcCCc----ccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcch-----hHHHHhcccccce--EEEEEe---cccc
Confidence 99999987 7999999999999999999 999999998543211 1000111111111 112221 111
Q ss_pred cchHHHHHHHHC-CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 646 SATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 646 ~~~~~v~~~~~~-Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
..+..+..++++ |++|++||+|+...........+...++.+++ ++|||||+||+|
T Consensus 184 ~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~Gvd~I~TD~P 240 (240)
T cd08566 184 DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELV-DAGVDVIQTDRP 240 (240)
T ss_pred ccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHH-HcCCCEEecCCC
Confidence 246678888887 99999999996421000000112233788886 999999999998
No 66
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=4.6e-41 Score=352.34 Aligned_cols=243 Identities=19% Similarity=0.159 Sum_probs=180.4
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCC--CCC
Q 004721 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGV--PTP 170 (733)
Q Consensus 93 ~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~--~~~ 170 (733)
.||||||+++.+||||++||+.|++.||| +||+|||+||||++||+||.+|+|+|+... +|. +..
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad--~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~-----------~~~~~~~~ 68 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVD--TLELDLVLTKDGVIVVSHDPKLNPDITRDP-----------DGAWLPYE 68 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCC--EEEEEEEEcCCCCEEEeCCCccCcceeecC-----------CCCccccc
Confidence 48999999999999999999999999999 999999999999999999999998653211 010 111
Q ss_pred ccccccCCHHhhccccccccccC--CCCCCCC----CCcccccHHHHHHhhCC-----CceEeeccCchhhh---hcCCc
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYS--RTDKFDG----NGFQILTVQDMARQIKP-----PGLWLNIQHDAFYA---QHNLS 236 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~--~~~~~~g----~~~~iptL~e~l~~~~~-----~~l~iEiK~~~~~~---~~~~~ 236 (733)
+..|+++||+||++|+++.++.. ....|.+ .+++||||+|+|++++. +.++||+|.+.... .....
T Consensus 69 ~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 148 (263)
T cd08567 69 GPALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEE 148 (263)
T ss_pred CcchhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHH
Confidence 23799999999999999887521 1222221 13799999999999964 67999999653221 01234
Q ss_pred HHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCC
Q 004721 237 MRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVP 313 (733)
Q Consensus 237 ~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~ 313 (733)
+++.++++++++++ ++++||+++.++.++++.| +.+++++...... ..+... +.. ..+..+++.
T Consensus 149 ~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~l~~~~~~------~~~~~~---~~~--~~~~~~~~~ 215 (263)
T cd08567 149 FVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAP--DIPTVALTEETTL------GNLPRA---AKK--LGADIWSPY 215 (263)
T ss_pred HHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCC--CccEEEEecCCcc------cCHHHH---HHH--hCCcEEecc
Confidence 77899999999876 4899999999999999998 6777763221100 011111 010 112333333
Q ss_pred ccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 314 KDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 314 ~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
+. ..++++++.+|++|+.|++||||+. ++|++++++| ||||+||+|++
T Consensus 216 ~~-----------~~~~~~i~~~~~~G~~v~vwtvn~~------------~~~~~~~~~G---vdgi~TD~P~~ 263 (263)
T cd08567 216 FT-----------LVTKELVDEAHALGLKVVPWTVNDP------------EDMARLIDLG---VDGIITDYPDL 263 (263)
T ss_pred hh-----------hcCHHHHHHHHHCCCEEEEecCCCH------------HHHHHHHHcC---CCEEEcCCCCC
Confidence 22 1257899999999999999999864 7899999999 99999999984
No 67
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=8.1e-41 Score=344.51 Aligned_cols=232 Identities=19% Similarity=0.173 Sum_probs=175.5
Q ss_pred EEEEeCCCCCC-CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCc
Q 004721 93 FVVARGGFSGI-FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPG 171 (733)
Q Consensus 93 ~viaHRG~~~~-~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g 171 (733)
+||||||+++. +||||++||+.|++.|+| +||+|||+||||++||+||.+|+|+|++.+
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d--~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~~------------------ 60 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGAD--IVEIDVRRTKDGVLVLMHDDTLDRTTNGKG------------------ 60 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEECCCCCccccCCCC------------------
Confidence 48999999999 999999999999999999 999999999999999999999999999876
Q ss_pred cccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC-CceEeeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 004721 172 WFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP-PGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (733)
Q Consensus 172 ~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~ 250 (733)
.+.++||+||++++++.|+ ..|.+ ++||||+|+|+++++ ..++||+|.+ ..+.+++++++++.
T Consensus 61 -~v~~~t~~el~~l~~~~~~----~~~~~--~~iptL~evl~~~~~~~~l~iEiK~~---------~~~~~~~~~~~~~~ 124 (240)
T cd08566 61 -KVSDLTLAEIRKLRLKDGD----GEVTD--EKVPTLEEALAWAKGKILLNLDLKDA---------DLDEVIALVKKHGA 124 (240)
T ss_pred -chhhCcHHHHHhCCcCCCc----CCCCC--CCCCCHHHHHHhhhcCcEEEEEECch---------HHHHHHHHHHHcCC
Confidence 7999999999999999875 34455 899999999999875 6899999964 24678889998876
Q ss_pred ---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCCccCC
Q 004721 251 ---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYL 326 (733)
Q Consensus 251 ---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~~~~~ 326 (733)
++++||+++.+++++++.| +.++++ +..... ....... ..+.. .+.++.+.....
T Consensus 125 ~~~v~~~sf~~~~l~~~~~~~p--~~~~~~-l~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~--------- 183 (240)
T cd08566 125 LDQVIFKSYSEEQAKELRALAP--EVMLMP-IVRDAE------DLDEEEA---RAIDALNLLAFEITFDDL--------- 183 (240)
T ss_pred cccEEEEECCHHHHHHHHHhCC--CCEEEE-EEccCc------chhHHHH---hcccccceEEEEEecccc---------
Confidence 4899999999999999998 677665 322110 0000000 00000 112222222110
Q ss_pred CCChHHHHHHHHc-CCeEEEeecCCCCCccc-CCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 327 LPHTTIVLDAHKE-RLEVFASNFANDIPISF-NYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 327 ~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~-~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
..+..+.++|+. |++|++||+|++..... ....++.++|++++++| ||||+||+|
T Consensus 184 -~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---vd~I~TD~P 240 (240)
T cd08566 184 -DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELVDAG---VDVIQTDRP 240 (240)
T ss_pred -ccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHHHcC---CCEEecCCC
Confidence 135688888887 99999999996311000 00012458999999999 999999998
No 68
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=1.8e-40 Score=350.81 Aligned_cols=246 Identities=15% Similarity=0.113 Sum_probs=174.8
Q ss_pred EEEeCCCCC-C----------CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCcccccccccccc
Q 004721 94 VVARGGFSG-I----------FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNY 162 (733)
Q Consensus 94 viaHRG~~~-~----------~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 162 (733)
||||||+.. . +||||++||+.|++.||| +||+|||+||||++||+||++|+|+|++..
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad--~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~--------- 70 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGAD--FVEFDVQVTRDGVPVIWHDDFIVVERGGEV--------- 70 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCC--EEEEEEEECcCCeEEEECCCceecccCCCc---------
Confidence 899999764 3 359999999999999999 999999999999999999999999998621
Q ss_pred ccCCCCCCccccccCCHHhhccccccccccCCC----------CC----CCCCCcccccHHHHHHhhCC-CceEeeccCc
Q 004721 163 LVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT----------DK----FDGNGFQILTVQDMARQIKP-PGLWLNIQHD 227 (733)
Q Consensus 163 ~~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~----------~~----~~g~~~~iptL~e~l~~~~~-~~l~iEiK~~ 227 (733)
..| .|.++||+||++|+++.++...+ .. +...+++||||+|+|++++. .+++||||.+
T Consensus 71 ------~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~ 143 (282)
T cd08605 71 ------ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFG 143 (282)
T ss_pred ------Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecC
Confidence 012 69999999999999987542100 00 11114799999999999864 6899999965
Q ss_pred hhhh---hcCCcHHHHHHHHHhhcCC---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHH
Q 004721 228 AFYA---QHNLSMRSFVLSVSRSVVV---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLT 301 (733)
Q Consensus 228 ~~~~---~~~~~~~~~v~~~l~~~~~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 301 (733)
.... +.-...++.+++++++++. ++|+||++++|++++++.| ..+++++ ............. ..+.....
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p--~~~~~~L-~~~~~~~~~~~~~-~~~~~~~~ 219 (282)
T cd08605 144 DDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQS--LYPVMFL-TDCGPYTHNDPRR-NSIEAAIQ 219 (282)
T ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCc--cCCEEEE-ecCCCccccCchh-hhHHHHHH
Confidence 3211 0001134678888888865 5999999999999999998 7788863 3211100000000 00000001
Q ss_pred HHHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeec--CCCCCcccCCCCChHHHHHHHHhcCCcccc
Q 004721 302 FIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNF--ANDIPISFNYSYDPLTEYLSFIDNGDFSVD 378 (733)
Q Consensus 302 ~~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTv--n~~~~~~~~~~~d~~~~~~~l~~~G~~~VD 378 (733)
.... .+.++++.+..+ ..++++|+++|++|++|++||| |++ ++|++++++| ||
T Consensus 220 ~~~~~~~~~~~~~~~~l---------~~~~~~v~~~~~~Gl~v~vWTv~~n~~------------~~~~~l~~~G---Vd 275 (282)
T cd08605 220 VALEGGLQGIVSEVKVL---------LRNPTAVSLVKASGLELGTYGKLNNDA------------EAVERQADLG---VD 275 (282)
T ss_pred HHHHcCCceEEecHHHh---------hcCcHHHHHHHHcCcEEEEeCCCCCCH------------HHHHHHHHcC---CC
Confidence 1111 234454443321 1247899999999999999998 653 8999999999 99
Q ss_pred eEEecCC
Q 004721 379 GVLSDFP 385 (733)
Q Consensus 379 gIiTD~P 385 (733)
|||||++
T Consensus 276 gIiTD~~ 282 (282)
T cd08605 276 GVIVDHV 282 (282)
T ss_pred EEEeCCC
Confidence 9999986
No 69
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=4.6e-40 Score=342.01 Aligned_cols=260 Identities=12% Similarity=0.129 Sum_probs=185.4
Q ss_pred CCcccccCCCCCEEEEeCCCCCC----------------------CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEE
Q 004721 81 TSRWQTLTGDPPFVVARGGFSGI----------------------FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGI 138 (733)
Q Consensus 81 ~~~~~~~~~~~~~viaHRG~~~~----------------------~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lV 138 (733)
++.+.......|+||||||++.. +||||++||++|++.|+| +||+|||+||||++|
T Consensus 13 ~~~~~~~~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad--~IE~DV~lTkDg~lV 90 (309)
T cd08613 13 TSLLAPPPGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGAD--VVELDVHPTKDGEFA 90 (309)
T ss_pred hhhhccCCCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCC--EEEEEEEEccCCeEE
Confidence 44555566778999999999764 399999999999999999 999999999999999
Q ss_pred EecCCCCccccCccccccccccccccCCCCCCccccccCCHHhhccccccccccCCC-C--CCCCC-CcccccHHHHHHh
Q 004721 139 CFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGVYSRT-D--KFDGN-GFQILTVQDMARQ 214 (733)
Q Consensus 139 v~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~T~~eL~~l~~~~~~~~~~-~--~~~g~-~~~iptL~e~l~~ 214 (733)
|+||++|+|+|++++ .|.|+||+||++|+++.|+.... . .|.+. ..+||||+|+|++
T Consensus 91 V~HD~tL~R~T~g~g-------------------~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~ 151 (309)
T cd08613 91 VFHDWTLDCRTDGSG-------------------VTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAA 151 (309)
T ss_pred EEecCccccccCCCC-------------------chhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHh
Confidence 999999999999876 79999999999999998764311 1 12321 2479999999999
Q ss_pred hCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCCc--eeccCC--HHHHHHHHHhcCCCcccchhhhcCCCccCCCCC
Q 004721 215 IKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVVN--YISSPE--VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTN 290 (733)
Q Consensus 215 ~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~--~i~SF~--~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~ 290 (733)
++..+++||||.+.. ...+.+++++++++.. .+.||+ +..+++++++.| +.++.- ....
T Consensus 152 ~~~~~l~IEiK~~~~------~~~~~v~~~i~~~~~~r~~v~sf~s~~~~l~~~r~l~P--~~~~~s----~~~~----- 214 (309)
T cd08613 152 FPDRRFLINFKSDDA------AEGELLAEKLATLPRKRLQVLTVYGGDKPIAALRELTP--DLRTLS----KASM----- 214 (309)
T ss_pred cCCCcEEEEeCCCCc------cHHHHHHHHHHhcCccceEEEEEECCHHHHHHHHHHCC--CCceec----ccch-----
Confidence 988889999996531 2457888999988763 667777 888999999998 444331 1100
Q ss_pred cchhHHHhhHHHHHhhcccccCCc----cccccCCCccCCCC-ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHH
Q 004721 291 QTYGSLLKNLTFIKTFASGILVPK----DYIWPVDESLYLLP-HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTE 365 (733)
Q Consensus 291 ~~~~~~~~~l~~~~~~a~~i~~~~----~~i~~~~~~~~~~~-~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~ 365 (733)
. .. .+..+...-.+..|.. ...+|......+.. ++.|++++|++|.+|++|.-.+- ..+..+.|++++
T Consensus 215 ~--~~---~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~--~~~~~~~d~~~~ 287 (309)
T cd08613 215 K--DC---LIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTG--GEFSEGFDTPED 287 (309)
T ss_pred H--HH---HHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccC--CcccCCCCCHHH
Confidence 0 00 0111111112222222 11223222222333 68899999999999999921000 001112345699
Q ss_pred HHHHHhcCCcccceEEecCCCCc
Q 004721 366 YLSFIDNGDFSVDGVLSDFPLTP 388 (733)
Q Consensus 366 ~~~l~~~G~~~VDgIiTD~P~~~ 388 (733)
|+++.+.| +|||+||+|+.+
T Consensus 288 ~~~l~~~~---~~gi~T~r~~~l 307 (309)
T cd08613 288 LKRLPEGF---TGYIWTNKIEAL 307 (309)
T ss_pred HHHHHhhC---CCeEEeCCHhhc
Confidence 99999999 999999999975
No 70
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.6e-39 Score=332.11 Aligned_cols=224 Identities=17% Similarity=0.091 Sum_probs=174.6
Q ss_pred ceEEecCCCCCC---CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccC
Q 004721 408 LLVISKNGASGD---YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGS 484 (733)
Q Consensus 408 ~~iIaHRG~~~~---~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~ 484 (733)
+.+|||||+++. +||||++||++|++.|+ +||+|||+||||++||+||.+|+|+|| ++
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~------------------~~ 64 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTG------------------VE 64 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcC------------------CC
Confidence 457999999874 79999999999999999 899999999999999999999999999 66
Q ss_pred cccccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHH
Q 004721 485 GIFSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNS 564 (733)
Q Consensus 485 g~~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (733)
| .|.++|++||++++++. . +++||||+|+|+.+++. ..++||||.+... ...+++.
T Consensus 65 ~-~v~~~t~~eL~~l~~~~---------------~-~~~iPtL~evl~~~~~~---~~l~iEiK~~~~~----~~~l~~~ 120 (237)
T cd08585 65 G-RVEELTAAELRALRLLG---------------T-DEHIPTLDEVLELVAGR---VPLLIELKSCGGG----DGGLERR 120 (237)
T ss_pred C-ccccCCHHHHhcCCCCC---------------C-CCCCCCHHHHHHHhccC---ceEEEEEccCCcc----chHHHHH
Confidence 6 79999999999998752 1 47899999999999864 4799999975431 2357888
Q ss_pred HHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHH--HHHH--HhHhcCCCcccccC
Q 004721 565 VMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIED--IKKF--ADSVVLSKESVYPL 639 (733)
Q Consensus 565 v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~--i~~~--a~~i~~~~~~i~~~ 639 (733)
+++++++++ .+++++||++..|+++++. |++++++++.....+........ .... ....++ ..+.+.
T Consensus 121 v~~~l~~~~------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 192 (237)
T cd08585 121 VLAALKDYK------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRP--DFIAYH 192 (237)
T ss_pred HHHHHHhcC------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCC--CEEEeC
Confidence 999998863 4899999999999999999 99999999854321110000000 0000 001122 122221
Q ss_pred CccccccchHHHHHHHHC-CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEe
Q 004721 640 NSAFITSATDIVQRLQSF-KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (733)
Q Consensus 640 ~~~~l~~~~~~v~~~~~~-Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT 699 (733)
+...++++++.+|++ |++|++||||++. ++.+++ ++|+++||-
T Consensus 193 ---~~~~~~~~v~~~~~~~G~~v~vWTVnd~~-------------~~~~l~-~~G~~~i~~ 236 (237)
T cd08585 193 ---LDDLPNPFVTLARALLGMPVIVWTVRTEE-------------DIARLK-QYADNIIFE 236 (237)
T ss_pred ---hhhCcCHHHHHHHHhcCCcEEEEeCCCHH-------------HHHHHH-HhCCeeEeC
Confidence 112367899999999 9999999999997 899987 999999873
No 71
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.3e-39 Score=332.41 Aligned_cols=225 Identities=16% Similarity=0.064 Sum_probs=169.7
Q ss_pred CEEEEeCCCCCC---CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCC
Q 004721 92 PFVVARGGFSGI---FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVP 168 (733)
Q Consensus 92 ~~viaHRG~~~~---~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~ 168 (733)
+.+|||||+++. +||||++||+.|++.|+ +||+|||+||||++||+||.+|+|+|++++
T Consensus 4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~---~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~~--------------- 65 (237)
T cd08585 4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY---GIELDVQLTADGEVVVFHDDNLKRLTGVEG--------------- 65 (237)
T ss_pred CCceECCCCCCCCCCCCccHHHHHHHHHHcCC---cEEEEeeECCCCCEEEeccchHhhhcCCCC---------------
Confidence 348999999874 79999999999999995 799999999999999999999999999876
Q ss_pred CCccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhh
Q 004721 169 TPGWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (733)
Q Consensus 169 ~~g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~ 247 (733)
.|.++||+||++|+++. . +++||||+|+|++++ +..++||+|.+... ...+++.+++++++
T Consensus 66 ----~v~~~t~~eL~~l~~~~---------~--~~~iPtL~evl~~~~~~~~l~iEiK~~~~~---~~~l~~~v~~~l~~ 127 (237)
T cd08585 66 ----RVEELTAAELRALRLLG---------T--DEHIPTLDEVLELVAGRVPLLIELKSCGGG---DGGLERRVLAALKD 127 (237)
T ss_pred ----ccccCCHHHHhcCCCCC---------C--CCCCCCHHHHHHHhccCceEEEEEccCCcc---chHHHHHHHHHHHh
Confidence 79999999999999863 1 479999999999996 46799999965421 23578889999988
Q ss_pred cCC-ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhH-HHhhHH-HHHhhcccccCCccccccCCCcc
Q 004721 248 VVV-NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS-LLKNLT-FIKTFASGILVPKDYIWPVDESL 324 (733)
Q Consensus 248 ~~~-~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~-~~~~~a~~i~~~~~~i~~~~~~~ 324 (733)
++. ++|+||+++.++++++..| +++++++. ....... ....+.. +...+. .....++.+.+.+..
T Consensus 128 ~~~~v~i~SF~~~~l~~l~~~~p--~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 195 (237)
T cd08585 128 YKGPAAIMSFDPRVVRWFRKLAP--GIPRGQLS-EGSNDEA-DPAFWNEALLSALFSNLLTRPDFIAYHLDD-------- 195 (237)
T ss_pred cCCCEEEEECCHHHHHHHHHHCC--CCCEEEEe-cCCcccc-cccchhHHHHHhhhhhhccCCCEEEeChhh--------
Confidence 753 5899999999999999998 77877633 2111000 0000000 000000 000112222222221
Q ss_pred CCCCChHHHHHHHHc-CCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEe
Q 004721 325 YLLPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (733)
Q Consensus 325 ~~~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiT 382 (733)
.++++|+.+|++ |++|++||||++ ++|++++++| +|+||-
T Consensus 196 ---~~~~~v~~~~~~~G~~v~vWTVnd~------------~~~~~l~~~G---~~~i~~ 236 (237)
T cd08585 196 ---LPNPFVTLARALLGMPVIVWTVRTE------------EDIARLKQYA---DNIIFE 236 (237)
T ss_pred ---CcCHHHHHHHHhcCCcEEEEeCCCH------------HHHHHHHHhC---CeeEeC
Confidence 246799999999 999999999875 8999999999 999984
No 72
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=6.1e-39 Score=330.67 Aligned_cols=231 Identities=13% Similarity=0.132 Sum_probs=173.8
Q ss_pred EEecCCC--CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccc
Q 004721 410 VISKNGA--SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIF 487 (733)
Q Consensus 410 iIaHRG~--~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~ 487 (733)
+|||||+ ++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+.+... ..++ .
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~--------------~~~~-~ 65 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGL--------------PTSK-N 65 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCC--------------cccc-c
Confidence 4899996 688999999999999999999999999999999999999999987532100 0144 6
Q ss_pred ccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHH
Q 004721 488 SFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVME 567 (733)
Q Consensus 488 i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~ 567 (733)
+.++|++||++++.. . +++||||+|+|+++++.++ +.++||||.+.... -..+.+.+++
T Consensus 66 i~~~t~~el~~~~~~----------------~-~~~iptL~evl~~~~~~~~-~~l~iEiK~~~~~~---~~~~~~~l~~ 124 (237)
T cd08583 66 TKPLSYEEFKSKKIY----------------G-KYTPMDFKDVIDLLKKYPD-VYIVTDTKQDDDND---IKKLYEYIVK 124 (237)
T ss_pred ccCCCHHHHhhcccc----------------C-CCCCCCHHHHHHHHHhCCC-eEEEEEecCCCccc---HHHHHHHHHH
Confidence 899999999886642 2 3789999999999986434 37999999653210 0135668889
Q ss_pred HHHHc--CCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccc
Q 004721 568 ALGNA--GYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (733)
Q Consensus 568 ~l~~~--~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l 644 (733)
.++++ ++. +||+++||++.+|+.+++. |....+++...... ..+..+..++..++. ..+.+.. .
T Consensus 125 ~~~~~~~~~~----~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~---~ 191 (237)
T cd08583 125 EAKEVDPDLL----DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDS----IRLDEIIAFCYENGI--KAVTISK---N 191 (237)
T ss_pred HHHhhccccc----ceeEEEecCHHHHHHHHHhCCCcceeeEeccccc----cchHHHHHHHHHcCC--cEEEech---h
Confidence 99886 466 7999999999999999999 87666555422100 011222223333322 2233221 1
Q ss_pred ccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChH
Q 004721 645 TSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (733)
Q Consensus 645 ~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~ 703 (733)
..++.+++.+|++|+.|++||||++. +|.+++ ++|||||+||+|.
T Consensus 192 ~~~~~~v~~~~~~Gl~v~vwTVn~~~-------------~~~~l~-~~GVdgiiTD~~~ 236 (237)
T cd08583 192 YVNDKLIEKLNKAGIYVYVYTINDLK-------------DAQEYK-KLGVYGIYTDFLT 236 (237)
T ss_pred hcCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCCCC
Confidence 34689999999999999999999987 899897 9999999999984
No 73
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=4.2e-38 Score=324.45 Aligned_cols=224 Identities=11% Similarity=0.145 Sum_probs=164.5
Q ss_pred EEEeCCC--CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCcccc-CccccccccccccccCCCCCC
Q 004721 94 VVARGGF--SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS-NIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 94 viaHRG~--~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt-~~~~~~~~~~~~~~~~g~~~~ 170 (733)
+|||||+ ++.+||||++||+.|++.|+| +||+|||+||||++||+||++++|+. .+.. ..
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d--~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~~---------------~~ 63 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYR--VFEVDLSLTSDGVLVARHSWDESLLKQLGLP---------------TS 63 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCC--EEEEEeeEccCCCEEEEECCcCchhhhcCCc---------------cc
Confidence 4899996 789999999999999999999 99999999999999999999998852 2210 00
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC---CceEeeccCchhhhhcCCcHHHHHHHHHhh
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP---PGLWLNIQHDAFYAQHNLSMRSFVLSVSRS 247 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~---~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~ 247 (733)
+ .+.++|++||++++.. + +++||||+|+|+++++ +.++||||.+.. .....++..+++.+++
T Consensus 64 ~-~i~~~t~~el~~~~~~----------~--~~~iptL~evl~~~~~~~~~~l~iEiK~~~~--~~~~~~~~~l~~~~~~ 128 (237)
T cd08583 64 K-NTKPLSYEEFKSKKIY----------G--KYTPMDFKDVIDLLKKYPDVYIVTDTKQDDD--NDIKKLYEYIVKEAKE 128 (237)
T ss_pred c-cccCCCHHHHhhcccc----------C--CCCCCCHHHHHHHHHhCCCeEEEEEecCCCc--ccHHHHHHHHHHHHHh
Confidence 1 5889999999987643 2 3799999999999862 568999996432 1111356678888887
Q ss_pred cC--C---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCC
Q 004721 248 VV--V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVD 321 (733)
Q Consensus 248 ~~--~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~ 321 (733)
++ + ++++||+++.|+.+++..| ....++....... ...... +..+.. .+.++++.+..
T Consensus 129 ~~~~~~~~v~~~SF~~~~L~~~~~~~p--~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~----- 192 (237)
T cd08583 129 VDPDLLDRVIPQIYNEEMYEAIMSIYP--FKSVIYTLYRQDS------IRLDEI---IAFCYENGIKAVTISKNY----- 192 (237)
T ss_pred hcccccceeEEEecCHHHHHHHHHhCC--CcceeeEeccccc------cchHHH---HHHHHHcCCcEEEechhh-----
Confidence 53 3 4899999999999999987 3333332211110 000110 111111 23334444332
Q ss_pred CccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCC
Q 004721 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (733)
Q Consensus 322 ~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~ 386 (733)
.++.+++++|++|++|++||||++ ++|++++++| |||||||+|.
T Consensus 193 ------~~~~~v~~~~~~Gl~v~vwTVn~~------------~~~~~l~~~G---VdgiiTD~~~ 236 (237)
T cd08583 193 ------VNDKLIEKLNKAGIYVYVYTINDL------------KDAQEYKKLG---VYGIYTDFLT 236 (237)
T ss_pred ------cCHHHHHHHHHCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEeCCCC
Confidence 247899999999999999999875 8999999999 9999999985
No 74
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=4.9e-38 Score=328.24 Aligned_cols=242 Identities=24% Similarity=0.316 Sum_probs=192.1
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
.|+||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||++++|||++.+
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad--~iE~Dv~lTkDg~lVv~HD~~~drt~~~~~----------------- 65 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGAD--YIELDVQLTKDGVLVVIHDETLDRTTNGLG----------------- 65 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCC--EEEeeccCccCCcEEEecccchhhhccCcc-----------------
Confidence 5789999999999999999999999999999 999999999999999999999999999876
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhhcC
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVV 249 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~ 249 (733)
.+.++|++|+++++.+.+. ...+ + +.+|||+|+++.+. ++++++|+|.+........ ....++..+.+..
T Consensus 66 --~~~~~~~~~~~~~~~~~~~---~~~~-~--~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~~~-~~~~~~~~~~~~~ 136 (257)
T COG0584 66 --TVRDLTLAELKRLDAGSFR---IPTF-G--EEIPTLEELLEATGRKIGLYIEIKSPGFHPQEGK-ILAALLALLKRYG 136 (257)
T ss_pred --ccccCChhhhcCcccCccc---CCCC-C--CccCCHHHHHHHhcccCCeEEEecCCCcccchhh-hHHHHHHHHHHhc
Confidence 6779999999999966542 3444 4 79999999999884 6899999998765543311 4455555555542
Q ss_pred ------CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHH--HhhHHHHHhhcccccCCccccccCC
Q 004721 250 ------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSL--LKNLTFIKTFASGILVPKDYIWPVD 321 (733)
Q Consensus 250 ------~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~~~~~a~~i~~~~~~i~~~~ 321 (733)
.++++||++..+.++++..| .+++++ +..... .|..+ ...+..+..++.++++.+..+.+.
T Consensus 137 ~~~~~~~v~~~Sf~~~~l~~~~~~~p--~~~~~~-l~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 205 (257)
T COG0584 137 GTAADDRVILSSFDHAALKRIKRLAP--DLPLGL-LLDATD-------QYDWMELPRALKEVALYADGVGPDWAMLAEL- 205 (257)
T ss_pred ccCCCCceEEEecCHHHHHHHHHhCc--CCceEE-EEcccc-------hhhhhhccchhhHHHhhhcccCcccceeccc-
Confidence 35999999999999999998 678876 332210 01111 124556677888888776554321
Q ss_pred CccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccch
Q 004721 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVD 393 (733)
Q Consensus 322 ~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~ 393 (733)
.+.++..+|..|+.|++||||++ +.++.+.+.| ||||+||+|+.+.+.+.
T Consensus 206 -------~~~~v~~~~~~gl~v~~~tv~~~------------~~~~~~~~~g---vd~i~td~p~~~~~~~~ 255 (257)
T COG0584 206 -------LTELVDDAHAAGLKVHVWTVNEE------------DDIRLLLEAG---VDGLITDFPDLAVAFLN 255 (257)
T ss_pred -------ccHHHHHHHhCCCeEEEEecCcH------------HHHHHHHHcC---CCEEEcCCHHHHHHhhc
Confidence 25799999999999999999975 4489999999 99999999998876553
No 75
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=1.4e-37 Score=324.79 Aligned_cols=247 Identities=26% Similarity=0.336 Sum_probs=195.4
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGI 486 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~ 486 (733)
.++||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|||+ +.|
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~------------------~~~- 65 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTN------------------GLG- 65 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhcc------------------Ccc-
Confidence 5789999999999999999999999999999999999999999999999999999999 666
Q ss_pred cccccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCc-HHHHH
Q 004721 487 FSFSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMS-VTNSV 565 (733)
Q Consensus 487 ~i~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~-~~~~v 565 (733)
.+.++|++|+.+++.+.+. .+.+ .+.+|||+|++..+ +. + .++++|||.+....+ .. +...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~---------~~~~--~~~ip~l~~~l~~~-~~-~-~~l~ieiK~~~~~~~---~~~~~~~~ 128 (257)
T COG0584 66 TVRDLTLAELKRLDAGSFR---------IPTF--GEEIPTLEELLEAT-GR-K-IGLYIEIKSPGFHPQ---EGKILAAL 128 (257)
T ss_pred ccccCChhhhcCcccCccc---------CCCC--CCccCCHHHHHHHh-cc-c-CCeEEEecCCCcccc---hhhhHHHH
Confidence 6889999999999955432 2334 38999999999999 42 2 389999998765432 12 45667
Q ss_pred HHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeeccc---chhhhHHHHHHHHHHhHhcCCCcccccCCc
Q 004721 566 MEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENI---RDALNQTIEDIKKFADSVVLSKESVYPLNS 641 (733)
Q Consensus 566 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~---~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~ 641 (733)
+..+.+.... ...++++++||+...+..+++. |.+++++++.... ....+..+..+..++.++++....+.+
T Consensus 129 ~~~~~~~~~~-~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--- 204 (257)
T COG0584 129 LALLKRYGGT-AADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWAMLAE--- 204 (257)
T ss_pred HHHHHHhccc-CCCCceEEEecCHHHHHHHHHhCcCCceEEEEcccchhhhhhccchhhHHHhhhcccCcccceecc---
Confidence 7777666431 1116999999999999999999 9999999998641 112334455566666666553322211
Q ss_pred cccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHh
Q 004721 642 AFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSK 711 (733)
Q Consensus 642 ~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~ 711 (733)
..+.++..+|..|+.|++||+|+++ .+..+. +.|||||+||+|+.+..++..
T Consensus 205 ----~~~~~v~~~~~~gl~v~~~tv~~~~-------------~~~~~~-~~gvd~i~td~p~~~~~~~~~ 256 (257)
T COG0584 205 ----LLTELVDDAHAAGLKVHVWTVNEED-------------DIRLLL-EAGVDGLITDFPDLAVAFLNK 256 (257)
T ss_pred ----cccHHHHHHHhCCCeEEEEecCcHH-------------HHHHHH-HcCCCEEEcCCHHHHHHhhcc
Confidence 0367899999999999999999996 466665 999999999999999887654
No 76
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=1.4e-37 Score=323.38 Aligned_cols=241 Identities=17% Similarity=0.171 Sum_probs=179.9
Q ss_pred cCCcceEEecCCCCCC----------------------CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccccc
Q 004721 404 KSANLLVISKNGASGD----------------------YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~----------------------~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~r 461 (733)
....|+||||||.+.. +||||++||++|++.|+|+||+|||+||||++||+||.+|+|
T Consensus 20 ~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R 99 (309)
T cd08613 20 PGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDC 99 (309)
T ss_pred CCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccc
Confidence 4457899999998765 399999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCCcccccccccccCcccccccCHHHHhccCccccCCC--ccccccCCcCCCCCccccCHHHHHHHHHhcCC
Q 004721 462 STNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQISNPY--FKFKLFRNPKNKNAGKFMKLSDFLEMAKNANS 539 (733)
Q Consensus 462 tt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~EL~~L~~~~~~~~--~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~ 539 (733)
+|| ++| .|.|+|++||++|+++.+.+. +..++++ ..+..+||||+|+|+++++.
T Consensus 100 ~T~------------------g~g-~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~---~~~~~~IPTL~EvL~~~~~~-- 155 (309)
T cd08613 100 RTD------------------GSG-VTRDHTMAELKTLDIGYGYTADGGKTFPFR---GKGVGMMPTLDEVFAAFPDR-- 155 (309)
T ss_pred ccC------------------CCC-chhhCCHHHHhhCCcCcccccccccccccc---cCCCCCCcCHHHHHHhcCCC--
Confidence 999 777 799999999999999765321 0011111 11124799999999999764
Q ss_pred CceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCC--HHHHHHHHhc-cCceEEEEeecccchhhh
Q 004721 540 LSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD--SSVLMKLREK-TSYELVYKVKENIRDALN 616 (733)
Q Consensus 540 ~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd--~~~L~~lk~~-p~~~~~~l~~~~~~~~~~ 616 (733)
.++||||.+.. ...+.+.++|+++++. ++.+.||+ +..+++++++ |++++.--...
T Consensus 156 --~l~IEiK~~~~-------~~~~~v~~~i~~~~~~-----r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~~------- 214 (309)
T cd08613 156 --RFLINFKSDDA-------AEGELLAEKLATLPRK-----RLQVLTVYGGDKPIAALRELTPDLRTLSKASM------- 214 (309)
T ss_pred --cEEEEeCCCCc-------cHHHHHHHHHHhcCcc-----ceEEEEEECCHHHHHHHHHHCCCCceecccch-------
Confidence 79999997641 3457889999999875 66777777 7889999999 99977421110
Q ss_pred HHHHHHHHHHh----HhcCCC----cccccCC-cccccc-chHHHHHHHHCCCcEEEE----------ecCCcccccccc
Q 004721 617 QTIEDIKKFAD----SVVLSK----ESVYPLN-SAFITS-ATDIVQRLQSFKLPVYVE----------TFSNEFVSQAWD 676 (733)
Q Consensus 617 ~~l~~i~~~a~----~i~~~~----~~i~~~~-~~~l~~-~~~~v~~~~~~Gl~v~~w----------Tvn~~~~~~~~~ 676 (733)
......|+. +..+.. ...+|.. ..++-. ++.+++++|+.|.+|++| |+|+++
T Consensus 215 --~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~------ 286 (309)
T cd08613 215 --KDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPE------ 286 (309)
T ss_pred --HHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHH------
Confidence 011111111 111111 0111221 123333 688999999999999999 777776
Q ss_pred cCCChHHHHHHHHhhcCcCEEEeCChHHH
Q 004721 677 FFSDPTVEINTYYEGAGIDGVITEFPMTA 705 (733)
Q Consensus 677 ~~~d~~~e~~~~l~~~GVdgIiTD~P~~~ 705 (733)
+|.+++ +.|+|||+||+|+.+
T Consensus 287 -------~~~~l~-~~~~~gi~T~r~~~l 307 (309)
T cd08613 287 -------DLKRLP-EGFTGYIWTNKIEAL 307 (309)
T ss_pred -------HHHHHH-hhCCCeEEeCCHhhc
Confidence 899997 999999999999875
No 77
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=1.4e-36 Score=315.63 Aligned_cols=244 Identities=25% Similarity=0.374 Sum_probs=161.6
Q ss_pred cCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccccccC
Q 004721 413 KNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLI 492 (733)
Q Consensus 413 HRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T 492 (733)
|||+++.+||||++||+.|++.|+++||+|||+||||+|||+||.+|+|+|+ +.+ .|.++|
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~------------------~~~-~i~~~t 61 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTG------------------GDG-PISDLT 61 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSS------------------TES-BGGGS-
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecC------------------CCc-eeccCC
Confidence 9999999999999999999999999999999999999999999999999999 555 799999
Q ss_pred HHHHhccC-ccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHH
Q 004721 493 WDEIQTLI-PQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGN 571 (733)
Q Consensus 493 ~~EL~~L~-~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~ 571 (733)
|+||++++ .+.+.. ..++...+.+.++||||+|+|+++... + ..+.+++|............+.+.++..+..
T Consensus 62 ~~el~~l~~~~~~~~----~~~~~~~~~~~~~i~tl~e~l~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (256)
T PF03009_consen 62 YAELKKLRTLGSKNS----PPFRGQRIPGKQKIPTLEEVLELCAKV-K-LNLEIKIKSKDEIKDPEFLKIVKDIVESVSD 135 (256)
T ss_dssp HHHHTTSBESSTTTT----CGGTTTTSCTCB--EBHHHHHHHHHTT-T-SEEEEEEEECTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcccccCCc----ccccccceecccccCcHHHHHHhhhhc-c-ceeEEEEeecccccchhhccccccccccccc
Confidence 99999999 432210 012223333346799999999995554 2 2577777733211100000233444444444
Q ss_pred cC------CCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccc
Q 004721 572 AG------YNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI 644 (733)
Q Consensus 572 ~~------~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l 644 (733)
.. .. .+++++||++..+..+++. |.+++++++.................+ +... .+......+.
T Consensus 136 ~~~~~~~~~~----~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~ 206 (256)
T PF03009_consen 136 ILKNSKQALS----RRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPADISLFELYKF---VKCP--GFLASVWNYA 206 (256)
T ss_dssp CHHHHHHHHC----TSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH-CCHHHHHH---HTTT--EEEEEHGGGG
T ss_pred cccccccccc----cccccccCcHHHHHHHHhcCCCceEEEEeccCccccccchhhHHHHh---hccc--cccccccccc
Confidence 43 33 6999999999999999999 999999998653211100000011111 1111 1111000111
Q ss_pred --ccchHHHHHHHHCCCcEEEEecCCc--ccccccccCCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 645 --TSATDIVQRLQSFKLPVYVETFSNE--FVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 645 --~~~~~~v~~~~~~Gl~v~~wTvn~~--~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
..++.+++.+|++|+.|++||+|++ . ++.+++ ++||||||||+|++
T Consensus 207 ~~~~~~~~v~~~~~~g~~v~~wtvn~~~~~-------------~~~~l~-~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 207 DRLGNPRLVQEAHKAGLKVYVWTVNDPDVE-------------DMKRLL-DLGVDGIITDFPDT 256 (256)
T ss_dssp HHCEBHHHHHHHHHTT-EEEEBSB-SHSHH-------------HHHHHH-HHT-SEEEES-HHH
T ss_pred cccccHHHHHHHHHCCCEEEEEecCCcHHH-------------HHHHHH-hCCCCEEEEcCCCC
Confidence 1146799999999999999999999 6 788886 99999999999985
No 78
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=1.7e-35 Score=307.51 Aligned_cols=238 Identities=24% Similarity=0.281 Sum_probs=154.1
Q ss_pred eCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCcccccc
Q 004721 97 RGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSID 176 (733)
Q Consensus 97 HRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d 176 (733)
|||+++.+||||++||+.|++.|++ +||+|||+||||++||+||.+|+|+|++.+ .|.+
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~--~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~~-------------------~i~~ 59 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGAD--GIELDVQLTKDGVPVVFHDDTLDRTTGGDG-------------------PISD 59 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSS--EEEEEEEE-TTS-EEE-SSSBSTTTSSTES-------------------BGGG
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCC--eEcccccccCCceeEeccCCeeeeecCCCc-------------------eecc
Confidence 9999999999999999999999999 999999999999999999999999999876 7999
Q ss_pred CCHHhhcccc-ccccc--cCCCCCCCCCCcccccHHHHHHhhCC--CceEeeccCchh-hhhcCCcHHHHHHHHHhhcC-
Q 004721 177 YTLNDLSNII-LNQGV--YSRTDKFDGNGFQILTVQDMARQIKP--PGLWLNIQHDAF-YAQHNLSMRSFVLSVSRSVV- 249 (733)
Q Consensus 177 ~T~~eL~~l~-~~~~~--~~~~~~~~g~~~~iptL~e~l~~~~~--~~l~iEiK~~~~-~~~~~~~~~~~v~~~l~~~~- 249 (733)
+||+||++++ ++.+. +.+...+++ .++||||+|+|+++.. ..+.+++|.... .......+...++..+....
T Consensus 60 ~t~~el~~l~~~~~~~~~~~~~~~~~~-~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (256)
T PF03009_consen 60 LTYAELKKLRTLGSKNSPPFRGQRIPG-KQKIPTLEEVLELCAKVKLNLEIKIKSKDEIKDPEFLKIVKDIVESVSDILK 138 (256)
T ss_dssp S-HHHHTTSBESSTTTTCGGTTTTSCT-CB--EBHHHHHHHHHTTTSEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHhhCcccccCCcccccccceec-ccccCcHHHHHHhhhhccceeEEEEeecccccchhhcccccccccccccccc
Confidence 9999999999 54332 223344444 4689999999999544 445555552211 11100012333333333332
Q ss_pred --------CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhH--HHhhHHHHHhhcccccCCcccccc
Q 004721 250 --------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS--LLKNLTFIKTFASGILVPKDYIWP 319 (733)
Q Consensus 250 --------~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~l~~~~~~a~~i~~~~~~i~~ 319 (733)
.++++||++..++.+++..| ..+++++...... ...+ .......+. ...+.........
T Consensus 139 ~~~~~~~~~i~~~sf~~~~l~~l~~~~~--~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 207 (256)
T PF03009_consen 139 NSKQALSRRIIISSFDPEALKQLKQRAP--RYPVGFLFEQDDE-------APADISLFELYKFVK--CPGFLASVWNYAD 207 (256)
T ss_dssp HHHHHHCTSEEEEESCHHHHHHHHHHCT--TSEEEEEESSCHH-------HHHH-CCHHHHHHHT--TTEEEEEHGGGGH
T ss_pred ccccccccccccccCcHHHHHHHHhcCC--CceEEEEeccCcc-------ccccchhhHHHHhhc--ccccccccccccc
Confidence 35899999999999999998 5677753322110 0111 000111111 1111111111100
Q ss_pred CCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCC
Q 004721 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (733)
Q Consensus 320 ~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~ 386 (733)
...++++|+.+|++|+.|++||||++ +.+++++++++| |||||||+|+
T Consensus 208 ------~~~~~~~v~~~~~~g~~v~~wtvn~~----------~~~~~~~l~~~g---vdgIiTD~P~ 255 (256)
T PF03009_consen 208 ------RLGNPRLVQEAHKAGLKVYVWTVNDP----------DVEDMKRLLDLG---VDGIITDFPD 255 (256)
T ss_dssp ------HCEBHHHHHHHHHTT-EEEEBSB-SH----------SHHHHHHHHHHT----SEEEES-HH
T ss_pred ------ccccHHHHHHHHHCCCEEEEEecCCc----------HHHHHHHHHhCC---CCEEEEcCCC
Confidence 01136799999999999999999863 137899999999 9999999996
No 79
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=100.00 E-value=4e-33 Score=277.12 Aligned_cols=188 Identities=27% Similarity=0.380 Sum_probs=153.9
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||+.|++.|+++||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd--------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence 68999999999999999999999999999999999999999999998
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
+|||+|+|+.+++. ..++||+|.+.. ...+++.+++++
T Consensus 48 ----------------------------------i~tL~e~l~~~~~~---~~i~leiK~~~~-----~~~~~~~l~~~i 85 (189)
T cd08556 48 ----------------------------------IPTLEEVLELVKGG---VGLNIELKEPTR-----YPGLEAKVAELL 85 (189)
T ss_pred ----------------------------------CCCHHHHHHhcccC---cEEEEEECCCCC-----chhHHHHHHHHH
Confidence 48999999999974 489999998642 135788999999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+++++. ++++++||++..+.++++. |++++++++........ .. ..+...++ ..+.+. +....+
T Consensus 86 ~~~~~~----~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~----~~--~~~~~~~~--~~v~~~---~~~~~~ 150 (189)
T cd08556 86 REYGLE----ERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPL----LA--ELARALGA--DAVNPH---YKLLTP 150 (189)
T ss_pred HHcCCc----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccch----hh--hHHHhcCC--eEEccC---hhhCCH
Confidence 999977 7999999999999999999 99999999875322110 00 01111111 122221 223468
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
.+++.+|++|++|++||+|+.+ ++..++ ++|||||+||+
T Consensus 151 ~~i~~~~~~g~~v~~wtvn~~~-------------~~~~~~-~~GVdgI~TD~ 189 (189)
T cd08556 151 ELVRAAHAAGLKVYVWTVNDPE-------------DARRLL-ALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHcCCEEEEEcCCCHH-------------HHHHHH-HCCCCEEecCC
Confidence 9999999999999999999886 788886 99999999996
No 80
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=99.98 E-value=1.1e-31 Score=266.79 Aligned_cols=185 Identities=21% Similarity=0.173 Sum_probs=147.6
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|+| +||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~--~iE~Dv~~tkDg~~vv~Hd------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGAD--GVELDVQLTKDGVLVVIHD------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCC--EEEEEeeEcCCCCEEEEcC-------------------------------
Confidence 5899999999999999999999999999 9999999999999999999
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC--
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV-- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~-- 250 (733)
+|||+|+|+.++ +..+++|+|.+.. ...+.+.+++++++++.
T Consensus 48 -------------------------------i~tL~e~l~~~~~~~~i~leiK~~~~----~~~~~~~l~~~i~~~~~~~ 92 (189)
T cd08556 48 -------------------------------IPTLEEVLELVKGGVGLNIELKEPTR----YPGLEAKVAELLREYGLEE 92 (189)
T ss_pred -------------------------------CCCHHHHHHhcccCcEEEEEECCCCC----chhHHHHHHHHHHHcCCcC
Confidence 269999999998 4789999997543 22578889999999864
Q ss_pred -ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCCC
Q 004721 251 -NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPH 329 (733)
Q Consensus 251 -~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~ 329 (733)
++++||++..++++++..| +.+++++...... . .... .......+.++++++.. ..
T Consensus 93 ~v~i~s~~~~~l~~~~~~~p--~~~~~~~~~~~~~-~------~~~~---~~~~~~~~~~v~~~~~~-----------~~ 149 (189)
T cd08556 93 RVVVSSFDHEALRALKELDP--EVPTGLLVDKPPL-D------PLLA---ELARALGADAVNPHYKL-----------LT 149 (189)
T ss_pred CEEEEeCCHHHHHHHHHhCC--CCcEEEEeecCcc-c------chhh---hHHHhcCCeEEccChhh-----------CC
Confidence 5999999999999999998 6777763322111 0 0000 00111124445554332 24
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~ 384 (733)
+.+++.+|++|++|++||+|+. +++++++++| ||||+||+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~~------------~~~~~~~~~G---VdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVNDP------------EDARRLLALG---VDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCCH------------HHHHHHHHCC---CCEEecCC
Confidence 7899999999999999999864 8999999999 99999996
No 81
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.97 E-value=1.6e-31 Score=263.30 Aligned_cols=170 Identities=20% Similarity=0.191 Sum_probs=137.4
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
||||||+++.+||||++||+.|++.|+++||+|||+|+||++||+||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~------------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA------------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence 5899999999999999999999999999999999999999999999999988542
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhc-----CCCceEEEEecchhHHHhhcCCcHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNA-----NSLSGVLISIENAVYLAEKQGMSVTNS 564 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~-----~~~~~l~iEiK~~~~~~~~~~~~~~~~ 564 (733)
++++|||+|+|++++++ .. +.++||+|.+... ...+.++
T Consensus 56 -------------------------------~~~~ptl~evl~~~~~~~~~~~~~-~~l~iEiK~~~~~----~~~~~~~ 99 (179)
T cd08555 56 -------------------------------GILPPTLEEVLELIADYLKNPDYT-IILSLEIKQDSPE----YDEFLAK 99 (179)
T ss_pred -------------------------------CCCCCCHHHHHHHHHhhhhcCCCc-eEEEEEeCCCCCc----chHHHHH
Confidence 26799999999999873 12 3799999976421 2357788
Q ss_pred HHHHHHHcC---CCCCCCceEEEEeCCHHHHHHHHhccCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCc
Q 004721 565 VMEALGNAG---YNKQTALKVMIQSTDSSVLMKLREKTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNS 641 (733)
Q Consensus 565 v~~~l~~~~---~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~ 641 (733)
+++.+++++ +. ++|+++||. .. . +....+..
T Consensus 100 ~~~~~~~~~~~~~~----~~v~i~sf~--------~~---------~----------------------~~~~~~~~--- 133 (179)
T cd08555 100 VLKELRVYFDYDLR----GKVVLSSFN--------AL---------G----------------------VDYYNFSS--- 133 (179)
T ss_pred HHHHHHHcCCcccC----CCEEEEeec--------cc---------C----------------------CChhcccc---
Confidence 999999998 65 799999990 00 0 00000000
Q ss_pred cccccchHHHHHHHHCCCcEEEEecCC-cccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 642 AFITSATDIVQRLQSFKLPVYVETFSN-EFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 642 ~~l~~~~~~v~~~~~~Gl~v~~wTvn~-~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
....++++++.+|++|++|++||+|+ +. ++.+++ ++|||||+||+
T Consensus 134 -~~~~~~~~v~~~~~~g~~v~~wtvn~~~~-------------~~~~l~-~~Gvd~i~TD~ 179 (179)
T cd08555 134 -KLIKDTELIASANKLGLLSRIWTVNDNNE-------------IINKFL-NLGVDGLITDF 179 (179)
T ss_pred -hhhcCHHHHHHHHHCCCEEEEEeeCChHH-------------HHHHHH-HcCCCEEeCCC
Confidence 11236899999999999999999998 76 788886 99999999996
No 82
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.97 E-value=9.6e-31 Score=257.79 Aligned_cols=165 Identities=25% Similarity=0.230 Sum_probs=131.8
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
||||||+++.+||||++||+.|++.|++ +||+|||+|+||++||+||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~--~iE~DV~lt~Dg~lvv~HD~~~~r~~~----------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGAR--GLELDVRLTKDGELVVYHGPTLDRTTA----------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCC--EEEEEEeEcCCCeEEEECCCccccccC-----------------------
Confidence 5899999999999999999999999999 999999999999999999999999861
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCC--------CceEeeccCchhhhhcCCcHHHHHHHHH
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKP--------PGLWLNIQHDAFYAQHNLSMRSFVLSVS 245 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~--------~~l~iEiK~~~~~~~~~~~~~~~v~~~l 245 (733)
++++|||+|+|+++++ +.++||+|.+.. ....+++.+++.+
T Consensus 56 ----------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~---~~~~~~~~~~~~~ 104 (179)
T cd08555 56 ----------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP---EYDEFLAKVLKEL 104 (179)
T ss_pred ----------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC---cchHHHHHHHHHH
Confidence 2589999999999864 579999996542 1225778889999
Q ss_pred hhcC---C---ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCcccccc
Q 004721 246 RSVV---V---NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWP 319 (733)
Q Consensus 246 ~~~~---~---~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~ 319 (733)
++++ . ++++||. ...+ .+ . . +.. .
T Consensus 105 ~~~~~~~~~~~v~i~sf~--------~~~~------~~--~-------------------------~---~~~-~----- 134 (179)
T cd08555 105 RVYFDYDLRGKVVLSSFN--------ALGV------DY--Y-------------------------N---FSS-K----- 134 (179)
T ss_pred HHcCCcccCCCEEEEeec--------ccCC------Ch--h-------------------------c---ccc-h-----
Confidence 9886 3 4899990 0000 00 0 0 000 0
Q ss_pred CCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC
Q 004721 320 VDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (733)
Q Consensus 320 ~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~ 384 (733)
...++++|+++|++|++|++||||+. .++|++++++| ||||+||+
T Consensus 135 ------~~~~~~~v~~~~~~g~~v~~wtvn~~-----------~~~~~~l~~~G---vd~i~TD~ 179 (179)
T cd08555 135 ------LIKDTELIASANKLGLLSRIWTVNDN-----------NEIINKFLNLG---VDGLITDF 179 (179)
T ss_pred ------hhcCHHHHHHHHHCCCEEEEEeeCCh-----------HHHHHHHHHcC---CCEEeCCC
Confidence 01247899999999999999999861 38999999999 99999996
No 83
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.94 E-value=5.1e-28 Score=259.26 Aligned_cols=332 Identities=38% Similarity=0.546 Sum_probs=252.7
Q ss_pred HHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhccccCCCCCcCCcceEEecC
Q 004721 335 DAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKN 414 (733)
Q Consensus 335 ~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~~~~~~~~~~~~~~iIaHR 414 (733)
.+|..|+++++|.+.+.-.+++.+..+...++..++..+...++++..|+|-.....+.++.+.+ ...||+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~r 75 (341)
T KOG2258|consen 3 DAHIAGLEVFASGFANDFSLAFNYSYALILVTLAFLLNVLFSLLFLFSDPPPTASAHKNLFLHIG-------GWLIIAHR 75 (341)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhhhhHhhhcCCccchhhhHHHhcCCC-------CceeEecc
Confidence 45666777777766655455566665655666666777777799999999999888888887643 57899999
Q ss_pred CCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccccccCHH
Q 004721 415 GASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWD 494 (733)
Q Consensus 415 G~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~ 494 (733)
|+++.+||||++||++|++.|+|.||+||++|+||++|++||.+..|++++.. .+.++||.
T Consensus 76 ga~g~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~-------------------~~~~lt~~ 136 (341)
T KOG2258|consen 76 GASGDAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVPE-------------------IVFDLTWM 136 (341)
T ss_pred CCCCCCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeeccee-------------------eeccCCHH
Confidence 99999999999999999999999999999999999999999999999999543 48999999
Q ss_pred HHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCC
Q 004721 495 EIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGY 574 (733)
Q Consensus 495 EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~ 574 (733)
|++++......++ ..+.+. .+++|+|+|....+-++ +. .+.-|.| + .+.+++++.+++.+.
T Consensus 137 e~~~l~~~~~~~~------~~~~~~-~~~~~~l~e~v~~~~~~-n~-~~l~d~~---~-------~~~~~vl~~l~~~~~ 197 (341)
T KOG2258|consen 137 ELRKLGPKIENPF------AGPIIT-LEKLLTLAEAVASVVGN-NV-AMLNDVK---L-------LVVDKVLEALKNATS 197 (341)
T ss_pred HHhccCccccCcc------cccccc-hhhhccHHHHHHHHHcC-Ch-hhhhhhh---h-------hhHHHHHHHHHHHhc
Confidence 9999998765442 112222 37899999999998886 32 4555555 1 356778888888766
Q ss_pred CCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCcccc-ccchHHHH
Q 004721 575 NKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFI-TSATDIVQ 652 (733)
Q Consensus 575 ~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l-~~~~~~v~ 652 (733)
..+..+++++|||++.++.++++. |.+.++......+ ....+.+++++..+.+++..+.+...... ...++++.
T Consensus 198 ~~~~~~kv~v~s~~~~~l~~~~~~~~~~~i~~~~~~~~----ls~~~dik~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 273 (341)
T KOG2258|consen 198 DFSLYDKVLVQSFNPIVLYRLKKLDPFILIGDTWRFTF----LSGIEDIKKRAFAVVSSKLAIFPVSDSLVLAITKNVVA 273 (341)
T ss_pred CCCccceEEEEecCcHHHHHhccCCceEEecceecchh----hccchhhhcccceeeechHHHHHHHHHHhhhhhcceee
Confidence 654447999999999999999998 7755554443321 11133555666666665555554422222 22346888
Q ss_pred HHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhhcccc
Q 004721 653 RLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKLVRKQ 716 (733)
Q Consensus 653 ~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~~~~~ 716 (733)
..++.++.|+++..+++ .-++.+|..++.-++..+..+.|++|..||++-.+..+.+..+...
T Consensus 274 ~~~~~~~~v~~~~~~~e-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (341)
T KOG2258|consen 274 PLQKLNLVVYVEVFNNE-VVLAVDFSAAPTIELAGWITNVGIDGYITDFHLTAPRLTDNPCEGL 336 (341)
T ss_pred ehhcCCcEEEEEEeecc-ceeeccccccCceEeeeeeccccccCceeeccchhhHhhccccccc
Confidence 89999999999999999 6788899998887777777889999999999999988887765443
No 84
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.94 E-value=1.4e-25 Score=235.32 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=171.6
Q ss_pred hHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccccccCHHHHhccCccc
Q 004721 424 TNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTLIPQI 503 (733)
Q Consensus 424 Tl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~EL~~L~~~~ 503 (733)
+..+|..|.++|+|+||+|||+||||+|||+||.++.++ | +.+ .|.++||+||+.++.+.
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~------------------~~~-~V~dlTleqL~~l~~~~ 76 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-G------------------IKL-LVSDLTAEQLESILDYS 76 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-C------------------CcE-EeecCcHHHHhccCCcc
Confidence 466899999999999999999999999999999999774 5 444 79999999999999865
Q ss_pred cCCC-ccccc-cCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhc----------CCcHHHHHHHHHHH
Q 004721 504 SNPY-FKFKL-FRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQ----------GMSVTNSVMEALGN 571 (733)
Q Consensus 504 ~~~~-~~~~~-~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~----------~~~~~~~v~~~l~~ 571 (733)
+... ..... ..-..+. ++++|||+|+|+.++.. ++++||||.|....... -..+++.+++.+-+
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~pTL~evL~~lp~~---iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~ 152 (300)
T cd08578 77 LDDLNSEISDMVDLKRLL-SSRVVSLETLLELLPPS---IQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFD 152 (300)
T ss_pred cccccccccccchhhhhc-CCcCCCHHHHHHhhccC---CeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 4211 00000 0001233 47899999999999775 59999999877542111 12478888888876
Q ss_pred cCCCC----CCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecc--------------------------cchhhhHHHH
Q 004721 572 AGYNK----QTALKVMIQSTDSSVLMKLREK-TSYELVYKVKEN--------------------------IRDALNQTIE 620 (733)
Q Consensus 572 ~~~~~----~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~--------------------------~~~~~~~~l~ 620 (733)
+.... ...++|+|+||||+++..++.+ |++|+.|++... +.|....+++
T Consensus 153 har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~ 232 (300)
T cd08578 153 HARYLRHTPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIK 232 (300)
T ss_pred HhhhhcccCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhHH
Confidence 64210 0126999999999999999999 999999998764 2233445677
Q ss_pred HHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 621 DIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 621 ~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
++..||...+. ..+.... ..+...|.+|+.++++|+.+++|+-+.+. ........||||++.|
T Consensus 233 ~Av~fA~~~nL--~Giv~~~-~~L~~~P~lV~~ik~~GL~lv~~g~~~~~--------------~~~~~~~~~vnG~~~~ 295 (300)
T cd08578 233 EAVRFAKNNNL--LGLILPY-SLLNIVPQLVESIKSRGLLLIASGEPESL--------------IEVAEAGDGINGVVTE 295 (300)
T ss_pred HHHHHHHHcCC--cEEEecH-HHHhhChHHHHHHHHcCCEEEEECCCCcc--------------ccccccccCCceEEeC
Confidence 77788776544 1222221 33456799999999999999999976432 1112248899999988
Q ss_pred C
Q 004721 701 F 701 (733)
Q Consensus 701 ~ 701 (733)
.
T Consensus 296 ~ 296 (300)
T cd08578 296 D 296 (300)
T ss_pred C
Confidence 5
No 85
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.90 E-value=3e-23 Score=217.71 Aligned_cols=227 Identities=13% Similarity=0.089 Sum_probs=158.0
Q ss_pred HHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccccccCCHHhhccccc
Q 004721 108 SSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIIL 187 (733)
Q Consensus 108 Tl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~T~~eL~~l~~ 187 (733)
+..+|..|.++|+| +||+|||+||||+|||+||.+++|+ ++.+ +|.++||+||++++.
T Consensus 17 ~~~sfvtAsslgad--~VE~DVqLTkDgvpVV~HD~~i~~t-~~~~-------------------~V~dlTleqL~~l~~ 74 (300)
T cd08578 17 DGNSFVTASSLSGE--YLRVKVCVLKDGTPVVAPEWFVPVG-GIKL-------------------LVSDLTAEQLESILD 74 (300)
T ss_pred CchhHHHHHHcCCC--EEEEEEEECcCCEEEEECCCceEec-CCcE-------------------EeecCcHHHHhccCC
Confidence 46799999999999 9999999999999999999999775 5543 799999999999998
Q ss_pred cccccCCC--------CCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcC-----------CcHHHHHHHHHhh
Q 004721 188 NQGVYSRT--------DKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHN-----------LSMRSFVLSVSRS 247 (733)
Q Consensus 188 ~~~~~~~~--------~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~-----------~~~~~~v~~~l~~ 247 (733)
+.++.... ..+. ++++|||+|+|+.+. .++++||||.|...+... -.+++.+++.+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~--~~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~ 152 (300)
T cd08578 75 YSLDDLNSEISDMVDLKRLL--SSRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFD 152 (300)
T ss_pred cccccccccccccchhhhhc--CCcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHH
Confidence 77643210 0123 379999999999985 489999999887653211 1245666666655
Q ss_pred cC-----------CceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccC----------------CCCCcchhHHHh-h
Q 004721 248 VV-----------VNYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIE----------------PTTNQTYGSLLK-N 299 (733)
Q Consensus 248 ~~-----------~~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~-~ 299 (733)
+. .++++||++++|..++.+.| ..|+.++..+..... ......|.+... .
T Consensus 153 har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp--~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~S 230 (300)
T cd08578 153 HARYLRHTPGSTRSIVFSSCNPEVCTILNWKQP--NFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRS 230 (300)
T ss_pred HhhhhcccCCCCCceEEeeCCHHHHHHHHhcCC--CCCEEEEecCCccccccccccccccccccccccccccccCchhhh
Confidence 42 25999999999999999998 788887443321100 000113444443 4
Q ss_pred HHHHHhhccc-----ccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCC
Q 004721 300 LTFIKTFASG-----ILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGD 374 (733)
Q Consensus 300 l~~~~~~a~~-----i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~ 374 (733)
+++...+|.. +..+... +...|.+|+.++++||.+.+|+-..+ +.-....+.|
T Consensus 231 i~~Av~fA~~~nL~Giv~~~~~---------L~~~P~lV~~ik~~GL~lv~~g~~~~------------~~~~~~~~~~- 288 (300)
T cd08578 231 IKEAVRFAKNNNLLGLILPYSL---------LNIVPQLVESIKSRGLLLIASGEPES------------LIEVAEAGDG- 288 (300)
T ss_pred HHHHHHHHHHcCCcEEEecHHH---------HhhChHHHHHHHHcCCEEEEECCCCc------------cccccccccC-
Confidence 5555555433 2222222 33458999999999999999995421 0111234557
Q ss_pred cccceEEecC
Q 004721 375 FSVDGVLSDF 384 (733)
Q Consensus 375 ~~VDgIiTD~ 384 (733)
|||++.|.
T Consensus 289 --vnG~~~~~ 296 (300)
T cd08578 289 --INGVVTED 296 (300)
T ss_pred --CceEEeCC
Confidence 99999885
No 86
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.87 E-value=2.2e-21 Score=188.06 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=129.3
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSF 489 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~ 489 (733)
|||||| ||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~----------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK----------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence 589999 999999999998 9999999999 9999999997653
Q ss_pred ccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHH
Q 004721 490 SLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEAL 569 (733)
Q Consensus 490 d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l 569 (733)
++|||+|+|+.++.. .++||||.+ .+++++++++
T Consensus 42 ---------------------------------~~PtLeEvL~~~~~~----~l~inIK~~---------~l~~~l~~li 75 (192)
T cd08584 42 ---------------------------------NGELLEDWLKEYNHG----TLILNIKAE---------GLELRLKKLL 75 (192)
T ss_pred ---------------------------------CCCCHHHHHHhcccc----cEEEEECch---------hHHHHHHHHH
Confidence 259999999999765 689999954 3678899999
Q ss_pred HHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccch
Q 004721 570 GNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSAT 648 (733)
Q Consensus 570 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~ 648 (733)
+++++. ++++++||++.++.+++.- +.+-+.+.-.+. .+..+..+ ..+ ..+|...-...-.+.
T Consensus 76 ~~~~~~----~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E~----~~~~~~~~-~~~-------~~VW~D~f~~~~~~~ 139 (192)
T cd08584 76 AEYGIT----NYFFLDMSVPDIIKYLENGEKRTATRVSEYEP----IPTALSLY-EKA-------DWVWIDSFTSLWLDN 139 (192)
T ss_pred HhcCCc----ceEEEEcCCHHHHHHHhcCCCeeEEeeccccc----chHHHHhh-ccc-------cEEEEecccccCCCH
Confidence 999998 8999999999999999876 545444332211 11111111 111 223322101112368
Q ss_pred HHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHH--H--hhcCcCEEEeCChHH
Q 004721 649 DIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTY--Y--EGAGIDGVITEFPMT 704 (733)
Q Consensus 649 ~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~--l--~~~GVdgIiTD~P~~ 704 (733)
+.++...++|+++..=. ++ .+.-|.-.++..+ + .+..-++||||+|..
T Consensus 140 ~~~~~~~~~~~~~c~VS---pE-----Lh~~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 140 DLILKLLKAGKKICLVS---PE-----LHGRDHLAEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred HHHHHHHHCCcEEEEEC---HH-----HcCCChHHHHHHHHhhhhccccCeeEeccCccc
Confidence 89999999999987542 22 1222222233321 1 123368999999974
No 87
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.85 E-value=1.7e-20 Score=181.98 Aligned_cols=187 Identities=13% Similarity=0.074 Sum_probs=125.8
Q ss_pred EEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccc
Q 004721 94 VVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWF 173 (733)
Q Consensus 94 viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~ 173 (733)
|||||| ||++||++|+++ | +||+|||+| ||++||+||++++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--d--gvE~DVr~t-Dg~lVV~HD~~l~--------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--F--GVETDIRDY-GGQLVISHDPFVK--------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--C--EEEEEEEee-CCeEEEECCCCCC---------------------------
Confidence 579999 999999999999 8 999999999 9999999999873
Q ss_pred cccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC---
Q 004721 174 SIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV--- 250 (733)
Q Consensus 174 v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~--- 250 (733)
++|||+|+|+++++..++||||.+ ++++.+++++++++.
T Consensus 42 ------------------------------~~PtLeEvL~~~~~~~l~inIK~~--------~l~~~l~~li~~~~~~~~ 83 (192)
T cd08584 42 ------------------------------NGELLEDWLKEYNHGTLILNIKAE--------GLELRLKKLLAEYGITNY 83 (192)
T ss_pred ------------------------------CCCCHHHHHHhcccccEEEEECch--------hHHHHHHHHHHhcCCcce
Confidence 458999999999887899999954 378899999999987
Q ss_pred ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCCCh
Q 004721 251 NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHT 330 (733)
Q Consensus 251 ~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~ 330 (733)
++++||++..+++++.-.+ ++.. ..+..+.. . ..-.+...+.++-.+. .. ..-.+.
T Consensus 84 vi~ssf~~~~l~~~~~~~~----~i~t---r~Se~E~~-----~----~~~~~~~~~~~VW~D~--f~------~~~~~~ 139 (192)
T cd08584 84 FFLDMSVPDIIKYLENGEK----RTAT---RVSEYEPI-----P----TALSLYEKADWVWIDS--FT------SLWLDN 139 (192)
T ss_pred EEEEcCCHHHHHHHhcCCC----eeEE---eecccccc-----h----HHHHhhccccEEEEec--cc------ccCCCH
Confidence 4899999999999977542 1211 11111110 0 0001112344432221 10 112257
Q ss_pred HHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHH--hcCCcccceEEecCCCCc
Q 004721 331 TIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI--DNGDFSVDGVLSDFPLTP 388 (733)
Q Consensus 331 ~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~--~~G~~~VDgIiTD~P~~~ 388 (733)
+.++...++|.++..=. .| ... -|-.++++.+. +...-.-+.|.||+|+.+
T Consensus 140 ~~~~~~~~~~~~~c~VS--pE-Lh~----~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~~ 192 (192)
T cd08584 140 DLILKLLKAGKKICLVS--PE-LHG----RDHLAEWEAKQYIEFLKENFDALCTKVPDLW 192 (192)
T ss_pred HHHHHHHHCCcEEEEEC--HH-HcC----CChHHHHHHHHhhhhccccCeeEeccCcccC
Confidence 89999999999986543 22 111 12224444322 211111589999999863
No 88
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.85 E-value=5e-21 Score=205.44 Aligned_cols=251 Identities=21% Similarity=0.248 Sum_probs=172.3
Q ss_pred CCEEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCC
Q 004721 91 PPFVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTP 170 (733)
Q Consensus 91 ~~~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~ 170 (733)
...|++|||+++.+||||++||++|++.|+| .||+||++|+||++|++||.+.+|++++..
T Consensus 68 ~~~i~~~rga~g~~penT~~A~~~a~~~Gad--~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~----------------- 128 (341)
T KOG2258|consen 68 GWLIIAHRGASGDAPENTLAAYKKAIADGAD--LIELDVQMTSDGVPVILHDSTTVRVTGVPE----------------- 128 (341)
T ss_pred CceeEeccCCCCCCCcccHHHHHHHHHcCCc--EEEeccccCCCCceEEeecCcceeeeccee-----------------
Confidence 6889999999999999999999999999999 999999999999999999999999998875
Q ss_pred ccccccCCHHhhccccccccccCCCCCCCCCCcccccHHHHHHhhCCC--ceEeeccCchhhhhcCCcHHHHHHHHHhhc
Q 004721 171 GWFSIDYTLNDLSNIILNQGVYSRTDKFDGNGFQILTVQDMARQIKPP--GLWLNIQHDAFYAQHNLSMRSFVLSVSRSV 248 (733)
Q Consensus 171 g~~v~d~T~~eL~~l~~~~~~~~~~~~~~g~~~~iptL~e~l~~~~~~--~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~ 248 (733)
.+.++||.|++++..........+.+. .+++|+|+|....+-.. .+.-|.| ..+.+.+++.+++.
T Consensus 129 --~~~~lt~~e~~~l~~~~~~~~~~~~~~--~~~~~~l~e~v~~~~~~n~~~l~d~~---------~~~~~~vl~~l~~~ 195 (341)
T KOG2258|consen 129 --IVFDLTWMELRKLGPKIENPFAGPIIT--LEKLLTLAEAVASVVGNNVAMLNDVK---------LLVVDKVLEALKNA 195 (341)
T ss_pred --eeccCCHHHHhccCccccCcccccccc--hhhhccHHHHHHHHHcCChhhhhhhh---------hhhHHHHHHHHHHH
Confidence 589999999999987765432111111 36899999999987542 2333444 13566677777765
Q ss_pred CC-------ceeccCCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCC
Q 004721 249 VV-------NYISSPEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVD 321 (733)
Q Consensus 249 ~~-------~~i~SF~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~ 321 (733)
+. +++|||++.++.++++..| ...+.. .+... ..+..+.++.++.++.++...+.+..
T Consensus 196 ~~~~~~~~kv~v~s~~~~~l~~~~~~~~--~~~i~~-~~~~~------------~ls~~~dik~~~~~~~~~~~~~~~~~ 260 (341)
T KOG2258|consen 196 TSDFSLYDKVLVQSFNPIVLYRLKKLDP--FILIGD-TWRFT------------FLSGIEDIKKRAFAVVSSKLAIFPVS 260 (341)
T ss_pred hcCCCccceEEEEecCcHHHHHhccCCc--eEEecc-eecch------------hhccchhhhcccceeeechHHHHHHH
Confidence 43 4899999999999999876 322221 11100 11122344445555555554443321
Q ss_pred CccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHh-cCCcccceEEecCCCCcccc
Q 004721 322 ESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFID-NGDFSVDGVLSDFPLTPSAA 391 (733)
Q Consensus 322 ~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~-~G~~~VDgIiTD~P~~~~~~ 391 (733)
..-.......++...++.++.|+++..+++.....++..+..-++..+.. .| ++|.+||++-.+..+
T Consensus 261 ~~~~~~~~~~v~~~~~~~~~~v~~~~~~~e~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l 328 (341)
T KOG2258|consen 261 DSLVLAITKNVVAPLQKLNLVVYVEVFNNEVVLAVDFSAAPTIELAGWITNVG---IDGYITDFHLTAPRL 328 (341)
T ss_pred HHHhhhhhcceeeehhcCCcEEEEEEeeccceeeccccccCceEeeeeecccc---ccCceeeccchhhHh
Confidence 11111222368889999999999999998855566655454333333333 34 666666666654443
No 89
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.35 E-value=7.7e-12 Score=127.10 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=121.6
Q ss_pred EecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccccCCCcCCCcccccccccccCcccccc
Q 004721 411 ISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFS 490 (733)
Q Consensus 411 IaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d 490 (733)
-+|-=+....| |..|++.||++||.||+++ ||+++|.||.++.+.-. .+.+
T Consensus 4 hsHNDY~r~~P------l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~~~----------------------tl~~ 54 (228)
T cd08577 4 HSHNDYWRKRP------LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSPAR----------------------TLES 54 (228)
T ss_pred ccccccccccc------hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCccC----------------------CHHH
Confidence 34555555555 7889999999999999999 99999999999877522 5789
Q ss_pred cCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHH
Q 004721 491 LIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALG 570 (733)
Q Consensus 491 ~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~ 570 (733)
+++++|.++..... + ... ........++||||...... ..++.++++.++
T Consensus 55 Lyl~pL~~~l~~~n-~----------------~~~---------~~~~~~l~LlIDiKt~g~~t----~~~l~~~L~~~~ 104 (228)
T cd08577 55 LYLDPLLEILDQNN-G----------------QAY---------NDPEQPLQLLIDIKTDGEST----YPALEEVLKPYI 104 (228)
T ss_pred HhHHHHHHHHHHcC-C----------------CCC---------CCCCCceEEEEEECCCChHH----HHHHHHHHHHHH
Confidence 99999987543321 1 111 11111247999999765321 245667777787
Q ss_pred HcCCCCC------CCceEEEEeCCHHHHHHHHhccCceEEEEeecccc-hhhhHHHHHHH-----HHHhHhcCCCccccc
Q 004721 571 NAGYNKQ------TALKVMIQSTDSSVLMKLREKTSYELVYKVKENIR-DALNQTIEDIK-----KFADSVVLSKESVYP 638 (733)
Q Consensus 571 ~~~~~~~------~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~-~~~~~~l~~i~-----~~a~~i~~~~~~i~~ 638 (733)
+.++... ..=.|+++.-.|..+.. .. ..+..| ++.... +........+. .|...++.+.....+
T Consensus 105 ~~~~~~~~~~~~~~pvtvV~tGn~p~~~~~--~~-~~r~~f-~D~~l~~~~~~~~~~~~~~~~S~~~~~~~~~~~~g~~~ 180 (228)
T cd08577 105 DIGYLSYYDKLVPGPVTVVITGNRPKEEVK--SQ-YPRYIF-FDGRLDEDLPDEQLARLSPMISASFAKFSKWNGKGDTP 180 (228)
T ss_pred hcCceeecCcEEecCeEEEEeCCCChhhhc--cc-cCCeEE-EeCChhhccccccccccceEEEccHHHhcCCCCCCCCC
Confidence 7776632 11123444443433211 11 112222 222111 11000000010 111111111111111
Q ss_pred CCccccccchHHHHHHHHCCCcEEEEecCC-cccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 639 LNSAFITSATDIVQRLQSFKLPVYVETFSN-EFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 639 ~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~-~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
. ..+..-.++++.+|++|+++.+||+++ .. .+..++ ++|||+|+||+
T Consensus 181 ~--~q~~~l~~~v~~a~~~Gl~vr~Wtv~~~~~-------------~~~~l~-~~GVd~I~TDd 228 (228)
T cd08577 181 E--DEKEKLKSIIDKAHARGKKVRFWGTPDRPN-------------VWKTLM-ELGVDLLNTDD 228 (228)
T ss_pred H--HHHHHHHHHHHHHHHCCCEEEEEccCChHH-------------HHHHHH-HhCCCEEecCC
Confidence 0 112223678999999999999999975 43 677776 99999999995
No 90
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=99.32 E-value=3.3e-11 Score=123.23 Aligned_cols=216 Identities=15% Similarity=0.186 Sum_probs=129.9
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeE-EEeeccccccccccCCCcCCCcccccccccccCcccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP-FCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFS 488 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~-Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i 488 (733)
+|||| =||++....++..||..||+||...++|.+ ..+||.-.+- . .+ .
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc-~--------------------r~-c- 51 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDC-F--------------------RG-C- 51 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCcccc-c--------------------cC-C-
Confidence 57777 499999999999999999999999999987 5666642211 0 00 0
Q ss_pred cccCHHHHhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcC------CCceEEEEecchhHHHhh---cCC
Q 004721 489 FSLIWDEIQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNAN------SLSGVLISIENAVYLAEK---QGM 559 (733)
Q Consensus 489 ~d~T~~EL~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~------~~~~l~iEiK~~~~~~~~---~~~ 559 (733)
.+---|.++|+..++.. +.+-+.+++|.+....+. .+.
T Consensus 52 ---------------------------------~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDlK~~~~~~~~~~~ag~ 98 (265)
T cd08576 52 ---------------------------------TAREMFDEILDYRRNGTTPGFRENLIFVWLDLKNPDLCGECSINAGR 98 (265)
T ss_pred ---------------------------------cHHHHHHHHHHHHHhcCCCCccceeEEEEEEcCCCCcCHHHHHHHHH
Confidence 01111344444444331 234689999977654321 122
Q ss_pred cHHHHHHHHHHHcCCCCCCCceE--EEEeC---CHHHHHHHHhc-c--Cce------EEEEeecccchhhhHHHHHHHHH
Q 004721 560 SVTNSVMEALGNAGYNKQTALKV--MIQST---DSSVLMKLREK-T--SYE------LVYKVKENIRDALNQTIEDIKKF 625 (733)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~v--ii~Sf---d~~~L~~lk~~-p--~~~------~~~l~~~~~~~~~~~~l~~i~~~ 625 (733)
++++++ |+.|+-.. ...|+ +++.. +...++.+++. . +.. +++-+.. ...+..+++.
T Consensus 99 ~la~~l---l~~~w~~~-~~~ra~~~~s~~~~~~~~~~~~~~~~l~~~~~~~~~~~kvg~df~~------n~~l~~~~~~ 168 (265)
T cd08576 99 DLARKL---LEPYWNGG-SGARALYGFSIPSITDSRFFKGIRDRLNSEEAVSGLLDKVGKDFSG------NEDLEDIRRV 168 (265)
T ss_pred HHHHHH---HHHhhcCC-CCeEEEEEEEeccccchHHHHHHHHHHHhcCchhhHHHhhcccccC------CCChHHHHHH
Confidence 333333 44443211 01243 34433 34567777654 2 221 2222221 1124555554
Q ss_pred HhHhcCCCcccccCC---ccc--cccchHHHHHHHHCCC-----cEEEEecCCcccccccccCCChHHHHHHHHhhcCcC
Q 004721 626 ADSVVLSKESVYPLN---SAF--ITSATDIVQRLQSFKL-----PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGID 695 (733)
Q Consensus 626 a~~i~~~~~~i~~~~---~~~--l~~~~~~v~~~~~~Gl-----~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVd 695 (733)
.+..+ ..+++... .-. ...++++++.+|++|. +|++||||++. ++.+++ ++|||
T Consensus 169 ~~~~~--~~h~w~~dGitnC~~~~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~~-------------~~~~ll-~~GVD 232 (265)
T cd08576 169 YDYGG--DGHIWQSDGITNCLEKYRTCARLREAIKKRDTPGYLGKVYGWTSDKGS-------------SVRKLL-RLGVD 232 (265)
T ss_pred HHhcC--cCceecCCCcccccccccccHHHHHHHHHcCCCCcCCeEEEEeCCCHH-------------HHHHHH-hcCCC
Confidence 44443 12333221 001 1456889999999999 99999999987 788887 99999
Q ss_pred EEEeCChHHHHHHHHhhcc
Q 004721 696 GVITEFPMTAARYRSKLVR 714 (733)
Q Consensus 696 gIiTD~P~~~~~~l~~~~~ 714 (733)
|||||+|+.+.+++++..-
T Consensus 233 GIITD~P~~i~~~l~~~~~ 251 (265)
T cd08576 233 GIITNYPKRIIDVLKESEF 251 (265)
T ss_pred EEEECCHHHHHHHHHhccc
Confidence 9999999999999887654
No 91
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.29 E-value=1.1e-11 Score=126.11 Aligned_cols=93 Identities=17% Similarity=0.061 Sum_probs=65.0
Q ss_pred HHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCccccCccccccccccccccCCCCCCccccccCCHHhhccccccccc
Q 004721 112 YSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNASNIAQIFKTQQKNYLVNGVPTPGWFSIDYTLNDLSNIILNQGV 191 (733)
Q Consensus 112 f~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~g~~~~g~~v~d~T~~eL~~l~~~~~~ 191 (733)
|..|++.||+ +||.||+++ ||+++|.||..+.|. + . -+.++++++|.++.....
T Consensus 15 l~~Al~~g~~--svEaDV~l~-dg~l~V~Hd~~~l~~-~--~-------------------tl~~Lyl~pL~~~l~~~n- 68 (228)
T cd08577 15 LYDALSAGFG--SIEADVWLV-NGDLLVAHDEVDLSP-A--R-------------------TLESLYLDPLLEILDQNN- 68 (228)
T ss_pred hHHHHHcCCC--EEEEeEEEE-CCEEEEEcChhHcCc-c--C-------------------CHHHHhHHHHHHHHHHcC-
Confidence 6789999999 999999999 999999999998765 1 1 478999999988654321
Q ss_pred cCCCCCCCCCCcccccHHHHHHhhC-CCceEeeccCchhhhhcCCcHHHHHHHHHhhcCC
Q 004721 192 YSRTDKFDGNGFQILTVQDMARQIK-PPGLWLNIQHDAFYAQHNLSMRSFVLSVSRSVVV 250 (733)
Q Consensus 192 ~~~~~~~~g~~~~iptL~e~l~~~~-~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~ 250 (733)
+ ... ...+ ...|+||||...... ..+...+++.+++.+.
T Consensus 69 --------~---~~~------~~~~~~l~LlIDiKt~g~~t---~~~l~~~L~~~~~~~~ 108 (228)
T cd08577 69 --------G---QAY------NDPEQPLQLLIDIKTDGEST---YPALEEVLKPYIDIGY 108 (228)
T ss_pred --------C---CCC------CCCCCceEEEEEECCCChHH---HHHHHHHHHHHHhcCc
Confidence 1 111 2222 367999999654221 1345556666666554
No 92
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=99.14 E-value=7.1e-10 Score=113.48 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=47.2
Q ss_pred CChHHHHHHHHcCC-----eEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhc
Q 004721 328 PHTTIVLDAHKERL-----EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCF 395 (733)
Q Consensus 328 ~~~~~v~~ah~~Gl-----~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~ 395 (733)
..+++++.+|++|. +|++||||++ +++++++++| |||||||+|+.+.++++..
T Consensus 192 ~~~~lv~~~~~rd~~g~i~kV~vWTVn~~------------~~~~~ll~~G---VDGIITD~P~~i~~~l~~~ 249 (265)
T cd08576 192 TCARLREAIKKRDTPGYLGKVYGWTSDKG------------SSVRKLLRLG---VDGIITNYPKRIIDVLKES 249 (265)
T ss_pred ccHHHHHHHHHcCCCCcCCeEEEEeCCCH------------HHHHHHHhcC---CCEEEECCHHHHHHHHHhc
Confidence 46889999999999 9999999864 8899999999 9999999999888776554
No 93
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=98.33 E-value=2.1e-07 Score=62.16 Aligned_cols=30 Identities=27% Similarity=0.579 Sum_probs=23.2
Q ss_pred eEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCC
Q 004721 342 EVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (733)
Q Consensus 342 ~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~ 386 (733)
+|+.||+|++ +.++.++++| ||||+||+|+
T Consensus 1 kV~~WT~d~~------------~~~~~~l~~G---VDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKP------------ASWRELLDLG---VDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SH------------HHHHHHHHHT----SEEEES-HH
T ss_pred CeEEecCCCH------------HHHHHHHHcC---CCEeeCCCCC
Confidence 6899998764 8899999999 9999999984
No 94
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=98.31 E-value=4.7e-07 Score=60.47 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=23.2
Q ss_pred cEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChH
Q 004721 660 PVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPM 703 (733)
Q Consensus 660 ~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~ 703 (733)
+|+.||+|+.. .+..++ ++|||||+||+|+
T Consensus 1 kV~~WT~d~~~-------------~~~~~l-~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKPA-------------SWRELL-DLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SHH-------------HHHHHH-HHT-SEEEES-HH
T ss_pred CeEEecCCCHH-------------HHHHHH-HcCCCEeeCCCCC
Confidence 58999999886 788887 9999999999995
No 95
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.31 E-value=2.7e-06 Score=85.33 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=43.8
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
+..+|.-+ ....+|||++||.+|++.||+.||+||+-++||+|||+||.++
T Consensus 13 I~SSHNTYL~g~Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tl 66 (229)
T cd08592 13 IASSHNTYLTGDQLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTL 66 (229)
T ss_pred eeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 34456543 3568999999999999999999999999999999999999765
No 96
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.24 E-value=3.4e-06 Score=84.67 Aligned_cols=43 Identities=21% Similarity=0.113 Sum_probs=40.5
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCc
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~ 146 (733)
...+|||++||..|++.|++ +||+||+-++||++||+||.++.
T Consensus 25 Ql~~ess~eay~~AL~~GcR--~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 25 QLSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred ccCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 56899999999999999999 99999999999999999998763
No 97
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=97.97 E-value=6.6e-06 Score=82.25 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=43.9
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
+-.+|.-+ ....+|||++||.+|+..||+.||+||+-++||+|||+||.++
T Consensus 13 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tl 66 (229)
T cd08627 13 ISSSHNTYLTGDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTL 66 (229)
T ss_pred eecCcCccccCCccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 33455543 3568899999999999999999999999999999999999776
No 98
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=97.90 E-value=1.3e-05 Score=80.07 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=40.5
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCc
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLD 146 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~ 146 (733)
...+|||++||..|++.|++ .||+|||-++||++||+||.|+.
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 25 QFSSESSLEAYARCLRMGCR--CIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred ccCCcccHHHHHHHHHhCCC--EEEEEeecCCCCCEEEEeCCcCC
Confidence 45789999999999999999 99999999999999999999883
No 99
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=97.74 E-value=4.8e-06 Score=92.03 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=50.7
Q ss_pred CcceEEecCCCCC-------CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccc
Q 004721 406 ANLLVISKNGASG-------DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINS 462 (733)
Q Consensus 406 ~~~~iIaHRG~~~-------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rt 462 (733)
...+.++|||... ..+|||+..+..+.+.|+|++|+|||+|+|.++||+||..+...
T Consensus 323 ~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~ 386 (417)
T KOG2421|consen 323 GLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVS 386 (417)
T ss_pred chhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEe
Confidence 4567899999743 46899999999999999999999999999999999999988654
No 100
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=97.39 E-value=0.001 Score=62.24 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 417 SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 417 ~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...+.+|+..+|.++++.|++++|+||+.++||.++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 3567899999999999999999999999999999999999643
No 101
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=97.37 E-value=2.4e-05 Score=86.51 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCEEEEeCCCC-------CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCCcccc
Q 004721 90 DPPFVVARGGFS-------GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKLDNAS 149 (733)
Q Consensus 90 ~~~~viaHRG~~-------~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l~rtt 149 (733)
+..+-++|||.. ....|||+..+..|++.|+| ++|+|||+|+|.++||+||..+...-
T Consensus 323 ~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad--~ve~dvqlt~D~~~vvyh~f~~~~~~ 387 (417)
T KOG2421|consen 323 GLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGAD--LVEMDVQLTKDLVPVVYHDFVLLVSV 387 (417)
T ss_pred chhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhh--HHHhhcccccCCceeeeccceeEEee
Confidence 456789999964 24689999999999999999 99999999999999999999887654
No 102
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=97.25 E-value=0.00025 Score=72.91 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=38.1
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|+++|.+|+..||+.||+||+-++||+|||+|+.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred ecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 45678999999999999999999999999999999999875
No 103
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=97.11 E-value=0.00054 Score=70.46 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=37.9
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|+++|..|++.|++ .||+|||-++||++||+||.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCR--CVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred ecCccCHHHHHHHHHhCCC--EEEEEeEcCCCCCEEEEeCCcc
Confidence 4567799999999999999 9999999999999999999876
No 104
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=96.73 E-value=0.0022 Score=60.01 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 101 SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 101 ~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.....+|+..+|..+++.|++ ++|+||+.++||+++|+|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR--~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCR--CVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCC--EEEEEcccCCCCCEEEEECCcc
Confidence 346789999999999999999 9999999999999999999865
No 105
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=95.75 E-value=0.039 Score=56.51 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=38.0
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
...-+-|.++|..|+..|+. .||+|||=-.||+|||.|..|+
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 25 QLMSQSRVDMYAWVLQAGCR--CVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 34567789999999999999 9999999999999999998776
No 106
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=95.58 E-value=0.047 Score=56.06 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|..+|..|+..||. .||+|++=-.||++||.|..|+
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 26 LKGESSVELYSQVLLTGCR--CVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 3457889999999999999 9999999999999999998876
No 107
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=95.55 E-value=0.013 Score=58.89 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+.|.++|.+|+..||+.||+|++=-.||+|||+|..++
T Consensus 25 Ql~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 25 QLLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred cccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 356688899999999999999999999999999999997654
No 108
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=95.54 E-value=0.05 Score=55.99 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 104 ~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.-+-|.++|..|+..|+. .||+||+=-.||++||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 27 RGQSSVEGYIRALKRGCR--CVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred cCccCHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 456799999999999999 9999999999999999998776
No 109
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=95.33 E-value=1 Score=46.32 Aligned_cols=37 Identities=19% Similarity=0.057 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHHcCCCCcEEEeeeeecC------CCeEEEecCCC
Q 004721 106 DSSSIAYSLTLITSAPSVILWCDVQLTK------DEAGICFPDLK 144 (733)
Q Consensus 106 ENTl~af~~A~~~g~d~~~iE~DV~lTk------Dg~lVv~HD~~ 144 (733)
=|+.+.++.|+...+. +||.||.+-+ ++++|..|.+.
T Consensus 11 vNsk~~L~~aL~~~~~--miEaDV~l~~~~~~~~~~~PIMahPP~ 53 (244)
T PF10223_consen 11 VNSKAELEEALSSDIM--MIEADVLLGGLNTGNEDGIPIMAHPPA 53 (244)
T ss_pred cCCHHHHHHHhCCCCC--EEEEEEEeecccCCCCCCCceeeCCCC
Confidence 5899999999998888 9999999984 78898888763
No 110
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=95.23 E-value=0.079 Score=54.51 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=36.3
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecC--CCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTk--Dg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+|||=-. ||+|||+|-.|+
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCR--CIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCC
Confidence 4556789999999999999 9999999865 889999998776
No 111
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=95.22 E-value=0.02 Score=58.52 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=38.3
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+-|.++|.+|+..||+.||+|++=-.||+|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 25 QLMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 356678899999999999999999999999999999998776
No 112
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=95.17 E-value=0.075 Score=54.85 Aligned_cols=41 Identities=22% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=-.||+|||+|-.|+
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCR--CVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 4556799999999999999 9999999999999999998765
No 113
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=95.14 E-value=0.024 Score=57.28 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+-|.++|.+|+..||+.||+|++=-.||+|||+|..++
T Consensus 25 Ql~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 25 QLTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred ccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 356788999999999999999999999999999999997654
No 114
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=95.07 E-value=0.03 Score=56.65 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=41.7
Q ss_pred ceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 408 ~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
.+.-+|.-+ ....-+-|.++|..|+..||..||+||+-..||+|+|+|..++
T Consensus 12 fI~sSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 12 FIFSSHNSYLTGNQLSSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred EEeccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 345566543 2245577889999999999999999999999999999998653
No 115
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=95.04 E-value=0.024 Score=57.93 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||.|||+|-.++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 26 LLSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 45577899999999999999999999999999999998665
No 116
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=95.00 E-value=0.023 Score=58.30 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||.|||+|-.++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 26 LVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 45688999999999999999999999999999999998766
No 117
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=94.99 E-value=0.026 Score=57.91 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=38.0
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+-|..+|.+|+..||+.||+|++=-.||+|||+|..++
T Consensus 25 Ql~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 25 QLKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 345578899999999999999999999999999999998766
No 118
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=94.98 E-value=0.032 Score=56.17 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=38.2
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
...-+.|.++|..|+..|+. .||+|++=-.||+|||+|..|+
T Consensus 25 Ql~~~ss~e~Y~~aL~~GcR--cvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 25 QLLSQSRVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred cccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCc
Confidence 34567889999999999999 9999999999999999998876
No 119
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=94.98 E-value=2.4 Score=43.63 Aligned_cols=199 Identities=13% Similarity=0.196 Sum_probs=111.7
Q ss_pred CchHHHHHHHHHCCCCeeecCceeec------CCeEEEeeccccccccccCCCcCCCcccccccccccCcccccccCHHH
Q 004721 422 SCTNLAYQKAISDGVDFIDCPVQMSK------DGVPFCLSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDE 495 (733)
Q Consensus 422 ENTl~Af~~A~~~Gad~iE~DV~lTk------Dgv~Vv~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~E 495 (733)
=|+.+..++|++..+.+||.||.+-+ +++||..|.+..
T Consensus 11 vNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~------------------------------------ 54 (244)
T PF10223_consen 11 VNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT------------------------------------ 54 (244)
T ss_pred cCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC------------------------------------
Confidence 38889999999989999999999984 678888886321
Q ss_pred HhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcC--
Q 004721 496 IQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAG-- 573 (733)
Q Consensus 496 L~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~-- 573 (733)
..-.||||.|+.+... +. +|.+++|+.... +..+++|++..
T Consensus 55 --------------------------~SdltLee~L~~v~~~-~k-GIKLDFKs~eav---------~pSl~~L~~~~~~ 97 (244)
T PF10223_consen 55 --------------------------DSDLTLEEWLDEVLSS-RK-GIKLDFKSIEAV---------EPSLDLLAKLSDK 97 (244)
T ss_pred --------------------------CCcCcHHHHHHHHhcc-Cc-EEEEeccCHHHH---------HHHHHHHHHHhhc
Confidence 1224677777776644 33 899999986543 33445554421
Q ss_pred CCCCCCceEEEE------eCC--------H-HHHHHHHhc-cCceE--EEEeecc----cchhhhHHHHHHHHHHhHhc-
Q 004721 574 YNKQTALKVMIQ------STD--------S-SVLMKLREK-TSYEL--VYKVKEN----IRDALNQTIEDIKKFADSVV- 630 (733)
Q Consensus 574 ~~~~~~~~vii~------Sfd--------~-~~L~~lk~~-p~~~~--~~l~~~~----~~~~~~~~l~~i~~~a~~i~- 630 (733)
+. ..|+|- .+. + .+|..+++. |+.-+ |+..... .+-.+...++++...|.++.
T Consensus 98 l~----~PvWiNADIl~Gp~~~~~~~~Vd~~~Fl~~v~~~fP~~tLS~GWTT~~~~~~~~~~Yt~~~v~~M~~l~~~~~~ 173 (244)
T PF10223_consen 98 LT----RPVWINADILPGPNGPTIPGPVDAKEFLSLVAEKFPHATLSLGWTTRWGPEVPNGGYTWEMVEEMLELCKGINQ 173 (244)
T ss_pred cC----CCeeEeeeeccCCCCCCCCcccCHHHHHHHHHHhCCCEEEecCcccccCccCCCccccHHHHHHHHHHHHhhcc
Confidence 22 233222 222 2 377777777 76543 3322110 01134445666666666611
Q ss_pred CCCcccccCCccccccc-hHHHHHHHH-CCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHH
Q 004721 631 LSKESVYPLNSAFITSA-TDIVQRLQS-FKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAA 706 (733)
Q Consensus 631 ~~~~~i~~~~~~~l~~~-~~~v~~~~~-~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~ 706 (733)
.+...-+|.-......+ +.+...+.. ....+-+|+-.++. + ...+...+....|.+-|.-|-|+..+
T Consensus 174 l~Q~VTFpvRA~l~~~S~~~l~wLL~~s~r~SLTvWs~~~D~------v---~v~~Ll~lr~~~~~~rVyyDlpe~~~ 242 (244)
T PF10223_consen 174 LPQPVTFPVRAGLARQSWPQLSWLLQQSPRYSLTVWSSKSDP------V---SVEDLLYLRRNFDKSRVYYDLPEPLR 242 (244)
T ss_pred CCCceeeeehhhhhhccHHHHHHHHcCCCCceEEEEecCCCC------c---cHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 11122222211111112 223333332 46778888754432 1 12345555557899999999987654
No 120
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=94.96 E-value=0.025 Score=58.08 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=37.6
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 26 LRGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 45577999999999999999999999999999999999776
No 121
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=94.90 E-value=0.026 Score=58.03 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~ 460 (733)
..-+-|.++|.+|+..||+.||+|++--.||+|||+|-.++-
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlt 67 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLT 67 (258)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCccc
Confidence 455689999999999999999999999999999999987663
No 122
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=94.89 E-value=0.077 Score=54.61 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=36.0
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecC--CCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTk--Dg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+|+|=-. ||++||.|..|+
T Consensus 26 l~g~ss~e~y~~aL~~GcR--cvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 26 LAGNSSVEMYRQVLLSGCR--CVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCC--EEEEEeeCCCCCCCCCEEeeCCCc
Confidence 3456789999999999999 9999999876 689999999866
No 123
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=94.74 E-value=0.033 Score=57.24 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=37.7
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
...-+-|.++|.+|+..||+.||+|++--.||+|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 25 QLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred ccCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 345677899999999999999999999999999999998765
No 124
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=94.71 E-value=0.031 Score=57.36 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|..|+..||+.||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 26 LRSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred eecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 45577899999999999999999999999999999998765
No 125
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=94.64 E-value=0.036 Score=56.17 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||.|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 45678999999999999999999999998999999998654
No 126
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=94.62 E-value=0.034 Score=57.32 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++--.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 46678999999999999999999999999999999998655
No 127
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=94.52 E-value=0.13 Score=52.94 Aligned_cols=41 Identities=20% Similarity=0.064 Sum_probs=36.6
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCC--CeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKD--EAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkD--g~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=-.| |+|||+|-.|+
T Consensus 26 l~g~ss~e~y~~aL~~GcR--cvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCR--CIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCCCCEEeeCCCC
Confidence 4457889999999999999 99999999885 99999998776
No 128
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=94.45 E-value=0.038 Score=56.77 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeec--CCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++=-. ||.|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 45678999999999999999999999865 889999998766
No 129
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=94.33 E-value=0.064 Score=54.33 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=36.7
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|++.|+. .||+||+=..||+++|.|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 26 LSSRSSTAPIIEALLRGCR--VIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred cCCccCHHHHHHHHHhCCC--EEEEEeecCCCCCeEEEeCCCC
Confidence 3456788999999999999 9999999999999999998775
No 130
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=94.33 E-value=0.063 Score=54.28 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=37.8
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..||. .||+||+=-.||+|||+|..++
T Consensus 26 l~~~Ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 26 LTGESSVEAYIRALLRGCR--CVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCeEEeeCCCC
Confidence 4567899999999999999 9999999999999999998765
No 131
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=94.27 E-value=0.059 Score=55.07 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=36.7
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 104 ~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.-+-|.++|..|+..|+. .||+|||=-.||++||.|-.|+
T Consensus 27 ~~~ss~e~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 27 LSQSKVDMYARVLQAGCR--CVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred cCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 446789999999999999 9999999999999999998776
No 132
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=94.25 E-value=0.058 Score=55.49 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=37.8
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=..||++||+|-.|+
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 26 LVGPSDLDGYVSALRKGCR--CLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred ccCcccHHHHHHHHHhCCc--EEEEEeecCCCCCcEEecCCCc
Confidence 4568889999999999999 9999999999999999998876
No 133
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=94.07 E-value=0.052 Score=55.83 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=36.2
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeec--CCeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dgv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++=-. ||.|||+|..++
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 26 LAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCc
Confidence 44577899999999999999999999876 689999998765
No 134
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=94.04 E-value=0.067 Score=55.13 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=37.3
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=..||++||+|-.|+
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCR--CVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred ccCcccHHHHHHHHHcCCc--EEEEEeecCCCCCcEEeeCCcc
Confidence 3456789999999999999 9999999999999999998876
No 135
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=94.03 E-value=0.053 Score=55.85 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=36.8
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceeec--CCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMSK--DGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lTk--Dgv~Vv~HD~~L 459 (733)
...-+-|.++|.+|+..||+.||+|++=-. ||.|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 25 QFSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred ccCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCc
Confidence 345678999999999999999999999763 789999999876
No 136
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=93.91 E-value=0.074 Score=54.69 Aligned_cols=40 Identities=20% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 104 ~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.-+-|.++|..|+..||. .||+|||=-.||+|||.|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcR--cvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 27 RSESSTEAYIRCLRMGCR--CIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred ecCCCHHHHHHHHHcCCc--EEEEEeecCCCCCeEEeeCCCc
Confidence 446688999999999999 9999999999999999998876
No 137
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=93.84 E-value=0.08 Score=54.42 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=37.3
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..|+. .||+||+=-.||+|||+|..|+
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 26 LTGPSSTEAYIRALCKGCR--CLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred cCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 4456789999999999999 9999999999999999998876
No 138
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=93.70 E-value=0.092 Score=53.26 Aligned_cols=41 Identities=22% Similarity=0.112 Sum_probs=37.1
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|.++|..|+..||. .||+||+=-.||+|||.|-.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCR--CVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred cCCccCHHHHHHHHHhCCc--EEEEEeecCCCCCcEEeeCCCC
Confidence 3457889999999999999 9999999999999999998766
No 139
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=93.68 E-value=0.067 Score=55.00 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHCCCCeeecCceeecC--CeEEEeecccc
Q 004721 419 DYPSCTNLAYQKAISDGVDFIDCPVQMSKD--GVPFCLSFINL 459 (733)
Q Consensus 419 ~~PENTl~Af~~A~~~Gad~iE~DV~lTkD--gv~Vv~HD~~L 459 (733)
..-+-|.++|.+|+..||+.||+|++=-.| |.|||+|-.++
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCC
Confidence 456788999999999999999999999875 99999998766
No 140
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=93.27 E-value=0.086 Score=54.49 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=36.5
Q ss_pred CCCCCchHHHHHHHHHCCCCeeecCceee--cCCeEEEeecccc
Q 004721 418 GDYPSCTNLAYQKAISDGVDFIDCPVQMS--KDGVPFCLSFINL 459 (733)
Q Consensus 418 ~~~PENTl~Af~~A~~~Gad~iE~DV~lT--kDgv~Vv~HD~~L 459 (733)
...-+-|.+||..|+..||+.||+|++=- .|+.|||+|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 25 QLTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred ccCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcc
Confidence 34568889999999999999999999975 3589999999775
No 141
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.09 E-value=0.068 Score=61.60 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=42.4
Q ss_pred EecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 411 ISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 411 IaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
.+|.-+ -...-|.|++||.+|+.+||..||+|-+=-.||.|||+|..|+
T Consensus 322 SSHNTYLTGDQlrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 322 SSHNTYLTGDQLRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred ccCcceecccccccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEeccce
Confidence 445543 2356799999999999999999999999999999999999876
No 142
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=92.95 E-value=0.13 Score=53.14 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=36.8
Q ss_pred CCCCccHHHHHHHHHHcCCCCcEEEeeeeecC--CCeEEEecCCCC
Q 004721 102 GIFPDSSSIAYSLTLITSAPSVILWCDVQLTK--DEAGICFPDLKL 145 (733)
Q Consensus 102 ~~~pENTl~af~~A~~~g~d~~~iE~DV~lTk--Dg~lVv~HD~~l 145 (733)
...-+-|.++|..|+..|+. .||+|||=-. ||++||.|..|+
T Consensus 25 Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 25 QFSGLSSPEMYRQVLLSGCR--CVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred ccCCccCHHHHHHHHHcCCc--EEEEEecCCCCCCCCCEEeeCCCc
Confidence 34457799999999999999 9999999763 789999999887
No 143
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=91.75 E-value=0.22 Score=51.58 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeec--CCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLT--KDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lT--kDg~lVv~HD~~l 145 (733)
..-+-|.+||..|+..||. .||+||+=- .|+++||.|..|+
T Consensus 26 l~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 26 LTGLSSVEMYRQVLLTGCR--CIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCC--EEEEEecCCCCCCCCCEEeeCCcc
Confidence 4567889999999999999 999999976 3689999999876
No 144
>PLN02230 phosphoinositide phospholipase C 4
Probab=89.05 E-value=0.39 Score=55.51 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=43.4
Q ss_pred ceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccccc
Q 004721 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (733)
Q Consensus 408 ~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~r 461 (733)
.+-.+|.-+ ....-+-|.++|.+|+..||+.||+|++--.+|.|||+|..++-.
T Consensus 125 fI~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~t~ 181 (598)
T PLN02230 125 FIFTGHNSYLTGNQLSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTLTK 181 (598)
T ss_pred eeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCCcC
Confidence 344566642 244567789999999999999999999988889999999987743
No 145
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=88.38 E-value=0.43 Score=55.35 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=43.6
Q ss_pred EEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 94 VVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 94 viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
-..|--+ -...-|.|++||..|+.+||. .||+|.+=-.||.+|++|-.|+
T Consensus 321 sSSHNTYLTGDQlrSESSleaYar~LrMGCR--CIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 321 SSSHNTYLTGDQLRSESSLEAYARCLRMGCR--CIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred eccCcceecccccccccCHHHHHHHHHhCCe--EEEeecccCCCCCceEEeccce
Confidence 3456553 245789999999999999999 9999999999999999999986
No 146
>PLN02228 Phosphoinositide phospholipase C
Probab=86.52 E-value=0.66 Score=53.40 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=40.7
Q ss_pred eEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCe-EEEeeccccc
Q 004721 409 LVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLI 460 (733)
Q Consensus 409 ~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv-~Vv~HD~~L~ 460 (733)
+-.+|.-+ ....-+-|.++|.+|+..||..||+|++=-.||. |||+|..++-
T Consensus 117 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 172 (567)
T PLN02228 117 VYTGHNSYLTGNQVNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLT 172 (567)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCccc
Confidence 34455442 2345678999999999999999999999766665 8999997764
No 147
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=85.86 E-value=0.85 Score=53.14 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=46.1
Q ss_pred cCCcceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccc
Q 004721 404 KSANLLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (733)
Q Consensus 404 ~~~~~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~ 460 (733)
.+.-.+--+|.-+ ....-+-|+++|..|++.||..||+|++--.+|.|||+|-.|+-
T Consensus 295 LsHYFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~TlT 354 (746)
T KOG0169|consen 295 LSHYFISSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTLT 354 (746)
T ss_pred chhheEeccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCcccc
Confidence 3334455667653 23456889999999999999999999999999999999998764
No 148
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.78 E-value=0.89 Score=52.62 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=42.5
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 93 ~viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
+-.+|.-+ ....-+-|.++|..|+..|+. .||+|+|--.+|++||.|..|+
T Consensus 126 I~sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~ep~v~HG~t~ 179 (598)
T PLN02230 126 IFTGHNSYLTGNQLSSNCSELPIADALRRGVR--VVELDLWPRGTDDVCVKHGRTL 179 (598)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEeccCCCCCCcEEeeCCCC
Confidence 34577743 344567789999999999999 9999999888899999999887
No 149
>PLN02222 phosphoinositide phospholipase C 2
Probab=84.66 E-value=2.8 Score=48.55 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=39.7
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCe-EEEecCCCC
Q 004721 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEA-GICFPDLKL 145 (733)
Q Consensus 93 ~viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~-lVv~HD~~l 145 (733)
+-.+|.-+ ....-+-|.++|..|+..|+. .||+|+|=-.||. ++|+|-.||
T Consensus 114 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~~~v~HG~tl 168 (581)
T PLN02222 114 IFTGHNSYLTGNQLSSDCSEVPIIDALKKGVR--VIELDIWPNSDKDDIDVLHGMTL 168 (581)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEEeccCCCCCCCeEeeCCcc
Confidence 34567743 344567888999999999999 9999999766665 579997665
No 150
>PLN02952 phosphoinositide phospholipase C
Probab=84.15 E-value=1 Score=52.20 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=41.7
Q ss_pred ceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCC-eEEEeeccccc
Q 004721 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDG-VPFCLSFINLI 460 (733)
Q Consensus 408 ~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg-v~Vv~HD~~L~ 460 (733)
.+-.+|.-+ ....-+-|.++|.+|+..||+.||+|++--.|| .|||+|-.++-
T Consensus 133 fI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 189 (599)
T PLN02952 133 FIYTGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTLT 189 (599)
T ss_pred eeeccccccccCCccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCccc
Confidence 344566642 345668899999999999999999999977765 48999998764
No 151
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=82.44 E-value=1.2 Score=51.90 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=38.5
Q ss_pred CCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 103 IFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 103 ~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..-+-|+.+|-.|++.||. .||+|++--.+|.+||.|-.|+
T Consensus 313 l~g~sSvegyI~ALk~GcR--~vElD~Wdg~~~epvV~HG~Tl 353 (746)
T KOG0169|consen 313 LGGPSSVEGYIRALKKGCR--CVELDCWDGPNGEPVVYHGHTL 353 (746)
T ss_pred cCCccccHHHHHHHHhCCe--EEEEecccCCCCCeeEecCccc
Confidence 4568899999999999999 9999999999999999999987
No 152
>PLN02228 Phosphoinositide phospholipase C
Probab=82.25 E-value=1.5 Score=50.44 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=41.1
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCCe-EEEecCCCC
Q 004721 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDEA-GICFPDLKL 145 (733)
Q Consensus 93 ~viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~-lVv~HD~~l 145 (733)
+-.+|.-+ ....-+-|.++|..|+..|+. .||+|+|=-.||. +||+|..|+
T Consensus 117 I~SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcR--cvElD~wdg~~~~~p~v~Hg~t~ 171 (567)
T PLN02228 117 VYTGHNSYLTGNQVNSRSSVEPIVQALRKGVK--VIELDLWPNPSGNAAEVRHGRTL 171 (567)
T ss_pred eecccCccccCCcccCccCHHHHHHHHHcCCc--EEEEEeccCCCCCCCEEEeCCcc
Confidence 34567653 234667899999999999999 9999999766665 899999876
No 153
>PLN02591 tryptophan synthase
Probab=81.62 E-value=17 Score=37.65 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=98.4
Q ss_pred CCCchHHHHHHHHHCCCCeeecCceee---cCCeEEE-eeccccccccccCCCcCCCcccccccccccCcccccccCHHH
Q 004721 420 YPSCTNLAYQKAISDGVDFIDCPVQMS---KDGVPFC-LSFINLINSTNAAQSKFNSITTTIPEIMAGSGIFSFSLIWDE 495 (733)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lT---kDgv~Vv-~HD~~L~rtt~v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~E 495 (733)
-+|-|+...+...+.|||.||+-+=.| .||-.|- .|...|.+ | .--+-.++.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~-----------------------G-~~~~~~~~~ 69 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEK-----------------------G-TTLDSVISM 69 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHc-----------------------C-CCHHHHHHH
Confidence 346778878878899999999988664 2332221 11111111 1 111233455
Q ss_pred HhccCccccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCC
Q 004721 496 IQTLIPQISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYN 575 (733)
Q Consensus 496 L~~L~~~~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~ 575 (733)
+++++.....|.. --.+-|+-|+ .-++.+++.+++.+ .-++.|- .-+. +-.+.+.+..+++|+.
T Consensus 70 ~~~~r~~~~~p~i-lm~Y~N~i~~-----~G~~~F~~~~~~aG-v~Gviip-DLP~--------ee~~~~~~~~~~~gl~ 133 (250)
T PLN02591 70 LKEVAPQLSCPIV-LFTYYNPILK-----RGIDKFMATIKEAG-VHGLVVP-DLPL--------EETEALRAEAAKNGIE 133 (250)
T ss_pred HHHHhcCCCCCEE-EEecccHHHH-----hHHHHHHHHHHHcC-CCEEEeC-CCCH--------HHHHHHHHHHHHcCCe
Confidence 5555421111200 0011122111 35788888888762 2244432 1121 1234567777888886
Q ss_pred CCCCceEEEEeCCHH--HHHHHHhc-cCceEEEEeec-ccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHH
Q 004721 576 KQTALKVMIQSTDSS--VLMKLREK-TSYELVYKVKE-NIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIV 651 (733)
Q Consensus 576 ~~~~~~vii~Sfd~~--~L~~lk~~-p~~~~~~l~~~-~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v 651 (733)
.|.+.|.+.. -++.+.+. +.+- |++.. ... . ...-.+ ....+++
T Consensus 134 -----~I~lv~Ptt~~~ri~~ia~~~~gFI--Y~Vs~~GvT---G----------------~~~~~~------~~~~~~i 181 (250)
T PLN02591 134 -----LVLLTTPTTPTERMKAIAEASEGFV--YLVSSTGVT---G----------------ARASVS------GRVESLL 181 (250)
T ss_pred -----EEEEeCCCCCHHHHHHHHHhCCCcE--EEeeCCCCc---C----------------CCcCCc------hhHHHHH
Confidence 7777766653 46666666 5553 33321 000 0 000000 0114556
Q ss_pred HHHHHC-CCcEEE-EecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 652 QRLQSF-KLPVYV-ETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 652 ~~~~~~-Gl~v~~-wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
+.+++. +++|.+ ..+++.+ ++.+++ +.|+||++.=
T Consensus 182 ~~vk~~~~~Pv~vGFGI~~~e-------------~v~~~~-~~GADGvIVG 218 (250)
T PLN02591 182 QELKEVTDKPVAVGFGISKPE-------------HAKQIA-GWGADGVIVG 218 (250)
T ss_pred HHHHhcCCCceEEeCCCCCHH-------------HHHHHH-hcCCCEEEEC
Confidence 666663 666654 3556554 677775 9999999863
No 154
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=80.95 E-value=11 Score=36.88 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=89.6
Q ss_pred ccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc--c
Q 004721 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T 599 (733)
Q Consensus 522 ~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~--p 599 (733)
..|.+|+++.+.+++.++ .+++.+.--. |..--+.-++.|.++.-. + =+.|-.+..+++.|+. .
T Consensus 28 g~I~~l~~~v~~~~~~gK--~vfVHiDli~------Gl~~D~~~i~~L~~~~~~----d--GIISTk~~~i~~Ak~~gl~ 93 (175)
T PF04309_consen 28 GDIGNLKDIVKRLKAAGK--KVFVHIDLIE------GLSRDEAGIEYLKEYGKP----D--GIISTKSNLIKRAKKLGLL 93 (175)
T ss_dssp EECCCHHHHHHHHHHTT---EEEEECCGEE------TB-SSHHHHHHHHHTT------S--EEEESSHHHHHHHHHTT-E
T ss_pred CcHHHHHHHHHHHHHcCC--EEEEEehhcC------CCCCCHHHHHHHHHcCCC----c--EEEeCCHHHHHHHHHcCCE
Confidence 579999999999998854 5777776321 111124567888887633 1 3667889999999988 6
Q ss_pred CceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHH-CCCcEEEEec-CCccccccccc
Q 004721 600 SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETF-SNEFVSQAWDF 677 (733)
Q Consensus 600 ~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~-~Gl~v~~wTv-n~~~~~~~~~~ 677 (733)
.+...|+++.. +++...+......|..-.+.|.. -+.+++.+++ .+.++.+-++ .+++
T Consensus 94 tIqRiFliDS~-------al~~~~~~i~~~~PD~vEilPg~------~p~vi~~i~~~~~~PiIAGGLI~~~e------- 153 (175)
T PF04309_consen 94 TIQRIFLIDSS-------ALETGIKQIEQSKPDAVEILPGV------MPKVIKKIREETNIPIIAGGLIRTKE------- 153 (175)
T ss_dssp EEEEEE-SSHH-------HHHHHHHHHHHHT-SEEEEESCC------HHHHHCCCCCCCSS-EEEESS--SHH-------
T ss_pred EEEEeeeecHH-------HHHHHHHHHhhcCCCEEEEchHH------HHHHHHHHHHhcCCCEEeecccCCHH-------
Confidence 77778887652 23333333444556555555531 2567776554 4678877765 4444
Q ss_pred CCChHHHHHHHHhhcCcCEEEeCChHH
Q 004721 678 FSDPTVEINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 678 ~~d~~~e~~~~l~~~GVdgIiTD~P~~ 704 (733)
++.+.+ +.|+++|.|-.|+.
T Consensus 154 ------~v~~al-~aGa~aVSTS~~~L 173 (175)
T PF04309_consen 154 ------DVEEAL-KAGADAVSTSNKEL 173 (175)
T ss_dssp ------HHHHHC-CTTCEEEEE--HHH
T ss_pred ------HHHHHH-HcCCEEEEcCChHh
Confidence 788897 99999999988764
No 155
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.14 E-value=1.7 Score=50.35 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=40.9
Q ss_pred ceEEecCCC---CCCCCCchHHHHHHHHHCCCCeeecCceeecCCe-EEEeecccccc
Q 004721 408 LLVISKNGA---SGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGV-PFCLSFINLIN 461 (733)
Q Consensus 408 ~~iIaHRG~---~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv-~Vv~HD~~L~r 461 (733)
.+-.+|.-+ ....-+-|.++|.+|+..||+.||+|++--.||. ++|+|-.++-.
T Consensus 113 fI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tlt~ 170 (581)
T PLN02222 113 FIFTGHNSYLTGNQLSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTLTT 170 (581)
T ss_pred eeecccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCcccC
Confidence 344566642 2345678899999999999999999999766665 57999877643
No 156
>PLN02952 phosphoinositide phospholipase C
Probab=79.16 E-value=2.4 Score=49.29 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=41.2
Q ss_pred EEEEeCCC---CCCCCccHHHHHHHHHHcCCCCcEEEeeeeecCCC-eEEEecCCCC
Q 004721 93 FVVARGGF---SGIFPDSSSIAYSLTLITSAPSVILWCDVQLTKDE-AGICFPDLKL 145 (733)
Q Consensus 93 ~viaHRG~---~~~~pENTl~af~~A~~~g~d~~~iE~DV~lTkDg-~lVv~HD~~l 145 (733)
+-.+|.-+ ....-+-|.++|..|+..|+. .||+|+|=-.|| .+||+|-.|+
T Consensus 134 I~SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcR--cvElD~wdg~~~~~p~v~Hg~t~ 188 (599)
T PLN02952 134 IYTGHNSYLTGNQLSSDCSEVPIVKALQRGVR--VIELDLWPGSTKDEILVLHGRTL 188 (599)
T ss_pred eeccccccccCCccCCcCCHHHHHHHHHcCCc--EEEEEeecCCCCCCCEEEeCCcc
Confidence 34577743 345668899999999999999 999999977765 4899999876
No 157
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=78.13 E-value=6.2 Score=38.49 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=38.3
Q ss_pred cchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcC-cCEEEeCChHHHHHHHH
Q 004721 646 SATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAG-IDGVITEFPMTAARYRS 710 (733)
Q Consensus 646 ~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~G-VdgIiTD~P~~~~~~l~ 710 (733)
.-++.++.+|++|+.|++.. .+-.-.+.|+ ...+++.+.+ +|||||=.+..+....+
T Consensus 32 ~l~~~v~~~~~~gK~vfVHi------Dli~Gl~~D~--~~i~~L~~~~~~dGIISTk~~~i~~Ak~ 89 (175)
T PF04309_consen 32 NLKDIVKRLKAAGKKVFVHI------DLIEGLSRDE--AGIEYLKEYGKPDGIISTKSNLIKRAKK 89 (175)
T ss_dssp CHHHHHHHHHHTT-EEEEEC------CGEETB-SSH--HHHHHHHHTT--SEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEe------hhcCCCCCCH--HHHHHHHHcCCCcEEEeCCHHHHHHHHH
Confidence 34789999999999999883 1222233443 3444555766 99999999999887654
No 158
>PLN02223 phosphoinositide phospholipase C
Probab=77.38 E-value=2.3 Score=48.41 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=32.9
Q ss_pred chHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccc
Q 004721 423 CTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLI 460 (733)
Q Consensus 423 NTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~ 460 (733)
-|.++|.+|+..||+.||+|++--.++.++|.|-.++-
T Consensus 135 ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tlt 172 (537)
T PLN02223 135 YSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNFE 172 (537)
T ss_pred ccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCcee
Confidence 88999999999999999999996555667899987763
No 159
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=77.32 E-value=2.8 Score=44.20 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
+-.....++..++..|++++|+|++-.+|+.++|+|..++
T Consensus 32 ~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 32 WGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred cCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence 3578899999999999999999999999999999997654
No 160
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=76.42 E-value=6.5 Score=40.31 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=32.7
Q ss_pred hHHHHHHHHc---CCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEe
Q 004721 330 TTIVLDAHKE---RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (733)
Q Consensus 330 ~~~v~~ah~~---Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiT 382 (733)
.+.+++++.. |+.|.+|+.+| ....+++.+.| ++.|..
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~dd------------~~~ar~l~~~G---~~~vmP 150 (248)
T cd04728 110 IETLKAAEILVKEGFTVLPYCTDD------------PVLAKRLEDAG---CAAVMP 150 (248)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHcC---CCEeCC
Confidence 5788899988 99999999765 48899999999 999944
No 161
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=75.54 E-value=17 Score=39.03 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCCchHHHHHHHHHCCCCeeecCceeecCCeEE
Q 004721 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPF 452 (733)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~V 452 (733)
..+|+-..+..+++.|+..||+||+-..+|-..
T Consensus 42 ~~~~s~~~i~~QLd~GvR~LELDv~~d~~gg~~ 74 (324)
T cd08589 42 GLDYSHPPLADQLDSGVRQLELDVWADPEGGRY 74 (324)
T ss_pred cccCCCccHHHHHhhCcceEEEEEeecCCcccc
Confidence 346888899999999999999999876654333
No 162
>PLN02591 tryptophan synthase
Probab=74.75 E-value=34 Score=35.54 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeeeeec
Q 004721 104 FPDSSSIAYSLTLITSAPSVILWCDVQLT 132 (733)
Q Consensus 104 ~pENTl~af~~A~~~g~d~~~iE~DV~lT 132 (733)
-+|-|+...+...+.||| +||+-+=.|
T Consensus 14 ~~e~~~~~~~~l~~~Gad--~iElGiPfS 40 (250)
T PLN02591 14 DLDTTAEALRLLDACGAD--VIELGVPYS 40 (250)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEECCCCC
Confidence 468899999999999999 999988654
No 163
>PLN02223 phosphoinositide phospholipase C
Probab=73.16 E-value=3.4 Score=47.15 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=38.1
Q ss_pred EEEeCCCC---CCC-CccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 94 VVARGGFS---GIF-PDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 94 viaHRG~~---~~~-pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
-.+|.-+= ... ++-|.++|..|+..||. .||+|+|--.++.++|.|-.|+
T Consensus 118 ~SSHNTYL~g~Ql~~~~ss~e~y~~aL~~GcR--cvElD~W~~~~~~~~v~hG~tl 171 (537)
T PLN02223 118 HTSLKSYFTGNNVFGKLYSIEPIIDALEQGVR--VVELDLLPDGKDGICVRPKWNF 171 (537)
T ss_pred eccccccccCCcccCCcccHHHHHHHHHcCCc--EEEEEecCCCCCCCeEeeCCce
Confidence 45666542 123 34899999999999999 9999999655556788998876
No 164
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=72.55 E-value=5.4 Score=42.03 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=35.6
Q ss_pred CccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 105 PDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 105 pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
.+....++..++..|+. ++|+||+-.+|+.++|+|-.++
T Consensus 33 ~~tq~~~~~~qL~~G~R--~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 33 GLTQTEMYRQQLLSGCR--CVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred CcCcHHHHHHHHHcCCc--EEEEEeecCCCCCeEEEECCcc
Confidence 57888999999999999 9999999999999999997654
No 165
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.97 E-value=93 Score=32.47 Aligned_cols=150 Identities=15% Similarity=0.241 Sum_probs=80.8
Q ss_pred cceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceee---cCCeEEEe-eccccccccccCCCcCCCcccccccccc
Q 004721 407 NLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMS---KDGVPFCL-SFINLINSTNAAQSKFNSITTTIPEIMA 482 (733)
Q Consensus 407 ~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lT---kDgv~Vv~-HD~~L~rtt~v~~~~~~~r~~~~~~~~~ 482 (733)
++..|+|==+..--+|-|+.......+.|||+||+-+=.| .||-.|-. |...|++
T Consensus 11 ~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~--------------------- 69 (258)
T PRK13111 11 RKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAA--------------------- 69 (258)
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHc---------------------
Confidence 3445655333333457788888888899999999987653 23322211 1111111
Q ss_pred cCcccccccCHHHHhccCcc-ccCCCccccccCCcCCCCCccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcH
Q 004721 483 GSGIFSFSLIWDEIQTLIPQ-ISNPYFKFKLFRNPKNKNAGKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSV 561 (733)
Q Consensus 483 ~~g~~i~d~T~~EL~~L~~~-~~~~~~~~~~~~~~~~~g~~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~ 561 (733)
| .-.+-.++.+++++.. ...|.. .-.+.|+-|+ .-++.+++.+++. ++-++.| ..-+. +-
T Consensus 70 --G-~~~~~~~~~~~~~r~~~~~~p~v-lm~Y~N~i~~-----~G~e~f~~~~~~a-GvdGvii-pDLp~--------ee 130 (258)
T PRK13111 70 --G-VTLADVFELVREIREKDPTIPIV-LMTYYNPIFQ-----YGVERFAADAAEA-GVDGLII-PDLPP--------EE 130 (258)
T ss_pred --C-CCHHHHHHHHHHHHhcCCCCCEE-EEecccHHhh-----cCHHHHHHHHHHc-CCcEEEE-CCCCH--------HH
Confidence 2 1122345556665522 111210 0011122221 2478889888877 3336665 12221 23
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeCCH--HHHHHHHhc-cCc
Q 004721 562 TNSVMEALGNAGYNKQTALKVMIQSTDS--SVLMKLREK-TSY 601 (733)
Q Consensus 562 ~~~v~~~l~~~~~~~~~~~~vii~Sfd~--~~L~~lk~~-p~~ 601 (733)
.+.+.+..+++|+. .|.+.+.+. +-++.+.+. +.+
T Consensus 131 ~~~~~~~~~~~gl~-----~I~lvap~t~~eri~~i~~~s~gf 168 (258)
T PRK13111 131 AEELRAAAKKHGLD-----LIFLVAPTTTDERLKKIASHASGF 168 (258)
T ss_pred HHHHHHHHHHcCCc-----EEEEeCCCCCHHHHHHHHHhCCCc
Confidence 45677888999987 777777766 667777776 665
No 166
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=71.96 E-value=11 Score=38.94 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=60.8
Q ss_pred hHHHHHHHHcCCeEEEeecCC-CCC-cccCCCCChHHHH-HHHHhcCCcccceEEecCCC---CccccchhccccCCCCC
Q 004721 330 TTIVLDAHKERLEVFASNFAN-DIP-ISFNYSYDPLTEY-LSFIDNGDFSVDGVLSDFPL---TPSAAVDCFAHLGKNAS 403 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~-~~~-~~~~~~~d~~~~~-~~l~~~G~~~VDgIiTD~P~---~~~~~l~~~~~~~~~~~ 403 (733)
.+.+++||+.|+.+.+|..-. +.. ..+....|-.... +-..++| +|.|=|+||. .++++++.-
T Consensus 133 ~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG---ADIiK~~ytg~~e~F~~vv~~~-------- 201 (265)
T COG1830 133 SQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG---ADIIKTKYTGDPESFRRVVAAC-------- 201 (265)
T ss_pred HHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc---CCeEeecCCCChHHHHHHHHhC--------
Confidence 468899999999999997632 211 1011111122222 2344566 9999999996 344443322
Q ss_pred cCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCee
Q 004721 404 KSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (733)
Q Consensus 404 ~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~i 439 (733)
+-|+||+ .|.+..-++..+.--..|++.|+.++
T Consensus 202 --~vpVvia-GG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 202 --GVPVVIA-GGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred --CCCEEEe-CCCCCCChHHHHHHHHHHHHccCcch
Confidence 2466663 34445588899999999999999765
No 167
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=71.82 E-value=4.5 Score=38.13 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccc
Q 004721 420 YPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINL 459 (733)
Q Consensus 420 ~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L 459 (733)
+..+.-.++...++.|++++|+||+...++.++++|....
T Consensus 24 ~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~ 63 (146)
T PF00388_consen 24 WSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGITS 63 (146)
T ss_dssp HC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTSE
T ss_pred ccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCEe
Confidence 3567888999999999999999999999999999996443
No 168
>PRK06852 aldolase; Validated
Probab=71.20 E-value=11 Score=40.22 Aligned_cols=96 Identities=18% Similarity=0.069 Sum_probs=57.3
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCCh-HHHHHHHHhcCCcccceEEecCC-----C---CccccchhccccCC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDP-LTEYLSFIDNGDFSVDGVLSDFP-----L---TPSAAVDCFAHLGK 400 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~-~~~~~~l~~~G~~~VDgIiTD~P-----~---~~~~~l~~~~~~~~ 400 (733)
.+.+++||+.|+.+.+|..-.-....-....+- .--.+-..++| +|.|=|++| . .+.+++..
T Consensus 157 ~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELG---ADIVKv~y~~~~~~g~~e~f~~vv~~------ 227 (304)
T PRK06852 157 AQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLG---ADFVKVNYPKKEGANPAELFKEAVLA------ 227 (304)
T ss_pred HHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHc---CCEEEecCCCcCCCCCHHHHHHHHHh------
Confidence 467899999999999998643111000000001 11234556677 999999999 2 33333321
Q ss_pred CCCcCCcceEEecCCCCCCCCCchHHHHHHHHH-CCCCee
Q 004721 401 NASKSANLLVISKNGASGDYPSCTNLAYQKAIS-DGVDFI 439 (733)
Q Consensus 401 ~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~-~Gad~i 439 (733)
.++.|++|+ |++..-.+-.+.-.+.|++ .|+.++
T Consensus 228 ---~g~vpVvia--GG~k~~~~e~L~~v~~ai~~aGa~Gv 262 (304)
T PRK06852 228 ---AGRTKVVCA--GGSSTDPEEFLKQLYEQIHISGASGN 262 (304)
T ss_pred ---CCCCcEEEe--CCCCCCHHHHHHHHHHHHHHcCCcee
Confidence 124566774 5555444556777777888 898765
No 169
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=70.72 E-value=60 Score=33.92 Aligned_cols=137 Identities=13% Similarity=0.033 Sum_probs=76.0
Q ss_pred cHHHHHHhhCCCceEeeccCchhhh-h-cCCcHHHHHHHHHhhcCCceecc--------CCHHHHHHHHHhcCCCcccch
Q 004721 207 TVQDMARQIKPPGLWLNIQHDAFYA-Q-HNLSMRSFVLSVSRSVVVNYISS--------PEVNFLRSIAARFRPSMTKLV 276 (733)
Q Consensus 207 tL~e~l~~~~~~~l~iEiK~~~~~~-~-~~~~~~~~v~~~l~~~~~~~i~S--------F~~~~l~~l~~~~p~~~~~~~ 276 (733)
.|.++|. -.+..+.-|+|...... . ....-...+.+...+.|..-++- =+.+.++.+++.. ++|++
T Consensus 40 ~~~~~l~-~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v---~iPvl 115 (260)
T PRK00278 40 DFAAALR-AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV---SLPVL 115 (260)
T ss_pred CHHHHHh-cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc---CCCEE
Confidence 3666665 23477888999432111 0 00112234555666667643222 3467888888865 35554
Q ss_pred hhhcCCCccCCCCCcchhHHHhhHHHH-HhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcc
Q 004721 277 FRFLGKSEIEPTTNQTYGSLLKNLTFI-KTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPIS 355 (733)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~ 355 (733)
. .+...+ .| .+... ...|+.+......+-+. .-.++++.+|+.|+.+.+=+-+
T Consensus 116 ~----kdfi~~----~~-----qi~~a~~~GAD~VlLi~~~l~~~-------~l~~li~~a~~lGl~~lvevh~------ 169 (260)
T PRK00278 116 R----KDFIID----PY-----QIYEARAAGADAILLIVAALDDE-------QLKELLDYAHSLGLDVLVEVHD------ 169 (260)
T ss_pred e----eeecCC----HH-----HHHHHHHcCCCEEEEEeccCCHH-------HHHHHHHHHHHcCCeEEEEeCC------
Confidence 2 121111 11 11222 22356654433222110 1257999999999999987643
Q ss_pred cCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 356 FNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 356 ~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
.+|.+++.+.| +|.|-.+
T Consensus 170 -------~~E~~~A~~~g---adiIgin 187 (260)
T PRK00278 170 -------EEELERALKLG---APLIGIN 187 (260)
T ss_pred -------HHHHHHHHHcC---CCEEEEC
Confidence 36788899999 9999865
No 170
>PRK00208 thiG thiazole synthase; Reviewed
Probab=70.49 E-value=11 Score=38.66 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=32.6
Q ss_pred hHHHHHHHHc---CCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEe
Q 004721 330 TTIVLDAHKE---RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS 382 (733)
Q Consensus 330 ~~~v~~ah~~---Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiT 382 (733)
.+.|++++.. |+.|.+++.+| ..+.+++.++| +|.|..
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~~d------------~~~ak~l~~~G---~~~vmP 150 (250)
T PRK00208 110 IETLKAAEILVKEGFVVLPYCTDD------------PVLAKRLEEAG---CAAVMP 150 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHcC---CCEeCC
Confidence 5788899988 99999999765 48899999999 999944
No 171
>PRK08227 autoinducer 2 aldolase; Validated
Probab=69.87 E-value=15 Score=38.39 Aligned_cols=90 Identities=12% Similarity=0.001 Sum_probs=59.4
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHH----HHHHHHhcCCcccceEEecCCC-CccccchhccccCCCCCc
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLT----EYLSFIDNGDFSVDGVLSDFPL-TPSAAVDCFAHLGKNASK 404 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~----~~~~l~~~G~~~VDgIiTD~P~-~~~~~l~~~~~~~~~~~~ 404 (733)
.+.+++||+.|+.+.+|....+.. .|+.+ -.+-..++| +|.|=|+||. .+.++++ .
T Consensus 130 ~~v~~ea~~~G~Plla~~prG~~~------~~~~~~ia~aaRiaaELG---ADiVK~~y~~~~f~~vv~----------a 190 (264)
T PRK08227 130 IQLVDAGLRYGMPVMAVTAVGKDM------VRDARYFSLATRIAAEMG---AQIIKTYYVEEGFERITA----------G 190 (264)
T ss_pred HHHHHHHHHhCCcEEEEecCCCCc------CchHHHHHHHHHHHHHHc---CCEEecCCCHHHHHHHHH----------c
Confidence 467899999999999998654321 12212 234456677 9999999997 3333332 1
Q ss_pred CCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeee
Q 004721 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFID 440 (733)
Q Consensus 405 ~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE 440 (733)
.+.|++|+ |++..-.+-.+.-.+.|++.||.++=
T Consensus 191 ~~vPVvia--GG~k~~~~~~L~~v~~ai~aGa~Gv~ 224 (264)
T PRK08227 191 CPVPIVIA--GGKKLPERDALEMCYQAIDEGASGVD 224 (264)
T ss_pred CCCcEEEe--CCCCCCHHHHHHHHHHHHHcCCceee
Confidence 24577774 55554446677777889999997763
No 172
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=66.95 E-value=7.6 Score=36.58 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=31.5
Q ss_pred CccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCCC
Q 004721 105 PDSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLKL 145 (733)
Q Consensus 105 pENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~l 145 (733)
..+.-.++...++.|+. ++|+||+...++.++++|....
T Consensus 25 ~~~Q~~~i~~QL~~GiR--~lDlrv~~~~~~~~~v~Hg~~~ 63 (146)
T PF00388_consen 25 SKTQSWSIREQLESGIR--YLDLRVWDGNDGELVVYHGITS 63 (146)
T ss_dssp C-B-SHHHHHHHHTT----EEEEEEEEETTSSEEEEETTSE
T ss_pred cCcchHhHHHHHhccCc--eEEEEEEcCCCCceEEEeCCEe
Confidence 56777899999999999 9999999999999999996654
No 173
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=64.81 E-value=16 Score=38.44 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhHhcCCCcccccCCcc-------------ccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHH
Q 004721 617 QTIEDIKKFADSVVLSKESVYPLNSA-------------FITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV 683 (733)
Q Consensus 617 ~~l~~i~~~a~~i~~~~~~i~~~~~~-------------~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~ 683 (733)
...+....||...+.....+-...+. .-..-+++++.++++|+.|.+|.-....-+ ..++..+.++
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~-~~~~~~~~~~ 110 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGN-VANLEKQLDE 110 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTB-HHHHHCCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchh-hHhHHHHHHH
Confidence 44555666777776643333111110 012247899999999999999976655100 0112223333
Q ss_pred HHHHHHhhcCcCEEEeCChHH
Q 004721 684 EINTYYEGAGIDGVITEFPMT 704 (733)
Q Consensus 684 e~~~~l~~~GVdgIiTD~P~~ 704 (733)
.+..+ .++||.||=+|+-+.
T Consensus 111 ~f~~~-~~~Gv~GvKidF~~~ 130 (273)
T PF10566_consen 111 AFKLY-AKWGVKGVKIDFMDR 130 (273)
T ss_dssp HHHHH-HHCTEEEEEEE--SS
T ss_pred HHHHH-HHcCCCEEeeCcCCC
Confidence 44544 799999999997654
No 174
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=64.20 E-value=26 Score=35.78 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=55.6
Q ss_pred hHHHHHHHHcCCeEEEeecCCC-CCcccCCCCChHHH-HHHHHhcCCcccceEEecCCCCccccchhccccCCCCCcCCc
Q 004721 330 TTIVLDAHKERLEVFASNFAND-IPISFNYSYDPLTE-YLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSAN 407 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~-~~~~~~~~~d~~~~-~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~~~~~~~~~~~~ 407 (733)
.++++.+|+.|+++.++..... .... ....+.... .+...+.| +|.|-|.+|.-. +.++...+ ..+.
T Consensus 112 ~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~~G---aD~Ik~~~~~~~-~~~~~i~~------~~~~ 180 (235)
T cd00958 112 ARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAELG---ADIVKTKYTGDA-ESFKEVVE------GCPV 180 (235)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHHHC---CCEEEecCCCCH-HHHHHHHh------cCCC
Confidence 4577788999999999774311 0000 000011122 34477888 999999876521 22222221 1123
Q ss_pred ceEEecCCC-CCCCCCchHHHHHHHHHCCCCee
Q 004721 408 LLVISKNGA-SGDYPSCTNLAYQKAISDGVDFI 439 (733)
Q Consensus 408 ~~iIaHRG~-~~~~PENTl~Af~~A~~~Gad~i 439 (733)
|++++ |+ ...-+|-++.-.+.+++.|++++
T Consensus 181 pvv~~--GG~~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 181 PVVIA--GGPKKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred CEEEe--CCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 55554 44 44466677777888899999866
No 175
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=59.64 E-value=52 Score=33.17 Aligned_cols=44 Identities=20% Similarity=0.051 Sum_probs=31.4
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
...++.||+.|..+.+=.+|+. |+....+++.++| +|.++--+.
T Consensus 96 ~~~i~~A~~~~~~v~iDl~~~~---------~~~~~~~~l~~~g---vd~~~~H~g 139 (217)
T COG0269 96 KKAIKVAKEYGKEVQIDLIGVW---------DPEQRAKWLKELG---VDQVILHRG 139 (217)
T ss_pred HHHHHHHHHcCCeEEEEeecCC---------CHHHHHHHHHHhC---CCEEEEEec
Confidence 4688999999999999888764 3444555554488 777665543
No 176
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=59.46 E-value=27 Score=37.85 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=58.0
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCccc--CCC--CChH-HHHHHHHhcCCcccceEEecCCCCccccchh----------
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISF--NYS--YDPL-TEYLSFIDNGDFSVDGVLSDFPLTPSAAVDC---------- 394 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~--~~~--~d~~-~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~---------- 394 (733)
..++++||+.|+.+.+|..-.-....- +|. .|-. --.+-..++| +|.|=|++|......-+.
T Consensus 182 ~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG---ADIVKv~yp~~~~~f~~v~~~~~~~~~~ 258 (348)
T PRK09250 182 SEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG---ADIIKQKLPTNNGGYKAINFGKTDDRVY 258 (348)
T ss_pred HHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc---CCEEEecCCCChhhHHHhhccccccccc
Confidence 467899999999999998643110000 000 0111 1234455667 999999999643221111
Q ss_pred -----------ccccCCCCCcCCcceEEecCCCCCCCCCchHHHHHHH---HHCCCCee
Q 004721 395 -----------FAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKA---ISDGVDFI 439 (733)
Q Consensus 395 -----------~~~~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A---~~~Gad~i 439 (733)
+.+.-.....++.|++++ |++..-.+..+.--+.| ++.|+.++
T Consensus 259 ~~~~~~~~~~~~~~~V~ac~ag~vpVviA--GG~k~~~~e~L~~v~~a~~~i~aGa~Gv 315 (348)
T PRK09250 259 SKLTSDHPIDLVRYQVANCYMGRRGLINS--GGASKGEDDLLDAVRTAVINKRAGGMGL 315 (348)
T ss_pred ccccccchHHHHHHHHHhhccCCceEEEe--CCCCCCHHHHHHHHHHHHHhhhcCCcch
Confidence 000000011235676664 55444456677777888 88888665
No 177
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=57.22 E-value=1.4e+02 Score=31.37 Aligned_cols=38 Identities=8% Similarity=-0.146 Sum_probs=27.4
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHcCCCCcEEEeeeeec
Q 004721 93 FVVARGGFSGIFPDSSSIAYSLTLITSAPSVILWCDVQLT 132 (733)
Q Consensus 93 ~viaHRG~~~~~pENTl~af~~A~~~g~d~~~iE~DV~lT 132 (733)
..|.|==+.-..+|-|+...+...+.||| +||+-|=.|
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad--~iElGiPfS 53 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGAD--IIELGIPYS 53 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCC--EEEECCCCC
Confidence 34444333333568889989999999999 999988654
No 178
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=57.00 E-value=13 Score=39.91 Aligned_cols=42 Identities=21% Similarity=-0.054 Sum_probs=34.0
Q ss_pred CCccHHHHHHHHHHcCCCCcEEEeeeeecCC--------------------CeEEEecCCCCcc
Q 004721 104 FPDSSSIAYSLTLITSAPSVILWCDVQLTKD--------------------EAGICFPDLKLDN 147 (733)
Q Consensus 104 ~pENTl~af~~A~~~g~d~~~iE~DV~lTkD--------------------g~lVv~HD~~l~r 147 (733)
..+|+-..+..+++.|+. .+|+||+-..+ +.+-|+|-.+++.
T Consensus 42 ~~~~s~~~i~~QLd~GvR--~LELDv~~d~~gg~~a~P~~~~~~~~~~~~~~g~~V~H~~~~d~ 103 (324)
T cd08589 42 GLDYSHPPLADQLDSGVR--QLELDVWADPEGGRYAHPLGLAPDDAAVMKKPGWKVSHIPDLDN 103 (324)
T ss_pred cccCCCccHHHHHhhCcc--eEEEEEeecCCcccccccccccccccccccCCCeEEEcCCCcCC
Confidence 446888999999999999 99999998664 4577788777753
No 179
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=55.91 E-value=43 Score=35.00 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=66.4
Q ss_pred ccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEE----EEeCCHHHHHHHHh
Q 004721 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVM----IQSTDSSVLMKLRE 597 (733)
Q Consensus 522 ~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vi----i~Sfd~~~L~~lk~ 597 (733)
.++-.|+|..+.+-..++++++.|-...+ .+.+.|+++|.++.-. -.|. +||-+...++.+.+
T Consensus 97 ApvevLre~ye~aL~~~~VVGLsIgTRPD---------Clpd~VldlL~e~~~r----~~vWvELGLQT~h~~Tlk~iNR 163 (312)
T COG1242 97 APVEVLREMYEQALSEAGVVGLSIGTRPD---------CLPDDVLDLLAEYNKR----YEVWVELGLQTAHDKTLKRINR 163 (312)
T ss_pred CcHHHHHHHHHHHhCcCCeeEEeecCCCC---------CCcHHHHHHHHHHhhh----eEEEEEeccchhhHHHHHHHhc
Confidence 45778899998887776777777776654 3446677887777522 0111 23333333333221
Q ss_pred ccCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCccccccccc
Q 004721 598 KTSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDF 677 (733)
Q Consensus 598 ~p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~ 677 (733)
..++ ..-.+.+++++++|++|.+..++.-. +.-
T Consensus 164 ----------------------------------gHd~---------~~y~dav~r~rkrgIkvc~HiI~GLP----gE~ 196 (312)
T COG1242 164 ----------------------------------GHDF---------ACYVDAVKRLRKRGIKVCTHLINGLP----GET 196 (312)
T ss_pred ----------------------------------ccch---------HHHHHHHHHHHHcCCeEEEEEeeCCC----CCC
Confidence 0000 00135688899999999999887542 222
Q ss_pred CCChHHHHHHHHhhcCcCEE
Q 004721 678 FSDPTVEINTYYEGAGIDGV 697 (733)
Q Consensus 678 ~~d~~~e~~~~l~~~GVdgI 697 (733)
+.+..+.+..+ ..+|||||
T Consensus 197 ~~~mleTak~v-~~~~v~GI 215 (312)
T COG1242 197 RDEMLETAKIV-AELGVDGI 215 (312)
T ss_pred HHHHHHHHHHH-HhcCCceE
Confidence 22222334444 58999998
No 180
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=54.17 E-value=67 Score=35.40 Aligned_cols=157 Identities=22% Similarity=0.253 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHH-hhcccccCCccccccCCCccCCCCChHHHHHH
Q 004721 258 VNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYLLPHTTIVLDA 336 (733)
Q Consensus 258 ~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~a 336 (733)
|+-|+++|+..| ++++-.++-+.+.+. -+.|++-... +.+. .+-+|+.+.. +... -+....-..-++.+
T Consensus 65 WeRLr~lk~~~~--nT~LQMLlRGQNlvG---YrhyaDDvVe-~Fv~ka~~nGidvfR--iFDA--lND~RNl~~ai~a~ 134 (472)
T COG5016 65 WERLRELKKAVP--NTKLQMLLRGQNLVG---YRHYADDVVE-KFVEKAAENGIDVFR--IFDA--LNDVRNLKTAIKAA 134 (472)
T ss_pred HHHHHHHHHhCC--CcHHHHHHccCcccc---ccCCchHHHH-HHHHHHHhcCCcEEE--echh--ccchhHHHHHHHHH
Confidence 467999999998 788776555544332 1334432210 1111 1233443211 1110 00000013467888
Q ss_pred HHcCCeE---EEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC------CCCccccchhccccCCCCCcCCc
Q 004721 337 HKERLEV---FASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF------PLTPSAAVDCFAHLGKNASKSAN 407 (733)
Q Consensus 337 h~~Gl~V---~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~------P~~~~~~l~~~~~~~~~~~~~~~ 407 (733)
++.|..+ ..||...- ....+ -.+-.+++.++| ||.|.--+ |..+-+.++.... .-+-
T Consensus 135 kk~G~h~q~~i~YT~sPv--Ht~e~---yv~~akel~~~g---~DSIciKDmaGlltP~~ayelVk~iK~------~~~~ 200 (472)
T COG5016 135 KKHGAHVQGTISYTTSPV--HTLEY---YVELAKELLEMG---VDSICIKDMAGLLTPYEAYELVKAIKK------ELPV 200 (472)
T ss_pred HhcCceeEEEEEeccCCc--ccHHH---HHHHHHHHHHcC---CCEEEeecccccCChHHHHHHHHHHHH------hcCC
Confidence 9999876 45665431 11111 135577888899 99996432 3333333333321 0112
Q ss_pred ceEEecCCC-CCCCCCchHHHHHHHHHCCCCeeecCc
Q 004721 408 LLVISKNGA-SGDYPSCTNLAYQKAISDGVDFIDCPV 443 (733)
Q Consensus 408 ~~iIaHRG~-~~~~PENTl~Af~~A~~~Gad~iE~DV 443 (733)
| |.-|-=+ +| =+..+|-+|+++|+|+|.+-+
T Consensus 201 p-v~lHtH~TsG----~a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 201 P-VELHTHATSG----MAEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred e-eEEecccccc----hHHHHHHHHHHhCcchhhhhh
Confidence 2 3334322 23 256889999999999986544
No 181
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=53.91 E-value=32 Score=36.89 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=56.7
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCc--------cccchhccccCC
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTP--------SAAVDCFAHLGK 400 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~--------~~~l~~~~~~~~ 400 (733)
+.++++++|+.|..|++ +|.+ .++.+++.+.| +|+|+..-.+.- ...+....+.
T Consensus 98 p~~~i~~lk~~g~~v~~-~v~s------------~~~a~~a~~~G---aD~Ivv~g~eagGh~g~~~~~~ll~~v~~~-- 159 (307)
T TIGR03151 98 PGKYIPRLKENGVKVIP-VVAS------------VALAKRMEKAG---ADAVIAEGMESGGHIGELTTMALVPQVVDA-- 159 (307)
T ss_pred cHHHHHHHHHcCCEEEE-EcCC------------HHHHHHHHHcC---CCEEEEECcccCCCCCCCcHHHHHHHHHHH--
Confidence 35699999999999875 5543 37788999999 999997543221 1111121110
Q ss_pred CCCcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCce
Q 004721 401 NASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQ 444 (733)
Q Consensus 401 ~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~ 444 (733)
-+ .-||+-.|-.. -..+.+|+..||++|-+.-+
T Consensus 160 ----~~-iPviaaGGI~~------~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 160 ----VS-IPVIAAGGIAD------GRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred ----hC-CCEEEECCCCC------HHHHHHHHHcCCCEeecchH
Confidence 11 23677777543 44577888899999887663
No 182
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=52.08 E-value=21 Score=34.86 Aligned_cols=66 Identities=21% Similarity=0.125 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCcccceEEecCCCCccccchhccccCCCCCcCCcceEEecCCCCCC--CCCchHHHHHHHHHCCCCeeec
Q 004721 364 TEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLLVISKNGASGD--YPSCTNLAYQKAISDGVDFIDC 441 (733)
Q Consensus 364 ~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~~~~~~~~~~~~~~iIaHRG~~~~--~PENTl~Af~~A~~~Gad~iE~ 441 (733)
..++++++.| ||||++.- ++++...+. ..+.+..++++-|+... ..+.++..-+.|.+.|||++.+
T Consensus 17 ~~~~~~~~~g---v~gi~~~g-----~~i~~~~~~----~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 17 KLCDEAIEYG---FAAVCVNP-----GYVRLAADA----LAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHHhC---CcEEEECH-----HHHHHHHHH----hCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 5577788889 99999985 333332211 01103446777776543 3788899999999999999887
No 183
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=51.94 E-value=1e+02 Score=32.02 Aligned_cols=142 Identities=13% Similarity=0.022 Sum_probs=79.1
Q ss_pred ccHHHHHHhh-CCCceEeeccC--chhhh-hcCCcHHHHHHHHHhhcCCceec------cC--CHHHHHHHHHhcCCCcc
Q 004721 206 LTVQDMARQI-KPPGLWLNIQH--DAFYA-QHNLSMRSFVLSVSRSVVVNYIS------SP--EVNFLRSIAARFRPSMT 273 (733)
Q Consensus 206 ptL~e~l~~~-~~~~l~iEiK~--~~~~~-~~~~~~~~~v~~~l~~~~~~~i~------SF--~~~~l~~l~~~~p~~~~ 273 (733)
..|-++|+.. .+..++.|+|. |.... ....+. ..+.+..+++|...+| .| +++.|+.+++... .
T Consensus 33 r~f~~AL~~~~~~~~vIAEvKkaSPS~G~ir~d~dp-~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~---~ 108 (254)
T COG0134 33 RDFYAALKEASGKPAVIAEVKKASPSKGLIREDFDP-VEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVD---L 108 (254)
T ss_pred ccHHHHHHhcCCCceEEEEeecCCCCCCcccccCCH-HHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcC---C
Confidence 4688888887 35789999994 33210 111222 3366777777764221 13 4567888877763 4
Q ss_pred cchhhhcCCCccCCCCCcchhHHHhhHHHHHh-hcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCC
Q 004721 274 KLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKT-FASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDI 352 (733)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~ 352 (733)
|+.. .+.+. ..|. +...+. .|+.+..-...+... .-.++++.||+.|+.|.+=+=|
T Consensus 109 PvL~----KDFii----D~yQ-----I~~Ar~~GADavLLI~~~L~~~-------~l~el~~~A~~LGm~~LVEVh~--- 165 (254)
T COG0134 109 PVLR----KDFII----DPYQ-----IYEARAAGADAVLLIVAALDDE-------QLEELVDRAHELGMEVLVEVHN--- 165 (254)
T ss_pred Ceee----ccCCC----CHHH-----HHHHHHcCcccHHHHHHhcCHH-------HHHHHHHHHHHcCCeeEEEECC---
Confidence 5432 22211 0111 111111 133222111111000 0167999999999999998643
Q ss_pred CcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 353 PISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 353 ~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
.+|+.+.++.| .+-|=-|+=++
T Consensus 166 ----------~eEl~rAl~~g---a~iIGINnRdL 187 (254)
T COG0134 166 ----------EEELERALKLG---AKIIGINNRDL 187 (254)
T ss_pred ----------HHHHHHHHhCC---CCEEEEeCCCc
Confidence 38999999999 88887776553
No 184
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=51.09 E-value=16 Score=39.81 Aligned_cols=118 Identities=14% Similarity=0.008 Sum_probs=69.6
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhccccC---C---CCC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLG---K---NAS 403 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~~~~---~---~~~ 403 (733)
.+.|+.||++|.++++ |+|.-.... ....-...++++.+.| ||+||-..|..+.-+.+...+.+ + +..
T Consensus 52 ~e~i~~ah~~gkk~~V-~~N~~~~~~--~~~~~~~~l~~l~e~G---vDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~ 125 (347)
T COG0826 52 AEAVELAHSAGKKVYV-AVNTLLHND--ELETLERYLDRLVELG---VDAVIVADPGLIMLARERGPDLPIHVSTQANVT 125 (347)
T ss_pred HHHHHHHHHcCCeEEE-Eeccccccc--hhhHHHHHHHHHHHcC---CCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecC
Confidence 5789999999999877 445421000 0001135678889899 99999999998765554443221 0 011
Q ss_pred cCCcceEEecCCCC--CCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeec
Q 004721 404 KSANLLVISKNGAS--GDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSF 456 (733)
Q Consensus 404 ~~~~~~iIaHRG~~--~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD 456 (733)
+........-+|.. -...|+|+.-..+..+.-.+ +|+-|.. -|-+.+++.
T Consensus 126 N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~~-veiEvfV--hGalcia~S 177 (347)
T COG0826 126 NAETAKFWKELGAKRVVLPRELSLEEIKEIKEQTPD-VEIEVFV--HGALCIAYS 177 (347)
T ss_pred CHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCCC-ceEEEEE--ecchhhccC
Confidence 11112222334543 25789999999999875333 6666554 344444443
No 185
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=50.11 E-value=2.5e+02 Score=27.31 Aligned_cols=140 Identities=18% Similarity=0.216 Sum_probs=88.8
Q ss_pred ccccCHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc--c
Q 004721 522 GKFMKLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK--T 599 (733)
Q Consensus 522 ~~IptLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~--p 599 (733)
..|..+++....+++.++ .++|.+.--. |..-.+..++.+.+..-. + =+.|--..++...+++ +
T Consensus 32 ~~i~~ik~ivk~lK~~gK--~vfiHvDLv~------Gl~~~e~~i~fi~~~~~p----d--GIISTk~~~i~~Akk~~~~ 97 (181)
T COG1954 32 GHILNIKEIVKKLKNRGK--TVFIHVDLVE------GLSNDEVAIEFIKEVIKP----D--GIISTKSNVIKKAKKLGIL 97 (181)
T ss_pred chhhhHHHHHHHHHhCCc--EEEEEeHHhc------ccCCchHHHHHHHHhccC----C--eeEEccHHHHHHHHHcCCc
Confidence 468999999999998854 4666665211 111112334555444322 1 2456667777777777 7
Q ss_pred CceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHH-CCCcEEEEec-CCccccccccc
Q 004721 600 SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETF-SNEFVSQAWDF 677 (733)
Q Consensus 600 ~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~-~Gl~v~~wTv-n~~~~~~~~~~ 677 (733)
-+...|++++. +++.....+....|.+--+.|. .-|.+++.+.+ -+.++.+-++ ++++
T Consensus 98 aIqR~FilDS~-------Al~~~~~~i~~~~pD~iEvLPG------v~Pkvi~~i~~~t~~piIAGGLi~t~E------- 157 (181)
T COG1954 98 AIQRLFILDSI-------ALEKGIKQIEKSEPDFIEVLPG------VMPKVIKEITEKTHIPIIAGGLIETEE------- 157 (181)
T ss_pred eeeeeeeecHH-------HHHHHHHHHHHcCCCEEEEcCc------ccHHHHHHHHHhcCCCEEeccccccHH-------
Confidence 78888887652 3444444455566665556663 24778887655 6788888765 4444
Q ss_pred CCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 678 FSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 678 ~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
|+...+ +.|+-+|.|-+-
T Consensus 158 ------ev~~Al-~aGA~avSTs~~ 175 (181)
T COG1954 158 ------EVREAL-KAGAVAVSTSNT 175 (181)
T ss_pred ------HHHHHH-HhCcEEEeecch
Confidence 888887 999999987643
No 186
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=44.40 E-value=2.5e+02 Score=28.12 Aligned_cols=128 Identities=10% Similarity=-0.051 Sum_probs=67.0
Q ss_pred CCceEeeccC--chhhhhcCCcHHHHHHHHHhhcCCcee------ccC--CHHHHHHHHHhcCCCcccchhhhcCCCccC
Q 004721 217 PPGLWLNIQH--DAFYAQHNLSMRSFVLSVSRSVVVNYI------SSP--EVNFLRSIAARFRPSMTKLVFRFLGKSEIE 286 (733)
Q Consensus 217 ~~~l~iEiK~--~~~~~~~~~~~~~~v~~~l~~~~~~~i------~SF--~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~ 286 (733)
+..+..|+|. |....-....-...+.+...+.|...+ ..| +.+.++.+++.. ++|+.. .+ ...
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v---~iPi~~--~~--~i~ 82 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV---SLPVLR--KD--FII 82 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc---CCCEEE--CC--eec
Confidence 3678899994 322111111223344555566665322 123 567888888864 456553 11 110
Q ss_pred CCCCcchhHHHhhHHHH-HhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHH
Q 004721 287 PTTNQTYGSLLKNLTFI-KTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTE 365 (733)
Q Consensus 287 ~~~~~~~~~~~~~l~~~-~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~ 365 (733)
. . + .++.+ ...++++......+-. ..-.++++.++..|+.+.+-+ .+ .++
T Consensus 83 ~---~-~-----~v~~~~~~Gad~v~l~~~~~~~-------~~~~~~~~~~~~~g~~~~v~v-~~------------~~e 133 (217)
T cd00331 83 D---P-Y-----QIYEARAAGADAVLLIVAALDD-------EQLKELYELARELGMEVLVEV-HD------------EEE 133 (217)
T ss_pred C---H-H-----HHHHHHHcCCCEEEEeeccCCH-------HHHHHHHHHHHHcCCeEEEEE-CC------------HHH
Confidence 0 0 0 11212 2235555432221110 012567888899999885444 22 267
Q ss_pred HHHHHhcCCcccceEEec
Q 004721 366 YLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 366 ~~~l~~~G~~~VDgIiTD 383 (733)
++++.++| +|.|.+.
T Consensus 134 ~~~~~~~g---~~~i~~t 148 (217)
T cd00331 134 LERALALG---AKIIGIN 148 (217)
T ss_pred HHHHHHcC---CCEEEEe
Confidence 88999999 9999665
No 187
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=43.78 E-value=92 Score=32.69 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHCCCCeeecCceeecCCeEEEeecc
Q 004721 422 SCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFI 457 (733)
Q Consensus 422 ENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~ 457 (733)
-|-..++...++.|++++|+||+.. ++.+.++|-.
T Consensus 41 ~nQ~~sI~~QL~~GvR~LdLdv~~~-~~~l~v~Hg~ 75 (267)
T cd08590 41 PNQELSITDQLDLGARFLELDVHWT-TGDLRLCHGG 75 (267)
T ss_pred cccCcCHHHHHhhCCcEEEEeeeeC-CCCEEEEccC
Confidence 4666688999999999999999985 4667788864
No 188
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=42.94 E-value=3.9e+02 Score=27.43 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.0
Q ss_pred CchHHHHHHHHHCCCCeeecCcee
Q 004721 422 SCTNLAYQKAISDGVDFIDCPVQM 445 (733)
Q Consensus 422 ENTl~Af~~A~~~Gad~iE~DV~l 445 (733)
|++....+...+.|||+||+|+-.
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPf 37 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPF 37 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC
Confidence 567777777778899999999733
No 189
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=41.35 E-value=22 Score=42.49 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=33.9
Q ss_pred chHHHHHHHHHCCCCeeecCcee--ecCCeEEEeeccccc
Q 004721 423 CTNLAYQKAISDGVDFIDCPVQM--SKDGVPFCLSFINLI 460 (733)
Q Consensus 423 NTl~Af~~A~~~Gad~iE~DV~l--TkDgv~Vv~HD~~L~ 460 (733)
.+.+-|++++-.||..||+|.|= ++|++|||.|-.+.-
T Consensus 342 sSvEmYRQvLLsGcRCVELDcWdgk~~d~EPvITHG~tm~ 381 (1189)
T KOG1265|consen 342 SSVEMYRQVLLSGCRCVELDCWDGKGEDEEPVITHGFTMT 381 (1189)
T ss_pred chHHHHHHHHHhcCceEEeeeecCCCCCCCceeecccchh
Confidence 48999999999999999999995 678899999998753
No 190
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=39.94 E-value=33 Score=35.69 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=27.9
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~ 384 (733)
-++++.||+.|+-..+|.+|. ++.++|.+.| +|.|+..-
T Consensus 140 Vemi~~A~~~gl~T~~yvf~~-------------e~A~~M~~AG---aDiiv~H~ 178 (268)
T PF09370_consen 140 VEMIRKAHEKGLFTTAYVFNE-------------EQARAMAEAG---ADIIVAHM 178 (268)
T ss_dssp HHHHHHHHHTT-EE--EE-SH-------------HHHHHHHHHT----SEEEEE-
T ss_pred HHHHHHHHHCCCeeeeeecCH-------------HHHHHHHHcC---CCEEEecC
Confidence 369999999999999999863 7889999999 88776543
No 191
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=39.49 E-value=1.6e+02 Score=30.70 Aligned_cols=190 Identities=14% Similarity=0.045 Sum_probs=93.0
Q ss_pred ccccHHHHHHhh-CCCceEeeccCchhhhh--cCCcHHHHHHHHHhhcCCceecc-----C---CHHHHHHHHHhcCCCc
Q 004721 204 QILTVQDMARQI-KPPGLWLNIQHDAFYAQ--HNLSMRSFVLSVSRSVVVNYISS-----P---EVNFLRSIAARFRPSM 272 (733)
Q Consensus 204 ~iptL~e~l~~~-~~~~l~iEiK~~~~~~~--~~~~~~~~v~~~l~~~~~~~i~S-----F---~~~~l~~l~~~~p~~~ 272 (733)
+...|.+.|... .+..++-|+|....... ....-...+.....+.|...||- | +.+.|..+++.. +
T Consensus 33 ~~~~f~~aL~~~~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~---~ 109 (254)
T PF00218_consen 33 PPRSFKEALRQNEGRISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAV---D 109 (254)
T ss_dssp -TTHHHHHHHSHTSS-EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHS---S
T ss_pred CCCCHHHHHhcCCCCCeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHh---C
Confidence 557888988884 45789999994332211 11112345566677777642221 2 245566666654 2
Q ss_pred ccchhhhcCCCccCCCCCcchhHHHhhHHHH-HhhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCC
Q 004721 273 TKLVFRFLGKSEIEPTTNQTYGSLLKNLTFI-KTFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFAND 351 (733)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~ 351 (733)
.|+.. .+.+.. .| .+.+. ...|+.+..-...+-+. .-.++++.||..|+.+.+=.-+
T Consensus 110 ~PvL~----KDFIid----~~-----QI~eA~~~GADaVLLI~~~L~~~-------~l~~l~~~a~~lGle~lVEVh~-- 167 (254)
T PF00218_consen 110 LPVLR----KDFIID----PY-----QIYEARAAGADAVLLIAAILSDD-------QLEELLELAHSLGLEALVEVHN-- 167 (254)
T ss_dssp S-EEE----ES---S----HH-----HHHHHHHTT-SEEEEEGGGSGHH-------HHHHHHHHHHHTT-EEEEEESS--
T ss_pred CCccc----ccCCCC----HH-----HHHHHHHcCCCEeehhHHhCCHH-------HHHHHHHHHHHcCCCeEEEECC--
Confidence 34432 121110 01 11111 12355543322222111 0157999999999999987643
Q ss_pred CCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC--ccccchhccccCCCCCcCCcceEEecCCCCCCCCCchHHHHH
Q 004721 352 IPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT--PSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQ 429 (733)
Q Consensus 352 ~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~--~~~~l~~~~~~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~ 429 (733)
.+|+++.++.| .+-|--|+=++ +.--++....+.+ ...+..++|+--|-+ |.+-..
T Consensus 168 -----------~~El~~al~~~---a~iiGINnRdL~tf~vd~~~~~~l~~--~ip~~~~~iseSGI~------~~~d~~ 225 (254)
T PF00218_consen 168 -----------EEELERALEAG---ADIIGINNRDLKTFEVDLNRTEELAP--LIPKDVIVISESGIK------TPEDAR 225 (254)
T ss_dssp -----------HHHHHHHHHTT----SEEEEESBCTTTCCBHTHHHHHHHC--HSHTTSEEEEESS-S------SHHHHH
T ss_pred -----------HHHHHHHHHcC---CCEEEEeCccccCcccChHHHHHHHh--hCccceeEEeecCCC------CHHHHH
Confidence 38899999999 99887776443 2111122211111 111236778777653 333444
Q ss_pred HHHHCCCCeee
Q 004721 430 KAISDGVDFID 440 (733)
Q Consensus 430 ~A~~~Gad~iE 440 (733)
+..+.|+|++=
T Consensus 226 ~l~~~G~davL 236 (254)
T PF00218_consen 226 RLARAGADAVL 236 (254)
T ss_dssp HHCTTT-SEEE
T ss_pred HHHHCCCCEEE
Confidence 55567877653
No 192
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=39.34 E-value=33 Score=36.05 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=37.0
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
+++|+.|++.|..|..|.-....--...+.....+.+.++-++| |.||=+|+-+.
T Consensus 76 ~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~G---v~GvKidF~~~ 130 (273)
T PF10566_consen 76 PELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWG---VKGVKIDFMDR 130 (273)
T ss_dssp HHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCT---EEEEEEE--SS
T ss_pred HHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcC---CCEEeeCcCCC
Confidence 78999999999999999865430000001111247788999999 99999999776
No 193
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=39.33 E-value=1.5e+02 Score=28.85 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=36.3
Q ss_pred chHHHHHHHHCCCcEEEEe--cCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 647 ATDIVQRLQSFKLPVYVET--FSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wT--vn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
-++.++.++++|+.|++.. ++-- +.|.+ .+.-.....+.|||||-.+.......+
T Consensus 37 ik~ivk~lK~~gK~vfiHvDLv~Gl--------~~~e~-~i~fi~~~~~pdGIISTk~~~i~~Akk 93 (181)
T COG1954 37 IKEIVKKLKNRGKTVFIHVDLVEGL--------SNDEV-AIEFIKEVIKPDGIISTKSNVIKKAKK 93 (181)
T ss_pred HHHHHHHHHhCCcEEEEEeHHhccc--------CCchH-HHHHHHHhccCCeeEEccHHHHHHHHH
Confidence 4788999999999998872 1111 11222 233333345599999999998877654
No 194
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=39.05 E-value=1.4e+02 Score=31.35 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEE
Q 004721 331 TIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVL 381 (733)
Q Consensus 331 ~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIi 381 (733)
+-+++++++|++|.+-.++.- ......+-.+.++.+..+| ||||=
T Consensus 172 dav~r~rkrgIkvc~HiI~GL---PgE~~~~mleTak~v~~~~---v~GIK 216 (312)
T COG1242 172 DAVKRLRKRGIKVCTHLINGL---PGETRDEMLETAKIVAELG---VDGIK 216 (312)
T ss_pred HHHHHHHHcCCeEEEEEeeCC---CCCCHHHHHHHHHHHHhcC---CceEE
Confidence 478899999999999998852 1111112345667777788 99984
No 195
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=38.95 E-value=4e+02 Score=32.09 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=54.3
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCcccc--chhccccCCCCCcCCc
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAA--VDCFAHLGKNASKSAN 407 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~--l~~~~~~~~~~~~~~~ 407 (733)
.++++.+++.||++.+=.=+ .+|+++.++.| ++.|--|+=++-.-- ++...++.+.- ...
T Consensus 150 ~~l~~~a~~lGme~LvEvh~-------------~~el~~a~~~g---a~iiGINnRdL~tf~vd~~~t~~L~~~i--p~~ 211 (695)
T PRK13802 150 KHLLDLAHELGMTVLVETHT-------------REEIERAIAAG---AKVIGINARNLKDLKVDVNKYNELAADL--PDD 211 (695)
T ss_pred HHHHHHHHHcCCeEEEEeCC-------------HHHHHHHHhCC---CCEEEEeCCCCccceeCHHHHHHHHhhC--CCC
Confidence 57999999999999987633 38999999999 999866654432111 12222221111 123
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeee
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFID 440 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE 440 (733)
..+|+--|-+ |.+-.+...+.|+|.+=
T Consensus 212 ~~~VsESGI~------~~~d~~~l~~~G~davL 238 (695)
T PRK13802 212 VIKVAESGVF------GAVEVEDYARAGADAVL 238 (695)
T ss_pred cEEEEcCCCC------CHHHHHHHHHCCCCEEE
Confidence 4567666543 34445666678887653
No 196
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.47 E-value=2.6e+02 Score=28.07 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeCCHHH---HHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccc
Q 004721 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSV---LMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVY 637 (733)
Q Consensus 562 ~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~---L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~ 637 (733)
...+.+.+-+.|+. -+-|..-++.. ++.+++. |++.++.-+ +- + .++++.. +....+.++
T Consensus 22 a~~~~~al~~~Gi~-----~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT---Vl--~---~~~a~~a---~~aGA~Fiv 85 (204)
T TIGR01182 22 ALPLAKALIEGGLR-----VLEVTLRTPVALDAIRLLRKEVPDALIGAGT---VL--N---PEQLRQA---VDAGAQFIV 85 (204)
T ss_pred HHHHHHHHHHcCCC-----EEEEeCCCccHHHHHHHHHHHCCCCEEEEEe---CC--C---HHHHHHH---HHcCCCEEE
Confidence 34567888888876 44455445555 4455554 655444322 11 1 2222222 111233333
Q ss_pred cCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHH---HHHHHhhcc
Q 004721 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTA---ARYRSKLVR 714 (733)
Q Consensus 638 ~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~---~~~l~~~~~ 714 (733)
.. ..++++++.++++|+.+.. .+-++. |+...+ ++|.|.|= =||... ..|++....
T Consensus 86 sP-----~~~~~v~~~~~~~~i~~iP-G~~Tpt-------------Ei~~A~-~~Ga~~vK-lFPA~~~GG~~yikal~~ 144 (204)
T TIGR01182 86 SP-----GLTPELAKHAQDHGIPIIP-GVATPS-------------EIMLAL-ELGITALK-LFPAEVSGGVKMLKALAG 144 (204)
T ss_pred CC-----CCCHHHHHHHHHcCCcEEC-CCCCHH-------------HHHHHH-HCCCCEEE-ECCchhcCCHHHHHHHhc
Confidence 21 1258999999999999887 444454 788886 99998653 355442 355555443
Q ss_pred c
Q 004721 715 K 715 (733)
Q Consensus 715 ~ 715 (733)
.
T Consensus 145 p 145 (204)
T TIGR01182 145 P 145 (204)
T ss_pred c
Confidence 3
No 197
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=37.54 E-value=2.9e+02 Score=28.61 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=77.1
Q ss_pred cHHHHHHhhCCCceEeeccC--chhhhh-cCCcHHHHHHHHHhhcCCcee--------ccCCHHHHHHHHHhcCCCcccc
Q 004721 207 TVQDMARQIKPPGLWLNIQH--DAFYAQ-HNLSMRSFVLSVSRSVVVNYI--------SSPEVNFLRSIAARFRPSMTKL 275 (733)
Q Consensus 207 tL~e~l~~~~~~~l~iEiK~--~~~~~~-~~~~~~~~v~~~l~~~~~~~i--------~SF~~~~l~~l~~~~p~~~~~~ 275 (733)
.|.++|.. ....+..|+|. |....- ...+. ..+.....+.|...| -..+.+.|+.+++.. +.|+
T Consensus 31 ~~~~~l~~-~~~~vIaEiKr~SPs~G~i~~~~d~-~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v---~~Pv 105 (247)
T PRK13957 31 PLRDSLKS-RSFSIIAECKRKSPSAGELRADYHP-VQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSEL---KIPV 105 (247)
T ss_pred hHHHHHhC-CCCeEEEEEecCCCCCCCcCCCCCH-HHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhc---CCCE
Confidence 35666541 23788899994 331110 11122 344555666776422 235678888888875 3454
Q ss_pred hhhhcCCCccCCCCCcchhHHHhhHHHHH-hhcccccCCccccccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCc
Q 004721 276 VFRFLGKSEIEPTTNQTYGSLLKNLTFIK-TFASGILVPKDYIWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPI 354 (733)
Q Consensus 276 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~ 354 (733)
.. .+.+.. .| .+.+.. ..|+.+..-...+.+. .-.++++.|++.|+++.+=.-+
T Consensus 106 L~----KDFIid----~~-----QI~ea~~~GADavLLI~~~L~~~-------~l~~l~~~a~~lGle~LVEVh~----- 160 (247)
T PRK13957 106 LR----KDFILD----EI-----QIREARAFGASAILLIVRILTPS-------QIKSFLKHASSLGMDVLVEVHT----- 160 (247)
T ss_pred Ee----ccccCC----HH-----HHHHHHHcCCCEEEeEHhhCCHH-------HHHHHHHHHHHcCCceEEEECC-----
Confidence 42 111100 00 111111 1245543222221110 1257999999999999987633
Q ss_pred ccCCCCChHHHHHHHHhcCCcccceEEecCCCC
Q 004721 355 SFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 355 ~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~ 387 (733)
.+|+++.++.| ++.|--|+=++
T Consensus 161 --------~~El~~a~~~g---a~iiGINnRdL 182 (247)
T PRK13957 161 --------EDEAKLALDCG---AEIIGINTRDL 182 (247)
T ss_pred --------HHHHHHHHhCC---CCEEEEeCCCC
Confidence 38899999999 99988887554
No 198
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=37.50 E-value=1.5e+02 Score=33.97 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccccccCCCccCCCCChHHHHHH
Q 004721 257 EVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVLDA 336 (733)
Q Consensus 257 ~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~~a 336 (733)
.++.|+.+++..| ++++..++-+.+.+.. ..|.+-......-.+...|+....-+..-.+..+. ...++.+
T Consensus 63 pwerlr~lr~~~~--nt~lqmL~Rg~N~vGy---~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl----~~ai~~v 133 (499)
T PRK12330 63 PWERLRTFRKLMP--NSRLQMLLRGQNLLGY---RHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNL----EHAMKAV 133 (499)
T ss_pred HHHHHHHHHHhCC--CCeEEEEEcccccCCc---cCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHH----HHHHHHH
Q ss_pred HHcCCeE---EEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceE-Eec-----CCCCccccchhccccCCCCCcCCc
Q 004721 337 HKERLEV---FASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGV-LSD-----FPLTPSAAVDCFAHLGKNASKSAN 407 (733)
Q Consensus 337 h~~Gl~V---~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgI-iTD-----~P~~~~~~l~~~~~~~~~~~~~~~ 407 (733)
+++|..+ .++|+.......+- .+..+++.++| +|.| |.| .|..+.+.++... ....+.
T Consensus 134 k~ag~~~~~~i~yt~sp~~t~e~~-----~~~a~~l~~~G---ad~I~IkDtaGll~P~~~~~LV~~Lk-----~~~~~~ 200 (499)
T PRK12330 134 KKVGKHAQGTICYTVSPIHTVEGF-----VEQAKRLLDMG---ADSICIKDMAALLKPQPAYDIVKGIK-----EACGED 200 (499)
T ss_pred HHhCCeEEEEEEEecCCCCCHHHH-----HHHHHHHHHcC---CCEEEeCCCccCCCHHHHHHHHHHHH-----HhCCCC
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCc
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPV 443 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV 443 (733)
.-|--|- -.-....++...+|++.|||.|++-|
T Consensus 201 ipI~~H~---Hnt~GlA~An~laAieAGad~vDtai 233 (499)
T PRK12330 201 TRINLHC---HSTTGVTLVSLMKAIEAGVDVVDTAI 233 (499)
T ss_pred CeEEEEe---CCCCCcHHHHHHHHHHcCCCEEEeec
No 199
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=37.27 E-value=27 Score=37.51 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=16.8
Q ss_pred hHHHHHHHHcCCeEEEee
Q 004721 330 TTIVLDAHKERLEVFASN 347 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WT 347 (733)
..+|++||++||+||+|.
T Consensus 73 ~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 469999999999999998
No 200
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=37.02 E-value=87 Score=32.35 Aligned_cols=136 Identities=17% Similarity=0.194 Sum_probs=65.6
Q ss_pred HHHHHHHhhcCCceecc-CCHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCcccc
Q 004721 239 SFVLSVSRSVVVNYISS-PEVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDYI 317 (733)
Q Consensus 239 ~~v~~~l~~~~~~~i~S-F~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~i 317 (733)
..+.+..++.|+.+++| |+.+.+..+.+...+ -+++. ++-
T Consensus 59 ~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~-~~KIa-------------------------------S~d------- 99 (241)
T PF03102_consen 59 KELFEYCKELGIDFFSTPFDEESVDFLEELGVP-AYKIA-------------------------------SGD------- 99 (241)
T ss_dssp HHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-S-EEEE--------------------------------GGG-------
T ss_pred HHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCC-EEEec-------------------------------ccc-------
Confidence 45677888889986555 999999998776431 11111 000
Q ss_pred ccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHH----hcCCcccceE----EecCCCCcc
Q 004721 318 WPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFI----DNGDFSVDGV----LSDFPLTPS 389 (733)
Q Consensus 318 ~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~----~~G~~~VDgI----iTD~P~~~~ 389 (733)
..+..+++.+-+.|+.|..-|=- ...+|+++.+ +.| ..+-+ ++.||...-
T Consensus 100 ---------l~n~~lL~~~A~tgkPvIlSTG~-----------stl~EI~~Av~~~~~~~--~~~l~llHC~s~YP~~~e 157 (241)
T PF03102_consen 100 ---------LTNLPLLEYIAKTGKPVILSTGM-----------STLEEIERAVEVLREAG--NEDLVLLHCVSSYPTPPE 157 (241)
T ss_dssp ---------TT-HHHHHHHHTT-S-EEEE-TT-------------HHHHHHHHHHHHHHC--T--EEEEEE-SSSS--GG
T ss_pred ---------ccCHHHHHHHHHhCCcEEEECCC-----------CCHHHHHHHHHHHHhcC--CCCEEEEecCCCCCCChH
Confidence 01245888888999999988832 2334444433 333 13333 356776543
Q ss_pred cc-chhccccCCCCCcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCcee
Q 004721 390 AA-VDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQM 445 (733)
Q Consensus 390 ~~-l~~~~~~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~l 445 (733)
++ ++.+..+. ..-+..| |+|.....++. +. .|+.+||.+||-=+.+
T Consensus 158 ~~NL~~i~~L~-----~~f~~~v---G~SDHt~g~~~-~~-~AvalGA~vIEKHfTl 204 (241)
T PF03102_consen 158 DVNLRVIPTLK-----ERFGVPV---GYSDHTDGIEA-PI-AAVALGARVIEKHFTL 204 (241)
T ss_dssp G--TTHHHHHH-----HHSTSEE---EEEE-SSSSHH-HH-HHHHTT-SEEEEEB-S
T ss_pred HcChHHHHHHH-----HhcCCCE---EeCCCCCCcHH-HH-HHHHcCCeEEEEEEEC
Confidence 32 11111110 0112344 77776665444 33 7888999999964433
No 201
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=36.61 E-value=5.6e+02 Score=27.81 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCceecc-CCHHHHHHHHHh-cCCCcccchhhhcCCCccCCCCCcchhHHHhhHHHHHhhcccccCCccc
Q 004721 239 SFVLSVSRSVVVNYISS-PEVNFLRSIAAR-FRPSMTKLVFRFLGKSEIEPTTNQTYGSLLKNLTFIKTFASGILVPKDY 316 (733)
Q Consensus 239 ~~v~~~l~~~~~~~i~S-F~~~~l~~l~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~ 316 (733)
+.+.+.-++.|+.+++| ||...+..+.+. .| -.++.
T Consensus 79 ~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~--~~KIa---------------------------------------- 116 (329)
T TIGR03569 79 RELKEYCESKGIEFLSTPFDLESADFLEDLGVP--RFKIP---------------------------------------- 116 (329)
T ss_pred HHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCC--EEEEC----------------------------------------
Q ss_pred cccCCCccCCCCChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhc----CCcccc---eEE----ecCC
Q 004721 317 IWPVDESLYLLPHTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDN----GDFSVD---GVL----SDFP 385 (733)
Q Consensus 317 i~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~----G~~~VD---gIi----TD~P 385 (733)
..-..+..+++.+-+.|+.|..-| +....+|+...++. | .+ -++ +.||
T Consensus 117 -------S~~~~n~pLL~~~A~~gkPvilSt-----------Gmatl~Ei~~Av~~i~~~G---~~~~~i~llhC~s~YP 175 (329)
T TIGR03569 117 -------SGEITNAPLLKKIARFGKPVILST-----------GMATLEEIEAAVGVLRDAG---TPDSNITLLHCTTEYP 175 (329)
T ss_pred -------cccccCHHHHHHHHhcCCcEEEEC-----------CCCCHHHHHHHHHHHHHcC---CCcCcEEEEEECCCCC
Q ss_pred CCcccc-chhccccCCCCCcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeeccccccccc
Q 004721 386 LTPSAA-VDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLINSTN 464 (733)
Q Consensus 386 ~~~~~~-l~~~~~~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~rtt~ 464 (733)
.....+ +..+..++ ..-+-+.-...|=.+ ..+=..|+.+||++|| .| .+++|...
T Consensus 176 ~~~~~~nL~~I~~Lk--~~f~~pVG~SdHt~G--------~~~~~aAvalGA~iIE-------------kH-~tldk~~~ 231 (329)
T TIGR03569 176 APFEDVNLNAMDTLK--EAFDLPVGYSDHTLG--------IEAPIAAVALGATVIE-------------KH-FTLDKNLP 231 (329)
T ss_pred CCcccCCHHHHHHHH--HHhCCCEEECCCCcc--------HHHHHHHHHcCCCEEE-------------eC-CChhhcCC
Q ss_pred cCCCcCCCcccccccccccCcccccccCHHHHhcc
Q 004721 465 AAQSKFNSITTTIPEIMAGSGIFSFSLIWDEIQTL 499 (733)
Q Consensus 465 v~~~~~~~r~~~~~~~~~~~g~~i~d~T~~EL~~L 499 (733)
|.. ....++.+|+++|
T Consensus 232 ------------------G~D-~~~Sl~p~el~~l 247 (329)
T TIGR03569 232 ------------------GPD-HKASLEPDELKEM 247 (329)
T ss_pred ------------------CCC-hhhcCCHHHHHHH
No 202
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=36.06 E-value=1.3e+02 Score=31.98 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=57.1
Q ss_pred ChHHHHHHHHcCCeE--EEeecCC-CCCc-ccCCCCChHHHHHHHHh-cCCcccceEEecC---------CCCccccchh
Q 004721 329 HTTIVLDAHKERLEV--FASNFAN-DIPI-SFNYSYDPLTEYLSFID-NGDFSVDGVLSDF---------PLTPSAAVDC 394 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V--~~WTvn~-~~~~-~~~~~~d~~~~~~~l~~-~G~~~VDgIiTD~---------P~~~~~~l~~ 394 (733)
+.+.++.||..|+.| =.-.+.. +... .......++++..++++ .| ||.+-.-+ |.+-.+.++.
T Consensus 117 T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tg---vD~LAvaiGt~HG~Y~~p~l~~~~l~~ 193 (283)
T PRK07998 117 TKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTG---CDMLAVSIGNVHGLEDIPRIDIPLLKR 193 (283)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhC---cCeeehhccccccCCCCCCcCHHHHHH
Confidence 578999999999876 3333321 1100 00111235677788876 56 99988877 7654444444
Q ss_pred ccccCCCCCcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeee
Q 004721 395 FAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFID 440 (733)
Q Consensus 395 ~~~~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE 440 (733)
... ..+-|+++ |.|+ |.-. .-|++|++.|+.-|-
T Consensus 194 I~~------~~~vPLVl-HGgS-G~~~----e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 194 IAE------VSPVPLVI-HGGS-GIPP----EILRSFVNYKVAKVN 227 (283)
T ss_pred HHh------hCCCCEEE-eCCC-CCCH----HHHHHHHHcCCcEEE
Confidence 432 12456555 7665 4332 447999999986553
No 203
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.58 E-value=2.2e+02 Score=32.39 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=79.8
Q ss_pred CHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhH-HHh-hHHHHHhhcccccCCccccccCCCccCCCCChHHHH
Q 004721 257 EVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS-LLK-NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVL 334 (733)
Q Consensus 257 ~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~ 334 (733)
.|+-|+.+++..| ++++..++.+.+.+.. ..|.+ +.. -++.. ...|+.... +.. .-+....-...++
T Consensus 71 pwerlr~~r~~~~--nt~lqmLlRG~n~vgy---~~ypddvv~~fv~~a--~~~Gidi~R--ifd--~lnd~~n~~~ai~ 139 (468)
T PRK12581 71 PWERLRTLKKGLP--NTRLQMLLRGQNLLGY---RHYADDIVDKFISLS--AQNGIDVFR--IFD--ALNDPRNIQQALR 139 (468)
T ss_pred HHHHHHHHHHhCC--CCceeeeeccccccCc---cCCcchHHHHHHHHH--HHCCCCEEE--Ecc--cCCCHHHHHHHHH
Confidence 4678999999998 7777764544332211 11211 111 11111 223332211 110 0011111256889
Q ss_pred HHHHcCCeE---EEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEe-c-----CCCCccccchhccccCCCCCcC
Q 004721 335 DAHKERLEV---FASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLS-D-----FPLTPSAAVDCFAHLGKNASKS 405 (733)
Q Consensus 335 ~ah~~Gl~V---~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiT-D-----~P~~~~~~l~~~~~~~~~~~~~ 405 (733)
.+++.|..+ .++|..... ...| -.+..+++.+.| +|.|.- | .|..+.+.++...+..
T Consensus 140 ~ak~~G~~~~~~i~yt~sp~~--t~~y---~~~~a~~l~~~G---ad~I~IkDtaG~l~P~~v~~Lv~alk~~~------ 205 (468)
T PRK12581 140 AVKKTGKEAQLCIAYTTSPVH--TLNY---YLSLVKELVEMG---ADSICIKDMAGILTPKAAKELVSGIKAMT------ 205 (468)
T ss_pred HHHHcCCEEEEEEEEEeCCcC--cHHH---HHHHHHHHHHcC---CCEEEECCCCCCcCHHHHHHHHHHHHhcc------
Confidence 999999985 455553321 0000 124567788889 998753 4 4555556665553211
Q ss_pred CcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCce
Q 004721 406 ANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQ 444 (733)
Q Consensus 406 ~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~ 444 (733)
.-| |--|-= .-....++....|++.||+.|++-+.
T Consensus 206 ~~p-i~~H~H---nt~GlA~An~laAieAGad~vD~ai~ 240 (468)
T PRK12581 206 NLP-LIVHTH---ATSGISQMTYLAAVEAGADRIDTALS 240 (468)
T ss_pred CCe-EEEEeC---CCCccHHHHHHHHHHcCCCEEEeecc
Confidence 112 333421 12333444445557899999877664
No 204
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=33.00 E-value=42 Score=34.91 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=28.7
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCC
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF 701 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~ 701 (733)
-++++.+|+.|+-..+|.+|.+ +..++. +.|+|.|+..-
T Consensus 140 Vemi~~A~~~gl~T~~yvf~~e--------------~A~~M~-~AGaDiiv~H~ 178 (268)
T PF09370_consen 140 VEMIRKAHEKGLFTTAYVFNEE--------------QARAMA-EAGADIIVAHM 178 (268)
T ss_dssp HHHHHHHHHTT-EE--EE-SHH--------------HHHHHH-HHT-SEEEEE-
T ss_pred HHHHHHHHHCCCeeeeeecCHH--------------HHHHHH-HcCCCEEEecC
Confidence 5789999999999999999766 688886 99999998765
No 205
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=32.61 E-value=1.4e+02 Score=30.29 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=52.4
Q ss_pred hHHHHHHHHc-CCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC-----CCCccccchhccccCC-CC
Q 004721 330 TTIVLDAHKE-RLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF-----PLTPSAAVDCFAHLGK-NA 402 (733)
Q Consensus 330 ~~~v~~ah~~-Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~-----P~~~~~~l~~~~~~~~-~~ 402 (733)
.++++++.+. ++.|.+.. +..+.++++++++.| +|.|+... |+.+.++.+.+....- -+
T Consensus 62 ~~~i~~i~~~~~~pv~~~G-----------gI~~~e~~~~~~~~G---ad~vvigs~~l~dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 62 LELIEEIVKAVGIPVQVGG-----------GIRSLEDIERLLDLG---VSRVIIGTAAVKNPELVKELLKEYGGERIVVG 127 (234)
T ss_pred HHHHHHHHHhcCCCEEEeC-----------CcCCHHHHHHHHHcC---CCEEEECchHHhChHHHHHHHHHcCCceEEEE
Confidence 4567766554 55555532 133458899999999 99998764 4445555544421000 00
Q ss_pred CcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCee
Q 004721 403 SKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (733)
Q Consensus 403 ~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~i 439 (733)
..-+.- .+..||.....+.++....+...+.|++.+
T Consensus 128 id~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ga~~i 163 (234)
T cd04732 128 LDAKDG-KVATKGWLETSEVSLEELAKRFEELGVKAI 163 (234)
T ss_pred EEeeCC-EEEECCCeeecCCCHHHHHHHHHHcCCCEE
Confidence 000000 112345444456677777777778899766
No 206
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=32.42 E-value=5.5e+02 Score=26.05 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=30.8
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
...++.+|+.|+.+.+=.+|+.+ |.. ..++++++|+|.++--+.
T Consensus 96 ~~~i~~A~~~~~~v~iDl~~~~~----------~~~-~~~~l~~~gvd~~~~H~g 139 (217)
T COG0269 96 KKAIKVAKEYGKEVQIDLIGVWD----------PEQ-RAKWLKELGVDQVILHRG 139 (217)
T ss_pred HHHHHHHHHcCCeEEEEeecCCC----------HHH-HHHHHHHhCCCEEEEEec
Confidence 56788889999888888777763 443 444544589988876543
No 207
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=32.29 E-value=59 Score=35.20 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=31.6
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPL 386 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~ 386 (733)
+++++++|+.|+.|++ +|.+ .++.+++.+.| +|+|+.--++
T Consensus 126 ~~~i~~l~~~gi~v~~-~v~s------------~~~A~~a~~~G---~D~iv~qG~e 166 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIP-QVTS------------VREARKAAKAG---ADAIVAQGPE 166 (330)
T ss_dssp HHHHHHHHHTT-EEEE-EESS------------HHHHHHHHHTT----SEEEEE-TT
T ss_pred HHHHHHHHHcCCcccc-ccCC------------HHHHHHhhhcC---CCEEEEeccc
Confidence 7899999999998876 5544 47899999999 9999976544
No 208
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=31.53 E-value=1.2e+02 Score=33.10 Aligned_cols=63 Identities=16% Similarity=0.044 Sum_probs=38.5
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHHhhcccc
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRSKLVRKQ 716 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~~~~~~~ 716 (733)
.+.++.+|++|.++++= +|..-.. -..+...++.+.+.+.|||+||-.+|..+. ++++.+++.
T Consensus 52 ~e~i~~ah~~gkk~~V~-~N~~~~~----~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~-l~~e~~p~l 114 (347)
T COG0826 52 AEAVELAHSAGKKVYVA-VNTLLHN----DELETLERYLDRLVELGVDAVIVADPGLIM-LARERGPDL 114 (347)
T ss_pred HHHHHHHHHcCCeEEEE-ecccccc----chhhHHHHHHHHHHHcCCCEEEEcCHHHHH-HHHHhCCCC
Confidence 67899999999988764 3433100 000111233344459999999999997654 445555443
No 209
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.53 E-value=6e+02 Score=27.09 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=74.5
Q ss_pred EEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCC-HHHHHHHHhc---cCceEEEEeecccchhhhHH
Q 004721 543 VLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD-SSVLMKLREK---TSYELVYKVKENIRDALNQT 618 (733)
Q Consensus 543 l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd-~~~L~~lk~~---p~~~~~~l~~~~~~~~~~~~ 618 (733)
-+.||..|.... + =.++|.+.+...+...+.+-.+|. .+..+.|... ++.|+.++.++-...+++..
T Consensus 117 ~vfEvD~Pevi~------~---K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~ 187 (297)
T COG3315 117 RVFEVDLPEVIE------F---KKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEA 187 (297)
T ss_pred eEEECCCcHHHH------H---HHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHH
Confidence 567887765321 1 134566666554433577777887 7888888864 88999999887544444544
Q ss_pred HHHHHHHHhHhcCCCcccccCCccccccchHHHHHH--HHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCE
Q 004721 619 IEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRL--QSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDG 696 (733)
Q Consensus 619 l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~--~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdg 696 (733)
.+.+-.+.....++.+.+..... ......... +..+....-+.++..+ ..|+.+...++..++.+.|...
T Consensus 188 v~~ll~~I~~~~~~gS~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~~~~~~~e~~~~l~~~g~~~ 259 (297)
T COG3315 188 VDRLLSRIAALSAPGSRVAFDYS----LPGSLRDRLRRPAARKTMRGEDLDRGE----LVYFGDDPAEIETWLAERGWRS 259 (297)
T ss_pred HHHHHHHHHHhCCCCceEEEecc----ccHHHHhcccchhhhhhcccccccccc----ceeccCCHHHHHHHHHhcCEEE
Confidence 44443333333333333332210 112222222 2223333222222221 2233332337888888888887
Q ss_pred EEeC
Q 004721 697 VITE 700 (733)
Q Consensus 697 IiTD 700 (733)
....
T Consensus 260 ~~~~ 263 (297)
T COG3315 260 TLNR 263 (297)
T ss_pred EecC
Confidence 7774
No 210
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=31.34 E-value=66 Score=33.44 Aligned_cols=39 Identities=26% Similarity=0.207 Sum_probs=33.6
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
..+++.+|+.|++|.+..|.++ ++.+.+.++| ||.+-=.
T Consensus 196 ~~iv~la~~l~~~vvaEGVEt~------------~ql~~L~~~G---~~~~QGy 234 (256)
T COG2200 196 RAIVALAHKLGLTVVAEGVETE------------EQLDLLRELG---CDYLQGY 234 (256)
T ss_pred HHHHHHHHHCCCEEEEeecCCH------------HHHHHHHHcC---CCeEeec
Confidence 5699999999999999999775 8899999999 8876554
No 211
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=30.22 E-value=3.9e+02 Score=29.14 Aligned_cols=70 Identities=21% Similarity=0.115 Sum_probs=44.6
Q ss_pred HHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC-CCCccccchhccccCCCCCcCCcceE
Q 004721 332 IVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF-PLTPSAAVDCFAHLGKNASKSANLLV 410 (733)
Q Consensus 332 ~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~-P~~~~~~l~~~~~~~~~~~~~~~~~i 410 (733)
-|+.|+..|.+|.+.|.+++ ..+...++| .|-+++-. ++.+..+.+. .+ .+
T Consensus 182 avQ~Aka~ga~Via~~~~~~-------------K~e~a~~lG---Ad~~i~~~~~~~~~~~~~~-~d-----------~i 233 (339)
T COG1064 182 AVQYAKAMGAEVIAITRSEE-------------KLELAKKLG---ADHVINSSDSDALEAVKEI-AD-----------AI 233 (339)
T ss_pred HHHHHHHcCCeEEEEeCChH-------------HHHHHHHhC---CcEEEEcCCchhhHHhHhh-Cc-----------EE
Confidence 78899999999999998753 345566778 99998855 4443333221 11 12
Q ss_pred EecCCCCCCCCCchHHHHHHHHHCC
Q 004721 411 ISKNGASGDYPSCTNLAYQKAISDG 435 (733)
Q Consensus 411 IaHRG~~~~~PENTl~Af~~A~~~G 435 (733)
| ...++.|+..+-++++.|
T Consensus 234 i------~tv~~~~~~~~l~~l~~~ 252 (339)
T COG1064 234 I------DTVGPATLEPSLKALRRG 252 (339)
T ss_pred E------ECCChhhHHHHHHHHhcC
Confidence 2 124467777777777644
No 212
>PRK11059 regulatory protein CsrD; Provisional
Probab=30.15 E-value=3.1e+02 Score=32.59 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCC--HHHHHHHHhc-cCceE
Q 004721 527 LSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTD--SSVLMKLREK-TSYEL 603 (733)
Q Consensus 527 LeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd--~~~L~~lk~~-p~~~~ 603 (733)
|.+.+...+..... .+.+||-......+ ......+++.+++.|+ ++.+--|. ...+.+++.+ +++--
T Consensus 504 l~~~l~~~~~~~~~-~l~~Ei~E~~~~~~---~~~~~~~l~~L~~~G~------~iaiddfG~g~~s~~~L~~l~~d~iK 573 (640)
T PRK11059 504 LRDTLLQCPRSQRK-RLIFELAEADVCQH---ISRLRPVLRMLRGLGC------RLAVDQAGLTVVSTSYIKELNVELIK 573 (640)
T ss_pred HHHHHHhcCCCCcc-eEEEEEechhhhcC---HHHHHHHHHHHHHCCC------EEEEECCCCCcccHHHHHhCCCCEEE
Q ss_pred EEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHH
Q 004721 604 VYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTV 683 (733)
Q Consensus 604 ~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~ 683 (733)
. +...+..+..- .....+. ..++..+|..|++|.+=.|.+++
T Consensus 574 i----------d~s~v~~i~~~------~~~~~~v---------~sli~~a~~~~i~viAegVEt~~------------- 615 (640)
T PRK11059 574 L----------HPSLVRNIHKR------TENQLFV---------RSLVGACAGTETQVFATGVESRE------------- 615 (640)
T ss_pred E----------CHHHHhhhhcC------chhHHHH---------HHHHHHHHHCCCeEEEEEeCCHH-------------
Q ss_pred HHHHHHhhcCcCEEE
Q 004721 684 EINTYYEGAGIDGVI 698 (733)
Q Consensus 684 e~~~~l~~~GVdgIi 698 (733)
++..+. ++|||++.
T Consensus 616 ~~~~l~-~lGvd~~Q 629 (640)
T PRK11059 616 EWQTLQ-ELGVSGGQ 629 (640)
T ss_pred HHHHHH-HhCCCeee
No 213
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=29.72 E-value=1.9e+02 Score=29.04 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=49.1
Q ss_pred HHHHHH-HcC--CeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhccccCCCCCcCCcc
Q 004721 332 IVLDAH-KER--LEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408 (733)
Q Consensus 332 ~v~~ah-~~G--l~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~~~~~~~~~~~~~ 408 (733)
.++.+. +.+ +.|.+-||-+. ++.+..++.| +|+|++ |..-....+..... +.+
T Consensus 51 ~i~~l~~~~~~~~~iGaGTV~~~------------~~~~~a~~aG---A~fivs--p~~~~~v~~~~~~~-------~~~ 106 (206)
T PRK09140 51 SIAALVKALGDRALIGAGTVLSP------------EQVDRLADAG---GRLIVT--PNTDPEVIRRAVAL-------GMV 106 (206)
T ss_pred HHHHHHHHcCCCcEEeEEecCCH------------HHHHHHHHcC---CCEEEC--CCCCHHHHHHHHHC-------CCc
Confidence 444443 344 67899998754 7889999999 999999 44333333332211 223
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeee
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFID 440 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE 440 (733)
.+.| -+|..-..+|.+.|+|+|=
T Consensus 107 ~~~G---------~~t~~E~~~A~~~Gad~vk 129 (206)
T PRK09140 107 VMPG---------VATPTEAFAALRAGAQALK 129 (206)
T ss_pred EEcc---------cCCHHHHHHHHHcCCCEEE
Confidence 4443 3555667889999999986
No 214
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=29.66 E-value=1.1e+02 Score=31.66 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=38.0
Q ss_pred hHHHHHHHHC---CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEe------------CChHHHHHHHHh
Q 004721 648 TDIVQRLQSF---KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT------------EFPMTAARYRSK 711 (733)
Q Consensus 648 ~~~v~~~~~~---Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT------------D~P~~~~~~l~~ 711 (733)
.+.+++++.. |+.|++|+.++.. ..+++. ++|++.|++ | |+.+....+.
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~dd~~-------------~ar~l~-~~G~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~ 173 (248)
T cd04728 110 IETLKAAEILVKEGFTVLPYCTDDPV-------------LAKRLE-DAGCAAVMPLGSPIGSGQGLLN-PYNLRIIIER 173 (248)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEeCCCCcCCCCCCCCCC-HHHHHHHHHh
Confidence 4567777777 9999999999886 677774 999999988 6 7777655543
No 215
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.20 E-value=78 Score=34.14 Aligned_cols=40 Identities=8% Similarity=0.082 Sum_probs=30.9
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFP 385 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P 385 (733)
|..++++|+.|++|+ ++|.+ ..+.+++.+.| +|+||--=.
T Consensus 93 P~~~~~lk~~Gi~v~-~~v~s------------~~~A~~a~~~G---aD~vVaqG~ 132 (320)
T cd04743 93 PDQARALEAIGISTY-LHVPS------------PGLLKQFLENG---ARKFIFEGR 132 (320)
T ss_pred hHHHHHHHHCCCEEE-EEeCC------------HHHHHHHHHcC---CCEEEEecC
Confidence 345899999999998 44433 36789999999 999996543
No 216
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.73 E-value=5.2e+02 Score=26.09 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=32.5
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCCh
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFP 702 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P 702 (733)
++++++.++++|+.+..-+.+ +. |+.+.+ +.|+|.|-- ||
T Consensus 98 ~~~v~~~~~~~~i~~iPG~~T-~~-------------E~~~A~-~~Gad~vkl-FP 137 (213)
T PRK06552 98 NRETAKICNLYQIPYLPGCMT-VT-------------EIVTAL-EAGSEIVKL-FP 137 (213)
T ss_pred CHHHHHHHHHcCCCEECCcCC-HH-------------HHHHHH-HcCCCEEEE-CC
Confidence 589999999999999876554 33 788886 999999876 55
No 217
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=26.94 E-value=86 Score=32.13 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=49.8
Q ss_pred CChHHHHHHHHhcCCcccceEEecC-----CCCccccchhccccC--CCCCcCCc-c--eEEecCCCCCCCCCchHHHHH
Q 004721 360 YDPLTEYLSFIDNGDFSVDGVLSDF-----PLTPSAAVDCFAHLG--KNASKSAN-L--LVISKNGASGDYPSCTNLAYQ 429 (733)
Q Consensus 360 ~d~~~~~~~l~~~G~~~VDgIiTD~-----P~~~~~~l~~~~~~~--~~~~~~~~-~--~iIaHRG~~~~~PENTl~Af~ 429 (733)
..+.+++++++..| +|+|+... |+.+.++.+.+.... -+-....+ . .-+..||.....++.+..--+
T Consensus 80 I~s~~d~~~~l~~G---~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~ 156 (243)
T cd04731 80 IRSLEDARRLLRAG---ADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAK 156 (243)
T ss_pred CCCHHHHHHHHHcC---CceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHH
Confidence 33458899999999 99999874 555555555542110 00000111 1 346678877777788877778
Q ss_pred HHHHCCCCeeec
Q 004721 430 KAISDGVDFIDC 441 (733)
Q Consensus 430 ~A~~~Gad~iE~ 441 (733)
.+.+.|++.|.+
T Consensus 157 ~l~~~G~d~i~v 168 (243)
T cd04731 157 EVEELGAGEILL 168 (243)
T ss_pred HHHHCCCCEEEE
Confidence 888899976643
No 218
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.92 E-value=3.6e+02 Score=26.89 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeCCH---HHHHHHHhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccc
Q 004721 562 TNSVMEALGNAGYNKQTALKVMIQSTDS---SVLMKLREK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVY 637 (733)
Q Consensus 562 ~~~v~~~l~~~~~~~~~~~~vii~Sfd~---~~L~~lk~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~ 637 (733)
...+.+.+-+.|+. -+-|.--++ +.++.+++. |++.++.-+=- + .++++.. +.....+++
T Consensus 22 a~~~~~al~~gGi~-----~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~-----~---~e~a~~a---~~aGA~Fiv 85 (196)
T PF01081_consen 22 AVPIAEALIEGGIR-----AIEITLRTPNALEAIEALRKEFPDLLVGAGTVL-----T---AEQAEAA---IAAGAQFIV 85 (196)
T ss_dssp HHHHHHHHHHTT-------EEEEETTSTTHHHHHHHHHHHHTTSEEEEES-------S---HHHHHHH---HHHT-SEEE
T ss_pred HHHHHHHHHHCCCC-----EEEEecCCccHHHHHHHHHHHCCCCeeEEEecc-----C---HHHHHHH---HHcCCCEEE
Confidence 34677778788865 333443334 345555666 88766533211 1 2222221 111223333
Q ss_pred cCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHH---HHHHHhhc
Q 004721 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTA---ARYRSKLV 713 (733)
Q Consensus 638 ~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~---~~~l~~~~ 713 (733)
.. ..++++++.++++|+.+..-... +. |+.+.+ ++|++.|= =||... ..|++...
T Consensus 86 SP-----~~~~~v~~~~~~~~i~~iPG~~T-pt-------------Ei~~A~-~~G~~~vK-~FPA~~~GG~~~ik~l~ 143 (196)
T PF01081_consen 86 SP-----GFDPEVIEYAREYGIPYIPGVMT-PT-------------EIMQAL-EAGADIVK-LFPAGALGGPSYIKALR 143 (196)
T ss_dssp ES-----S--HHHHHHHHHHTSEEEEEESS-HH-------------HHHHHH-HTT-SEEE-ETTTTTTTHHHHHHHHH
T ss_pred CC-----CCCHHHHHHHHHcCCcccCCcCC-HH-------------HHHHHH-HCCCCEEE-EecchhcCcHHHHHHHh
Confidence 21 12689999999999998776543 32 788886 99998553 355543 44555443
No 219
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.77 E-value=1.3e+02 Score=31.09 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=37.6
Q ss_pred hHHHHHHHHC---CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEe------------CChHHHHHHHHh
Q 004721 648 TDIVQRLQSF---KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT------------EFPMTAARYRSK 711 (733)
Q Consensus 648 ~~~v~~~~~~---Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT------------D~P~~~~~~l~~ 711 (733)
.+.+++++.. |+.|++|+.++.. ..+++. ++|++.|.. | |+.+....+.
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~~d~~-------------~ak~l~-~~G~~~vmPlg~pIGsg~gi~~-~~~i~~i~e~ 173 (250)
T PRK00208 110 IETLKAAEILVKEGFVVLPYCTDDPV-------------LAKRLE-EAGCAAVMPLGAPIGSGLGLLN-PYNLRIIIEQ 173 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEeCCCCcCCCCCCCCCC-HHHHHHHHHh
Confidence 4567777777 9999999999886 677775 999999987 6 6665555443
No 220
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.66 E-value=64 Score=38.81 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHcCCCCcEEEeeeee--cCCCeEEEecCCCC
Q 004721 107 SSSIAYSLTLITSAPSVILWCDVQL--TKDEAGICFPDLKL 145 (733)
Q Consensus 107 NTl~af~~A~~~g~d~~~iE~DV~l--TkDg~lVv~HD~~l 145 (733)
-+.+=|+.++-.|+. .||+|+|- ++|+++|+-|-.+.
T Consensus 342 sSvEmYRQvLLsGcR--CVELDcWdgk~~d~EPvITHG~tm 380 (1189)
T KOG1265|consen 342 SSVEMYRQVLLSGCR--CVELDCWDGKGEDEEPVITHGFTM 380 (1189)
T ss_pred chHHHHHHHHHhcCc--eEEeeeecCCCCCCCceeecccch
Confidence 389999999999999 99999995 67889999999987
No 221
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=26.61 E-value=6.1e+02 Score=24.72 Aligned_cols=46 Identities=9% Similarity=-0.078 Sum_probs=29.8
Q ss_pred chHHHHHHHHCCCcEE--EEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 647 ATDIVQRLQSFKLPVY--VETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~--~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
+..-++.+++.|+.+. .|+.++.. .+. +.+.+.++ +.|..+..+++
T Consensus 157 ~~~Di~aA~~~Gi~~i~~~~g~~~~~----------------~l~-~~~~~~~~-~~~~~l~~~~~ 204 (205)
T TIGR01454 157 AVTDLASARAAGTATVAALWGEGDAG----------------ELL-AARPDFLL-RKPQSLLALCR 204 (205)
T ss_pred CHHHHHHHHHcCCeEEEEEecCCChh----------------hhh-hcCCCeee-CCHHHHHHHhh
Confidence 4567999999999864 56665442 232 66788776 44545555543
No 222
>PRK13561 putative diguanylate cyclase; Provisional
Probab=26.54 E-value=1.8e+02 Score=34.52 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=33.4
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF 384 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~ 384 (733)
..+++.||..|++|.+=.|.++ ++++.+.++| ||++.=-+
T Consensus 594 ~~i~~~a~~l~i~viAegVE~~------------~~~~~l~~~g---~d~~QG~~ 633 (651)
T PRK13561 594 AAIIMLAQSLNLQVIAEGVETE------------AQRDWLLKAG---VGIAQGFL 633 (651)
T ss_pred HHHHHHHHHCCCcEEEecCCCH------------HHHHHHHhcC---CCEEeCCc
Confidence 4588999999999999998765 8899999999 98776543
No 223
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.29 E-value=3.5e+02 Score=28.08 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHc-CCeEEEeecCCCCCcccCCCCCh----HHHHHHHHhcCCcccceEEecC--CC--Cccccchhccc
Q 004721 327 LPHTTIVLDAHKE-RLEVFASNFANDIPISFNYSYDP----LTEYLSFIDNGDFSVDGVLSDF--PL--TPSAAVDCFAH 397 (733)
Q Consensus 327 ~~~~~~v~~ah~~-Gl~V~~WTvn~~~~~~~~~~~d~----~~~~~~l~~~G~~~VDgIiTD~--P~--~~~~~l~~~~~ 397 (733)
.++..+++.+.+. .++|++-- + +....+.|+... ..+++.+.++| +|||+.=. |+ .=.+.++.+..
T Consensus 37 TPS~g~i~~~~~~~~ipv~vMI-R-PR~gdF~Ys~~E~~~M~~di~~~~~~G---adGvV~G~L~~dg~vD~~~~~~Li~ 111 (248)
T PRK11572 37 TPSLGVLKSVRERVTIPVHPII-R-PRGGDFCYSDGEFAAMLEDIATVRELG---FPGLVTGVLDVDGHVDMPRMRKIMA 111 (248)
T ss_pred CCCHHHHHHHHHhcCCCeEEEE-e-cCCCCCCCCHHHHHHHHHHHHHHHHcC---CCEEEEeeECCCCCcCHHHHHHHHH
Confidence 3456677777775 77777654 2 233344554433 34566777788 99998632 11 11122222221
Q ss_pred cCCCCCcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeE
Q 004721 398 LGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVP 451 (733)
Q Consensus 398 ~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~ 451 (733)
. .++.+ +.=||.+-.. .+-..|++..+++|++.| ||.-|..
T Consensus 112 ~-----a~~~~-vTFHRAfD~~--~d~~~al~~l~~lG~~rI-----LTSGg~~ 152 (248)
T PRK11572 112 A-----AGPLA-VTFHRAFDMC--ANPLNALKQLADLGVARI-----LTSGQQQ 152 (248)
T ss_pred H-----hcCCc-eEEechhhcc--CCHHHHHHHHHHcCCCEE-----ECCCCCC
Confidence 1 12233 4669987543 478899999999997554 6666554
No 224
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=26.04 E-value=4.9e+02 Score=25.76 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHhc----CCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEE-------eCCHHHHHHH
Q 004721 527 LSDFLEMAKNA----NSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ-------STDSSVLMKL 595 (733)
Q Consensus 527 LeEvL~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~-------Sfd~~~L~~l 595 (733)
++.++..+... ... .+.|++-......+ .+...+...++++++.. +++++. .........+
T Consensus 67 ~~~~~~~~~~~~~~~~~~-~l~ini~~~~l~~~----~~~~~~~~~l~~~~~~~---~~l~iei~e~~~~~~~~~~~~~~ 138 (240)
T cd01948 67 LEEACRQLARWQAGGPDL-RLSVNLSARQLRDP----DFLDRLLELLAETGLPP---RRLVLEITESALIDDLEEALATL 138 (240)
T ss_pred HHHHHHHHHHHHhcCCCe-EEEEECCHHHhCCc----HHHHHHHHHHHHcCCCH---HHEEEEEecchhhCCHHHHHHHH
Q ss_pred Hhc--cCceEEEEeecccchhhhHHHHHHHHH-HhHhcCCCcccccCCc--cccccchHHHHHHHHCCCcEEEEecCCcc
Q 004721 596 REK--TSYELVYKVKENIRDALNQTIEDIKKF-ADSVVLSKESVYPLNS--AFITSATDIVQRLQSFKLPVYVETFSNEF 670 (733)
Q Consensus 596 k~~--p~~~~~~l~~~~~~~~~~~~l~~i~~~-a~~i~~~~~~i~~~~~--~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~ 670 (733)
+.. .++.+++---+. ....++.+..+ .+.|.+....+..... .....-..++..++..|++|.+=.|.+.+
T Consensus 139 ~~l~~~G~~l~ld~~g~----~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~ 214 (240)
T cd01948 139 RRLRALGVRIALDDFGT----GYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEE 214 (240)
T ss_pred HHHHHCCCeEEEeCCCC----cHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecCCHH
Q ss_pred cccccccCCChHHHHHHHHhhcCcCEEE
Q 004721 671 VSQAWDFFSDPTVEINTYYEGAGIDGVI 698 (733)
Q Consensus 671 ~~~~~~~~~d~~~e~~~~l~~~GVdgIi 698 (733)
+...+. ++|||.+.
T Consensus 215 -------------~~~~~~-~~gi~~~Q 228 (240)
T cd01948 215 -------------QLELLR-ELGCDYVQ 228 (240)
T ss_pred -------------HHHHHH-HcCCCeee
No 225
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.68 E-value=1.7e+02 Score=32.33 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC-------------CCCccccchhccc
Q 004721 331 TIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF-------------PLTPSAAVDCFAH 397 (733)
Q Consensus 331 ~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~-------------P~~~~~~l~~~~~ 397 (733)
+.++.+++.|+.|-++. +. .+..+.++.+++.| ||.|+++- |..+.+.++..
T Consensus 122 ~iv~~~~~~~V~v~vr~-~~---------~~~~e~a~~l~eaG---vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~-- 186 (368)
T PRK08649 122 ERIAEIRDAGVIVAVSL-SP---------QRAQELAPTVVEAG---VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL-- 186 (368)
T ss_pred HHHHHHHhCeEEEEEec-CC---------cCHHHHHHHHHHCC---CCEEEEeccchhhhccCCcCCHHHHHHHHHHC--
Confidence 47788888876665554 21 12347788889999 99999953 22222222211
Q ss_pred cCCCCCcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCee
Q 004721 398 LGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (733)
Q Consensus 398 ~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~i 439 (733)
+-| ||+ |.- -|....+++++.|||+|
T Consensus 187 --------~ip-VIa--G~V-----~t~e~A~~l~~aGAD~V 212 (368)
T PRK08649 187 --------DVP-VIV--GGC-----VTYTTALHLMRTGAAGV 212 (368)
T ss_pred --------CCC-EEE--eCC-----CCHHHHHHHHHcCCCEE
Confidence 223 555 331 34567778888999988
No 226
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=25.43 E-value=1.9e+02 Score=30.16 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=40.4
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChH--HHHHHHHhhcCcCEEEeCChH---HHHHHHH
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPT--VEINTYYEGAGIDGVITEFPM---TAARYRS 710 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~--~e~~~~l~~~GVdgIiTD~P~---~~~~~l~ 710 (733)
-...+..+|++|+++..|..-.... ..-+|..|+. .-..++-.++|+|-|=|+||. .++++.+
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~-~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~ 199 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPA-IKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVA 199 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCc-ccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHH
Confidence 3567889999999999995433211 1011334443 344555569999999999994 5555443
No 227
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.32 E-value=7.3e+02 Score=25.24 Aligned_cols=50 Identities=22% Similarity=0.155 Sum_probs=33.7
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHH--HHHHHhh
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTA--ARYRSKL 712 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~--~~~l~~~ 712 (733)
++++++.++++|+.+..-... +. |+...+ ++|++.| ==||... ..|++..
T Consensus 101 ~~~v~~~~~~~~i~~iPG~~T-ps-------------Ei~~A~-~~Ga~~v-KlFPA~~~G~~~ikal 152 (222)
T PRK07114 101 NPDIAKVCNRRKVPYSPGCGS-LS-------------EIGYAE-ELGCEIV-KLFPGSVYGPGFVKAI 152 (222)
T ss_pred CHHHHHHHHHcCCCEeCCCCC-HH-------------HHHHHH-HCCCCEE-EECcccccCHHHHHHH
Confidence 589999999999998765433 32 788886 9999865 3355332 3444444
No 228
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=25.29 E-value=7.3e+02 Score=25.18 Aligned_cols=18 Identities=0% Similarity=-0.247 Sum_probs=14.5
Q ss_pred chHHHHHHHHCCCcEEEE
Q 004721 647 ATDIVQRLQSFKLPVYVE 664 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~w 664 (733)
++.-++.++++|+.+...
T Consensus 183 s~~Di~aA~~aGi~~i~v 200 (253)
T TIGR01422 183 TVPDIEEGRNAGMWTVGL 200 (253)
T ss_pred cHHHHHHHHHCCCeEEEE
Confidence 567899999999987544
No 229
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=25.10 E-value=84 Score=34.02 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=29.1
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
.+.+++++|+.|+.|+. ++.+.. +...+. +.|+|+|+.-
T Consensus 125 ~~~~i~~l~~~gi~v~~-~v~s~~-------------~A~~a~-~~G~D~iv~q 163 (330)
T PF03060_consen 125 PPEVIERLHAAGIKVIP-QVTSVR-------------EARKAA-KAGADAIVAQ 163 (330)
T ss_dssp -HHHHHHHHHTT-EEEE-EESSHH-------------HHHHHH-HTT-SEEEEE
T ss_pred hHHHHHHHHHcCCcccc-ccCCHH-------------HHHHhh-hcCCCEEEEe
Confidence 36899999999998875 666665 677775 9999999853
No 230
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.07 E-value=3.4e+02 Score=32.07 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=66.6
Q ss_pred CHHHHHHHHhc-cCceEEEEeec----ccchhhhHHHHHHHHHH--hHhcCCCcccccCCccccccchHHHHHHHHCCCc
Q 004721 588 DSSVLMKLREK-TSYELVYKVKE----NIRDALNQTIEDIKKFA--DSVVLSKESVYPLNSAFITSATDIVQRLQSFKLP 660 (733)
Q Consensus 588 d~~~L~~lk~~-p~~~~~~l~~~----~~~~~~~~~l~~i~~~a--~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~ 660 (733)
.++-|+.+|+. |+.++..|..+ .+....++.++...+.+ .++... .++-. -++.......++.+++.|..
T Consensus 62 pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~--Rifd~-lnd~~n~~~~i~~~k~~G~~ 138 (596)
T PRK14042 62 PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVF--RVFDA-LNDARNLKVAIDAIKSHKKH 138 (596)
T ss_pred HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEE--EEccc-CcchHHHHHHHHHHHHcCCE
Confidence 47889999999 99999888744 23333333333332222 233321 11111 02223345678899999997
Q ss_pred EE---EEecCCcccccccccCCChHHHHHHHHhhcCcCEEE-eC-----ChHHHHHHHHhhcc
Q 004721 661 VY---VETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVI-TE-----FPMTAARYRSKLVR 714 (733)
Q Consensus 661 v~---~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIi-TD-----~P~~~~~~l~~~~~ 714 (733)
+. +||.... |.-+...++.+.+.++|+|.|+ .| .|..+.+.++....
T Consensus 139 ~~~~i~yt~sp~-------~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~ 194 (596)
T PRK14042 139 AQGAICYTTSPV-------HTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQ 194 (596)
T ss_pred EEEEEEecCCCC-------CCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHh
Confidence 73 3665322 2233344555555699999884 34 68887777665543
No 231
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.04 E-value=4.1e+02 Score=31.36 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=79.6
Q ss_pred CHHHHHHHHHhcCCCcccchhhhcCCCccCCCCCcchhH-HHh-hHHHHHhhcccccCCccccccCCCccCCCCChHHHH
Q 004721 257 EVNFLRSIAARFRPSMTKLVFRFLGKSEIEPTTNQTYGS-LLK-NLTFIKTFASGILVPKDYIWPVDESLYLLPHTTIVL 334 (733)
Q Consensus 257 ~~~~l~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~l~~~~~~a~~i~~~~~~i~~~~~~~~~~~~~~~v~ 334 (733)
.|+-|+.+|+..| ++++..++-+.+.+.. ..|.+ +.. -++.. ...|+.... +.. .-+....-...++
T Consensus 62 pwerl~~~r~~~p--nt~lqmL~Rg~N~vGy---~~~~d~vv~~~v~~a--~~~Gidv~R--ifd--~lnd~~n~~~~i~ 130 (596)
T PRK14042 62 PWSRLRQLRQALP--NTQLSMLLRGQNLLGY---RNYADDVVRAFVKLA--VNNGVDVFR--VFD--ALNDARNLKVAID 130 (596)
T ss_pred HHHHHHHHHHhCC--CCceEEEecccccccc---ccCChHHHHHHHHHH--HHcCCCEEE--Ecc--cCcchHHHHHHHH
Confidence 4678999999998 7787764433332211 11221 111 11111 233332211 110 0011111245788
Q ss_pred HHHHcCCeEEE---eecCCCCCcccCCCCCh-HHHHHHHHhcCCcccceEEe-c-----CCCCccccchhccccCCCCCc
Q 004721 335 DAHKERLEVFA---SNFANDIPISFNYSYDP-LTEYLSFIDNGDFSVDGVLS-D-----FPLTPSAAVDCFAHLGKNASK 404 (733)
Q Consensus 335 ~ah~~Gl~V~~---WTvn~~~~~~~~~~~d~-~~~~~~l~~~G~~~VDgIiT-D-----~P~~~~~~l~~~~~~~~~~~~ 404 (733)
.+++.|..+.+ ||.... +..+. .+..+.+.++| +|.|.- | .|..+.+.++..... .
T Consensus 131 ~~k~~G~~~~~~i~yt~sp~------~t~e~~~~~ak~l~~~G---ad~I~IkDtaG~l~P~~v~~lv~alk~~-----~ 196 (596)
T PRK14042 131 AIKSHKKHAQGAICYTTSPV------HTLDNFLELGKKLAEMG---CDSIAIKDMAGLLTPTVTVELYAGLKQA-----T 196 (596)
T ss_pred HHHHcCCEEEEEEEecCCCC------CCHHHHHHHHHHHHHcC---CCEEEeCCcccCCCHHHHHHHHHHHHhh-----c
Confidence 99999997643 676431 11112 24466778888 997753 4 355555555544321 1
Q ss_pred CCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeeecCcee
Q 004721 405 SANLLVISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQM 445 (733)
Q Consensus 405 ~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~l 445 (733)
+-| |--|-= .-....++.+..|++.|||.|++-+.-
T Consensus 197 -~ip-i~~H~H---nt~Gla~an~laAieaGad~iD~ai~g 232 (596)
T PRK14042 197 -GLP-VHLHSH---STSGLASICHYEAVLAGCNHIDTAISS 232 (596)
T ss_pred -CCE-EEEEeC---CCCCcHHHHHHHHHHhCCCEEEecccc
Confidence 122 333431 233344555556678999988766544
No 232
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.79 E-value=3.4e+02 Score=27.21 Aligned_cols=117 Identities=11% Similarity=0.119 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHH---Hhc-cCceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccc
Q 004721 562 TNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKL---REK-TSYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVY 637 (733)
Q Consensus 562 ~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~l---k~~-p~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~ 637 (733)
...+++.+.+.|+. -+-|.--++..+..+ ++. |++.++.-+ .- + .++++.. +.....+++
T Consensus 18 a~~ia~al~~gGi~-----~iEit~~tp~a~~~I~~l~~~~~~~~vGAGT---Vl--~---~e~a~~a---i~aGA~Fiv 81 (201)
T PRK06015 18 AVPLARALAAGGLP-----AIEITLRTPAALDAIRAVAAEVEEAIVGAGT---IL--N---AKQFEDA---AKAGSRFIV 81 (201)
T ss_pred HHHHHHHHHHCCCC-----EEEEeCCCccHHHHHHHHHHHCCCCEEeeEe---Cc--C---HHHHHHH---HHcCCCEEE
Confidence 34677888888876 444554455555444 444 654443222 11 1 1222221 111333343
Q ss_pred cCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHH---HHHHHhhcc
Q 004721 638 PLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTA---ARYRSKLVR 714 (733)
Q Consensus 638 ~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~---~~~l~~~~~ 714 (733)
.. ..++++++.++++|+.+..-... +. |+...+ ++|.+.| ==||... ..|++....
T Consensus 82 SP-----~~~~~vi~~a~~~~i~~iPG~~T-pt-------------Ei~~A~-~~Ga~~v-K~FPa~~~GG~~yikal~~ 140 (201)
T PRK06015 82 SP-----GTTQELLAAANDSDVPLLPGAAT-PS-------------EVMALR-EEGYTVL-KFFPAEQAGGAAFLKALSS 140 (201)
T ss_pred CC-----CCCHHHHHHHHHcCCCEeCCCCC-HH-------------HHHHHH-HCCCCEE-EECCchhhCCHHHHHHHHh
Confidence 22 12589999999999998765433 32 788886 9999864 3466432 356665543
Q ss_pred c
Q 004721 715 K 715 (733)
Q Consensus 715 ~ 715 (733)
.
T Consensus 141 p 141 (201)
T PRK06015 141 P 141 (201)
T ss_pred h
Confidence 3
No 233
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=24.78 E-value=4.8e+02 Score=27.53 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=42.1
Q ss_pred hHHHHHHHHC--CCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC--ChHHHHHHHHhhc-cccccccCC
Q 004721 648 TDIVQRLQSF--KLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE--FPMTAARYRSKLV-RKQTSLCLY 722 (733)
Q Consensus 648 ~~~v~~~~~~--Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD--~P~~~~~~l~~~~-~~~~~~~~~ 722 (733)
.+.++.++++ +.++-+=.- +.+ +..+++ +.|+|.|+-| .|+.+.+..+... ..+....+.
T Consensus 176 ~~av~~~r~~~~~~kIeVEv~-tle-------------ea~ea~-~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~~lea 240 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITVEAD-TIE-------------QALTVL-QASPDILQLDKFTPQQLHHLHERLKFFDHIPTLAA 240 (277)
T ss_pred HHHHHHHHHhCCCCCEEEECC-CHH-------------HHHHHH-HcCcCEEEECCCCHHHHHHHHHHHhccCCCEEEEE
Confidence 4677888876 455555443 333 788887 9999999999 7888888776542 223333344
Q ss_pred CceEE
Q 004721 723 GAGIH 727 (733)
Q Consensus 723 ~~~~~ 727 (733)
.+||+
T Consensus 241 sGGI~ 245 (277)
T TIGR01334 241 AGGIN 245 (277)
T ss_pred ECCCC
Confidence 44443
No 234
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=24.77 E-value=3.2e+02 Score=34.96 Aligned_cols=120 Identities=11% Similarity=-0.014 Sum_probs=66.1
Q ss_pred HHHHHHHHhc-cCceEEEEeecc----cchhhhHHHHHHHHH--HhHhcCCCcccccCCccccccchHHHHHHHHCCCcE
Q 004721 589 SSVLMKLREK-TSYELVYKVKEN----IRDALNQTIEDIKKF--ADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPV 661 (733)
Q Consensus 589 ~~~L~~lk~~-p~~~~~~l~~~~----~~~~~~~~l~~i~~~--a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v 661 (733)
|+-|+.+|+. |+.++..|..+. +....++.++.+.+. ..+|.+. .++-. -+++..-...++.+++.|..+
T Consensus 592 werl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~Gidif--rifD~-lN~~~n~~~~~~~~~~~g~~~ 668 (1143)
T TIGR01235 592 WERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIF--RVFDS-LNWVENMRVGMDAVAEAGKVV 668 (1143)
T ss_pred HHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEE--EECcc-CcCHHHHHHHHHHHHHcCCEE
Confidence 5678999999 999998887652 333333334433222 2334331 11110 123333466788999999986
Q ss_pred ---EEEecCCcccccccccCCChHHHHHHHHhhcCcCEEE-eC-----ChHHHHHHHHhh
Q 004721 662 ---YVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVI-TE-----FPMTAARYRSKL 712 (733)
Q Consensus 662 ---~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIi-TD-----~P~~~~~~l~~~ 712 (733)
.+||-+-.+.. ...|..+...++.+-+.++|+|.|. .| .|..+.+.++..
T Consensus 669 ~~~i~yt~~~~d~~-~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~l 727 (1143)
T TIGR01235 669 EAAICYTGDILDPA-RPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKAL 727 (1143)
T ss_pred EEEEEEeccCCCcC-CCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHH
Confidence 66774222100 0122233344454444699999884 34 577776665544
No 235
>PRK13561 putative diguanylate cyclase; Provisional
Probab=24.70 E-value=4.2e+02 Score=31.43 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=38.0
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCC---hHHHHHHHH
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEF---PMTAARYRS 710 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~---P~~~~~~l~ 710 (733)
..++..+|..|++|.+=.|.+++ +...+ .++|||++.=-+ |..+.++.+
T Consensus 594 ~~i~~~a~~l~i~viAegVE~~~-------------~~~~l-~~~g~d~~QG~~~~~P~~~~~~~~ 645 (651)
T PRK13561 594 AAIIMLAQSLNLQVIAEGVETEA-------------QRDWL-LKAGVGIAQGFLFARALPIEIFEE 645 (651)
T ss_pred HHHHHHHHHCCCcEEEecCCCHH-------------HHHHH-HhcCCCEEeCCcccCCCCHHHHHH
Confidence 56788999999999999999986 55555 699999887653 665555543
No 236
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.51 E-value=95 Score=33.48 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=27.9
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEe
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT 699 (733)
|..++.+|++|++|+ +++.+.. +..++. +.|+|+|+-
T Consensus 93 P~~~~~lk~~Gi~v~-~~v~s~~-------------~A~~a~-~~GaD~vVa 129 (320)
T cd04743 93 PDQARALEAIGISTY-LHVPSPG-------------LLKQFL-ENGARKFIF 129 (320)
T ss_pred hHHHHHHHHCCCEEE-EEeCCHH-------------HHHHHH-HcCCCEEEE
Confidence 345799999999998 4455554 567775 999999984
No 237
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=24.32 E-value=95 Score=30.99 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=31.4
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
..+++.+|+.|++|.+..|+++ ++.+.+.+.| ||.+.=+
T Consensus 193 ~~l~~~~~~~~~~via~gVe~~------------~~~~~l~~~G---~~~~QG~ 231 (236)
T PF00563_consen 193 QSLINLAKSLGIKVIAEGVESE------------EQLELLKELG---VDYIQGY 231 (236)
T ss_dssp HHHHHHHHHTT-EEEEECE-SH------------HHHHHHHHTT---ESEEEST
T ss_pred HHHHHHhhccccccceeecCCH------------HHHHHHHHcC---CCEEEeC
Confidence 4588899999999999999875 8899999999 9977543
No 238
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=24.05 E-value=3.8e+02 Score=30.47 Aligned_cols=138 Identities=14% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEE----eC-----CHHHHHHHHh
Q 004721 527 LSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQ----ST-----DSSVLMKLRE 597 (733)
Q Consensus 527 LeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~----Sf-----d~~~L~~lk~ 597 (733)
|+|+=++++..+.. .+.||+-..... ...+...+...+++++... +||-+- +| ....+.++|+
T Consensus 341 ~~dlG~~L~~~~~l-~VsINl~a~Dl~----s~rli~~~~~~l~~~~v~p---qQI~lElTER~f~D~~~~~~iI~r~Re 412 (524)
T COG4943 341 FRDLGDLLRQHRDL-HVSINLSASDLA----SPRLIDRLNRKLAQYQVRP---QQIALELTERTFADPKKMTPIILRLRE 412 (524)
T ss_pred HHHhHHHHHhCcce-EEEEeeeehhhc----CchHHHHHHHHHHhcCcCh---HHheeehhhhhhcCchhhhHHHHHHHh
Confidence 55555666665443 666666544432 2356777777888887764 344433 11 2345556665
Q ss_pred ccCceEEEEeecc--cc------hhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCc
Q 004721 598 KTSYELVYKVKEN--IR------DALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNE 669 (733)
Q Consensus 598 ~p~~~~~~l~~~~--~~------~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~ 669 (733)
. +..+ ++-+.+ ++ ++.-+.++.-+.|.+.++-..- . ....+.+++-+|..|+++.+=+|.++
T Consensus 413 a-G~~I-yIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a-~-------~~I~~hII~MAk~L~L~iVaEGVEte 482 (524)
T COG4943 413 A-GHEI-YIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSA-S-------HLIAPHIIEMAKSLGLKIVAEGVETE 482 (524)
T ss_pred c-CCeE-EEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcc-c-------chhHHHHHHHHHHcCCcEEeecccHH
Confidence 4 2222 221111 11 1111223333455555543210 0 12357899999999999999999988
Q ss_pred ccccccccCCChHHHHHHHHhhcCcCE
Q 004721 670 FVSQAWDFFSDPTVEINTYYEGAGIDG 696 (733)
Q Consensus 670 ~~~~~~~~~~d~~~e~~~~l~~~GVdg 696 (733)
+ +.. ++.+.||+.
T Consensus 483 e-------------Q~~-~LR~~Gv~~ 495 (524)
T COG4943 483 E-------------QVD-WLRKRGVHY 495 (524)
T ss_pred H-------------HHH-HHHHcCCcc
Confidence 5 444 556888763
No 239
>PRK15452 putative protease; Provisional
Probab=24.05 E-value=1.8e+02 Score=32.99 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=0.0
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHh---hcCcCEEEeCChHHHHHHHH
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYE---GAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~---~~GVdgIiTD~P~~~~~~l~ 710 (733)
.+.++.+|++|.+|++ |+|.-. ..+....+..++. ++|||||+.-.|..+.-+.+
T Consensus 49 ~eav~~ah~~g~kvyv-t~n~i~-------~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke 106 (443)
T PRK15452 49 ALGINEAHALGKKFYV-VVNIAP-------HNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVRE 106 (443)
T ss_pred HHHHHHHHHcCCEEEE-EecCcC-------CHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHH
No 240
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=23.71 E-value=3.2e+02 Score=26.82 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHcC--CeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhccccCCCCCcCCcc
Q 004721 331 TIVLDAHKER--LEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANL 408 (733)
Q Consensus 331 ~~v~~ah~~G--l~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~~~~~~~~~~~~~ 408 (733)
+.++.+++.- +.+.+-|+=+. +..+.++..| +|+|.+ |.....+++.-...+ .+
T Consensus 44 ~~i~~l~~~~~~~~iGag~v~~~------------~~~~~a~~~G---a~~i~~--p~~~~~~~~~~~~~~-------~~ 99 (190)
T cd00452 44 EAIRALRKEFPEALIGAGTVLTP------------EQADAAIAAG---AQFIVS--PGLDPEVVKAANRAG-------IP 99 (190)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCH------------HHHHHHHHcC---CCEEEc--CCCCHHHHHHHHHcC-------Cc
Q ss_pred eEEecCCCCCCCCCchHHHHHHHHHCCCCeeecC
Q 004721 409 LVISKNGASGDYPSCTNLAYQKAISDGVDFIDCP 442 (733)
Q Consensus 409 ~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~D 442 (733)
.++ |.+ |..=..+|.+.|||+|-++
T Consensus 100 ~i~---gv~------t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 100 LLP---GVA------TPTEIMQALELGADIVKLF 124 (190)
T ss_pred EEC---CcC------CHHHHHHHHHCCCCEEEEc
No 241
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=23.42 E-value=1.1e+02 Score=33.67 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=77.2
Q ss_pred cCHHHHHHHHHhcCCCceE-EEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-cCce
Q 004721 525 MKLSDFLEMAKNANSLSGV-LISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-TSYE 602 (733)
Q Consensus 525 ptLeEvL~~~~~~~~~~~l-~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~ 602 (733)
.+.+|.|-.+..-.+ +|+ .+|+=.. .-.+..+..|++-- |+-|+.+|+. |+.+
T Consensus 25 mrt~DmlPi~e~lD~-~G~~slE~WGG---------ATFDaciRfLnEDP---------------WeRLr~lk~~~~nT~ 79 (472)
T COG5016 25 MRTEDMLPIAEALDK-VGYWSLEVWGG---------ATFDACIRFLNEDP---------------WERLRELKKAVPNTK 79 (472)
T ss_pred HhHHhhHHHHHHHHh-cCeeEEEecCC---------ccHHHHHHHhcCCH---------------HHHHHHHHHhCCCcH
Confidence 556777766654422 244 4665432 22344555554432 4568888888 8877
Q ss_pred EEEEeec----ccchhhhHHHHHHHHHH--hHhcCCCcccccCCccccccchHHHHHHHHCCCcE---EEEecCCccccc
Q 004721 603 LVYKVKE----NIRDALNQTIEDIKKFA--DSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPV---YVETFSNEFVSQ 673 (733)
Q Consensus 603 ~~~l~~~----~~~~~~~~~l~~i~~~a--~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v---~~wTvn~~~~~~ 673 (733)
+..|..+ .+....++.++.+.+.+ +++.+ -.++-.- +....-..-++.+++.|..+ .+||..-. +
T Consensus 80 LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidv--fRiFDAl-ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPv---H 153 (472)
T COG5016 80 LQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDV--FRIFDAL-NDVRNLKTAIKAAKKHGAHVQGTISYTTSPV---H 153 (472)
T ss_pred HHHHHccCccccccCCchHHHHHHHHHHHhcCCcE--EEechhc-cchhHHHHHHHHHHhcCceeEEEEEeccCCc---c
Confidence 6544433 12222233333332222 22322 1111110 11122355688899999987 45655432 1
Q ss_pred ccccCCChHHHHHHHHhhcCcCEEEeC------ChHHHHHHHHhh
Q 004721 674 AWDFFSDPTVEINTYYEGAGIDGVITE------FPMTAARYRSKL 712 (733)
Q Consensus 674 ~~~~~~d~~~e~~~~l~~~GVdgIiTD------~P~~~~~~l~~~ 712 (733)
... ...++.+-+.++|||.|+-- .|..+.+.++..
T Consensus 154 t~e----~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~i 194 (472)
T COG5016 154 TLE----YYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAI 194 (472)
T ss_pred cHH----HHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHH
Confidence 121 22244333359999999754 466666665544
No 242
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.22 E-value=9.8e+02 Score=25.95 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=41.4
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChH--HHHHHHHhhcCcCEEE-eC-----ChHHHHHHHHhhcccc
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPT--VEINTYYEGAGIDGVI-TE-----FPMTAARYRSKLVRKQ 716 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~--~e~~~~l~~~GVdgIi-TD-----~P~~~~~~l~~~~~~~ 716 (733)
....++.++++|+.|.+.-.... ..+++ .++.+.+.+.|+|.|. .| .|..+.++++......
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~--------~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSH--------MAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEecc--------CCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999987654332 12332 3444444689999874 55 6888888777654433
No 243
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.79 E-value=1.4e+02 Score=31.23 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=34.1
Q ss_pred ChHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHH-HhcCCcccceEEecCCCC
Q 004721 329 HTTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSF-IDNGDFSVDGVLSDFPLT 387 (733)
Q Consensus 329 ~~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l-~~~G~~~VDgIiTD~P~~ 387 (733)
++++++.+|+.|++|.+|+--- ... +- .+.++++ .+.| |||+-+|.-+-
T Consensus 68 p~~~i~~l~~~g~~~~~~~~P~--v~~--w~---~~~~~~~~~~~G---vdg~w~D~~E~ 117 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWIDPY--IRE--WW---AEVVKKLLVSLG---VDGFWTDMGEP 117 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeChh--HHH--HH---HHHHHHhhccCC---CCEEeccCCCC
Confidence 5789999999999999998321 000 00 1344554 6778 99999997554
No 244
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.58 E-value=3.4e+02 Score=26.78 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=32.2
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
.++++.++++|+++.+-..+.. ++.++++.+.+.| +|.|..+
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~---------t~~~~~~~~~~~g---~d~v~~~ 133 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVK---------DKVKRAKELKELG---ADYIGVH 133 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCC---------ChHHHHHHHHHcC---CCEEEEc
Confidence 5789999999999987544421 2347788888888 9999886
No 245
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=22.45 E-value=1.1e+02 Score=31.65 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=34.0
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
-..++..+|+.|++|.+..|.+.+ ++..+ .++|||.+.=.
T Consensus 195 v~~iv~la~~l~~~vvaEGVEt~~-------------ql~~L-~~~G~~~~QGy 234 (256)
T COG2200 195 VRAIVALAHKLGLTVVAEGVETEE-------------QLDLL-RELGCDYLQGY 234 (256)
T ss_pred HHHHHHHHHHCCCEEEEeecCCHH-------------HHHHH-HHcCCCeEeec
Confidence 367899999999999999999996 56655 59999988766
No 246
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.33 E-value=8.1e+02 Score=24.67 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=77.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEecchhHHHhhcCCcHHHHHHHHHHHcCCCCCCCceEEEEeCCH---HHHHHHHhc-cCc
Q 004721 526 KLSDFLEMAKNANSLSGVLISIENAVYLAEKQGMSVTNSVMEALGNAGYNKQTALKVMIQSTDS---SVLMKLREK-TSY 601 (733)
Q Consensus 526 tLeEvL~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~---~~L~~lk~~-p~~ 601 (733)
|..++++.+.+. ++.-=+..... +-...+.+.+.+.|+. -+-|.--.+ +.++.+++. |++
T Consensus 4 ~~~~~~~~l~~~----~~iaV~r~~~~-------~~a~~i~~al~~~Gi~-----~iEitl~~~~~~~~I~~l~~~~p~~ 67 (212)
T PRK05718 4 WKTSIEEILRAG----PVVPVIVINKL-------EDAVPLAKALVAGGLP-----VLEVTLRTPAALEAIRLIAKEVPEA 67 (212)
T ss_pred hHHHHHHHHHHC----CEEEEEEcCCH-------HHHHHHHHHHHHcCCC-----EEEEecCCccHHHHHHHHHHHCCCC
Confidence 345666777766 34443443321 2234577888888876 333442223 356666665 765
Q ss_pred eEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCCh
Q 004721 602 ELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDP 681 (733)
Q Consensus 602 ~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~ 681 (733)
.++.-+- . ++ ++++.. +....+++... ..++++++.+++.|+.+..-.. ++.
T Consensus 68 ~IGAGTV--l---~~---~~a~~a---~~aGA~FivsP-----~~~~~vi~~a~~~~i~~iPG~~-Tpt----------- 119 (212)
T PRK05718 68 LIGAGTV--L---NP---EQLAQA---IEAGAQFIVSP-----GLTPPLLKAAQEGPIPLIPGVS-TPS----------- 119 (212)
T ss_pred EEEEeec--c---CH---HHHHHH---HHcCCCEEECC-----CCCHHHHHHHHHcCCCEeCCCC-CHH-----------
Confidence 4442221 1 11 222221 11123333321 1257899999999998764322 222
Q ss_pred HHHHHHHHhhcCcCEEEeCChHHH---HHHHHhhccc
Q 004721 682 TVEINTYYEGAGIDGVITEFPMTA---ARYRSKLVRK 715 (733)
Q Consensus 682 ~~e~~~~l~~~GVdgIiTD~P~~~---~~~l~~~~~~ 715 (733)
|+.+.+ ++|++.|.- +|... ..+++.....
T Consensus 120 --Ei~~a~-~~Ga~~vKl-FPa~~~gg~~~lk~l~~p 152 (212)
T PRK05718 120 --ELMLGM-ELGLRTFKF-FPAEASGGVKMLKALAGP 152 (212)
T ss_pred --HHHHHH-HCCCCEEEE-ccchhccCHHHHHHHhcc
Confidence 678786 999998877 88664 4666655433
No 247
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=21.93 E-value=85 Score=32.93 Aligned_cols=36 Identities=17% Similarity=-0.021 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHcCCCCcEEEeeeeecCCCeEEEecCCC
Q 004721 106 DSSSIAYSLTLITSAPSVILWCDVQLTKDEAGICFPDLK 144 (733)
Q Consensus 106 ENTl~af~~A~~~g~d~~~iE~DV~lTkDg~lVv~HD~~ 144 (733)
-|-.-++...++.|+. ++|+||+... +.+.++|-..
T Consensus 41 ~nQ~~sI~~QL~~GvR--~LdLdv~~~~-~~l~v~Hg~~ 76 (267)
T cd08590 41 PNQELSITDQLDLGAR--FLELDVHWTT-GDLRLCHGGD 76 (267)
T ss_pred cccCcCHHHHHhhCCc--EEEEeeeeCC-CCEEEEccCc
Confidence 4555688999999999 9999999764 6677778643
No 248
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=21.91 E-value=1e+02 Score=37.07 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=53.3
Q ss_pred chHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC-ChHHHHHHHHhhccccccccCCCce
Q 004721 647 ATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE-FPMTAARYRSKLVRKQTSLCLYGAG 725 (733)
Q Consensus 647 ~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD-~P~~~~~~l~~~~~~~~~~~~~~~~ 725 (733)
..+.++++|+.|+++.--|-+++. ......+++|+|-+..+ -|+.=.+.+++.-.+-.+..=.|-|
T Consensus 542 a~~aI~~L~~~Gi~~~mLTGDn~~-------------~A~~iA~~lGId~v~AellPedK~~~V~~l~~~g~~VamVGDG 608 (713)
T COG2217 542 AKEAIAALKALGIKVVMLTGDNRR-------------TAEAIAKELGIDEVRAELLPEDKAEIVRELQAEGRKVAMVGDG 608 (713)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHH-------------HHHHHHHHcChHhheccCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467899999999999888888876 67777789999999999 8888777776665444455556766
Q ss_pred EE
Q 004721 726 IH 727 (733)
Q Consensus 726 ~~ 727 (733)
||
T Consensus 609 IN 610 (713)
T COG2217 609 IN 610 (713)
T ss_pred ch
Confidence 65
No 249
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.81 E-value=3.8e+02 Score=31.67 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=62.9
Q ss_pred CHHHHHHHHhc-cCceEEEEeecc----cchhhhHHHHHHHHHHhHhcCCCcccccCCccccccchHHHHHHHHCCCcE-
Q 004721 588 DSSVLMKLREK-TSYELVYKVKEN----IRDALNQTIEDIKKFADSVVLSKESVYPLNSAFITSATDIVQRLQSFKLPV- 661 (733)
Q Consensus 588 d~~~L~~lk~~-p~~~~~~l~~~~----~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~v- 661 (733)
.++.|+.+++. |+.++..+..+. +....++.++...+.+..-++..-.+.... +.+......++.++++|+.+
T Consensus 63 p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~l-nd~~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 63 PWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAM-NDPRNLETALKAVRKVGAHAQ 141 (593)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeC-CcHHHHHHHHHHHHHcCCeEE
Confidence 46788888888 888887666431 111112222222222222222111111110 11222356789999999975
Q ss_pred --EEEecCCcccccccccCCChHHHHHHHHhhcCcCEE-EeC-----ChHHHHHHHHhhc
Q 004721 662 --YVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGV-ITE-----FPMTAARYRSKLV 713 (733)
Q Consensus 662 --~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgI-iTD-----~P~~~~~~l~~~~ 713 (733)
.+||..... ..|...++.+.+.++|+|.| +.| .|..+.+.++...
T Consensus 142 ~~i~yt~~p~~-------~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk 194 (593)
T PRK14040 142 GTLSYTTSPVH-------TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIK 194 (593)
T ss_pred EEEEEeeCCcc-------CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 556654321 12223355554568999988 455 6888877766554
No 250
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=21.67 E-value=5.9e+02 Score=27.20 Aligned_cols=137 Identities=24% Similarity=0.365 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHH----Hhc----cCc--eEEEEeecccchhhhHHHHHHH-HHHhH
Q 004721 560 SVTNSVMEALGNAGYNKQTALKVMIQSTDSSVLMKL----REK----TSY--ELVYKVKENIRDALNQTIEDIK-KFADS 628 (733)
Q Consensus 560 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~l----k~~----p~~--~~~~l~~~~~~~~~~~~l~~i~-~~a~~ 628 (733)
..+.++-+.|.+.|.. .|.|.|++......+ |+. |.+ +-.|-++.. . ....+.++. ...++
T Consensus 175 GrV~aIR~aLd~ag~~-----~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpa--N-~~EAlrE~~lD~~EG 246 (330)
T COG0113 175 GRVGAIREALDEAGFI-----DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPA--N-RREALREIELDIEEG 246 (330)
T ss_pred chHHHHHHHHHHcCCC-----cceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCc--C-HHHHHHHHHhhHhcC
Confidence 5677888889999887 888889876544333 222 111 111222111 0 011122221 11111
Q ss_pred hcCCCcccccCCccccccchHHHHHHHH-CCCcEEEEecCCccccc---ccccCCChHH---HHHHHHhhcCcCEEEeCC
Q 004721 629 VVLSKESVYPLNSAFITSATDIVQRLQS-FKLPVYVETFSNEFVSQ---AWDFFSDPTV---EINTYYEGAGIDGVITEF 701 (733)
Q Consensus 629 i~~~~~~i~~~~~~~l~~~~~~v~~~~~-~Gl~v~~wTvn~~~~~~---~~~~~~d~~~---e~~~~l~~~GVdgIiTD~ 701 (733)
- ...++-|.. .|| ++++.+++ .++++.+|-|.-+.-++ +.+-|-|... |....++..|+|+|+|=+
T Consensus 247 A--D~lMVKPal-~YL----DIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYf 319 (330)
T COG0113 247 A--DILMVKPAL-PYL----DIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYF 319 (330)
T ss_pred C--cEEEEcCCc-hHH----HHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEeec
Confidence 1 111222322 343 56777665 68999999888764321 1122445432 344455799999999999
Q ss_pred hHHHHHHHHh
Q 004721 702 PMTAARYRSK 711 (733)
Q Consensus 702 P~~~~~~l~~ 711 (733)
-..+.+++++
T Consensus 320 A~e~a~~L~~ 329 (330)
T COG0113 320 AKEVAEWLKE 329 (330)
T ss_pred HHHHHHHhhc
Confidence 9999888764
No 251
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=21.52 E-value=1.1e+02 Score=28.92 Aligned_cols=95 Identities=11% Similarity=0.099 Sum_probs=60.3
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecCCCCccccchhccccCCCCCcCCcce
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDFPLTPSAAVDCFAHLGKNASKSANLL 409 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~P~~~~~~l~~~~~~~~~~~~~~~~~ 409 (733)
..+...++++|+.+.-|..+++ .....|.+.| -.-|--+.+ .......++
T Consensus 33 s~V~~ALr~aG~~~~g~~~nT~------------tl~~~L~~~G---~~~I~~~~~---------------~~~q~GDI~ 82 (145)
T PF05382_consen 33 SFVYQALRAAGFKIPGSAGNTE------------TLHDWLKKNG---FKKISENVD---------------WNLQRGDIF 82 (145)
T ss_pred HHHHHHHHHcCCCCCCCccCHH------------HHHHHHhhCC---cEEeccCCc---------------ccccCCCEE
Confidence 4567778899998877776653 4556677777 322221100 123345688
Q ss_pred EEecCCCCCCCCCchHHHHHHHHHCCCCeeecCceeecCCeEEEeecccccc
Q 004721 410 VISKNGASGDYPSCTNLAYQKAISDGVDFIDCPVQMSKDGVPFCLSFINLIN 461 (733)
Q Consensus 410 iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDgv~Vv~HD~~L~r 461 (733)
|.+++|.++-.+-+|.--.. -...|.||= ..+|+-|=-||.....
T Consensus 83 I~g~~g~S~G~~GHtgif~~-----~~~iIhc~y--~~~g~~~~~~~~~~~~ 127 (145)
T PF05382_consen 83 IWGRRGNSAGAGGHTGIFMD-----NDTIIHCNY--GANGIAINNYDWYWYY 127 (145)
T ss_pred EEcCCCCCCCCCCeEEEEeC-----CCcEEEecC--CCCCeEecCCCeeeec
Confidence 99999988777777754421 245777773 7788877777755443
No 252
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.26 E-value=3.1e+02 Score=26.89 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=29.1
Q ss_pred hHHHHHHHHcCCeEEE--eecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 330 TTIVLDAHKERLEVFA--SNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~--WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
.++++.++++|+++.+ -+..+ ..+..++...| +|.|...
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t------------~~e~~~~~~~~---~d~v~~~ 133 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVED------------PEKRAKLLKLG---VDIVILH 133 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCC------------HHHHHHHHHCC---CCEEEEc
Confidence 4689999999999986 45443 25555678888 9998773
No 253
>PRK10060 RNase II stability modulator; Provisional
Probab=21.26 E-value=3.8e+02 Score=32.04 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=32.4
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEec
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSD 383 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD 383 (733)
..++..||..|++|.+=.|.++ +++..+.++| ||.+.=-
T Consensus 601 ~~ii~~a~~lg~~viAeGVEt~------------~q~~~l~~~G---~d~~QGy 639 (663)
T PRK10060 601 RAIVAVAQALNLQVIAEGVETA------------KEDAFLTKNG---VNERQGF 639 (663)
T ss_pred HHHHHHHHHCCCcEEEecCCCH------------HHHHHHHHcC---CCEEecC
Confidence 4578899999999999998764 7889999999 8866544
No 254
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.73 E-value=1.8e+02 Score=30.91 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred hHHHHHHHHcCCeEEEeecCCCCCcccCCCCChHHHHHHHHhcCCcccceEEecC--CCCccccchhccccCCCCCcCCc
Q 004721 330 TTIVLDAHKERLEVFASNFANDIPISFNYSYDPLTEYLSFIDNGDFSVDGVLSDF--PLTPSAAVDCFAHLGKNASKSAN 407 (733)
Q Consensus 330 ~~~v~~ah~~Gl~V~~WTvn~~~~~~~~~~~d~~~~~~~l~~~G~~~VDgIiTD~--P~~~~~~l~~~~~~~~~~~~~~~ 407 (733)
.+.|++++++.-...-..|. +++.++...+++.| +|.|.-|+ |+.++++++... .+
T Consensus 184 ~~av~~~r~~~~~~~kIeVE----------v~tleea~~a~~ag---aDiImLDnmspe~l~~av~~~~---------~~ 241 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEVE----------VESLAAAEEAAAAG---ADIIMLDNMSLEQIEQAITLIA---------GR 241 (290)
T ss_pred HHHHHHHHHhCCCCCeEEEE----------CCCHHHHHHHHHcC---CCEEEECCCCHHHHHHHHHHhc---------Cc
Q ss_pred ceEEecCCCCCCCCCchHHHHHHHHHCCCCee
Q 004721 408 LLVISKNGASGDYPSCTNLAYQKAISDGVDFI 439 (733)
Q Consensus 408 ~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~i 439 (733)
..+.+-.| ..++++++| .+.|+|+|
T Consensus 242 ~~leaSGG----I~~~ni~~y---A~tGVD~I 266 (290)
T PRK06559 242 SRIECSGN----IDMTTISRF---RGLAIDYV 266 (290)
T ss_pred eEEEEECC----CCHHHHHHH---HhcCCCEE
No 255
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=20.63 E-value=4.9e+02 Score=26.17 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=29.6
Q ss_pred cchHHHHHHHHC-CCcEEEE-ecCCcccccccccCCChHHHHHHHHhhcCcCEEEe
Q 004721 646 SATDIVQRLQSF-KLPVYVE-TFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVIT 699 (733)
Q Consensus 646 ~~~~~v~~~~~~-Gl~v~~w-Tvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiT 699 (733)
.++++++++++. ++++.+- .+++.+ ++++++ +.|+|+|++
T Consensus 163 v~~e~i~~Vk~~~~~Pv~vGGGIrs~e-------------~a~~l~-~~GAD~VVV 204 (205)
T TIGR01769 163 VNPETISLVKKASGIPLIVGGGIRSPE-------------IAYEIV-LAGADAIVT 204 (205)
T ss_pred CCHHHHHHHHHhhCCCEEEeCCCCCHH-------------HHHHHH-HcCCCEEEe
Confidence 568899988775 5666443 566665 677776 889999985
No 256
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=20.62 E-value=6.8e+02 Score=25.45 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=35.3
Q ss_pred cchHHHHHHHHC--CCcEEEE-ecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC-----ChHHHHHH
Q 004721 646 SATDIVQRLQSF--KLPVYVE-TFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE-----FPMTAARY 708 (733)
Q Consensus 646 ~~~~~v~~~~~~--Gl~v~~w-Tvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD-----~P~~~~~~ 708 (733)
.++++++.+++. ++++.+- .+++.+ ++.+++ +.|+|+|+.- .|+.+.+.
T Consensus 161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e-------------~a~~l~-~aGAD~VVVGsai~~~p~~~~~~ 217 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIVGGGIRSGE-------------QAKEMA-EAGADTIVVGNIVEEDPNAALET 217 (219)
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHH-------------HHHHHH-HcCCCEEEECchhhCCHHHHHHH
Confidence 578899998875 6776554 566665 788886 8899999764 36655544
No 257
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=20.40 E-value=4.1e+02 Score=30.37 Aligned_cols=116 Identities=9% Similarity=0.079 Sum_probs=64.0
Q ss_pred CHHHHHHHHhc-cCceEEEEeecc----cchhhhHHHHHHHHHH--hHhcCCCcccccCCccccccchHHHHHHHHCCCc
Q 004721 588 DSSVLMKLREK-TSYELVYKVKEN----IRDALNQTIEDIKKFA--DSVVLSKESVYPLNSAFITSATDIVQRLQSFKLP 660 (733)
Q Consensus 588 d~~~L~~lk~~-p~~~~~~l~~~~----~~~~~~~~l~~i~~~a--~~i~~~~~~i~~~~~~~l~~~~~~v~~~~~~Gl~ 660 (733)
+++.|+.+++. |+.++..|.-+. +.+..++.++.+.+.+ .++.+. .+... -+........++.+++.|..
T Consensus 71 pwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~--Rifd~-lnd~~n~~~ai~~ak~~G~~ 147 (468)
T PRK12581 71 PWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVF--RIFDA-LNDPRNIQQALRAVKKTGKE 147 (468)
T ss_pred HHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEE--EEccc-CCCHHHHHHHHHHHHHcCCE
Confidence 47889999999 999888776541 2222223233322222 223221 11110 02223346678999999998
Q ss_pred E---EEEecCCcccccccccCCChHHHHHHHHhhcCcCEEE-eC-----ChHHHHHHHHhhc
Q 004721 661 V---YVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVI-TE-----FPMTAARYRSKLV 713 (733)
Q Consensus 661 v---~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIi-TD-----~P~~~~~~l~~~~ 713 (733)
+ .+||.... |..+...++.+.+.++|+|.|+ .| .|..+.+.++...
T Consensus 148 ~~~~i~yt~sp~-------~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 148 AQLCIAYTTSPV-------HTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred EEEEEEEEeCCc-------CcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 5 44554322 1122233444444599999884 45 6888887776653
No 258
>PRK10060 RNase II stability modulator; Provisional
Probab=20.38 E-value=4.1e+02 Score=31.71 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=32.2
Q ss_pred hHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeC
Q 004721 648 TDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITE 700 (733)
Q Consensus 648 ~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD 700 (733)
..++..+|+.|++|.+=.|.+++ ++..+ .++|||.++=-
T Consensus 601 ~~ii~~a~~lg~~viAeGVEt~~-------------q~~~l-~~~G~d~~QGy 639 (663)
T PRK10060 601 RAIVAVAQALNLQVIAEGVETAK-------------EDAFL-TKNGVNERQGF 639 (663)
T ss_pred HHHHHHHHHCCCcEEEecCCCHH-------------HHHHH-HHcCCCEEecC
Confidence 56788899999999999999986 55555 69999988655
No 259
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=20.22 E-value=94 Score=30.19 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCcccceEEecCC--CCccccchhccccCCCCCcCCcceEEecCCCCCCCCCchHHHHHHHHHCCCCeee
Q 004721 363 LTEYLSFIDNGDFSVDGVLSDFP--LTPSAAVDCFAHLGKNASKSANLLVISKNGASGDYPSCTNLAYQKAISDGVDFID 440 (733)
Q Consensus 363 ~~~~~~l~~~G~~~VDgIiTD~P--~~~~~~l~~~~~~~~~~~~~~~~~iIaHRG~~~~~PENTl~Af~~A~~~Gad~iE 440 (733)
.++.+.+++.| +|+|.-|.. +.++++++..... .+++.|.+= |...+++++.|. +.|+|+|-
T Consensus 90 ~ee~~ea~~~g---~d~I~lD~~~~~~~~~~v~~l~~~------~~~v~ie~S----GGI~~~ni~~ya---~~gvD~is 153 (169)
T PF01729_consen 90 LEEAEEALEAG---ADIIMLDNMSPEDLKEAVEELREL------NPRVKIEAS----GGITLENIAEYA---KTGVDVIS 153 (169)
T ss_dssp HHHHHHHHHTT----SEEEEES-CHHHHHHHHHHHHHH------TTTSEEEEE----SSSSTTTHHHHH---HTT-SEEE
T ss_pred HHHHHHHHHhC---CCEEEecCcCHHHHHHHHHHHhhc------CCcEEEEEE----CCCCHHHHHHHH---hcCCCEEE
Confidence 47899999999 999999975 4566666544222 223555543 446677888886 56787763
No 260
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=20.14 E-value=3.6e+02 Score=26.49 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeCCHHHHHHHHhc-c-CceEEEEeecccchhhhHHHHHHHHHHhHhcCCCcccccCC
Q 004721 563 NSVMEALGNAGYNKQTALKVMIQSTDSSVLMKLREK-T-SYELVYKVKENIRDALNQTIEDIKKFADSVVLSKESVYPLN 640 (733)
Q Consensus 563 ~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p-~~~~~~l~~~~~~~~~~~~l~~i~~~a~~i~~~~~~i~~~~ 640 (733)
..+++.+++..-. -+++++++.+.-...+++. | .+...++ .- | ....++.|.+.+.|.. .++...
T Consensus 38 ~~Li~~l~~~~p~----~~illT~~T~tg~~~~~~~~~~~v~~~~~-P~---D----~~~~~~rfl~~~~P~~-~i~~Et 104 (186)
T PF04413_consen 38 RPLIKRLRKQRPD----LRILLTTTTPTGREMARKLLPDRVDVQYL-PL---D----FPWAVRRFLDHWRPDL-LIWVET 104 (186)
T ss_dssp HHHHHHHTT---T----S-EEEEES-CCHHHHHHGG-GGG-SEEE-------S----SHHHHHHHHHHH--SE-EEEES-
T ss_pred HHHHHHHHHhCCC----CeEEEEecCCchHHHHHHhCCCCeEEEEe-Cc---c----CHHHHHHHHHHhCCCE-EEEEcc
Confidence 3444444443223 5899999988888777776 4 4444443 11 1 1335566777777632 333333
Q ss_pred ccccccchHHHHHHHHCCCcEEEEecCCcccccccccCCChHHHHHHHHhhcCcCEEEeCChHHHHHHHH
Q 004721 641 SAFITSATDIVQRLQSFKLPVYVETFSNEFVSQAWDFFSDPTVEINTYYEGAGIDGVITEFPMTAARYRS 710 (733)
Q Consensus 641 ~~~l~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~~~~~~d~~~e~~~~l~~~GVdgIiTD~P~~~~~~l~ 710 (733)
...|+++..++++|+++..=--.-.+.. ...|..=+ .-+..++ ..+|.|++=..+.+..+.+
T Consensus 105 ----ElWPnll~~a~~~~ip~~LvNarls~~s-~~~~~~~~-~~~r~~l--~~f~~i~aqs~~da~r~~~ 166 (186)
T PF04413_consen 105 ----ELWPNLLREAKRRGIPVVLVNARLSERS-FRRYRRFP-FLFRPLL--SRFDRILAQSEADAERFRK 166 (186)
T ss_dssp -------HHHHHH-----S-EEEEEE----------------HHHHHHG--GG-SEEEESSHHHHHHHHT
T ss_pred ----ccCHHHHHHHhhcCCCEEEEeeeecccc-chhhhhhH-HHHHHHH--HhCCEEEECCHHHHHHHHH
Confidence 2368999999999999865432222110 01111100 0233333 5688888888887777644
Done!