Query 004722
Match_columns 733
No_of_seqs 158 out of 764
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.4 0.035 1.2E-06 61.0 14.9 100 181-287 130-239 (511)
2 3gia_A Uncharacterized protein 96.3 0.019 6.4E-07 62.0 11.8 108 154-272 97-209 (444)
3 3l1l_A Arginine/agmatine antip 95.2 0.054 1.9E-06 58.3 9.4 106 157-271 100-211 (445)
4 3kcp_B Cellulosome anchoring p 20.7 26 0.00089 34.3 0.7 13 228-240 56-68 (187)
5 2bm3_A Type 2 cohesin, scaffol 20.3 27 0.00092 33.7 0.7 12 228-239 44-55 (166)
6 1nrp_R Receptor based peptide 19.8 33 0.0011 22.9 0.8 17 302-318 4-20 (26)
7 3bkd_A Transmembrane domain of 17.3 53 0.0018 22.2 1.3 15 44-58 8-22 (26)
8 3lbw_A M2 protein; proton chan 16.9 56 0.0019 21.6 1.3 15 44-58 5-19 (23)
9 2ljb_A M2 protein, BM2 protein 14.4 67 0.0023 23.3 1.3 18 44-61 12-29 (35)
10 1nro_R Receptor based peptide 12.7 61 0.0021 21.8 0.7 15 304-318 6-20 (27)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.45 E-value=0.035 Score=61.05 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=55.0
Q ss_pred EeehHHHHHHHHHHHhhhcccccccchhhH----HHHHHHHHHhhhhhhcccCCccee----eecCHHHHHHHHHhcCcc
Q 004722 181 TVLIASLMLVGLFALQHFGTHRVGFLFAPV----LLAWLLCISIVGFYNTVRWNPGVV----RALSPYYVYIFFKKAGKD 252 (733)
Q Consensus 181 vv~is~~ILv~LF~iQ~~GT~kvg~~FgPi----ml~Wf~~l~~~Gi~~i~~~~p~Vl----~AlnP~ya~~f~~~~~~~ 252 (733)
...+++++++++..+.-+|....+++..-. +++-++.+.++|+..+...+|.-+ ..+.|.+ .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456788888888999999998877654322 222344455667665554233211 1222221 1123
Q ss_pred eeeeecchhhhhcchhhhhcCCCCCC--Ccceeehhh
Q 004722 253 GWSSLGGVVLCVTGAEAMFADLGHFS--HLPIRIAFA 287 (733)
Q Consensus 253 ~~~~LG~v~L~iTG~EALyADmGHFg--~~~Ir~aw~ 287 (733)
+|..+..++.+.+|-|+.-.=-+-.- +|.+..+-.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 45567788899999998644333332 455555544
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.35 E-value=0.019 Score=62.02 Aligned_cols=108 Identities=17% Similarity=0.094 Sum_probs=58.2
Q ss_pred cccccchhhhhhhccccccccCCCCc-eEeehHHHHHHHHHHHhhhccccccc---chhhHHHHHHHHHHhhhhhhcccC
Q 004722 154 GILTPAMSVLSAINGIKVKATGLDEN-YTVLIASLMLVGLFALQHFGTHRVGF---LFAPVLLAWLLCISIVGFYNTVRW 229 (733)
Q Consensus 154 gviTPAiSVlSAVeGl~v~~p~~~~~-~vv~is~~ILv~LF~iQ~~GT~kvg~---~FgPiml~Wf~~l~~~Gi~~i~~~ 229 (733)
-+++.|....+..+-+....|...+. ....+++++++++..+.-+|....++ .+..+.++=++.+.+.|+.+.
T Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~--- 173 (444)
T 3gia_A 97 YVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI--- 173 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 34455655555555444333333221 23356788888888999999877665 455555555555555566543
Q ss_pred Ccceeee-cCHHHHHHHHHhcCcceeeeecchhhhhcchhhhhc
Q 004722 230 NPGVVRA-LSPYYVYIFFKKAGKDGWSSLGGVVLCVTGAEAMFA 272 (733)
Q Consensus 230 ~p~Vl~A-lnP~ya~~f~~~~~~~~~~~LG~v~L~iTG~EALyA 272 (733)
+|+-+.. ++|.-...+ +..+...+.+.+|-|+.-.
T Consensus 174 ~~~~~~~~~~~~g~~~~--------~~~~~~~~~a~~G~e~~~~ 209 (444)
T 3gia_A 174 HPSYVIPDLAPSAVSGM--------IFASAIFFLSYMGFGVITN 209 (444)
T ss_dssp CGGGTSCCCSHHHHHHH--------HHHHHHGGGGGTHHHHHHT
T ss_pred ChhhcCCCCCCcchHHH--------HHHHHHHHHHHHhHHHHHH
Confidence 3443322 333211111 1223445678899997643
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.16 E-value=0.054 Score=58.29 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=50.4
Q ss_pred ccchhhhhhhccccccccCCCCc-eEeehHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHhhhhhhcccCCcc
Q 004722 157 TPAMSVLSAINGIKVKATGLDEN-YTVLIASLMLVGLFALQHFGTHRVGFL---FAPVLLAWLLCISIVGFYNTVRWNPG 232 (733)
Q Consensus 157 TPAiSVlSAVeGl~v~~p~~~~~-~vv~is~~ILv~LF~iQ~~GT~kvg~~---FgPiml~Wf~~l~~~Gi~~i~~~~p~ 232 (733)
+.+....+..+=++...|...++ ....+++++++++..+--+|....+++ +.++.++=++.+.+.|+.+ .+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~~ 176 (445)
T 3l1l_A 100 GNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFW---FRGE 176 (445)
T ss_dssp HHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---CCCC
T ss_pred HHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChh
Confidence 33333444444444444543321 133467777777888888888777764 4444443333344444433 3454
Q ss_pred ee-eecCHHHHHHHHHhcCcce-eeeecchhhhhcchhhhh
Q 004722 233 VV-RALSPYYVYIFFKKAGKDG-WSSLGGVVLCVTGAEAMF 271 (733)
Q Consensus 233 Vl-~AlnP~ya~~f~~~~~~~~-~~~LG~v~L~iTG~EALy 271 (733)
.+ ..++|.-.- +..+ +..+..++.+.+|-|+.-
T Consensus 177 ~~~~~~~~~~~~------~~~~~~~~~~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 177 TYMAAWNVSGLG------TFGAIQSTLNVTLWSFIGVESAS 211 (445)
T ss_dssp CCCCC-----------------HHHHHHHHHHTTTTTTHHH
T ss_pred hcccccCccCCc------cHHHHHHHHHHHHHHHHhHHHHH
Confidence 43 334442100 0111 223344567788888653
No 4
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=20.71 E-value=26 Score=34.26 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=7.7
Q ss_pred cCCcceeeecCHH
Q 004722 228 RWNPGVVRALSPY 240 (733)
Q Consensus 228 ~~~p~Vl~AlnP~ 240 (733)
+|||+||+|+||.
T Consensus 56 KYDP~VLqaV~p~ 68 (187)
T 3kcp_B 56 VYDPKVLMAVDPE 68 (187)
T ss_dssp ECCTTTEEEECTT
T ss_pred eEChhHeeecccC
Confidence 4566666666654
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.31 E-value=27 Score=33.71 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=7.5
Q ss_pred cCCcceeeecCH
Q 004722 228 RWNPGVVRALSP 239 (733)
Q Consensus 228 ~~~p~Vl~AlnP 239 (733)
+|||+||+|+||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 456666666666
No 6
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=19.83 E-value=33 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=14.6
Q ss_pred chhhccCcCcccCcccc
Q 004722 302 AAFYTKHKEDLERSFFK 318 (733)
Q Consensus 302 gA~ll~~p~~~~npFf~ 318 (733)
-++|++||++.-.|||+
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 7
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=17.25 E-value=53 Score=22.22 Aligned_cols=15 Identities=33% Similarity=0.990 Sum_probs=13.2
Q ss_pred ccchhhhHHHHHHHH
Q 004722 44 DDEILGVFSLVFWTL 58 (733)
Q Consensus 44 ~~~v~G~lSlIfWtL 58 (733)
..+++|++-||.|-+
T Consensus 8 aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 8 AASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999999976
No 8
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=16.94 E-value=56 Score=21.60 Aligned_cols=15 Identities=27% Similarity=0.855 Sum_probs=13.0
Q ss_pred ccchhhhHHHHHHHH
Q 004722 44 DDEILGVFSLVFWTL 58 (733)
Q Consensus 44 ~~~v~G~lSlIfWtL 58 (733)
..+++|++-||.|-+
T Consensus 5 aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 5 AASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 368999999999976
No 9
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=14.42 E-value=67 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.739 Sum_probs=14.9
Q ss_pred ccchhhhHHHHHHHHHHh
Q 004722 44 DDEILGVFSLVFWTLTVI 61 (733)
Q Consensus 44 ~~~v~G~lSlIfWtL~li 61 (733)
..+|+|+|=||.|.+-=.
T Consensus 12 aA~IigiLHlilWildrL 29 (35)
T 2ljb_A 12 AASIIGILHFIAWTIGHL 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 478999999999997543
No 10
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=12.72 E-value=61 Score=21.75 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=0.0
Q ss_pred hhccCcCcccCcccc
Q 004722 304 FYTKHKEDLERSFFK 318 (733)
Q Consensus 304 ~ll~~p~~~~npFf~ 318 (733)
+|++||++.-.|||+
T Consensus 6 fllrnpndkyepfwe 20 (27)
T 1nro_R 6 FLLRNPNDKYEPFWE 20 (27)
T ss_pred ccccCCCcccCcccc
Done!