Query 004722
Match_columns 733
No_of_seqs 158 out of 764
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 03:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004722.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004722hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bm3a1 b.2.2.2 (A:5-166) Scaf 16.6 17 0.0013 32.7 0.7 11 229-239 41-51 (162)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 13.4 29 0.0021 26.0 1.1 41 291-333 14-54 (57)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 13.4 45 0.0033 20.9 1.8 20 462-481 5-24 (27)
4 d2yvxa3 f.57.1.1 (A:276-448) M 11.7 33 0.0024 31.0 1.1 116 292-420 12-129 (173)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 8.0 1.4E+02 0.01 23.7 3.6 26 560-585 57-82 (103)
6 d1jb0i_ f.23.17.1 (I:) Subunit 7.3 11 0.00083 25.9 -3.0 20 376-395 13-32 (38)
7 d1cs6a3 b.1.1.4 (A:209-299) Ax 5.8 2.2E+02 0.016 21.1 3.8 58 513-582 19-76 (91)
8 d2h9fa2 d.21.1.4 (A:187-395) H 5.4 1.9E+02 0.013 26.6 3.4 37 333-371 133-169 (209)
9 d1mkfa_ b.116.1.1 (A:) Viral c 5.4 52 0.0038 31.6 -0.6 20 24-49 280-299 (371)
10 d3cx5d2 f.23.11.1 (D:261-307) 4.7 2.5E+02 0.018 20.0 2.8 24 413-436 13-37 (47)
No 1
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=16.62 E-value=17 Score=32.66 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=5.1
Q ss_pred CCcceeeecCH
Q 004722 229 WNPGVVRALSP 239 (733)
Q Consensus 229 ~~p~Vl~AlnP 239 (733)
|||.||+|+||
T Consensus 41 YDP~vLQ~Vn~ 51 (162)
T d2bm3a1 41 YDPKVLMAVDP 51 (162)
T ss_dssp CCTTTEEEECT
T ss_pred eCHHHhccccc
Confidence 44444444444
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.44 E-value=29 Score=25.96 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=26.3
Q ss_pred hHHHHHhhcccchhhccCcCcccCcccccccccchHHHHHHHH
Q 004722 291 YPCLILAYMGEAAFYTKHKEDLERSFFKAIPEAVFWPVFIIAT 333 (733)
Q Consensus 291 ~P~LilnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~ilAt 333 (733)
+-++++--++=+.|+.++... |.-|.++|+.+.|-.+-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 334444445556667776543 33489999999998776544
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.42 E-value=45 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.674 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHhhhhhhhh
Q 004722 462 GWLPLVFSLVTLSIMCIWQY 481 (733)
Q Consensus 462 GW~pl~ia~i~~~iM~~W~~ 481 (733)
||+.|++-.--..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888877777777888854
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=11.66 E-value=33 Score=31.04 Aligned_cols=116 Identities=11% Similarity=0.124 Sum_probs=67.1
Q ss_pred HHHHHhhccc--chhhccCcCcccCcccccccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHcCCCcceeEEecC
Q 004722 292 PCLILAYMGE--AAFYTKHKEDLERSFFKAIPEAVFWPVFIIATLATAVASQAIISATFSIISQCRALSCFPRVKIMHTS 369 (733)
Q Consensus 292 P~LilnY~GQ--gA~ll~~p~~~~npFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~i~hTS 369 (733)
|-|++|.+|+ .|+++++-|+.-+-+-. =..+.|+ ++-++.-++||+. +++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---HH
Confidence 4455555555 45666654443332111 1246665 5667888899986 4788999999643211 11
Q ss_pred CcccCceeehhhHHHHHHHhheeEEEecCchhhhhhhcceehhHHHHHHHH
Q 004722 370 NQIHGQIYIPEMNWILMIFCLGVVVGFRDTDMIANAYGLAVITVMFVTTCL 420 (733)
Q Consensus 370 ~~~~GQIYiP~vNw~L~i~~i~vv~~F~~s~~l~~AYGiaV~~~m~iTT~L 420 (733)
+...-++.+-.+|=+.+...+.....+.+...++.+=|++...+|.+.+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 223455777778876666555555555555556555555555555555544
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.01 E-value=1.4e+02 Score=23.65 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCccEEEEEEEEeee
Q 004722 560 NQQFHVSRIGPQEFHFFHCIVRYGYK 585 (733)
Q Consensus 560 eeR~~v~~l~~~~~g~yRv~lryGYm 585 (733)
+..+.+..+...+.|.|+|+++..|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45677788877788999999988664
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=7.26 E-value=11 Score=25.89 Aligned_cols=20 Identities=25% Similarity=0.737 Sum_probs=15.4
Q ss_pred eeehhhHHHHHHHhheeEEE
Q 004722 376 IYIPEMNWILMIFCLGVVVG 395 (733)
Q Consensus 376 IYiP~vNw~L~i~~i~vv~~ 395 (733)
|.||.+-|++-+.++.+...
T Consensus 13 I~iPvv~wl~p~vvMglLFi 32 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhe
Confidence 78999999988877765443
No 7
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.83 E-value=2.2e+02 Score=21.08 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=33.6
Q ss_pred cceEEEEeCCCCCChhhhHhhhhcCCccceEEEEEEeeeecccccCCCceEEEEEecCCCccEEEEEEEE
Q 004722 513 PGICLIYSNVISGVPPMFAHFVTNFPAFHQILIFVTLQSLTVPYVPLNQQFHVSRIGPQEFHFFHCIVRY 582 (733)
Q Consensus 513 pG~avf~t~~~~~iP~~~~h~l~~~~~lhe~~VfltV~~~~vP~V~~eeR~~v~~l~~~~~g~yRv~lry 582 (733)
.|-.+-++=...+.|+.-.+..+.+.. ....+...+..+.+..+...+.|.|+|++.=
T Consensus 19 ~G~~v~l~C~~~g~P~p~i~W~k~~~~------------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 76 (91)
T d1cs6a3 19 TGQMVTLECFAFGNPVPQIKWRKLDGS------------QTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 76 (91)
T ss_dssp TTCCEEEECEEEEESCCEEEEEECCSC------------CSCCCSBSSSEEEECSCCGGGCEEEEEEEEE
T ss_pred cCCcEEEEEEEEEccCCEEEEEecccc------------cceEeeeeeeEEEeCCCCccCCEEEEEEEEE
Confidence 444455544445555444444443322 1122334455688888888888999999973
No 8
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.42 E-value=1.9e+02 Score=26.55 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHcCCCcceeEEecCCc
Q 004722 333 TLATAVASQAIISATFSIISQCRALSCFPRVKIMHTSNQ 371 (733)
Q Consensus 333 tlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~i~hTS~~ 371 (733)
|.|--+|+=|.|-| |+.+|+..-+-=..++|-|.|-.
T Consensus 133 Tgav~la~Aa~ipG--Tv~~~~~~~~~~~~v~I~HPsG~ 169 (209)
T d2h9fa2 133 TAAVAIGTAAAIPG--TLVNLAAGGGERSAVRFGHPSGT 169 (209)
T ss_dssp HHHHHHHHHHHSTT--SHHHHHTTSSCCSEEEEEETTEE
T ss_pred HHHHHHHHhhccCC--chHHhhcCCCCCCeEEEEcCCce
Confidence 56666777788888 56787766555445888887753
No 9
>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]}
Probab=5.38 E-value=52 Score=31.59 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=0.0
Q ss_pred cchhhhhhhccCCCCCCCCCccchhh
Q 004722 24 ISPIYVYKSTFSGKLRSHEEDDEILG 49 (733)
Q Consensus 24 TSPLY~~~~~f~~~~~~~~~~~~v~G 49 (733)
|||+||+.+-|.. +.+|+.|
T Consensus 280 ~~P~YVm~~YF~S------t~~N~~~ 299 (371)
T d1mkfa_ 280 TSPVYVMAAYFDS------THENPVR 299 (371)
T ss_dssp CSCEEEEEEEECC------CCCCTTS
T ss_pred cCceeEEEEeecc------cccCccC
No 10
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.67 E-value=2.5e+02 Score=19.97 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHhcchhHH
Q 004722 413 VMFVTTCLMFLII-VMVWKRKVLVA 436 (733)
Q Consensus 413 ~m~iTT~L~~~v~-~~~w~~~~~~~ 436 (733)
+|++.++|+.+.. ...|+|..+..
T Consensus 13 ~~~i~s~l~~~~~y~KR~kWs~lKs 37 (47)
T d3cx5d2 13 TVIILSSLYLLSIWVKKFKWAGIKT 37 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Done!