Query 004724
Match_columns 733
No_of_seqs 468 out of 2535
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 11:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 2E-76 4.4E-81 645.7 35.3 394 80-486 13-410 (545)
2 cd02661 Peptidase_C19E A subfa 100.0 6E-57 1.3E-61 481.2 28.3 303 179-484 1-304 (304)
3 cd02663 Peptidase_C19G A subfa 100.0 5.4E-57 1.2E-61 483.7 27.5 279 181-484 1-300 (300)
4 cd02660 Peptidase_C19D A subfa 100.0 1E-56 2.3E-61 486.2 29.0 298 180-484 1-328 (328)
5 cd02668 Peptidase_C19L A subfa 100.0 6.4E-56 1.4E-60 480.3 28.8 288 181-484 1-324 (324)
6 cd02664 Peptidase_C19H A subfa 100.0 1.9E-55 4.1E-60 477.3 26.3 274 181-484 1-327 (327)
7 cd02671 Peptidase_C19O A subfa 100.0 4.9E-55 1.1E-59 474.0 26.6 275 178-484 23-332 (332)
8 cd02667 Peptidase_C19K A subfa 100.0 5.4E-55 1.2E-59 463.6 24.0 246 181-484 1-279 (279)
9 cd02657 Peptidase_C19A A subfa 100.0 2.3E-54 5E-59 463.5 26.8 283 181-484 1-305 (305)
10 cd02659 peptidase_C19C A subfa 100.0 1.2E-52 2.5E-57 455.8 29.0 292 179-487 2-333 (334)
11 cd02658 Peptidase_C19B A subfa 100.0 7.3E-53 1.6E-57 453.3 26.1 275 181-484 1-311 (311)
12 cd02669 Peptidase_C19M A subfa 100.0 3.3E-52 7.2E-57 468.3 25.5 292 178-484 118-440 (440)
13 COG5560 UBP12 Ubiquitin C-term 100.0 5.8E-52 1.3E-56 453.0 14.5 307 178-487 264-823 (823)
14 COG5533 UBP5 Ubiquitin C-termi 100.0 9.4E-49 2E-53 398.3 20.6 299 176-486 68-414 (415)
15 cd02662 Peptidase_C19F A subfa 100.0 2.4E-48 5.1E-53 404.1 22.6 210 181-484 1-240 (240)
16 COG5077 Ubiquitin carboxyl-ter 100.0 3E-48 6.6E-53 429.3 7.1 329 150-502 168-527 (1089)
17 cd02674 Peptidase_C19R A subfa 100.0 2.1E-45 4.6E-50 377.6 20.2 220 181-484 1-230 (230)
18 KOG1868 Ubiquitin C-terminal h 100.0 1.2E-45 2.6E-50 421.2 12.4 316 173-491 295-651 (653)
19 KOG1866 Ubiquitin carboxyl-ter 100.0 1.6E-45 3.6E-50 407.7 5.4 303 177-495 93-443 (944)
20 cd02666 Peptidase_C19J A subfa 100.0 2.3E-43 4.9E-48 383.1 19.2 271 179-484 1-343 (343)
21 PF00443 UCH: Ubiquitin carbox 100.0 2.6E-43 5.6E-48 365.1 15.5 249 179-483 1-269 (269)
22 cd02665 Peptidase_C19I A subfa 100.0 2.2E-42 4.8E-47 354.3 17.3 217 181-484 1-228 (228)
23 cd02673 Peptidase_C19Q A subfa 100.0 4.8E-42 1E-46 357.1 20.1 238 182-484 2-245 (245)
24 KOG0944 Ubiquitin-specific pro 100.0 2.9E-41 6.3E-46 372.5 17.7 287 179-487 307-763 (763)
25 KOG1867 Ubiquitin-specific pro 100.0 2E-41 4.2E-46 380.4 16.7 307 177-489 159-487 (492)
26 cd02257 Peptidase_C19 Peptidas 100.0 5.4E-40 1.2E-44 335.0 21.7 235 181-484 1-255 (255)
27 KOG1873 Ubiquitin-specific pro 100.0 4E-39 8.6E-44 358.4 9.7 306 177-486 203-877 (877)
28 cd02672 Peptidase_C19P A subfa 100.0 4E-38 8.6E-43 331.9 13.3 241 168-484 6-268 (268)
29 KOG4598 Putative ubiquitin-spe 100.0 3.2E-39 6.8E-44 353.9 4.3 275 175-491 83-446 (1203)
30 COG5207 UBP14 Isopeptidase T [ 100.0 2.4E-36 5.1E-41 323.4 16.4 289 179-485 303-748 (749)
31 KOG1863 Ubiquitin carboxyl-ter 100.0 1.1E-36 2.4E-41 372.0 14.1 308 171-496 162-495 (1093)
32 KOG1870 Ubiquitin C-terminal h 100.0 8.2E-37 1.8E-41 365.0 12.1 305 178-487 245-842 (842)
33 PF13423 UCH_1: Ubiquitin carb 100.0 1.4E-32 3.1E-37 294.2 21.7 277 180-465 1-295 (295)
34 cd02670 Peptidase_C19N A subfa 100.0 2E-32 4.4E-37 283.0 15.6 195 181-484 1-241 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 6.4E-32 1.4E-36 308.1 15.5 306 180-487 233-573 (587)
36 KOG1871 Ubiquitin-specific pro 100.0 1.2E-29 2.6E-34 267.2 15.0 304 177-487 26-420 (420)
37 KOG1872 Ubiquitin-specific pro 100.0 1.6E-30 3.4E-35 280.5 6.4 294 178-486 104-469 (473)
38 KOG2026 Spindle pole body prot 99.9 1.8E-24 3.9E-29 227.2 11.9 279 180-486 135-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 1.7E-18 3.7E-23 197.2 17.8 303 168-483 490-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.9 3.5E-09 7.5E-14 108.0 10.1 222 183-464 6-252 (275)
41 PF01753 zf-MYND: MYND finger; 98.7 3.6E-09 7.8E-14 77.8 -0.4 37 73-110 1-37 (37)
42 KOG1710 MYND Zn-finger and ank 98.1 2.6E-07 5.6E-12 95.5 -2.5 45 68-113 317-362 (396)
43 KOG3556 Familial cylindromatos 97.3 0.00012 2.6E-09 81.1 1.9 97 180-278 369-471 (724)
44 KOG1864 Ubiquitin-specific pro 96.8 0.0021 4.5E-08 75.1 6.4 100 182-281 34-152 (587)
45 KOG3612 PHD Zn-finger protein 95.9 0.0022 4.8E-08 72.0 0.0 42 72-116 529-570 (588)
46 KOG2061 Uncharacterized MYND Z 94.2 0.024 5.3E-07 61.5 2.0 45 70-114 136-180 (362)
47 KOG2857 Predicted MYND Zn-fing 94.0 0.086 1.9E-06 49.7 5.0 38 71-114 6-46 (157)
48 KOG1887 Ubiquitin carboxyl-ter 93.5 0.014 3.1E-07 68.7 -1.3 210 262-486 548-790 (806)
49 PF08715 Viral_protease: Papai 92.1 2 4.4E-05 46.8 12.7 73 182-278 105-178 (320)
50 PF04438 zf-HIT: HIT zinc fing 91.4 0.064 1.4E-06 37.6 0.2 27 71-98 3-29 (30)
51 KOG3362 Predicted BBOX Zn-fing 90.2 0.12 2.6E-06 48.9 1.0 37 67-104 115-151 (156)
52 PF13824 zf-Mss51: Zinc-finger 89.1 0.082 1.8E-06 42.2 -0.8 45 72-117 1-49 (55)
53 PLN03158 methionine aminopepti 87.7 0.18 3.9E-06 56.7 0.3 41 69-110 8-55 (396)
54 PF05408 Peptidase_C28: Foot-a 87.6 0.28 6E-06 48.6 1.5 50 429-490 130-179 (193)
55 KOG4317 Predicted Zn-finger pr 75.0 2 4.3E-05 45.9 2.4 38 69-112 6-44 (383)
56 PF05408 Peptidase_C28: Foot-a 60.4 19 0.00041 36.1 5.6 22 180-201 34-55 (193)
57 PRK01343 zinc-binding protein; 59.5 7.8 0.00017 31.4 2.3 28 69-101 8-35 (57)
58 KOG1871 Ubiquitin-specific pro 55.2 6.9 0.00015 43.3 1.8 38 174-211 173-210 (420)
59 PF10013 DUF2256: Uncharacteri 46.8 6.2 0.00014 29.8 -0.1 31 69-99 7-40 (42)
60 COG3478 Predicted nucleic-acid 45.9 17 0.00037 30.1 2.2 35 359-393 3-39 (68)
61 COG4338 Uncharacterized protei 40.5 3.4 7.4E-05 32.0 -2.3 31 68-98 10-43 (54)
62 KOG2858 Uncharacterized conser 35.9 16 0.00035 40.0 0.9 36 67-103 14-50 (390)
63 PF02099 Josephin: Josephin; 33.3 51 0.0011 32.4 3.9 32 428-467 99-130 (157)
64 PF14353 CpXC: CpXC protein 32.5 36 0.00078 31.8 2.6 48 313-371 2-49 (128)
65 PLN03144 Carbon catabolite rep 29.0 24 0.00052 42.0 0.9 40 70-110 59-109 (606)
66 PF09889 DUF2116: Uncharacteri 24.3 21 0.00045 29.2 -0.5 30 69-104 2-31 (59)
67 PF12855 Ecl1: Life-span regul 23.3 25 0.00054 26.9 -0.2 31 71-104 7-37 (43)
68 PF09855 DUF2082: Nucleic-acid 22.2 63 0.0014 26.9 2.0 33 361-393 1-35 (64)
69 KOG2935 Ataxin 3/Josephin [Gen 22.1 22 0.00047 37.2 -0.9 55 429-491 104-166 (315)
70 KOG4215 Hepatocyte nuclear fac 21.4 34 0.00074 37.7 0.3 24 66-89 15-44 (432)
71 PF10748 DUF2531: Protein of u 21.3 1E+02 0.0022 29.4 3.4 32 424-463 34-65 (132)
72 PF09297 zf-NADH-PPase: NADH p 21.1 41 0.00089 23.7 0.5 23 70-92 3-32 (32)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-76 Score=645.74 Aligned_cols=394 Identities=47% Similarity=0.827 Sum_probs=349.1
Q ss_pred ccccCccCCCCccccccccccccccccccccccccccCCCCCCCCCccccccCCCCC---CccccccccCCCCCccccCC
Q 004724 80 GSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKINSVQGPRSDFGSKISSTGGK---NFSGIALVPTHGTSKVIKKP 156 (733)
Q Consensus 80 ~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~~~~~~~~~~~g~KaS~~G~k---s~s~i~lvP~~~~s~~~~~p 156 (733)
...+|++| ++..++..||..++...|.........+..........+..+++ +.......+.........+|
T Consensus 13 s~~~~s~~-----ss~~v~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~r~s~~~~~~~~~~~~~p 87 (545)
T KOG1865|consen 13 STTRCSRC-----SSESVNEGDMSFSSNRKCNEDQINSFSPLRSPRPDAAFSESQRKSGSPKSRLSNETRVDSDDGNAPP 87 (545)
T ss_pred cccccccc-----ccccccccccccccccccccccccccCcccCCCCccccccccCccCCCCCCCccccccccCCCcCCc
Confidence 45678888 88999999999988888865543222221111111111111111 11222333333445677889
Q ss_pred CccccCchhhhhcccCCCCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhc
Q 004724 157 REILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKAS 236 (733)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~ 236 (733)
++.|||++.+. +.|.++...|+||+|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++.+..
T Consensus 88 ~k~Lfp~e~~~--~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~ 165 (545)
T KOG1865|consen 88 AKVLFPYEKLP--LSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL 165 (545)
T ss_pred chhccccceec--ccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh
Confidence 99999999987 8999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCC-CCChHHHHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEe
Q 004724 237 QSSH-PFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVIC 315 (733)
Q Consensus 237 ~s~~-~isP~~ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C 315 (733)
.+.. +++|..|+..|+.++.+|+.|+|+||||||++++|.|+..|+ ++....++..+++++|+++|+|.++++++|
T Consensus 166 ~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL---~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC 242 (545)
T KOG1865|consen 166 HNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL---PGHKQVDPRSQDTTLVHQIFGGYLRSQIKC 242 (545)
T ss_pred cCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc---CCCccCCcccccceehhhhhccchhhceec
Confidence 7665 999999999999999999999999999999999999999987 677778888999999999999999999999
Q ss_pred CCCCCccccccccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC
Q 004724 316 SKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG 395 (733)
Q Consensus 316 ~~C~~~s~~~E~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~ 395 (733)
..|.+++.++|+.++|+|+|. +..+|+++|++|++.|.|+|+|+|+|++|++++.|.|+++|.++|+||+||||||+.+
T Consensus 243 ~~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~ 321 (545)
T KOG1865|consen 243 LHCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNG 321 (545)
T ss_pred ccCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccC
Confidence 999999999999999999999 7899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEecCCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhcC
Q 004724 396 RFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLS 475 (733)
Q Consensus 396 ~~~Ki~~~V~FP~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl~ 475 (733)
+..||++.|.||+.|||.+||+.+...+..|.|||||+|.|.. .++|||+||||...|+||+|||+.|+.++.+.|++
T Consensus 322 ~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~--~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLs 399 (545)
T KOG1865|consen 322 TGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTS--CHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLS 399 (545)
T ss_pred cccccccccCCcccccccccccCCCCCCceEEEEEEEEecccc--ccCCceEEEEEcCCCceEEccCceeeeccccceec
Confidence 9999999999999999999999887789999999999999986 56799999999999999999999999999999999
Q ss_pred CCcEEEEEEEc
Q 004724 476 QGAYMLLYNRV 486 (733)
Q Consensus 476 ~~AYiLfY~R~ 486 (733)
++||||||.|.
T Consensus 400 q~AYmLfY~R~ 410 (545)
T KOG1865|consen 400 QQAYILFYARK 410 (545)
T ss_pred ccceEEEEEee
Confidence 99999999997
No 2
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6e-57 Score=481.24 Aligned_cols=303 Identities=54% Similarity=0.914 Sum_probs=270.2
Q ss_pred CCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhcc-CCCCCChHHHHhhccccCCC
Q 004724 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQ-SSHPFSPMSILSRLPNIGGN 257 (733)
Q Consensus 179 p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~-s~~~isP~~ll~~L~~~~~~ 257 (733)
|+||.|+||||||||+||+|+++|+|++++++..+...+.....+++++|+.++.++.. +...+.|..|..++..+.+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 69999999999999999999999999999987665555555567899999999988764 46678999999999999899
Q ss_pred CCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccC
Q 004724 258 LGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHG 337 (733)
Q Consensus 258 f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~ 337 (733)
|..+.||||+|||.+||+.|++++.................+++.++|+|++.+.++|..|++.+.+.++|+.|+|++++
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999988765433222112233456799999999999999999999999999999999999985
Q ss_pred CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCccccccceEecCCcCCCCCCcC
Q 004724 338 DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMS 417 (733)
Q Consensus 338 ~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~~~Ki~~~V~FP~~LdL~~~~~ 417 (733)
..+|+++|+.++.+|.++++++|.|++|+++..+.++..|.++|++|+|||+||.++...|+++.|.||..|||.+|+.
T Consensus 161 -~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~ 239 (304)
T cd02661 161 -ADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS 239 (304)
T ss_pred -CCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccc
Confidence 4899999999999999999999999999999999999999999999999999999776689999999999999999998
Q ss_pred CCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhcCCCcEEEEEE
Q 004724 418 DGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYN 484 (733)
Q Consensus 418 ~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~ 484 (733)
.+......|+|+|||+|.|.... +|||++|+|..+++||+|||+.|+++++++|++..||||||.
T Consensus 240 ~~~~~~~~Y~L~~vi~H~G~~~~--~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 240 QPNDGPLKYKLYAVLVHSGFSPH--SGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred cCCCCCceeeEEEEEEECCCCCC--CcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 76677889999999999998632 399999999888999999999999999999999999999994
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-57 Score=483.70 Aligned_cols=279 Identities=34% Similarity=0.571 Sum_probs=246.0
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCC---CCCChHHHHhhccccCCC
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSS---HPFSPMSILSRLPNIGGN 257 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~---~~isP~~ll~~L~~~~~~ 257 (733)
||.|+||||||||+||+|++ .+++++|+.+|..|+.+. ..++|..|+.+|+...+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 89999999999999999987 348889999999997643 468999999999998899
Q ss_pred CCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCC------CCCCCcccccccceeceeEEeEEEeCCCCCccccccccccc
Q 004724 258 LGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKA------VPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDL 331 (733)
Q Consensus 258 f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~------~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L 331 (733)
|..++||||||||..|||.|++++......... ........++|.++|+|++.+.++|..|++.+.+.|+|++|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 999999999999999999999988644321111 11123456789999999999999999999999999999999
Q ss_pred hhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC----ccccccceEecC
Q 004724 332 TVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG----RFGKLNKRVTFP 407 (733)
Q Consensus 332 ~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~Ki~~~V~FP 407 (733)
+|+|++ ..+|+++|+.|+.+|.++++++|.|++|++++.++|+..|.++|+||+|||+||.++ +..|++++|.||
T Consensus 140 sl~i~~-~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp 218 (300)
T cd02663 140 SIDVEQ-NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFP 218 (300)
T ss_pred ccCCCC-cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecC
Confidence 999985 689999999999999999999999999999999999999999999999999999864 357999999999
Q ss_pred CcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhc--------CCCcE
Q 004724 408 ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVL--------SQGAY 479 (733)
Q Consensus 408 ~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl--------~~~AY 479 (733)
..|+|..+..........|+|+|||+|.|.... +|||+||+|. +++||+|||+.|+++++++|. +.+||
T Consensus 219 ~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~--~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aY 295 (300)
T cd02663 219 LELRLFNTTDDAENPDRLYELVAVVVHIGGGPN--HGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAY 295 (300)
T ss_pred cEEeccccccccCCCCeEEEEEEEEEEecCCCC--CCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceE
Confidence 999999886555556689999999999997322 3999999998 899999999999999999986 57899
Q ss_pred EEEEE
Q 004724 480 MLLYN 484 (733)
Q Consensus 480 iLfY~ 484 (733)
||||+
T Consensus 296 iLfY~ 300 (300)
T cd02663 296 VLFYQ 300 (300)
T ss_pred EEEeC
Confidence 99995
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-56 Score=486.23 Aligned_cols=298 Identities=34% Similarity=0.628 Sum_probs=260.5
Q ss_pred CCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCc--cCCCCchHHHHHHHHHHHHhccC--CCCCChHHHHhhccccC
Q 004724 180 CGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRK--ECGRDDWCFLCEFQTHVEKASQS--SHPFSPMSILSRLPNIG 255 (733)
Q Consensus 180 ~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~--~~~~~~~~~l~~L~~lf~~l~~s--~~~isP~~ll~~L~~~~ 255 (733)
+||.|+||||||||+||+|+++|+|+++|+...+.. .......+++++|+.+|..+..+ ...+.|..++.+++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 699999999999999999999999999999876543 22344568999999999999533 45789999999998888
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhc
Q 004724 256 GNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEI 335 (733)
Q Consensus 256 ~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I 335 (733)
+.|..+.||||+|||.+||+.|++++...... ........++|.++|+|++.+.++|..|++.+.+.++|+.|+|+|
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i 157 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE---ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDI 157 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhccccc---ccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeec
Confidence 88999999999999999999999887543221 111123357899999999999999999999999999999999999
Q ss_pred cCC--------------cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc---cc
Q 004724 336 HGD--------------AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR---FG 398 (733)
Q Consensus 336 ~~~--------------~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~---~~ 398 (733)
+.. ..+|+++|+.|+.+|.+++.+ |+|++|+.++.+.|+..|.++|++|+|||+||.++. ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~ 236 (328)
T cd02660 158 PNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSR 236 (328)
T ss_pred cccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCc
Confidence 753 289999999999999998877 999999999999999999999999999999998654 47
Q ss_pred cccceEecCCcCCCCCCcCC---------CCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeec
Q 004724 399 KLNKRVTFPETLDLSPYMSD---------GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVD 469 (733)
Q Consensus 399 Ki~~~V~FP~~LdL~~~~~~---------~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~ 469 (733)
|+++.|.||..|||.+|+.. .......|+|+|||+|.|+..+ |||++|+|..+++||+|||+.|++++
T Consensus 237 K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~---GHY~~~~~~~~~~W~~~nD~~V~~~~ 313 (328)
T cd02660 237 KIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDT---GHYTAYCRQGDGQWFKFDDAMITRVS 313 (328)
T ss_pred CCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCC---CcEEEEEECCCCcEEEEECCeeEECC
Confidence 99999999999999999874 2345678999999999997544 99999999877999999999999999
Q ss_pred hhhhcCCCcEEEEEE
Q 004724 470 LEEVLSQGAYMLLYN 484 (733)
Q Consensus 470 ~e~vl~~~AYiLfY~ 484 (733)
+++|+..+||||||.
T Consensus 314 ~~~v~~~~ayil~Y~ 328 (328)
T cd02660 314 EEEVLKSQAYLLFYH 328 (328)
T ss_pred HHHhcCCCcEEEEeC
Confidence 999999999999994
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.4e-56 Score=480.31 Aligned_cols=288 Identities=28% Similarity=0.523 Sum_probs=250.1
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCcc---------CCCCchHHHHHHHHHHHHhccC-CCCCChHHHHhh
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKE---------CGRDDWCFLCEFQTHVEKASQS-SHPFSPMSILSR 250 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~---------~~~~~~~~l~~L~~lf~~l~~s-~~~isP~~ll~~ 250 (733)
||.|+||||||||+||+|+++|+|+++++....... ......+++++|+.+|..|+.+ ...++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999987654321 0112357999999999999755 467899999998
Q ss_pred ccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCcccccccccc
Q 004724 251 LPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMD 330 (733)
Q Consensus 251 L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~ 330 (733)
+. +..++||||+|||.+||+.|++++.... .....++|.++|+|++...++|..|++.+.+.|+|+.
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~--------~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~ 147 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSK--------NPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYE 147 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhcc--------CCcccchhhhhcceEEEEEEEeCCCCCccccccccEE
Confidence 84 5678999999999999999998764321 1123578999999999999999999999999999999
Q ss_pred chhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC----ccccccceEec
Q 004724 331 LTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG----RFGKLNKRVTF 406 (733)
Q Consensus 331 L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~Ki~~~V~F 406 (733)
|+|+|++ ..+|+++|+.|+.+|.++++++|.|++|++++.+.|+..|.++|+||+|||+||.++ ...|+++.|.|
T Consensus 148 l~l~i~~-~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~f 226 (324)
T cd02668 148 LELQLKG-HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISF 226 (324)
T ss_pred EEEEecc-cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEEC
Confidence 9999985 589999999999999999999999999999999999999999999999999999864 34799999999
Q ss_pred CCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEeCCceeeechhhh------------
Q 004724 407 PETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF-RGHWYRVDDCKVTSVDLEEV------------ 473 (733)
Q Consensus 407 P~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~-~g~W~~fnDs~V~~v~~e~v------------ 473 (733)
|..|||.+|+.....+...|+|+|||+|.|... ++|||+||+|+. +++||+|||+.|++++++.+
T Consensus 227 p~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~--~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~ 304 (324)
T cd02668 227 PEILDMGEYLAESDEGSYVYELSGVLIHQGVSA--YSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPR 304 (324)
T ss_pred CCeEechhhcccccCCCcEEEEEEEEEEcCCCC--CCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhccccccccccc
Confidence 999999999977666778999999999999742 239999999984 48999999999999988766
Q ss_pred ---------cCCCcEEEEEE
Q 004724 474 ---------LSQGAYMLLYN 484 (733)
Q Consensus 474 ---------l~~~AYiLfY~ 484 (733)
.+..||||||+
T Consensus 305 ~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 305 KSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccCCCccccCceEEEEeC
Confidence 24579999995
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-55 Score=477.32 Aligned_cols=274 Identities=31% Similarity=0.529 Sum_probs=238.0
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccC-CCCCChHH-HHhhccccCCCC
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQS-SHPFSPMS-ILSRLPNIGGNL 258 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s-~~~isP~~-ll~~L~~~~~~f 258 (733)
||.|+||||||||+||+|+++|+||+++++...... .....++.+|+.+|..|..+ ..++.|.. ++..+. .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~--~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL--GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc--CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 899999999999999999999999999998765322 12345788999999888654 45666765 666654 3678
Q ss_pred CCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccCC
Q 004724 259 GYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGD 338 (733)
Q Consensus 259 ~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~~ 338 (733)
..++||||||||..||+.|+ ++|.++|+|++.+.++|..|++.+.+.|+|..|+|+|+
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~--------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-- 134 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLH--------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHH--------------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC--
Confidence 88999999999999999997 25889999999999999999999999999999999986
Q ss_pred cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc----cccccceEecCCcCCCCC
Q 004724 339 AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR----FGKLNKRVTFPETLDLSP 414 (733)
Q Consensus 339 ~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~----~~Ki~~~V~FP~~LdL~~ 414 (733)
+|+++|+.|+.+|.++++++|+|++|++++.+.|+..|.++|+||+|||+||.++. ..|++++|.||..|||..
T Consensus 135 --sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~ 212 (327)
T cd02664 135 --SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPV 212 (327)
T ss_pred --CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCc
Confidence 89999999999999999999999999999999999999999999999999998643 369999999999999998
Q ss_pred CcCC-------------------CCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCC---------------------
Q 004724 415 YMSD-------------------GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFR--------------------- 454 (733)
Q Consensus 415 ~~~~-------------------~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~--------------------- 454 (733)
++.. .......|+|+|||+|.|... ++|||+||+|...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~--~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~ 290 (327)
T cd02664 213 RVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSS--ESGHYFTYARDQTDADSTGQECPEPKDAEENDES 290 (327)
T ss_pred cccccccccccccccccccccccccCCCceEEEEEEEEEccCCC--CCcceEEEEecCCccccccccccccccccccCCC
Confidence 8631 112456899999999999742 2399999999754
Q ss_pred CCEEEEeCCceeeechhhhcC-------CCcEEEEEE
Q 004724 455 GHWYRVDDCKVTSVDLEEVLS-------QGAYMLLYN 484 (733)
Q Consensus 455 g~W~~fnDs~V~~v~~e~vl~-------~~AYiLfY~ 484 (733)
++||+|||+.|+.+++++|.+ .+||||||+
T Consensus 291 ~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 291 KNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 789999999999999999986 799999995
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.9e-55 Score=474.01 Aligned_cols=275 Identities=27% Similarity=0.471 Sum_probs=231.4
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCC
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGN 257 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~ 257 (733)
+++||.|+||||||||+||+|+++|+|++.++..............+...|+.++.. ......|..|+..++...+.
T Consensus 23 ~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~q~~~~~l~~~~~~---~~~~~~P~~~~~~l~~~~~~ 99 (332)
T cd02671 23 PFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYND---ELANQAPRRLLNALREVNPM 99 (332)
T ss_pred CCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccCcHHHHHHHHHHHHHHHhh---cccccCHHHHHHHHHHhccc
Confidence 459999999999999999999999999999976542111100001111122222222 22345699999999999999
Q ss_pred CCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccC
Q 004724 258 LGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHG 337 (733)
Q Consensus 258 f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~ 337 (733)
|..++||||+|||..||+.|++ +|.++|+|++.++++|..|++.+.+.|+|++|+|+|++
T Consensus 100 f~~~~QQDA~EFl~~LLd~L~~--------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~ 159 (332)
T cd02671 100 YEGYLQHDAQEVLQCILGNIQE--------------------LVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQE 159 (332)
T ss_pred cCCccccCHHHHHHHHHHHHHH--------------------HHHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCC
Confidence 9999999999999999999973 47889999999999999999999999999999999985
Q ss_pred Cc------------------ccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeec-----
Q 004724 338 DA------------------ASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQS----- 394 (733)
Q Consensus 338 ~~------------------~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~----- 394 (733)
.. .+|+++|+.|+.+|.++|+++|+|++|++++.++|+..|.++|+||+|||+||.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~ 239 (332)
T cd02671 160 SELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEF 239 (332)
T ss_pred CcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccc
Confidence 32 5899999999999999999999999999999999999999999999999999984
Q ss_pred ---CccccccceEecCCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechh
Q 004724 395 ---GRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLE 471 (733)
Q Consensus 395 ---~~~~Ki~~~V~FP~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e 471 (733)
+...|++++|.||..|+|.++.... ....|+|+|||+|.|...+ +|||+||+| ||+|||+.|+.++++
T Consensus 240 ~~~~~~~Ki~~~v~fp~~L~~~~~~~~~--~~~~Y~L~~VI~H~G~~~~--~GHY~a~vr-----W~~fdD~~V~~~~~~ 310 (332)
T cd02671 240 DCYGGLSKVNTPLLTPLKLSLEEWSTKP--KNDVYRLFAVVMHSGATIS--SGHYTAYVR-----WLLFDDSEVKVTEEK 310 (332)
T ss_pred cccCCceecCccccCccccccccccCCC--CCCeEEEEEEEEEcCCCCC--CCeEEEEEE-----EEEEcCcceEEccHH
Confidence 3457999999999999998876543 4578999999999996432 399999999 999999999999988
Q ss_pred hhc---------CCCcEEEEEE
Q 004724 472 EVL---------SQGAYMLLYN 484 (733)
Q Consensus 472 ~vl---------~~~AYiLfY~ 484 (733)
++. ..+||||||+
T Consensus 311 ~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 311 DFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred HHHhhcCCCCCCCCceEEEEEC
Confidence 875 2589999995
No 8
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-55 Score=463.60 Aligned_cols=246 Identities=39% Similarity=0.755 Sum_probs=222.9
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCCCC
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGY 260 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f~~ 260 (733)
||.|+||||||||+||+|+++|+|++++++ +|..|+..+....+.|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~ 48 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKG 48 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcC
Confidence 899999999999999999999999999986 566666667666677889
Q ss_pred CCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccC---
Q 004724 261 GRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHG--- 337 (733)
Q Consensus 261 g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~--- 337 (733)
++||||+|||..||+.|+ ++|.++|+|++.+.++|..|++.+.+.|+|+.|+|+++.
T Consensus 49 ~~QqDA~Efl~~lld~l~--------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~ 108 (279)
T cd02667 49 YQQQDSHELLRYLLDGLR--------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIK 108 (279)
T ss_pred CchhhHHHHHHHHHHHHH--------------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccC
Confidence 999999999999999997 358899999999999999999999999999999998753
Q ss_pred CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC---ccccccceEecCCcCCCCC
Q 004724 338 DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG---RFGKLNKRVTFPETLDLSP 414 (733)
Q Consensus 338 ~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~---~~~Ki~~~V~FP~~LdL~~ 414 (733)
...+|+++|+.|+.+|.++++++|.|++|++ +.|+..|.++|++|+|||+||.++ ...|+++.|.||..|||.+
T Consensus 109 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~ 185 (279)
T cd02667 109 SECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP 185 (279)
T ss_pred CCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhh
Confidence 3579999999999999999999999999987 889999999999999999999876 3489999999999999999
Q ss_pred CcCCC-----CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC----------------------CCCEEEEeCCceee
Q 004724 415 YMSDG-----GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF----------------------RGHWYRVDDCKVTS 467 (733)
Q Consensus 415 ~~~~~-----~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~----------------------~g~W~~fnDs~V~~ 467 (733)
|+... ......|+|+|||+|.|...+ |||+||+|.. +++||+|||+.|++
T Consensus 186 ~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~---GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~ 262 (279)
T cd02667 186 FCDPKCNSSEDKSSVLYRLYGVVEHSGTMRS---GHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVRE 262 (279)
T ss_pred ccCccccccccCCCceEEEEEEEEEeCCCCC---CEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEE
Confidence 99762 345679999999999998633 9999999973 58999999999999
Q ss_pred echhhhcCCCcEEEEEE
Q 004724 468 VDLEEVLSQGAYMLLYN 484 (733)
Q Consensus 468 v~~e~vl~~~AYiLfY~ 484 (733)
++.++|++..||||||+
T Consensus 263 v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 263 VSLEEVLKSEAYLLFYE 279 (279)
T ss_pred CCHHHhccCCcEEEEeC
Confidence 99999999999999995
No 9
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-54 Score=463.54 Aligned_cols=283 Identities=25% Similarity=0.365 Sum_probs=246.5
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCcc-CCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCC-
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKE-CGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNL- 258 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~-~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f- 258 (733)
||.|+||||||||+||+|+++|+|++++++...... ......+++++|+.+|..|..+...++|..|+..|++..+.|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 899999999999999999999999999998765431 123456899999999999998888999999999998887777
Q ss_pred -----CCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCC-Cccccccccccch
Q 004724 259 -----GYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCN-NISNQYENMMDLT 332 (733)
Q Consensus 259 -----~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~-~~s~~~E~f~~L~ 332 (733)
..++||||+|||..||+.|++++.. .....++|.++|+|++.+.++|..|+ ..+.+.|+|+.|+
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~----------~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Ls 150 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPG----------AGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQ 150 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcc----------cCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEE
Confidence 4559999999999999999987632 12346789999999999999999999 7999999999999
Q ss_pred hhccCC--cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC----ccccccceEec
Q 004724 333 VEIHGD--AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG----RFGKLNKRVTF 406 (733)
Q Consensus 333 L~I~~~--~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~Ki~~~V~F 406 (733)
|+|++. ..+|+++|+.++.++.. ..|+.|++...+.|+..|.++|++|+|||+||.++ ...|+++.|.|
T Consensus 151 l~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~f 225 (305)
T cd02657 151 CHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKF 225 (305)
T ss_pred eecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEEC
Confidence 999864 46899999999876643 46899999999999999999999999999999864 34699999999
Q ss_pred CCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCC-CCEEEEeCCceeeechhhhcC-------CCc
Q 004724 407 PETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFR-GHWYRVDDCKVTSVDLEEVLS-------QGA 478 (733)
Q Consensus 407 P~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~-g~W~~fnDs~V~~v~~e~vl~-------~~A 478 (733)
|..|||.+|+. ++..|+|+|||+|.|... ++|||+||+|..+ ++||+|||+.|+++++++|+. ..|
T Consensus 226 P~~Ldl~~~~~----~~~~Y~L~~vI~H~G~~~--~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~a 299 (305)
T cd02657 226 PFELDLYELCT----PSGYYELVAVITHQGRSA--DSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIA 299 (305)
T ss_pred CceEecccccC----CCCcEEEEEEEEecCCCC--CCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceE
Confidence 99999999986 346899999999999632 2399999999855 899999999999999999974 589
Q ss_pred EEEEEE
Q 004724 479 YMLLYN 484 (733)
Q Consensus 479 YiLfY~ 484 (733)
|||||+
T Consensus 300 YiL~Y~ 305 (305)
T cd02657 300 YILLYK 305 (305)
T ss_pred EEEEEC
Confidence 999996
No 10
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-52 Score=455.76 Aligned_cols=292 Identities=32% Similarity=0.524 Sum_probs=246.1
Q ss_pred CCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCC-CCChHHHHhhcccc-CC
Q 004724 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSH-PFSPMSILSRLPNI-GG 256 (733)
Q Consensus 179 p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~-~isP~~ll~~L~~~-~~ 256 (733)
.+||.|+||||||||+||+|+++|+|++++++...... .....+++++|+.+|..|..+.. .+.|..+. .+..+ ..
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTED-DDDNKSVPLALQRLFLFLQLSESPVKTTELTD-KTRSFGWD 79 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCccc-CcccccHHHHHHHHHHHHHhCCccccCcchhh-eeccCCCC
Confidence 48999999999999999999999999999998632211 22345689999999999876543 33443332 22222 24
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhcc
Q 004724 257 NLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIH 336 (733)
Q Consensus 257 ~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~ 336 (733)
.+..++||||+|||.+||+.|++++.. ....++|.++|+|.+...++|..|++.+...++|+.|+|+++
T Consensus 80 ~~~~~~QqDa~Efl~~ll~~l~~~~~~-----------~~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~ 148 (334)
T cd02659 80 SLNTFEQHDVQEFFRVLFDKLEEKLKG-----------TGQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVK 148 (334)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcc-----------CcccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcC
Confidence 578899999999999999999987532 123457999999999999999999999999999999999998
Q ss_pred CCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC----ccccccceEecCCcCCC
Q 004724 337 GDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG----RFGKLNKRVTFPETLDL 412 (733)
Q Consensus 337 ~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~Ki~~~V~FP~~LdL 412 (733)
+ ..+|+++|+.|+.+|.+++.+.|.|++|+++..+.++..|.++|++|+|||+||.++ ...|+++.|.||..|||
T Consensus 149 ~-~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl 227 (334)
T cd02659 149 G-KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDM 227 (334)
T ss_pred C-CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecC
Confidence 4 689999999999999999999999999999999999999999999999999999853 34699999999999999
Q ss_pred CCCcCCC-----------CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEeCCceeeechhhhc------
Q 004724 413 SPYMSDG-----------GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF-RGHWYRVDDCKVTSVDLEEVL------ 474 (733)
Q Consensus 413 ~~~~~~~-----------~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~-~g~W~~fnDs~V~~v~~e~vl------ 474 (733)
.+|+... ......|+|+|||+|.|+..+ |||++|+|.. +++||+|||+.|+++++++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~---GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~ 304 (334)
T cd02659 228 EPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHG---GHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGG 304 (334)
T ss_pred ccccccccccccccccccCCCCeeEEEEEEEEecCCCCC---CCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCC
Confidence 9998653 234578999999999997544 9999999983 699999999999999999995
Q ss_pred ----------------CCCcEEEEEEEcC
Q 004724 475 ----------------SQGAYMLLYNRVS 487 (733)
Q Consensus 475 ----------------~~~AYiLfY~R~~ 487 (733)
+..||||||+|++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 305 EETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ccccccccccccccccccceEEEEEEEeC
Confidence 2369999999975
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-53 Score=453.33 Aligned_cols=275 Identities=24% Similarity=0.344 Sum_probs=236.8
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCc--cCCCCchHHHHHHHHHHHHhccC---------------CCCCC
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRK--ECGRDDWCFLCEFQTHVEKASQS---------------SHPFS 243 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~--~~~~~~~~~l~~L~~lf~~l~~s---------------~~~is 243 (733)
||.|+||||||||+||+|+++|+||++|+...+.. .......+++++|+.++..+... ..++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 89999999999999999999999999998743222 22234457999999999888542 34689
Q ss_pred hHHHHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccc
Q 004724 244 PMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISN 323 (733)
Q Consensus 244 P~~ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~ 323 (733)
|..|+..++...+.|..++||||+|||++||+.|++++... ....+.++|+|.+.+.++|..|++++.
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------~~~~~~~~f~~~~~~~i~C~~C~~~s~ 148 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------LGLNPNDLFKFMIEDRLECLSCKKVKY 148 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------ccCCchhheEEEeeEEEEcCCCCCEEE
Confidence 99999999999999999999999999999999999876421 123478999999999999999999999
Q ss_pred cccccccchhhccCC-------------cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEe
Q 004724 324 QYENMMDLTVEIHGD-------------AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALK 390 (733)
Q Consensus 324 ~~E~f~~L~L~I~~~-------------~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~Lk 390 (733)
+.++|.+|+|+++.. ..+|+++|+.|+.+|.++ +.|+.|++++.+.|+.+|.+||+||+|||+
T Consensus 149 ~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~Lk 224 (311)
T cd02658 149 TSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMK 224 (311)
T ss_pred eecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeE
Confidence 999999999988743 249999999999999987 679999999999999999999999999999
Q ss_pred eeecC---ccccccceEecCCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC---CCCEEEEeCCc
Q 004724 391 RFQSG---RFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF---RGHWYRVDDCK 464 (733)
Q Consensus 391 RF~~~---~~~Ki~~~V~FP~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~---~g~W~~fnDs~ 464 (733)
||.++ ...|+...|.||..| ....|+|+|||+|.|.... +|||++|+|.. +++||+|||+.
T Consensus 225 RF~~~~~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~~~~--~GHY~~~vk~~~~~~~~W~~fnD~~ 291 (311)
T cd02658 225 RFQLLENWVPKKLDVPIDVPEEL-----------GPGKYELIAFISHKGTSVH--SGHYVAHIKKEIDGEGKWVLFNDEK 291 (311)
T ss_pred EEEecCCCceEeeccccccCCcC-----------CCCcEEEEEEEEccCCCCC--CcceEEEEeCCCCCCCCEEEecCce
Confidence 99873 236999999999777 3357999999999997322 39999999984 28999999999
Q ss_pred eeeechhhhcCCCcEEEEEE
Q 004724 465 VTSVDLEEVLSQGAYMLLYN 484 (733)
Q Consensus 465 V~~v~~e~vl~~~AYiLfY~ 484 (733)
|++++..+++...||||||+
T Consensus 292 V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 292 VVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred eEECCcccccCCcceEEEEC
Confidence 99999999999999999995
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.3e-52 Score=468.31 Aligned_cols=292 Identities=21% Similarity=0.328 Sum_probs=238.5
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccC---CCCCChHHHHhhcccc
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQS---SHPFSPMSILSRLPNI 254 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s---~~~isP~~ll~~L~~~ 254 (733)
+.+||.|+|||||||||||+|+++|+||++++...+.........+++++|..++.+++.. ..+++|..|+.++...
T Consensus 118 G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~ 197 (440)
T cd02669 118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKV 197 (440)
T ss_pred CccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhh
Confidence 3499999999999999999999999999999986654322223447899999999999764 4689999999999876
Q ss_pred C-CCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCC--------------
Q 004724 255 G-GNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCN-------------- 319 (733)
Q Consensus 255 ~-~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~-------------- 319 (733)
. +.|..++||||+|||.+||+.||+++... .....++|+++|+|++++.++|..|.
T Consensus 198 ~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~---------~~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~ 268 (440)
T cd02669 198 SKKKFSITEQSDPVEFLSWLLNTLHKDLGGS---------KKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDS 268 (440)
T ss_pred cccccCCcccCCHHHHHHHHHHHHHHHhccC---------CCCCCCcceeccCceEEEEEEeeccccccccccccccccc
Confidence 5 56889999999999999999999876421 12356899999999999999987654
Q ss_pred -CccccccccccchhhccCCc----ccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeec
Q 004724 320 -NISNQYENMMDLTVEIHGDA----ASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQS 394 (733)
Q Consensus 320 -~~s~~~E~f~~L~L~I~~~~----~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~ 394 (733)
.++.+.++|++|+|+|+... .....+|.++...|.|+ +|.|+.|.....++|+++|++||+||+||||||.+
T Consensus 269 ~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~ 345 (440)
T cd02669 269 RVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSK 345 (440)
T ss_pred ccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEEEEecccC
Confidence 24667899999999997531 01112222233333333 37788888888999999999999999999999987
Q ss_pred Cc--cccccceEecCCc-CCCCCCcCCC---CCCcceeEEEEEEEEecCC-CCCCCCeEEEEEEc-CCCCEEEEeCCcee
Q 004724 395 GR--FGKLNKRVTFPET-LDLSPYMSDG---GDRTDVYKLYAVVVHVDML-NASFFGHYICYVKD-FRGHWYRVDDCKVT 466 (733)
Q Consensus 395 ~~--~~Ki~~~V~FP~~-LdL~~~~~~~---~~~~~~Y~L~aVV~H~G~~-~ss~~GHY~a~vr~-~~g~W~~fnDs~V~ 466 (733)
+. ..|+++.|.||.. |||.+|+... ......|+|+|||+|.|+. .+ |||+||+|+ .+|+||+|||+.|+
T Consensus 346 ~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~s---GHY~a~v~~~~~~~W~~fdD~~V~ 422 (440)
T cd02669 346 NNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQED---GTWRVQLRHKSTNKWFEIQDLNVK 422 (440)
T ss_pred CCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCC---eeEEEEEEcCCCCeEEEEECCeee
Confidence 54 4699999999986 8999998642 2456899999999999986 44 999999997 47899999999999
Q ss_pred eechhhhcCCCcEEEEEE
Q 004724 467 SVDLEEVLSQGAYMLLYN 484 (733)
Q Consensus 467 ~v~~e~vl~~~AYiLfY~ 484 (733)
++++++|+..+||||||+
T Consensus 423 ~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 423 EVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EcCHHHhccCCceEEEeC
Confidence 999999999999999995
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-52 Score=452.96 Aligned_cols=307 Identities=30% Similarity=0.559 Sum_probs=266.3
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCc-----hHHHHHHHHHHHHhc-cCCCCCChHHHHhhc
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDD-----WCFLCEFQTHVEKAS-QSSHPFSPMSILSRL 251 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~-----~~~l~~L~~lf~~l~-~s~~~isP~~ll~~L 251 (733)
+.+||.|+||||||||.||||.|++.||+|++........+..+ -.+..++..|+.++. ....++.|..|...+
T Consensus 264 GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tI 343 (823)
T COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343 (823)
T ss_pred cccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHH
Confidence 56999999999999999999999999999999877665544321 135566777777765 446789999999999
Q ss_pred cccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCC---------------------CCcccccccceeceeEE
Q 004724 252 PNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPP---------------------RSQETTLIQHIFGGHLQ 310 (733)
Q Consensus 252 ~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~---------------------~~~~~siI~~lF~G~l~ 310 (733)
+.++..|.++.|||.+||+.+|||.||+.+.+....+....+ ...+.++|.++|+|.++
T Consensus 344 G~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyK 423 (823)
T COG5560 344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYK 423 (823)
T ss_pred hhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Confidence 999999999999999999999999999998644333222211 23467999999999999
Q ss_pred eEEEeCCCCCccccccccccchhhccCC----------------------------------------------------
Q 004724 311 SQVICSKCNNISNQYENMMDLTVEIHGD---------------------------------------------------- 338 (733)
Q Consensus 311 s~i~C~~C~~~s~~~E~f~~L~L~I~~~---------------------------------------------------- 338 (733)
+++.|..|+.++.+++||++|+|+++-.
T Consensus 424 STL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~ 503 (823)
T COG5560 424 STLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMC 503 (823)
T ss_pred ceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCCccceeEEE
Confidence 9999999999999999999999998510
Q ss_pred --------------------------------------------------------------------------------
Q 004724 339 -------------------------------------------------------------------------------- 338 (733)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (733)
T Consensus 504 iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~~ 583 (823)
T COG5560 504 IYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEFE 583 (823)
T ss_pred EEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 004724 339 -------------------------------------------------------------------------------- 338 (733)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (733)
T Consensus 584 ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~lw 663 (823)
T COG5560 584 ELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLW 663 (823)
T ss_pred HHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCCccc
Confidence
Q ss_pred ----------cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc--cccccceEec
Q 004724 339 ----------AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR--FGKLNKRVTF 406 (733)
Q Consensus 339 ----------~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~--~~Ki~~~V~F 406 (733)
..||++||+.|.++|.|.-.+.|+|++|+..+.|.|++.||++|.||+||||||+..+ ..|+.+-|+|
T Consensus 664 ~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVey 743 (823)
T COG5560 664 TIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEY 743 (823)
T ss_pred hhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhcc
Confidence 3589999999999999998899999999999999999999999999999999998543 3699999999
Q ss_pred C-CcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechhhhcCCCcEEEEEE
Q 004724 407 P-ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYN 484 (733)
Q Consensus 407 P-~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~ 484 (733)
| ..|||+.+...-.++...|+|+||=.|+|...+ |||+||+|+ .+++||+|||++|+++.+++.+...||+|||+
T Consensus 744 PiddldLs~~~~~~~~p~liydlyavDNHygglsg---GHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyr 820 (823)
T COG5560 744 PIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSG---GHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYR 820 (823)
T ss_pred ccccccccceEEeecCcceEEEeeeccccccccCC---cceeeeeecccCCceEEecCccccccCccccccceeEEEEEE
Confidence 9 789999887665566689999999999998877 999999999 46799999999999999999999999999999
Q ss_pred EcC
Q 004724 485 RVS 487 (733)
Q Consensus 485 R~~ 487 (733)
|..
T Consensus 821 rk~ 823 (823)
T COG5560 821 RKS 823 (823)
T ss_pred ecC
Confidence 963
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-49 Score=398.34 Aligned_cols=299 Identities=26% Similarity=0.404 Sum_probs=235.2
Q ss_pred CCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCC-----CccC-CCCchHHHHHHHHHHHHhc-cCCCCCChHHHH
Q 004724 176 GFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGH-----RKEC-GRDDWCFLCEFQTHVEKAS-QSSHPFSPMSIL 248 (733)
Q Consensus 176 ~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~-----~~~~-~~~~~~~l~~L~~lf~~l~-~s~~~isP~~ll 248 (733)
...|.||.|+|||||||++||||+.+..+..+|+.... .... ..........+..++..+. .....++|.+|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 45789999999999999999999999999885543221 1111 2222234445555554443 345668999999
Q ss_pred hhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCC------------------------CCCcccccccce
Q 004724 249 SRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVP------------------------PRSQETTLIQHI 304 (733)
Q Consensus 249 ~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~------------------------~~~~~~siI~~l 304 (733)
..+..+++.|....|||+|||+.++||.||+++........... ....+.++|.+.
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~ 227 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKT 227 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHH
Confidence 99999999999999999999999999999998743221111000 013456899999
Q ss_pred eceeEEeEEEeCCCCCccccccccccchhhccC-CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCc
Q 004724 305 FGGHLQSQVICSKCNNISNQYENMMDLTVEIHG-DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPN 383 (733)
Q Consensus 305 F~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~-~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~ 383 (733)
|.|+..++++|..|+++++++.+|..|.+++.. ....|+|||++|.++|.|+++++|+|++|++++.++|++.|.+||+
T Consensus 228 f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~ 307 (415)
T COG5533 228 FFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPD 307 (415)
T ss_pred HhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCc
Confidence 999999999999999999999999999999863 2356999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeecCccccccceEecCCcCCCCCCc---------------CCCCCCcceeEEEEEEEEecCCCCCCCCeEEE
Q 004724 384 ILTIALKRFQSGRFGKLNKRVTFPETLDLSPYM---------------SDGGDRTDVYKLYAVVVHVDMLNASFFGHYIC 448 (733)
Q Consensus 384 vLiI~LkRF~~~~~~Ki~~~V~FP~~LdL~~~~---------------~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a 448 (733)
+|||||+||.- .|..|..||+.++. ...+-.+.+|+|+|||||.|+.++ |||++
T Consensus 308 ~LII~i~RF~i--------~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~g---GHY~s 376 (415)
T COG5533 308 VLIIHISRFHI--------SVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNG---GHYFS 376 (415)
T ss_pred eEEEEeeeeeE--------EeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceecC---ceeEE
Confidence 99999999972 22223333333322 222345679999999999999887 99999
Q ss_pred EEEcCCCCEEEEeCCceeeechhhh-cCCCcEEEEEEEc
Q 004724 449 YVKDFRGHWYRVDDCKVTSVDLEEV-LSQGAYMLLYNRV 486 (733)
Q Consensus 449 ~vr~~~g~W~~fnDs~V~~v~~e~v-l~~~AYiLfY~R~ 486 (733)
+|+. ++.|+.|||+.|+.++...- ....+|||||+|.
T Consensus 377 ~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 377 EVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred eeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 9996 68999999999999976443 3458999999995
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-48 Score=404.11 Aligned_cols=210 Identities=40% Similarity=0.726 Sum_probs=190.2
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCCCC
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGY 260 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f~~ 260 (733)
||.|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999987521
Q ss_pred CCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccc-cccccccchhhccCC-
Q 004724 261 GRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISN-QYENMMDLTVEIHGD- 338 (733)
Q Consensus 261 g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~-~~E~f~~L~L~I~~~- 338 (733)
+||||||||..||+.|+. .+.++|.|++.+.++|..|++.+. +.|+|++|+|+|+..
T Consensus 33 -~QqDa~EFl~~ll~~l~~--------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~ 91 (240)
T cd02662 33 -EQQDAHELFQVLLETLEQ--------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQS 91 (240)
T ss_pred -hhcCHHHHHHHHHHHHHH--------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccC
Confidence 899999999999999972 377899999999999999999866 499999999999865
Q ss_pred ---cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc---cccccceEecCCcCCC
Q 004724 339 ---AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR---FGKLNKRVTFPETLDL 412 (733)
Q Consensus 339 ---~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~---~~Ki~~~V~FP~~LdL 412 (733)
..+|+++|+.|+.+|.+++ |.|++| +..|.++|+||+|||+||.++. ..|+++.|.||..|
T Consensus 92 ~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l-- 158 (240)
T cd02662 92 SGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL-- 158 (240)
T ss_pred CCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc--
Confidence 4699999999999999987 899999 6789999999999999998643 47999999999888
Q ss_pred CCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC---------------------CCCEEEEeCCceeeechh
Q 004724 413 SPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF---------------------RGHWYRVDDCKVTSVDLE 471 (733)
Q Consensus 413 ~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~---------------------~g~W~~fnDs~V~~v~~e 471 (733)
....|+|+|||+|.|+..+ |||++|+|.. .++||+|||+.|++++++
T Consensus 159 ---------~~~~Y~L~avi~H~G~~~~---GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~ 226 (240)
T cd02662 159 ---------PKVLYRLRAVVVHYGSHSS---GHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSES 226 (240)
T ss_pred ---------CCceEEEEEEEEEeccCCC---ceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHH
Confidence 4468999999999998744 9999999984 389999999999999999
Q ss_pred hh-cCCCcEEEEEE
Q 004724 472 EV-LSQGAYMLLYN 484 (733)
Q Consensus 472 ~v-l~~~AYiLfY~ 484 (733)
+| .+.+||||||+
T Consensus 227 ~v~~~~~aY~LfYe 240 (240)
T cd02662 227 EVLEQKSAYMLFYE 240 (240)
T ss_pred HHhhCCCEEEEEeC
Confidence 99 88999999995
No 16
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-48 Score=429.27 Aligned_cols=329 Identities=28% Similarity=0.460 Sum_probs=277.6
Q ss_pred CccccCCCccccCchhhhhcccCCCCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHH
Q 004724 150 SKVIKKPREILFPYDEFLKLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQ 229 (733)
Q Consensus 150 s~~~~~p~~~l~~~~~~~~~~~~~~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~ 229 (733)
.+..+.|+.+||. .|..+-+...+|+ +||+|.|.||||||+||+|+.+..||+.+...+........ .+..+||
T Consensus 168 VRvlkdPTGVLWH--sF~nYnSKkeTGY--VGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grd--SValaLQ 241 (1089)
T COG5077 168 VRVLKDPTGVLWH--SFLNYNSKKETGY--VGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRD--SVALALQ 241 (1089)
T ss_pred EEEEeCCccceee--cccccccccceee--eeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccc--hHHHHHH
Confidence 4788999999996 2322222234555 99999999999999999999999999999887655443332 3667899
Q ss_pred HHHHHhccCCCCCChHHHHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeE
Q 004724 230 THVEKASQSSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHL 309 (733)
Q Consensus 230 ~lf~~l~~s~~~isP~~ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l 309 (733)
++|..|+....++++.+|.+.+..- .+....|+|.|||-+.|.|.|+..+... .-...++.+|-|++
T Consensus 242 r~Fynlq~~~~PvdTteltrsfgWd--s~dsf~QHDiqEfnrVl~DnLEksmrgt-----------~VEnaln~ifVgkm 308 (1089)
T COG5077 242 RLFYNLQTGEEPVDTTELTRSFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMRGT-----------VVENALNGIFVGKM 308 (1089)
T ss_pred HHHHHHhccCCCcchHHhhhhcCcc--cchHHHHHhHHHHHHHHHHHHHHhhcCC-----------hhhhHHhHHHHHHh
Confidence 9999999999999999998876543 3556689999999999999998765321 12235789999999
Q ss_pred EeEEEeCCCCCccccccccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEE
Q 004724 310 QSQVICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIAL 389 (733)
Q Consensus 310 ~s~i~C~~C~~~s~~~E~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~L 389 (733)
.+.+.|.+-.+++.+.|.||++.+++++ ..+|++.++.|++.|+++|+|+|.|++= ..++|.|...|.+||+||.+||
T Consensus 309 ksyikCvnvnyEsarvedfwdiqlNvK~-~knLqeSfr~yIqvE~l~GdN~Y~ae~~-GlqdAkKGViFeSlPpVlhlqL 386 (1089)
T COG5077 309 KSYIKCVNVNYESARVEDFWDIQLNVKG-MKNLQESFRRYIQVETLDGDNRYNAEKH-GLQDAKKGVIFESLPPVLHLQL 386 (1089)
T ss_pred hceeeEEEechhhhhHHHHHHHHhcccc-hhhHHHHHHHhhhheeccCCcccccccc-cchhhccceeeccCchHHHHHH
Confidence 9999999999999999999999999986 7999999999999999999999999984 4689999999999999999999
Q ss_pred eeeec----CccccccceEecCCcCCCCCCcCCCC----CCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEE
Q 004724 390 KRFQS----GRFGKLNKRVTFPETLDLSPYMSDGG----DRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRV 460 (733)
Q Consensus 390 kRF~~----~~~~Ki~~~V~FP~~LdL~~~~~~~~----~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~f 460 (733)
|||.+ +...|++++.+||+++||.+|++... +....|.|+||++|.|...+ |||||++|. .+|+||+|
T Consensus 387 KRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~---GHyYallKpe~dg~Wykf 463 (1089)
T COG5077 387 KRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHE---GHYYALLKPEKDGRWYKF 463 (1089)
T ss_pred HHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccccCC---ceEEEEeccccCCCceee
Confidence 99975 56689999999999999999997643 34589999999999999877 999999996 58999999
Q ss_pred eCCceeeechhhhcCC----------------------CcEEEEEEEcCCCCCCcccCCCCCcC
Q 004724 461 DDCKVTSVDLEEVLSQ----------------------GAYMLLYNRVSARPSYLVDTESSSSR 502 (733)
Q Consensus 461 nDs~V~~v~~e~vl~~----------------------~AYiLfY~R~~~~~~~~~~~~~~~~~ 502 (733)
||++|+++++.+|+.. +||||+|-|++.....+.++.....+
T Consensus 464 dDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ddLlnPV~a~diP 527 (1089)
T COG5077 464 DDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLDDLLNPVAAVDIP 527 (1089)
T ss_pred cceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHHhhhCchhhhhCC
Confidence 9999999999999732 48999999998876666554444333
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-45 Score=377.58 Aligned_cols=220 Identities=43% Similarity=0.781 Sum_probs=200.9
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCCCC
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGY 260 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f~~ 260 (733)
||.|.||||||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccCC--
Q 004724 261 GRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGD-- 338 (733)
Q Consensus 261 g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~~-- 338 (733)
+||||+||+.+||+.|+ +++.++|+|++..+++|..|++.+.+.++|+.|.|+++..
T Consensus 21 -~QqDa~Ef~~~ll~~l~--------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~ 79 (230)
T cd02674 21 -DQQDAQEFLLFLLDGLH--------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSG 79 (230)
T ss_pred -hhhhHHHHHHHHHHHHh--------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccC
Confidence 79999999999999997 3588999999999999999999999999999999999753
Q ss_pred ---cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC--ccccccceEecC-CcCCC
Q 004724 339 ---AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG--RFGKLNKRVTFP-ETLDL 412 (733)
Q Consensus 339 ---~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~--~~~Ki~~~V~FP-~~LdL 412 (733)
..+|+++|+.|+.+|.+++.+++.|++|+++..+.++..|.++|++|+|||+||.++ ...|+++.|.|| +.||+
T Consensus 80 ~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l 159 (230)
T cd02674 80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDL 159 (230)
T ss_pred CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccc
Confidence 359999999999999999999999999999999999999999999999999999865 357999999999 57999
Q ss_pred CCCcCC-CCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCC-CCEEEEeCCceeeechhhhcCCCcEEEEEE
Q 004724 413 SPYMSD-GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFR-GHWYRVDDCKVTSVDLEEVLSQGAYMLLYN 484 (733)
Q Consensus 413 ~~~~~~-~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~-g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~ 484 (733)
.+|+.. ......+|+|+|||+|.|...+ |||++|+|..+ ++||+|||+.|++++++++....||||||+
T Consensus 160 ~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~---GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 160 TPYVDTRSFTGPFKYDLYAVVNHYGSLNG---GHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ccccCcccCCCCceEEEEEEEEeeCCCCC---cEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 988532 2345678999999999998743 99999999854 899999999999999999988999999995
No 18
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-45 Score=421.22 Aligned_cols=316 Identities=33% Similarity=0.515 Sum_probs=261.6
Q ss_pred CCCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccC----CCCchHHHHHHHHHHHHhccC--CCCCChHH
Q 004724 173 DKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKEC----GRDDWCFLCEFQTHVEKASQS--SHPFSPMS 246 (733)
Q Consensus 173 ~~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~----~~~~~~~l~~L~~lf~~l~~s--~~~isP~~ 246 (733)
....++++||.|+|||||||++||||+.++.|+..++...+.... ......+..++..++..++.. ...+.|..
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHH
Confidence 345667899999999999999999999999999777665332221 122234666666666666544 45678999
Q ss_pred HHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCC-------------CCCCC-----------CCCccccccc
Q 004724 247 ILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGG-------------EKAVP-----------PRSQETTLIQ 302 (733)
Q Consensus 247 ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~-------------~~~~~-----------~~~~~~siI~ 302 (733)
|+..+..+.+.|.++.|||+|||+.++++.||+++...... ..... ......+.|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 99999999999999899999999999999999998653210 00000 0122345589
Q ss_pred ceeceeEEeEEEeCCCCCccccccccccchhhccCC-----cccHHHHHHhcccceecCCCCCcccCCCCccceeE--EE
Q 004724 303 HIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGD-----AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAW--KR 375 (733)
Q Consensus 303 ~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~~-----~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~--K~ 375 (733)
++|.|++.+.++|..|++++.++++|.+++|+|+.. ..+|++|+..|+..|.++++++|.|++|+++.... |+
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~ 534 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKK 534 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccce
Confidence 999999999999999999999999999999999743 24599999999999999999999999999999985 99
Q ss_pred EEeecCCceEEEEEeeeecC--ccccccceEecCC-cCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc
Q 004724 376 LTVRRAPNILTIALKRFQSG--RFGKLNKRVTFPE-TLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD 452 (733)
Q Consensus 376 ~~I~~lP~vLiI~LkRF~~~--~~~Ki~~~V~FP~-~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~ 452 (733)
+.|++||++|+|||+||..+ .+.|...-|+||. .+++.++.....+....|+|+|||+|.|+..+ |||+||++.
T Consensus 535 ~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gtl~s---GHYta~~~~ 611 (653)
T KOG1868|consen 535 LTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGTLNS---GHYTAYVYK 611 (653)
T ss_pred eeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCcccC---CceEEEEee
Confidence 99999999999999999865 5689999999994 67777777777777778999999999998776 999999987
Q ss_pred -CCCCEEEEeCCceeeechhhhcCCCcEEEEEEEcCCCCC
Q 004724 453 -FRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPS 491 (733)
Q Consensus 453 -~~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R~~~~~~ 491 (733)
..+.|+.|||+.|+.+...++....||||||.|......
T Consensus 612 ~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~~ 651 (653)
T KOG1868|consen 612 NEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFEE 651 (653)
T ss_pred cCCCceEEecCeeeeccccccccCCCceEEEeecCCcccc
Confidence 468899999999999999999889999999999876543
No 19
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=407.70 Aligned_cols=303 Identities=31% Similarity=0.505 Sum_probs=260.5
Q ss_pred CCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCC--CCchHHHHHHHHHHHHhccC-CCCCChHHHHhhccc
Q 004724 177 FAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECG--RDDWCFLCEFQTHVEKASQS-SHPFSPMSILSRLPN 253 (733)
Q Consensus 177 ~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~--~~~~~~l~~L~~lf~~l~~s-~~~isP~~ll~~L~~ 253 (733)
.+-|||+|-|+|||||+++|-|+++|.++..++...+..... ..+..+++++|.+|..+..+ -+.+-|..|.+.++-
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~ 172 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRL 172 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhc
Confidence 345999999999999999999999999999887765542211 11223899999999998755 578899999999988
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchh
Q 004724 254 IGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTV 333 (733)
Q Consensus 254 ~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L 333 (733)
.+..+...+||||-|||..|||.|++.+++- + ..-++.+.|+|....+..|..|-+.-...|.|..|+|
T Consensus 173 ~~~pln~reqhDA~eFf~sLld~~De~LKkl-g----------~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l 241 (944)
T KOG1866|consen 173 WGEPLNLREQHDALEFFNSLLDSLDEALKKL-G----------HPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNL 241 (944)
T ss_pred cCCccchHhhhhHHHHHHHHHHHHHHHHHHh-C----------CcHHHHHHhcCccchhhhhccCCcccCccccceeeee
Confidence 8888899999999999999999999886542 2 2346889999999999999999999999999999999
Q ss_pred hccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC----ccccccceEecCCc
Q 004724 334 EIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG----RFGKLNKRVTFPET 409 (733)
Q Consensus 334 ~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~Ki~~~V~FP~~ 409 (733)
+|. ..+|+++|++|.+.|.++|.|+|+|++|++++...|+..|.+||.+|+||||||.++ ...|.+..+.||..
T Consensus 242 ~i~--~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ 319 (944)
T KOG1866|consen 242 DIR--HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRE 319 (944)
T ss_pred ecc--cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchh
Confidence 998 589999999999999999999999999999999999999999999999999999864 34799999999999
Q ss_pred CCCCCCcCCC-----------------CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc----CCCCEEEEeCCceeee
Q 004724 410 LDLSPYMSDG-----------------GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD----FRGHWYRVDDCKVTSV 468 (733)
Q Consensus 410 LdL~~~~~~~-----------------~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~----~~g~W~~fnDs~V~~v 468 (733)
|||.+|+..+ ..++.+|+|+||++|.|.+.+ ||||+|+++ .+++||+|||..|++.
T Consensus 320 ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsa---GHYySfIk~rr~~~~~kWykfnD~~Vte~ 396 (944)
T KOG1866|consen 320 LDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASA---GHYYSFIKQRRGEDGNKWYKFNDGDVTEC 396 (944)
T ss_pred hcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccC---cchhhhhhhhccCCCCceEeccCcccccc
Confidence 9999998543 124568999999999998765 999999986 4579999999999999
Q ss_pred chhhhcC--------------------CCcEEEEEEEcCCCCCCccc
Q 004724 469 DLEEVLS--------------------QGAYMLLYNRVSARPSYLVD 495 (733)
Q Consensus 469 ~~e~vl~--------------------~~AYiLfY~R~~~~~~~~~~ 495 (733)
+..++-. =+||||||+|++..|....+
T Consensus 397 ~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~~p 443 (944)
T KOG1866|consen 397 KMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDDEP 443 (944)
T ss_pred chhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCccccc
Confidence 7665521 16999999999887765544
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-43 Score=383.08 Aligned_cols=271 Identities=23% Similarity=0.368 Sum_probs=215.2
Q ss_pred CCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCcc-----------C--C-------CCchHHHHHHHHHHHHhccC
Q 004724 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKE-----------C--G-------RDDWCFLCEFQTHVEKASQS 238 (733)
Q Consensus 179 p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~-----------~--~-------~~~~~~l~~L~~lf~~l~~s 238 (733)
|+||.|+||||||||+||+|+++|+||++++....... . . ....+++.+|+.+|..|..+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999998652211 0 0 11236999999999999876
Q ss_pred C-CCCChHHHHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCC--CCCCCCCcccccccceeceeEEeEEEe
Q 004724 239 S-HPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGE--KAVPPRSQETTLIQHIFGGHLQSQVIC 315 (733)
Q Consensus 239 ~-~~isP~~ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~--~~~~~~~~~~siI~~lF~G~l~s~i~C 315 (733)
. ..+.|..++..+.. .||||+||+..||+.|++.+....... ..........++|.++|.|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 5 78899999987652 899999999999999999875322110 001112345789999999999999999
Q ss_pred CCCC---CccccccccccchhhccC---------CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCc
Q 004724 316 SKCN---NISNQYENMMDLTVEIHG---------DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPN 383 (733)
Q Consensus 316 ~~C~---~~s~~~E~f~~L~L~I~~---------~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~ 383 (733)
..|+ ..+.+.|+|++|+|+|.. ...+|+++|+.|+..|. |.++|+
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~ 209 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQ 209 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCH
Confidence 9997 789999999999999986 57899999999997765 889999
Q ss_pred eEEEEEeeeecC--ccccccceEecCCcCCCCCCcCCC----------------------------CCCcceeEEEEEEE
Q 004724 384 ILTIALKRFQSG--RFGKLNKRVTFPETLDLSPYMSDG----------------------------GDRTDVYKLYAVVV 433 (733)
Q Consensus 384 vLiI~LkRF~~~--~~~Ki~~~V~FP~~LdL~~~~~~~----------------------------~~~~~~Y~L~aVV~ 433 (733)
+|.|||| +.+. ...+..++.+||...++.+++... ......|+|+|||+
T Consensus 210 vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~ 288 (343)
T cd02666 210 RSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFI 288 (343)
T ss_pred HHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEE
Confidence 9999999 3221 224566666777655555443210 12466899999999
Q ss_pred EecCCCCCCCCeEEEEEEcC-CCCEEEEeCCceeeechhhhcC------CCcEEEEEE
Q 004724 434 HVDMLNASFFGHYICYVKDF-RGHWYRVDDCKVTSVDLEEVLS------QGAYMLLYN 484 (733)
Q Consensus 434 H~G~~~ss~~GHY~a~vr~~-~g~W~~fnDs~V~~v~~e~vl~------~~AYiLfY~ 484 (733)
|.|...+ |||++|+|+. ++.||+|||..|++++.++++. .+||||+|+
T Consensus 289 H~G~~~~---GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 289 HRGEASS---GHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred eecCCCC---CeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 9998744 9999999984 5899999999999999999974 489999994
No 21
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=2.6e-43 Score=365.13 Aligned_cols=249 Identities=38% Similarity=0.678 Sum_probs=198.9
Q ss_pred CCCcccCCCccchHHHHHHHhcCHHHHHHHHhcC-----CCccCCCCchHHHHHHHHHHHHhccC---CCCCChHHHHhh
Q 004724 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKG-----HRKECGRDDWCFLCEFQTHVEKASQS---SHPFSPMSILSR 250 (733)
Q Consensus 179 p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~-----~~~~~~~~~~~~l~~L~~lf~~l~~s---~~~isP~~ll~~ 250 (733)
|+||.|.||||||||+||+|+++|+|+++|++.. ..........+++++|+.+|..++.. ...+.|..++..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 6899999999999999999999999999998751 11122233446999999999999865 577899999999
Q ss_pred ccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCcccccccccc
Q 004724 251 LPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMD 330 (733)
Q Consensus 251 L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~ 330 (733)
+....+.|..+.||||+|||..||+.|++++.................+++.++|++++...+.|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 99988889999999999999999999998764422100000112345678899999999999999999876
Q ss_pred chhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC----ccccccceEec
Q 004724 331 LTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG----RFGKLNKRVTF 406 (733)
Q Consensus 331 L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~Ki~~~V~F 406 (733)
+..|.++|++|+|+|+||.++ ...|+.+.|.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 567899999999999999532 35799999999
Q ss_pred C-CcCCCCCCcCCCCC---CcceeEEEEEEEEecCCCCCCCCeEEEEEEcCC-CCEEEEeCCceeeechhhhcC---CCc
Q 004724 407 P-ETLDLSPYMSDGGD---RTDVYKLYAVVVHVDMLNASFFGHYICYVKDFR-GHWYRVDDCKVTSVDLEEVLS---QGA 478 (733)
Q Consensus 407 P-~~LdL~~~~~~~~~---~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~-g~W~~fnDs~V~~v~~e~vl~---~~A 478 (733)
| +.|||.+++..+.. ....|+|+|||+|.|...+ |||+||+|+.+ ++|++|||+.|+++++++|.. .+|
T Consensus 188 ~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~---GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~ 264 (269)
T PF00443_consen 188 PLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADS---GHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTA 264 (269)
T ss_dssp -SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTS---EEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCE
T ss_pred Cchhhhhhhhhccccccccccceeeehhhhcccccccc---ceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCce
Confidence 9 79999999877643 3689999999999995444 99999999844 469999999999999999988 899
Q ss_pred EEEEE
Q 004724 479 YMLLY 483 (733)
Q Consensus 479 YiLfY 483 (733)
|||||
T Consensus 265 yll~Y 269 (269)
T PF00443_consen 265 YLLFY 269 (269)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99999
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-42 Score=354.26 Aligned_cols=217 Identities=28% Similarity=0.440 Sum_probs=183.1
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCCCC
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGY 260 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f~~ 260 (733)
||.|.|||||+|++.|+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999986
Q ss_pred CCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccCCcc
Q 004724 261 GRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGDAA 340 (733)
Q Consensus 261 g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~~~~ 340 (733)
.||||+||++.||+.|++.+..... ...+.....++|.++|+|++.+++.| |+..+.+.|+|++|+|+|.+ ..
T Consensus 21 -~QQDa~Ef~~~Lld~Le~~l~~~~~---~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~-~~ 93 (228)
T cd02665 21 -QQQDVSEFTHLLLDWLEDAFQAAAE---AISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNG-YG 93 (228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccccc---cccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECC-CC
Confidence 6999999999999999988753211 11122345678999999999987776 78889999999999999986 58
Q ss_pred cHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC--ccccccceEecCCcCCCCCCcCC
Q 004724 341 SLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG--RFGKLNKRVTFPETLDLSPYMSD 418 (733)
Q Consensus 341 sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~--~~~Ki~~~V~FP~~LdL~~~~~~ 418 (733)
+|++||+.++.+|.+++++.+ +...+.++..|.+||+||+|||+||.++ ...|++++|+||..|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~------~~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l-------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSD------HSVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII-------- 159 (228)
T ss_pred CHHHHHHHhhhhccccccccc------chhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc--------
Confidence 999999999999888875432 2345667788999999999999999874 467999999999887
Q ss_pred CCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechhhhcC--------CCcEEEEEE
Q 004724 419 GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLEEVLS--------QGAYMLLYN 484 (733)
Q Consensus 419 ~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e~vl~--------~~AYiLfY~ 484 (733)
....|+|+|||+|.|...+ |||++|+|+ .+++||+|||+.|+++++++|+. ..||||||.
T Consensus 160 ---~~~~Y~L~aVi~H~G~~~~---GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 ---QQVPYELHAVLVHEGQANA---GHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ---CCceeEEEEEEEecCCCCC---CEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 2357999999999998544 999999986 47899999999999999999973 479999994
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-42 Score=357.12 Aligned_cols=238 Identities=22% Similarity=0.352 Sum_probs=187.0
Q ss_pred cccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCCCCC
Q 004724 182 LLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGYG 261 (733)
Q Consensus 182 L~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f~~g 261 (733)
|+|.||+||+||.+|+|..+ ++..+.|..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i--------------------------------------------------~~~~~~F~~~ 31 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI--------------------------------------------------GKINTEFDND 31 (245)
T ss_pred ceecCCeeeehhHHHHHHHH--------------------------------------------------hhhhhhcCCC
Confidence 78999999999999999532 2233468899
Q ss_pred CcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccCC-cc
Q 004724 262 RQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGD-AA 340 (733)
Q Consensus 262 ~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~~-~~ 340 (733)
+||||||||++||+.|++++.......... ..........++|+|++++.++|..|++++.+.++|++|+|+++.. ..
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~-~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~ 110 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPS-NIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLD 110 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCC-cccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcc
Confidence 999999999999999998775432211100 0111112245789999999999999999999999999999999864 46
Q ss_pred cHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCccccccceEecCCcCCCCCCcCCCC
Q 004724 341 SLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGG 420 (733)
Q Consensus 341 sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~~~Ki~~~V~FP~~LdL~~~~~~~~ 420 (733)
.|++++..|...+.++ |.|++|+.. .+.|+.+|.++|+||+||||||.+.. +....+.+ ..+++.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~~~~~-~~~~~~~~~~--- 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSDYLKK-NEEIMKKYCG--- 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccccccc-cccccccccC---
Confidence 7888888888776665 899999975 78899999999999999999997532 22222222 2456777764
Q ss_pred CCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC--CCCEEEEeCCceeeechhhhc---CCCcEEEEEE
Q 004724 421 DRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF--RGHWYRVDDCKVTSVDLEEVL---SQGAYMLLYN 484 (733)
Q Consensus 421 ~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~--~g~W~~fnDs~V~~v~~e~vl---~~~AYiLfY~ 484 (733)
....|+|+|||+|.|... ++|||+||+|.. .++||+|||+.|+++++++|+ +++||||||+
T Consensus 180 -~~~~Y~L~~VV~H~G~~~--~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 -TDAKYSLVAVICHLGESP--YDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred -CCceEEEEEEEEECCCCC--CCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 346799999999999742 239999999984 589999999999999999998 5799999995
No 24
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-41 Score=372.53 Aligned_cols=287 Identities=25% Similarity=0.446 Sum_probs=241.7
Q ss_pred CCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCC--ccCCCCchHHHHHHHHHHHHhccC-----------CCCCChH
Q 004724 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHR--KECGRDDWCFLCEFQTHVEKASQS-----------SHPFSPM 245 (733)
Q Consensus 179 p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~--~~~~~~~~~~l~~L~~lf~~l~~s-----------~~~isP~ 245 (733)
.+||.|+||+||||||||+|+.+|.|....+...+. ..+..+..+|.|+|.++...|... ...|+|.
T Consensus 307 ytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~ 386 (763)
T KOG0944|consen 307 YTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPL 386 (763)
T ss_pred ccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHH
Confidence 399999999999999999999999999888776222 233455678999999999888532 2478999
Q ss_pred HHHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccc
Q 004724 246 SILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQY 325 (733)
Q Consensus 246 ~ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~ 325 (733)
.|...+++-.+.|...+||||+|||.+||+.|.+..... ...+.++|.+.+..++.|..|.+++.++
T Consensus 387 mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~-------------~~nptd~frF~ve~Rv~C~~c~kVrYs~ 453 (763)
T KOG0944|consen 387 MFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS-------------LPNPTDLFRFEVEDRVSCLGCRKVRYSY 453 (763)
T ss_pred HHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc-------------CCCHHHHHHhhhhhhhhhhccccccccc
Confidence 999999999999999999999999999999997543211 1347899999999999999999999999
Q ss_pred cccccchhhccC-----CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCcc--c
Q 004724 326 ENMMDLTVEIHG-----DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRF--G 398 (733)
Q Consensus 326 E~f~~L~L~I~~-----~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~~--~ 398 (733)
+..+.|.|+++. ....+..||+.|+.+ .+++ |.|..|+.+..|.|+.+|.++|+||+||++||.+..+ +
T Consensus 454 ~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pk 529 (763)
T KOG0944|consen 454 ESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPK 529 (763)
T ss_pred hhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhhHhhcCccccccccccccCCceEEEEeeEEEecCceee
Confidence 999999999874 245999999999999 4443 9999999999999999999999999999999987544 7
Q ss_pred cccceEecCCcCCCCCCcCCC-----------------------------------------------------------
Q 004724 399 KLNKRVTFPETLDLSPYMSDG----------------------------------------------------------- 419 (733)
Q Consensus 399 Ki~~~V~FP~~LdL~~~~~~~----------------------------------------------------------- 419 (733)
|+...|++|+.|||+.|++.+
T Consensus 530 Kld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~ 609 (763)
T KOG0944|consen 530 KLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLME 609 (763)
T ss_pred eeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHH
Confidence 999999999999999886321
Q ss_pred --------------------------------------------------------------------------------
Q 004724 420 -------------------------------------------------------------------------------- 419 (733)
Q Consensus 420 -------------------------------------------------------------------------------- 419 (733)
T Consensus 610 HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~ 689 (763)
T KOG0944|consen 610 HMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSA 689 (763)
T ss_pred hccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCc
Confidence
Q ss_pred -----------CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhcCCCcEEEEEEEcC
Q 004724 420 -----------GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVS 487 (733)
Q Consensus 420 -----------~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R~~ 487 (733)
.+++..|+|+|+|+|.|+.. ++|||+|++|. .|+|+.|||++|- ..++-....+||+||+|..
T Consensus 690 ~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~--~sGHYV~hirK-egkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 690 IESESTPSGTGKDGPGKYALFAFISHMGTSA--HSGHYVCHIRK-EGKWVLFNDEKVA--ASQEPPKDLGYVYLYTRIA 763 (763)
T ss_pred chhhcCCcccCCCCCcceeEEEEEecCCCCC--CCcceEEEEee-cCcEEEEcchhhh--hccCChhhcceEEEEEecC
Confidence 12334799999999999854 45999999997 6999999999998 2233346789999999963
No 25
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-41 Score=380.40 Aligned_cols=307 Identities=34% Similarity=0.617 Sum_probs=266.6
Q ss_pred CCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCC-chHHHHHHHHHHHHhccC--CCCCChHHHHhhccc
Q 004724 177 FAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRD-DWCFLCEFQTHVEKASQS--SHPFSPMSILSRLPN 253 (733)
Q Consensus 177 ~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~-~~~~l~~L~~lf~~l~~s--~~~isP~~ll~~L~~ 253 (733)
.+.+||.|+|||||||++||.|.+.+..+...+...+..+.... ..++.+++.+++..++.. ..++.|..++..+++
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~k 238 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVWK 238 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHHH
Confidence 35689999999999999999999999999998888777555544 778999999999998764 578999999999999
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCC--CCCcccccccceeceeEEeEEEeCCCCCccccccccccc
Q 004724 254 IGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVP--PRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDL 331 (733)
Q Consensus 254 ~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~--~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L 331 (733)
..+.+.+++|||||||+..+++.+|.... ..+..... ....-.+++..+|.|.+.+.++|..|+..+..+++|++|
T Consensus 239 ~~~~~~g~~Qqda~eF~~~~~~~~~~~~~--~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~di 316 (492)
T KOG1867|consen 239 HSPNLAGYEQQDAHEFLIALLDRLHREKD--DCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDI 316 (492)
T ss_pred hCcccccccccchHHHHHHhccccccccc--ccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccce
Confidence 99999999999999999999999998761 11111111 112447899999999999999999999999999999999
Q ss_pred hhhccCC---------cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeec---Ccccc
Q 004724 332 TVEIHGD---------AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQS---GRFGK 399 (733)
Q Consensus 332 ~L~I~~~---------~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~---~~~~K 399 (733)
+|+|+.. ..++.+++..+...|.+....++.|..|+.+..++|++.|.++|.+|.+|++||.+ +...|
T Consensus 317 sL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~k 396 (492)
T KOG1867|consen 317 SLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREK 396 (492)
T ss_pred eeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccc
Confidence 9999743 15699999999999988888899999999999999999999999999999999985 33349
Q ss_pred ccceEecCCcCCCCCCcCCC-----CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhc
Q 004724 400 LNKRVTFPETLDLSPYMSDG-----GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVL 474 (733)
Q Consensus 400 i~~~V~FP~~LdL~~~~~~~-----~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl 474 (733)
+.+.|.||..|+|.+|+... +..+..|+|.|||+|+|..++ |||+||+|. .+.||+|||+.|+.+++++|+
T Consensus 397 i~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~S---GHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl 472 (492)
T KOG1867|consen 397 IDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGS---GHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVL 472 (492)
T ss_pred cCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCCC---CceEEEEEe-CCCcEEEcCeEEEEeeHHHhh
Confidence 99999999999999998742 235689999999999999655 999999997 888999999999999999999
Q ss_pred CCCcEEEEEEEcCCC
Q 004724 475 SQGAYMLLYNRVSAR 489 (733)
Q Consensus 475 ~~~AYiLfY~R~~~~ 489 (733)
+..||+|||.+....
T Consensus 473 ~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 473 SSQAYLLFYTQEQVE 487 (492)
T ss_pred hchhhheehhHHhhh
Confidence 999999999987543
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-40 Score=335.01 Aligned_cols=235 Identities=42% Similarity=0.703 Sum_probs=201.7
Q ss_pred CcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCCCC
Q 004724 181 GLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGY 260 (733)
Q Consensus 181 GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f~~ 260 (733)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccCC--
Q 004724 261 GRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGD-- 338 (733)
Q Consensus 261 g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~~-- 338 (733)
.||||+|||..+|+.|+.++...... ........+.+.++|.|.+...+.|..|+..+.....+..+.++++..
T Consensus 21 -~q~Da~E~l~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~ 96 (255)
T cd02257 21 -EQQDAHEFLLFLLDKLHEELKKSSKR---TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGL 96 (255)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccc---ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCC
Confidence 79999999999999999887543221 112233457899999999999999999998887777777788877754
Q ss_pred -cccHHHHHHhcccceecCCCCCcccCCCC--ccceeEEEEEeecCCceEEEEEeeeecC---ccccccceEecCCcCCC
Q 004724 339 -AASLEECLDQFTAKEWLDGDNMYKCDGCN--DYVKAWKRLTVRRAPNILTIALKRFQSG---RFGKLNKRVTFPETLDL 412 (733)
Q Consensus 339 -~~sLed~L~~~~~~E~L~g~n~y~C~~C~--~~~~a~K~~~I~~lP~vLiI~LkRF~~~---~~~Ki~~~V~FP~~LdL 412 (733)
..+|+++|+.++..|.+++ +.|..|+ ....+.++..|.++|++|+|+|+||.+. ...|++..|.||..|++
T Consensus 97 ~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~ 173 (255)
T cd02257 97 PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDL 173 (255)
T ss_pred CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccC
Confidence 5899999999999998887 7788887 6788899999999999999999999864 46799999999999999
Q ss_pred CCCcCC------CCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCC-CCEEEEeCCceeeechhhh-----cCCCcEE
Q 004724 413 SPYMSD------GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFR-GHWYRVDDCKVTSVDLEEV-----LSQGAYM 480 (733)
Q Consensus 413 ~~~~~~------~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~-g~W~~fnDs~V~~v~~e~v-----l~~~AYi 480 (733)
..++.. .......|+|+|||+|.|.... +|||+||+|... ++||+|||..|++++.+++ ....|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~--~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yl 251 (255)
T cd02257 174 SPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSAD--SGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYI 251 (255)
T ss_pred ccccccccccccccCCCccEEEEEEEEEecCCCC--CcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEE
Confidence 988742 3346678999999999998633 399999999865 9999999999999999999 4679999
Q ss_pred EEEE
Q 004724 481 LLYN 484 (733)
Q Consensus 481 LfY~ 484 (733)
|||+
T Consensus 252 l~Y~ 255 (255)
T cd02257 252 LFYE 255 (255)
T ss_pred EEEC
Confidence 9995
No 27
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-39 Score=358.45 Aligned_cols=306 Identities=34% Similarity=0.567 Sum_probs=242.7
Q ss_pred CCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccC-----C------------CCchHHHHHHHHHHHHhccCC
Q 004724 177 FAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKEC-----G------------RDDWCFLCEFQTHVEKASQSS 239 (733)
Q Consensus 177 ~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~-----~------------~~~~~~l~~L~~lf~~l~~s~ 239 (733)
+.-+||.|+|||||+|||+|+|..+|.|++.|......... . ...-.++.+|..+..+.....
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~k 282 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTK 282 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccC
Confidence 34589999999999999999999999999999875433210 0 011245667777666667788
Q ss_pred CCCChHHHHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhh--------hhhcCCCCC--------------CCCCCcc
Q 004724 240 HPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSIC--------LDEFGGEKA--------------VPPRSQE 297 (733)
Q Consensus 240 ~~isP~~ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l--------~~~~~~~~~--------------~~~~~~~ 297 (733)
..++|..|+..+....++|.+++||||||+|++|||.|..+- +..++++.. ..+....
T Consensus 283 sv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~ 362 (877)
T KOG1873|consen 283 SVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDL 362 (877)
T ss_pred CccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccC
Confidence 999999999999999999999999999999999999996542 111222111 1112233
Q ss_pred cccccceeceeEEeEEEeCCCCCccccccccccchhhccC----------------------------------------
Q 004724 298 TTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHG---------------------------------------- 337 (733)
Q Consensus 298 ~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~---------------------------------------- 337 (733)
..++..+|.|.+.+.+.|..|. ++...+.|.+.+++|-.
T Consensus 363 ~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~ 441 (877)
T KOG1873|consen 363 SLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELL 441 (877)
T ss_pred CcccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccccccc
Confidence 4556688999999999998888 55555666666655410
Q ss_pred -------C------------------------------------------------------------------------
Q 004724 338 -------D------------------------------------------------------------------------ 338 (733)
Q Consensus 338 -------~------------------------------------------------------------------------ 338 (733)
+
T Consensus 442 ~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~ 521 (877)
T KOG1873|consen 442 DSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANM 521 (877)
T ss_pred ccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccc
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 004724 339 -------------------------------------------------------------------------------- 338 (733)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (733)
T Consensus 522 ~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~ 601 (877)
T KOG1873|consen 522 DEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDK 601 (877)
T ss_pred cccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccc
Confidence
Q ss_pred ---------------------------------------------------------------------------cccHH
Q 004724 339 ---------------------------------------------------------------------------AASLE 343 (733)
Q Consensus 339 ---------------------------------------------------------------------------~~sLe 343 (733)
..+++
T Consensus 602 ~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq 681 (877)
T KOG1873|consen 602 TVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQ 681 (877)
T ss_pred cccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHH
Confidence 46899
Q ss_pred HHHHhcccceecCCCCCcccCCCCcc---------------------------ceeEEEEEeecCCceEEEEEeeeec--
Q 004724 344 ECLDQFTAKEWLDGDNMYKCDGCNDY---------------------------VKAWKRLTVRRAPNILTIALKRFQS-- 394 (733)
Q Consensus 344 d~L~~~~~~E~L~g~n~y~C~~C~~~---------------------------~~a~K~~~I~~lP~vLiI~LkRF~~-- 394 (733)
.||.+|++.|.|.|+|+|.|+.|.+. ..|.|++.|..+|+||+||||||..
T Consensus 682 ~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~ 761 (877)
T KOG1873|consen 682 RCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDI 761 (877)
T ss_pred HHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhh
Confidence 99999999999999999999999651 1357888999999999999999973
Q ss_pred -CccccccceEecCCcCCCCCCcCCCC-----CCcceeEEEEEEEEecCCCCCCCCeEEEEEEc----------------
Q 004724 395 -GRFGKLNKRVTFPETLDLSPYMSDGG-----DRTDVYKLYAVVVHVDMLNASFFGHYICYVKD---------------- 452 (733)
Q Consensus 395 -~~~~Ki~~~V~FP~~LdL~~~~~~~~-----~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~---------------- 452 (733)
++..|++..+.|++.+||.+||.... .....|+|+|||.|.|++.. |||++|+|.
T Consensus 762 ~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~---ghyvayv~~~t~~~~~~~~~~~~~~ 838 (877)
T KOG1873|consen 762 RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSY---GHYVAYVRGGTFLDLSAPSNSKDFE 838 (877)
T ss_pred hchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccccccC---CcchhhhhccchhhccCccccccch
Confidence 45689999999999999999986431 23468999999999998876 999999983
Q ss_pred -----CCCCEEEEeCCceeeechhhhcCCCcEEEEEEEc
Q 004724 453 -----FRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 486 (733)
Q Consensus 453 -----~~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R~ 486 (733)
+.|+||...|+.|+++++++|+..+||||||+|+
T Consensus 839 sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 839 SDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred hccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2578999999999999999999999999999996
No 28
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-38 Score=331.91 Aligned_cols=241 Identities=21% Similarity=0.329 Sum_probs=198.7
Q ss_pred hcccCCCCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHH
Q 004724 168 KLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSI 247 (733)
Q Consensus 168 ~~~~~~~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~l 247 (733)
++..|+++.+ +||.|.|.|||+||+||+|+++|+||+++. +.........|++|+|..|| ..+
T Consensus 6 df~~~n~t~~--~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~---~~~~~~~~~~~l~~el~~lf------------s~~ 68 (268)
T cd02672 6 DFEFYNKTNY--AGLENHITNSYCNSLLQLLYFIPPFRNFTA---IILVACPKESCLLCELGYLF------------STL 68 (268)
T ss_pred cccccccccc--cccccCCccchHHHHHHHHHhcHHHHHHHH---hhcccCCcCccHHHHHHHHH------------HHH
Confidence 3556888887 999999999999999999999999999832 23333455778999999999 111
Q ss_pred HhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccc
Q 004724 248 LSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYEN 327 (733)
Q Consensus 248 l~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~ 327 (733)
.+-|-++|++.+..+... .+ ..|++++.+.++
T Consensus 69 ------------------iq~F~~fll~~i~~~~~~--------------------~~----------~~C~~~s~~~~~ 100 (268)
T cd02672 69 ------------------IQNFTRFLLETISQDQLG--------------------TP----------FSCGTSRNSVSL 100 (268)
T ss_pred ------------------HHHHHHHHHHHHHHHhcc--------------------cC----------CCCCceeecccc
Confidence 245788888988754211 00 678999999999
Q ss_pred cccchhhccCC----cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCc----eEEEEEeeeecCc---
Q 004724 328 MMDLTVEIHGD----AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPN----ILTIALKRFQSGR--- 396 (733)
Q Consensus 328 f~~L~L~I~~~----~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~----vLiI~LkRF~~~~--- 396 (733)
|+.|+|+++.. ..+|+++|+.++..|.. +++.|++|++++.+.|+.+|+++|+ ||+||||||....
T Consensus 101 ~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~ 177 (268)
T cd02672 101 LYTLSLPLGSTKTSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDI 177 (268)
T ss_pred ceeeeeecCccccccCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhccc
Confidence 99999999842 46999999999998865 3589999999999999999999999 9999999997421
Q ss_pred ------cccccceEecCCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC-----CCCEEEEeCCce
Q 004724 397 ------FGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF-----RGHWYRVDDCKV 465 (733)
Q Consensus 397 ------~~Ki~~~V~FP~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~-----~g~W~~fnDs~V 465 (733)
..|++..|.||..+++..+...+......|+|+|||+|.|... .+|||+||+|.. .++||+|||..|
T Consensus 178 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~--~~GHyva~vk~~~~~~~~~~WylFND~~V 255 (268)
T cd02672 178 NVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSS--RGQHNVVFVIKVNEESTHGRWYLFNDFLV 255 (268)
T ss_pred CcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCC--CCCcEEEEEEccCCCCCCCcEEEecCeEE
Confidence 2478889999988877776666556678999999999999752 349999999974 578999999999
Q ss_pred eeechhhhcCCCcEEEEEE
Q 004724 466 TSVDLEEVLSQGAYMLLYN 484 (733)
Q Consensus 466 ~~v~~e~vl~~~AYiLfY~ 484 (733)
++|++ .||||||+
T Consensus 256 ~~vs~------~aYiLfY~ 268 (268)
T cd02672 256 TPVSE------LAYILLYQ 268 (268)
T ss_pred EEcCc------hheeeecC
Confidence 99988 89999995
No 29
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-39 Score=353.95 Aligned_cols=275 Identities=28% Similarity=0.488 Sum_probs=229.0
Q ss_pred CCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhcccc
Q 004724 175 PGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNI 254 (733)
Q Consensus 175 ~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~ 254 (733)
.+.+.+||+|..-|||||+.+|+|+-.|.|++.++-.. ...+....+.+.++.-
T Consensus 83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~--------------------------~~~~et~dlt~sfgw~ 136 (1203)
T KOG4598|consen 83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE--------------------------NDSLETKDLTQSFGWT 136 (1203)
T ss_pred CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC--------------------------cccccchhhHhhcCCC
Confidence 34456999999999999999999999999999886211 2223334444433321
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhh
Q 004724 255 GGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVE 334 (733)
Q Consensus 255 ~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~ 334 (733)
.-..++|+|.+|+.+.++|.|+..++ .+....+|.+++.|++...+.|..|+..+.+.+.|++|.|+
T Consensus 137 --s~ea~~qhdiqelcr~mfdalehk~k-----------~t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~ 203 (1203)
T KOG4598|consen 137 --SNEAYDQHDVQELCRLMFDALEHKWK-----------GTEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLA 203 (1203)
T ss_pred --cchhhhhhhHHHHHHHHHHHHHhhhc-----------CchHHHHHHHHhcchHHHHHHHHHcCccccccceeeccccc
Confidence 12335899999999999999975432 23456789999999999999999999999999999999999
Q ss_pred ccC-----CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC----ccccccceEe
Q 004724 335 IHG-----DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG----RFGKLNKRVT 405 (733)
Q Consensus 335 I~~-----~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~----~~~Ki~~~V~ 405 (733)
++. --.+++++|..|.++|.|+|.|+|-|++|+++++|.|.++|+.+|-+|+||||||.++ ...|+++++.
T Consensus 204 v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~t 283 (1203)
T KOG4598|consen 204 VKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMT 283 (1203)
T ss_pred ccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeeccccc
Confidence 862 1369999999999999999999999999999999999999999999999999999754 2369999999
Q ss_pred cCCcCCCCCCcCCC------------------------------------------------------------------
Q 004724 406 FPETLDLSPYMSDG------------------------------------------------------------------ 419 (733)
Q Consensus 406 FP~~LdL~~~~~~~------------------------------------------------------------------ 419 (733)
||..|||..|+...
T Consensus 284 fp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~ 363 (1203)
T KOG4598|consen 284 FPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVK 363 (1203)
T ss_pred CcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhh
Confidence 99999999987321
Q ss_pred CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechhhhc-------------CCCcEEEEEEE
Q 004724 420 GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLEEVL-------------SQGAYMLLYNR 485 (733)
Q Consensus 420 ~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e~vl-------------~~~AYiLfY~R 485 (733)
+.++..|+|++|.+|.|++.+ |||+||+|+ .+++||.|||.+|+-++.+++. +.+||||+|+|
T Consensus 364 ~sg~~~yelf~imihsg~a~g---ghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~ 440 (1203)
T KOG4598|consen 364 TSGDNVYELFSVMVHSGNAAG---GHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRR 440 (1203)
T ss_pred cCCccHHHhhhhheecCCCCC---ceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhh
Confidence 124458999999999998766 999999999 5689999999999999998884 23799999999
Q ss_pred cCCCCC
Q 004724 486 VSARPS 491 (733)
Q Consensus 486 ~~~~~~ 491 (733)
++....
T Consensus 441 id~krn 446 (1203)
T KOG4598|consen 441 IDPKRN 446 (1203)
T ss_pred cCcccc
Confidence 987644
No 30
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=323.45 Aligned_cols=289 Identities=22% Similarity=0.410 Sum_probs=240.4
Q ss_pred CCCcccCCCccchHHHHHHHhcCHHHHHHHHhcC--CCccCCCCchHHHHHHHHHHHHhccCC-----CCCChHHHHhhc
Q 004724 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKG--HRKECGRDDWCFLCEFQTHVEKASQSS-----HPFSPMSILSRL 251 (733)
Q Consensus 179 p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~--~~~~~~~~~~~~l~~L~~lf~~l~~s~-----~~isP~~ll~~L 251 (733)
.+||.|+||+||+||+||.|+....+..-+.... ....+..+..++.|+|.++...|.... ..+.|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 5899999999999999999998877665554433 333455667789999999999886543 568999999999
Q ss_pred cccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccc
Q 004724 252 PNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDL 331 (733)
Q Consensus 252 ~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L 331 (733)
+.-.+.|+..+||||+|||.+||+.|.+.. .....+.|..+|.+.+..++.|..|+.++..+++...+
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~------------~S~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i 450 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGE------------RSYLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMI 450 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhcc------------chhcCCCcchhhhhhhcceecccccccccccccceEEE
Confidence 999999999999999999999999997532 12234568899999999999999999999999999999
Q ss_pred hhhccCC--cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCcc--ccccceEecC
Q 004724 332 TVEIHGD--AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRF--GKLNKRVTFP 407 (733)
Q Consensus 332 ~L~I~~~--~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~~--~Ki~~~V~FP 407 (733)
.+++.++ ..++.++++.||.+++++ |.|+.|+.+..|.++..|++||++||+|..||....+ .|+..++.+.
T Consensus 451 ~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~ 526 (749)
T COG5207 451 CIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMR 526 (749)
T ss_pred EeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEc
Confidence 9988753 578999999999999998 9999999999999999999999999999999986544 5777777665
Q ss_pred --CcCCCCCCcCCC------------------------------------------------------------------
Q 004724 408 --ETLDLSPYMSDG------------------------------------------------------------------ 419 (733)
Q Consensus 408 --~~LdL~~~~~~~------------------------------------------------------------------ 419 (733)
..++++.||+.-
T Consensus 527 ~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP 606 (749)
T COG5207 527 SDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDP 606 (749)
T ss_pred cccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCC
Confidence 357777776420
Q ss_pred -----------------------------------------------------C----------------------CCcc
Q 004724 420 -----------------------------------------------------G----------------------DRTD 424 (733)
Q Consensus 420 -----------------------------------------------------~----------------------~~~~ 424 (733)
. ....
T Consensus 607 ~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~ 686 (749)
T COG5207 607 FVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAK 686 (749)
T ss_pred CCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccC
Confidence 0 0011
Q ss_pred eeEEEEEEEEecCCCCCCCCeEEEEEEc---CCCCEEEEeCCceeeechhhhcCCCcEEEEEEE
Q 004724 425 VYKLYAVVVHVDMLNASFFGHYICYVKD---FRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNR 485 (733)
Q Consensus 425 ~Y~L~aVV~H~G~~~ss~~GHY~a~vr~---~~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R 485 (733)
-|.|.|||+|.|+... .|||++|+|. ..-+|..|||+++..++.-+++..+.||+||+|
T Consensus 687 PYaLtAvI~HkG~s~h--aGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 687 PYALTAVICHKGDSIH--AGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred cccceeEEeccCCccc--ccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 4999999999998554 4999999997 234699999999999888888899999999998
No 31
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=371.99 Aligned_cols=308 Identities=28% Similarity=0.403 Sum_probs=262.4
Q ss_pred cCCCCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCC-CCChHHHHh
Q 004724 171 NWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSH-PFSPMSILS 249 (733)
Q Consensus 171 ~~~~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~-~isP~~ll~ 249 (733)
.|.+-.--|+||.|+||||||||+||+||.++.||+.++..........+...++.+||.+|..|..+.. ++.+..+..
T Consensus 162 d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~ 241 (1093)
T KOG1863|consen 162 DSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELTK 241 (1093)
T ss_pred hhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhhh
Confidence 3444444589999999999999999999999999999998874232233334488899999999998876 999999999
Q ss_pred hccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccc
Q 004724 250 RLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMM 329 (733)
Q Consensus 250 ~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~ 329 (733)
.+.... ....+|||++||++.|+|.|+..+.... ....|.++|.|.+.+.+.|..|...+.+.|.|+
T Consensus 242 ~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~-----------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~ 308 (1093)
T KOG1863|consen 242 SLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK-----------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFL 308 (1093)
T ss_pred hhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh-----------hhhhhhhhhcCCcceEEEEEeeeeecccccccc
Confidence 887765 5567999999999999999987764322 245689999999999999999999999999999
Q ss_pred cchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeec----CccccccceEe
Q 004724 330 DLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQS----GRFGKLNKRVT 405 (733)
Q Consensus 330 ~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~----~~~~Ki~~~V~ 405 (733)
++.+++.+ ..+|.++|+.|+..|.++|+|+ .|.+|...+.|.+...+.+||++|.|||+||.+ +...|++.++.
T Consensus 309 d~ql~~~g-~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~ 386 (1093)
T KOG1863|consen 309 DLQLNGKG-VKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFE 386 (1093)
T ss_pred Cccccccc-hhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccC
Confidence 99999986 6889999999999999999998 899999999999999999999999999999986 34579999999
Q ss_pred cCCcCCCCCCcCC--C--CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechhhhcCC----
Q 004724 406 FPETLDLSPYMSD--G--GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLEEVLSQ---- 476 (733)
Q Consensus 406 FP~~LdL~~~~~~--~--~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e~vl~~---- 476 (733)
||..|+|.+|+.. . ..+...|+|.||++|.|...+ |||++|++. ..++|++|||..|+.++..+++..
T Consensus 387 fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~---ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~ 463 (1093)
T KOG1863|consen 387 FPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHS---GHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGT 463 (1093)
T ss_pred CccccccchhccccchhhhhccceeccchhhcccccccC---ccceeeecchhhccceeccCceeeeccHHHHHHhhCCC
Confidence 9999999999873 1 123359999999999776655 999999996 579999999999999998887632
Q ss_pred ------------CcEEEEEEEcCCCCCCcccC
Q 004724 477 ------------GAYMLLYNRVSARPSYLVDT 496 (733)
Q Consensus 477 ------------~AYiLfY~R~~~~~~~~~~~ 496 (733)
.||||+|.|.+.......++
T Consensus 464 ~~~~~~~~~~~~~~~~lv~~~~s~~~~~~~~v 495 (1093)
T KOG1863|consen 464 EEIELSSTADFKNAYMLVYIRDSCESKILKDI 495 (1093)
T ss_pred cchhhhcccccCCcceEEEEecCcHHhhhccc
Confidence 28999999998776655543
No 32
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-37 Score=364.96 Aligned_cols=305 Identities=31% Similarity=0.540 Sum_probs=260.9
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCC-----CCchHHHHHHHHHHHHhccCCC-CCChHHHHhhc
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECG-----RDDWCFLCEFQTHVEKASQSSH-PFSPMSILSRL 251 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~-----~~~~~~l~~L~~lf~~l~~s~~-~isP~~ll~~L 251 (733)
+-+||.|+|||||||+.+|+|.+.++++++++......+.. ...-.+...+..+...++.... .+.|..+...+
T Consensus 245 g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~~ 324 (842)
T KOG1870|consen 245 GETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTSL 324 (842)
T ss_pred cccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhhh
Confidence 44999999999999999999999999999998765444111 1112344556677777776654 68999999999
Q ss_pred cccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCC------------------CCCCCCcccccccceeceeEEeEE
Q 004724 252 PNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEK------------------AVPPRSQETTLIQHIFGGHLQSQV 313 (733)
Q Consensus 252 ~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~------------------~~~~~~~~~siI~~lF~G~l~s~i 313 (733)
..+.+.|.++.|||.+||+.+|+|.+|+.+........ +........++|.++|.|.+++.+
T Consensus 325 ~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~ 404 (842)
T KOG1870|consen 325 ASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTL 404 (842)
T ss_pred hhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceecccc
Confidence 99999999999999999999999999998754332200 011124567899999999999999
Q ss_pred EeCCCCCccccccccccchhhccCC-------------------------------------------------------
Q 004724 314 ICSKCNNISNQYENMMDLTVEIHGD------------------------------------------------------- 338 (733)
Q Consensus 314 ~C~~C~~~s~~~E~f~~L~L~I~~~------------------------------------------------------- 338 (733)
.|..|++++.++++|.+|+++++..
T Consensus 405 ~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i~ 484 (842)
T KOG1870|consen 405 QCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEIL 484 (842)
T ss_pred cCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhcccceec
Confidence 9999999999999999999887511
Q ss_pred --------------------------------------------------------------------------------
Q 004724 339 -------------------------------------------------------------------------------- 338 (733)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (733)
T Consensus 485 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t 564 (842)
T KOG1870|consen 485 FDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQST 564 (842)
T ss_pred cchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 004724 339 -------------------------------------------------------------------------------- 338 (733)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (733)
T Consensus 565 ~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (842)
T KOG1870|consen 565 EEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLESR 644 (842)
T ss_pred ccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccccccccccc
Confidence
Q ss_pred --------------------------------------------------cccHHHHHHhcccceecCCCCCcccCCCCc
Q 004724 339 --------------------------------------------------AASLEECLDQFTAKEWLDGDNMYKCDGCND 368 (733)
Q Consensus 339 --------------------------------------------------~~sLed~L~~~~~~E~L~g~n~y~C~~C~~ 368 (733)
..+|++||+.|+.+|.|..+++|.|++|++
T Consensus 645 ~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke 724 (842)
T KOG1870|consen 645 NKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKE 724 (842)
T ss_pred ccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHHH
Confidence 357999999999999999999999999999
Q ss_pred cceeEEEEEeecCCceEEEEEeeeecCcc--ccccceEecC-CcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCe
Q 004724 369 YVKAWKRLTVRRAPNILTIALKRFQSGRF--GKLNKRVTFP-ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGH 445 (733)
Q Consensus 369 ~~~a~K~~~I~~lP~vLiI~LkRF~~~~~--~Ki~~~V~FP-~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GH 445 (733)
++.|.|++.+++||+|||||||||++.+. .|+.+.|+|| ..||+++|+..... ..|+|+||++|+|.+.+ ||
T Consensus 725 ~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~~---GH 799 (842)
T KOG1870|consen 725 LRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLSG---GH 799 (842)
T ss_pred HHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcCC---cc
Confidence 99999999999999999999999997544 6999999999 68999999987654 89999999999998766 99
Q ss_pred EEEEEEc-CCCCEEEEeCCceeeechhhhcCCCcEEEEEEEcC
Q 004724 446 YICYVKD-FRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVS 487 (733)
Q Consensus 446 Y~a~vr~-~~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R~~ 487 (733)
|+||.|. .+++||.|||+.|.+++++++.++.||+|||+|++
T Consensus 800 Yta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 800 YTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred hhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 9999999 68999999999999999999999999999999974
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=1.4e-32 Score=294.18 Aligned_cols=277 Identities=22% Similarity=0.381 Sum_probs=232.4
Q ss_pred CCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhc-cC-CCCCChHHHHhhccccCCC
Q 004724 180 CGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKAS-QS-SHPFSPMSILSRLPNIGGN 257 (733)
Q Consensus 180 ~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~-~s-~~~isP~~ll~~L~~~~~~ 257 (733)
.||.|.+++||+||+||+|+++|++|+.++... + .....|++|+|.-+|.+|. .+ .....+.+|+++|+.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~-c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---E-CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---C-CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 599999999999999999999999999999876 2 4557899999999999998 54 4567889999999988765
Q ss_pred CCCCCcCCHHHHHHHHHHHHhhhhhhhcCCC--CCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhc
Q 004724 258 LGYGRQEDAHEFMRFAIDTMQSICLDEFGGE--KAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEI 335 (733)
Q Consensus 258 f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~--~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I 335 (733)
...+.|+|.++|+++|+++|+.+++...... ..........+.|.++|+.......+|..|+..+.+.+....+.+..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 6667799999999999999999876543221 11122334567899999999999999999999998888888877777
Q ss_pred cC--CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc--cccccceEecCCcCC
Q 004724 336 HG--DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR--FGKLNKRVTFPETLD 411 (733)
Q Consensus 336 ~~--~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~--~~Ki~~~V~FP~~Ld 411 (733)
+. ...++.+.|+.++..|.... ..|++|++......+.+|.+||+||.|.++|+.... ..|+...+.+|..++
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~ 233 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSIN 233 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeee
Confidence 54 35799999999999888875 899999999999999999999999999999987542 368888999999999
Q ss_pred CCCCcCCC-------CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC---CCCEEEEeCCce
Q 004724 412 LSPYMSDG-------GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF---RGHWYRVDDCKV 465 (733)
Q Consensus 412 L~~~~~~~-------~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~---~g~W~~fnDs~V 465 (733)
+..++... ..+..+|+|.|+|+|.|.... .|||++|||.. +.+||.|||..|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~--~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 234 LPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIE--SGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ccccccccccccccCCCCceEEEEEEEEEEecCCCC--CCceEEEEEcCCCCCCcEEEECcEeC
Confidence 98887543 346679999999999998544 49999999974 469999999765
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.98 E-value=2e-32 Score=282.98 Aligned_cols=195 Identities=25% Similarity=0.419 Sum_probs=153.2
Q ss_pred CcccCCC-ccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCCC
Q 004724 181 GLLNCGN-SCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLG 259 (733)
Q Consensus 181 GL~NlGN-TCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f~ 259 (733)
|++|.+| +|||.|+|-+||.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 8899999 9999999999986
Q ss_pred CCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceece-eEEeEEEeCCCCCccccccccccchhhccC-
Q 004724 260 YGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGG-HLQSQVICSKCNNISNQYENMMDLTVEIHG- 337 (733)
Q Consensus 260 ~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G-~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~- 337 (733)
+|||+.||+.+|++.|...++. +.-++|.| +..... . +...|.|+.|.++...
T Consensus 22 --~q~D~~e~~~~l~~~~~~~~~~----------------~~~~~~~~g~~~~~~------~-~~~~e~~l~l~ip~~~~ 76 (241)
T cd02670 22 --EQQDPEEFFNFITDKLLMPLLE----------------PKVDIIHGGKKDQDD------D-KLVNERLLQIPVPDDDD 76 (241)
T ss_pred --HhcCHHHHHHHHHHHHhhhhhh----------------HHHHHHhcCcccccc------c-cccccceEEeecccCCC
Confidence 7999999999999999754332 13344443 222111 0 3345677777777642
Q ss_pred -CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc--cccccceEecCCcCCCCC
Q 004724 338 -DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR--FGKLNKRVTFPETLDLSP 414 (733)
Q Consensus 338 -~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~--~~Ki~~~V~FP~~LdL~~ 414 (733)
...+|++||+.|+..|. |.++|++|+||||||.++. ..|+++.|.||..|||.+
T Consensus 77 ~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~ 133 (241)
T cd02670 77 GGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPD 133 (241)
T ss_pred CCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchh
Confidence 46899999999998875 8899999999999998744 579999999999999999
Q ss_pred CcCCC----------------------CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCC------------CCEEEE
Q 004724 415 YMSDG----------------------GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFR------------GHWYRV 460 (733)
Q Consensus 415 ~~~~~----------------------~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~------------g~W~~f 460 (733)
|+... ......|+|+|||+|.|.... +|||+||+|... ++||+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~--sGHYva~vr~~~~~~~~~~~~~~~~~W~~F 211 (241)
T cd02670 134 FVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLE--TGHYVAFVRYGSYSLTETDNEAYNAQWVFF 211 (241)
T ss_pred hcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCC--CcCeEEEEECCcccccccccCCCCCeEEEe
Confidence 98553 123568999999999997422 399999999853 789999
Q ss_pred eCCceeeechh------hhcCCCcEEEEEE
Q 004724 461 DDCKVTSVDLE------EVLSQGAYMLLYN 484 (733)
Q Consensus 461 nDs~V~~v~~e------~vl~~~AYiLfY~ 484 (733)
||..|+.+... .+.++.||||||+
T Consensus 212 DD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 212 DDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred cCcccccccccccccchhcccCCceEEEeC
Confidence 99998876432 4568899999996
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-32 Score=308.10 Aligned_cols=306 Identities=29% Similarity=0.457 Sum_probs=246.5
Q ss_pred CCcccCCCccchH--HHHHHHhcCHHHHHHHHhcCCCccCC-CCchHHHHHHHHHHHHhc---cCCCCCChHHHHhhccc
Q 004724 180 CGLLNCGNSCFAN--VVLQCLTYTRPLVAYLLEKGHRKECG-RDDWCFLCEFQTHVEKAS---QSSHPFSPMSILSRLPN 253 (733)
Q Consensus 180 ~GL~NlGNTCYlN--SvLQ~L~~ip~fr~~Ll~~~~~~~~~-~~~~~~l~~L~~lf~~l~---~s~~~isP~~ll~~L~~ 253 (733)
-|..|.+++|+.| ++.|.++.+.+++...+......... .....++..+..++.... .....+.|..++..+++
T Consensus 233 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~~~ 312 (587)
T KOG1864|consen 233 FGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDLIK 312 (587)
T ss_pred cCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhhhh
Confidence 5889999999999 99999999998886554332221111 011223333333333332 23456799999999999
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCC-C--------CC------------CcccccccceeceeEEeE
Q 004724 254 IGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAV-P--------PR------------SQETTLIQHIFGGHLQSQ 312 (733)
Q Consensus 254 ~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~-~--------~~------------~~~~siI~~lF~G~l~s~ 312 (733)
....|..+.|||||||+.++++.+++....+..++... . .. .....+++.+|.|++..+
T Consensus 313 ~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~~e 392 (587)
T KOG1864|consen 313 ENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILTNE 392 (587)
T ss_pred cCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeeeee
Confidence 99999999999999999999999988765443211110 0 01 225678999999999999
Q ss_pred EEeCCCCCccccccccccchhhccC-CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEee
Q 004724 313 VICSKCNNISNQYENMMDLTVEIHG-DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKR 391 (733)
Q Consensus 313 i~C~~C~~~s~~~E~f~~L~L~I~~-~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkR 391 (733)
++|..|+..+.+.+.|.++.+++.. ...++..+|..|..+|.+.|+++|.|++|...+.|.+++.++++|.+|+|||||
T Consensus 393 t~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkr 472 (587)
T KOG1864|consen 393 TRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKR 472 (587)
T ss_pred eeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhc
Confidence 9999999999999999999999974 468999999999999999999999999999999999999999999999999999
Q ss_pred eecC----ccccccceEecCCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceee
Q 004724 392 FQSG----RFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTS 467 (733)
Q Consensus 392 F~~~----~~~Ki~~~V~FP~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~ 467 (733)
|.++ +..|+...|.||..|.+.....+...+...|+|+|||+|.|..-. .|||+||+|..+-.|+.|||+.|+.
T Consensus 473 fk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~--~GHYia~~r~~~~nWl~fdD~~V~~ 550 (587)
T KOG1864|consen 473 FKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPN--RGHYVAYVKSLDFNWLLFDDDNVEP 550 (587)
T ss_pred cccccccccccccccccccccceeeccccccccCccceeeEEEEEEeccCCCC--CcceEEEEeeCCCCceecccccccc
Confidence 9865 346999999999999998877766555689999999999998544 5999999998555599999999999
Q ss_pred echhhhcC---CCcEEEEEEEcC
Q 004724 468 VDLEEVLS---QGAYMLLYNRVS 487 (733)
Q Consensus 468 v~~e~vl~---~~AYiLfY~R~~ 487 (733)
++.+.|.. ...|+++|...-
T Consensus 551 ~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 551 ISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred cCcchhhhccCCCccceeeeEEe
Confidence 99998864 467787777654
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=267.16 Aligned_cols=304 Identities=28% Similarity=0.397 Sum_probs=224.7
Q ss_pred CCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCC-CCchHHHHHHHHHHHHhcc------------------
Q 004724 177 FAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECG-RDDWCFLCEFQTHVEKASQ------------------ 237 (733)
Q Consensus 177 ~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~-~~~~~~l~~L~~lf~~l~~------------------ 237 (733)
..|+|+.|-||-|||||+||+|..|+||.+.+.......... .....++.++..+......
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 679999999999999999999999999999886544211111 1122344444444332220
Q ss_pred -----------CCCCCChHHHHhhccccC--CCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCC------C-------C--
Q 004724 238 -----------SSHPFSPMSILSRLPNIG--GNLGYGRQEDAHEFMRFAIDTMQSICLDEFGG------E-------K-- 289 (733)
Q Consensus 238 -----------s~~~isP~~ll~~L~~~~--~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~------~-------~-- 289 (733)
...++-|..+...+.... ....+|+|+||.|||..+||.||+++.+.... + .
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~~ 185 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINNG 185 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccccc
Confidence 012233444444444433 34677999999999999999999987521100 0 0
Q ss_pred ---CC--------------------------CCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccC-Cc
Q 004724 290 ---AV--------------------------PPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHG-DA 339 (733)
Q Consensus 290 ---~~--------------------------~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~-~~ 339 (733)
.. .......++|.++|+|++++.+.-.. .+++...+||..|.|+|.. +.
T Consensus 186 n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~i 264 (420)
T KOG1871|consen 186 NLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEKI 264 (420)
T ss_pred ccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeecccc
Confidence 00 00112347899999999999887654 5677899999999999952 46
Q ss_pred ccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeec---CccccccceEecCCcCCCCCCc
Q 004724 340 ASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQS---GRFGKLNKRVTFPETLDLSPYM 416 (733)
Q Consensus 340 ~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~---~~~~Ki~~~V~FP~~LdL~~~~ 416 (733)
.+++++|..+...|.+.+ |.-. -+..+.+.+++.+.+||++|++|++||.+ +..+|+.+.+++|-.+.+..-+
T Consensus 265 ~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~ 340 (420)
T KOG1871|consen 265 HSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNC 340 (420)
T ss_pred CCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhh
Confidence 899999999999999986 5443 57788999999999999999999999974 5678999999999777765432
Q ss_pred C-CC-----CCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechhhhcC----CCcEEEEEEE
Q 004724 417 S-DG-----GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLEEVLS----QGAYMLLYNR 485 (733)
Q Consensus 417 ~-~~-----~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e~vl~----~~AYiLfY~R 485 (733)
- .+ ..-...|+|.+||.|.|.... .|||+..+.+ ....|+++||..|..+..++|+. .+||+|+|+|
T Consensus 341 ~s~gvk~~~~~~~~~yks~~vvyhtgtsat--vghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~ 418 (420)
T KOG1871|consen 341 FSQGLKIRILIATRPYKSLAVVYHTGTSAT--VGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIE 418 (420)
T ss_pred hccccchhhhccccccceEEEEEecccccc--cCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeee
Confidence 1 11 223457999999999998654 5999999987 55779999999999999999974 5899999998
Q ss_pred cC
Q 004724 486 VS 487 (733)
Q Consensus 486 ~~ 487 (733)
.+
T Consensus 419 ~d 420 (420)
T KOG1871|consen 419 AD 420 (420)
T ss_pred cC
Confidence 63
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-30 Score=280.46 Aligned_cols=294 Identities=23% Similarity=0.270 Sum_probs=229.5
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCC---CchHHHHHHHHHHHHhccCCCCCChHHHHhhcccc
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGR---DDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNI 254 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~---~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~ 254 (733)
-|+||.|+|||||||+.+|+|..+|+++..+........... ...-+..+++.+|..+..+ .++.|..+++.+...
T Consensus 104 lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~~~ 182 (473)
T KOG1872|consen 104 LPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLSSQ 182 (473)
T ss_pred CCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHH
Confidence 468999999999999999999999999888765442222111 1234677889999999888 999999999999888
Q ss_pred CCCCCC------CCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCcccc--cc
Q 004724 255 GGNLGY------GRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQ--YE 326 (733)
Q Consensus 255 ~~~f~~------g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~--~E 326 (733)
.+.|.. +.||||.|++..++-.+++.+..... .......+..+|++.+..+..|.+-...... .|
T Consensus 183 ~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~-------~~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E 255 (473)
T KOG1872|consen 183 YPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE-------APCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRE 255 (473)
T ss_pred hHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccc-------ccchhHHHHHhhccccccceeeccCcccccccccc
Confidence 877643 78999999999999999876432111 1134567889999999999999887655444 78
Q ss_pred ccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc----cccccc
Q 004724 327 NMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR----FGKLNK 402 (733)
Q Consensus 327 ~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~----~~Ki~~ 402 (733)
.|..|.+.|......+...|+.-+.++.- -.-+.-+......|.+.|.+||.+|+|++.||.++. ..|+-+
T Consensus 256 ~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~-----K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~ 330 (473)
T KOG1872|consen 256 LVDQLKCIINKTVHDMRFGLKSGLSEEIQ-----KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILN 330 (473)
T ss_pred cccccceEEeeeechhhhhhhhhhhhhhh-----ccCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHH
Confidence 89999999987777777777655543322 222333444556688899999999999999998753 358889
Q ss_pred eEecCCcCCCCCCcCCC-------------------------------------------------CCC-cceeEEEEEE
Q 004724 403 RVTFPETLDLSPYMSDG-------------------------------------------------GDR-TDVYKLYAVV 432 (733)
Q Consensus 403 ~V~FP~~LdL~~~~~~~-------------------------------------------------~~~-~~~Y~L~aVV 432 (733)
.|.||..||..++++.. ... ...|+|+|||
T Consensus 331 ~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vi 410 (473)
T KOG1872|consen 331 AVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVI 410 (473)
T ss_pred hccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEee
Confidence 99999999998887531 011 4579999999
Q ss_pred EEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhcC-------CCcEEEEEEEc
Q 004724 433 VHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLS-------QGAYMLLYNRV 486 (733)
Q Consensus 433 ~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl~-------~~AYiLfY~R~ 486 (733)
.|.|....+ |||++|+|...+.|++|||..|+-+..+.++. ..||+|+|.-+
T Consensus 411 thkgrss~s--ghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 411 THKGRSSKS--GHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred eccccccCC--CcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 999986654 99999999988899999999999999988863 37999999765
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.91 E-value=1.8e-24 Score=227.17 Aligned_cols=279 Identities=21% Similarity=0.324 Sum_probs=216.9
Q ss_pred CCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccC---CCCCChHHHHhhccccC-
Q 004724 180 CGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQS---SHPFSPMSILSRLPNIG- 255 (733)
Q Consensus 180 ~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s---~~~isP~~ll~~L~~~~- 255 (733)
+||.|+.++=|+|++||+|.+.+|+|+|++..... .+....+...|..+++++|.. ...++|.++++++....
T Consensus 135 VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~---~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~ 211 (442)
T KOG2026|consen 135 VGLNNIKANDYANAVLQALSHVVPLRNYFLLEENY---FDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSK 211 (442)
T ss_pred eccchhhhHHHHHHHHHHHhccchhhhhhcccccc---cchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999865331 223345777888889999876 47899999999887765
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCC----CCCccccccccccc
Q 004724 256 GNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSK----CNNISNQYENMMDL 331 (733)
Q Consensus 256 ~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~----C~~~s~~~E~f~~L 331 (733)
..|..++|-|+.|||.+||+.||..+.. . ...++||+..|+|.++...+=.. -.......-+|+.|
T Consensus 212 k~f~i~~q~DpveFlswllntlhs~l~~----~------k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~L 281 (442)
T KOG2026|consen 212 KRFRIGQQSDPVEFLSWLLNTLHSDLRG----S------KKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYL 281 (442)
T ss_pred hheecCCCCCHHHHHHHHHHHHHHHhCC----C------CCchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEE
Confidence 5689999999999999999999987532 1 13468999999999987654332 11122334599999
Q ss_pred hhhccCC-------------cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCcc-
Q 004724 332 TVEIHGD-------------AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRF- 397 (733)
Q Consensus 332 ~L~I~~~-------------~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~~- 397 (733)
+|+++.. ...|-+.|..|.....-+ +. ....+ +++++.++|++||+|++||..+++
T Consensus 282 tLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f 351 (442)
T KOG2026|consen 282 TLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFKKNNFF 351 (442)
T ss_pred EecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeeccccCcc
Confidence 9999731 357788888776543322 11 11223 788999999999999999987665
Q ss_pred -ccccceEecC-CcCCCCCCcCC---CCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechh
Q 004724 398 -GKLNKRVTFP-ETLDLSPYMSD---GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLE 471 (733)
Q Consensus 398 -~Ki~~~V~FP-~~LdL~~~~~~---~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e 471 (733)
.|+.+-++|| ..+++.++... .......|.|.|-++|.- .. |||...+++ ..++||.++|-.|++...+
T Consensus 352 ~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~--e~---~~~riqi~~~~s~kW~eiqdl~v~e~~~q 426 (442)
T KOG2026|consen 352 KEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHED--ED---GNFRIQIYDNSSEKWYEIQDLHVTERLPQ 426 (442)
T ss_pred cccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcCc--cc---CceEEEEEeCCCcceEEecccchhhhhhH
Confidence 6999999999 56666554432 233447899999999973 33 999999998 6789999999999999999
Q ss_pred hhcCCCcEEEEEEEc
Q 004724 472 EVLSQGAYMLLYNRV 486 (733)
Q Consensus 472 ~vl~~~AYiLfY~R~ 486 (733)
.+.-..+||-+|++.
T Consensus 427 mi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 427 MIFLKESFIQIWEKQ 441 (442)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998874
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.79 E-value=1.7e-18 Score=197.23 Aligned_cols=303 Identities=19% Similarity=0.302 Sum_probs=209.3
Q ss_pred hcccCCCCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccC-CCCCChHH
Q 004724 168 KLFNWDKPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQS-SHPFSPMS 246 (733)
Q Consensus 168 ~~~~~~~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s-~~~isP~~ 246 (733)
.+..++++.+ +||.-.+-+-|.|++||.|+++|++|.+++.. ......|++|+|.-||.+|..+ ..+....+
T Consensus 490 DF~~~NqT~y--aGLe~~i~N~YcNamiQllyfl~~~r~~vl~H-----~C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~N 562 (1118)
T KOG1275|consen 490 DFQDYNQTTY--AGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH-----ICTKEFCLLCELGFLFTMLDSSTGDPCQANN 562 (1118)
T ss_pred CCccccccee--eccCCCCchHHHHHHHHHHHhccHHHHHHHcC-----ccchhHHHHHHHHHHHHHHhhhcCCccchhH
Confidence 3456788888 99999999999999999999999999999876 2345689999999999999765 45778889
Q ss_pred HHhhccccCCCCCCC-----C-----------cCCHHHHHHHHHHHHhhhhhhhcC--CCCCCC---CCCccccccccee
Q 004724 247 ILSRLPNIGGNLGYG-----R-----------QEDAHEFMRFAIDTMQSICLDEFG--GEKAVP---PRSQETTLIQHIF 305 (733)
Q Consensus 247 ll~~L~~~~~~f~~g-----~-----------QqDA~EFL~~LLd~L~e~l~~~~~--~~~~~~---~~~~~~siI~~lF 305 (733)
|+++++........| . -|||.-|......... .+.+..+ ...... ........+.+.|
T Consensus 563 Flraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~-d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F 641 (1118)
T KOG1275|consen 563 FLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHL-DCQDCRGLQQSESVDGESFKVNYAPVLQQSF 641 (1118)
T ss_pred HHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhh-hHHHhhhhhhhhcccCceeeecchhHHHHHh
Confidence 999887665321111 1 1233333222221111 1111000 000000 1122346889999
Q ss_pred ceeEEeEEEeCCCCCccccccccccchhhccC--------CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEE
Q 004724 306 GGHLQSQVICSKCNNISNQYENMMDLTVEIHG--------DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLT 377 (733)
Q Consensus 306 ~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~--------~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~ 377 (733)
+-.+.....|..|+....+.-....+.+..+. ....+.+.|++-.. +...-+-.|+.|++......+..
T Consensus 642 ~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~---l~kn~~~~C~~C~k~ep~~q~~~ 718 (1118)
T KOG1275|consen 642 CQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLS---LFKNKQAWCETCTKPEPTSQKKN 718 (1118)
T ss_pred hhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhh---cccccccccccccCCCCcccccc
Confidence 99999999999999887666544444444432 12233344433221 22222368999999999999999
Q ss_pred eecCCceEEEEEeeeecC------ccccccceEecCCcCCCCCCcCC------------------CCCCcceeEEEEEEE
Q 004724 378 VRRAPNILTIALKRFQSG------RFGKLNKRVTFPETLDLSPYMSD------------------GGDRTDVYKLYAVVV 433 (733)
Q Consensus 378 I~~lP~vLiI~LkRF~~~------~~~Ki~~~V~FP~~LdL~~~~~~------------------~~~~~~~Y~L~aVV~ 433 (733)
+..||.+|.|...-+..+ +..|....|.+|+.+-|..--.. .......|+|.|+|+
T Consensus 719 vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vYeL~a~V~ 798 (1118)
T KOG1275|consen 719 VRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVYELDAMVH 798 (1118)
T ss_pred cccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEEEeeeEEE
Confidence 999999999998887532 23467778889977766432110 122347899999999
Q ss_pred EecCCCCCCCCeEEEEEEc---------CCCCEEEEeCCceeeechhhhc-----CCCcEEEEE
Q 004724 434 HVDMLNASFFGHYICYVKD---------FRGHWYRVDDCKVTSVDLEEVL-----SQGAYMLLY 483 (733)
Q Consensus 434 H~G~~~ss~~GHY~a~vr~---------~~g~W~~fnDs~V~~v~~e~vl-----~~~AYiLfY 483 (733)
|.|..++. +|++++||- .+.+||.|||-.|.+|++++++ ...+-||+|
T Consensus 799 ~I~d~~~e--~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 799 AIGDNENE--VNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred EeccCCCc--cceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 99987554 999999984 2368999999999999999997 357999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.94 E-value=3.5e-09 Score=107.95 Aligned_cols=222 Identities=18% Similarity=0.321 Sum_probs=128.8
Q ss_pred ccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhcc-----CCCC-------CChHHHHhh
Q 004724 183 LNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQ-----SSHP-------FSPMSILSR 250 (733)
Q Consensus 183 ~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~-----s~~~-------isP~~ll~~ 250 (733)
.|.-|.|||.++|=+|.|+..+++.+-+...... +.+..|...+.+... .... ..+..++.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~~~e~------s~~~~L~~~Y~qa~~ll~~~q~~~~~~~~~~~~~~~~l~- 78 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELCSKEE------SVFWRLFTKYNQANKLLHTCQLDGVKDDDCKKVPSEILA- 78 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhccccc------cHHHHHHHHHHHHHHHHHhhhhcCCCCcccccCchHHHH-
Confidence 4788999999999999999999999865322211 233333333332210 0010 11111111
Q ss_pred ccccCCCCCCCCcCCHHHHHH----HHHHHHhhhhhhhcCCCCC----CCCCCcccccccceeceeEEeEEEeCCCCCcc
Q 004724 251 LPNIGGNLGYGRQEDAHEFMR----FAIDTMQSICLDEFGGEKA----VPPRSQETTLIQHIFGGHLQSQVICSKCNNIS 322 (733)
Q Consensus 251 L~~~~~~f~~g~QqDA~EFL~----~LLd~L~e~l~~~~~~~~~----~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s 322 (733)
+|...|. .+++.|+-.+.-+.|.... .+..-.....+.++|.-.+.-...|..||+..
T Consensus 79 --------------~ae~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~~ 144 (275)
T PF15499_consen 79 --------------KAETCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHKY 144 (275)
T ss_pred --------------HHHHHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCChh
Confidence 2222232 2333333222222221111 01112345678999999999999999999753
Q ss_pred c-----cccccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCcc
Q 004724 323 N-----QYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRF 397 (733)
Q Consensus 323 ~-----~~E~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~~ 397 (733)
. +.-.|..+.-+... +....---|.+|+.+. ..++|.+.++|+|+++|+. .|-.
T Consensus 145 ~~R~~K~L~TFtnv~pdwhP-----------------LnA~h~~pCn~C~~ks-Q~rkMvlekv~~vfmLHFV---eGLP 203 (275)
T PF15499_consen 145 QNRCTKTLVTFTNVIPDWHP-----------------LNAVHFGPCNSCNSKS-QRRKMVLEKVPPVFMLHFV---EGLP 203 (275)
T ss_pred hhhheeeecccCCCCCCCCc-----------------ccccccCCCcccCChH-HhHhhhhhcCchhhhhhhh---ccCC
Confidence 2 22233333322211 2222224699998754 4677899999999999953 3322
Q ss_pred ccccceEecCCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCc
Q 004724 398 GKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCK 464 (733)
Q Consensus 398 ~Ki~~~V~FP~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~ 464 (733)
.+.-....| . -....|++.+||.+.-.. -|+++|+++.+|.|++|||-+
T Consensus 204 ~ndl~~ysF---------~----feg~~Y~Vt~VIQY~~~~-----~HFvtWi~~~dGsWLecDDLk 252 (275)
T PF15499_consen 204 HNDLQHYSF---------H----FEGCLYQVTSVIQYQANL-----NHFVTWIRDSDGSWLECDDLK 252 (275)
T ss_pred ccCCCccce---------e----ecCeeEEEEEEEEEeccC-----ceeEEEEEcCCCCeEeeccCC
Confidence 222222222 1 134679999999997742 899999999999999999965
No 41
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.66 E-value=3.6e-09 Score=77.84 Aligned_cols=37 Identities=59% Similarity=1.358 Sum_probs=33.6
Q ss_pred CCCcCCcccccCccCCCCcccccccccccccccccccc
Q 004724 73 CIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKC 110 (733)
Q Consensus 73 C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C 110 (733)
|..|++.+..+|++|+.++|||++||+.||.. ||..|
T Consensus 1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~~-Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSVYYCSEECQRADWPY-HKFEC 37 (37)
T ss_dssp -TTTSSCSSEEETTTSSSEESSHHHHHHHHHH-HCCTH
T ss_pred CcCCCCCcCCcCCCCCCEEecCHHHHHHHHHH-HhhhC
Confidence 78999988889999999999999999999976 99877
No 42
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.11 E-value=2.6e-07 Score=95.46 Aligned_cols=45 Identities=47% Similarity=1.116 Sum_probs=40.6
Q ss_pred CCCccCCCcCCccc-ccCccCCCCccccccccccccccccccccccc
Q 004724 68 SDDLSCIVCGNPGS-KKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDI 113 (733)
Q Consensus 68 ~~~~~C~~C~~~~~-~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~ 113 (733)
.....|..||.++. +||+.||.|.||+++||+-||.. ||+.|..+
T Consensus 317 ~d~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~-HKK~C~~L 362 (396)
T KOG1710|consen 317 ADCQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFI-HKKVCSFL 362 (396)
T ss_pred EecccccccCCCCccchhhhhHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence 34567999999876 89999999999999999999999 99999877
No 43
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=97.25 E-value=0.00012 Score=81.08 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=50.8
Q ss_pred CCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCC--Ch-HHHHhhccccCC
Q 004724 180 CGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPF--SP-MSILSRLPNIGG 256 (733)
Q Consensus 180 ~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~i--sP-~~ll~~L~~~~~ 256 (733)
.|++-.-|.||+||.|-+++.-....+-++-.........+-......|+.-+-...+..+.+ +| ..+...|.++.
T Consensus 369 kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~d~~nYse~q~~LRseiVnplr~n~fVr~~~~mklR~~ldql~- 447 (724)
T KOG3556|consen 369 KGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPSDSMNYSEMQHSLRSEIVNPLRRNQFVRQNPAMKLRVELDQLN- 447 (724)
T ss_pred ccccCCcchhhccccccccccccccccccccCCCCcccccccHHHHHHHHHhhhchhhhcceeecCHHHHHHHHHHhhh-
Confidence 688888899999999999987655554444333333323332222222322221111111211 11 12222222222
Q ss_pred CCCCC---CcCCHHHHHHHHHHHHh
Q 004724 257 NLGYG---RQEDAHEFMRFAIDTMQ 278 (733)
Q Consensus 257 ~f~~g---~QqDA~EFL~~LLd~L~ 278 (733)
|..| +..|++|||.-++..+-
T Consensus 448 -~~sG~tceekdpEEFLn~l~t~i~ 471 (724)
T KOG3556|consen 448 -FRSGDTCEEKDPEEFLNGLKTLIA 471 (724)
T ss_pred -ccccCcccccCHHHHHHHHHHHhc
Confidence 2222 45699999999988874
No 44
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0021 Score=75.09 Aligned_cols=100 Identities=24% Similarity=0.293 Sum_probs=56.9
Q ss_pred cccCCCccchHHHHHHHhcCHHHHHHHHhcCCCc-----cCC----CCc--hHHHHHHHH---HHHHhccC--CCCCChH
Q 004724 182 LLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRK-----ECG----RDD--WCFLCEFQT---HVEKASQS--SHPFSPM 245 (733)
Q Consensus 182 L~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~-----~~~----~~~--~~~l~~L~~---lf~~l~~s--~~~isP~ 245 (733)
|.|.||+||.||+||+|..+|+|+--+....... ... ... .+-.+.+.. .+...... ....+-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999987765432110 000 001 011111111 11111111 1112223
Q ss_pred HHHhhcccc---CCCCCCCCcCCHHHHHHHHHHHHhhhh
Q 004724 246 SILSRLPNI---GGNLGYGRQEDAHEFMRFAIDTMQSIC 281 (733)
Q Consensus 246 ~ll~~L~~~---~~~f~~g~QqDA~EFL~~LLd~L~e~l 281 (733)
.+...+.+. ...|....|+||++|+.-|+-.+...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 333333322 245788899999999999888886554
No 45
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.86 E-value=0.0022 Score=71.96 Aligned_cols=42 Identities=31% Similarity=0.853 Sum_probs=37.1
Q ss_pred cCCCcCCcccccCccCCCCcccccccccccccccccccccccccc
Q 004724 72 SCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKI 116 (733)
Q Consensus 72 ~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~ 116 (733)
=|.+|..++...| |--..|||.+||+.||+. |+..|+.-+..
T Consensus 529 WC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~~-H~ksCrrk~~~ 570 (588)
T KOG3612|consen 529 WCYNCLDEAIYHC--CWNTSYCSVECQQGHWPE-HRKSCRRKKTN 570 (588)
T ss_pred HHHhhhHHHHHHh--hccccccCcchhhccchh-HhhhhcccCCC
Confidence 4999999999888 888999999999999997 99999866543
No 46
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=94.18 E-value=0.024 Score=61.54 Aligned_cols=45 Identities=38% Similarity=0.811 Sum_probs=41.0
Q ss_pred CccCCCcCCcccccCccCCCCcccccccccccccccccccccccc
Q 004724 70 DLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIG 114 (733)
Q Consensus 70 ~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~ 114 (733)
...|..|+..+...|+.|+.++|||..+|..||..+|+.+|.+..
T Consensus 136 ~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~ 180 (362)
T KOG2061|consen 136 ADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPS 180 (362)
T ss_pred cchhccCcccCcccccccchhhhcCchhhcccccccccccccCcc
Confidence 367999999988999999999999999999999999999997654
No 47
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=94.03 E-value=0.086 Score=49.67 Aligned_cols=38 Identities=34% Similarity=1.003 Sum_probs=30.6
Q ss_pred ccCCCcCCcc-cccCccCCCCcccccccccccccccccc--cccccc
Q 004724 71 LSCIVCGNPG-SKKCSRCKSVRYCSSKCQTSHWQSGHKR--KCKDIG 114 (733)
Q Consensus 71 ~~C~~C~~~~-~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~--~C~~~~ 114 (733)
..|.-|.+.. ..+|..|. |.|||..| |+. ||. .|+...
T Consensus 6 ~tC~ic~e~~~KYKCpkC~-vPYCSl~C----fKi-Hk~tPq~~~ve 46 (157)
T KOG2857|consen 6 TTCVICLESEIKYKCPKCS-VPYCSLPC----FKI-HKSTPQCETVE 46 (157)
T ss_pred eeehhhhcchhhccCCCCC-Cccccchh----hhh-ccCCccccccC
Confidence 4688998877 46999998 89999999 777 887 666544
No 48
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.014 Score=68.73 Aligned_cols=210 Identities=18% Similarity=0.302 Sum_probs=122.9
Q ss_pred CcCCHHHHHHHHHHHHhhhhhhhcCC--------CCCCC-CCCcccccccceeceeEEeEEEeCCCCCccccccc-cccc
Q 004724 262 RQEDAHEFMRFAIDTMQSICLDEFGG--------EKAVP-PRSQETTLIQHIFGGHLQSQVICSKCNNISNQYEN-MMDL 331 (733)
Q Consensus 262 ~QqDA~EFL~~LLd~L~e~l~~~~~~--------~~~~~-~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~-f~~L 331 (733)
...++.++|..++..|++........ +.... ......++++++|+-....+..|..|.......+. -+.+
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~ 627 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGI 627 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhh
Confidence 34477788888888887653211000 00000 11234577888999999999999999876443321 1111
Q ss_pred hhhcc--------CCcccHHHHHHhcccceecCCCCCccc----CCCCccceeEEEEEeecCCceEEEEEeeeecCcccc
Q 004724 332 TVEIH--------GDAASLEECLDQFTAKEWLDGDNMYKC----DGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGK 399 (733)
Q Consensus 332 ~L~I~--------~~~~sLed~L~~~~~~E~L~g~n~y~C----~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~~~K 399 (733)
.+... ....+.++.|+. ...+. +..| .+|++.. .....|.++|+|++|.|.+=. ....|
T Consensus 628 ~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~-----~m~cD~~~gGCgk~n--~v~h~is~~P~vftIvlewEk-~ETe~ 698 (806)
T KOG1887|consen 628 VIAADSLRQLKCAFQNITFEDILKN-IRMND-----KMLCDKETGGCGKAN--LVHHILSPCPPVFTIVLEWEK-SETEK 698 (806)
T ss_pred hccchhhhhHHHHhhhhhHHHHHHH-hhhhh-----hhcccccCCCCcchh--hhhhhcCCCCCeeEeeeehhc-ccchH
Confidence 11111 012445555544 22221 2233 3566432 233457889999999665532 11111
Q ss_pred c--cceEecCCcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEE--EEeCCceeee-chhhhc
Q 004724 400 L--NKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWY--RVDDCKVTSV-DLEEVL 474 (733)
Q Consensus 400 i--~~~V~FP~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~--~fnDs~V~~v-~~e~vl 474 (733)
. .+...+..++|++.....+..+...|+|+++|.-+.. . ++|.|+.+. .++|. +++|..+..+ +|.+|+
T Consensus 699 eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~--~---~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 699 EISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE--G---EEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred HHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc--c---ceEEEeecc-CCcchhhHHHHHHhhhccchHHHH
Confidence 1 1122244567777655455567789999999988742 2 999999996 77888 9999888777 566665
Q ss_pred C------CCcEEEEEEEc
Q 004724 475 S------QGAYMLLYNRV 486 (733)
Q Consensus 475 ~------~~AYiLfY~R~ 486 (733)
. -.+-+|||++.
T Consensus 773 r~c~e~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 773 RFCGERKVRPEILFYEAQ 790 (806)
T ss_pred HHHhcccccHHHHHHHHH
Confidence 2 24667777663
No 49
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=92.08 E-value=2 Score=46.84 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=36.0
Q ss_pred cccCCCccchHHHHHHHhcCHH-HHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCCCCC
Q 004724 182 LLNCGNSCFANVVLQCLTYTRP-LVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGNLGY 260 (733)
Q Consensus 182 L~NlGNTCYlNSvLQ~L~~ip~-fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~f~~ 260 (733)
|.=.-|+||+||++=.|=++.. |+. . .++.++.++... +|..|...+-.. .+...
T Consensus 105 Lkq~dNNCwVna~~~~LQ~~~~~f~~----------------~---~l~~aw~~f~~G----~~~~fVa~~Ya~-~~~~~ 160 (320)
T PF08715_consen 105 LKQSDNNCWVNAACLQLQALKIKFKS----------------P---GLDEAWNEFKAG----DPAPFVAWCYAS-TNAKK 160 (320)
T ss_dssp E---TTTHHHHHHHHHHTTST--BSS----------------H---HHHHHHHHHHTT------HHHHHHHHHH-TT--T
T ss_pred EEecCCCcHHHHHHHHHHhcCCccCC----------------H---HHHHHHHHHhCC----ChHHHHHHHHHH-cCCCC
Confidence 4444699999999766643321 111 0 223333333322 344555444332 34567
Q ss_pred CCcCCHHHHHHHHHHHHh
Q 004724 261 GRQEDAHEFMRFAIDTMQ 278 (733)
Q Consensus 261 g~QqDA~EFL~~LLd~L~ 278 (733)
|+.-||+++|..|++.++
T Consensus 161 G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 161 GDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp TS---HHHHHHHHHTTB-
T ss_pred CCCcCHHHHHHHHHHhcc
Confidence 788999999999998775
No 50
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=91.35 E-value=0.064 Score=37.60 Aligned_cols=27 Identities=52% Similarity=1.235 Sum_probs=20.9
Q ss_pred ccCCCcCCcccccCccCCCCcccccccc
Q 004724 71 LSCIVCGNPGSKKCSRCKSVRYCSSKCQ 98 (733)
Q Consensus 71 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ 98 (733)
..|.+|+..+..+|.+|. .+|||.+|-
T Consensus 3 ~~C~vC~~~~kY~Cp~C~-~~~CSl~C~ 29 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCG-ARYCSLACY 29 (30)
T ss_dssp EEETSSSSEESEE-TTT---EESSHHHH
T ss_pred CCCccCcCCCEEECCCcC-CceeCcEeE
Confidence 469999997778999999 679999884
No 51
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=90.24 E-value=0.12 Score=48.90 Aligned_cols=37 Identities=30% Similarity=0.758 Sum_probs=31.9
Q ss_pred CCCCccCCCcCCcccccCccCCCCcccccccccccccc
Q 004724 67 SSDDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQS 104 (733)
Q Consensus 67 ~~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~ 104 (733)
-+....|++||..+...|..|+ .+|||..|-..|-..
T Consensus 115 KP~r~fCaVCG~~S~ysC~~CG-~kyCsv~C~~~HneT 151 (156)
T KOG3362|consen 115 KPLRKFCAVCGYDSKYSCVNCG-TKYCSVRCLKTHNET 151 (156)
T ss_pred CCcchhhhhcCCCchhHHHhcC-Cceeechhhhhcccc
Confidence 3556789999988889999999 889999999888665
No 52
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=89.13 E-value=0.082 Score=42.24 Aligned_cols=45 Identities=22% Similarity=0.596 Sum_probs=37.6
Q ss_pred cCCCcCC----cccccCccCCCCccccccccccccccccccccccccccC
Q 004724 72 SCIVCGN----PGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKIN 117 (733)
Q Consensus 72 ~C~~C~~----~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~~ 117 (733)
.|.+|+. .....|..|+...|||+++-..|.+. |+..|..+++++
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~-H~~~c~~LRqvN 49 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEE-HRQLCERLRQVN 49 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHH-HHHHHHHHHHhc
Confidence 3778877 55579999999999999998888887 999998887654
No 53
>PLN03158 methionine aminopeptidase; Provisional
Probab=87.68 E-value=0.18 Score=56.68 Aligned_cols=41 Identities=32% Similarity=0.886 Sum_probs=34.1
Q ss_pred CCccCCCcCCcccccCccCCC-------Ccccccccccccccccccccc
Q 004724 69 DDLSCIVCGNPGSKKCSRCKS-------VRYCSSKCQTSHWQSGHKRKC 110 (733)
Q Consensus 69 ~~~~C~~C~~~~~~~Cs~C~~-------~~YCs~~cQ~~~W~~~Hk~~C 110 (733)
....|..|++.+..+|..|.. .++||.+|=+..|+. ||..=
T Consensus 8 ~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~h 55 (396)
T PLN03158 8 SPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWSS-HKSVH 55 (396)
T ss_pred CcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHHH-HHHHH
Confidence 344599999999988888864 679999999999998 87653
No 54
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=87.61 E-value=0.28 Score=48.58 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=32.3
Q ss_pred EEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhcCCCcEEEEEEEcCCCC
Q 004724 429 YAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARP 490 (733)
Q Consensus 429 ~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R~~~~~ 490 (733)
.+-|.-.|. ||.+.+.+. .+.||.+||+.+.+.++... -+|.|..-+..+
T Consensus 130 ~agi~~~g~------~Havfa~~t-s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D~Ep 179 (193)
T PF05408_consen 130 HAGIFLKGQ------EHAVFACVT-SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQEP 179 (193)
T ss_dssp EEEEEEEST------TEEEEEEEE-TTCEEEEETTEEEE----GG-----GEEEEEESSSS-
T ss_pred hhHheecCC------cceEEEEEe-eCcEEEecCCeeeeCCCChh-----heEEEcccCccc
Confidence 344455553 999999996 67799999999998765432 246677665443
No 55
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=75.04 E-value=2 Score=45.90 Aligned_cols=38 Identities=39% Similarity=0.974 Sum_probs=29.0
Q ss_pred CCccCCCcCCccc-ccCccCCCCcccccccccccccccccccccc
Q 004724 69 DDLSCIVCGNPGS-KKCSRCKSVRYCSSKCQTSHWQSGHKRKCKD 112 (733)
Q Consensus 69 ~~~~C~~C~~~~~-~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~ 112 (733)
.-..|..|+.... ..|.+|. ..|||-.|- +. |+..|..
T Consensus 6 ~~~~C~ic~vq~~~YtCPRCn-~~YCsl~CY----r~-h~~~CsE 44 (383)
T KOG4317|consen 6 SFLACGICGVQKREYTCPRCN-LLYCSLKCY----RN-HKHSCSE 44 (383)
T ss_pred ceeeccccccccccccCCCCC-ccceeeeee----cC-CCccchH
Confidence 4456999998765 7999999 779999995 44 6665643
No 56
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=60.35 E-value=19 Score=36.06 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=15.8
Q ss_pred CCcccCCCccchHHHHHHHhcC
Q 004724 180 CGLLNCGNSCFANVVLQCLTYT 201 (733)
Q Consensus 180 ~GL~NlGNTCYlNSvLQ~L~~i 201 (733)
.|+.|.+|+||+||++|.+..+
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp E----SSSTHHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHHc
Confidence 5999999999999999998543
No 57
>PRK01343 zinc-binding protein; Provisional
Probab=59.49 E-value=7.8 Score=31.41 Aligned_cols=28 Identities=25% Similarity=0.824 Sum_probs=22.2
Q ss_pred CCccCCCcCCcccccCccCCCCccccccccccc
Q 004724 69 DDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSH 101 (733)
Q Consensus 69 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~ 101 (733)
....|..|+++... ....|||+.|+..|
T Consensus 8 p~~~CP~C~k~~~~-----~~rPFCS~RC~~iD 35 (57)
T PRK01343 8 PTRPCPECGKPSTR-----EAYPFCSERCRDID 35 (57)
T ss_pred CCCcCCCCCCcCcC-----CCCcccCHHHhhhh
Confidence 45679999998653 35689999999877
No 58
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=55.19 E-value=6.9 Score=43.31 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=32.9
Q ss_pred CCCCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhc
Q 004724 174 KPGFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEK 211 (733)
Q Consensus 174 ~~~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~ 211 (733)
...+.|+|+.|.||-|++|+..|.+.+..++...+-..
T Consensus 173 n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~ 210 (420)
T KOG1871|consen 173 NDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKI 210 (420)
T ss_pred cccccccccccccccccccchhhcccccCchhhhcCCc
Confidence 34578999999999999999999999999998877443
No 59
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.75 E-value=6.2 Score=29.84 Aligned_cols=31 Identities=45% Similarity=1.004 Sum_probs=22.5
Q ss_pred CCccCCCcCCccc--ccCccCC-CCccccccccc
Q 004724 69 DDLSCIVCGNPGS--KKCSRCK-SVRYCSSKCQT 99 (733)
Q Consensus 69 ~~~~C~~C~~~~~--~~Cs~C~-~~~YCs~~cQ~ 99 (733)
+.-.|.+||.+-+ ++-.+|- .|+|||..|..
T Consensus 7 p~K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 7 PSKICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CCCcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 3457999998876 4444553 68999999964
No 60
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=45.94 E-value=17 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=27.8
Q ss_pred CCcccCCCCccceeEEEEEee--cCCceEEEEEeeee
Q 004724 359 NMYKCDGCNDYVKAWKRLTVR--RAPNILTIALKRFQ 393 (733)
Q Consensus 359 n~y~C~~C~~~~~a~K~~~I~--~lP~vLiI~LkRF~ 393 (733)
+++.|++|+...-..+..... .+.+++-||.++|-
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 357799999877666766554 78899999999984
No 61
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.50 E-value=3.4 Score=32.00 Aligned_cols=31 Identities=48% Similarity=0.952 Sum_probs=23.8
Q ss_pred CCCccCCCcCCccc--ccCccCC-CCcccccccc
Q 004724 68 SDDLSCIVCGNPGS--KKCSRCK-SVRYCSSKCQ 98 (733)
Q Consensus 68 ~~~~~C~~C~~~~~--~~Cs~C~-~~~YCs~~cQ 98 (733)
.+...|.+|+.+-. ++-.+|- .|+|||..|.
T Consensus 10 lp~KICpvCqRPFsWRkKW~~cWDeVKyCSeRCr 43 (54)
T COG4338 10 LPDKICPVCQRPFSWRKKWARCWDEVKYCSERCR 43 (54)
T ss_pred cchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 35567999999877 4566664 6889999986
No 62
>KOG2858 consensus Uncharacterized conserved protein [General function prediction only]
Probab=35.86 E-value=16 Score=39.97 Aligned_cols=36 Identities=33% Similarity=0.660 Sum_probs=28.6
Q ss_pred CCCCccCCCcCCccc-ccCccCCCCccccccccccccc
Q 004724 67 SSDDLSCIVCGNPGS-KKCSRCKSVRYCSSKCQTSHWQ 103 (733)
Q Consensus 67 ~~~~~~C~~C~~~~~-~~Cs~C~~~~YCs~~cQ~~~W~ 103 (733)
.-....|.+|++... .+|.+|- ++-|+-+|-..|=.
T Consensus 14 ~~~~vlCgVClknE~KYkCPRCl-~rtCsLeCskkHK~ 50 (390)
T KOG2858|consen 14 GLHSVLCGVCLKNEPKYKCPRCL-ARTCSLECSKKHKI 50 (390)
T ss_pred ccchhhhhhcccCcccccCcchh-hhheeccccccccc
Confidence 345678999999877 5999998 77899999865543
No 63
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=33.26 E-value=51 Score=32.36 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=25.2
Q ss_pred EEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceee
Q 004724 428 LYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTS 467 (733)
Q Consensus 428 L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~ 467 (733)
..|+|++.+ .|++|..|- +|+||.+|=..-.+
T Consensus 99 ~~gfI~N~~-------~HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICNLS-------RHWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEECT-------TEEEEEEEE-TTEEEEECTTTSS-
T ss_pred ceEEEeccC-------cceEEEEee-CCeeEeccCCCCCC
Confidence 468889844 999999885 99999999765444
No 64
>PF14353 CpXC: CpXC protein
Probab=32.53 E-value=36 Score=31.85 Aligned_cols=48 Identities=15% Similarity=0.367 Sum_probs=25.6
Q ss_pred EEeCCCCCccccccccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccce
Q 004724 313 VICSKCNNISNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVK 371 (733)
Q Consensus 313 i~C~~C~~~s~~~E~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~ 371 (733)
++|..|++.... +-+..|.... ...|.+.|. ..+. +.+.|+.||....
T Consensus 2 itCP~C~~~~~~-~v~~~I~~~~---~p~l~e~il---~g~l----~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEF-EVWTSINADE---DPELKEKIL---DGSL----FSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEE-EEEeEEcCcC---CHHHHHHHH---cCCc----CEEECCCCCCcee
Confidence 689999986432 2222222221 234444442 2222 2499999998654
No 65
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=28.97 E-value=24 Score=42.03 Aligned_cols=40 Identities=30% Similarity=0.712 Sum_probs=28.0
Q ss_pred CccCCCc----CCcccccCccCC---C----Ccccccccccccccccccccc
Q 004724 70 DLSCIVC----GNPGSKKCSRCK---S----VRYCSSKCQTSHWQSGHKRKC 110 (733)
Q Consensus 70 ~~~C~~C----~~~~~~~Cs~C~---~----~~YCs~~cQ~~~W~~~Hk~~C 110 (733)
...|.+| ++++...|..|. . ..+|+.+|=+..|+. ||..=
T Consensus 59 ~~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~h 109 (606)
T PLN03144 59 DRKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRH-HRVLH 109 (606)
T ss_pred CccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHH-HHHHH
Confidence 3445666 444455666664 2 568999999999998 88653
No 66
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=24.31 E-value=21 Score=29.22 Aligned_cols=30 Identities=30% Similarity=0.699 Sum_probs=21.8
Q ss_pred CCccCCCcCCcccccCccCCCCcccccccccccccc
Q 004724 69 DDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQS 104 (733)
Q Consensus 69 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~ 104 (733)
+|.-|-+||++-.. .-.|||.+|+..-++.
T Consensus 2 ~HkHC~~CG~~Ip~------~~~fCS~~C~~~~~k~ 31 (59)
T PF09889_consen 2 PHKHCPVCGKPIPP------DESFCSPKCREEYRKR 31 (59)
T ss_pred CCCcCCcCCCcCCc------chhhhCHHHHHHHHHH
Confidence 45679999987653 2568999998776665
No 67
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=23.28 E-value=25 Score=26.90 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=21.8
Q ss_pred ccCCCcCCcccccCccCCCCcccccccccccccc
Q 004724 71 LSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQS 104 (733)
Q Consensus 71 ~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~ 104 (733)
..|..|++.-.. .--..-|||.+|...|+..
T Consensus 7 ~yC~~Cdk~~~~---~~~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 7 DYCIVCDKQIDP---PDDGSLYCSEECRLKDQEK 37 (43)
T ss_pred hHHHHhhccccC---CCCCccccCHHHHhHhhhc
Confidence 357777765422 3345669999999999876
No 68
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=22.24 E-value=63 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=20.0
Q ss_pred cccCCCCccceeEEEEEee--cCCceEEEEEeeee
Q 004724 361 YKCDGCNDYVKAWKRLTVR--RAPNILTIALKRFQ 393 (733)
Q Consensus 361 y~C~~C~~~~~a~K~~~I~--~lP~vLiI~LkRF~ 393 (733)
|.|++|+...-..+++... .+-.++-|+.++|.
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~ 35 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFT 35 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEE
Confidence 7899999865544444332 23445666666664
No 69
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=22.15 E-value=22 Score=37.17 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=37.4
Q ss_pred EEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeee--chhhh------cCCCcEEEEEEEcCCCCC
Q 004724 429 YAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSV--DLEEV------LSQGAYMLLYNRVSARPS 491 (733)
Q Consensus 429 ~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v--~~e~v------l~~~AYiLfY~R~~~~~~ 491 (733)
.|+|||+- -||++..| .+++||.+|--.--+- +..-+ +++.+|-+|-++-+....
T Consensus 104 rafICnl~-------eHWF~iRK-fg~qWfnlnSllagPellSdtyls~FL~qlq~egySIFVVkG~lP~~ 166 (315)
T KOG2935|consen 104 RAFICNLK-------EHWFTIRK-FGKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYSIFVVKGDLPDC 166 (315)
T ss_pred hhhhhcch-------hhhhhHhh-hcchhccchhhhcchHHHHHHHHHHHHHHHHhCCeeEEEEecCCCCc
Confidence 46788876 89999877 6999999986433221 11111 357899999988765543
No 70
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=21.41 E-value=34 Score=37.75 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=18.6
Q ss_pred CCCCCccCCCcCCccc------ccCccCCC
Q 004724 66 GSSDDLSCIVCGNPGS------KKCSRCKS 89 (733)
Q Consensus 66 ~~~~~~~C~~C~~~~~------~~Cs~C~~ 89 (733)
.+.....|+.||-.++ ..|-+||-
T Consensus 15 ~s~~~~~CaICGDkaTGKHYGA~SCdGCKG 44 (432)
T KOG4215|consen 15 SSGVAEFCAICGDKATGKHYGAISCDGCKG 44 (432)
T ss_pred cccccchhheeCCcccccccceeecCcchH
Confidence 3456678999998766 48999994
No 71
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=21.27 E-value=1e+02 Score=29.42 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=26.6
Q ss_pred ceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCC
Q 004724 424 DVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDC 463 (733)
Q Consensus 424 ~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs 463 (733)
..++|.|||-. + ++|++++.+.+++|++.-..
T Consensus 34 s~WrlqGiVg~-----~---~~~~gwl~~p~g~W~Rv~~g 65 (132)
T PF10748_consen 34 SQWRLQGIVGQ-----G---DRWIGWLQDPQGKWLRVRQG 65 (132)
T ss_pred ccceEccEECC-----C---CcEEEEEECCCCCeEEeccC
Confidence 47999999865 2 89999999999999987544
No 72
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=21.05 E-value=41 Score=23.66 Aligned_cols=23 Identities=30% Similarity=0.849 Sum_probs=12.2
Q ss_pred CccCCCcCCccc-------ccCccCCCCcc
Q 004724 70 DLSCIVCGNPGS-------KKCSRCKSVRY 92 (733)
Q Consensus 70 ~~~C~~C~~~~~-------~~Cs~C~~~~Y 92 (733)
+..|..||.+.. ++|..|+...|
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~~y 32 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHEHY 32 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-EE-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCEeC
Confidence 456888887654 57877776544
Done!