Query 004724
Match_columns 733
No_of_seqs 468 out of 2535
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 2.4E-61 8.1E-66 528.6 30.2 311 178-491 7-363 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 9.9E-60 3.4E-64 509.2 28.9 308 178-489 8-345 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 9.4E-60 3.2E-64 522.1 25.4 308 177-487 60-396 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.5E-59 5.2E-64 509.1 22.6 307 179-490 3-354 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 5.4E-58 1.8E-62 500.3 26.7 293 178-490 5-318 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 3.2E-58 1.1E-62 509.2 22.8 306 176-489 11-396 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 1.9E-57 6.5E-62 514.6 21.9 304 179-487 141-474 (476)
8 1vjv_A Ubiquitin carboxyl-term 100.0 5.8E-57 2E-61 501.9 23.8 288 176-487 21-414 (415)
9 2f1z_A Ubiquitin carboxyl-term 100.0 1.6E-55 5.4E-60 504.8 25.2 296 178-493 174-490 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 5.4E-52 1.8E-56 497.6 24.1 223 178-417 343-623 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 2.1E-30 7.2E-35 277.5 6.2 223 178-462 8-308 (374)
12 2d8q_A BLU protein, zinc finge 98.8 1.1E-09 3.8E-14 91.0 3.2 46 69-115 14-59 (70)
13 2dj8_A Protein CBFA2T1; zinc f 98.8 1.3E-09 4.5E-14 87.9 2.1 46 68-114 13-58 (60)
14 2od1_A Protein CBFA2T1; zinc f 98.7 1.5E-09 5E-14 87.6 1.1 45 69-114 12-56 (60)
15 2odd_A Protein CBFA2T1; MYND z 98.7 2.5E-09 8.5E-14 87.4 1.2 45 69-114 16-60 (64)
16 2jw6_A Deformed epidermal auto 98.7 3.4E-09 1.1E-13 82.8 1.7 43 69-112 8-50 (52)
17 3qww_A SET and MYND domain-con 97.7 5.6E-06 1.9E-10 92.2 -0.4 48 68-116 47-96 (433)
18 3qwp_A SET and MYND domain-con 97.6 6.5E-06 2.2E-10 91.6 -0.9 48 68-116 45-94 (429)
19 3n71_A Histone lysine methyltr 97.4 1.4E-05 4.6E-10 90.6 -1.1 48 68-116 47-96 (490)
20 3mp2_A Non-structural protein 95.5 0.083 2.8E-06 52.5 11.1 34 430-469 162-195 (211)
21 2fe8_A PP1AB, ORF1AB, replicas 94.1 0.84 2.9E-05 48.1 15.0 36 430-470 261-296 (315)
22 2yqq_A Zinc finger HIT domain- 93.7 0.029 9.8E-07 44.0 2.2 38 70-113 12-49 (56)
23 1x4s_A Protein FON, zinc finge 93.2 0.022 7.4E-07 45.0 0.7 36 69-111 10-49 (59)
24 1qmy_A Protease, leader protea 72.9 0.98 3.4E-05 41.7 0.9 37 428-471 109-145 (167)
25 1lv3_A Hypothetical protein YA 34.0 9.5 0.00032 30.9 0.3 35 69-104 8-45 (68)
26 3a43_A HYPD, hydrogenase nicke 27.3 87 0.003 28.6 5.7 19 308-326 66-84 (139)
27 3o65_A Putative ataxin-3-like 20.7 1.6E+02 0.0053 28.6 6.2 52 428-487 110-169 (191)
28 1zso_A Hypothetical protein; s 20.3 1.9E+02 0.0065 27.3 6.6 29 444-473 131-159 (164)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-61 Score=528.56 Aligned_cols=311 Identities=26% Similarity=0.487 Sum_probs=265.7
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCC-----CCchHHHHHHHHHHHHhccC-CCCCChHHHHhhc
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECG-----RDDWCFLCEFQTHVEKASQS-SHPFSPMSILSRL 251 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~-----~~~~~~l~~L~~lf~~l~~s-~~~isP~~ll~~L 251 (733)
+++||.|+||||||||+||+|+++|+|+++|+...+..... .....++.+|+.+|..|+.+ ...++|..|+..+
T Consensus 7 g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~~l 86 (367)
T 2y6e_A 7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQV 86 (367)
T ss_dssp TCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHHHH
T ss_pred CCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence 34999999999999999999999999999999765433221 12346889999999999865 4678999999999
Q ss_pred cccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCC-C-CCC----------------CcccccccceeceeEEeEE
Q 004724 252 PNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKA-V-PPR----------------SQETTLIQHIFGGHLQSQV 313 (733)
Q Consensus 252 ~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~-~-~~~----------------~~~~siI~~lF~G~l~s~i 313 (733)
+...+.|..++||||||||.+||+.||+++......... . ... ....++|.++|+|++++++
T Consensus 87 ~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s~~ 166 (367)
T 2y6e_A 87 GRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTL 166 (367)
T ss_dssp HHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEE
T ss_pred HHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEeeeE
Confidence 999999999999999999999999999886432111000 0 000 0135789999999999999
Q ss_pred EeCCCCCccccccccccchhhccCC------------------cccHHHHHHhcccceecCCCCCcccCCCCccceeEEE
Q 004724 314 ICSKCNNISNQYENMMDLTVEIHGD------------------AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKR 375 (733)
Q Consensus 314 ~C~~C~~~s~~~E~f~~L~L~I~~~------------------~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~ 375 (733)
+|..|++++.++|+|++|+|+|+.. ..+|++||+.|+.+|.|+++++|.|++|++++.+.|+
T Consensus 167 ~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~ 246 (367)
T 2y6e_A 167 VCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKK 246 (367)
T ss_dssp ECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEE
T ss_pred EeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEE
Confidence 9999999999999999999999742 3689999999999999999999999999999999999
Q ss_pred EEeecCCceEEEEEeeeecCc--cccccceEecCC-cCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc
Q 004724 376 LTVRRAPNILTIALKRFQSGR--FGKLNKRVTFPE-TLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD 452 (733)
Q Consensus 376 ~~I~~lP~vLiI~LkRF~~~~--~~Ki~~~V~FP~-~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~ 452 (733)
..|++||+||+||||||.++. ..|+++.|.||. .|||.+|+.........|+|+|||+|.|...+ |||+||+|.
T Consensus 247 ~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~---GHY~a~~~~ 323 (367)
T 2y6e_A 247 FDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGV---GHYTAYAKN 323 (367)
T ss_dssp EEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSS---CEEEEEEEC
T ss_pred EEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCC---CeeeEEEEc
Confidence 999999999999999998764 379999999996 79999999877667789999999999997544 999999998
Q ss_pred C-CCCEEEEeCCceeeechhhhcCCCcEEEEEEEcCCCCC
Q 004724 453 F-RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPS 491 (733)
Q Consensus 453 ~-~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R~~~~~~ 491 (733)
. +++||+|||+.|+++++++|++..||||||+|++..++
T Consensus 324 ~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~ 363 (367)
T 2y6e_A 324 KLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFY 363 (367)
T ss_dssp TTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC---
T ss_pred CCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCC
Confidence 5 78999999999999999999999999999999976543
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=9.9e-60 Score=509.20 Aligned_cols=308 Identities=31% Similarity=0.538 Sum_probs=265.7
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccC---CCCchHHHHHHHHHHHHhc--cCCCCCChHHHHhhcc
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKEC---GRDDWCFLCEFQTHVEKAS--QSSHPFSPMSILSRLP 252 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~---~~~~~~~l~~L~~lf~~l~--~s~~~isP~~ll~~L~ 252 (733)
+.+||.|+||||||||+||+|+++|+|++++++..+.... .....+++++|+.+|..++ .....++|..|+..+.
T Consensus 8 g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~~l~ 87 (348)
T 3nhe_A 8 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQ 87 (348)
T ss_dssp SCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHHHHH
T ss_pred CCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHH
Confidence 4599999999999999999999999999999875433322 2345689999999999997 3467889999999999
Q ss_pred ccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCC------------------CcccccccceeceeEEeEEE
Q 004724 253 NIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPR------------------SQETTLIQHIFGGHLQSQVI 314 (733)
Q Consensus 253 ~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~------------------~~~~siI~~lF~G~l~s~i~ 314 (733)
...+.|..++||||||||.+||+.|++++............. ....++|.++|+|++++.++
T Consensus 88 ~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~ 167 (348)
T 3nhe_A 88 RYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLT 167 (348)
T ss_dssp HHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEEEE
T ss_pred HhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEEEE
Confidence 999999999999999999999999999875422111111100 23457899999999999999
Q ss_pred eCCCCCccccccccccchhhccCC---cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEee
Q 004724 315 CSKCNNISNQYENMMDLTVEIHGD---AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKR 391 (733)
Q Consensus 315 C~~C~~~s~~~E~f~~L~L~I~~~---~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkR 391 (733)
|..|++.+.+.++|++|+|+|+.. ..+|+++|+.|+.+|.++++++|.|++|+.++.+.|+..|.++|+||+|||+|
T Consensus 168 C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkR 247 (348)
T 3nhe_A 168 CTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKR 247 (348)
T ss_dssp ETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECC
T ss_pred cCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEc
Confidence 999999999999999999999753 25999999999999999999999999999999999999999999999999999
Q ss_pred eecC--ccccccceEecC-CcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceee
Q 004724 392 FQSG--RFGKLNKRVTFP-ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTS 467 (733)
Q Consensus 392 F~~~--~~~Ki~~~V~FP-~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~ 467 (733)
|.++ ...|+++.|.|| ..|||.+|+.... ....|+|+|||+|.|+..+ |||+||+|. .+++||+|||+.|++
T Consensus 248 f~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~-~~~~Y~L~avv~H~G~~~~---GHY~~~~~~~~~~~W~~~nD~~V~~ 323 (348)
T 3nhe_A 248 FSESRIRTSKLTTFVNFPLRDLDLREFASENT-NHAVYNLYAVSNHSGTTMG---GHYTAYCRSPGTGEWHTFNDSSVTP 323 (348)
T ss_dssp BCCCSSCCCBCCCCEECCSSCEECGGGBCTTC-CCCEEEEEEEEEEEECSSC---EEEEEEEECTTTCCEEEEETTEEEE
T ss_pred ccccCCceeecCcceeccCCcCCHhhhcCCCC-CCCcEEEEEEEEccCCCCC---cccEEEEccCCCCcEEEEeCCCceE
Confidence 9864 357999999999 6899999997643 4568999999999997544 999999998 478999999999999
Q ss_pred echhhhcCCCcEEEEEEEcCCC
Q 004724 468 VDLEEVLSQGAYMLLYNRVSAR 489 (733)
Q Consensus 468 v~~e~vl~~~AYiLfY~R~~~~ 489 (733)
+++++|.+.+||||||+|++..
T Consensus 324 v~~~~v~~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 324 MSSSQVRTSDAYLLFYELASPP 345 (348)
T ss_dssp ECGGGTCCTTEEEEEEEECC--
T ss_pred CCHHHcCCCCceEEEEEecCCC
Confidence 9999999999999999998643
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=9.4e-60 Score=522.10 Aligned_cols=308 Identities=27% Similarity=0.487 Sum_probs=263.0
Q ss_pred CCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccC-----CCCchHHHHHHHHHHHHhccC-CCCCChHHHHhh
Q 004724 177 FAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKEC-----GRDDWCFLCEFQTHVEKASQS-SHPFSPMSILSR 250 (733)
Q Consensus 177 ~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~-----~~~~~~~l~~L~~lf~~l~~s-~~~isP~~ll~~ 250 (733)
.+++||.|+||||||||+||+|+++|+|+++|+...+.... ......+..+|..++..|+.+ ...++|..|+..
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHHH
Confidence 34599999999999999999999999999999875432211 112345788899999888754 457899999999
Q ss_pred ccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCC----CC--------------CCcccccccceeceeEEeE
Q 004724 251 LPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAV----PP--------------RSQETTLIQHIFGGHLQSQ 312 (733)
Q Consensus 251 L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~----~~--------------~~~~~siI~~lF~G~l~s~ 312 (733)
++...+.|..++||||||||.+|||.|++++.......... .. .....++|.++|+|++++.
T Consensus 140 l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~s~ 219 (396)
T 2gfo_A 140 IGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKST 219 (396)
T ss_dssp HHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEE
T ss_pred HHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEEEE
Confidence 99999999999999999999999999999875321110000 00 0123578999999999999
Q ss_pred EEeCCCCCccccccccccchhhccCC-cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEee
Q 004724 313 VICSKCNNISNQYENMMDLTVEIHGD-AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKR 391 (733)
Q Consensus 313 i~C~~C~~~s~~~E~f~~L~L~I~~~-~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkR 391 (733)
++|..|++.+.++|+|++|+|+|+.. ..+|++||+.|+.+|.|+++|+|.|++|+.++.+.|+..|++||+||+|||||
T Consensus 220 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkR 299 (396)
T 2gfo_A 220 VQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKR 299 (396)
T ss_dssp EEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECC
T ss_pred EEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecc
Confidence 99999999999999999999999853 46999999999999999999999999999999999999999999999999999
Q ss_pred eecCc--cccccceEecC-CcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC-CCCEEEEeCCceee
Q 004724 392 FQSGR--FGKLNKRVTFP-ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF-RGHWYRVDDCKVTS 467 (733)
Q Consensus 392 F~~~~--~~Ki~~~V~FP-~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~-~g~W~~fnDs~V~~ 467 (733)
|.++. ..|+++.|.|| +.|||.+|+.........|+|+|||+|.|+..+ |||+||+|+. +++||+|||+.|++
T Consensus 300 F~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~---GHY~a~v~~~~~~~W~~fnD~~V~~ 376 (396)
T 2gfo_A 300 FSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDG---GHYTAYCKNAARQRWFKFDDHEVSD 376 (396)
T ss_dssp EEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTT---CEEEEEEEETTTTEEEEEETTEEEE
T ss_pred eeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecCCCCC---CceEEEEcCCCCCCEEEEeCCCeEE
Confidence 98754 36999999999 579999999876666788999999999996544 9999999984 68999999999999
Q ss_pred echhhhcCCCcEEEEEEEcC
Q 004724 468 VDLEEVLSQGAYMLLYNRVS 487 (733)
Q Consensus 468 v~~e~vl~~~AYiLfY~R~~ 487 (733)
+++++|++..||||||+|++
T Consensus 377 v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 377 ISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp CCHHHHSCTTEEEEEEECC-
T ss_pred CCHHHcCCCCceEEEEEEcC
Confidence 99999999999999999874
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.5e-59 Score=509.11 Aligned_cols=307 Identities=29% Similarity=0.502 Sum_probs=256.6
Q ss_pred CCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCC--CCchHHHHHHHHHHHHhccCC--CCCChHHHHhhcccc
Q 004724 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECG--RDDWCFLCEFQTHVEKASQSS--HPFSPMSILSRLPNI 254 (733)
Q Consensus 179 p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~--~~~~~~l~~L~~lf~~l~~s~--~~isP~~ll~~L~~~ 254 (733)
.+||.|+||||||||+||+|+++|+|+++++......... ....+++.+|+.+|..|+... ..++|..|+.+++..
T Consensus 3 ~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~~ 82 (355)
T 3i3t_A 3 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKY 82 (355)
T ss_dssp CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHHH
T ss_pred CcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Confidence 3999999999999999999999999999998754332211 123468999999999998653 679999999999999
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCC---------------------------------Ccccccc
Q 004724 255 GGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPR---------------------------------SQETTLI 301 (733)
Q Consensus 255 ~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~---------------------------------~~~~siI 301 (733)
.+.|..++||||||||.+||+.||+++............. ....++|
T Consensus 83 ~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i 162 (355)
T 3i3t_A 83 VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKI 162 (355)
T ss_dssp CGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCSHH
T ss_pred ChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCCcc
Confidence 9999999999999999999999999875322111000000 1134679
Q ss_pred cceeceeEEeEEEeCCCCCccccccccccchhhccCC-----cccHHHHHHhcccceecCCCCCcccCCCCccceeEEEE
Q 004724 302 QHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHGD-----AASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRL 376 (733)
Q Consensus 302 ~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~~-----~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~ 376 (733)
.++|+|++.+.++|..|++.+.+.++|++|+|+|+.. ..+|+++|+.|+.+|.++++|+|.|++|++++.+.|+.
T Consensus 163 ~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~ 242 (355)
T 3i3t_A 163 VDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKL 242 (355)
T ss_dssp HHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEE
T ss_pred cccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEE
Confidence 9999999999999999999999999999999999742 35999999999999999999999999999999999999
Q ss_pred EeecCCceEEEEEeeeecC--ccccccceEecC-CcCCCCCCcCCCCCCcceeEEEEEEEEecCCCCCCCCeEEEEEEcC
Q 004724 377 TVRRAPNILTIALKRFQSG--RFGKLNKRVTFP-ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF 453 (733)
Q Consensus 377 ~I~~lP~vLiI~LkRF~~~--~~~Ki~~~V~FP-~~LdL~~~~~~~~~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~ 453 (733)
.|.++|+||+|||+||.++ ...|++..|.|| +.|||.+|+... .+...|+|+|||+|.|+..+ |||+||+|.
T Consensus 243 ~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~-~~~~~Y~L~avv~H~G~~~~---GHY~~~~~~- 317 (355)
T 3i3t_A 243 TVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDK-AGSPVYQLYALCNHSGSVHY---GHYTALCRC- 317 (355)
T ss_dssp EEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEETTE---EEEEEEEEE-
T ss_pred EcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCC-CCCcceEEEEEEEecCCCCC---CeEEEEEEc-
Confidence 9999999999999999864 347999999999 569999998654 35678999999999997544 999999997
Q ss_pred CCCEEEEeCCceeeechhhhcCCCcEEEEEEEcCCCC
Q 004724 454 RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARP 490 (733)
Q Consensus 454 ~g~W~~fnDs~V~~v~~e~vl~~~AYiLfY~R~~~~~ 490 (733)
.++||+|||+.|+++++++|++..||||||+|++..+
T Consensus 318 ~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 318 QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC----
T ss_pred CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCCC
Confidence 6779999999999999999999999999999997543
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=5.4e-58 Score=500.34 Aligned_cols=293 Identities=27% Similarity=0.397 Sum_probs=254.4
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCC
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGN 257 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~ 257 (733)
+++||.|+||||||||+||+|+++|+|+++++...... .....++.++|+.+|..|+.+..++.|..|+..+.. +.
T Consensus 5 g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~--~~ 80 (353)
T 1nb8_A 5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGW--ET 80 (353)
T ss_dssp SCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT--SCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTC--CB
T ss_pred CCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC--CcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCC--CC
Confidence 45999999999999999999999999999998654322 122346889999999999988888999999887753 56
Q ss_pred CCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccC
Q 004724 258 LGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHG 337 (733)
Q Consensus 258 f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~ 337 (733)
|..++||||||||.+||+.|++++.. ....++|.++|+|++.+.++|..|++.+.+.++|++|+|+|++
T Consensus 81 ~~~~~QqDA~EFl~~LLd~L~~~~~~-----------~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~ 149 (353)
T 1nb8_A 81 LDSFMQHDVQELCRVLLDNVENKMKG-----------TCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG 149 (353)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHHTTT-----------STTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTT
T ss_pred CCcccchhHHHHHHHHHHHHHHHhcC-----------CCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECC
Confidence 88899999999999999999987532 1235689999999999999999999999999999999999985
Q ss_pred CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc----cccccceEecCCcCCCC
Q 004724 338 DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR----FGKLNKRVTFPETLDLS 413 (733)
Q Consensus 338 ~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~----~~Ki~~~V~FP~~LdL~ 413 (733)
..+|+++|..|+.+|.++++++|.|+.|+ .+.+.|+..|++||+||+|||+||.++. ..|+++.|.||..|||.
T Consensus 150 -~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~ 227 (353)
T 1nb8_A 150 -KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD 227 (353)
T ss_dssp -CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECG
T ss_pred -CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehh
Confidence 57999999999999999999999999996 5789999999999999999999998643 47999999999999999
Q ss_pred CCcCCCC-CCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechhhhcC---------------C
Q 004724 414 PYMSDGG-DRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLEEVLS---------------Q 476 (733)
Q Consensus 414 ~~~~~~~-~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e~vl~---------------~ 476 (733)
+|+.... .....|+|+|||+|.|...+ |||+||+|+ .+++||+|||+.|+++++++|+. .
T Consensus 228 ~~~~~~~~~~~~~Y~L~avv~H~G~~~~---GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~ 304 (353)
T 1nb8_A 228 EFLQKTDPKDPANYILHAVLVHSGDNHG---GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCT 304 (353)
T ss_dssp GGBSSCCTTSCCEEEEEEEEEEESSTTC---CCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCE
T ss_pred hhhcccCCCCCceEEEEEEEEEeCCCCC---cEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCC
Confidence 9997643 34578999999999998544 999999996 67899999999999999998873 5
Q ss_pred CcEEEEEEEcCCCC
Q 004724 477 GAYMLLYNRVSARP 490 (733)
Q Consensus 477 ~AYiLfY~R~~~~~ 490 (733)
+||||||+|++..+
T Consensus 305 ~aYiLfY~r~~~~~ 318 (353)
T 1nb8_A 305 NAYMLVYIRESKLS 318 (353)
T ss_dssp EEEEEEEEETTTHH
T ss_pred eEEEEEEEECchhh
Confidence 79999999987644
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=3.2e-58 Score=509.22 Aligned_cols=306 Identities=24% Similarity=0.323 Sum_probs=254.8
Q ss_pred CCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCc--cC-CCCchHHHHHHHHHHHHhccCCCCCChHHHHhhcc
Q 004724 176 GFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRK--EC-GRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLP 252 (733)
Q Consensus 176 ~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~--~~-~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~ 252 (733)
...|+||.|+||||||||+||+|+++|+|+++|+...... .. .....+++++|+.+|..|+.+...++|..|+..|+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~ 90 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 90 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHH
Confidence 3467999999999999999999999999999999865541 11 12356899999999999988778999999999999
Q ss_pred ccCCCCC------CCCcCCHHHHHHHHHHHHhhhhhhhcCCCCC--------CCCCCcccccccceeceeEEeEEEeCCC
Q 004724 253 NIGGNLG------YGRQEDAHEFMRFAIDTMQSICLDEFGGEKA--------VPPRSQETTLIQHIFGGHLQSQVICSKC 318 (733)
Q Consensus 253 ~~~~~f~------~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~--------~~~~~~~~siI~~lF~G~l~s~i~C~~C 318 (733)
...+.|. .++||||||||.+||+.|++++......... ........++|.++|+|++++.++|..|
T Consensus 91 ~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C 170 (404)
T 2ayn_A 91 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 170 (404)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCC
Confidence 8887776 4899999999999999999886432110000 0001234578999999999999999999
Q ss_pred CCcc--ccccccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC-
Q 004724 319 NNIS--NQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG- 395 (733)
Q Consensus 319 ~~~s--~~~E~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~- 395 (733)
++.+ .+.|+|++|+|+|++...+|+++|+.|+. |.++ +.|++|++...+.|+..|.+||+||+|||+||.++
T Consensus 171 ~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~ 245 (404)
T 2ayn_A 171 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKE 245 (404)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCC
T ss_pred CCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEec
Confidence 9995 79999999999998766799999999986 4454 89999999999999999999999999999999865
Q ss_pred ---ccccccceEecCCcCCCCCCcCCC-------------------------------------------------CCCc
Q 004724 396 ---RFGKLNKRVTFPETLDLSPYMSDG-------------------------------------------------GDRT 423 (733)
Q Consensus 396 ---~~~Ki~~~V~FP~~LdL~~~~~~~-------------------------------------------------~~~~ 423 (733)
...|++++|.||..|||.+|+..+ ....
T Consensus 246 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 325 (404)
T 2ayn_A 246 KESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNC 325 (404)
T ss_dssp SSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCC
T ss_pred ccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCC
Confidence 347999999999999999998531 1234
Q ss_pred ceeEEEEEEEEecC-CCCCCCCeEEEEEEcCCCCEEEEeCCceeeechhhhcCCC-------cEEEEEEEcCCC
Q 004724 424 DVYKLYAVVVHVDM-LNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQG-------AYMLLYNRVSAR 489 (733)
Q Consensus 424 ~~Y~L~aVV~H~G~-~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e~vl~~~-------AYiLfY~R~~~~ 489 (733)
..|+|+|||+|.|. ..+ |||+||+|..+++||+|||+.|+++++++|+... ||||||+|++..
T Consensus 326 ~~Y~L~avv~H~G~s~~~---GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~ 396 (404)
T 2ayn_A 326 GYYDLQAVLTHQGRSSSS---GHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVE 396 (404)
T ss_dssp SEEEEEEEEEEESSSTTS---SEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC---
T ss_pred ceEEEEEEEEecCCCCCC---CCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCCC
Confidence 78999999999996 443 9999999987899999999999999999998655 999999998653
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.9e-57 Score=514.60 Aligned_cols=304 Identities=31% Similarity=0.568 Sum_probs=256.2
Q ss_pred CCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccC--CCCchHHHHHHHHHHHHhccCC----------CCCChHH
Q 004724 179 PCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKEC--GRDDWCFLCEFQTHVEKASQSS----------HPFSPMS 246 (733)
Q Consensus 179 p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~--~~~~~~~l~~L~~lf~~l~~s~----------~~isP~~ 246 (733)
.+||.|+||||||||+||+|+++|+|+++++...+...+ .....++.++|..++..++... ..+.|..
T Consensus 141 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 220 (476)
T 3mhs_A 141 LSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTG 220 (476)
T ss_dssp CCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHH
T ss_pred CCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccccCcch
Confidence 499999999999999999999999999999865443222 2335678999999999887532 1345555
Q ss_pred HHh---hccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCC--CCCCCcccccccceeceeEEeEEEeCCCCCc
Q 004724 247 ILS---RLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKA--VPPRSQETTLIQHIFGGHLQSQVICSKCNNI 321 (733)
Q Consensus 247 ll~---~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~--~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~ 321 (733)
++. .+++..+.|..++||||+|||.+||+.|++++......... ........++|.++|+|++++.++|..|+++
T Consensus 221 ~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~~~ 300 (476)
T 3mhs_A 221 FIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNN 300 (476)
T ss_dssp HHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTCCC
T ss_pred HHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCCCe
Confidence 444 44577888999999999999999999999987654332111 1122345689999999999999999999999
Q ss_pred ccc-ccccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecC---cc
Q 004724 322 SNQ-YENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG---RF 397 (733)
Q Consensus 322 s~~-~E~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~---~~ 397 (733)
+.+ .++|++|+|+|++ ..+|+++|+.|+.+|.+++.+ |.|++|+.++.+.|+.+|.+||+||+|||+||.+. ..
T Consensus 301 s~~~~e~f~~LsL~i~~-~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~ 378 (476)
T 3mhs_A 301 SKTTIDPFLDLSLDIKD-KKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSN 378 (476)
T ss_dssp CEEEEEEESCEEECCTT-CCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCE
T ss_pred eCCcccchhhhccchhh-hhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCe
Confidence 754 8999999999984 689999999999999999655 99999999999999999999999999999999853 35
Q ss_pred ccccceEecCCcCCCCCCcCCCC---------CCcceeEEEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeee
Q 004724 398 GKLNKRVTFPETLDLSPYMSDGG---------DRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSV 468 (733)
Q Consensus 398 ~Ki~~~V~FP~~LdL~~~~~~~~---------~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v 468 (733)
.|+++.|.||..|||.+|+.... .....|+|+|||+|.|+..+ |||++|+|..+++||+|||+.|+++
T Consensus 379 ~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~---GHY~a~vr~~~~~W~~fnD~~V~~v 455 (476)
T 3mhs_A 379 RKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNE---GHYIAFCKISGGQWFKFNDSMVSSI 455 (476)
T ss_dssp EECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSS---EEEEEEEECTTSCEEEEETTEEEEE
T ss_pred EECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCC---CceEEEEECCCCcEEEEeCCceEEC
Confidence 79999999999999999987643 24568999999999997544 9999999987899999999999999
Q ss_pred chhhhcCCCcEEEEEEEcC
Q 004724 469 DLEEVLSQGAYMLLYNRVS 487 (733)
Q Consensus 469 ~~e~vl~~~AYiLfY~R~~ 487 (733)
++++|+..+||||||+|++
T Consensus 456 ~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 456 SQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp CHHHHTTSCEEEEEEEEEE
T ss_pred CHHHhccCCcEEEEEEEec
Confidence 9999999999999999975
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=5.8e-57 Score=501.91 Aligned_cols=288 Identities=22% Similarity=0.348 Sum_probs=244.8
Q ss_pred CCCCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCC-------chHHHHHHHHHHHHhccCC-CCCChHHH
Q 004724 176 GFAPCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRD-------DWCFLCEFQTHVEKASQSS-HPFSPMSI 247 (733)
Q Consensus 176 ~~~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~-------~~~~l~~L~~lf~~l~~s~-~~isP~~l 247 (733)
...|+||.|+||||||||+||+|+++|+|+++|+........... ..+++++|+.+|..|+.+. ..++|..|
T Consensus 21 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~ 100 (415)
T 1vjv_A 21 AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVL 100 (415)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHH
T ss_pred CCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHHH
Confidence 446799999999999999999999999999999986654333222 4589999999999998775 78999999
Q ss_pred HhhccccCCCCC-------CCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCC
Q 004724 248 LSRLPNIGGNLG-------YGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNN 320 (733)
Q Consensus 248 l~~L~~~~~~f~-------~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~ 320 (733)
+..|+...+.|. .++||||+|||.+||+.|++++.. ++|.++|+ ++++.++|..|++
T Consensus 101 ~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------~~i~~~F~-~~~~~~~C~~C~~ 164 (415)
T 1vjv_A 101 LNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------KFSEDFRI-QFKTTIKDTANDN 164 (415)
T ss_dssp HHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------HHHTTTCE-EEEEEEEETTEEE
T ss_pred HHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------chHHHHHH-hheEEEEECCCCC
Confidence 999998888887 789999999999999999988632 67999999 9999999999999
Q ss_pred cc--ccccccccchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc--
Q 004724 321 IS--NQYENMMDLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR-- 396 (733)
Q Consensus 321 ~s--~~~E~f~~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~-- 396 (733)
.+ .+.|+|++|+|+|++...+|+++|+.|+.+ .++ +.|+.|++...+.|+..|.+||+||+|||+||.++.
T Consensus 165 ~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~ 239 (415)
T 1vjv_A 165 DITVKENESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRST 239 (415)
T ss_dssp EEEEECCCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTT
T ss_pred CccccccccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCC
Confidence 86 589999999999987667999999999874 444 899999999999999999999999999999998653
Q ss_pred --cccccceEecCCcCCCCCCcCCC-------------------------------------------------------
Q 004724 397 --FGKLNKRVTFPETLDLSPYMSDG------------------------------------------------------- 419 (733)
Q Consensus 397 --~~Ki~~~V~FP~~LdL~~~~~~~------------------------------------------------------- 419 (733)
..|+++.|.||..|||.+|+..+
T Consensus 240 ~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 319 (415)
T 1vjv_A 240 NKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNES 319 (415)
T ss_dssp TEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHH
T ss_pred CcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHh
Confidence 47999999999999999998531
Q ss_pred --------------------CCCcceeEEEEEEEEecC-CCCCCCCeEEEEEEc--CCCCEEEEeCCceeeechhhhcCC
Q 004724 420 --------------------GDRTDVYKLYAVVVHVDM-LNASFFGHYICYVKD--FRGHWYRVDDCKVTSVDLEEVLSQ 476 (733)
Q Consensus 420 --------------------~~~~~~Y~L~aVV~H~G~-~~ss~~GHY~a~vr~--~~g~W~~fnDs~V~~v~~e~vl~~ 476 (733)
......|+|+|||+|.|. ..+ |||+||+|. .+++||+|||+.|+++++++|+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~---GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~ 396 (415)
T 1vjv_A 320 EKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSES---GHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESL 396 (415)
T ss_dssp HHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTS---SEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGG
T ss_pred hhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCC---CCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhh
Confidence 123478999999999995 444 999999997 689999999999999999999865
Q ss_pred C-------cEEEEEEEcC
Q 004724 477 G-------AYMLLYNRVS 487 (733)
Q Consensus 477 ~-------AYiLfY~R~~ 487 (733)
. ||||||+|++
T Consensus 397 ~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 397 AGGGESDSALILMYKGFG 414 (415)
T ss_dssp GCCTTSCEEEEEEEEETT
T ss_pred cCCCCcceEEEEEEEecC
Confidence 5 9999999975
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-55 Score=504.79 Aligned_cols=296 Identities=27% Similarity=0.397 Sum_probs=256.3
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHHHHHHHHhccCCCCCChHHHHhhccccCCC
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEFQTHVEKASQSSHPFSPMSILSRLPNIGGN 257 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L~~lf~~l~~s~~~isP~~ll~~L~~~~~~ 257 (733)
+++||.|+||||||||+||+|+++|+|+++++...... .....++.++|+.+|..|+.+..++.|..|+..+.. +.
T Consensus 174 g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~--~~ 249 (522)
T 2f1z_A 174 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGW--ET 249 (522)
T ss_dssp SCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS--SCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTCC--CT
T ss_pred CccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC--CcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcCC--cc
Confidence 45999999999999999999999999999998754322 122346889999999999988888999999887753 56
Q ss_pred CCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccccchhhccC
Q 004724 258 LGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMMDLTVEIHG 337 (733)
Q Consensus 258 f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~~L~L~I~~ 337 (733)
|..++||||||||.+||+.|++++.. ....++|.++|+|++++.++|..|++.+.+.++|++|+|+|++
T Consensus 250 ~~~~~QqDa~Efl~~LLd~L~~~l~~-----------~~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~ 318 (522)
T 2f1z_A 250 LDSFMQHDVQELCRVLLDNVENKMKG-----------TCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG 318 (522)
T ss_dssp TTSSTTSCHHHHHHHHHHHHHHHHTT-----------STTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTT
T ss_pred CCCcccccHHHHHHHHHHHHHhhccC-----------CccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCC
Confidence 88899999999999999999987642 1234689999999999999999999999999999999999985
Q ss_pred CcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCc----cccccceEecCCcCCCC
Q 004724 338 DAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGR----FGKLNKRVTFPETLDLS 413 (733)
Q Consensus 338 ~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~----~~Ki~~~V~FP~~LdL~ 413 (733)
..+|+++|..|+..|.|+++++|.|+.|+ ++.+.|++.|.+||+||+|||+||.++. ..|+++.|.||..|||.
T Consensus 319 -~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~ 396 (522)
T 2f1z_A 319 -KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD 396 (522)
T ss_dssp -CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECG
T ss_pred -cccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecch
Confidence 57999999999999999999999999996 5789999999999999999999998643 47999999999999999
Q ss_pred CCcCCCC-CCcceeEEEEEEEEecCCCCCCCCeEEEEEEc-CCCCEEEEeCCceeeechhhhcC---------------C
Q 004724 414 PYMSDGG-DRTDVYKLYAVVVHVDMLNASFFGHYICYVKD-FRGHWYRVDDCKVTSVDLEEVLS---------------Q 476 (733)
Q Consensus 414 ~~~~~~~-~~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~-~~g~W~~fnDs~V~~v~~e~vl~---------------~ 476 (733)
+|+.... .....|+|+|||+|.|...+ |||+||+|. .+++||+|||+.|+++++++|+. .
T Consensus 397 ~~~~~~~~~~~~~Y~L~avv~H~G~~~~---GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~ 473 (522)
T 2f1z_A 397 EFLQKTDPKDPANYILHAVLVHSGDNHG---GHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCT 473 (522)
T ss_dssp GGBSSCCTTSCCEEEEEEEEEEECSSSC---SEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CE
T ss_pred hhhccccCCCCcEEEEEEEEEecccCCC---ceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCC
Confidence 9997643 34578999999999998644 999999996 67899999999999999999874 4
Q ss_pred CcEEEEEEEcCCCCCCc
Q 004724 477 GAYMLLYNRVSARPSYL 493 (733)
Q Consensus 477 ~AYiLfY~R~~~~~~~~ 493 (733)
+||||||+|.+.....+
T Consensus 474 ~aYiLfY~r~~~~~~~~ 490 (522)
T 2f1z_A 474 NAYMLVYIRESKLSEVL 490 (522)
T ss_dssp EEEEEEEEETTSHHHHT
T ss_pred ceEEEEEEECCchHHhh
Confidence 79999999997654433
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.4e-52 Score=497.56 Aligned_cols=223 Identities=20% Similarity=0.273 Sum_probs=195.0
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCC---ccCCCCchHHHHHHHHHHHHhcc-----------------
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHR---KECGRDDWCFLCEFQTHVEKASQ----------------- 237 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~---~~~~~~~~~~l~~L~~lf~~l~~----------------- 237 (733)
+.+||.|+||||||||+||+|+++|+|+++|+..... ........+++++|+.+|..|+.
T Consensus 343 G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~ 422 (854)
T 3ihp_A 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVP 422 (854)
T ss_dssp TCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------------
T ss_pred CccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcccccccccccccccccc
Confidence 4499999999999999999999999999999743211 11223445799999999998864
Q ss_pred ----CCCCCChHHHHhhccccCCCCCCCCcCCHHHHHHHHHHHHhhhhhhhcCCCCCCCCCCcccccccceeceeEEeEE
Q 004724 238 ----SSHPFSPMSILSRLPNIGGNLGYGRQEDAHEFMRFAIDTMQSICLDEFGGEKAVPPRSQETTLIQHIFGGHLQSQV 313 (733)
Q Consensus 238 ----s~~~isP~~ll~~L~~~~~~f~~g~QqDA~EFL~~LLd~L~e~l~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i 313 (733)
....++|..|+..++...+.|..++||||+|||.+||+.|++++.. .++|.++|+|++++++
T Consensus 423 ~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~--------------~s~i~~lF~G~l~s~i 488 (854)
T 3ihp_A 423 EQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS--------------SENPNEVFRFLVEEKI 488 (854)
T ss_dssp ------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT--------------SCCGGGGTCEEEEEEE
T ss_pred ccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc--------------cCCchhhcCceEEEEE
Confidence 2457899999999999999999999999999999999999987521 3568999999999999
Q ss_pred EeCCCCCccccccccccchhhccCC-------------------------------cccHHHHHHhcccceecCCCCCcc
Q 004724 314 ICSKCNNISNQYENMMDLTVEIHGD-------------------------------AASLEECLDQFTAKEWLDGDNMYK 362 (733)
Q Consensus 314 ~C~~C~~~s~~~E~f~~L~L~I~~~-------------------------------~~sLed~L~~~~~~E~L~g~n~y~ 362 (733)
+|..|++++.+.++|++|+|+|+.. ..+|++||+.|+.+|.|++ |.
T Consensus 489 ~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~ 565 (854)
T 3ihp_A 489 KCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FW 565 (854)
T ss_dssp EETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EE
T ss_pred EecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---ee
Confidence 9999999999999999999999742 1499999999999999997 99
Q ss_pred cCCCCccceeEEEEEeecCCceEEEEEeeeecC---ccccccceEecCCcCCCCCCcC
Q 004724 363 CDGCNDYVKAWKRLTVRRAPNILTIALKRFQSG---RFGKLNKRVTFPETLDLSPYMS 417 (733)
Q Consensus 363 C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~---~~~Ki~~~V~FP~~LdL~~~~~ 417 (733)
|++|+.++.+.|++.|.+||+||+||||||.++ ...|+++.|.||..|||.+|+.
T Consensus 566 C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~ 623 (854)
T 3ihp_A 566 STALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRG 623 (854)
T ss_dssp ETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBC
T ss_pred ccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhcc
Confidence 999999999999999999999999999999873 3469999999999999999965
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.96 E-value=2.1e-30 Score=277.50 Aligned_cols=223 Identities=19% Similarity=0.223 Sum_probs=156.8
Q ss_pred CCCCcccCCCccchHHHHHHHhcCHHHHHHHHhcCCCccCCCCchHHHHHH-HHHHHHhccCCCCCChHHHHhhccccCC
Q 004724 178 APCGLLNCGNSCFANVVLQCLTYTRPLVAYLLEKGHRKECGRDDWCFLCEF-QTHVEKASQSSHPFSPMSILSRLPNIGG 256 (733)
Q Consensus 178 ~p~GL~NlGNTCYlNSvLQ~L~~ip~fr~~Ll~~~~~~~~~~~~~~~l~~L-~~lf~~l~~s~~~isP~~ll~~L~~~~~ 256 (733)
.|+||+|+||||||||+||+|+.+|++++.|+..............+...| +.+|..|.. ..+.|..++..|++..+
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~p 85 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILE 85 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhH
Confidence 469999999999999999999999999999998754443323334577788 889999986 88999999999988776
Q ss_pred CCC-----CCCcCCHHHHHHHHHHHHhhh-hh-hhcCCCCCCCCCCcccccccceeceeEEeEEEeCCCCCccccccccc
Q 004724 257 NLG-----YGRQEDAHEFMRFAIDTMQSI-CL-DEFGGEKAVPPRSQETTLIQHIFGGHLQSQVICSKCNNISNQYENMM 329 (733)
Q Consensus 257 ~f~-----~g~QqDA~EFL~~LLd~L~e~-l~-~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~s~~~E~f~ 329 (733)
+|. .++||||+|||..||..|... +. +...+ ......+++.++|. +-. ....
T Consensus 86 Qfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~-----~~~~~~~~~~q~f~----------E~~-e~~~----- 144 (374)
T 2vhf_A 86 KVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSA-----GQKVQDCYFYQIFM----------EKN-EKVG----- 144 (374)
T ss_dssp HHC--------CCCHHHHHHHHHTTTTCCCCSEEEEET-----TCCCEEESCEECCC----------CCC---CC-----
T ss_pred HHhcccCCCccccCHHHHHHHHHHHHhhcccccccccc-----cccccccHHHHHhc----------Ccc-cccC-----
Confidence 553 478999999999999999754 21 10000 00112245666665 000 0000
Q ss_pred cchhhccCCcccHHHHHHhcccceecCCCCCcccCCCCccceeEEEEEeecCCceEEEEEeeeecCccccccceEecCCc
Q 004724 330 DLTVEIHGDAASLEECLDQFTAKEWLDGDNMYKCDGCNDYVKAWKRLTVRRAPNILTIALKRFQSGRFGKLNKRVTFPET 409 (733)
Q Consensus 330 ~L~L~I~~~~~sLed~L~~~~~~E~L~g~n~y~C~~C~~~~~a~K~~~I~~lP~vLiI~LkRF~~~~~~Ki~~~V~FP~~ 409 (733)
..+.+.+++..+-..- +.|.+||++|+||+.|| +...||.++|.||.+
T Consensus 145 ---------~e~~~qL~e~nfl~~g---------------------ikisrLP~yLtVq~vRF--gKkaKIlrkV~fp~e 192 (374)
T 2vhf_A 145 ---------VPTIQQLLEWSFINSN---------------------LKFAEAPSCLIIQMPRF--GKDFKLFKKIFPSLE 192 (374)
T ss_dssp ---------CCBHHHHHHHHHHHHT---------------------EEESSCCSEEEEECCCC--SSSSSCCCCCBCCSE
T ss_pred ---------CcHHHHhhhHHHHHcC---------------------CeeecCCcceEEeeecc--CccccccCCCCCcch
Confidence 2234444432211111 12999999999999999 566799999999999
Q ss_pred CCCCCCcCCC---------------------------C-----------------------------------------C
Q 004724 410 LDLSPYMSDG---------------------------G-----------------------------------------D 421 (733)
Q Consensus 410 LdL~~~~~~~---------------------------~-----------------------------------------~ 421 (733)
||+.+++++. . +
T Consensus 193 LDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (374)
T 2vhf_A 193 LNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCI 272 (374)
T ss_dssp ECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC--------------
T ss_pred hccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCC
Confidence 9998876421 0 0
Q ss_pred CcceeEEEEEEEEecCCCCCCCCeEEEEEEc--CCCCEEEEeC
Q 004724 422 RTDVYKLYAVVVHVDMLNASFFGHYICYVKD--FRGHWYRVDD 462 (733)
Q Consensus 422 ~~~~Y~L~aVV~H~G~~~ss~~GHY~a~vr~--~~g~W~~fnD 462 (733)
+...|+|+|||+ . ++|||+||||. .+++||.||-
T Consensus 273 psg~yeL~aVlt----a---dsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 273 PCQNMELFAVLC----I---ETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp --CCEEEEEEEE----E---ETTEEEEEEECSSSTTCEEEEET
T ss_pred CceeEEEEEEEE----c---cCCceEEEEEecCCCCCeEEEec
Confidence 125799999999 2 23999999997 5799999985
No 12
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=98.84 E-value=1.1e-09 Score=90.96 Aligned_cols=46 Identities=35% Similarity=0.937 Sum_probs=41.9
Q ss_pred CCccCCCcCCcccccCccCCCCccccccccccccccccccccccccc
Q 004724 69 DDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGK 115 (733)
Q Consensus 69 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~ 115 (733)
....|..|++.+.++|++|+.++||+++||+.||+. ||..|..+..
T Consensus 14 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~~~~ 59 (70)
T 2d8q_A 14 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAAQ 59 (70)
T ss_dssp CCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCCCCC
T ss_pred CCCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHHHHH
Confidence 356899999998899999999999999999999999 9999996653
No 13
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.79 E-value=1.3e-09 Score=87.87 Aligned_cols=46 Identities=37% Similarity=0.906 Sum_probs=41.5
Q ss_pred CCCccCCCcCCcccccCccCCCCcccccccccccccccccccccccc
Q 004724 68 SDDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIG 114 (733)
Q Consensus 68 ~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~ 114 (733)
.....|..|++.+.++|++|+.++||+++||..||+. ||..|..+.
T Consensus 13 ~~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~~-Hk~~C~~~~ 58 (60)
T 2dj8_A 13 DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICSGPS 58 (60)
T ss_dssp CCSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHH-HTTTSCCSS
T ss_pred CCCcccccCCCCCcccCCCCCCEeeeCHHHHHHHHHH-HHHHHHhcc
Confidence 3456899999988899999999999999999999997 999998654
No 14
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=98.75 E-value=1.5e-09 Score=87.56 Aligned_cols=45 Identities=38% Similarity=0.899 Sum_probs=40.7
Q ss_pred CCccCCCcCCcccccCccCCCCcccccccccccccccccccccccc
Q 004724 69 DDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIG 114 (733)
Q Consensus 69 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~ 114 (733)
....|..|++.+.++|++|+.++||+++||..||+. ||..|..+.
T Consensus 12 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~~-Hk~~C~~~~ 56 (60)
T 2od1_A 12 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICGQTL 56 (60)
T ss_dssp CSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHHH-HTTTSSCSS
T ss_pred CCCccccCCCcccccCCCCCCeeecCHHHHHHHHHH-HhHHHcccc
Confidence 446799999988899999999999999999999997 999998543
No 15
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=98.71 E-value=2.5e-09 Score=87.36 Aligned_cols=45 Identities=38% Similarity=0.899 Sum_probs=40.7
Q ss_pred CCccCCCcCCcccccCccCCCCcccccccccccccccccccccccc
Q 004724 69 DDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIG 114 (733)
Q Consensus 69 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~ 114 (733)
....|..|++.+.++|++|+.++|||++||..||+. ||..|..+.
T Consensus 16 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~-Hk~~C~~~~ 60 (64)
T 2odd_A 16 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHICGQTL 60 (64)
T ss_dssp CSSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHH-HTTTTTSSC
T ss_pred CCCcCccccCCCcccCCCCCChhhCCHHHHHHHHHH-HhHHHhccc
Confidence 456799999988899999999999999999999996 999998554
No 16
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=98.70 E-value=3.4e-09 Score=82.85 Aligned_cols=43 Identities=35% Similarity=1.008 Sum_probs=38.0
Q ss_pred CCccCCCcCCcccccCccCCCCcccccccccccccccccccccc
Q 004724 69 DDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKD 112 (733)
Q Consensus 69 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~ 112 (733)
....|..|++.+.++|++|+.++|||++||..||+. ||..|..
T Consensus 8 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C~~ 50 (52)
T 2jw6_A 8 KEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKD-HQHICGQ 50 (52)
T ss_dssp ---CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTT-GGGTTTC
T ss_pred cCCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHHH-HCHHHcc
Confidence 345799999998899999999999999999999997 9999974
No 17
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.66 E-value=5.6e-06 Score=92.24 Aligned_cols=48 Identities=31% Similarity=0.748 Sum_probs=41.8
Q ss_pred CCCccCCCcCCcc--cccCccCCCCcccccccccccccccccccccccccc
Q 004724 68 SDDLSCIVCGNPG--SKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKI 116 (733)
Q Consensus 68 ~~~~~C~~C~~~~--~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~ 116 (733)
.....|..|++.. ..+|++|+.++|||++||+.||+. ||..|..+...
T Consensus 47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~l~~~ 96 (433)
T 3qww_A 47 ERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL-HKLECSSMVVL 96 (433)
T ss_dssp GTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHH-HTTTHHHHHHS
T ss_pred ccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhH-HHHHHHHHHHh
Confidence 4567899999863 479999999999999999999986 99999988754
No 18
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.61 E-value=6.5e-06 Score=91.59 Aligned_cols=48 Identities=38% Similarity=0.843 Sum_probs=41.7
Q ss_pred CCCccCCCcCCcc--cccCccCCCCcccccccccccccccccccccccccc
Q 004724 68 SDDLSCIVCGNPG--SKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKI 116 (733)
Q Consensus 68 ~~~~~C~~C~~~~--~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~ 116 (733)
.....|..|++.. ..+|++|+.++|||++||+.||+. ||..|+.+...
T Consensus 45 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~~~~~ 94 (429)
T 3qwp_A 45 SRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPD-HKRECKCLKSC 94 (429)
T ss_dssp GBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHH-HHHHHHHHHHT
T ss_pred cCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhh-hHHhhhhHHhc
Confidence 4567899999853 479999999999999999999996 99999988754
No 19
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.45 E-value=1.4e-05 Score=90.56 Aligned_cols=48 Identities=31% Similarity=0.785 Sum_probs=41.6
Q ss_pred CCCccCCCcCCcc--cccCccCCCCcccccccccccccccccccccccccc
Q 004724 68 SDDLSCIVCGNPG--SKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDIGKI 116 (733)
Q Consensus 68 ~~~~~C~~C~~~~--~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~~~~ 116 (733)
.....|..|++.. ..+|++|+.++|||++||..||+. ||..|..+...
T Consensus 47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~~~~~ 96 (490)
T 3n71_A 47 LINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLN-HKNECAAIKKY 96 (490)
T ss_dssp GTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHH-HHHHHHHHHHH
T ss_pred ccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhH-HHHHhHHHHhc
Confidence 4567899998853 479999999999999999999996 99999988754
No 20
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=95.49 E-value=0.083 Score=52.50 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeec
Q 004724 430 AVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVD 469 (733)
Q Consensus 430 aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~ 469 (733)
+-++..|...+ |||+.+... .+ +.+|-..+.+++
T Consensus 162 ~~~vF~G~~~~---GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTGTTQN---GHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEESCTTT---CEEEEEETT-TT--EEEETTEEECCC
T ss_pred eEEEEEcCCCC---ceEEEEecc-cc--eEEeCCceeEcc
Confidence 44566898666 999999764 33 889999888886
No 21
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=94.12 E-value=0.84 Score=48.05 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeech
Q 004724 430 AVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDL 470 (733)
Q Consensus 430 aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~ 470 (733)
+-.+..|.... |||+.+... .+ =+++|-..+.+++.
T Consensus 261 ~a~vF~G~~~~---GHYt~~~~~-~~-~~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 261 CANEYTGNYQC---GHYTHITAK-ET-LYRIDGAHLTKMSE 296 (315)
T ss_dssp EEEEEESCGGG---CEEEEEEES-SS-EEEEETTEEEEESE
T ss_pred EEEEEECCCCc---cceEEEecC-Cc-eeEEeCCcceeccc
Confidence 34445787655 999999874 23 38999999998864
No 22
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.67 E-value=0.029 Score=44.01 Aligned_cols=38 Identities=32% Similarity=0.897 Sum_probs=30.0
Q ss_pred CccCCCcCCcccccCccCCCCccccccccccccccccccccccc
Q 004724 70 DLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCKDI 113 (733)
Q Consensus 70 ~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~~~ 113 (733)
...|.+|+..+..+|.+|. ++|||..|. +. ||..|...
T Consensus 12 ~~~C~vC~~~~kY~CPrC~-~~yCSl~C~----k~-Hk~~C~~~ 49 (56)
T 2yqq_A 12 TVVCVICLEKPKYRCPACR-VPYCSVVCF----RK-HKEQCNPE 49 (56)
T ss_dssp CCCCTTTCSCCSEECTTTC-CEESSHHHH----HH-HHHHCCCC
T ss_pred CCccCcCcCCCeeeCCCCC-CCeeCHHHH----HH-HHhhCcCC
Confidence 3469999996668999999 899999995 44 66557543
No 23
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=93.17 E-value=0.022 Score=45.04 Aligned_cols=36 Identities=33% Similarity=0.879 Sum_probs=28.6
Q ss_pred CCccCCCcCC----cccccCccCCCCccccccccccccccccccccc
Q 004724 69 DDLSCIVCGN----PGSKKCSRCKSVRYCSSKCQTSHWQSGHKRKCK 111 (733)
Q Consensus 69 ~~~~C~~C~~----~~~~~Cs~C~~~~YCs~~cQ~~~W~~~Hk~~C~ 111 (733)
+...|.+|+. .+..+|.+|. ++|||..|.+. || .|.
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~-----Hk-~Cs 49 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRT-----HG-TCA 49 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTC-CEESSHHHHHH-----HC-CGG
T ss_pred CCCcCcCCCCCcCCCccccCcCCC-CCccChHHHHH-----Hh-HhC
Confidence 3468999985 4567999999 89999999874 55 564
No 24
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=72.89 E-value=0.98 Score=41.67 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=28.0
Q ss_pred EEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeeechh
Q 004724 428 LYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLE 471 (733)
Q Consensus 428 L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v~~e 471 (733)
..|-|.-.|. +|-+-++-. ...||.+||+...+..+.
T Consensus 109 fhAgIflkg~------eHAVFa~~T-S~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 109 FHAGIFLKGQ------EHAVFACVT-SNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp EEEEEEEETT------TEEEEEECC-TTSSEEEETTEEEECCCC
T ss_pred hhhheeecCC------CceEEEEEc-cCceEEecccccccCCCC
Confidence 3555656664 898888886 566999999999988553
No 25
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=34.03 E-value=9.5 Score=30.91 Aligned_cols=35 Identities=23% Similarity=0.520 Sum_probs=24.6
Q ss_pred CCccCCCcCCcccccCccCCCCccccccccccc---ccc
Q 004724 69 DDLSCIVCGNPGSKKCSRCKSVRYCSSKCQTSH---WQS 104 (733)
Q Consensus 69 ~~~~C~~C~~~~~~~Cs~C~~~~YCs~~cQ~~~---W~~ 104 (733)
....|..||++..-+= .=..+.|||+.|+..| |..
T Consensus 8 ~~~~CP~Cgkp~~W~~-~~~~rPFCSeRCr~iDLg~Wa~ 45 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGE-ISPFRPFCSKRCQLIDLGEWAA 45 (68)
T ss_dssp CEEECTTTCCEEECSS-SSSCCSSSSHHHHHHHHSCSSS
T ss_pred CcCcCCCCCCcccccc-cCCCCcccCHHHHhhhHHHHhc
Confidence 4567999999875221 1345789999999876 555
No 26
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.35 E-value=87 Score=28.63 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=13.1
Q ss_pred eEEeEEEeCCCCCcccccc
Q 004724 308 HLQSQVICSKCNNISNQYE 326 (733)
Q Consensus 308 ~l~s~i~C~~C~~~s~~~E 326 (733)
...-..+|.+||+.....+
T Consensus 66 ~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp EECCEEEETTTCCEEEGGG
T ss_pred ecCCcEECCCCCCEEeccc
Confidence 3445779999998755433
No 27
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=20.74 E-value=1.6e+02 Score=28.61 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=37.6
Q ss_pred EEEEEEEecCCCCCCCCeEEEEEEcCCCCEEEEeCCceeee--chhhh------cCCCcEEEEEEEcC
Q 004724 428 LYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSV--DLEEV------LSQGAYMLLYNRVS 487 (733)
Q Consensus 428 L~aVV~H~G~~~ss~~GHY~a~vr~~~g~W~~fnDs~V~~v--~~e~v------l~~~AYiLfY~R~~ 487 (733)
..|+|++.. -|++|..|- +|+||.+|=..-.+. +...+ +....|=+|-++-+
T Consensus 110 ~~~FI~N~~-------~HWfaiRki-gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~ 169 (191)
T 3o65_A 110 ERSFICNYK-------QHWFTIRKF-GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGD 169 (191)
T ss_dssp CCEEEEEES-------SCEEEEEEE-TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESC
T ss_pred hhhhhhccc-------cceeeEEec-CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468888874 899999985 899999998654443 22211 24578999998853
No 28
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=20.34 E-value=1.9e+02 Score=27.29 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=19.3
Q ss_pred CeEEEEEEcCCCCEEEEeCCceeeechhhh
Q 004724 444 GHYICYVKDFRGHWYRVDDCKVTSVDLEEV 473 (733)
Q Consensus 444 GHY~a~vr~~~g~W~~fnDs~V~~v~~e~v 473 (733)
| -+.-|-=.+|.|+-||+..-.+|+..++
T Consensus 131 G-~f~dvDLse~eW~DYDEk~~~~VsI~e~ 159 (164)
T 1zso_A 131 K-LYYDVNLSDQNWCDYNEEHEMCVGIYNL 159 (164)
T ss_dssp C-EEEEECCTTSCEEEEETTTTEEEEEEEE
T ss_pred C-cEEeeecCCCceeccccCCCCeEEEEEE
Confidence 7 3333433467899999988777765544
Done!