BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004725
(733 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 297/728 (40%), Positives = 435/728 (59%), Gaps = 18/728 (2%)
Query: 11 IEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYS 70
I+ F+ R + Y + TW+ L A+ + + + + EELY+ N+ HK LY
Sbjct: 45 IKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYK 104
Query: 71 GLVTTMTFHL-TEICKSIE-AAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPST 128
L H+ +I E + LFL+++N W DH + + MIR I +++DRT++
Sbjct: 105 QLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQN 164
Query: 129 HKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL 187
P + ++GL L+R +I +Q++ D +L L++RERSGE ++R L+R++ ML DL
Sbjct: 165 STLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDL 224
Query: 188 GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARS 247
VY+D FE FLE + Y E Q ++ + +YL +RL EE +RV YLD +
Sbjct: 225 Q--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHST 282
Query: 248 EAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDV 307
+ + VEK+++ H+ ++ GL ++L +++ DL +MY LF RV G +
Sbjct: 283 QKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQH 339
Query: 308 MTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEY 367
+ YI+ G +V +PE+ KD VQ LLD KDK D VI F ++ F N + SFE
Sbjct: 340 WSEYIKTFGTAIVINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFET 396
Query: 368 FINLNSRSP-EFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQH 426
FIN P E I+ VD KLR G + ++E++E LDK+M+LFRF+ KDVFE +YK+
Sbjct: 397 FINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKD 456
Query: 427 LAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAES 486
LAKRLL GK+ S DAE+S++ KLK ECG FTSKLEGMF DM+ S+D M F + +S
Sbjct: 457 LAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS 516
Query: 487 GDSPT-LTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTA 545
P LTV +LT G WPT +L E++ + E F+++YLG H+GR+L WQT +G A
Sbjct: 517 DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHA 576
Query: 546 DLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605
LK F +G+K E VS +Q VL++FN D S++EI+ AT I EL+R LQSLAC K
Sbjct: 577 VLKAEFKEGKK-EFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGK 635
Query: 606 GKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRK 665
+ VL K P K++ + D F FN +F K ++KI + +E+ E T +RV +DR+
Sbjct: 636 AR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQ-IQMKETVEEQVSTTERVFQDRQ 693
Query: 666 PQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 725
QI+AAIVRIMK R+ L HN +V+E+ QL +F P +KKRIESLI+R+++ERDK +
Sbjct: 694 YQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDKDN 751
Query: 726 RKLYRYLA 733
Y Y+A
Sbjct: 752 PNQYHYVA 759
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 516 bits (1329), Expect = e-146, Method: Compositional matrix adjust.
Identities = 297/728 (40%), Positives = 435/728 (59%), Gaps = 18/728 (2%)
Query: 11 IEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYS 70
I+ F+ R + Y + TW+ L A+ + + + + EELY+ N+ HK LY
Sbjct: 28 IKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYK 87
Query: 71 GLVTTMTFHL-TEICKSIE-AAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPST 128
L H+ +I E + LFL+++N W DH + + MIR I +++DRT++
Sbjct: 88 QLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQN 147
Query: 129 HKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL 187
P + ++GL L+R +I +Q++ D +L L++RERSGE ++R L+R++ ML DL
Sbjct: 148 STLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDL 207
Query: 188 GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARS 247
VY+D FE FLE + Y E Q ++ + +YL +RL EE +RV YLD +
Sbjct: 208 Q--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHST 265
Query: 248 EAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDV 307
+ + VEK+++ H+ ++ GL ++L +++ DL +MY LF RV G +
Sbjct: 266 QKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQH 322
Query: 308 MTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEY 367
+ YI+ G +V +PE+ KD VQ LLD KDK D VI F ++ F N + SFE
Sbjct: 323 WSEYIKTFGTAIVINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFET 379
Query: 368 FINLNSRSP-EFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQH 426
FIN P E I+ VD KLR G + ++E++E LDK+M+LFRF+ KDVFE +YK+
Sbjct: 380 FINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKD 439
Query: 427 LAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAES 486
LAKRLL GK+ S DAE+S++ KLK ECG FTSKLEGMF DM+ S+D M F + +S
Sbjct: 440 LAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS 499
Query: 487 GDSPT-LTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTA 545
P LTV +LT G WPT +L E++ + E F+++YLG H+GR+L WQT +G A
Sbjct: 500 DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHA 559
Query: 546 DLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605
LK F +G+K E VS +Q VL++FN D S++EI+ AT I EL+R LQSLAC K
Sbjct: 560 VLKAEFKEGKK-EFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGK 618
Query: 606 GKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRK 665
+ VL K P K++ + D F FN +F K ++KI + +E+ E T +RV +DR+
Sbjct: 619 AR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQ-IQMKETVEEQVSTTERVFQDRQ 676
Query: 666 PQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 725
QI+AAIVRIMK R+ L HN +V+E+ QL +F P +KKRIESLI+R+++ERDK +
Sbjct: 677 YQIDAAIVRIMKMRKTLGHNLLVSELYNQL--KFPVKPGDLKKRIESLIDRDYMERDKDN 734
Query: 726 RKLYRYLA 733
Y Y+A
Sbjct: 735 PNQYHYVA 742
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 293/728 (40%), Positives = 442/728 (60%), Gaps = 18/728 (2%)
Query: 11 IEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYS 70
I+ FK + + Y ++TW+ L+ A+ I N + + EELY+ N+ +K LY
Sbjct: 12 IKNFKDKPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYK 71
Query: 71 GLVTTMTFHLTEICKSI--EAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPST 128
L H+ ++ LFL++++R W +H + + MIR I +++DRT++
Sbjct: 72 QLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQN 131
Query: 129 HKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL 187
P + ++GL L+R +I K+Q + D +L L++RER+GE I+R L+R++ ML DL
Sbjct: 132 SMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDL 191
Query: 188 GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARS 247
+YQD FE+ FLE + Y E Q+ ++ + +YL +RL EE +R+ YLD +
Sbjct: 192 Q--IYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTT 249
Query: 248 EAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDV 307
+ + VEK+++ H+ ++ GL N+L +++ +DL +Y LF RV G+ ++
Sbjct: 250 QKSLIATVEKQLLGEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQ 306
Query: 308 MTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEY 367
YI+ G +V +PE+ K VQ LLD KDK D +I+ F ++ F NA+ +FE
Sbjct: 307 WIEYIKAFGSTIVINPEKDKT---MVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFET 363
Query: 368 FINLNSRSP-EFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQH 426
FIN P E I+ +VD KLR G + ++E++E +LDK+M++FRF+ KDVFE +YK+
Sbjct: 364 FINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKD 423
Query: 427 LAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAES 486
LAKRLL GK+ S DAE+S++ KLK ECG FTSKLEGMF DM+ S+D M F + ++
Sbjct: 424 LAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQN 483
Query: 487 -GDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTA 545
+ LTV +LT G WPT +LP E++ + E F+++YLG H+GR+L WQ+ +G
Sbjct: 484 VPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHC 543
Query: 546 DLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605
LK F +G+K EL VS +Q VL++FN + S +EI+QAT I EL+R LQSLAC K
Sbjct: 544 VLKAEFKEGKK-ELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGK 602
Query: 606 GKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRK 665
+ VL K P KDI + D F ND F K ++KI + +E+ E T +RV +DR+
Sbjct: 603 AR-VLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQ-IQMKETVEEQASTTERVFQDRQ 660
Query: 666 PQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 725
QI+AAIVRIMK R+ L HN +V+EV QL +F P +KKRIESLI+R+++ERDK +
Sbjct: 661 YQIDAAIVRIMKMRKTLSHNLLVSEVYNQL--KFPVKPADLKKRIESLIDRDYMERDKEN 718
Query: 726 RKLYRYLA 733
Y Y+A
Sbjct: 719 PNQYNYIA 726
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 293/728 (40%), Positives = 442/728 (60%), Gaps = 18/728 (2%)
Query: 11 IEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYS 70
I+ FK + + Y ++TW+ L+ A+ I N + + EELY+ N+ +K LY
Sbjct: 27 IKNFKDKPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYK 86
Query: 71 GLVTTMTFHLTEICKSI--EAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPST 128
L H+ ++ LFL++++R W +H + + MIR I +++DRT++
Sbjct: 87 QLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQN 146
Query: 129 HKTP-VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDL 187
P + ++GL L+R +I K+Q + D +L L++RER+GE I+R L+R++ ML DL
Sbjct: 147 SMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDL 206
Query: 188 GSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARS 247
+YQD FE+ FLE + Y E Q+ ++ + +YL +RL EE +R+ YLD +
Sbjct: 207 Q--IYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTT 264
Query: 248 EAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDV 307
+ + VEK+++ H+ ++ GL N+L +++ +DL +Y LF RV G+ ++
Sbjct: 265 QKSLIATVEKQLLGEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQ 321
Query: 308 MTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEY 367
YI+ G +V +PE+ K VQ LLD KDK D +I+ F ++ F NA+ +FE
Sbjct: 322 WIEYIKAFGSTIVINPEKDKT---MVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFET 378
Query: 368 FINLNSRSP-EFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQH 426
FIN P E I+ +VD KLR G + ++E++E +LDK+M++FRF+ KDVFE +YK+
Sbjct: 379 FINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKD 438
Query: 427 LAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAES 486
LAKRLL GK+ S DAE+S++ KLK ECG FTSKLEGMF DM+ S+D M F + ++
Sbjct: 439 LAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQN 498
Query: 487 -GDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTA 545
+ LTV +LT G WPT +LP E++ + E F+++YLG H+GR+L WQ+ +G
Sbjct: 499 VPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHC 558
Query: 546 DLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605
LK F +G+K EL VS +Q VL++FN + S +EI+QAT I EL+R LQSLAC K
Sbjct: 559 VLKAEFKEGKK-ELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGK 617
Query: 606 GKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRK 665
+ VL K P KDI + D F ND F K ++KI + +E+ E T +RV +DR+
Sbjct: 618 AR-VLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQ-IQMKETVEEQASTTERVFQDRQ 675
Query: 666 PQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 725
QI+AAIVRIMK R+ L HN +V+EV QL +F P +KKRIESLI+R+++ERDK +
Sbjct: 676 YQIDAAIVRIMKMRKTLSHNLLVSEVYNQL--KFPVKPADLKKRIESLIDRDYMERDKEN 733
Query: 726 RKLYRYLA 733
Y Y+A
Sbjct: 734 PNQYNYIA 741
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 253/769 (32%), Positives = 409/769 (53%), Gaps = 71/769 (9%)
Query: 26 EKTWKILEHAIHEIYNHNASGLS-FEELYRNAYNMV--LHK------------------- 63
++ W L I ++Y + S + ELY + YN +H+
Sbjct: 2 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQT 61
Query: 64 ------FGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDIL 117
G +LY L + +LT + K E L+ ++W D+ + +++ I
Sbjct: 62 PGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGIC 121
Query: 118 MYMDRTFIPSTHKT------PVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEV 171
Y++R ++ ++ L L WRD + + ++ + +L+L+++ER+GE
Sbjct: 122 AYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRP--LNKQVTNAVLKLIEKERNGET 179
Query: 172 INRGLMRNITKMLMDLG-----SF-------VYQDDFEKHFLEVSADFYRLESQEFIESC 219
IN L+ + + ++LG +F VY++ FE FL + FY ES EF++
Sbjct: 180 INTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQN 239
Query: 220 DCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNML 279
+Y+KKAE RL EE RV YL ++ ++ E+ +IE H+ + H E N+L
Sbjct: 240 PVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHL-EIFHTE---FQNLL 295
Query: 280 VDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLV--SDPERLKDPVDFVQRLL 337
DK EDLGRMY L R+ GL ++ ++ ++I + G + L DP +VQ +L
Sbjct: 296 DADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVL 355
Query: 338 DLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLN---------SRSPEFISLFVDDKLR 388
D+ KY+ ++ SAFNND F AL+ + FIN N S+SPE ++ + D L+
Sbjct: 356 DVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLK 415
Query: 389 KGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVK 448
K + E ++E+ L++VM++F+++++KDVF+K+Y + LAKRL+ + SDDAE S+I K
Sbjct: 416 KSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISK 475
Query: 449 LKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSA 508
LK CG+++TSKL+ MF D+ S+D + F L ++QVL++GSWP Q S
Sbjct: 476 LKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSC 535
Query: 509 TCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCV 568
T LP+E+ ++F ++Y H+GR+LTW + +L K ++ L ST+QM +
Sbjct: 536 TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKN-RYTLQASTFQMAI 594
Query: 569 LMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGK-HVLRKEPMSKDIAE---DDA 624
L+ +N+ D + +++ +T+I L + LQ L +K K VL E + D E D
Sbjct: 595 LLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVLEDENANVDEVELKPDTL 652
Query: 625 FFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDH 684
+ +K ++V I V + E + E + T + +EEDRK I+AAIVRIMK R+VL H
Sbjct: 653 IKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKH 711
Query: 685 NNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 733
++ EV QL SRF P VIKK I+ LIE+E+LER ++ Y YLA
Sbjct: 712 QQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 253/769 (32%), Positives = 409/769 (53%), Gaps = 71/769 (9%)
Query: 26 EKTWKILEHAIHEIYNHNASGLS-FEELYRNAYNMV--LHK------------------- 63
++ W L I ++Y + S + ELY + YN +H+
Sbjct: 18 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQT 77
Query: 64 ------FGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDIL 117
G +LY L + +LT + K E L+ ++W D+ + +++ I
Sbjct: 78 PGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGIC 137
Query: 118 MYMDRTFIPSTHKT------PVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEV 171
Y++R ++ ++ L L WRD + + ++ + +L+L+++ER+GE
Sbjct: 138 AYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRP--LNKQVTNAVLKLIEKERNGET 195
Query: 172 INRGLMRNITKMLMDLG-----SF-------VYQDDFEKHFLEVSADFYRLESQEFIESC 219
IN L+ + + ++LG +F VY++ FE FL + FY ES EF++
Sbjct: 196 INTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQN 255
Query: 220 DCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNML 279
+Y+KKAE RL EE RV YL ++ ++ E+ +IE H+ + H E N+L
Sbjct: 256 PVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHL-EIFHTE---FQNLL 311
Query: 280 VDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLV--SDPERLKDPVDFVQRLL 337
DK EDLGRMY L R+ GL ++ ++ ++I + G + L DP +VQ +L
Sbjct: 312 DADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVL 371
Query: 338 DLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLN---------SRSPEFISLFVDDKLR 388
D+ KY+ ++ SAFNND F AL+ + FIN N S+SPE ++ + D L+
Sbjct: 372 DVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLK 431
Query: 389 KGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVK 448
K + E ++E+ L++VM++F+++++KDVF+K+Y + LAKRL+ + SDDAE S+I K
Sbjct: 432 KSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISK 491
Query: 449 LKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSA 508
LK CG+++TSKL+ MF D+ S+D + F L ++QVL++GSWP Q S
Sbjct: 492 LKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSC 551
Query: 509 TCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCV 568
T LP+E+ ++F ++Y H+GR+LTW + +L K ++ L ST+QM +
Sbjct: 552 TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKN-RYTLQASTFQMAI 610
Query: 569 LMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGK-HVLRKEPMSKDIAE---DDA 624
L+ +N+ D + +++ +T+I L + LQ L +K K VL E + D E D
Sbjct: 611 LLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVLEDENANVDEVELKPDTL 668
Query: 625 FFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDH 684
+ +K ++V I V + E + E + T + +EEDRK I+AAIVRIMK R+VL H
Sbjct: 669 IKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKH 727
Query: 685 NNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 733
++ EV QL SRF P VIKK I+ LIE+E+LER ++ Y YLA
Sbjct: 728 QQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/383 (48%), Positives = 258/383 (67%), Gaps = 6/383 (1%)
Query: 2 SAPKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVL 61
+ K +I AF + +D KY W +L++AI EI N SGLSFEELYRNAY MVL
Sbjct: 9 GSRKDTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVL 66
Query: 62 HKFGEKLYSGLVTTMTFHL-TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYM 120
HK GEKLY+GL +T HL ++ + + + FL+ LN+ W DH A+ MIRDILMYM
Sbjct: 67 HKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYM 126
Query: 121 DRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNI 180
DR ++ + V+ LGL ++RD V+ I+ L+ TLL+++ RER GEV++RG +RN
Sbjct: 127 DRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNA 186
Query: 181 TKMLMDLG---SFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEME 237
+MLM LG VY++DFE FLE+SA+F+++ESQ+F+ Y+KK E R+NEE+E
Sbjct: 187 CQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIE 246
Query: 238 RVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRV 297
RV H LD +E I VVE+E+I HM +V MENSGLV+ML + K EDLG MY LF RV
Sbjct: 247 RVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRV 306
Query: 298 PSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTF 357
P+GL + + M+SY+R+ GK LVS+ K+PVD+ Q L DLK ++D+ + +FNND+ F
Sbjct: 307 PNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLF 366
Query: 358 QNALNSSFEYFINLNSRSPEFIS 380
+ + FEYF+NLNSRSPE+++
Sbjct: 367 KQTIAGDFEYFLNLNSRSPEYLA 389
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 360 bits (923), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/367 (49%), Positives = 252/367 (68%), Gaps = 4/367 (1%)
Query: 18 VVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMT 77
+ +D KY W +L++AI EI N SGLSFEELYRNAY MVLHK GEKLY+GL +T
Sbjct: 1 MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVT 60
Query: 78 FHL-TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHEL 136
HL ++ + + + FL+ LN+ W DH A+ MIRDILMYMDR ++ + V+ L
Sbjct: 61 EHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNL 120
Query: 137 GLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLG---SFVYQ 193
GL ++RD V+ I+ L+ TLL+++ RER GEV++RG +RN +MLM LG VY+
Sbjct: 121 GLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYE 180
Query: 194 DDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITN 253
+DFE FLE+SA+F+++ESQ+F+ Y+KK E R+NEE+ERV H LD +E I
Sbjct: 181 EDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVK 240
Query: 254 VVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIR 313
VVE+E+I HM +V MENSGLV+ML + K EDLG MY LF RVP+GL + + M+SY+R
Sbjct: 241 VVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLR 300
Query: 314 DTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNS 373
+ GK LVS+ K+PVD+ Q L DLK ++D+ + +FNND+ F+ + FEYF+NLNS
Sbjct: 301 EQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS 360
Query: 374 RSPEFIS 380
RSPE+++
Sbjct: 361 RSPEYLA 367
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 314 bits (804), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 226/356 (63%), Gaps = 4/356 (1%)
Query: 21 DPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHL 80
D KY W +L++AI EI N SGLSFEELYRNAY VLHK GEKLY+GL +T HL
Sbjct: 9 DEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTXVLHKHGEKLYTGLREVVTEHL 68
Query: 81 -TEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLN 139
++ + + + FL+ LN+ W DH A IRDIL Y DR ++ + V+ LGL
Sbjct: 69 INKVREDVLNSLNNNFLQTLNQAWNDHQTAXVXIRDILXYXDRVYVQQNNVENVYNLGLI 128
Query: 140 LWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLG---SFVYQDDF 196
++RD V+ I+ L+ TLL+ + RER GEV++RG +RN + L LG VY++DF
Sbjct: 129 IFRDQVVRYGCIRDHLRQTLLDXIARERKGEVVDRGAIRNACQXLXILGLEGRSVYEEDF 188
Query: 197 EKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVE 256
E FLE SA+F++ ESQ+F+ Y+KK E R+NEE+ERV H LD +E I VVE
Sbjct: 189 EAPFLEXSAEFFQXESQKFLAENSASVYIKKVEARINEEIERVXHCLDKSTEEPIVKVVE 248
Query: 257 KEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTG 316
+E+I H +V ENSGLV+ L + K EDLG Y LF RVP+GL + +SY+R+ G
Sbjct: 249 RELISKHXKTIVEXENSGLVHXLKNGKTEDLGCXYKLFSRVPNGLKTXCECXSSYLREQG 308
Query: 317 KQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLN 372
K LVS+ K+PVD+ Q L DLK ++D+ + +FNND+ F+ + FEYF+NLN
Sbjct: 309 KALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 221/366 (60%), Gaps = 8/366 (2%)
Query: 372 NSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRL 431
+S+SPE ++ + D L+K + E ++E+ L++VM++F+++++KDVF+K+Y + LAKRL
Sbjct: 5 SSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRL 64
Query: 432 LSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPT 491
+ + SDDAE S+I KLK CG+++TSKL+ MF D+ S+D + F L
Sbjct: 65 VHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD 124
Query: 492 LTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTF 551
++QVL++GSWP Q S T LP+E+ ++F ++Y H+GR+LTW + +L
Sbjct: 125 FSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNC 184
Query: 552 GKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGK-HVL 610
K ++ L ST+QM +L+ +N+ D + +++ +T+I L + LQ L +K K VL
Sbjct: 185 FKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVL 241
Query: 611 RKEPMSKDIAE---DDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQ 667
E + D E D + +K ++V I V + E + E + T + +EEDRK
Sbjct: 242 EDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLL 300
Query: 668 IEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRK 727
I+AAIVRIMK R+VL H ++ EV QL SRF P VIKK I+ LIE+E+LER ++
Sbjct: 301 IQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKD 360
Query: 728 LYRYLA 733
Y YLA
Sbjct: 361 TYSYLA 366
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 218/366 (59%), Gaps = 8/366 (2%)
Query: 372 NSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRL 431
+S+SPE ++ + D L+K + E ++E+ L++VM F+ +++KDVF+K+Y + LAKRL
Sbjct: 7 SSKSPEELARYCDSLLKKSSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLAKRL 66
Query: 432 LSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPT 491
+ + SDDAE S+I KLK CG+++TSKL+ MF D+ S+D + F L
Sbjct: 67 VHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD 126
Query: 492 LTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTF 551
++QVL++GSWP Q S T LP+E+ ++F ++Y H+GR+LTW + +L
Sbjct: 127 FSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNC 186
Query: 552 GKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGK-HVL 610
K ++ L ST+QM +L+ +N+ D + +++ +T+I L + LQ L +K K VL
Sbjct: 187 FKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL--LKSKLLVL 243
Query: 611 RKEPMSKDIAE---DDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQ 667
E + D E D + +K ++V I V + E + E + T + +EEDRK
Sbjct: 244 EDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN-VPMKTEQKQEQETTHKNIEEDRKLL 302
Query: 668 IEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRK 727
I+AAIVRIMK R+VL H ++ EV QL SRF P VIKK I+ LIE+E+LER ++
Sbjct: 303 IQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKD 362
Query: 728 LYRYLA 733
Y YLA
Sbjct: 363 TYSYLA 368
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 194/350 (55%), Gaps = 11/350 (3%)
Query: 24 YAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEI 83
Y ++TW+ L+ A+ I N + + EELY+ N+ +K LY L H+
Sbjct: 9 YTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQ 68
Query: 84 CKSI--EAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTP-VHELGLNL 140
++ LFL++++R W +H + + MIR I +++DRT++ P + ++GL L
Sbjct: 69 IHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLEL 128
Query: 141 WRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHF 200
+R +I K+Q + D +L L++RER+GE I+R L+R++ ML DL +YQD FE+ F
Sbjct: 129 FRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQ--IYQDSFEQRF 186
Query: 201 LEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMI 260
LE + Y E Q+ ++ + +YL +RL EE +R+ YLD ++ + VEK+++
Sbjct: 187 LEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLL 246
Query: 261 ESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLV 320
H+ ++ GL N+L +++ +DL +Y LF RV G+ ++ YI+ G +V
Sbjct: 247 GEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIV 303
Query: 321 SDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFIN 370
+PE+ K Q L D KDK D +I+ F ++ F NA+ +FE FIN
Sbjct: 304 INPEKDK---TMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFIN 350
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|C Chain C, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 282
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 141/230 (61%), Gaps = 1/230 (0%)
Query: 372 NSRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRL 431
+S+SPE ++ + D L+K + E ++E+ L++VM F+ +++KDVF+K+Y + LAKRL
Sbjct: 7 SSKSPEELARYCDSLLKKSSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLAKRL 66
Query: 432 LSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPT 491
+ + SDDAE S+I KLK CG+++TSKL+ MF D+ S+D + F L
Sbjct: 67 VHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD 126
Query: 492 LTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTF 551
++QVL++GSWP Q S T LP+E+ ++F ++Y H+GR+LTW + +L
Sbjct: 127 FSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNC 186
Query: 552 GKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSL 601
K ++ L ST+QM +L+ +N+ D + +++ +T+I L + LQ L
Sbjct: 187 FKN-RYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQIL 235
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 190/396 (47%), Gaps = 54/396 (13%)
Query: 26 EKTWKILEHAIHEIYNHNASGLS-FEELYRNAYNMV--LHK------------------- 63
++ W L I ++Y + S + ELY + YN +H+
Sbjct: 4 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQT 63
Query: 64 ------FGEKLYSGLVTTMTFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDIL 117
G +LY L + +LT + K E L+ ++W D+ + +++ I
Sbjct: 64 PGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGIC 123
Query: 118 MYMDRTFI------PSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEV 171
Y++R ++ ++ L L WRD + + ++ + +L+L+++ER+GE
Sbjct: 124 AYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRP--LNKQVTNAVLKLIEKERNGET 181
Query: 172 INRGLMRNITKMLMDLG-----SF-------VYQDDFEKHFLEVSADFYRLESQEFIESC 219
IN L+ + + ++LG +F VY++ FE FL + FY ES EF++
Sbjct: 182 INTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQN 241
Query: 220 DCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNML 279
+Y+KKAE RL EE RV YL ++ ++ E+ +IE H+ + H E N+L
Sbjct: 242 PVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHL-EIFHTE---FQNLL 297
Query: 280 VDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLV--SDPERLKDPVDFVQRLL 337
DK EDLGRMY L R+ GL ++ ++ ++I + G + L DP +VQ +L
Sbjct: 298 DADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVL 357
Query: 338 DLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNS 373
D+ KY+ ++ SAFNND F AL+ + FIN N+
Sbjct: 358 DVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNA 393
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 202/385 (52%), Gaps = 30/385 (7%)
Query: 373 SRSPEFISLFVDDKLRKGL--RGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKR 430
S+ PE ++ + D LRK + ++ E++E L +V+ +++Q KDVF +Y+K HL +R
Sbjct: 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRR 63
Query: 431 LLSGKTVSDDAERSLIVKLKTECGY--QFTSKLEGMFTDMKTSQDTMQGFYASLGAESGD 488
L+ + + E +++ L+ E G + +KL MF D+K S+D Q F
Sbjct: 64 LILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLA 122
Query: 489 SP--TLTVQVLTTGSWP-TQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNM--G 543
P ++ +++L G+W + +LP E+ + + +Y H+GR+L W M G
Sbjct: 123 LPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNG 182
Query: 544 TADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDR--LSYKEIEQATEIPAPELKRCLQSL 601
K G+ ++L V+T+Q+ VL +N R +S++ ++ ATE+P EL+R L SL
Sbjct: 183 IITFKNEVGQ---YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 239
Query: 602 ACVKG--KHVLRKEPM---SKDIAEDDAFFFNDKFT-SKFVKVK-------IGTVVAQRE 648
+ VL EP KD E F N +F+ K KV+ IG + Q
Sbjct: 240 VAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLT 297
Query: 649 SEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKK 708
+E +E + + + R + + AI++IMK R+ + + + TE+ + L++ FLP +IK+
Sbjct: 298 TERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKE 357
Query: 709 RIESLIEREFLERDKVDRKLYRYLA 733
+IE LIE +++ RD+ D + Y+A
Sbjct: 358 QIEWLIEHKYIRRDESDINTFIYMA 382
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|D Chain D, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 197/385 (51%), Gaps = 30/385 (7%)
Query: 373 SRSPEFISLFVDDKLRKGL--RGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKR 430
S+ PE ++ + D LRK + ++ E++E L +V+ +++Q KDVF +Y+K HL +R
Sbjct: 4 SKCPEELANYCDXLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFXRYHKAHLTRR 63
Query: 431 LLSGKTVSDDAERSLIVKLKTECGY--QFTSKLEGMFTDMKTSQDTMQGFYASLGAESGD 488
L+ + + E + + L+ E G + +KL F D+K S+D Q F
Sbjct: 64 LILDISADSEIEENXVEWLR-EVGXPADYVNKLARXFQDIKVSEDLNQAFKEXHKNNKLA 122
Query: 489 SP--TLTVQVLTTGSWP-TQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQ--TNMG 543
P ++ +++L G+W + +LP E+ + + +Y H+GR+L W + G
Sbjct: 123 LPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLXSNG 182
Query: 544 TADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDR--LSYKEIEQATEIPAPELKRCLQSL 601
K G+ ++L V+T+Q+ VL +N R +S++ ++ ATE+P EL+R L SL
Sbjct: 183 IITFKNEVGQ---YDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 239
Query: 602 ACVKG--KHVLRKEPM---SKDIAEDDAFFFNDKFT-SKFVKVK-------IGTVVAQRE 648
+ VL EP KD E F N +F+ K KV+ IG + Q
Sbjct: 240 VAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRL--QLT 297
Query: 649 SEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKK 708
+E +E + + + R + + AI++I K R+ + + + TE+ + L++ FLP IK+
Sbjct: 298 TERXREEENEGIVQLRILRTQEAIIQIXKXRKKISNAQLQTELVEILKNXFLPQKKXIKE 357
Query: 709 RIESLIEREFLERDKVDRKLYRYLA 733
+IE LIE +++ RD+ D + Y A
Sbjct: 358 QIEWLIEHKYIRRDESDINTFIYXA 382
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue
Length = 92
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 75/88 (85%)
Query: 646 QRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVV 705
Q ES+PE +ETRQ+V++DRK +IEAAIVRIMK+R+ + HN +V EVT+QL++RFLP+PVV
Sbjct: 5 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVV 64
Query: 706 IKKRIESLIEREFLERDKVDRKLYRYLA 733
IKKRIE LIERE+L R DRK+Y Y+A
Sbjct: 65 IKKRIEGLIEREYLARTPEDRKVYTYVA 92
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a
Resolution
Length = 391
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 132/250 (52%), Gaps = 18/250 (7%)
Query: 133 VHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSF-- 190
V +L L+ W + + S I+ RLQD+ ++LV ER GE + L+ + + ++L S
Sbjct: 135 VRKLMLDTWNESIF--SNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPE 192
Query: 191 ----VYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDAR 246
+Y+D+FEK +L+ + FYR ++ +++ +Y+K A+ +L EE +R YL+ R
Sbjct: 193 DKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETR 252
Query: 247 SEAKITNVVEKEMIESHMNRLVHMENSGLV----NMLVDDKYEDLGRMYCLFRRVPSGL- 301
E N VE ++E +N LV ++ M+ ++ E L M+ L +VP+G+
Sbjct: 253 REC---NSVEA-LMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIE 308
Query: 302 ILIRDVMTSYIRDTGKQLVSDPERL-KDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNA 360
+++D+ I +V+ E + D + ++L L +++ K++ AF +D F A
Sbjct: 309 PMLKDLEEHIISAGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTA 368
Query: 361 LNSSFEYFIN 370
+ +++ +N
Sbjct: 369 RDKAYKAVVN 378
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of
Human Cul-4b
Length = 101
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 644 VAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNP 703
+ +E+ E T +RV +DR+ QI+AAIVRIMK R+ L HN +V+EV QL +F P
Sbjct: 8 IQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQL--KFPVKP 65
Query: 704 VVIKKRIESLIEREFLERDKVDRKLYRYLA 733
+KKRIESLI+R+++ERDK + Y Y+A
Sbjct: 66 ADLKKRIESLIDRDYMERDKENPNQYNYIA 95
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 77
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 52/74 (70%)
Query: 660 VEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFL 719
+EEDRK I+AAIVRIMK R+VL H ++ EV QL SRF P VIKK I+ LIE+E+L
Sbjct: 4 IEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYL 63
Query: 720 ERDKVDRKLYRYLA 733
ER ++ Y YLA
Sbjct: 64 ERVDGEKDTYSYLA 77
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 663 DRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERD 722
+R+ +EA IVRIMKA+R L H +V E Q RF ++K+ I+SLI++ +L+R
Sbjct: 7 ERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRG 66
Query: 723 KVDRKLYRYLA 733
D + Y YLA
Sbjct: 67 D-DGESYAYLA 76
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 652 ENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIE 711
E++ + + +R+ +EA IVRIMKA+R L H +V E Q RF ++K+ I+
Sbjct: 8 EDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAID 67
Query: 712 SLIEREFLERDKVDRKLYRYLA 733
SLI++ +L+R D + Y YLA
Sbjct: 68 SLIQKGYLQRGD-DGESYAYLA 88
>pdb|1KEI|A Chain A, Thermolysin (substrate-free)
pdb|1KR6|A Chain A, Thermolysin Complexed With Z-d-glutamic Acid
(benzyloxycarbonyl-d- Glutamic Acid)
pdb|1KRO|A Chain A, Thermolysin Complexed With Z-D-Threonine
(Benzyloxycarbonyl-D- Threonine)
pdb|1KS7|A Chain A, Thermolysin Complexed With Z-D-Aspartic Acid
(Benzyloxycarbonyl-D- Aspartic Acid)
pdb|1KTO|A Chain A, Thermolysin Complexed With Z-d-alanine
(benzyloxycarbonyl-d-alanine)
pdb|1Y3G|E Chain E, Crystal Structure Of A Silanediol Protease Inhibitor Bound
To Thermolysin
pdb|1KJO|A Chain A, Thermolysin Complexed With Z-L-Threonine
(Benzyloxycarbonyl-L- Threonine)
pdb|1KJP|A Chain A, Thermolysin Complexed With Z-L-Glutamic Acid
(Benzyloxycarbonyl-L- Glutamic Acid)
pdb|1KKK|A Chain A, Thermolysin Complexed With Z-L-Aspartic Acid
(Benzyloxycarbonyl-L- Aspartic Acid)
pdb|1KL6|A Chain A, Thermolysin Complexed With Z-l-alanine
(benzyloxycarbonyl-l-alanine)
pdb|3DNZ|A Chain A, Thermolysin By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DO0|A Chain A, Thermolysin By Classical Hanging Drop Method After High X-
Ray Dose On Esrf Id14-2 Beamline
pdb|3DO1|A Chain A, Thermolysin By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3DO2|A Chain A, Thermolysin By Lb Nanotemplate Method After High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3FB0|A Chain A, Metal Exchange In Thermolysin
pdb|3FBO|A Chain A, Metal Exchange In Thermolysin
pdb|3FGD|A Chain A, Drugscore Fp: Thermoylsin In Complex With Fragment.
pdb|3FLF|A Chain A, Thermolysin Inhibition
pdb|3FV4|A Chain A, Thermolysin Inhibition
pdb|3FVP|A Chain A, Thermolysin Inhibition
pdb|3FXP|A Chain A, Thermolysin Inhibition
pdb|3FXS|A Chain A, Metal Exchange In Thermolysin
pdb|2WHZ|A Chain A, Dipeptide Inhibitors Of Thermolysin
pdb|2WI0|A Chain A, Dipeptide Inhibitors Of Thermolysin
pdb|3LS7|A Chain A, Crystal Structure Of Thermolysin In Complex With Xenon
pdb|3MS3|A Chain A, Crystal Structure Of Thermolysin In Complex With Aniline
pdb|3MSA|A Chain A, Crystal Structure Of Thermolysin In Complex With
3-Bromophenol
pdb|3MSF|A Chain A, Crystal Structure Of Thermolysin In Complex With Urea
pdb|3MSN|A Chain A, Crystal Structure Of Thermolysin In Complex With
N-Methylurea
pdb|3N21|A Chain A, Crystal Structure Of Thermolysin In Complex With
S-1,2-Propandiol
pdb|3NN7|A Chain A, Crystal Structure Of Thermolysin In Complex With
2-Bromoacetate
pdb|3SSB|A Chain A, Structure Of Insect Metalloproteinase Inhibitor In Complex
With Thermolysin
pdb|3SSB|B Chain B, Structure Of Insect Metalloproteinase Inhibitor In Complex
With Thermolysin
pdb|3QGO|A Chain A, Structure Of Thermolysin In Complex With L-Phenylalanine
Methylester
pdb|3QH1|A Chain A, Structure Of Thermolysin In Complex With
N-Benzyloxycarbonyl-L- Aspartic Acid
pdb|3QH5|A Chain A, Structure Of Thermolysin In Complex With
N-Carbobenzyloxy-L-Aspartic Acid And L-Phenylalanine
Methyl Ester
pdb|3T73|A Chain A, Thermolysin In Complex With Ubtln22
pdb|3T74|A Chain A, Thermolysin In Complex With Ubtln27
pdb|3T87|A Chain A, Thermolysin In Complex With Ubtln28
pdb|3T8C|A Chain A, Thermolysin In Complex With Ubtln30
pdb|3T8D|A Chain A, Thermolysin In Complex With Ubtln31
pdb|3T8F|A Chain A, Thermolysin In Complex With Ubtln34
pdb|3T8G|A Chain A, Thermolysin In Complex With Ubtln26
pdb|3T8H|A Chain A, Thermolysin In Complex With Ubtln29
pdb|4H57|A Chain A, Thermolysin Inhibition
pdb|4D91|A Chain A, Thermolysin In Complex With Dmso And Acetate
pdb|4D9W|A Chain A, Thermolysin In Complex With Ubtln32
Length = 316
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 253 NVVEKEM---IESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMT 309
+VV E+ + + L++ SG +N + D + L Y + P I DV T
Sbjct: 138 DVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYA--NKNPDWEIG-EDVYT 194
Query: 310 SYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTF 357
I + +SDP + DP + +R +D INS N +
Sbjct: 195 PGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAY 242
>pdb|1TLP|E Chain E, Crystallographic Structural Analysis Of Phosphoramidates
As Inhibitors And Transition-State Analogs Of
Thermolysin
pdb|1TMN|E Chain E, Binding Of N-Carboxymethyl Dipeptide Inhibitors To
Thermolysin Determined By X-Ray Crystallography. A Novel
Class Of Transition- State Analogues For Zinc Peptidases
pdb|2TMN|E Chain E, Crystallographic Structural Analysis Of Phosphoramidates
As Inhibitors And Transition-State Analogs Of
Thermolysin
pdb|4TMN|E Chain E, Slow-And Fast-Binding Inhibitors Of Thermolysin Display
Different Modes Of Binding. Crystallographic Analysis Of
Extended Phosphonamidate Transition-State Analogues
pdb|5TMN|E Chain E, Slow-And Fast-Binding Inhibitors Of Thermolysin Display
Different Modes Of Binding. Crystallographic Analysis Of
Extended Phosphonamidate Transition-State Analogues
pdb|6TMN|E Chain E, Structures Of Two Thermolysin-inhibitor Complexes That
Differ By A Single Hydrogen Bond
pdb|8TLN|E Chain E, Structural Comparison Suggests That Thermolysin And
Related Neutral Proteases Undergo Hinge-Bending Motion
During Catalysis
pdb|1LNE|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNF|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNB|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LNC|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1LND|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
pdb|1QF0|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Phe-Tyr. Parameters For Zn-Bidentation
Of Mercaptoacyldipeptides In Metalloendopeptidase
pdb|1QF1|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-
Sulphanylheptanoyl)-Phe-Ala. Parameters For
Zn-Bidentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1QF2|A Chain A, Thermolysin (E.C.3.4.24.27) Complexed With (2-Sulphanyl-3-
Phenylpropanoyl)-Gly-(5-Phenylproline). Parameters For
Zn- Monodentation Of Mercaptoacyldipeptides In
Metalloendopeptidase
pdb|1TLI|A Chain A, Thermolysin (2% Isopropanol Soaked Crystals)
pdb|2TLI|A Chain A, Thermolysin (5% Isopropanol Soaked Crystals)
pdb|3TLI|A Chain A, Thermolysin (10% Isopropanol Soaked Crystals)
pdb|1TLX|A Chain A, Thermolysin (Native)
pdb|2TLX|A Chain A, Thermolysin (Native)
pdb|4TLI|A Chain A, Thermolysin (25% Isopropanol Soaked Crystals)
pdb|5TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|6TLI|A Chain A, Thermolysin (60% Isopropanol Soaked Crystals)
pdb|7TLI|A Chain A, Thermolysin (90% Isopropanol Soaked Crystals)
pdb|8TLI|A Chain A, Thermolysin (100% Isopropanol Soaked Crystals)
pdb|1FJ3|A Chain A, Thermolysin (50% Acetone Soaked)
pdb|1FJO|A Chain A, Thermolysin (60% Acetone Soaked Crystals)
pdb|1FJQ|A Chain A, Thermolysin (70% Acetone Soaked Crystals)
pdb|1FJT|A Chain A, Thermolysin (50% Acetonitrile Soaked Crystals)
pdb|1FJU|A Chain A, Thermolysin (80% Acetonitrile Soaked Crystals)
pdb|1FJV|A Chain A, Thermolysin (60% Acetonitrile Soaked Crystals)
pdb|1FJW|A Chain A, Thermolysin (50 Mm Phenol Soaked)
pdb|1L3F|E Chain E, Thermolysin In The Absence Of Substrate Has An Open
Conformation
pdb|1OS0|A Chain A, Thermolysin With An Alpha-Amino Phosphinic Inhibitor
pdb|1PE5|A Chain A, Thermolysin With Tricyclic Inhibitor
pdb|1PE7|A Chain A, Thermolysin With Bicyclic Inhibitor
pdb|1PE8|A Chain A, Thermolysin With Monocyclic Inhibitor
pdb|1ZDP|E Chain E, Crystal Structure Analysis Of Thermolysin Complexed With
The Inhibitor (S)-Thiorphan
pdb|2A7G|E Chain E, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Z|A Chain A, Anomalous Substructure Of Thermolysin
pdb|1HYT|A Chain A, Re-Determination And Refinement Of The Complex Of
Benzylsuccinic Acid With Thermolysin And Its Relation To
The Complex With Carboxypeptidase A
pdb|1THL|A Chain A, Thermolysin Complexed With A Novel Glutaramide Derivative,
N-(1-(2(r, S)-carboxy-4-phenylbutyl)
Cyclopentylcarbonyl)-(s)-tryptophan
pdb|4TLN|A Chain A, Binding Of Hydroxamic Acid Inhibitors To Crystalline
Thermolysin Suggests A Pentacoordinate Zinc Intermediate
In Catalysis
pdb|5TLN|A Chain A, Binding Of Hydroxamic Acid Inhibitors To Crystalline
Thermolysin Suggests A Pentacoordinate Zinc Intermediate
In Catalysis
pdb|7TLN|A Chain A, Structural Analysis Of The Inhibition Of Thermolysin By An
Active- Site-directed Irreversible Inhibitor
pdb|3EIM|A Chain A, Metal Exchange In Thermolysin
pdb|3F28|A Chain A, Thermolysin Inhibition
pdb|3F2P|A Chain A, Thermolysin Inhibition
pdb|3FCQ|A Chain A, Thermolysin Inhibition
pdb|3FOR|A Chain A, Thermolysin Complexed With Bnpa (2-Benzyl-3-Nitro
Propanoic Acid Amide)
pdb|3P7P|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure A
(0.1 Mgy)
pdb|3P7Q|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure B
(2.5 Mgy)
pdb|3P7R|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure C
(4.9 Mgy)
pdb|3P7S|E Chain E, Radiation Damage Study Of Thermolysin - 100k Structure D
(7.2 Mgy)
pdb|3P7T|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure A
(0.1 Mgy)
pdb|3P7U|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure B
(2.4 Mgy)
pdb|3P7V|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure C
(4.8 Mgy)
pdb|3P7W|E Chain E, Radiation Damage Study Of Thermolysin - 160k Structure D
(7.1 Mgy)
pdb|1GXW|A Chain A, The 2.2 A Resolution Structure Of Thermolysin Crystallized
In Presence Of Potassium Thiocyanate
pdb|3T2H|E Chain E, Tetragonal Thermolysin In The Presence Of Tmao
pdb|3T2I|E Chain E, Tetragonal Thermolysin In The Presence Of Sarcosine
pdb|3T2J|E Chain E, Tetragonal Thermolysin In The Presence Of Betaine
pdb|3TMN|E Chain E, The Binding Of L-Valyl-L-Tryptophan To Crystalline
Thermolysin Illustrates The Mode Of Interaction Of A
Product Of Peptide Hydrolysis
Length = 316
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 253 NVVEKEM---IESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMT 309
+VV E+ + + L++ SG +N + D + L Y + P I DV T
Sbjct: 138 DVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYA--NKNPDWEIG-EDVYT 194
Query: 310 SYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTF 357
I + +SDP + DP + +R +D INS N +
Sbjct: 195 PGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAY 242
>pdb|1LNA|E Chain E, A Structural Analysis Of Metal Substitutions In
Thermolysin
Length = 316
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 253 NVVEKEM---IESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMT 309
+VV E+ + + L++ SG +N + D + L Y + P I DV T
Sbjct: 138 DVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYA--NKNPDWEIG-EDVYT 194
Query: 310 SYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTF 357
I + +SDP + DP + +R +D INS N +
Sbjct: 195 PGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAY 242
>pdb|1Z9G|E Chain E, Crystal Structure Analysis Of Thermolysin Complexed With
The Inhibitor (R)-Retro-Thiorphan
Length = 316
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 253 NVVEKEM---IESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMT 309
+VV E+ + + L++ SG +N + D + L Y + P I DV T
Sbjct: 138 DVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYA--NKNPDWEIG-EDVYT 194
Query: 310 SYIRDTGKQLVSDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTF 357
I + +SDP + DP + +R +D INS N +
Sbjct: 195 PGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAY 242
>pdb|1WY6|A Chain A, Crystal Structure Of Hypothetical Protein [st1625p] From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 172
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 180 ITKMLMDLGSFV---YQDDFEKHFLEVSADFYRLESQEFI----ESCDCGDYLKKAERRL 232
I + LMD F+ Y D+ K LE++ + E FI ES DC R +
Sbjct: 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDC--------RYM 58
Query: 233 NEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGR 289
+ ++++ Y D + +VVE +I + +N V+ LV DK E++GR
Sbjct: 59 FQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGR 115
>pdb|2WPN|B Chain B, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 482
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 207 FYRLESQEFIESCDCGDYL---KKAERRLNEEMER--VSHYLDARSEAKITNVVEKEMIE 261
FY L +Q+F++ D ++ K++ RL++E+ + V Y++A +I + EM+
Sbjct: 108 FYHLSAQDFVQGPDTAPFVPRFPKSDLRLSKELNKAGVDQYIEALEVRRICH----EMVA 163
Query: 262 SHMNRLVHMEN 272
R+ H++
Sbjct: 164 LFGGRMPHVQG 174
>pdb|1ZTM|A Chain A, Structure Of The Uncleaved Paramyxovirus (hpiv3) Fusion
Protein
pdb|1ZTM|B Chain B, Structure Of The Uncleaved Paramyxovirus (hpiv3) Fusion
Protein
pdb|1ZTM|C Chain C, Structure Of The Uncleaved Paramyxovirus (hpiv3) Fusion
Protein
Length = 490
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 24/172 (13%)
Query: 66 EKLYSGLVTTMTF------HLTEICKSIEAAQGGLFLEELNRKWADHNKALQ-------- 111
++ + G++ T+ +T +EA Q +E+L D NKA+Q
Sbjct: 90 KRFFGGVIGTIALGVATSAQITAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGN 149
Query: 112 ---MIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERS 168
I+ + Y+++ +PS + GL L + H S++ D + L ++
Sbjct: 150 LIVAIKSVQDYVNKEIVPSIARLGCEAAGLQLGIALTQHYSELTNIFGDNIGSLQEKGIK 209
Query: 169 GEVINRGLMRNITKMLM-------DLGSFVYQDDFEKHFLEVSADFYRLESQ 213
+ I NIT++ D+ ++ + + ++V + Y + Q
Sbjct: 210 LQGIASLYRTNITEIFTTSTVDKYDIYDLLFTESIKVRVIDVDLNDYSITLQ 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,868,638
Number of Sequences: 62578
Number of extensions: 873589
Number of successful extensions: 2571
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2457
Number of HSP's gapped (non-prelim): 45
length of query: 733
length of database: 14,973,337
effective HSP length: 106
effective length of query: 627
effective length of database: 8,340,069
effective search space: 5229223263
effective search space used: 5229223263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)