Query 004725
Match_columns 733
No_of_seqs 206 out of 1061
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 100.0 2E-136 6E-141 1201.6 73.2 717 4-733 38-759 (759)
2 1ldj_A Cullin homolog 1, CUL-1 100.0 2E-133 7E-138 1175.9 62.0 698 25-733 1-760 (760)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 8.1E-79 2.8E-83 657.6 33.9 359 372-733 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 1.4E-70 4.8E-75 600.7 40.8 381 5-387 12-396 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 3.2E-65 1.1E-69 551.7 31.9 355 17-371 5-363 (364)
6 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 4.3E-63 1.5E-67 533.1 38.9 349 17-373 2-353 (354)
7 2wzk_A Cullin-5, CUL-5; UBL co 100.0 3E-59 1E-63 509.4 34.4 346 17-371 10-379 (391)
8 3o2p_E Cell division control p 99.9 2.3E-26 7.9E-31 189.8 5.7 82 651-733 7-88 (88)
9 1iuy_A Cullin-3 homologue; win 99.9 4.5E-27 1.5E-31 196.4 0.5 88 646-733 5-92 (92)
10 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 1.6E-26 5.6E-31 186.2 3.1 75 659-733 3-77 (77)
11 2do7_A Cullin-4B, CUL-4B; heli 99.9 2.7E-26 9.4E-31 194.2 2.8 93 638-733 3-95 (101)
12 2dk5_A DNA-directed RNA polyme 90.6 0.45 1.5E-05 39.3 5.9 53 557-612 14-68 (91)
13 3cuo_A Uncharacterized HTH-typ 89.0 0.55 1.9E-05 38.9 5.5 49 562-613 23-71 (99)
14 2jt1_A PEFI protein; solution 88.8 0.48 1.6E-05 37.7 4.6 48 567-617 8-61 (77)
15 3lmm_A Uncharacterized protein 88.6 0.25 8.4E-06 55.7 3.8 137 562-727 429-568 (583)
16 1sfx_A Conserved hypothetical 87.8 0.52 1.8E-05 39.6 4.7 50 561-613 18-67 (109)
17 3jth_A Transcription activator 87.6 1 3.4E-05 37.4 6.2 49 562-614 22-70 (98)
18 2htj_A P fimbrial regulatory p 87.5 1.3 4.5E-05 35.3 6.6 44 567-613 4-47 (81)
19 1y0u_A Arsenical resistance op 87.2 1.1 3.8E-05 37.1 6.2 56 562-630 30-85 (96)
20 1qgp_A Protein (double strande 87.0 0.8 2.7E-05 36.4 4.9 47 565-614 16-65 (77)
21 3g3z_A NMB1585, transcriptiona 86.7 0.8 2.7E-05 40.9 5.4 51 561-614 29-79 (145)
22 3tgn_A ADC operon repressor AD 86.6 0.94 3.2E-05 40.4 5.9 52 559-614 34-85 (146)
23 1xn7_A Hypothetical protein YH 86.4 0.76 2.6E-05 36.7 4.4 43 568-613 7-49 (78)
24 3hsr_A HTH-type transcriptiona 86.1 0.67 2.3E-05 41.3 4.5 51 561-614 34-84 (140)
25 3ech_A MEXR, multidrug resista 86.0 0.67 2.3E-05 41.3 4.5 52 560-614 34-85 (142)
26 3r0a_A Putative transcriptiona 85.7 0.79 2.7E-05 40.1 4.7 51 560-613 23-75 (123)
27 3nrv_A Putative transcriptiona 85.1 1 3.5E-05 40.3 5.3 52 560-614 37-88 (148)
28 2fu4_A Ferric uptake regulatio 85.0 1.1 3.7E-05 35.9 4.9 52 560-614 14-72 (83)
29 2d1h_A ST1889, 109AA long hypo 84.9 1.2 4.1E-05 37.3 5.4 51 561-614 19-70 (109)
30 3cdh_A Transcriptional regulat 84.9 1.4 4.8E-05 39.8 6.2 51 561-614 41-91 (155)
31 2fbh_A Transcriptional regulat 84.6 1.1 3.9E-05 39.7 5.4 51 561-614 35-86 (146)
32 3k0l_A Repressor protein; heli 84.6 1 3.6E-05 41.1 5.2 51 561-614 44-94 (162)
33 2k02_A Ferrous iron transport 84.6 0.87 3E-05 37.1 4.0 43 568-613 7-49 (87)
34 1qbj_A Protein (double-strande 84.5 1.8 6.1E-05 34.8 5.8 47 565-614 12-61 (81)
35 3bpv_A Transcriptional regulat 84.5 0.91 3.1E-05 40.0 4.6 50 561-613 27-76 (138)
36 3oop_A LIN2960 protein; protei 84.2 0.74 2.5E-05 41.0 3.9 51 561-614 35-85 (143)
37 2gxg_A 146AA long hypothetical 84.2 1.5 5.2E-05 39.0 6.0 49 561-613 35-83 (146)
38 4hbl_A Transcriptional regulat 83.9 0.94 3.2E-05 40.8 4.5 51 561-614 39-89 (149)
39 3pqk_A Biofilm growth-associat 83.9 2.7 9.3E-05 35.0 7.1 61 562-630 22-82 (102)
40 2frh_A SARA, staphylococcal ac 83.8 0.86 2.9E-05 40.0 4.1 51 561-614 35-87 (127)
41 1wi9_A Protein C20ORF116 homol 83.8 0.37 1.3E-05 37.3 1.4 55 671-733 11-65 (72)
42 2vn2_A DNAD, chromosome replic 83.5 1.3 4.6E-05 38.9 5.2 53 559-614 28-85 (128)
43 2qww_A Transcriptional regulat 83.5 1.3 4.3E-05 40.0 5.2 49 561-612 39-87 (154)
44 1u2w_A CADC repressor, cadmium 83.4 1.6 5.6E-05 37.9 5.7 50 562-614 41-90 (122)
45 3bja_A Transcriptional regulat 83.4 0.91 3.1E-05 40.0 4.1 50 561-613 31-80 (139)
46 3eco_A MEPR; mutlidrug efflux 83.2 1.1 3.9E-05 39.5 4.7 51 561-614 29-81 (139)
47 3bj6_A Transcriptional regulat 83.1 1.4 4.6E-05 39.6 5.3 51 561-614 38-88 (152)
48 1jgs_A Multiple antibiotic res 83.1 1.1 3.8E-05 39.5 4.6 50 561-613 32-81 (138)
49 1p6r_A Penicillinase repressor 83.1 1.1 3.9E-05 35.7 4.2 51 561-614 7-61 (82)
50 3bro_A Transcriptional regulat 82.9 1.5 5.1E-05 38.7 5.4 51 561-614 32-84 (141)
51 1tbx_A ORF F-93, hypothetical 82.8 1.3 4.4E-05 36.8 4.6 50 561-613 6-59 (99)
52 1xmk_A Double-stranded RNA-spe 82.2 2.1 7.4E-05 34.1 5.3 49 563-614 11-60 (79)
53 3bdd_A Regulatory protein MARR 81.9 1.4 4.7E-05 39.0 4.7 50 561-613 29-78 (142)
54 2fa5_A Transcriptional regulat 81.8 1.6 5.6E-05 39.6 5.3 50 561-613 47-96 (162)
55 1oyi_A Double-stranded RNA-bin 81.7 1.8 6.2E-05 34.7 4.7 45 566-614 20-64 (82)
56 2bv6_A MGRA, HTH-type transcri 81.7 1.1 3.7E-05 39.8 3.9 50 561-613 35-84 (142)
57 2v79_A DNA replication protein 81.5 1.3 4.3E-05 39.6 4.2 52 558-612 27-83 (135)
58 2pex_A Transcriptional regulat 81.3 1.5 5E-05 39.5 4.8 50 561-613 45-94 (153)
59 2heo_A Z-DNA binding protein 1 81.2 1.4 4.7E-05 34.0 3.8 46 564-612 11-57 (67)
60 2hr3_A Probable transcriptiona 81.2 1.5 5.3E-05 39.0 4.8 51 561-614 33-84 (147)
61 3e6m_A MARR family transcripti 81.2 1.2 4E-05 40.7 4.1 51 561-614 51-101 (161)
62 2e1c_A Putative HTH-type trans 80.9 1.6 5.3E-05 40.7 4.8 66 540-612 8-73 (171)
63 2nnn_A Probable transcriptiona 80.9 1.6 5.5E-05 38.4 4.8 50 561-613 36-85 (140)
64 3deu_A Transcriptional regulat 80.8 1.6 5.3E-05 40.2 4.8 51 561-614 51-102 (166)
65 2nyx_A Probable transcriptiona 80.6 1.3 4.4E-05 40.8 4.2 50 561-613 43-92 (168)
66 1lj9_A Transcriptional regulat 80.6 1.3 4.4E-05 39.4 4.1 50 561-613 27-76 (144)
67 2rdp_A Putative transcriptiona 80.3 1.6 5.3E-05 39.1 4.5 50 561-613 40-89 (150)
68 3cjn_A Transcriptional regulat 80.1 1.6 5.5E-05 39.7 4.6 50 561-613 50-99 (162)
69 2eth_A Transcriptional regulat 80.0 1.7 5.8E-05 39.2 4.7 50 561-613 42-91 (154)
70 3s2w_A Transcriptional regulat 79.9 1.1 3.9E-05 40.7 3.5 51 561-614 48-98 (159)
71 1ku9_A Hypothetical protein MJ 79.5 2.5 8.7E-05 37.5 5.7 51 561-614 24-75 (152)
72 2a61_A Transcriptional regulat 79.5 1.8 6.1E-05 38.4 4.7 50 561-613 31-80 (145)
73 1bja_A Transcription regulator 79.4 2.2 7.5E-05 35.3 4.6 50 559-611 12-62 (95)
74 3jw4_A Transcriptional regulat 79.1 1.1 3.6E-05 40.3 2.9 51 561-614 39-91 (148)
75 1s3j_A YUSO protein; structura 79.1 1.4 4.6E-05 39.8 3.7 51 561-614 35-85 (155)
76 2fbi_A Probable transcriptiona 79.1 1.4 4.9E-05 38.9 3.8 50 561-613 34-83 (142)
77 2oqg_A Possible transcriptiona 78.8 1.8 6.2E-05 36.8 4.2 48 562-613 20-67 (114)
78 1z91_A Organic hydroperoxide r 78.7 1.5 5.2E-05 39.1 3.9 51 561-614 38-88 (147)
79 1ub9_A Hypothetical protein PH 78.7 1.6 5.5E-05 36.0 3.8 48 562-612 15-62 (100)
80 1r1u_A CZRA, repressor protein 78.6 2.3 7.8E-05 35.9 4.8 48 562-613 25-72 (106)
81 3f3x_A Transcriptional regulat 77.9 1.6 5.6E-05 38.8 3.8 50 560-613 34-83 (144)
82 3boq_A Transcriptional regulat 77.9 1.7 5.9E-05 39.4 4.1 51 561-614 45-96 (160)
83 3fm5_A Transcriptional regulat 77.7 2.2 7.5E-05 38.2 4.7 51 561-614 37-88 (150)
84 2pn6_A ST1022, 150AA long hypo 77.6 3.1 0.0001 37.5 5.6 48 562-612 2-49 (150)
85 4aik_A Transcriptional regulat 77.2 3.7 0.00013 37.1 6.1 51 561-614 29-80 (151)
86 3kp7_A Transcriptional regulat 77.1 1.8 6.2E-05 38.8 4.0 48 561-612 36-83 (151)
87 3nqo_A MARR-family transcripti 77.1 2.1 7.2E-05 40.3 4.5 51 561-614 39-91 (189)
88 3lwf_A LIN1550 protein, putati 77.1 6 0.0002 36.2 7.4 58 565-630 31-89 (159)
89 2w25_A Probable transcriptiona 77.0 2.9 0.0001 37.6 5.3 49 561-612 5-53 (150)
90 1p6r_A Penicillinase repressor 76.9 1.5 5.1E-05 35.0 2.9 58 670-732 12-69 (82)
91 4b8x_A SCO5413, possible MARR- 76.7 1.9 6.6E-05 38.8 3.9 51 561-614 33-85 (147)
92 3t8r_A Staphylococcus aureus C 75.5 6.1 0.00021 35.4 6.9 57 565-629 15-72 (143)
93 2kko_A Possible transcriptiona 75.5 1.8 6.3E-05 36.7 3.3 46 564-613 26-71 (108)
94 3k69_A Putative transcription 75.3 4.4 0.00015 37.2 6.0 47 564-613 15-61 (162)
95 2fxa_A Protease production reg 75.2 2.1 7.3E-05 41.0 4.1 51 561-614 46-96 (207)
96 2cfx_A HTH-type transcriptiona 75.0 3.6 0.00012 36.8 5.3 49 561-612 3-51 (144)
97 2xub_A DNA-directed RNA polyme 74.9 3 0.0001 46.4 5.7 129 574-724 30-162 (534)
98 1sfu_A 34L protein; protein/Z- 74.8 3.2 0.00011 32.5 4.1 43 569-614 21-63 (75)
99 1i1g_A Transcriptional regulat 74.1 2.8 9.6E-05 37.2 4.3 49 562-613 3-51 (141)
100 2jsc_A Transcriptional regulat 73.5 4 0.00014 35.1 5.0 49 562-614 20-68 (118)
101 2y75_A HTH-type transcriptiona 73.4 8.1 0.00028 33.7 7.1 48 575-630 24-71 (129)
102 2wte_A CSA3; antiviral protein 73.3 3 0.0001 41.2 4.6 50 561-613 150-199 (244)
103 2dbb_A Putative HTH-type trans 72.9 4.1 0.00014 36.7 5.2 49 561-612 7-55 (151)
104 2cg4_A Regulatory protein ASNC 72.9 4 0.00014 36.8 5.1 49 561-612 6-54 (152)
105 2yu3_A DNA-directed RNA polyme 72.7 4.2 0.00014 33.7 4.6 51 560-613 34-86 (95)
106 1sd4_A Penicillinase repressor 72.4 2.6 9E-05 36.5 3.6 51 560-613 7-61 (126)
107 2ia0_A Putative HTH-type trans 72.0 4.3 0.00015 37.6 5.1 51 559-612 13-63 (171)
108 2obp_A Putative DNA-binding pr 71.6 4.6 0.00016 33.5 4.6 49 561-612 14-68 (96)
109 1bby_A RAP30; average structur 71.5 8.4 0.00029 29.7 5.7 57 565-632 10-66 (69)
110 2g9w_A Conserved hypothetical 71.4 5 0.00017 35.6 5.3 50 561-613 7-61 (138)
111 2xrn_A HTH-type transcriptiona 71.4 5 0.00017 39.4 5.8 56 566-630 9-65 (241)
112 2cyy_A Putative HTH-type trans 71.4 4.2 0.00014 36.7 4.8 49 561-612 5-53 (151)
113 3u2r_A Regulatory protein MARR 70.9 2.5 8.5E-05 38.8 3.3 51 561-614 44-96 (168)
114 1ylf_A RRF2 family protein; st 70.6 7 0.00024 35.2 6.1 58 564-630 17-74 (149)
115 2p5v_A Transcriptional regulat 69.9 5.4 0.00019 36.4 5.3 49 561-612 8-56 (162)
116 3r4k_A Transcriptional regulat 69.8 3.6 0.00012 41.0 4.4 57 566-631 9-66 (260)
117 1okr_A MECI, methicillin resis 69.6 2.4 8.4E-05 36.5 2.7 51 560-613 7-61 (123)
118 3f6o_A Probable transcriptiona 69.1 4.5 0.00015 34.7 4.3 49 562-614 17-65 (118)
119 2lkp_A Transcriptional regulat 68.5 5.1 0.00017 34.3 4.6 47 562-612 31-77 (119)
120 4fx0_A Probable transcriptiona 68.0 6.4 0.00022 35.3 5.3 48 561-611 31-83 (148)
121 1r1t_A Transcriptional repress 67.9 7.5 0.00026 33.7 5.5 47 563-613 46-92 (122)
122 2pg4_A Uncharacterized protein 67.8 4.8 0.00017 32.9 4.1 45 564-611 16-62 (95)
123 3mq0_A Transcriptional repress 67.7 4.8 0.00016 40.5 4.8 46 566-614 33-79 (275)
124 2k4b_A Transcriptional regulat 67.3 1.5 5.2E-05 36.7 0.8 52 560-614 32-87 (99)
125 2k4b_A Transcriptional regulat 66.5 3.6 0.00012 34.4 3.0 60 669-733 37-96 (99)
126 1xn7_A Hypothetical protein YH 66.0 3 0.0001 33.2 2.2 44 671-722 6-49 (78)
127 2fu4_A Ferric uptake regulatio 65.7 6.3 0.00021 31.3 4.2 59 670-731 20-80 (83)
128 1q1h_A TFE, transcription fact 65.4 6.7 0.00023 33.0 4.6 43 568-613 23-66 (110)
129 1mkm_A ICLR transcriptional re 64.1 9.8 0.00033 37.5 6.2 55 566-630 11-66 (249)
130 3i4p_A Transcriptional regulat 63.6 9.6 0.00033 34.7 5.7 46 564-612 4-49 (162)
131 2v79_A DNA replication protein 63.4 5.9 0.0002 35.1 3.9 28 694-721 56-83 (135)
132 1p4x_A Staphylococcal accessor 63.2 7.1 0.00024 38.6 4.9 51 561-614 156-208 (250)
133 1xd7_A YWNA; structural genomi 63.0 9.7 0.00033 34.0 5.5 44 565-613 13-56 (145)
134 3b73_A PHIH1 repressor-like pr 62.5 8.8 0.0003 32.7 4.7 50 561-613 11-62 (111)
135 1p4x_A Staphylococcal accessor 62.3 5.8 0.0002 39.3 4.1 52 560-614 31-84 (250)
136 1fse_A GERE; helix-turn-helix 60.9 13 0.00046 28.3 5.3 41 561-603 12-52 (74)
137 2p5k_A Arginine repressor; DNA 60.6 11 0.00038 27.9 4.6 37 565-601 7-48 (64)
138 2fbk_A Transcriptional regulat 60.0 4.2 0.00014 37.8 2.5 51 561-614 67-120 (181)
139 1sd4_A Penicillinase repressor 60.0 3.4 0.00012 35.8 1.7 59 669-732 12-70 (126)
140 1tbx_A ORF F-93, hypothetical 59.7 6.3 0.00022 32.4 3.3 55 671-729 12-66 (99)
141 1je8_A Nitrate/nitrite respons 59.2 14 0.00048 29.3 5.2 41 561-603 22-62 (82)
142 2hzt_A Putative HTH-type trans 58.5 14 0.00049 30.9 5.4 46 564-613 15-61 (107)
143 2x4h_A Hypothetical protein SS 58.2 13 0.00043 32.6 5.3 51 560-613 10-64 (139)
144 2o0y_A Transcriptional regulat 58.0 10 0.00035 37.6 5.1 54 567-630 27-81 (260)
145 2qvo_A Uncharacterized protein 57.9 6.6 0.00022 32.2 3.1 47 561-610 10-60 (95)
146 1on2_A Transcriptional regulat 57.9 8.2 0.00028 34.1 4.0 40 571-613 16-55 (142)
147 2g7u_A Transcriptional regulat 57.1 13 0.00045 36.7 5.7 55 566-631 17-72 (257)
148 1hsj_A Fusion protein consisti 57.1 7.6 0.00026 42.3 4.4 52 560-614 401-454 (487)
149 3f6v_A Possible transcriptiona 57.0 8.1 0.00028 34.9 3.8 48 562-613 57-104 (151)
150 3df8_A Possible HXLR family tr 56.9 15 0.00051 31.1 5.3 48 562-613 26-76 (111)
151 2k02_A Ferrous iron transport 56.2 9.3 0.00032 31.0 3.6 45 671-723 6-50 (87)
152 2ia2_A Putative transcriptiona 56.2 12 0.0004 37.3 5.2 55 566-631 24-79 (265)
153 1uly_A Hypothetical protein PH 56.1 16 0.00055 34.4 5.9 49 561-613 18-66 (192)
154 3ulq_B Transcriptional regulat 54.9 17 0.00059 29.4 5.1 44 558-603 27-70 (90)
155 2p4w_A Transcriptional regulat 54.8 13 0.00045 35.3 5.1 65 562-630 14-79 (202)
156 1z7u_A Hypothetical protein EF 54.4 13 0.00043 31.5 4.4 48 562-613 21-69 (112)
157 4a5n_A Uncharacterized HTH-typ 54.1 18 0.0006 31.8 5.4 46 564-613 27-73 (131)
158 1x3u_A Transcriptional regulat 53.9 19 0.00064 27.9 5.1 41 561-603 17-57 (79)
159 3c57_A Two component transcrip 52.9 16 0.00055 29.9 4.7 41 561-603 28-68 (95)
160 1r7j_A Conserved hypothetical 50.2 32 0.0011 28.1 6.1 43 566-613 11-53 (95)
161 3r0a_A Putative transcriptiona 50.1 9.6 0.00033 33.0 3.0 48 667-722 26-75 (123)
162 2f2e_A PA1607; transcription f 49.9 23 0.00078 31.6 5.6 47 564-614 25-71 (146)
163 2g9w_A Conserved hypothetical 49.3 7.2 0.00024 34.5 2.1 59 669-732 11-70 (138)
164 1yyv_A Putative transcriptiona 47.8 21 0.00072 31.2 4.9 48 562-613 34-82 (131)
165 1okr_A MECI, methicillin resis 47.1 8.3 0.00029 33.0 2.1 56 672-732 15-70 (123)
166 2fsw_A PG_0823 protein; alpha- 46.9 23 0.00079 29.5 4.8 45 565-613 27-72 (107)
167 2vn2_A DNAD, chromosome replic 46.3 11 0.00039 32.8 2.9 27 697-723 59-85 (128)
168 2l02_A Uncharacterized protein 46.1 34 0.0012 27.2 5.1 36 568-603 13-48 (82)
169 1z6r_A MLC protein; transcript 45.9 29 0.001 36.6 6.7 65 565-632 18-85 (406)
170 2zkz_A Transcriptional repress 45.7 16 0.00056 30.0 3.6 43 562-604 26-68 (99)
171 3f8b_A Transcriptional regulat 45.4 24 0.00083 30.0 4.8 58 664-722 9-66 (116)
172 2xvc_A ESCRT-III, SSO0910; cel 45.3 20 0.00068 26.3 3.4 36 573-611 21-56 (59)
173 2jpc_A SSRB; DNA binding prote 44.1 22 0.00075 25.9 3.8 36 566-603 4-39 (61)
174 2p7v_B Sigma-70, RNA polymeras 44.1 36 0.0012 25.5 5.2 42 561-602 6-50 (68)
175 1dp3_A TRAM protein; helix-loo 43.8 8.2 0.00028 27.9 1.2 45 153-197 9-54 (55)
176 2rnj_A Response regulator prot 43.0 18 0.0006 29.2 3.4 41 561-603 30-70 (91)
177 1tc3_C Protein (TC3 transposas 42.9 36 0.0012 23.0 4.7 34 566-601 12-45 (51)
178 2fe3_A Peroxide operon regulat 42.9 26 0.00088 31.2 4.8 65 559-629 18-88 (145)
179 1mzb_A Ferric uptake regulatio 42.6 30 0.001 30.3 5.1 64 559-628 14-84 (136)
180 2lnb_A Z-DNA-binding protein 1 41.1 23 0.00079 27.7 3.4 41 565-605 21-62 (80)
181 4a0z_A Transcription factor FA 40.9 21 0.00072 33.5 3.9 42 564-605 13-54 (190)
182 2x48_A CAG38821; archeal virus 40.4 42 0.0014 23.7 4.8 24 576-599 30-53 (55)
183 2qlz_A Transcription factor PF 39.8 25 0.00084 34.2 4.4 46 564-613 166-211 (232)
184 1qbj_A Protein (double-strande 39.8 19 0.00065 28.7 2.9 53 669-729 12-67 (81)
185 3t72_q RNA polymerase sigma fa 39.7 35 0.0012 28.2 4.7 38 562-599 21-61 (99)
186 3dp7_A SAM-dependent methyltra 39.7 32 0.0011 35.7 5.6 48 571-629 43-91 (363)
187 3omy_A Protein TRAM; DNA bindi 39.3 17 0.00058 26.0 2.2 41 152-193 9-49 (52)
188 1tty_A Sigma-A, RNA polymerase 39.0 39 0.0013 26.9 4.8 40 562-601 20-62 (87)
189 1v4r_A Transcriptional repress 38.2 14 0.00046 30.7 2.0 40 572-614 29-69 (102)
190 1p4w_A RCSB; solution structur 38.1 36 0.0012 28.1 4.5 41 561-603 35-75 (99)
191 2xig_A Ferric uptake regulatio 38.1 37 0.0013 30.3 5.1 52 559-613 23-80 (150)
192 1bia_A BIRA bifunctional prote 37.9 44 0.0015 34.1 6.2 43 563-605 5-47 (321)
193 3cuq_B Vacuolar protein-sortin 37.8 94 0.0032 29.7 8.1 50 562-614 153-202 (218)
194 1ku3_A Sigma factor SIGA; heli 37.8 42 0.0014 25.6 4.7 39 562-600 12-53 (73)
195 2jt1_A PEFI protein; solution 36.9 16 0.00054 28.8 2.0 56 664-727 5-62 (77)
196 1x19_A CRTF-related protein; m 36.2 45 0.0015 34.4 6.1 43 576-629 63-105 (359)
197 3k2z_A LEXA repressor; winged 36.2 42 0.0014 31.4 5.4 51 561-614 3-58 (196)
198 2r3s_A Uncharacterized protein 35.9 35 0.0012 34.7 5.2 43 576-629 38-80 (335)
199 1qgp_A Protein (double strande 35.9 18 0.0006 28.5 2.1 52 670-729 17-71 (77)
200 2htj_A P fimbrial regulatory p 35.6 25 0.00087 27.5 3.1 44 671-722 4-47 (81)
201 3hrs_A Metalloregulator SCAR; 35.5 37 0.0013 32.4 4.8 44 568-614 11-54 (214)
202 2b0l_A GTP-sensing transcripti 35.3 20 0.00068 29.9 2.5 43 569-614 34-77 (102)
203 2w57_A Ferric uptake regulatio 35.1 37 0.0013 30.3 4.5 52 559-613 13-71 (150)
204 2h09_A Transcriptional regulat 35.1 37 0.0013 30.1 4.6 40 571-613 48-87 (155)
205 2o03_A Probable zinc uptake re 34.7 48 0.0017 28.7 5.1 51 561-614 9-65 (131)
206 3to7_A Histone acetyltransfera 34.3 30 0.001 34.1 3.9 38 564-601 194-232 (276)
207 2ip2_A Probable phenazine-spec 34.2 49 0.0017 33.6 5.9 43 576-628 40-82 (334)
208 2qlz_A Transcription factor PF 33.7 19 0.00063 35.1 2.4 65 562-630 11-77 (232)
209 1tw3_A COMT, carminomycin 4-O- 33.1 41 0.0014 34.6 5.2 45 575-629 50-94 (360)
210 1sfx_A Conserved hypothetical 32.7 22 0.00076 29.0 2.5 49 667-723 20-68 (109)
211 3i53_A O-methyltransferase; CO 32.2 61 0.0021 32.9 6.2 35 576-613 37-71 (332)
212 2l01_A Uncharacterized protein 32.1 43 0.0015 26.3 3.6 37 567-603 14-51 (77)
213 1j5y_A Transcriptional regulat 32.0 45 0.0015 30.9 4.8 41 565-605 23-64 (187)
214 2o8x_A Probable RNA polymerase 31.9 64 0.0022 23.8 4.9 39 561-601 16-55 (70)
215 1oks_A RNA polymerase alpha su 31.8 51 0.0017 23.5 3.6 44 426-469 5-48 (56)
216 2hoe_A N-acetylglucosamine kin 31.4 33 0.0011 35.9 4.1 55 575-632 31-87 (380)
217 3i4p_A Transcriptional regulat 31.1 43 0.0015 30.3 4.3 47 668-722 4-50 (162)
218 3u1d_A Uncharacterized protein 31.1 1.2E+02 0.0041 27.2 7.0 45 566-613 32-79 (151)
219 3mcz_A O-methyltransferase; ad 30.9 51 0.0017 33.8 5.4 34 577-613 56-89 (352)
220 3hug_A RNA polymerase sigma fa 30.9 61 0.0021 25.9 4.8 38 562-601 39-77 (92)
221 1xma_A Predicted transcription 30.6 41 0.0014 29.9 4.0 57 665-722 39-95 (145)
222 3eyy_A Putative iron uptake re 30.3 25 0.00086 31.3 2.5 57 672-731 24-80 (145)
223 1qzz_A RDMB, aclacinomycin-10- 30.0 52 0.0018 34.0 5.3 36 575-613 47-82 (374)
224 1z05_A Transcriptional regulat 30.0 33 0.0011 36.6 3.9 63 566-631 42-107 (429)
225 3i71_A Ethanolamine utilizatio 29.7 1.6E+02 0.0056 21.4 6.3 39 572-613 13-51 (68)
226 3eyy_A Putative iron uptake re 29.6 42 0.0014 29.8 3.9 52 559-613 15-71 (145)
227 2dk5_A DNA-directed RNA polyme 29.6 40 0.0014 27.4 3.4 42 672-721 25-68 (91)
228 1ufm_A COP9 complex subunit 4; 28.5 77 0.0026 25.2 4.8 42 564-605 17-58 (84)
229 2ozu_A Histone acetyltransfera 28.2 39 0.0013 33.5 3.5 28 574-601 211-238 (284)
230 3cuo_A Uncharacterized HTH-typ 28.1 89 0.0031 24.9 5.5 53 667-727 24-76 (99)
231 3lst_A CALO1 methyltransferase 27.1 57 0.002 33.4 5.0 34 576-612 54-87 (348)
232 3tqn_A Transcriptional regulat 26.7 58 0.002 27.4 4.1 38 574-614 29-67 (113)
233 2ou2_A Histone acetyltransfera 25.5 51 0.0018 32.6 3.8 26 577-602 212-237 (280)
234 1mzb_A Ferric uptake regulatio 25.4 70 0.0024 27.8 4.5 52 670-724 21-74 (136)
235 2qww_A Transcriptional regulat 25.2 47 0.0016 29.1 3.4 45 669-721 43-87 (154)
236 3kp7_A Transcriptional regulat 25.2 34 0.0012 30.1 2.4 49 669-726 40-92 (151)
237 3by6_A Predicted transcription 24.7 52 0.0018 28.3 3.5 38 574-614 31-69 (126)
238 2ek5_A Predicted transcription 24.6 68 0.0023 27.8 4.2 38 574-614 24-62 (129)
239 2pq8_A Probable histone acetyl 24.3 39 0.0013 33.4 2.7 38 564-601 194-232 (278)
240 3iuo_A ATP-dependent DNA helic 24.2 1.1E+02 0.0037 26.2 5.4 41 563-605 20-60 (122)
241 3neu_A LIN1836 protein; struct 24.0 1E+02 0.0034 26.4 5.2 37 575-614 34-71 (125)
242 3mwm_A ZUR, putative metal upt 23.9 58 0.002 28.6 3.7 65 559-629 10-80 (139)
243 3mwm_A ZUR, putative metal upt 23.7 83 0.0028 27.6 4.7 58 671-731 18-76 (139)
244 3gwz_A MMCR; methyltransferase 23.7 55 0.0019 34.0 4.0 36 575-613 69-104 (369)
245 2xub_A DNA-directed RNA polyme 23.6 99 0.0034 34.0 6.3 107 588-723 302-408 (534)
246 2p5k_A Arginine repressor; DNA 22.7 76 0.0026 23.0 3.7 51 674-731 12-62 (64)
247 2w48_A Sorbitol operon regulat 22.7 84 0.0029 31.8 5.2 37 572-611 16-52 (315)
248 2frh_A SARA, staphylococcal ac 22.7 53 0.0018 28.1 3.1 24 699-722 63-86 (127)
249 3tgn_A ADC operon repressor AD 22.7 70 0.0024 27.6 4.0 43 672-723 43-85 (146)
250 2fe3_A Peroxide operon regulat 22.5 70 0.0024 28.2 4.0 60 669-731 24-84 (145)
251 3mzy_A RNA polymerase sigma-H 22.3 77 0.0026 27.8 4.3 37 562-600 111-147 (164)
252 1xsv_A Hypothetical UPF0122 pr 22.3 1.1E+02 0.0038 25.6 5.0 39 562-601 27-65 (113)
253 2o03_A Probable zinc uptake re 21.9 1.2E+02 0.0042 26.0 5.4 64 661-731 10-73 (131)
254 1jko_C HIN recombinase, DNA-in 21.6 95 0.0033 21.0 3.8 30 568-599 14-43 (52)
255 3jth_A Transcription activator 21.6 1.7E+02 0.0057 23.3 5.9 52 669-729 25-76 (98)
256 3on0_A Protein TRAM; DNA bindi 21.3 46 0.0016 28.5 2.2 41 152-193 9-49 (127)
257 2xig_A Ferric uptake regulatio 21.3 73 0.0025 28.3 3.8 58 671-731 31-89 (150)
258 3chm_A COP9 signalosome comple 20.7 77 0.0026 29.0 3.9 42 564-605 96-139 (169)
259 3clo_A Transcriptional regulat 20.7 77 0.0026 31.0 4.2 41 560-602 197-237 (258)
260 1s7o_A Hypothetical UPF0122 pr 20.0 1E+02 0.0036 25.9 4.4 40 561-602 23-63 (113)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.9e-136 Score=1201.58 Aligned_cols=717 Identities=40% Similarity=0.695 Sum_probs=679.1
Q ss_pred CccCccceecCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 004725 4 PKKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEI 83 (733)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~~~LY~~l~~~i~~~~~~i 83 (733)
+++|+++||||++++.+|++|+++.|..|++||+.|+++++.+.||+++|+.||++|++++|+.||+++++.+..|+..+
T Consensus 38 ~~~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~ 117 (759)
T 2hye_C 38 GGSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQ 117 (759)
T ss_dssp ---CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 35788999999988778889999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCcHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 004725 84 CKSIEA--AQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTH-KTPVHELGLNLWRDVVIHSSKIQTRLQDTLL 160 (733)
Q Consensus 84 ~~~l~~--~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLDr~yv~~~~-~~~i~~~~l~~f~~~v~~~~~l~~~l~~~il 160 (733)
++.+.. .+++.||..|..+|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++|+.++.+.++++++++
T Consensus 118 ~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL 197 (759)
T 2hye_C 118 ILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGIL 197 (759)
T ss_dssp HHHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 887744 2335899999999999999999999999999999999876 7999999999999999997779999999999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhCcccchhhhhHhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh
Q 004725 161 ELVQRERSGEVINRGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVS 240 (733)
Q Consensus 161 ~~I~~~R~g~~i~~~~lk~ii~~l~~lg~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~~~~~l~~E~~r~~ 240 (733)
++|+++|+|+.+|+.+++++++||.+|+ +|.+.||++||++|..||+.+++.|+++.++++|+++|+.++++|.+||.
T Consensus 198 ~lI~~eR~Ge~id~~llk~vi~ml~~L~--vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~ 275 (759)
T 2hye_C 198 LLIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVI 275 (759)
T ss_dssp HHHHTTTTTCCCCHHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhHhh
Q 004725 241 HYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLV 320 (733)
Q Consensus 241 ~~l~~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~ 320 (733)
.||+++|.++|.++|+++||.+|++.+++ +|+..||++++.++|++||+|+++++++++.|+..|++||++.|.+++
T Consensus 276 ~yL~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv 352 (759)
T 2hye_C 276 TYLDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIV 352 (759)
T ss_dssp TTSCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHh
Confidence 99999999999999999999999999985 489999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHhhcCCCCCChHHH
Q 004725 321 SDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLN-SRSPEFISLFVDDKLRKGLRGVSEEDV 399 (733)
Q Consensus 321 ~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~~-~~~~e~La~y~D~~l~~~~~~~~~~~~ 399 (733)
.+... +..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+ .++||+||+|||.+||+|.++.+++++
T Consensus 353 ~~~~~---~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~ 429 (759)
T 2hye_C 353 INPEK---DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEEL 429 (759)
T ss_dssp SCGGG---TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTH
T ss_pred cCccc---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHH
Confidence 76542 47899999999999999999999999999999999999999974 689999999999999998888888999
Q ss_pred HHHHHhHhhhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHHHhhCchhhhhHHHHHhhHHHHHHHHHHHH
Q 004725 400 ENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFY 479 (733)
Q Consensus 400 e~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~ 479 (733)
+..+++++.+|+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++||.+||.+||++|++|++|+..|++++..|+
T Consensus 430 e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~ 509 (759)
T 2hye_C 430 ERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFK 509 (759)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC-CCCCCceEEEEecCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhccCCCceeEeecCcceEEEEEeeCCCceEE
Q 004725 480 ASLGAE-SGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHE 558 (733)
Q Consensus 480 ~~~~~~-~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~~ 558 (733)
++.... .+.+++|+|.|||+++||.++..++.+|++|..+++.|++||..+|+||+|+|.+++|+|+|+++|++ ++++
T Consensus 510 ~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~-~~~~ 588 (759)
T 2hye_C 510 QHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKE-GKKE 588 (759)
T ss_dssp HHHHTTCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSS-CCCE
T ss_pred HHHhcccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCC-ceEE
Confidence 876321 23368999999999999999888999999999999999999999999999999999999999999987 7899
Q ss_pred EEeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccCcCCcceE
Q 004725 559 LNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKV 638 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f~~~~~ki 638 (733)
++||++||+||++||+.+++|+++|++.||+++++|+++|++|++++.+ ||.+.|+++++.+++.|.+|.+|+++..||
T Consensus 589 l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~-vL~~~p~~~~v~~~d~f~lN~~f~~~~~ri 667 (759)
T 2hye_C 589 FQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRI 667 (759)
T ss_dssp EEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTC-SEEETTCSSSCCSSCEEEECCCCCCSCSSE
T ss_pred EEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCc-eeecCCCCCCCCCCCEEEeeccccCCceEE
Confidence 9999999999999999999999999999999999999999999976666 999999999999999999999999999999
Q ss_pred EeccccccCCCchhhHHHHHHHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhc
Q 004725 639 KIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREF 718 (733)
Q Consensus 639 ~i~~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIerey 718 (733)
+|+.+.. +++.+|.+.+.+.+.+||+..|+||||||||+||+|+|++|+.+|+++++ |+|++.+||+|||+||+|||
T Consensus 668 ki~~i~~-~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereY 744 (759)
T 2hye_C 668 KINQIQM-KETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDY 744 (759)
T ss_dssp ECGGGGG-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTS
T ss_pred Eeccccc-cccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccc
Confidence 9987543 46777778888999999999999999999999999999999999999998 99999999999999999999
Q ss_pred ccccCCCCcceeecC
Q 004725 719 LERDKVDRKLYRYLA 733 (733)
Q Consensus 719 i~rd~~~~~~y~Yva 733 (733)
|+||++|+++|+|+|
T Consensus 745 leR~~~~~~~y~YlA 759 (759)
T 2hye_C 745 MERDKDNPNQYHYVA 759 (759)
T ss_dssp CBCCSSCTTEEECCC
T ss_pred eecCCCCCCeeEecC
Confidence 999999999999998
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=2.1e-133 Score=1175.92 Aligned_cols=698 Identities=35% Similarity=0.593 Sum_probs=655.1
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CCCcHHHHHHHHhhhccCC---------------------------chHHHHHHHHHHH
Q 004725 25 AEKTWKILEHAIHEIYNHNA-SGLSFEELYRNAYNMVLHK---------------------------FGEKLYSGLVTTM 76 (733)
Q Consensus 25 ~~~~W~~l~~~i~~I~~~~~-~~~s~~~lY~~vy~lc~~~---------------------------~~~~LY~~l~~~i 76 (733)
|++.|..|++||+.|+++.+ +..+||++|++||++|+++ +|+.||+++++.+
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence 57899999999999999743 4456999999999999986 6889999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC------CCcHHHHHHHHHHHHHhcchh
Q 004725 77 TFHLTEICKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTH------KTPVHELGLNLWRDVVIHSSK 150 (733)
Q Consensus 77 ~~~~~~i~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLDr~yv~~~~------~~~i~~~~l~~f~~~v~~~~~ 150 (733)
..|+..++..+....++++|..|..+|.+|+.++.+|+++|+||||+|+.++. .++|+++|+.+|+++||. +
T Consensus 81 ~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~--~ 158 (760)
T 1ldj_A 81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFR--P 158 (760)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTT--T
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHHHHH--H
Confidence 99999977766556678999999999999999999999999999999999865 689999999999999999 8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhC------------cccchhhhhHhHHHHHHHHHHHHHHHHHhh
Q 004725 151 IQTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLG------------SFVYQDDFEKHFLEVSADFYRLESQEFIES 218 (733)
Q Consensus 151 l~~~l~~~il~~I~~~R~g~~i~~~~lk~ii~~l~~lg------------~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~ 218 (733)
+.++++++++++|+++|+|+.+|+.+|+++++||++|| ..+|.+.||++||++|..||+.++..|+++
T Consensus 159 l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l~~ 238 (760)
T 1ldj_A 159 LNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQ 238 (760)
T ss_dssp TTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999996 367999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCC
Q 004725 219 CDCGDYLKKAERRLNEEMERVSHYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVP 298 (733)
Q Consensus 219 ~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~ 298 (733)
.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|.+.|+ +||..||++++.++|++||+||++++
T Consensus 239 ~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L~~rv~ 314 (760)
T 1ldj_A 239 NPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLVSRIQ 314 (760)
T ss_dssp SCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHhCcCc
Confidence 99999999999999999999999999999999999999999999999985 59999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhHhhcCccc--CCCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCC----
Q 004725 299 SGLILIRDVMTSYIRDTGKQLVSDPER--LKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLN---- 372 (733)
Q Consensus 299 ~~l~~l~~~~~~~i~~~g~~~~~~~~~--~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~~---- 372 (733)
+|++.|+..|++||++.|.+++.+... ..+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 315 ~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~ 394 (760)
T 1ldj_A 315 DGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394 (760)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcccc
Confidence 999999999999999999999876422 24789999999999999999999999999999999999999999975
Q ss_pred -----CCchHHHHHHHHHHhhcCCCCCChHHHHHHHHhHhhhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 004725 373 -----SRSPEFISLFVDDKLRKGLRGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIV 447 (733)
Q Consensus 373 -----~~~~e~La~y~D~~l~~~~~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~ 447 (733)
.++||+||+|||.+||+|.++.++++++..+++++.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.||+
T Consensus 395 ~~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~ 474 (760)
T 1ldj_A 395 MAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMIS 474 (760)
T ss_dssp HHTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHH
T ss_pred ccccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 789999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCchhhhhHHHHHhhHHHHHHHHHHHHhhhhcCCCCCCceEEEEecCCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 004725 448 KLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASLGAESGDSPTLTVQVLTTGSWPTQPSATCNLPAEIMGICEKFRSYY 527 (733)
Q Consensus 448 ~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~VLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y 527 (733)
+||.+||.+||++|++|++|+..|++++..|+++...+...+++|+|.|||+++||.++..++.+|++|..+++.|++||
T Consensus 475 ~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY 554 (760)
T 1ldj_A 475 KLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFY 554 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHT
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999886321234689999999999999988889999999999999999999
Q ss_pred hccCCCceeEeecCcceEEEEEeeCCCceEEEEeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCc
Q 004725 528 LGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGK 607 (733)
Q Consensus 528 ~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~~l~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~ 607 (733)
..+|+||+|+|.|++|+|+|+++|++ ++++++||++||+||++||+.+++|+++|++.|||++++++++|++|++.|
T Consensus 555 ~~~~~~RkL~W~~~lg~~~l~~~~~~-~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~-- 631 (760)
T 1ldj_A 555 ASRHSGRKLTWLYQLSKGELVTNCFK-NRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSK-- 631 (760)
T ss_dssp TTTCTTCCEEECGGGCCCEEEESSSS-SCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTT--
T ss_pred HHhCCCCeEEEecccccEEEEEEECC-ceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC--
Confidence 99999999999999999999999987 789999999999999999999999999999999999999999999999777
Q ss_pred ceeeccC-----CCCCCCCCCeEeecccCcCCcceEEeccccccCCCchhhHHHHHHHHhhhhhhhhhheehhcccCCCC
Q 004725 608 HVLRKEP-----MSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVL 682 (733)
Q Consensus 608 ~iL~~~~-----~~~~~~~~~~f~~N~~f~~~~~ki~i~~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l 682 (733)
||.+.| +|+++++++.|.+|.+|++++.||+|+. +.+.++.+|.+.+.+.+.+||+..|+||||||||+||+|
T Consensus 632 -iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~-~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l 709 (760)
T 1ldj_A 632 -LLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINV-PMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVL 709 (760)
T ss_dssp -TEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCC-CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEE
T ss_pred -cceeCCCccccccCCCCCCCEEEeeccccCCceEEEecC-ccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCC
Confidence 998554 7888999999999999999999999984 334455566677888999999999999999999999999
Q ss_pred ChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeecC
Q 004725 683 DHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 733 (733)
Q Consensus 683 ~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yva 733 (733)
+|++|+.+|+++++++|+|++.+||+|||+||+||||+||++|+++|+|+|
T Consensus 710 ~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 710 KHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp EHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred cHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 999999999999999999999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=8.1e-79 Score=657.60 Aligned_cols=359 Identities=30% Similarity=0.523 Sum_probs=327.5
Q ss_pred CCCchHHHHHHHHHHhhcCC--CCCChHHHHHHHHhHhhhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 004725 372 NSRSPEFISLFVDDKLRKGL--RGVSEEDVENVLDKVMMLFRFLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKL 449 (733)
Q Consensus 372 ~~~~~e~La~y~D~~l~~~~--~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~L 449 (733)
..+.||+||+|||.+||+|. ++.++++++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 35889999999999999973 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCc--hhhhhHHHHHhhHHHHHHHHHHHHhhhhcCC--CCCCceEEEEecCCCCCCCC-CCCCCCcHHHHHHHHHHH
Q 004725 450 KTECGY--QFTSKLEGMFTDMKTSQDTMQGFYASLGAES--GDSPTLTVQVLTTGSWPTQP-SATCNLPAEIMGICEKFR 524 (733)
Q Consensus 450 k~~~G~--~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~--~~~~~~~~~VLt~~~WP~~~-~~~~~lP~~l~~~~~~f~ 524 (733)
+ +||. +||++|++|++|+..|++++..|++...... ..+++|+|.|||+++||.++ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHH
Confidence 9 9996 9999999999999999999999998863211 12579999999999999874 678999999999999999
Q ss_pred HHHhccCCCceeEeecCcceEEEEEeeCCCceEEEEeeHHHHHHHHHHhCC--CCcCHHHHHHHcCCChHHHHHHHHHhh
Q 004725 525 SYYLGTHTGRRLTWQTNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSI--DRLSYKEIEQATEIPAPELKRCLQSLA 602 (733)
Q Consensus 525 ~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~~l~~s~~Qa~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~ 602 (733)
+||..+|+||+|+|.|++|+|+|++++++ ++++|+||++||+||++||+. +++|++||++.|||++++|+++|++|+
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~-~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~ 240 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEV-GQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLV 240 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSS-CEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEecCcccEEEEEEeCC-ceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999987 799999999999999999985 789999999999999999999999998
Q ss_pred hc---cCcceeeccCC---CCCCCCCCeEeecccCcCC-----cceEEeccccc-cCCCchhhHHHHHHHHhhhhhhhhh
Q 004725 603 CV---KGKHVLRKEPM---SKDIAEDDAFFFNDKFTSK-----FVKVKIGTVVA-QRESEPENQETRQRVEEDRKPQIEA 670 (733)
Q Consensus 603 ~~---k~~~iL~~~~~---~~~~~~~~~f~~N~~f~~~-----~~ki~i~~~~~-~~~~~~e~~~~~~~~~~~r~~~i~A 670 (733)
+. |.+ ||.+.|. +++++++|.|.+|.+|++. .+|++|+.+.. +.++..+.+++.+.+.+||+..|||
T Consensus 241 ~~~k~k~~-iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~A 319 (382)
T 3dpl_C 241 AFPKLKRQ-VLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQE 319 (382)
T ss_dssp CCTTCSSC-SEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcc-eeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeE
Confidence 73 345 9988875 3678899999999999862 36677765421 2345566677889999999999999
Q ss_pred heehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeecC
Q 004725 671 AIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 733 (733)
Q Consensus 671 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yva 733 (733)
|||||||+||+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+||++|+++|+|||
T Consensus 320 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 320 AIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-70 Score=600.69 Aligned_cols=381 Identities=49% Similarity=0.823 Sum_probs=345.0
Q ss_pred ccCccceecCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHH-HH
Q 004725 5 KKRTFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLT-EI 83 (733)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~~~LY~~l~~~i~~~~~-~i 83 (733)
|+|+++|||| ++++|+.|+++.|+.|++||+.|+++.+++.||++||+.||++|++++|++||+++++.+.+|+. .+
T Consensus 12 ~~~k~~i~~~--~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v 89 (410)
T 4ap2_B 12 KDTKMRIRAF--PMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKV 89 (410)
T ss_dssp -----CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCeeeeeCC--CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4488999999 46899999999999999999999999999999999999999999999999999999999999999 59
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCcHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 004725 84 CKSIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELV 163 (733)
Q Consensus 84 ~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLDr~yv~~~~~~~i~~~~l~~f~~~v~~~~~l~~~l~~~il~~I 163 (733)
.+.+....++.||..|..+|.+|+.++.+|+++|+||||+|+.+++.++|+++|+.+|+++|+.++++.++++++++.+|
T Consensus 90 ~~~l~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI 169 (410)
T 4ap2_B 90 REDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMI 169 (410)
T ss_dssp HHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99988777778999999999999999999999999999999999889999999999999999987789999999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHhC---cccchhhhhHhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHh
Q 004725 164 QRERSGEVINRGLMRNITKMLMDLG---SFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVS 240 (733)
Q Consensus 164 ~~~R~g~~i~~~~lk~ii~~l~~lg---~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~~~~~l~~E~~r~~ 240 (733)
+++|+|+.+|+.+++++++||.+|| ..+|.+.||++||++|..||+.+++.|+++.++++||++|+.++++|.+||.
T Consensus 170 ~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~ 249 (410)
T 4ap2_B 170 ARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVM 249 (410)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 3579999999999999999999999999999999999999999999999999
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhHhh
Q 004725 241 HYLDARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLV 320 (733)
Q Consensus 241 ~~l~~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~ 320 (733)
.||+++|.++|.++|+++||.+|.+.|++++++||..||++++.++|++||+||+++++|++.|+..|++||++.|.+++
T Consensus 250 ~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv 329 (410)
T 4ap2_B 250 HCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALV 329 (410)
T ss_dssp HTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998878899999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHh
Q 004725 321 SDPERLKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNSRSPEFISLFVDDKL 387 (733)
Q Consensus 321 ~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~~~~~~e~La~y~D~~l 387 (733)
.+.....+|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+.+.||+||+|||..-
T Consensus 330 ~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~~spElla~y~D~~~ 396 (410)
T 4ap2_B 330 SEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNSRSPEYLAENLYFQS 396 (410)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC---------------
T ss_pred hccccccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHccCcc
Confidence 8876666789999999999999999999999999999999999999999998899999999999853
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=3.2e-65 Score=551.72 Aligned_cols=355 Identities=50% Similarity=0.844 Sum_probs=289.3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHH
Q 004725 17 RVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLT-EICKSIEAAQGGLF 95 (733)
Q Consensus 17 ~~~~~~~~~~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~~~LY~~l~~~i~~~~~-~i~~~l~~~~~~~~ 95 (733)
++++|+.|+++.|+.|++||+.|+++.+++.||++||+.||++|++++|++||+++++.+.+|+. .+.+.+.+..++.+
T Consensus 5 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~~~~ 84 (364)
T 4eoz_B 5 PMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNF 84 (364)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSSH
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999 59999887777789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCcHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCCCChH
Q 004725 96 LEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVINRG 175 (733)
Q Consensus 96 L~~~~~~W~~~~~~~~~l~~if~YLDr~yv~~~~~~~i~~~~l~~f~~~v~~~~~l~~~l~~~il~~I~~~R~g~~i~~~ 175 (733)
|..+.++|.+|+.++.+|+++|+||||+|+.+++.++|+++|+.+|+++|+.++++.++++++++.+|+++|.|+.+|+.
T Consensus 85 L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~ 164 (364)
T 4eoz_B 85 LQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRG 164 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 99999999999999999999999999999999989999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHHhC---cccchhhhhHhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccChhhHHHHH
Q 004725 176 LMRNITKMLMDLG---SFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKIT 252 (733)
Q Consensus 176 ~lk~ii~~l~~lg---~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~ 252 (733)
+++++++||.+|| ..+|.+.||++||++|..||+.+++.|+++.++++||++|+.++++|.+||..||+++|.++|.
T Consensus 165 lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~ 244 (364)
T 4eoz_B 165 AIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIV 244 (364)
T ss_dssp HHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHH
Confidence 9999999999998 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhHhhcCcccCCCchHH
Q 004725 253 NVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDF 332 (733)
Q Consensus 253 ~~~~~~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~ 332 (733)
++|+++||.+|.+.|++++++||..||++++.++|++||+||+++++|++.|+..|++||++.|.+++.+.....+|..|
T Consensus 245 ~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~~~~ 324 (364)
T 4eoz_B 245 KVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDY 324 (364)
T ss_dssp HHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccccCChHHH
Confidence 99999999999999998878899999999999999999999999999999999999999999999999887666678999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcC
Q 004725 333 VQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINL 371 (733)
Q Consensus 333 i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~ 371 (733)
|+.|+++|++|+.++.+||++|+.|..++++||+.|+|.
T Consensus 325 V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~ 363 (364)
T 4eoz_B 325 RQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNL 363 (364)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999995
No 6
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=4.3e-63 Score=533.09 Aligned_cols=349 Identities=32% Similarity=0.614 Sum_probs=326.8
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHHhh--hhHH
Q 004725 17 RVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVTTMTFHLTEICKSIEAA--QGGL 94 (733)
Q Consensus 17 ~~~~~~~~~~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~~~LY~~l~~~i~~~~~~i~~~l~~~--~~~~ 94 (733)
|+++|++|+++.|+.|++||..|+++.+++.||+++|+.||++|++++|++||+++++.+..|+...+..+.+. +++.
T Consensus 2 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~ 81 (354)
T 4a64_A 2 MPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVL 81 (354)
T ss_dssp CCCCCSSSTTHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 46688889999999999999999999999999999999999999999999999999999999998854444322 3468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCcHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 004725 95 FLEELNRKWADHNKALQMIRDILMYMDRTFIPSTH-KTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQRERSGEVIN 173 (733)
Q Consensus 95 ~L~~~~~~W~~~~~~~~~l~~if~YLDr~yv~~~~-~~~i~~~~l~~f~~~v~~~~~l~~~l~~~il~~I~~~R~g~~i~ 173 (733)
||+.+.++|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++|+.++++.++++++++.+|+++|.|+.+|
T Consensus 82 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 161 (354)
T 4a64_A 82 FLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAID 161 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999876 69999999999999999988899999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCcccchhhhhHhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHH
Q 004725 174 RGLMRNITKMLMDLGSFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMERVSHYLDARSEAKITN 253 (733)
Q Consensus 174 ~~~lk~ii~~l~~lg~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~ 253 (733)
+.+++++++||.+|+ +|.+.||++||++|..||+.+++.|+++.++++||++|+.++++|.+||..||+++|.+++.+
T Consensus 162 ~~lik~~i~ml~~L~--vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~ 239 (354)
T 4a64_A 162 RSLLRSLLSMLSDLQ--IYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIA 239 (354)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 999999999999995 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCCCChHHHHHHHHHHHHHHHhHhhcCcccCCCchHHH
Q 004725 254 VVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRDTGKQLVSDPERLKDPVDFV 333 (733)
Q Consensus 254 ~~~~~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~i 333 (733)
+|+++||.+|.+.|+ ++|+..||++++.++|++||+||+++++|++.|+..|++||++.|.+++.+.. ++..||
T Consensus 240 ~~e~~LI~~h~~~ll---~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~---~~~~~V 313 (354)
T 4a64_A 240 TVEKQLLGEHLTAIL---QKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE---KDKTMR 313 (354)
T ss_dssp HHHHHHTGGGHHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCC---SSSCHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCcc---chHHHH
Confidence 999999999999998 46999999999999999999999999999999999999999999999997654 467899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCC
Q 004725 334 QRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINLNS 373 (733)
Q Consensus 334 ~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~~~ 373 (733)
+.|+++|++|+.++.+||++|+.|..++++||+.|+|.++
T Consensus 314 ~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 314 QELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999753
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=3e-59 Score=509.40 Aligned_cols=346 Identities=19% Similarity=0.391 Sum_probs=320.5
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhhCC-CCCcHHHHHHHHhhhccC--CchHHHHHHHHHHHHHHHHHHHHHHHhh-hh
Q 004725 17 RVVVDPKYAEKTWKILEHAIHEIYNHNA-SGLSFEELYRNAYNMVLH--KFGEKLYSGLVTTMTFHLTEICKSIEAA-QG 92 (733)
Q Consensus 17 ~~~~~~~~~~~~W~~l~~~i~~I~~~~~-~~~s~~~lY~~vy~lc~~--~~~~~LY~~l~~~i~~~~~~i~~~l~~~-~~ 92 (733)
.++.+ |+++|+.|++||++|+.+.+ ++.+|+++|++||++|++ ++|++||+++++.+..|+..++..+... .+
T Consensus 10 ~~~~~---~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~~~ 86 (391)
T 2wzk_A 10 KGSLQ---FEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQDD 86 (391)
T ss_dssp --CCS---HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCSH
T ss_pred Ccccc---HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 34456 99999999999999999754 456899999999999996 6899999999999999999977766543 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC--------CCCcHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q 004725 93 GLFLEELNRKWADHNKALQMIRDILMYMDRTFIPST--------HKTPVHELGLNLWRDVVIHSSKIQTRLQDTLLELVQ 164 (733)
Q Consensus 93 ~~~L~~~~~~W~~~~~~~~~l~~if~YLDr~yv~~~--------~~~~i~~~~l~~f~~~v~~~~~l~~~l~~~il~~I~ 164 (733)
+.+|..|..+|.+|+.++.+|+++|+||||+|+.+. +.++|+++|+.+|+++||. +++++++++++.+|.
T Consensus 87 e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~--~i~~~l~~~ll~lI~ 164 (391)
T 2wzk_A 87 TALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFS--NIKNRLQDSAMKLVH 164 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999653 3579999999999999998 899999999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHHhC------cccchhhhhHhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 004725 165 RERSGEVINRGLMRNITKMLMDLG------SFVYQDDFEKHFLEVSADFYRLESQEFIESCDCGDYLKKAERRLNEEMER 238 (733)
Q Consensus 165 ~~R~g~~i~~~~lk~ii~~l~~lg------~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~~~~~l~~E~~r 238 (733)
++|+|+.+|+++++++++||+.|| ..+|.+.||++||++|..||+.+++.|+++.++++||++|+.++++|.+|
T Consensus 165 ~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R 244 (391)
T 2wzk_A 165 AERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKR 244 (391)
T ss_dssp HHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 56899999999999999999999999999999999999999999999999
Q ss_pred HhhccC----hhhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHhHccCcHhHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 004725 239 VSHYLD----ARSEAKITNVVEKEMIESHMNRLVHMENSGLVNMLVDDKYEDLGRMYCLFRRVPSGLILIRDVMTSYIRD 314 (733)
Q Consensus 239 ~~~~l~----~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~ 314 (733)
|..||+ ++|.++|.++|+++||.+|.+.|++ |+..||++++.+||++||+||+++++|++.|+..|++||++
T Consensus 245 ~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~ 320 (391)
T 2wzk_A 245 ALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIIS 320 (391)
T ss_dssp HHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHH
T ss_pred HHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999974 79999999999999999999999999999999999999999
Q ss_pred HHhHhhcCccc--CCCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcC
Q 004725 315 TGKQLVSDPER--LKDPVDFVQRLLDLKDKYDKVINSAFNNDKTFQNALNSSFEYFINL 371 (733)
Q Consensus 315 ~g~~~~~~~~~--~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~ln~ 371 (733)
.|.+++..... ..+|..||+.|+++|++|+.++.+||++|+.|.+++++||+.|+|.
T Consensus 321 ~G~~~v~~~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~ 379 (391)
T 2wzk_A 321 AGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVND 379 (391)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 99998754322 2478999999999999999999999999999999999999999996
No 8
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.92 E-value=2.3e-26 Score=189.80 Aligned_cols=82 Identities=37% Similarity=0.608 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCccee
Q 004725 651 PENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYR 730 (733)
Q Consensus 651 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~ 730 (733)
+|.+++.+.+.+||...|+||||||||++|+|+|++|+.+|+++++++|+|++.+||+|||.||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 466778999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred ecC
Q 004725 731 YLA 733 (733)
Q Consensus 731 Yva 733 (733)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 9
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.92 E-value=4.5e-27 Score=196.37 Aligned_cols=88 Identities=66% Similarity=1.020 Sum_probs=82.1
Q ss_pred cCCCchhhHHHHHHHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCC
Q 004725 646 QRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVD 725 (733)
Q Consensus 646 ~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~ 725 (733)
+.++.+|.+.+.+.+.+||...||||||||||++|+|+|++|+.+|.++++++|+|++.+||+|||.||+||||+||++|
T Consensus 5 ~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d 84 (92)
T 1iuy_A 5 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 84 (92)
T ss_dssp CCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCC
Confidence 45566666778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeecC
Q 004725 726 RKLYRYLA 733 (733)
Q Consensus 726 ~~~y~Yva 733 (733)
++.|+|+|
T Consensus 85 ~~~y~Y~A 92 (92)
T 1iuy_A 85 RKVYTYVA 92 (92)
T ss_dssp SSEEEEC-
T ss_pred CCeeEecC
Confidence 99999998
No 10
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.92 E-value=1.6e-26 Score=186.20 Aligned_cols=75 Identities=56% Similarity=0.801 Sum_probs=73.4
Q ss_pred HHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeecC
Q 004725 659 RVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 733 (733)
Q Consensus 659 ~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yva 733 (733)
.+++||...|+||||||||++|+|+|++|+.+|+++++++|+|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=2.7e-26 Score=194.19 Aligned_cols=93 Identities=47% Similarity=0.701 Sum_probs=83.6
Q ss_pred EEeccccccCCCchhhHHHHHHHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhh
Q 004725 638 VKIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIERE 717 (733)
Q Consensus 638 i~i~~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIere 717 (733)
++|+.+.. +++.+|.+.+.+.+.+||...||||||||||++|+|+|++|+.+|.++++ |+|++.+||+|||.||+||
T Consensus 3 ~ki~~i~~-ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIere 79 (101)
T 2do7_A 3 SGSSGIQM-KETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRD 79 (101)
T ss_dssp CSSCSCCC-CCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTT
T ss_pred eeeccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhh
Confidence 34554332 35666777788999999999999999999999999999999999999998 9999999999999999999
Q ss_pred cccccCCCCcceeecC
Q 004725 718 FLERDKVDRKLYRYLA 733 (733)
Q Consensus 718 yi~rd~~~~~~y~Yva 733 (733)
||+||++|+++|+|+|
T Consensus 80 YleR~~~d~~~y~YlA 95 (101)
T 2do7_A 80 YMERDKENPNQYNYIA 95 (101)
T ss_dssp SEEECSSCTTEEEECC
T ss_pred HHhcCCCCCCeEEEec
Confidence 9999999999999998
No 12
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=90.57 E-value=0.45 Score=39.31 Aligned_cols=53 Identities=11% Similarity=0.266 Sum_probs=45.2
Q ss_pred EEEEeeHHHHHHHHHHhC--CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 557 HELNVSTYQMCVLMLFNS--IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 557 ~~l~~s~~Qa~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
....++..|..||....+ +++++..+|++.++++...+.++|..|...+ ++..
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kg---lIkr 68 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKK---LIKA 68 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEE
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEE
Confidence 334568899999988776 5689999999999999999999999999877 7764
No 13
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=89.05 E-value=0.55 Score=38.93 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=43.1
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+..+..||..+.+++.+|..+|++.+|++...+.++|..|...+ ++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~g---lv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEG---LIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEE
Confidence 46788888888887789999999999999999999999999877 77654
No 14
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=88.77 E-value=0.48 Score=37.75 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=38.9
Q ss_pred HHHHHHhCC------CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCC
Q 004725 567 CVLMLFNSI------DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSK 617 (733)
Q Consensus 567 ~iLl~Fn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~ 617 (733)
.||....+. ...|+.||++.+|++...+.+.|..|...+ +|.+.+.+.
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG---~I~R~~ggr 61 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVG---VLEKVNAGK 61 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEESCSS
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---cEEecCCCC
Confidence 355454443 789999999999999999999999999888 888876543
No 15
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=88.65 E-value=0.25 Score=55.75 Aligned_cols=137 Identities=11% Similarity=0.102 Sum_probs=50.2
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhcc---CcceeeccCCCCCCCCCCeEeecccCcCCcceE
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK---GKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKV 638 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k---~~~iL~~~~~~~~~~~~~~f~~N~~f~~~~~ki 638 (733)
+..+..||....++..+|..++++.+|++...+.+.|..|+... .+ ++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~g-lie~~--------g~~y~L~~~~~~~~~~~ 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAP-LIIAH--------DGVWLLGNACREILRKV 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEE-SEEEE--------TTEEEECHHHHHHHTSC
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccc-eEEEe--------CCEEEECHHHHHHhccc
Confidence 45677888777778899999999999999999999999999821 22 77654 36788887643211100
Q ss_pred EeccccccCCCchhhHHHHHHHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhc
Q 004725 639 KIGTVVAQRESEPENQETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREF 718 (733)
Q Consensus 639 ~i~~~~~~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIerey 718 (733)
. +. +..-...... -....+..|+..++.++.++-.++.+.+ ..+...+.+.|..|+++|-
T Consensus 500 --~------~~-~~~~~~~~~~---~~~~~~~~I~~~l~~~g~it~~di~~l~--------~ls~~qa~~~L~~Lv~~G~ 559 (583)
T 3lmm_A 500 --E------PS-PFSPVRYLST---DQAELTNAAMLWLSEVGDLATSDLMAMC--------GVSRGTAKACVDGLVDEER 559 (583)
T ss_dssp --C-----------------------------------------------------------------------------
T ss_pred --c------cc-cccccccccC---ChhHHHHHHHHHHHHcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCc
Confidence 0 00 0000000001 0234556799999999999988876432 2466778999999999999
Q ss_pred ccccCCCCc
Q 004725 719 LERDKVDRK 727 (733)
Q Consensus 719 i~rd~~~~~ 727 (733)
|++....++
T Consensus 560 l~~~G~gr~ 568 (583)
T 3lmm_A 560 VVAVGGGRS 568 (583)
T ss_dssp ---------
T ss_pred EEEeCCCCc
Confidence 999765543
No 16
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.84 E-value=0.52 Score=39.61 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=44.3
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||..+...+.+|..+|++.+|++...+.++|..|...+ ++...
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~g---lv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRG---FVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEEE
Confidence 477899999888777789999999999999999999999999888 77654
No 17
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=87.63 E-value=1 Score=37.43 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=41.4
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+.....||....+ +.+|+.||++.+|++...+.++|..|...+ ++....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~G---lv~~~~ 70 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDG---LVTTRK 70 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEEEE
Confidence 4556677777766 789999999999999999999999999888 887654
No 18
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.50 E-value=1.3 Score=35.34 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=37.1
Q ss_pred HHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 567 CVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 567 ~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.||..+.+.+.+|..||++.+|++...+.+.|..|...+ ++...
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~G---lI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAG---MVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHT---SEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEe
Confidence 456566666789999999999999999999999999887 77643
No 19
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=87.24 E-value=1.1 Score=37.09 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=44.5
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeeccc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDK 630 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~ 630 (733)
+..+..||..+ .+.+|+.+|++.+|++...+.++|..|...+ ++.... +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~G---lv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGF---CIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEEC--------CEEEECCC
Confidence 45566777666 4569999999999999999999999999887 887653 26777654
No 20
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=87.00 E-value=0.8 Score=36.44 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCC---CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 565 QMCVLMLFNSID---RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 565 Qa~iLl~Fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+..||..+.+.. .+|..||++.+|++...+.++|..|...+ ++...+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G---~I~~~g 65 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG---KLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT---SEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEecC
Confidence 355665555444 89999999999999999999999998877 776654
No 21
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=86.67 E-value=0.8 Score=40.94 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G---lv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQG---LIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEeecc
Confidence 478999999888777789999999999999999999999999988 887654
No 22
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.63 E-value=0.94 Score=40.41 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=45.6
Q ss_pred EEeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 559 LNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+.+|+.|..||.....++ +|..+|++.+|++...+.++|..|...| ++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~G---lv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEG---MLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCC---CeEecc
Confidence 346899999999998888 9999999999999999999999999988 887654
No 23
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=86.42 E-value=0.76 Score=36.67 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=38.2
Q ss_pred HHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 568 VLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 568 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
|+...++++.++++||++.+++++..+++-|..|...+ .|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G---~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMG---KAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHT---SEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEe
Confidence 56677888899999999999999999999999999887 77665
No 24
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=86.06 E-value=0.67 Score=41.27 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=46.3
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||.....++++|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~G---lv~r~~ 84 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKD---YVVRTR 84 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCC---CeEecC
Confidence 578999999998888899999999999999999999999999988 887654
No 25
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=85.99 E-value=0.67 Score=41.32 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=42.6
Q ss_pred EeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 560 NVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
.+|..|+.||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~G---lv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRN---LVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTT---SEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC---CEeecc
Confidence 3588999999998888899999999999999999999999999988 887654
No 26
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=85.71 E-value=0.79 Score=40.11 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=43.9
Q ss_pred EeeHHHHHHHHHHhCCCC--cCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 560 NVSTYQMCVLMLFNSIDR--LSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~~~--~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.++..|..||..+.+.+. +|..+|++.+|++...+.++|..|...+ ++.+.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G---lV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE---ILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEee
Confidence 457889999987776555 9999999999999999999999999888 77654
No 27
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=85.07 E-value=1 Score=40.31 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=45.4
Q ss_pred EeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 560 NVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
.++..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G---lv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKK---YIEVNG 88 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEC--
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEeec
Confidence 3588999999988888899999999999999999999999999987 787653
No 28
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=85.05 E-value=1.1 Score=35.94 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=44.9
Q ss_pred EeeHHHHHHHHHHhCC--CCcCHHHHHHHc-----CCChHHHHHHHHHhhhccCcceeeccC
Q 004725 560 NVSTYQMCVLMLFNSI--DRLSYKEIEQAT-----EIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
..+.-+..||..+.+. ..+|++||++.+ +++...+.++|..|...+ ++.+.+
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G---lv~~~~ 72 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG---IVTRHN 72 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT---SEEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC---CeEEEe
Confidence 4577888899888875 589999999999 999999999999999988 777643
No 29
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=84.91 E-value=1.2 Score=37.35 Aligned_cols=51 Identities=10% Similarity=0.235 Sum_probs=41.4
Q ss_pred eeHHHHHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..+|+.+-. .+.+|..||++.+|++...+.++|..|...+ ++...+
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g---~v~~~~ 70 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELG---LVVRTK 70 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEeec
Confidence 35667777655543 6789999999999999999999999999888 777653
No 30
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=84.89 E-value=1.4 Score=39.79 Aligned_cols=51 Identities=8% Similarity=0.154 Sum_probs=45.7
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~G---lv~r~~ 91 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARG---LVTRVA 91 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEECC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEecc
Confidence 478899999999888899999999999999999999999999887 777653
No 31
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.64 E-value=1.1 Score=39.75 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=44.4
Q ss_pred eeHHHHHHHHHH-hCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLF-NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~F-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..||..+ ...+.+|..+|++.+|++...+.+.+..|...+ ++...+
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~g---lv~r~~ 86 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQG---LVRRLA 86 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCC---CeeecC
Confidence 366888888888 777889999999999999999999999999888 777653
No 32
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=84.63 E-value=1 Score=41.11 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G---lv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANG---WIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCc---CeEecC
Confidence 477899999888887899999999999999999999999999988 787653
No 33
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.58 E-value=0.87 Score=37.14 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 568 VLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 568 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
|+...++.+.++++||++.+|+++..+++-|..|...+ +|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G---~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMG---KVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTC---CSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEE
Confidence 56677888899999999999999999999999999877 66665
No 34
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=84.49 E-value=1.8 Score=34.78 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCC---CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 565 QMCVLMLFNSID---RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 565 Qa~iLl~Fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+..||..+.+.. .+|..+|++.+|++...+.++|..|...+ ++...+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G---~I~~~g 61 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG---KLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEES
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEecC
Confidence 455665555544 89999999999999999999999998877 776654
No 35
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=84.48 E-value=0.91 Score=40.03 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=44.8
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||.....++.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~g---lv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESG---FIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEee
Confidence 478899999888877889999999999999999999999999887 77664
No 36
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=84.21 E-value=0.74 Score=41.03 Aligned_cols=51 Identities=25% Similarity=0.259 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+.+|..+|++.+|++...+.+.+..|...| ++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G---lv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKE---LIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCC---CeeccC
Confidence 478999999888777899999999999999999999999999988 887654
No 37
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.19 E-value=1.5 Score=38.96 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=43.8
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||.... .+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~g---lv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMG---LVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCC---CEEee
Confidence 4778999998888 7889999999999999999999999999887 77664
No 38
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=83.94 E-value=0.94 Score=40.78 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=44.9
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||.....++++|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~G---lv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSG---WVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHT---SEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEeeCC
Confidence 478999999888877899999999999999999999999999988 887654
No 39
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=83.92 E-value=2.7 Score=35.00 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeeccc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDK 630 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~ 630 (733)
++....||....+ +..|+.||++.+|++...+.++|..|...+ ++.....|. ...|.++..
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~G---lv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESG---IVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTT---SEEEECSSS----CCEEEECSS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEEEEeCC----EEEEEECcH
Confidence 3445566666655 569999999999999999999999999888 887654332 234555543
No 40
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=83.82 E-value=0.86 Score=39.96 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=44.2
Q ss_pred eeHHHHHHHHHHhCC--CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSI--DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||...... +.+|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G---lv~r~~ 87 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQED---YFDKKR 87 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTT---SSCCBC
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEecC
Confidence 477898888777665 789999999999999999999999999988 777654
No 41
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=83.78 E-value=0.37 Score=37.32 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=46.8
Q ss_pred heehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeecC
Q 004725 671 AIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 733 (733)
Q Consensus 671 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yva 733 (733)
..|...|.+|.+..++|- ..|....+++..+|+.|.+.|-|.---+|++.|.||+
T Consensus 11 ~Fi~yIk~~Kvv~LedLA--------~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLA--------FQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHCSEECHHHHH--------HHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHcCeeeHHHHH--------HHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 346777889999887773 2488999999999999999999998888899999985
No 42
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=83.50 E-value=1.3 Score=38.93 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=42.2
Q ss_pred EEeeHHHHHHHHHHh---C--CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 559 LNVSTYQMCVLMLFN---S--IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn---~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+-++.-|+.||+.+- + ....|.++|++.+|++..++.++|+.|...| +|...+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kG---lI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKG---MIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTT---SSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEEe
Confidence 446778887775543 3 2338999999999999999999999999988 777654
No 43
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=83.47 E-value=1.3 Score=40.03 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=44.5
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G---lv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLG---LVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEe
Confidence 478899999888877889999999999999999999999999988 7776
No 44
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=83.39 E-value=1.6 Score=37.94 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=40.5
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++.+..||..+...+.+|+.+|++.+|++...+.++|..|...+ ++....
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~G---lv~~~~ 90 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQG---VVNFRK 90 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEC-
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEEEE
Confidence 44556677777655679999999999999999999999999877 776543
No 45
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=83.37 E-value=0.91 Score=40.02 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=44.7
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~g---li~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDG---YVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCC---Ceeec
Confidence 478899999888877889999999999999999999999999887 77664
No 46
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=83.17 E-value=1.1 Score=39.49 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=44.1
Q ss_pred eeHHHHHHHHHHhCCC--CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSID--RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+ ++|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G---li~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKK---LIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCC---CEeecC
Confidence 4778999998776654 89999999999999999999999999988 777653
No 47
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=83.13 E-value=1.4 Score=39.65 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=45.4
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~G---lv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAG---LIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CeeecC
Confidence 478899999888877789999999999999999999999999888 777653
No 48
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.13 E-value=1.1 Score=39.47 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=44.3
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~g---li~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKG---WVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCC---CEEec
Confidence 477899999888777789999999999999999999999999887 77664
No 49
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=83.11 E-value=1.1 Score=35.74 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=44.4
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcC----CChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATE----IPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|...+ ++.+.+
T Consensus 7 lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kG---lv~r~~ 61 (82)
T 1p6r_A 7 ISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKG---ALNHHK 61 (82)
T ss_dssp CCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCC---CeEEEe
Confidence 5788999998887778899999999996 68899999999999988 887654
No 50
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=82.94 E-value=1.5 Score=38.72 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=43.9
Q ss_pred eeHHHHHHHHHHhCCC--CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSID--RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+ .+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~G---li~r~~ 84 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKK---LLYRKV 84 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCC---CEEeeC
Confidence 4778888888777655 79999999999999999999999999888 776653
No 51
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=82.84 E-value=1.3 Score=36.81 Aligned_cols=50 Identities=6% Similarity=0.047 Sum_probs=44.6
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHH----HHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEI----EQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei----~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||..+...+.+|..+| ++.+|++...+.+.|..|...+ ++.+.
T Consensus 6 lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~g---li~r~ 59 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEG---FVKER 59 (99)
T ss_dssp SBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CEEEE
Confidence 57789999998888888999999 8999999999999999999887 77664
No 52
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=82.25 E-value=2.1 Score=34.09 Aligned_cols=49 Identities=4% Similarity=0.043 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHcCCChH-HHHHHHHHhhhccCcceeeccC
Q 004725 563 TYQMCVLMLFNSIDRLSYKEIEQATEIPAP-ELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 563 ~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~-~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
..+--||.+....+..|..+|++.+|++.. .+.++|..|-..+ ++.+.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eG---lV~~~~ 60 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQG---DVYRQG 60 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTT---SEEEEC
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCC---CEEecC
Confidence 446667766667778999999999999998 9999999999877 776543
No 53
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=81.93 E-value=1.4 Score=39.01 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=44.4
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||.....++.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 29 l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~g---li~~~ 78 (142)
T 3bdd_A 29 ISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESG---YIIRK 78 (142)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEec
Confidence 577899999888777789999999999999999999999999887 77654
No 54
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=81.80 E-value=1.6 Score=39.61 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=44.4
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~g---lv~r~ 96 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERG---FIRRE 96 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEC-
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEeee
Confidence 477899999888877889999999999999999999999999987 88764
No 55
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.68 E-value=1.8 Score=34.71 Aligned_cols=45 Identities=7% Similarity=0.081 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 566 MCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 566 a~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
..||.++..++ +|+.+|++.+|++...+.++|..|...+ ++...+
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG---~I~~~~ 64 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSA---MVYSSD 64 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHT---SSEECS
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEeCC
Confidence 33444444544 9999999999999999999999998877 776653
No 56
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=81.67 E-value=1.1 Score=39.84 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=44.6
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.++|..|...+ ++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~g---li~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVD---LIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCC---CEEee
Confidence 477899999888877789999999999999999999999999887 77664
No 57
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=81.52 E-value=1.3 Score=39.56 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=43.3
Q ss_pred EEEeeHHHHHHHHHHhC-----CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 558 ELNVSTYQMCVLMLFNS-----IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 558 ~l~~s~~Qa~iLl~Fn~-----~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++-+|.-++.+|+++-. ....|.++|++.+|++..++.+.|+.|+..| +|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KG---lI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKG---FLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHT---SCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEE
Confidence 45678888888876543 3568999999999999999999999999988 6655
No 58
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=81.29 E-value=1.5 Score=39.53 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=44.7
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~g---lv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAG---LVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCC---CEeec
Confidence 477899999888877889999999999999999999999999888 77664
No 59
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=81.22 E-value=1.4 Score=33.96 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCC-CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 564 YQMCVLMLFNSI-DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 564 ~Qa~iLl~Fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
..-.||.++.+. ..+|..||++.+|++...+.+.|..|...+ ++..
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G---~I~~ 57 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKED---RVSS 57 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTT---SEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---cEec
Confidence 344577677553 569999999999999999999999999877 6543
No 60
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.19 E-value=1.5 Score=39.01 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=45.1
Q ss_pred eeHHHHHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..||..... .+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~g---lv~r~~ 84 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGG---LIVRHA 84 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCC---CEeeCC
Confidence 57889999988877 7889999999999999999999999999888 777653
No 61
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=81.15 E-value=1.2 Score=40.70 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=45.3
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+.+|..+|++.+|++...+.+.|..|...| ++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~G---lv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEG---LAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEeeC
Confidence 477899999888877789999999999999999999999999988 887654
No 62
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=80.93 E-value=1.6 Score=40.69 Aligned_cols=66 Identities=9% Similarity=0.193 Sum_probs=44.8
Q ss_pred cCcceEEEEEeeCCCceEEEEeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 540 TNMGTADLKGTFGKGQKHELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 540 ~~l~~~~i~~~~~~~~~~~l~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
|+.+++.+... ..-...++..+..||..+..+..+|+.||++.+|++...+.+.|..|...+ ++..
T Consensus 8 ~~~~~~~~~~~----~~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G---~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRG----SHMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG---VIKK 73 (171)
T ss_dssp --------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT---SSCC
T ss_pred ccccccccccc----cccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEe
Confidence 34455555322 122345688898999888888899999999999999999999999999887 7754
No 63
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=80.89 E-value=1.6 Score=38.43 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=44.2
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~g---lv~r~ 85 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRG---LIQRS 85 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTT---CEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEee
Confidence 477899999888777789999999999999999999999999887 77654
No 64
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=80.85 E-value=1.6 Score=40.25 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=44.1
Q ss_pred eeHHHHHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|+.||..... .+.+|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~G---lV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKG---LISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCC---CEEeeC
Confidence 46789999988776 6779999999999999999999999999988 887653
No 65
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=80.65 E-value=1.3 Score=40.83 Aligned_cols=50 Identities=8% Similarity=0.202 Sum_probs=44.7
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 43 lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G---lV~r~ 92 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAE---LIDRL 92 (168)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC---CEEec
Confidence 478899999888777789999999999999999999999999887 77664
No 66
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=80.63 E-value=1.3 Score=39.35 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=44.0
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|+.||......+.+|..+|++.+|++...+.+.+..|...+ ++...
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~g---li~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQG---FIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCC---CEEee
Confidence 467888899888777789999999999999999999999999887 77664
No 67
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=80.27 E-value=1.6 Score=39.14 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=44.3
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|...+ ++...
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G---lv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNG---LVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCC---Ceeec
Confidence 477899999888777789999999999999999999999999887 77654
No 68
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=80.10 E-value=1.6 Score=39.71 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=44.7
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~G---li~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADG---LVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC---CEEec
Confidence 477899999888877889999999999999999999999999887 77664
No 69
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.03 E-value=1.7 Score=39.22 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=44.2
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~G---li~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRG---LVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEee
Confidence 477899999888776789999999999999999999999999887 77664
No 70
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=79.89 E-value=1.1 Score=40.71 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=44.2
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+++|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G---lv~r~~ 98 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEG---YVFRQR 98 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEEec
Confidence 366788888887777889999999999999999999999999888 777653
No 71
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=79.53 E-value=2.5 Score=37.53 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=40.4
Q ss_pred eeHHHHHHHHHHh-CCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFN-SIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..+|..+. ..+++|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G---~v~r~~ 75 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELG---FVRKVW 75 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEEe
Confidence 3556666664443 34679999999999999999999999999988 887653
No 72
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=79.50 E-value=1.8 Score=38.40 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=44.5
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~g---lv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADG---YLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCC---Ceeec
Confidence 578899999888777789999999999999999999999999887 77664
No 73
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=79.41 E-value=2.2 Score=35.29 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=44.9
Q ss_pred EEeeHHHHHHHHHHhCCCCcCHHHHHH-HcCCChHHHHHHHHHhhhccCcceee
Q 004725 559 LNVSTYQMCVLMLFNSIDRLSYKEIEQ-ATEIPAPELKRCLQSLACVKGKHVLR 611 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~~~~~t~~ei~~-~t~i~~~~l~~~L~~L~~~k~~~iL~ 611 (733)
..++..|+.||......+..|..+|++ ..+++...+-+++.+|...+ ++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~G---lVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKG---LVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTT---SEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCC---Cee
Confidence 346889999998888777999999999 99999999999999999887 776
No 74
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=79.11 E-value=1.1 Score=40.31 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=37.9
Q ss_pred eeHHHHHHHHHHhCC--CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSI--DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||...... +.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G---lv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKG---YIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTT---SBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC---CEEeeC
Confidence 477899988777665 789999999999999999999999999988 777653
No 75
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=79.10 E-value=1.4 Score=39.80 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=45.0
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~g---lv~r~~ 85 (155)
T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKN---LIARTH 85 (155)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEeecC
Confidence 578899999888877789999999999999999999999999887 776643
No 76
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.05 E-value=1.4 Score=38.86 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=44.4
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~g---lv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDG---IVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCC---CEEee
Confidence 477899999888777789999999999999999999999999887 77654
No 77
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=78.83 E-value=1.8 Score=36.81 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=40.0
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+..+..||..+ ..+.+|+.+|++.+|++...+.++|..|...+ ++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~g---li~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACG---LVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeeEE
Confidence 45677777777 44569999999999999999999999999887 77654
No 78
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=78.67 E-value=1.5 Score=39.06 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=44.9
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..||......+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~g---lv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQG---LITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHT---SEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCC---CEEecc
Confidence 477899999888777789999999999999999999999999987 777653
No 79
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=78.66 E-value=1.6 Score=36.00 Aligned_cols=48 Identities=6% Similarity=0.283 Sum_probs=41.1
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++.+..||..+...+.+|+.+|++.+|++...+.++|..|...+ ++..
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~g---li~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNG---LVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEE
Confidence 56778888777655689999999999999999999999999887 7764
No 80
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=78.59 E-value=2.3 Score=35.87 Aligned_cols=48 Identities=13% Similarity=0.282 Sum_probs=39.3
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+..+..||..+. .+.+|+.+|++.+|++...+.++|..|...+ ++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~G---lv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVH---LVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEEE
Confidence 455666776665 4578999999999999999999999999877 77654
No 81
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=77.92 E-value=1.6 Score=38.75 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=44.0
Q ss_pred EeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 560 NVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+|+.|..||.....++. |..+|++.+|++...+.+.+..|...+ ++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~G---lv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKG---LVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCC---CEEec
Confidence 357889999988887777 999999999999999999999999987 77664
No 82
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=77.91 E-value=1.7 Score=39.37 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=44.7
Q ss_pred eeHHHHHHHHHH-hCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLF-NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~F-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..||... ...+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~G---li~r~~ 96 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDG---MVVKAM 96 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHT---SEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCC---CEEeec
Confidence 578899999888 577789999999999999999999999999988 887653
No 83
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=77.65 E-value=2.2 Score=38.22 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=42.3
Q ss_pred eeHHHHHHHHHHh-CCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFN-SIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||.... ..+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~G---lv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERG---LVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTT---SEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCC---CEEeeC
Confidence 4678999998775 44578999999999999999999999999887 887653
No 84
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=77.57 E-value=3.1 Score=37.46 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=42.1
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
+..+..||..+.++..+|+.+|++.+|++...+.+.|..|...+ ++..
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G---~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDG---VIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT---SSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---cEEE
Confidence 34677788888888889999999999999999999999999888 7764
No 85
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=77.24 E-value=3.7 Score=37.06 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=43.7
Q ss_pred eeHHHHHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|+.||..... .+..+..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~G---lV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKG---LITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCC---CeEeec
Confidence 57889999987764 5668889999999999999999999999988 777654
No 86
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=77.15 E-value=1.8 Score=38.84 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=43.5
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
+|..|..||... ..+++|..+|++.+|++...+.+.+..|...| ++.+
T Consensus 36 lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~G---lv~r 83 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAE---LVKL 83 (151)
T ss_dssp CCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTT---SEEC
T ss_pred CCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEe
Confidence 478899999888 77889999999999999999999999999888 7775
No 87
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=77.06 E-value=2.1 Score=40.35 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=44.4
Q ss_pred eeHHHHHHHHHHhC--CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNS--IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||..... .+++|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G---lV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNG---YVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEecc
Confidence 68899999987764 5689999999999999999999999999988 787653
No 88
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=77.06 E-value=6 Score=36.18 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=42.1
Q ss_pred HHHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeeccc
Q 004725 565 QMCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDK 630 (733)
Q Consensus 565 Qa~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~ 630 (733)
.+.+.+.-+. ...+|.++|++.+|+|...+.+.|..|..++ ++..... +++-|.+..+
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aG---lv~s~rG-----~~GGy~Lar~ 89 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAG---IVKSIRG-----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEECS-----TTCEEEECSC
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---eEEEecC-----CCCceEecCC
Confidence 4444444443 3469999999999999999999999999888 7764421 2456766553
No 89
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=76.99 E-value=2.9 Score=37.64 Aligned_cols=49 Identities=8% Similarity=0.158 Sum_probs=42.9
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++..+..||..+.+++.+|+.+|++.+|++...+.+.|..|...+ ++..
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G---~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRG---VVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEE
Confidence 466788888888877889999999999999999999999999887 7754
No 90
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=76.90 E-value=1.5 Score=35.01 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=43.1
Q ss_pred hheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeec
Q 004725 670 AAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYL 732 (733)
Q Consensus 670 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yv 732 (733)
..|.+++-....++..+|...+... -..+...+...|+.|.++|||+|..+++ .+.|-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~gr-~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKEGR-VFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEecCC-EEEEE
Confidence 3445555556788999998776542 2357889999999999999999987543 57774
No 91
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=76.70 E-value=1.9 Score=38.76 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=42.4
Q ss_pred eeHHHHHHHHHH--hCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLF--NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||... +.++.+|..+|++.++++...+.+.+..|...+ ++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~G---lv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSG---LVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCC---CEEEee
Confidence 467788777655 445679999999999999999999999999988 787654
No 92
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=75.53 E-value=6.1 Score=35.37 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHhCC-CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecc
Q 004725 565 QMCVLMLFNSI-DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFND 629 (733)
Q Consensus 565 Qa~iLl~Fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~ 629 (733)
.+.+.+.-+.. ..+|..+|++.+|+|...+.+.|..|..++ ++..... +++-|.+..
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aG---lv~s~rG-----~~GGy~Lar 72 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAG---LIRSVRG-----AKGGYQLRV 72 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEECSS-----SSSEEEESS
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---EEEecCC-----CCCCeeecC
Confidence 33333443433 469999999999999999999999999888 7764321 245676654
No 93
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=75.46 E-value=1.8 Score=36.67 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+..||..+.+ +.+|+.||++.+|++...+.++|..|...+ ++...
T Consensus 26 ~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~G---lV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGG---LVEAR 71 (108)
T ss_dssp TTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHT---SEEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEEE
Confidence 34456666654 678999999999999999999999999888 88654
No 94
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=75.35 E-value=4.4 Score=37.23 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+.+.+.+.-+....+|.++|++.+|+|...+.+.|..|..++ ++...
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aG---lv~s~ 61 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHG---YLTGT 61 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTT---SSEEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEee
Confidence 344444555555679999999999999999999999999888 76543
No 95
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=75.24 E-value=2.1 Score=41.05 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=45.2
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+.+|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~G---lV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERG---YLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHT---SEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEEec
Confidence 478899999888777789999999999999999999999999988 787654
No 96
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=75.03 E-value=3.6 Score=36.75 Aligned_cols=49 Identities=12% Similarity=0.362 Sum_probs=42.1
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++..+-.||..+.++..+|+.+|++.+|++...+.+.|..|...+ ++..
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G---~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFG---IIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEE
Confidence 355677788888777889999999999999999999999999887 7764
No 97
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=74.91 E-value=3 Score=46.36 Aligned_cols=129 Identities=11% Similarity=0.067 Sum_probs=85.6
Q ss_pred CCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccCcCCcceEEeccccccCCCchhh
Q 004725 574 SIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPEN 653 (733)
Q Consensus 574 ~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f~~~~~ki~i~~~~~~~~~~~e~ 653 (733)
..+.+|+.+|...|+++...++.+|..|+..+ ++...+.+. ....|.+|.+= -..+++.|.
T Consensus 30 ~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~---lV~~~~~~~---~~~~Y~~~~~~--il~~lR~pk----------- 90 (534)
T 2xub_A 30 RTGSQPLRVIAHDTGTSLDQVKKALCVLVQHN---LVSYQVHKR---GVVEYEAQCSR--VLRMLRYPR----------- 90 (534)
T ss_dssp HHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEEETT---TEEEEEECHHH--HHGGGGHHH-----------
T ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcC---CeeEEeCCC---CcEEEEEChhh--HHHHHhhHH-----------
Confidence 35789999999999999999999999999987 776543210 12345555320 011121111
Q ss_pred HHHHHHHHhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccC----CCCChHHHHHHHHHhhhhhcccccCC
Q 004725 654 QETRQRVEEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSR----FLPNPVVIKKRIESLIEREFLERDKV 724 (733)
Q Consensus 654 ~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~----F~~~~~~ik~~Ie~LIereyi~rd~~ 724 (733)
. -...+.+--..-|.|+-.+=..+.++.++|+..+...+... =.++...+...+..|++.+||.|.+.
T Consensus 91 --~-l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 91 --Y-IYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp --H-HHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred --H-HHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 0 01111222223366777777789999999999888765321 12578899999999999999999763
No 98
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=74.83 E-value=3.2 Score=32.51 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 569 LMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 569 Ll~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+..+.+++..|..+|+.++|++...+.++|-+|...+ .+...|
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG---~V~~~~ 63 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKED---TVKMVP 63 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCC---CEecCC
Confidence 4466677779999999999999999999999998876 565554
No 99
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=74.13 E-value=2.8 Score=37.19 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=41.7
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+..+..||..+..++.+++.+|++.+|++...+.+.|+.|...+ ++...
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G---~i~~~ 51 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKG---IIEGY 51 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT---SSCCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEecc
Confidence 44677788888777789999999999999999999999999887 77543
No 100
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=73.53 E-value=4 Score=35.11 Aligned_cols=49 Identities=6% Similarity=0.023 Sum_probs=40.4
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++.+..||..+.+ +..++.+|++.+|++...+.++|..|...+ ++....
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~~~G---lV~~~~ 68 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCG---LVVATY 68 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTTTT---SEEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---ceEEEE
Confidence 5567777776664 468999999999999999999999999877 776543
No 101
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=73.38 E-value=8.1 Score=33.65 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=36.7
Q ss_pred CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeeccc
Q 004725 575 IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDK 630 (733)
Q Consensus 575 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~ 630 (733)
...+|..+|++.+|+|...+.+.|..|...+ ++...+. .++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~G---lv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAG---LVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT---SEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCC---ceEecCC-----CCCceEeCCC
Confidence 4579999999999999999999999999888 8765421 2355666554
No 102
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=73.30 E-value=3 Score=41.20 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=43.9
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++..|..||..+...+.+|..||++.+|++...+.+.|..|...+ ++.+.
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~G---lV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFG---ILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEe
Confidence 467888999887766789999999999999999999999999887 77664
No 103
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=72.95 E-value=4.1 Score=36.65 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=42.8
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++..+..||..+.++..+|+.+|++.+|++...+.+.+..|...+ ++..
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G---~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLG---IIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT---SEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEE
Confidence 456677888888888899999999999999999999999999887 7754
No 104
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=72.85 E-value=4 Score=36.80 Aligned_cols=49 Identities=8% Similarity=0.196 Sum_probs=42.9
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++..+..||..+.++..+|+.+|++.+|++...+.+.|..|...+ ++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G---~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAG---IITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHT---SEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcC---Ccce
Confidence 456777888888888899999999999999999999999999887 7764
No 105
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.73 E-value=4.2 Score=33.65 Aligned_cols=51 Identities=12% Similarity=0.287 Sum_probs=44.4
Q ss_pred EeeHHHHHHHHHHhC--CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 560 NVSTYQMCVLMLFNS--IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.++..|..|+-+..+ +++++..+|...++++...+.++|..|...+ ++...
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~---lIK~V 86 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKK---LIKAV 86 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHT---SEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCC---CEEEe
Confidence 458899999988876 6679999999999999999999999999877 77654
No 106
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=72.43 E-value=2.6 Score=36.49 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=44.5
Q ss_pred EeeHHHHHHHHHHhCCCCcCHHHHHHHcC----CChHHHHHHHHHhhhccCcceeecc
Q 004725 560 NVSTYQMCVLMLFNSIDRLSYKEIEQATE----IPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+|..|..||...-+.+++|..+|++.++ ++...+...|..|...| ++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kG---lv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKE---IIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCC---ceEEE
Confidence 46889999998887778899999999997 57899999999999988 88765
No 107
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=71.98 E-value=4.3 Score=37.63 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=43.9
Q ss_pred EEeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 559 LNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
..++..+..||.....+..+|+.+|++.+|++...+.+.|..|...+ ++..
T Consensus 13 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G---~I~~ 63 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERG---VIER 63 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEe
Confidence 44577888888888887889999999999999999999999999887 7754
No 108
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=71.59 E-value=4.6 Score=33.50 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=42.3
Q ss_pred eeHHHHHHHHHHhCC------CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSI------DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
+++.|..+|..+... ..++..+|++.++++...+.++|..|...+ ++..
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~G---LV~r 68 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAG---LADV 68 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCC---CEEe
Confidence 688999998866543 679999999999999999999999999887 6654
No 109
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=71.48 E-value=8.4 Score=29.66 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccCc
Q 004725 565 QMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFT 632 (733)
Q Consensus 565 Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f~ 632 (733)
.-.|.-+|.++..+|+.+|.+.|+=|+..|+.+|..++ ++.+.++ -.+.+.+-+.|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia------~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG------VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC------CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH------HHHcCCC-----CCCeeeCcHHHh
Confidence 44577889999999999999999999999999999875 4544432 235566655553
No 110
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=71.41 E-value=5 Score=35.56 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=44.1
Q ss_pred eeHHHHHHHHHHhC-CCCcCHHHHHHHcC----CChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNS-IDRLSYKEIEQATE----IPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~-~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+|..|..||..+-+ .+.+|..+|++.++ ++...+.+.|..|...+ ++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kG---lv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKN---LVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCC---CEEEE
Confidence 57889999988877 57899999999998 78999999999999988 88765
No 111
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=71.39 E-value=5 Score=39.44 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=44.6
Q ss_pred HHHHHHHhCCC-CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeeccc
Q 004725 566 MCVLMLFNSID-RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDK 630 (733)
Q Consensus 566 a~iLl~Fn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~ 630 (733)
..||..|.+.+ .+|+.||++.+|++...+.+.|..|...+ ++.+.+. +..|.+...
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G---~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEF---LVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTT---SEEECGG------GCEEEECSH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEeCC------CCeEEECHH
Confidence 35777887654 79999999999999999999999999888 8877542 356766544
No 112
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=71.39 E-value=4.2 Score=36.68 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=42.7
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++..+..||..+..+..+|+.+|++.+|++...+.+.|..|...+ ++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G---~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG---VIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHT---SSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEE
Confidence 456777888888877889999999999999999999999999887 7754
No 113
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=70.95 E-value=2.5 Score=38.78 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=40.8
Q ss_pred eeHHHHHHHHHHhC--CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNS--IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||..... .+.+|..+|++.+|++...+.+.+..|...+ ++.+.+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G---lv~r~~ 96 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRG---LVLRTR 96 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTT---SEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC---CEeecC
Confidence 47788888877766 4589999999999999999999999999888 887653
No 114
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=70.65 E-value=7 Score=35.20 Aligned_cols=58 Identities=3% Similarity=-0.031 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeeccc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDK 630 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~ 630 (733)
+.+.+.+.-+....+|..+|++.+|+|...+.+.|..|...+ ++..... ++-|.+..+
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~G---lv~s~rG------~GGy~L~~~ 74 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAG---FVYVNRG------PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEEC---------CCEEESSC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---cEEEccC------CCceEeCCC
Confidence 344444444444569999999999999999999999999888 8765321 345665544
No 115
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=69.91 E-value=5.4 Score=36.38 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=42.6
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
++..+..||..+.++..+|+.+|++.+|++...+.+.|..|...+ ++..
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G---~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAG---IVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEee
Confidence 456777888888877889999999999999999999999999887 7764
No 116
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=69.84 E-value=3.6 Score=41.01 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=46.0
Q ss_pred HHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccC
Q 004725 566 MCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKF 631 (733)
Q Consensus 566 a~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f 631 (733)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|...+ ++.+.+. +..|.+-..+
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G---~v~~~~~------~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAG---FVEQVEG------ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTT---SEEECSS------SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEcCC------CCcEEcCHHH
Confidence 347778886 4679999999999999999999999999988 8887653 3567665543
No 117
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=69.64 E-value=2.4 Score=36.52 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=44.3
Q ss_pred EeeHHHHHHHHHHhCCCCcCHHHHHHHcC----CChHHHHHHHHHhhhccCcceeecc
Q 004725 560 NVSTYQMCVLMLFNSIDRLSYKEIEQATE----IPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+|..|..||......+.+|..+|++.++ ++...+.+.|..|...+ ++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~G---lv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKG---FIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHT---SEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCC---CeEEE
Confidence 35788999998877677899999999999 78999999999999988 77664
No 118
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=69.12 E-value=4.5 Score=34.75 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=39.8
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++....||.++.+ +.+++.+|++.+|++...+.++|..|...+ ++....
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~~~G---lV~~~~ 65 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLEDSG---WIRTHK 65 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCC---CeEEEe
Confidence 4455667766664 678999999999999999999999999888 886543
No 119
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=68.53 E-value=5.1 Score=34.31 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=39.5
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
+..|..||..+.+ +..|+.+|++.+|++...+.++|..|...+ ++..
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~G---lv~~ 77 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLG---LVVG 77 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHC---SEEE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEE
Confidence 4567778877766 679999999999999999999999998866 6654
No 120
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=67.98 E-value=6.4 Score=35.30 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred eeHHHHHHHHHHhCC-----CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceee
Q 004725 561 VSTYQMCVLMLFNSI-----DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLR 611 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~-----~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~ 611 (733)
+|..|..||...... +.+|..+|++.+|++...+.+.+..|...+ ++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~g---lVr 83 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDG---LVR 83 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTT---SBC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC---CEE
Confidence 477899998777653 358999999999999999999999998876 664
No 121
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=67.88 E-value=7.5 Score=33.66 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 563 TYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 563 ~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+.+..||..+.+ +..++.+|++.+|++...+.++|..|...+ ++...
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~G---lv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLR---LVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CeEEE
Confidence 345566666654 578999999999999999999999999877 66543
No 122
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=67.75 E-value=4.8 Score=32.93 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCC-CcCHHHHHHHcCCChHH-HHHHHHHhhhccCcceee
Q 004725 564 YQMCVLMLFNSID-RLSYKEIEQATEIPAPE-LKRCLQSLACVKGKHVLR 611 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~-~~t~~ei~~~t~i~~~~-l~~~L~~L~~~k~~~iL~ 611 (733)
-+..+|..+...+ .+|..+|++.+|++... +.+.|..|...+ ++.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~G---lv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAG---LVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTT---SEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCC---Cee
Confidence 3455666666655 79999999999999999 999999999877 665
No 123
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=67.69 E-value=4.8 Score=40.50 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=37.9
Q ss_pred HHHHHHHhCC-CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 566 MCVLMLFNSI-DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 566 a~iLl~Fn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
..||.+|.+. ..+|+.||++.+|+|...+.+.|..|...+ .|.+.+
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G---~v~~~~ 79 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELD---LLARSA 79 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTT---SEEECT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEECC
Confidence 3478888865 469999999999999999999999999988 888764
No 124
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=67.33 E-value=1.5 Score=36.71 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=43.3
Q ss_pred EeeHHHHHHHHHHhCCCCcCHHHHHHHcCC----ChHHHHHHHHHhhhccCcceeeccC
Q 004725 560 NVSTYQMCVLMLFNSIDRLSYKEIEQATEI----PAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i----~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
.+|..|..||..+-+.+.+|..||++.++. +...+.+.|..|...+ ++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KG---lV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKE---MLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTT---SCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCC---CEEEEe
Confidence 457788888877776778999999999974 5789999999999988 787654
No 125
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=66.47 E-value=3.6 Score=34.35 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=43.2
Q ss_pred hhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeecC
Q 004725 669 EAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYLA 733 (733)
Q Consensus 669 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yva 733 (733)
+..|++++-....++..+|.+.+.. .-.++...|...|+.|.++|+|+|..+. ..|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~g-R~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKEG-RKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEET-TEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeCC-CEEEEEE
Confidence 4455566655667888777654432 1245788999999999999999998654 4788865
No 126
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.04 E-value=3 Score=33.19 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=36.8
Q ss_pred heehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhccccc
Q 004725 671 AIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERD 722 (733)
Q Consensus 671 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd 722 (733)
.|...++.++.++.++|. ..|..+...|.+-|+.|.++|+|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa--------~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQIS--------QTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHH--------HHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 456667778888887764 24899999999999999999999997
No 127
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=65.68 E-value=6.3 Score=31.27 Aligned_cols=59 Identities=3% Similarity=0.088 Sum_probs=43.8
Q ss_pred hheehhcccC--CCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceee
Q 004725 670 AAIVRIMKAR--RVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRY 731 (733)
Q Consensus 670 A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Y 731 (733)
..|...+... +.++..+|...+.+.. ...+...|-+.++.|.+.|+|.|...+.+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 3455666554 6899999998776542 356889999999999999999997654344444
No 128
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=65.35 E-value=6.7 Score=33.03 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHH-HhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 568 VLML-FNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 568 iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
||.. +..++.+|..+|++.+|++...+.++|..|...| ++...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G---lV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQG---FVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHT---SCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEE
Confidence 4433 3455579999999999999999999999999888 77654
No 129
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=64.14 E-value=9.8 Score=37.46 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=43.5
Q ss_pred HHHHHHHhCCC-CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeeccc
Q 004725 566 MCVLMLFNSID-RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDK 630 (733)
Q Consensus 566 a~iLl~Fn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~ 630 (733)
..||..|.+.+ .+|+.||++.+|++...+.+.|..|...+ ++.+. .+..|.+...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G---~v~~~-------~~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG---FVLRK-------KDKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT---SEEEC-------TTSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---cEEEC-------CCCcEEECHH
Confidence 45777787654 79999999999999999999999999888 77764 1355666543
No 130
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=63.61 E-value=9.6 Score=34.73 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
....||.....+..+|+.+|++.+|++...+.+.++.|...+ ++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g---~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDG---VIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT---SSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---Ceee
Confidence 345678888888899999999999999999999999999887 7653
No 131
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=63.41 E-value=5.9 Score=35.14 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.7
Q ss_pred HhccCCCCChHHHHHHHHHhhhhhcccc
Q 004725 694 QLQSRFLPNPVVIKKRIESLIEREFLER 721 (733)
Q Consensus 694 ~l~~~F~~~~~~ik~~Ie~LIereyi~r 721 (733)
.+..+...++..|.+.|..|+++|||++
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3445678899999999999999999999
No 132
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=63.18 E-value=7.1 Score=38.62 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=44.1
Q ss_pred eeHHHHHHHHHHhCCC--CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSID--RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|..|..||......+ .+|..+|++.++++...+.+.+..|...| ++.+.+
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~G---lV~R~~ 208 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQG---YLIKER 208 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHT---SSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC---CEEeeC
Confidence 4789999998876654 59999999999999999999999999988 777654
No 133
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=62.99 E-value=9.7 Score=34.02 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 565 QMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 565 Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+.+.+.-+.. . |.++|++.+++|...+.+.|..|..++ ++...
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aG---lv~s~ 56 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKAD---ILTSR 56 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTT---SEECC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCC---ceEee
Confidence 34444444444 5 999999999999999999999999888 88654
No 134
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=62.46 E-value=8.8 Score=32.72 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=43.0
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHc--CCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQAT--EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t--~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+....-.||.+..+.+.+|+.+|++.+ |++...+.++|..|...+ ++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~G---LV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHD---LLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTT---SEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCC---CEEec
Confidence 455677788888776789999999999 999999999999999988 88764
No 135
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=62.32 E-value=5.8 Score=39.26 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=45.2
Q ss_pred EeeHHHHHHHHHHhC--CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 560 NVSTYQMCVLMLFNS--IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
.+|..|..||....+ .+++|..+|++.++++...+.+.|..|...+ ++.+.+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G---~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHS---YISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTT---SCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCC---CEEecC
Confidence 468899999988876 3589999999999999999999999999888 777654
No 136
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=60.94 E-value=13 Score=28.25 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
+|.-|..|+.++ ..+.|..||++.+|++...+...+..+..
T Consensus 12 L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 12 LTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577788888777 45679999999999999999888876543
No 137
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=60.64 E-value=11 Score=27.90 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHc-----CCChHHHHHHHHHh
Q 004725 565 QMCVLMLFNSIDRLSYKEIEQAT-----EIPAPELKRCLQSL 601 (733)
Q Consensus 565 Qa~iLl~Fn~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L 601 (733)
++.|+.+.+.++.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44555566767789999999999 99999999999843
No 138
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=60.04 E-value=4.2 Score=37.80 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=43.1
Q ss_pred eeHHHHHHHHHHhCCC---CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNSID---RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++..|..||......+ .+|..+|++.+|++...+.+.|..|...+ ++.+.+
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G---lV~r~~ 120 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKG---LIERRE 120 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHT---SEECCC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCc---CEEecC
Confidence 4778998887776544 39999999999999999999999999888 777653
No 139
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=60.04 E-value=3.4 Score=35.76 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=42.2
Q ss_pred hhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeec
Q 004725 669 EAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYL 732 (733)
Q Consensus 669 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yv 732 (733)
+..|.+++-....++..+|...+.. ...++...+...|+.|.++|||+|..+++ .+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r-~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKSEN-IYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeCCC-eEEEE
Confidence 3445555555677888888765532 13457889999999999999999987544 56664
No 140
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=59.68 E-value=6.3 Score=32.39 Aligned_cols=55 Identities=9% Similarity=0.147 Sum_probs=39.3
Q ss_pred heehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcce
Q 004725 671 AIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLY 729 (733)
Q Consensus 671 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y 729 (733)
.|...+.....++..+|...+.+ .+..+...+-+.|..|.++|||+|..+.+..+
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~----~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~ 66 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNA----EFPMSTATFYDAKKFLIQEGFVKERQERGEKR 66 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHHH----HcCCCHHHHHHHHHHHHHCCCEEEEecCCceE
Confidence 34444455677887777654433 46779999999999999999999976544333
No 141
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=59.18 E-value=14 Score=29.27 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=33.6
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
+|.-|..|+.++ ..++|..||++.+|++...++..+.....
T Consensus 22 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 22 LTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 577788888776 35689999999999999999988876543
No 142
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=58.54 E-value=14 Score=30.86 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHc-CCChHHHHHHHHHhhhccCcceeecc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQAT-EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
....||.... .+..++.||++.+ |++...+.+.|..|...+ ++.+.
T Consensus 15 ~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~G---lI~r~ 61 (107)
T 2hzt_A 15 WKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADG---VINRI 61 (107)
T ss_dssp THHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC---CEEEe
Confidence 3445665544 4679999999999 999999999999999988 88764
No 143
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=58.18 E-value=13 Score=32.61 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=39.3
Q ss_pred EeeHHHHHHHHHH----hCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 560 NVSTYQMCVLMLF----NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 560 ~~s~~Qa~iLl~F----n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.++..|.-+|..+ ..++.+|..+|++.+|++...+.++|..|...+ ++.+.
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~G---li~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKG---LVKKK 64 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCC---CEEec
Confidence 4455666555443 245689999999999999999999999999877 77653
No 144
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=58.04 E-value=10 Score=37.61 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=43.4
Q ss_pred HHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeeccc
Q 004725 567 CVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDK 630 (733)
Q Consensus 567 ~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~ 630 (733)
.||.+|.. ...+|+.||++.+|++...+.+.|..|...+ ++.+.+ ++.|.+...
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G---~v~~~~-------~~~Y~lg~~ 81 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARS---VLTSRA-------DGSYSLGPE 81 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTT---SEEECT-------TSCEEECHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEECC-------CCeEEecHH
Confidence 46777764 5689999999999999999999999999988 887754 226776554
No 145
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=57.93 E-value=6.6 Score=32.15 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=36.8
Q ss_pred eeHHHHHHHHHHh-CCCC---cCHHHHHHHcCCChHHHHHHHHHhhhccCccee
Q 004725 561 VSTYQMCVLMLFN-SIDR---LSYKEIEQATEIPAPELKRCLQSLACVKGKHVL 610 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn-~~~~---~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL 610 (733)
++.-+..||+.+- ..+. +|..+|++.+|++...+.+.|..|...+ ++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~G---lv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAK---MV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTT---SE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCc---Cc
Confidence 3556666666553 2233 9999999999999999999999999877 66
No 146
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=57.87 E-value=8.2 Score=34.07 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 571 LFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 571 ~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+....+.+|..+|++.+|++...+.+.|..|...+ ++.+.
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~G---lv~r~ 55 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDE---YLIYE 55 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC---CEEEe
Confidence 34445679999999999999999999999999877 77664
No 147
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=57.15 E-value=13 Score=36.73 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=44.2
Q ss_pred HHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccC
Q 004725 566 MCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKF 631 (733)
Q Consensus 566 a~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f 631 (733)
..||..|.. ...+|+.||++.+|++...+.+.|..|...+ ++.+. +..|.+...+
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G---~v~~~--------~~~Y~Lg~~~ 72 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLG---YVAGS--------GGRWSLTPRV 72 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE--------TTEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEeC--------CCEEEEcHHH
Confidence 457778875 4679999999999999999999999999888 77764 2567766543
No 148
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=57.14 E-value=7.6 Score=42.30 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=46.3
Q ss_pred EeeHHHHHHHHHHhCC--CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 560 NVSTYQMCVLMLFNSI--DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
.+|..|..||....++ +.+|..+|++.++++...+.+.|..|...+ ++.+.+
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g---~v~r~~ 454 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLK---LLSKKR 454 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTT---TSCCEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEeecC
Confidence 4688999999998887 889999999999999999999999999887 777653
No 149
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=56.95 E-value=8.1 Score=34.93 Aligned_cols=48 Identities=6% Similarity=0.101 Sum_probs=40.6
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
++....||.... .+.+|+.+|++.+|++...+.++|..|...+ ++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aG---lV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAG---LVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEE
Confidence 456777887776 4679999999999999999999999999888 77654
No 150
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=56.91 E-value=15 Score=31.08 Aligned_cols=48 Identities=15% Similarity=0.355 Sum_probs=38.1
Q ss_pred eHHHHHHHHHHhCCCCcC--HHHHHHHc-CCChHHHHHHHHHhhhccCcceeecc
Q 004725 562 STYQMCVLMLFNSIDRLS--YKEIEQAT-EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t--~~ei~~~t-~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
......||....+ +..+ +.||++.+ |++...+.++|..|...+ ++.+.
T Consensus 26 ~~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G---lV~r~ 76 (111)
T 3df8_A 26 KKYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSG---LVERR 76 (111)
T ss_dssp STTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCC---CEEEe
Confidence 3445566665553 4555 99999999 999999999999999988 88764
No 151
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=56.25 E-value=9.3 Score=30.98 Aligned_cols=45 Identities=9% Similarity=0.150 Sum_probs=36.3
Q ss_pred heehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccC
Q 004725 671 AIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDK 723 (733)
Q Consensus 671 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~ 723 (733)
.|...++.++.++.++|. ..|..+...|.+-|+.|.++|+|+|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA--------~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLS--------ARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHH--------HHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 355666777777776664 348999999999999999999999973
No 152
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=56.24 E-value=12 Score=37.31 Aligned_cols=55 Identities=18% Similarity=0.408 Sum_probs=44.1
Q ss_pred HHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccC
Q 004725 566 MCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKF 631 (733)
Q Consensus 566 a~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f 631 (733)
..||.+|.. ...+|+.||++.+|++...+.+.|..|...+ ++.+. +..|.+...+
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G---~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELG---YVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHT---SEEES--------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEec--------CCEEEEcHHH
Confidence 357777875 5679999999999999999999999999888 77764 3567765543
No 153
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=56.08 E-value=16 Score=34.39 Aligned_cols=49 Identities=6% Similarity=0.164 Sum_probs=41.1
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+..+..||.+..+ +.+|..+|++.+|++...+.+.|..|...| ++...
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le~~G---lI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLKEAG---LVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEE
Confidence 35567777777764 689999999999999999999999999887 77664
No 154
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.95 E-value=17 Score=29.45 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=36.0
Q ss_pred EEEeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 558 ELNVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 558 ~l~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
...+|.-|..||.++- .++|..||++.+|++...++.++..+..
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456888888887776 4689999999999999999999887754
No 155
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=54.81 E-value=13 Score=35.33 Aligned_cols=65 Identities=8% Similarity=0.090 Sum_probs=46.8
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCC-CCCCCCCeEeeccc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMS-KDIAEDDAFFFNDK 630 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~-~~~~~~~~f~~N~~ 630 (733)
++.+..||.+..+ +.+++.+|++.+|++...+..+|..|...+ ++...... ..-.+.-.|.++..
T Consensus 14 ~~~rl~IL~~L~~-~~~s~~eLa~~l~is~stvs~hLk~Le~~G---LV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 14 NETRRRILFLLTK-RPYFVSELSRELGVGQKAVLEHLRILEEAG---LIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp SHHHHHHHHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEECCBTTBCCCEEEEECTT
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---ceEEEeeccCCCCceEEEEEChH
Confidence 4567777766654 579999999999999999999999999988 88764321 11122345666554
No 156
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=54.40 E-value=13 Score=31.50 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=38.6
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHc-CCChHHHHHHHHHhhhccCcceeecc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQAT-EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
......||....+ +.+++.+|++.+ |++...+.++|..|...+ ++.+.
T Consensus 21 ~~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G---lI~r~ 69 (112)
T 1z7u_A 21 GKWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDG---LVHRE 69 (112)
T ss_dssp STTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT---SEEEE
T ss_pred CccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC---CEEEe
Confidence 3345566655444 579999999999 999999999999999988 88764
No 157
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=54.14 E-value=18 Score=31.80 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHc-CCChHHHHHHHHHhhhccCcceeecc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQAT-EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
..+.||.... .+..++.||++.+ |++...|.+.|..|...+ ++.+.
T Consensus 27 W~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~G---LV~R~ 73 (131)
T 4a5n_A 27 WKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADG---IVHRE 73 (131)
T ss_dssp SHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCC---CEEEE
Confidence 4456665554 5689999999999 999999999999999988 88765
No 158
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=53.88 E-value=19 Score=27.90 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=32.6
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
+|.-|..|+.++ ..++|..||++.+|++...+...+.....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356677777776 45789999999999999999888776543
No 159
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=52.91 E-value=16 Score=29.88 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=34.0
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
+|.-|..|+.++ ..++|..||++.+|++...++..+.....
T Consensus 28 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 28 LTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 577888888777 45789999999999999999888876654
No 160
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=50.22 E-value=32 Score=28.11 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 566 MCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 566 a~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+.||..... + ++..+|+..+|+++..+...+..|...+ ++.+.
T Consensus 11 ~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~~G---LI~~~ 53 (95)
T 1r7j_A 11 QAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMDLE---IIRQE 53 (95)
T ss_dssp HHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred HHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHHCC---CeEEE
Confidence 456655554 3 8999999999999999999999999888 77664
No 161
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=50.08 E-value=9.6 Score=32.97 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=37.5
Q ss_pred hhhhheehhcccCCC--CChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhccccc
Q 004725 667 QIEAAIVRIMKARRV--LDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERD 722 (733)
Q Consensus 667 ~i~A~IVRimK~~k~--l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd 722 (733)
..+..|.+++..... ++..+|-..+ ..+...+-+.|+.|.++|||.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEee
Confidence 446677777776655 8888886544 25889999999999999999985
No 162
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=49.89 E-value=23 Score=31.57 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+-..||.... .+..++.||++.+|++...+.+.|..|...+ ++.+.+
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~G---lI~r~~ 71 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHG---VMVAVP 71 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC---CEEEEe
Confidence 4444554433 3579999999999999999999999999988 887654
No 163
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=49.27 E-value=7.2 Score=34.49 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=41.0
Q ss_pred hhheehhccc-CCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeec
Q 004725 669 EAAIVRIMKA-RRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYL 732 (733)
Q Consensus 669 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yv 732 (733)
+..|++++-. ...++..+|...+... -..+...|...|+.|.++|||+|..+++ .+.|.
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~r~~~~r-~~~~~ 70 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSAR----RDLAYTTVMAVLQRLAKKNLVLQIRDDR-AHRYA 70 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTT----CCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcc----CCCCHHHHHHHHHHHHHCCCEEEEecCC-eEEEE
Confidence 4455666655 4778888887655321 2457889999999999999999987544 56663
No 164
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=47.82 E-value=21 Score=31.19 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=38.8
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHc-CCChHHHHHHHHHhhhccCcceeecc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQAT-EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
..+...||.... .+.+++.+|++.+ |++...+.++|..|...+ ++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~G---lV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDG---FLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHT---CEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCC---cEEEE
Confidence 445555665555 4679999999999 799999999999999988 88764
No 165
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=47.07 E-value=8.3 Score=32.99 Aligned_cols=56 Identities=25% Similarity=0.489 Sum_probs=40.7
Q ss_pred eehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceeec
Q 004725 672 IVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRYL 732 (733)
Q Consensus 672 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Yv 732 (733)
|..++...+.++..+|...+... ...+...+...|+.|.++|||+|..+|+ .+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~r-r~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDNK-IFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEETT-EEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecCC-eEEEE
Confidence 34444446788888888766543 3357889999999999999999987653 45554
No 166
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=46.90 E-value=23 Score=29.50 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHc-CCChHHHHHHHHHhhhccCcceeecc
Q 004725 565 QMCVLMLFNSIDRLSYKEIEQAT-EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 565 Qa~iLl~Fn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
-..||.... .+.+++.||++.+ |++...+.++|..|...+ ++.+.
T Consensus 27 ~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G---lV~r~ 72 (107)
T 2fsw_A 27 TLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKG---LIKKK 72 (107)
T ss_dssp HHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred HHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCC---CEEEe
Confidence 344554444 4679999999999 599999999999999888 88764
No 167
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=46.35 E-value=11 Score=32.79 Aligned_cols=27 Identities=7% Similarity=0.241 Sum_probs=23.6
Q ss_pred cCCCCChHHHHHHHHHhhhhhcccccC
Q 004725 697 SRFLPNPVVIKKRIESLIEREFLERDK 723 (733)
Q Consensus 697 ~~F~~~~~~ik~~Ie~LIereyi~rd~ 723 (733)
.+...+...|.++|..|+++|||+|..
T Consensus 59 ~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 59 ERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356778999999999999999999953
No 168
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=46.10 E-value=34 Score=27.19 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=30.5
Q ss_pred HHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 568 VLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 568 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
|--+.|+.+.+|+.+|++.||++++++..+|-=|..
T Consensus 13 VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 445667777999999999999999999999986654
No 169
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=45.86 E-value=29 Score=36.63 Aligned_cols=65 Identities=5% Similarity=0.124 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCC---CCCCCCCCeEeecccCc
Q 004725 565 QMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPM---SKDIAEDDAFFFNDKFT 632 (733)
Q Consensus 565 Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~---~~~~~~~~~f~~N~~f~ 632 (733)
...||-+...+..+|..||++.||++...+.+.+..|...+ ++...+. +..-.+...+.+|.+..
T Consensus 18 ~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g---~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAH---LVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHT---SEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---cEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 34577777777899999999999999999999999999988 7776432 11233445688887753
No 170
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=45.71 E-value=16 Score=30.02 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=33.8
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACV 604 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~ 604 (733)
++....||..+-..++.++.+|++.+|++...+-++|..|...
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4556666633333467999999999999999999999998765
No 171
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=45.36 E-value=24 Score=30.05 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=50.0
Q ss_pred hhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhccccc
Q 004725 664 RKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERD 722 (733)
Q Consensus 664 r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd 722 (733)
++-.++.+|..++. ++.+.--+|.+.+.+.....+.++...+-..+..|.++|+|++.
T Consensus 9 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 45668888888886 47788899999988877667899999999999999999999986
No 172
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=45.31 E-value=20 Score=26.26 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=31.2
Q ss_pred hCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceee
Q 004725 573 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLR 611 (733)
Q Consensus 573 n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~ 611 (733)
|+++-+.+..+++..|++.+++...|..|...+ +++
T Consensus 21 ~sGGildI~~~a~kygV~kdeV~~~LrrLe~KG---LI~ 56 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKG---LIA 56 (59)
T ss_dssp HTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTT---SEE
T ss_pred HcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCC---Cee
Confidence 455668999999999999999999999998877 664
No 173
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=44.13 E-value=22 Score=25.91 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 566 MCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 566 a~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
..|+.++- .++|..||++.+|++...+...+.....
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34454453 3579999999999999999988877654
No 174
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=44.13 E-value=36 Score=25.50 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=30.2
Q ss_pred eeHHHHHHHHHHh---CCCCcCHHHHHHHcCCChHHHHHHHHHhh
Q 004725 561 VSTYQMCVLMLFN---SIDRLSYKEIEQATEIPAPELKRCLQSLA 602 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn---~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 602 (733)
++.-|-.|+.+.- ..+++|+.||++.+|++...+...+..-.
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3555666664433 34679999999999999999887766443
No 175
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=43.80 E-value=8.2 Score=27.94 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHhCcccchhhhh
Q 004725 153 TRLQDTLLELVQRERSGEVIN-RGLMRNITKMLMDLGSFVYQDDFE 197 (733)
Q Consensus 153 ~~l~~~il~~I~~~R~g~~i~-~~~lk~ii~~l~~lg~~~Y~~~FE 197 (733)
+.+.+.|-+++...|..+.-+ .--+.++..||.+||+-+|.-..|
T Consensus 9 ~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLGLrVYe~q~E 54 (55)
T 1dp3_A 9 DEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQME 54 (55)
T ss_dssp CTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHTTSHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhHHHHHHhhc
Confidence 345566677777777654322 122568899999999888875544
No 176
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=43.00 E-value=18 Score=29.23 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=32.5
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
+|.-|..|+.++ ..++|..||++.+|++...++..+.....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 466677777666 35689999999999999999988876643
No 177
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=42.87 E-value=36 Score=22.98 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHh
Q 004725 566 MCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSL 601 (733)
Q Consensus 566 a~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 601 (733)
..|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 12 ~~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 345555544 4799999999999999988877543
No 178
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.86 E-value=26 Score=31.17 Aligned_cols=65 Identities=9% Similarity=0.176 Sum_probs=49.2
Q ss_pred EEeeHHHHHHHHHHhC-CCCcCHHHHHHHc-----CCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecc
Q 004725 559 LNVSTYQMCVLMLFNS-IDRLSYKEIEQAT-----EIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFND 629 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~ 629 (733)
+.+|.--..||..+.+ ...+|.+||.+.+ +++...+-++|..|...+ ++.+...+ .....|.++.
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G---lv~~~~~~---~~~~~Y~~~~ 88 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG---LVKELTYG---DASSRFDFVT 88 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT---SEEEECCT---TSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC---CEEEEeeC---CCceEEECCC
Confidence 3567777888877754 4679999999998 899999999999999988 88765321 1134577664
No 179
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.60 E-value=30 Score=30.33 Aligned_cols=64 Identities=14% Similarity=0.283 Sum_probs=48.4
Q ss_pred EEeeHHHHHHHHHHhCC--CCcCHHHHHHHc-----CCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeec
Q 004725 559 LNVSTYQMCVLMLFNSI--DRLSYKEIEQAT-----EIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFN 628 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N 628 (733)
+.+|.--..||..+.+. +.+|.+||.+.+ +++...+-++|..|...+ ++.+...+ .....|.++
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G---lv~~~~~~---~~~~~Y~~~ 84 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG---LVVRHNFD---GGHAVFELA 84 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT---SEEEECSS---SSSCEEEES
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC---cEEEEEeC---CCceEEEeC
Confidence 34677778888777653 579999999998 899999999999999988 88765321 112457664
No 180
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=41.06 E-value=23 Score=27.73 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=33.3
Q ss_pred HHHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhcc
Q 004725 565 QMCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVK 605 (733)
Q Consensus 565 Qa~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k 605 (733)
.=.||-.+.+ ...++..+|++.+|++.++|.++|..|-..+
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEg 62 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKEL 62 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3356666665 4679999999999999999999999997543
No 181
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=40.90 E-value=21 Score=33.55 Aligned_cols=42 Identities=7% Similarity=0.030 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhcc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k 605 (733)
-|..|+.+.+++..+|++||++.+|+++..+++-|.-|....
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 367889999999999999999999999999999999887654
No 182
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=40.41 E-value=42 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.5
Q ss_pred CCcCHHHHHHHcCCChHHHHHHHH
Q 004725 576 DRLSYKEIEQATEIPAPELKRCLQ 599 (733)
Q Consensus 576 ~~~t~~ei~~~t~i~~~~l~~~L~ 599 (733)
.++|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999999887763
No 183
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=39.77 E-value=25 Score=34.22 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.-+.|+....+ ++.|..+|++.+|+++.++..+|..|...+ ++.+.
T Consensus 166 ~~~~l~~~l~~-~~~t~~~la~~~~l~~~~V~~~l~~L~~~~---~v~~~ 211 (232)
T 2qlz_A 166 QLAILHYLLLN-GRATVEELSDRLNLKEREVREKISEMARFV---PVKII 211 (232)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHHTCCHHHHHHHHHHHTTTS---CEEEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHhCcCHHHHHHHHHHHHhcC---CeEEe
Confidence 33444444444 578999999999999999999999998876 77543
No 184
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=39.75 E-value=19 Score=28.65 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=39.8
Q ss_pred hhheehhcccCC---CCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcce
Q 004725 669 EAAIVRIMKARR---VLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLY 729 (733)
Q Consensus 669 ~A~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y 729 (733)
+-.|..+|+... .++..+|-.+ +..+...|.++|..|.+.|+|++.+..+..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~--------Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGK--------LGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 344667777777 8888777543 3467789999999999999999876665443
No 185
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=39.66 E-value=35 Score=28.22 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=26.8
Q ss_pred eHHHHHHH-HHHh--CCCCcCHHHHHHHcCCChHHHHHHHH
Q 004725 562 STYQMCVL-MLFN--SIDRLSYKEIEQATEIPAPELKRCLQ 599 (733)
Q Consensus 562 s~~Qa~iL-l~Fn--~~~~~t~~ei~~~t~i~~~~l~~~L~ 599 (733)
+.-|-.|+ +.|- +.+++|++||++.+|++...++..+.
T Consensus 21 p~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 21 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44444444 4452 34679999999999999988776644
No 186
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=39.65 E-value=32 Score=35.70 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=38.3
Q ss_pred HHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecc
Q 004725 571 LFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFND 629 (733)
Q Consensus 571 ~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~ 629 (733)
...+ .+.+|++||++.+|+++..+.+.|..|+..+ +|.+. ++.|..+.
T Consensus 43 ~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g---~l~~~--------~~~y~~t~ 91 (363)
T 3dp7_A 43 LLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIG---TILLE--------EDRYVLAK 91 (363)
T ss_dssp HHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHT---SEEEE--------TTEEEECH
T ss_pred HHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCC---CeEec--------CCEEeccc
Confidence 3334 4689999999999999999999999999888 88764 35666554
No 187
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=39.32 E-value=17 Score=25.97 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCcccch
Q 004725 152 QTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQ 193 (733)
Q Consensus 152 ~~~l~~~il~~I~~~R~g~~i~~~~lk~ii~~l~~lg~~~Y~ 193 (733)
++.+.+.|-+++...|..+. ..--+.++..||.+||.-+|+
T Consensus 9 s~~v~~~I~~iVe~r~qeGA-~dvs~Ssv~smLleLGLrVYe 49 (52)
T 3omy_A 9 NNNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELGLRVYM 49 (52)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhhh
Confidence 35566777778888887665 222366889999999976775
No 188
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=38.95 E-value=39 Score=26.89 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=28.4
Q ss_pred eHHHHHHHHH-H--hCCCCcCHHHHHHHcCCChHHHHHHHHHh
Q 004725 562 STYQMCVLML-F--NSIDRLSYKEIEQATEIPAPELKRCLQSL 601 (733)
Q Consensus 562 s~~Qa~iLl~-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 601 (733)
|.-|-.|+.+ | .+..++|+.||++.+|++...++..+..-
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555533 3 33367999999999999999887766543
No 189
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=38.23 E-value=14 Score=30.66 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=33.8
Q ss_pred HhCCCCc-CHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 572 FNSIDRL-SYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 572 Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+..++.+ |..+|++.+|++...+.++|..|...+ ++...+
T Consensus 29 l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~G---li~~~~ 69 (102)
T 1v4r_A 29 LAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEG---LVSSRG 69 (102)
T ss_dssp CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSS---CCEEET
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEeC
Confidence 4445667 999999999999999999999998877 776654
No 190
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=38.14 E-value=36 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=33.3
Q ss_pred eeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhh
Q 004725 561 VSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLAC 603 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 603 (733)
+|.-|..||.++- .++|..||++.+|++...++..+..+..
T Consensus 35 Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 35 LSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp CCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5677777776664 4689999999999999999988876654
No 191
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.07 E-value=37 Score=30.31 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=42.2
Q ss_pred EEeeHHHHHHHHHHhC-CCCcCHHHHHHHc-----CCChHHHHHHHHHhhhccCcceeecc
Q 004725 559 LNVSTYQMCVLMLFNS-IDRLSYKEIEQAT-----EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+.+|.--..||..+.+ .+.+|.+||.+.+ +++...+-++|..|...+ ++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G---lv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN---FISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC---cEEEE
Confidence 4567777888877754 4679999999988 799999999999999988 77764
No 192
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=37.92 E-value=44 Score=34.09 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhcc
Q 004725 563 TYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605 (733)
Q Consensus 563 ~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k 605 (733)
.-+..||.+++++..+|.++|++.+|++...+.+.|..|...+
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G 47 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWG 47 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 3456677777888889999999999999999999999998766
No 193
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=37.82 E-value=94 Score=29.72 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=43.9
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+..|..|+-+....+.+|..+++..+|.+....+..|..+...+ ++..+.
T Consensus 153 ~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G---~l~~D~ 202 (218)
T 3cuq_B 153 EEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMG---HLCRDD 202 (218)
T ss_dssp GGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcC---CEEEEC
Confidence 46899998888878899999999999999999999999998877 887763
No 194
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=37.80 E-value=42 Score=25.55 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=27.3
Q ss_pred eHHHHHHH-HHH--hCCCCcCHHHHHHHcCCChHHHHHHHHH
Q 004725 562 STYQMCVL-MLF--NSIDRLSYKEIEQATEIPAPELKRCLQS 600 (733)
Q Consensus 562 s~~Qa~iL-l~F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~ 600 (733)
+.-|-.|+ +.| .+..++|+.||++.+|++...+...+..
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555 333 2235799999999999999988776543
No 195
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=36.86 E-value=16 Score=28.82 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=36.0
Q ss_pred hhhhhhhheehhcccC--CCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCc
Q 004725 664 RKPQIEAAIVRIMKAR--RVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRK 727 (733)
Q Consensus 664 r~~~i~A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~ 727 (733)
|...|=..|-+-++.+ ...+..||.+ . |..+...|.+-|..|.++|||+|+.+.+.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~----~----lgvS~~TVrr~L~~Le~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIAD----A----AGLSIYQVRLYLEQLHDVGVLEKVNAGKG 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHH----H----HTCCHHHHHHHHHHHHHTTSEEEESCSSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHH----H----HCCCHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 3333444444443443 5666665543 3 33467789999999999999999976543
No 196
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=36.18 E-value=45 Score=34.40 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=36.7
Q ss_pred CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecc
Q 004725 576 DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFND 629 (733)
Q Consensus 576 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~ 629 (733)
+..|++||++.+|+++..+.+.|..|+..+ +|.+. ++.|..+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~g---ll~~~--------~~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMR---VINLE--------DGKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE--------TTEEEECH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCC---CeEee--------CCeEecCH
Confidence 679999999999999999999999999988 88764 34676664
No 197
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=36.17 E-value=42 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=39.4
Q ss_pred eeHHHHHHHHHHhC-----CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFNS-----IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn~-----~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|.-|..||....+ +...|+.||++.+|++...+.++|..|...+ .+.+.+
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G---~i~~~~ 58 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKG---YIERKN 58 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTT---SEECC-
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCC---CEEecC
Confidence 35667777755432 3368999999999999999999999999877 776653
No 198
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=35.90 E-value=35 Score=34.66 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecc
Q 004725 576 DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFND 629 (733)
Q Consensus 576 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~ 629 (733)
+.+|++||++.+|+++..+.+.|..|+..+ ++... ++.|..+.
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g---~l~~~--------~~~y~~t~ 80 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVIIG---FMTKQ--------AEGYRLTS 80 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE--------TTEEEECH
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHhcC---CeEec--------CCEEecCH
Confidence 679999999999999999999999999988 88753 35666553
No 199
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=35.86 E-value=18 Score=28.47 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=39.4
Q ss_pred hheehhcccCC---CCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcce
Q 004725 670 AAIVRIMKARR---VLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLY 729 (733)
Q Consensus 670 A~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y 729 (733)
-.|..+|+... .++..+|-. . +..+...|.+.|..|.+.|+|++.++.+..|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~----~----Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSG----K----LGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHH----H----HCCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHH----H----HCcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 34667788877 888877753 3 3357789999999999999999987666443
No 200
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=35.63 E-value=25 Score=27.51 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=32.6
Q ss_pred heehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhccccc
Q 004725 671 AIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERD 722 (733)
Q Consensus 671 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd 722 (733)
.|.+.+...+.++..+|.+. +..+...+.+.+..|.+.|+|++.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~--------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEA--------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHH--------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34555565667777766532 455888999999999999999954
No 201
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=35.51 E-value=37 Score=32.41 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=36.6
Q ss_pred HHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 568 VLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 568 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
|+.+-.+++.++..+|++.+|++...+.++|..|...+ ++.+.+
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~G---lV~r~~ 54 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEE---LLIKDK 54 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEET
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCC---CEEEec
Confidence 34444456789999999999999999999999999887 887653
No 202
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=35.30 E-value=20 Score=29.88 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHhCCCCc-CHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 569 LMLFNSIDRL-SYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 569 Ll~Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+-.+..++.+ |..+|++.+|++...+.++|..|...+ ++...+
T Consensus 34 ~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~G---lI~~~~ 77 (102)
T 2b0l_A 34 FEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAG---VIESRS 77 (102)
T ss_dssp TTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEE
T ss_pred HhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEEe
Confidence 3444455566 999999999999999999999999887 776654
No 203
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.11 E-value=37 Score=30.32 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=43.4
Q ss_pred EEeeHHHHHHHHHHhCC--CCcCHHHHHHHc-----CCChHHHHHHHHHhhhccCcceeecc
Q 004725 559 LNVSTYQMCVLMLFNSI--DRLSYKEIEQAT-----EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+.+|.--..||..+.+. ..+|.+||.+.+ +++...+-++|..|...+ ++.+.
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G---lv~~~ 71 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG---IVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC---cEEEE
Confidence 45677788888777653 579999999998 899999999999999988 88764
No 204
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=35.10 E-value=37 Score=30.14 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 571 LFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 571 ~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
....++.+|..+|++.+|++...+.++|..|...+ ++...
T Consensus 48 ~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~G---lv~r~ 87 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGVSQPTVAKMLKRLATMG---LIEMI 87 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTT---CEEEE
T ss_pred HHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCC---CEEEe
Confidence 33344678999999999999999999999999876 77654
No 205
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.71 E-value=48 Score=28.71 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=41.4
Q ss_pred eeHHHHHHHHHHh-CCCCcCHHHHHHHc-----CCChHHHHHHHHHhhhccCcceeeccC
Q 004725 561 VSTYQMCVLMLFN-SIDRLSYKEIEQAT-----EIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 561 ~s~~Qa~iLl~Fn-~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
+|.--..||..|. ..+.+|.+||.+.+ +++...+-++|..|...+ ++.+..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G---lv~~~~ 65 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG---LVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT---SEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC---CEEEEE
Confidence 4556677886665 45579999999998 899999999999999988 887643
No 206
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=34.31 E-value=30 Score=34.08 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=29.9
Q ss_pred HHHHHHHH-HhCCCCcCHHHHHHHcCCChHHHHHHHHHh
Q 004725 564 YQMCVLML-FNSIDRLSYKEIEQATEIPAPELKRCLQSL 601 (733)
Q Consensus 564 ~Qa~iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 601 (733)
+...|+-. .+....+|+++|++.|||..+++..+|+.|
T Consensus 194 W~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 194 WSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 34445533 334567999999999999999999999987
No 207
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=34.20 E-value=49 Score=33.64 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=36.2
Q ss_pred CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeec
Q 004725 576 DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFN 628 (733)
Q Consensus 576 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N 628 (733)
+..|++||++.+|+++..+.+.|..|+..+ ++.+.+ ++.|..+
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g---~l~~~~-------~~~y~~t 82 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFE---IFQGDT-------RDGYANT 82 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEET-------TTEEEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCC---ceEecC-------CCeEecC
Confidence 579999999999999999999999999988 887642 3456654
No 208
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=33.71 E-value=19 Score=35.11 Aligned_cols=65 Identities=8% Similarity=0.068 Sum_probs=45.2
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec-cCCCC-CCCCCCeEeeccc
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK-EPMSK-DIAEDDAFFFNDK 630 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~-~~~~~-~~~~~~~f~~N~~ 630 (733)
+.....||.+..+ +.+|+.+|++.+|++...+.++|..|...+ ++.. ...+. ...|...|.++..
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~aG---LV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMEREG---VLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHHTT---SEEEEEECC-----CEEEEEECCC
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEeeecCCCCCCccEEEEEccc
Confidence 3455667766654 679999999999999999999999999988 7765 22221 1122345666654
No 209
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=33.08 E-value=41 Score=34.64 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=36.8
Q ss_pred CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecc
Q 004725 575 IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFND 629 (733)
Q Consensus 575 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~ 629 (733)
.+..|++||++.+|+++..+.+.|..|+..+ ++.... ++.|..+.
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g---~~~~~~-------~g~y~~t~ 94 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIG---LLEEDA-------PGEFVPTE 94 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEE-------TTEEEECT
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCC---CEEecC-------CCeEEeCH
Confidence 3579999999999999999999999999888 887642 34566554
No 210
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=32.71 E-value=22 Score=29.05 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=36.9
Q ss_pred hhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccC
Q 004725 667 QIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDK 723 (733)
Q Consensus 667 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~ 723 (733)
..+..|...+...+.++..+|...+ ..+...+-+.|..|.++|+|+|..
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3455566666666778887775433 458889999999999999999964
No 211
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=32.17 E-value=61 Score=32.91 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 576 DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 576 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+.+|++||++.+|+++..+.+.|..|+..+ ++...
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~~g---l~~~~ 71 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVAVG---LFTRD 71 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhCC---cEEec
Confidence 589999999999999999999999999877 88764
No 212
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=32.10 E-value=43 Score=26.26 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHhCCCCcCHHHHHHHcCC-ChHHHHHHHHHhhh
Q 004725 567 CVLMLFNSIDRLSYKEIEQATEI-PAPELKRCLQSLAC 603 (733)
Q Consensus 567 ~iLl~Fn~~~~~t~~ei~~~t~i-~~~~l~~~L~~L~~ 603 (733)
.|--+.|+.+.+|+.+|++.+|+ +++++..+|-=|..
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 34456777788999999999999 99999999986654
No 213
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=32.04 E-value=45 Score=30.93 Aligned_cols=41 Identities=5% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHHHHhC-CCCcCHHHHHHHcCCChHHHHHHHHHhhhcc
Q 004725 565 QMCVLMLFNS-IDRLSYKEIEQATEIPAPELKRCLQSLACVK 605 (733)
Q Consensus 565 Qa~iLl~Fn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k 605 (733)
+..||.++.+ ...+|..+|++.+|++...+.+.|..|...+
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G 64 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLG 64 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4556666664 4569999999999999999999999998877
No 214
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=31.91 E-value=64 Score=23.84 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=28.1
Q ss_pred eeHHHHHHHHH-HhCCCCcCHHHHHHHcCCChHHHHHHHHHh
Q 004725 561 VSTYQMCVLML-FNSIDRLSYKEIEQATEIPAPELKRCLQSL 601 (733)
Q Consensus 561 ~s~~Qa~iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 601 (733)
++.-|-.|+.+ |- .++|..||++.+|++...+...+..-
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35555566644 43 35899999999999999887766543
No 215
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=31.79 E-value=51 Score=23.47 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHhHhcCCCCCChHHHHHHHHHHHHhhCchhhhhHHHHHhhHH
Q 004725 426 HLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMK 469 (733)
Q Consensus 426 ~L~~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~ 469 (733)
-+.+|++.......+.-..|+..|+..-|......+.+|++-+-
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 46677777655567777888888888888888888888887654
No 216
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=31.42 E-value=33 Score=35.88 Aligned_cols=55 Identities=5% Similarity=-0.017 Sum_probs=41.8
Q ss_pred CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccCC--CCCCCCCCeEeecccCc
Q 004725 575 IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEPM--SKDIAEDDAFFFNDKFT 632 (733)
Q Consensus 575 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~~--~~~~~~~~~f~~N~~f~ 632 (733)
+..+|-.||++.||++...+.+.+..|...+ ++...+. +..-.+...+.+|.++.
T Consensus 31 ~~~~sr~~la~~~gls~~tv~~~v~~L~~~g---li~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 31 KSPVSRVELAEELGLTKTTVGEIAKIFLEKG---IVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHT---SEEEEECCC----CCCEEEEECGGGC
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEeecCCCCCCCCCceEEEEccCCC
Confidence 5689999999999999999999999999988 7765432 22234556688887754
No 217
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.10 E-value=43 Score=30.26 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=39.7
Q ss_pred hhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhccccc
Q 004725 668 IEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERD 722 (733)
Q Consensus 668 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd 722 (733)
+|..|.+.+.....++..+|-.. ...+...+.++|..|.+.|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~--------lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKK--------VGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeeec
Confidence 56678999999999999887643 346889999999999999999974
No 218
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=31.09 E-value=1.2e+02 Score=27.17 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHH-HHhCC-CCcCHHHHHHHcC-CChHHHHHHHHHhhhccCcceeecc
Q 004725 566 MCVLM-LFNSI-DRLSYKEIEQATE-IPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 566 a~iLl-~Fn~~-~~~t~~ei~~~t~-i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
..||. +.... ...|+++|.+..+ ++...|.++|..|...+ ++...
T Consensus 32 ~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaG---LV~~~ 79 (151)
T 3u1d_A 32 LDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRG---IVEKI 79 (151)
T ss_dssp HHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT---SEEEE
T ss_pred HHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCC---CeEEe
Confidence 34443 34443 3489999999999 99999999999999988 77653
No 219
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=30.95 E-value=51 Score=33.77 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=31.6
Q ss_pred CcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 577 RLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 577 ~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+|++||++.+|+++..+.+.|..|+..+ ++.+.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~g---ll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALG---LLTKE 89 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCC---CeEec
Confidence 89999999999999999999999999888 88864
No 220
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=30.88 E-value=61 Score=25.91 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=27.2
Q ss_pred eHHHHHHHHH-HhCCCCcCHHHHHHHcCCChHHHHHHHHHh
Q 004725 562 STYQMCVLML-FNSIDRLSYKEIEQATEIPAPELKRCLQSL 601 (733)
Q Consensus 562 s~~Qa~iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 601 (733)
+.-|-.|+.+ |- .++|+.||++.+|++...++..+..-
T Consensus 39 ~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 39 SAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4445555544 43 35899999999999999887766543
No 221
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=30.60 E-value=41 Score=29.93 Aligned_cols=57 Identities=5% Similarity=0.125 Sum_probs=48.1
Q ss_pred hhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhccccc
Q 004725 665 KPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERD 722 (733)
Q Consensus 665 ~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd 722 (733)
...++.+|..++.. +.+.-.+|.+++.+.....+.++...+-..+..|.++|||++.
T Consensus 39 ~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~ 95 (145)
T 1xma_A 39 RGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSY 95 (145)
T ss_dssp GGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEE
Confidence 45577788888854 6788899999888776666789999999999999999999986
No 222
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.25 E-value=25 Score=31.29 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=40.6
Q ss_pred eehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceee
Q 004725 672 IVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRY 731 (733)
Q Consensus 672 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Y 731 (733)
|.++|...+-++.++|...+.+. ...++...|=+.|+.|.+.|.|.+-..+.+...|
T Consensus 24 Il~~l~~~~h~ta~ei~~~l~~~---~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y 80 (145)
T 3eyy_A 24 VLEAVDTLEHATPDDILGEVRKT---ASGINISTVYRTLELLEELGLVSHAHLGHGAPTY 80 (145)
T ss_dssp HHHHHHHHSSBCHHHHHHHHHTT---CTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHHhh---CCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 34444443478999998877644 2356899999999999999999986544344444
No 223
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=30.05 E-value=52 Score=34.04 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 575 IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 575 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+.+|++||++.+|+++..+.+.|..|+..+ ++...
T Consensus 47 ~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~G---ll~~~ 82 (374)
T 1qzz_A 47 AGADTLAGLADRTDTHPQALSRLVRHLTVVG---VLEGG 82 (374)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTT---SEECC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCC---CEEEe
Confidence 3579999999999999999999999999988 88764
No 224
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=30.00 E-value=33 Score=36.57 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC-C--CCCCCCCCeEeecccC
Q 004725 566 MCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP-M--SKDIAEDDAFFFNDKF 631 (733)
Q Consensus 566 a~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~-~--~~~~~~~~~f~~N~~f 631 (733)
..||-+...+..+|..||++.||++...+.+.+..|...+ ++...+ . +..-.+...+.+|.++
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~g---li~~~~~~~~s~~GR~~~~l~~~~~~ 107 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAH---LIHETTVQEAISRGRPAVGLQTNNLG 107 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEECHHHHHHHTSCCEEEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEeccccCCCCCCCCCeEEEECCCC
Confidence 3466555566789999999999999999999999999987 776643 1 1112345567777764
No 225
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=29.72 E-value=1.6e+02 Score=21.44 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=33.2
Q ss_pred HhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 572 FNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 572 Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
=.-..++|..|++...|.|.+.-+.+|..|...+ -|.+-
T Consensus 13 ~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G---~LRKR 51 (68)
T 3i71_A 13 TSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAG---TLRKR 51 (68)
T ss_dssp HHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEE
T ss_pred HHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcc---hhhhh
Confidence 3345689999999999999999999999999887 67664
No 226
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.62 E-value=42 Score=29.79 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=41.8
Q ss_pred EEeeHHHHHHHHHHhCCCCcCHHHHHHHc-----CCChHHHHHHHHHhhhccCcceeecc
Q 004725 559 LNVSTYQMCVLMLFNSIDRLSYKEIEQAT-----EIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
+.+|.--..||-.+.+.+.+|.++|.+.+ +++...+-++|..|...+ ++.+.
T Consensus 15 ~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G---lv~~i 71 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELG---LVSHA 71 (145)
T ss_dssp CCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT---SEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC---cEEEE
Confidence 34567777888666654489999999877 688999999999999988 77664
No 227
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=29.59 E-value=40 Score=27.38 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=29.6
Q ss_pred eehhccc--CCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccc
Q 004725 672 IVRIMKA--RRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLER 721 (733)
Q Consensus 672 IVRimK~--~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~r 721 (733)
|.+++.. .+.+...+|-. +...+...+..+|..|.++|||+|
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~--------~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRY--------KSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEE
Confidence 3344444 34666655542 355688899999999999999994
No 228
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=28.46 E-value=77 Score=25.24 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhcc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k 605 (733)
.+-.+.....-+..++++.|++.++++.+++...|..|+..+
T Consensus 17 ~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~ 58 (84)
T 1ufm_A 17 IEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEG 58 (84)
T ss_dssp HHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 344444445557889999999999999999999999998765
No 229
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=28.20 E-value=39 Score=33.46 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCCCcCHHHHHHHcCCChHHHHHHHHHh
Q 004725 574 SIDRLSYKEIEQATEIPAPELKRCLQSL 601 (733)
Q Consensus 574 ~~~~~t~~ei~~~t~i~~~~l~~~L~~L 601 (733)
..+.+|+++|++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3467999999999999999999999988
No 230
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=28.08 E-value=89 Score=24.85 Aligned_cols=53 Identities=2% Similarity=0.069 Sum_probs=39.3
Q ss_pred hhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCc
Q 004725 667 QIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRK 727 (733)
Q Consensus 667 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~ 727 (733)
..+..|.+.+.....++..+|... +..+...+-+.+..|.+.|+|.+..+++.
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~--------l~is~~tvs~~l~~L~~~glv~~~~~~r~ 76 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRI--------TGLSASATSQHLARMRDEGLIDSQRDAQR 76 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHH--------HCCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEecCCE
Confidence 344566677766667888776542 34578899999999999999998765543
No 231
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=27.11 E-value=57 Score=33.44 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeec
Q 004725 576 DRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRK 612 (733)
Q Consensus 576 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~ 612 (733)
+.+|++||++.+|+++..+.+.|..|+..+ +|.+
T Consensus 54 g~~t~~elA~~~g~~~~~l~rlLr~l~~~g---~l~~ 87 (348)
T 3lst_A 54 GPRTPAELAAATGTDADALRRVLRLLAVRD---VVRE 87 (348)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCC---CEEe
Confidence 479999999999999999999999999888 8887
No 232
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=26.67 E-value=58 Score=27.39 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCCCc-CHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 574 SIDRL-SYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 574 ~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
.++.+ |..+|++.+|++...+.++|..|...+ ++...+
T Consensus 29 ~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~G---li~~~~ 67 (113)
T 3tqn_A 29 EGEMIPSIRKISTEYQINPLTVSKAYQSLLDDN---VIEKRR 67 (113)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEET
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEec
Confidence 35567 999999999999999999999999887 876553
No 233
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=25.49 E-value=51 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=24.2
Q ss_pred CcCHHHHHHHcCCChHHHHHHHHHhh
Q 004725 577 RLSYKEIEQATEIPAPELKRCLQSLA 602 (733)
Q Consensus 577 ~~t~~ei~~~t~i~~~~l~~~L~~L~ 602 (733)
.+|+++|++.|||..+++..+|+.|-
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 79999999999999999999999873
No 234
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.39 E-value=70 Score=27.84 Aligned_cols=52 Identities=6% Similarity=0.139 Sum_probs=39.8
Q ss_pred hheehhccc-C-CCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCC
Q 004725 670 AAIVRIMKA-R-RVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKV 724 (733)
Q Consensus 670 A~IVRimK~-~-k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~ 724 (733)
.+|..++.. . +-++.++|...+.+.. -.++...|=+.++.|.+.|.|.+-..
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 345555544 3 6899999998887652 35688999999999999999998754
No 235
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=25.18 E-value=47 Score=29.13 Aligned_cols=45 Identities=7% Similarity=0.217 Sum_probs=32.9
Q ss_pred hhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccc
Q 004725 669 EAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLER 721 (733)
Q Consensus 669 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~r 721 (733)
+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 34455555555667777665433 3477899999999999999999
No 236
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=25.15 E-value=34 Score=30.11 Aligned_cols=49 Identities=14% Similarity=0.352 Sum_probs=33.7
Q ss_pred hhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccc----cCCCC
Q 004725 669 EAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLER----DKVDR 726 (733)
Q Consensus 669 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~r----d~~~~ 726 (733)
+..|...+ ..+.++..+|-..+ ..+.+.+-+.|..|.++|||+| ++.|+
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 44556666 77888888876432 3466789999999999999998 65554
No 237
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=24.65 E-value=52 Score=28.34 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=32.9
Q ss_pred CCCCc-CHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 574 SIDRL-SYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 574 ~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
.++.+ |..+|++.+|++...+.++|..|...+ ++...+
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~G---li~~~~ 69 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAKAYKELEAQK---VIRTIP 69 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEET
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEEec
Confidence 35567 999999999999999999999999887 776654
No 238
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=24.65 E-value=68 Score=27.77 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=32.8
Q ss_pred CCCCc-CHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 574 SIDRL-SYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 574 ~~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
.++.+ |..+|++.+|++...+.++|..|...+ ++...+
T Consensus 24 ~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~G---li~~~~ 62 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRINPATARNGLTLLVEAG---ILYKKR 62 (129)
T ss_dssp TTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTT---SEEEET
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---cEEEec
Confidence 45667 999999999999999999999999877 776654
No 239
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=24.30 E-value=39 Score=33.44 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=25.4
Q ss_pred HHHHHHHHHh-CCCCcCHHHHHHHcCCChHHHHHHHHHh
Q 004725 564 YQMCVLMLFN-SIDRLSYKEIEQATEIPAPELKRCLQSL 601 (733)
Q Consensus 564 ~Qa~iLl~Fn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L 601 (733)
.-..|+-.+. ..+.+|+++|++.|||..+++..+|+.|
T Consensus 194 W~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 194 WSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 3344554333 3457999999999999999999999987
No 240
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=24.18 E-value=1.1e+02 Score=26.23 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhcc
Q 004725 563 TYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLACVK 605 (733)
Q Consensus 563 ~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k 605 (733)
.....++.+|.. ++|+++|+..-|++..++..+|..++..+
T Consensus 20 ~t~~~t~~l~~~--G~sleeIA~~R~L~~~TI~~Hl~~~v~~G 60 (122)
T 3iuo_A 20 KMKVSIVQQIDR--KVALDDIAVSHGLDFPELLSEVETIVYSG 60 (122)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 345667778876 57999999999999999999999887655
No 241
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=24.01 E-value=1e+02 Score=26.41 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCCc-CHHHHHHHcCCChHHHHHHHHHhhhccCcceeeccC
Q 004725 575 IDRL-SYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKEP 614 (733)
Q Consensus 575 ~~~~-t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~~ 614 (733)
++.+ |..+|++.+|++...+.++|..|...+ +|...+
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G---~i~~~~ 71 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAG---YIYAKR 71 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEET
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---eEEEec
Confidence 4566 799999999999999999999999888 887654
No 242
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.92 E-value=58 Score=28.59 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=48.2
Q ss_pred EEeeHHHHHHHHHHhC-CCCcCHHHHHHHc-----CCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecc
Q 004725 559 LNVSTYQMCVLMLFNS-IDRLSYKEIEQAT-----EIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFND 629 (733)
Q Consensus 559 l~~s~~Qa~iLl~Fn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~ 629 (733)
+.+|.--..||..+.+ .+.+|.+||.+.+ +++...+-++|..|...+ ++.+...+ .....|.++.
T Consensus 10 ~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G---lv~~~~~~---~g~~~Y~~~~ 80 (139)
T 3mwm_A 10 GRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG---EVDVLRTA---EGESVYRRCS 80 (139)
T ss_dssp CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT---SSEEEECT---TSCEEEECCS
T ss_pred CccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC---CEEEEEcC---CCceEEEECC
Confidence 4567777888877765 4679999999887 689999999999999988 77664321 1124576654
No 243
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.75 E-value=83 Score=27.56 Aligned_cols=58 Identities=7% Similarity=0.071 Sum_probs=42.0
Q ss_pred heehhccc-CCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceee
Q 004725 671 AIVRIMKA-RRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRY 731 (733)
Q Consensus 671 ~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Y 731 (733)
+|.++|.. .+-++.++|...+.+. ...++...|=+.|+.|.+.|.|.+-..+.+.-.|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~---~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHK---GDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHT---TCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 34444444 4689999999888654 2456899999999999999999997543333444
No 244
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=23.70 E-value=55 Score=33.99 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceeecc
Q 004725 575 IDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLRKE 613 (733)
Q Consensus 575 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~~~ 613 (733)
.+.+|++||++.+|+++..+.+.|..|+..+ ++.+.
T Consensus 69 ~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g---~l~~~ 104 (369)
T 3gwz_A 69 EGPRTATALAEATGAHEQTLRRLLRLLATVG---VFDDL 104 (369)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT---SSEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCC---CEEEe
Confidence 3579999999999999999999999999887 88874
No 245
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=23.59 E-value=99 Score=34.01 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHHhhhccCcceeeccCCCCCCCCCCeEeecccCcCCcceEEeccccccCCCchhhHHHHHHHHhhhhhh
Q 004725 588 EIPAPELKRCLQSLACVKGKHVLRKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQRESEPENQETRQRVEEDRKPQ 667 (733)
Q Consensus 588 ~i~~~~l~~~L~~L~~~k~~~iL~~~~~~~~~~~~~~f~~N~~f~~~~~ki~i~~~~~~~~~~~e~~~~~~~~~~~r~~~ 667 (733)
+++.+.+..+|.-|+....+ ++.+.+.+ .++.|.||..-- .. .=....-+.+..+|--.
T Consensus 302 ~l~~~~l~~~L~lL~~~~~~-fv~~~g~~----g~g~y~V~~~~~--~~--------------~lr~~~ie~ii~~~~G~ 360 (534)
T 2xub_A 302 NISKQVLDQYLTLLADDPLE-FVGKSGDS----GGGMYVINLHKA--LA--------------SLATATLESVVQERFGS 360 (534)
T ss_dssp CCCHHHHHHHHHHHHSCTTC-CEEECCCC----SSCEEEEBHHHH--HH--------------HHHHHHHHHHHHHHHCH
T ss_pred cccHHHHHHHHHHHhCCcHH-hhhccccC----CCceEEEeHHHH--HH--------------HHHHHHHHHHHHHHhCh
Confidence 56678899999988877656 88765431 356787765310 00 00111234445555555
Q ss_pred hhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccC
Q 004725 668 IEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDK 723 (733)
Q Consensus 668 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~ 723 (733)
.=+-|+|+|..++.+.-++|-+... .+..++++.+-.|.+.||+.-.+
T Consensus 361 ~a~RI~r~L~~~~~l~d~~ia~~a~--------i~~k~vR~~Ly~L~~~g~v~~qe 408 (534)
T 2xub_A 361 RCARIFRLVLQKKHIEQKQVEDFAM--------IPAKEAKDMLYKMLSENFMSLQE 408 (534)
T ss_dssp HHHHHHHHHHHC---CHHHHHHHHC--------SCHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhC--------CCHHHHHHHHHHHHHCCCeEEEE
Confidence 4556999999888888877754332 36689999999999999987643
No 246
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=22.72 E-value=76 Score=23.05 Aligned_cols=51 Identities=12% Similarity=0.365 Sum_probs=36.1
Q ss_pred hhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceee
Q 004725 674 RIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRY 731 (733)
Q Consensus 674 RimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Y 731 (733)
.+++..+.++.++|...+.+. ...++...|-+-|+ +-|.+ +-..+.+.+.|
T Consensus 12 ~ll~~~~~~t~~el~~~l~~~---~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 12 EIITSNEIETQDELVDMLKQD---GYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHSCCCSHHHHHHHHHHT---TCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHcCCCCCHHHHHHHHHHh---CCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 345667889999999887654 35778899999988 55778 54333345666
No 247
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=22.67 E-value=84 Score=31.77 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=31.5
Q ss_pred HhCCCCcCHHHHHHHcCCChHHHHHHHHHhhhccCcceee
Q 004725 572 FNSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVLR 611 (733)
Q Consensus 572 Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~~iL~ 611 (733)
....+.+|.+||++.+|++...+.+-|..|-..+ ++.
T Consensus 16 l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G---~v~ 52 (315)
T 2w48_A 16 LYYEQDMTQAQIARELGIYRTTISRLLKRGREQG---IVT 52 (315)
T ss_dssp HHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTT---SEE
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC---cEE
Confidence 3334569999999999999999999999998877 775
No 248
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=22.67 E-value=53 Score=28.06 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHhhhhhccccc
Q 004725 699 FLPNPVVIKKRIESLIEREFLERD 722 (733)
Q Consensus 699 F~~~~~~ik~~Ie~LIereyi~rd 722 (733)
+..+.+.+-+.|..|.++|||+|.
T Consensus 63 l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 63 LNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp SSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HCCCHHHHHHHHHHHHHCCCEEec
Confidence 456778999999999999999994
No 249
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=22.65 E-value=70 Score=27.63 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=31.1
Q ss_pred eehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccC
Q 004725 672 IVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDK 723 (733)
Q Consensus 672 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~ 723 (733)
|...+.... ++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 43 iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 444445556 8887776433 457889999999999999999865
No 250
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.45 E-value=70 Score=28.22 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=43.3
Q ss_pred hhheehhccc-CCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceee
Q 004725 669 EAAIVRIMKA-RRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRY 731 (733)
Q Consensus 669 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Y 731 (733)
.-+|..++.. .+-++.++|...+.+. .-..+...|=+.++.|.+.|+|.+-..+.+...|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~---~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 84 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGK---FPNMSVATVYNNLRVFRESGLVKELTYGDASSRF 84 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGG---CTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHh---CCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEE
Confidence 3345555544 5689999999877543 2356889999999999999999987654344444
No 251
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.30 E-value=77 Score=27.78 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=27.8
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHH
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQS 600 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~ 600 (733)
+.-|-.|+..+ ..++|+.||++.+|++...++..+..
T Consensus 111 ~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 111 SKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp CHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 55566666543 35789999999999999988776554
No 252
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.30 E-value=1.1e+02 Score=25.64 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=27.9
Q ss_pred eHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHh
Q 004725 562 STYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSL 601 (733)
Q Consensus 562 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 601 (733)
|.-|-.|+.+.-- .++|+.||++.+|++...+...+...
T Consensus 27 ~~~~r~vl~l~~~-~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 27 TNKQRNYLELFYL-EDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp CHHHHHHHHHHHT-SCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555555544322 35899999999999999888776644
No 253
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.92 E-value=1.2e+02 Score=25.99 Aligned_cols=64 Identities=8% Similarity=0.042 Sum_probs=45.4
Q ss_pred HhhhhhhhhhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceee
Q 004725 661 EEDRKPQIEAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRY 731 (733)
Q Consensus 661 ~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Y 731 (733)
...|..++++.. .+.+-++.++|...+.+.. ...+...|=+.++.|.+.|+|.+-..+.+...|
T Consensus 10 T~qR~~Il~~l~----~~~~~~sa~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 10 TRQRAAISTLLE----TLDDFRSAQELHDELRRRG---ENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp HHHHHHHHHHHH----HCCSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred CHHHHHHHHHHH----hCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 344555555432 3456899999998887642 356889999999999999999987654343444
No 254
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=21.63 E-value=95 Score=20.97 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=22.9
Q ss_pred HHHHHhCCCCcCHHHHHHHcCCChHHHHHHHH
Q 004725 568 VLMLFNSIDRLSYKEIEQATEIPAPELKRCLQ 599 (733)
Q Consensus 568 iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~ 599 (733)
|+.++.+ ++|..+|++.+|++...+.+.+.
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHH
Confidence 3434544 38999999999999998887764
No 255
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=21.61 E-value=1.7e+02 Score=23.33 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=38.8
Q ss_pred hhheehhcccCCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcce
Q 004725 669 EAAIVRIMKARRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLY 729 (733)
Q Consensus 669 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y 729 (733)
...|++.+.. +.++..+|...+ ..+...+-+.+..|.+.|+|++..+.+..|
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVY 76 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 3456677766 778887776443 347789999999999999999876655444
No 256
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=21.33 E-value=46 Score=28.47 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhCcccch
Q 004725 152 QTRLQDTLLELVQRERSGEVINRGLMRNITKMLMDLGSFVYQ 193 (733)
Q Consensus 152 ~~~l~~~il~~I~~~R~g~~i~~~~lk~ii~~l~~lg~~~Y~ 193 (733)
++.+.+.|-+++...|..++ ..--+.++..||.+||+-+|.
T Consensus 9 s~~v~~~I~~iVe~r~qeGA-~dvs~SSv~smLlELGLrVY~ 49 (127)
T 3on0_A 9 NNNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELGLRVYM 49 (127)
T ss_dssp CHHHHHHHHHHHHHHHTTTC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHHhHHHHH
Confidence 45677778888888887666 323366889999999976765
No 257
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.28 E-value=73 Score=28.34 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=43.0
Q ss_pred heehhccc-CCCCChHHHHHHHHHHhccCCCCChHHHHHHHHHhhhhhcccccCCCCcceee
Q 004725 671 AIVRIMKA-RRVLDHNNIVTEVTKQLQSRFLPNPVVIKKRIESLIEREFLERDKVDRKLYRY 731 (733)
Q Consensus 671 ~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~rd~~~~~~y~Y 731 (733)
+|..++.. .+-++.++|...+.+.. -.++...|=+.++.|.+.|+|.+-..+.+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 89 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKD---KNTSISSVYRILNFLEKENFISVLETSKSGRRY 89 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 44555544 46899999999887652 356889999999999999999986543344444
No 258
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=20.75 E-value=77 Score=29.00 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHcCCC-hHHHHHHHH-Hhhhcc
Q 004725 564 YQMCVLMLFNSIDRLSYKEIEQATEIP-APELKRCLQ-SLACVK 605 (733)
Q Consensus 564 ~Qa~iLl~Fn~~~~~t~~ei~~~t~i~-~~~l~~~L~-~L~~~k 605 (733)
-+++++-+..++..+++++|++.++++ ..++..-+- .-+..+
T Consensus 96 rlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~g 139 (169)
T 3chm_A 96 KQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAG 139 (169)
T ss_dssp HHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 455666444457789999999999999 778776554 444445
No 259
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.65 E-value=77 Score=30.95 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=33.1
Q ss_pred EeeHHHHHHHHHHhCCCCcCHHHHHHHcCCChHHHHHHHHHhh
Q 004725 560 NVSTYQMCVLMLFNSIDRLSYKEIEQATEIPAPELKRCLQSLA 602 (733)
Q Consensus 560 ~~s~~Qa~iLl~Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 602 (733)
.+|.-|-.|+.++ ..++|.+||++.+|++...++..+....
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3577777777776 3679999999999999999988876554
No 260
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.05 E-value=1e+02 Score=25.87 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=29.1
Q ss_pred eeHHHHHHHHH-HhCCCCcCHHHHHHHcCCChHHHHHHHHHhh
Q 004725 561 VSTYQMCVLML-FNSIDRLSYKEIEQATEIPAPELKRCLQSLA 602 (733)
Q Consensus 561 ~s~~Qa~iLl~-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 602 (733)
+|+-|..|+.+ +-+ ++|..||++.+|++...+...+..-.
T Consensus 23 L~~~~r~vl~l~y~~--g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTDKQMNYIELYYAD--DYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCHHHHHHHHHHHHT--CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35566666644 333 47999999999999998887766543
Done!