Query 004726
Match_columns 733
No_of_seqs 573 out of 4632
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 11:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 3E-130 7E-135 1137.9 77.2 698 1-710 10-736 (737)
2 TIGR02437 FadB fatty oxidation 100.0 7E-129 2E-133 1124.9 77.5 696 1-710 1-713 (714)
3 PRK11730 fadB multifunctional 100.0 4E-127 8E-132 1114.0 79.4 696 1-710 1-713 (715)
4 TIGR02440 FadJ fatty oxidation 100.0 2E-126 4E-131 1105.5 78.3 688 6-710 2-698 (699)
5 PRK11154 fadJ multifunctional 100.0 4E-126 8E-131 1105.9 77.6 690 5-710 6-705 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1E-73 2.2E-78 638.4 44.9 400 307-710 4-501 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 4.5E-72 9.8E-77 627.4 45.6 402 305-710 4-502 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 1.5E-64 3.3E-69 520.6 31.7 280 307-586 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 2.3E-62 4.9E-67 462.7 20.1 280 306-585 9-298 (298)
10 PRK07819 3-hydroxybutyryl-CoA 100.0 9.3E-59 2E-63 485.9 32.8 279 306-584 3-286 (286)
11 KOG1683 Hydroxyacyl-CoA dehydr 100.0 4.4E-59 9.6E-64 474.7 19.4 376 319-710 1-378 (380)
12 PRK08293 3-hydroxybutyryl-CoA 100.0 2E-54 4.2E-59 455.9 32.9 279 307-585 2-287 (287)
13 PRK09260 3-hydroxybutyryl-CoA 100.0 1.2E-53 2.5E-58 450.5 33.5 281 308-588 1-284 (288)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 1.8E-53 3.9E-58 449.7 33.3 278 307-584 2-290 (291)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 2.2E-53 4.7E-58 447.3 32.3 278 307-584 2-282 (282)
16 PLN02545 3-hydroxybutyryl-CoA 100.0 4E-53 8.7E-58 448.2 34.1 282 307-588 3-287 (295)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 1.5E-52 3.3E-57 443.1 33.4 281 307-587 3-286 (292)
18 PRK08269 3-hydroxybutyryl-CoA 100.0 3.1E-51 6.8E-56 433.0 31.5 268 319-586 1-284 (314)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 2.4E-51 5.2E-56 431.4 26.6 277 306-586 5-298 (321)
20 KOG1680 Enoyl-CoA hydratase [L 100.0 2.1E-50 4.7E-55 395.3 23.0 249 8-296 40-289 (290)
21 PRK05862 enoyl-CoA hydratase; 100.0 3.8E-49 8.1E-54 408.5 27.9 253 1-294 1-254 (257)
22 PRK07658 enoyl-CoA hydratase; 100.0 4E-49 8.7E-54 408.8 27.1 255 1-295 1-255 (257)
23 PRK05980 enoyl-CoA hydratase; 100.0 9.3E-49 2E-53 406.5 26.5 254 1-293 1-259 (260)
24 PRK05809 3-hydroxybutyryl-CoA 100.0 1.2E-48 2.5E-53 405.8 27.2 255 1-294 1-257 (260)
25 PRK06142 enoyl-CoA hydratase; 100.0 8.9E-49 1.9E-53 409.1 26.2 256 1-294 2-270 (272)
26 PRK09076 enoyl-CoA hydratase; 100.0 1.5E-48 3.2E-53 404.1 27.3 252 5-295 4-256 (258)
27 PRK08140 enoyl-CoA hydratase; 100.0 2.1E-48 4.6E-53 404.3 28.3 255 1-294 1-259 (262)
28 PRK06143 enoyl-CoA hydratase; 100.0 1.7E-48 3.6E-53 402.6 27.2 252 1-291 3-256 (256)
29 PRK08150 enoyl-CoA hydratase; 100.0 2.3E-48 5E-53 401.3 27.6 252 4-296 2-254 (255)
30 PRK05995 enoyl-CoA hydratase; 100.0 4.6E-48 1E-52 401.8 28.7 255 1-294 1-259 (262)
31 PRK09674 enoyl-CoA hydratase-i 100.0 4.5E-48 9.9E-53 399.7 28.1 252 1-295 1-253 (255)
32 PRK08139 enoyl-CoA hydratase; 100.0 4.1E-48 8.8E-53 402.0 27.5 255 2-295 9-264 (266)
33 PRK05981 enoyl-CoA hydratase; 100.0 4.1E-48 8.8E-53 403.1 27.2 256 1-294 1-263 (266)
34 PRK06563 enoyl-CoA hydratase; 100.0 4.2E-48 9.1E-53 400.2 27.1 251 6-294 1-252 (255)
35 PRK05674 gamma-carboxygeranoyl 100.0 5E-48 1.1E-52 401.1 27.4 257 1-295 1-262 (265)
36 PRK06495 enoyl-CoA hydratase; 100.0 5.4E-48 1.2E-52 399.6 27.0 254 1-295 1-255 (257)
37 PRK09245 enoyl-CoA hydratase; 100.0 5.6E-48 1.2E-52 402.1 27.2 255 1-294 1-263 (266)
38 PRK07468 enoyl-CoA hydratase; 100.0 7.2E-48 1.6E-52 399.8 27.8 257 1-295 1-260 (262)
39 PRK07657 enoyl-CoA hydratase; 100.0 7.2E-48 1.6E-52 399.6 27.2 255 1-294 1-257 (260)
40 PRK06494 enoyl-CoA hydratase; 100.0 1.2E-47 2.6E-52 397.5 28.4 252 1-294 1-256 (259)
41 PRK08138 enoyl-CoA hydratase; 100.0 1.2E-47 2.5E-52 398.0 28.1 251 4-294 7-258 (261)
42 PRK06210 enoyl-CoA hydratase; 100.0 9.1E-48 2E-52 401.8 27.4 256 1-294 2-269 (272)
43 PLN02888 enoyl-CoA hydratase 100.0 1.8E-47 3.8E-52 396.7 29.0 254 3-297 8-264 (265)
44 PRK07799 enoyl-CoA hydratase; 100.0 1.4E-47 2.9E-52 398.3 28.1 253 3-294 4-260 (263)
45 PRK03580 carnitinyl-CoA dehydr 100.0 1.3E-47 2.8E-52 397.7 27.7 253 1-294 1-258 (261)
46 TIGR02280 PaaB1 phenylacetate 100.0 1.1E-47 2.3E-52 397.4 26.9 250 7-295 2-254 (256)
47 PLN02600 enoyl-CoA hydratase 100.0 9.3E-48 2E-52 396.2 26.1 245 12-294 2-248 (251)
48 PRK08258 enoyl-CoA hydratase; 100.0 1.5E-47 3.2E-52 400.4 27.6 253 5-295 18-275 (277)
49 PRK07511 enoyl-CoA hydratase; 100.0 2E-47 4.3E-52 396.6 27.8 255 1-294 1-258 (260)
50 PRK08252 enoyl-CoA hydratase; 100.0 2.3E-47 4.9E-52 394.3 28.0 250 1-294 1-251 (254)
51 PRK09120 p-hydroxycinnamoyl Co 100.0 2E-47 4.4E-52 398.4 27.4 251 3-291 7-264 (275)
52 PLN02664 enoyl-CoA hydratase/d 100.0 1.6E-47 3.4E-52 399.8 26.6 257 2-295 3-273 (275)
53 PRK06127 enoyl-CoA hydratase; 100.0 2E-47 4.4E-52 397.7 27.2 255 3-295 10-267 (269)
54 PRK07938 enoyl-CoA hydratase; 100.0 2.1E-47 4.6E-52 392.7 25.5 247 6-292 3-249 (249)
55 TIGR01929 menB naphthoate synt 100.0 2.6E-47 5.7E-52 394.7 26.0 255 3-295 1-257 (259)
56 PRK06688 enoyl-CoA hydratase; 100.0 4.5E-47 9.7E-52 394.2 27.8 251 4-294 5-256 (259)
57 TIGR03210 badI 2-ketocyclohexa 100.0 5.6E-47 1.2E-51 391.5 27.3 252 3-295 1-254 (256)
58 PRK07659 enoyl-CoA hydratase; 100.0 3.8E-47 8.3E-52 393.9 25.8 251 4-294 6-257 (260)
59 PRK11423 methylmalonyl-CoA dec 100.0 4.6E-47 1E-51 393.0 26.3 253 1-294 1-258 (261)
60 PRK07260 enoyl-CoA hydratase; 100.0 7.3E-47 1.6E-51 390.9 27.5 251 3-291 1-255 (255)
61 PLN03214 probable enoyl-CoA hy 100.0 6.8E-47 1.5E-51 394.3 27.2 257 4-297 11-271 (278)
62 PRK07396 dihydroxynaphthoic ac 100.0 1.2E-46 2.7E-51 392.4 27.7 254 3-296 12-268 (273)
63 PRK08260 enoyl-CoA hydratase; 100.0 1E-46 2.2E-51 397.7 27.0 258 1-297 1-278 (296)
64 PRK06144 enoyl-CoA hydratase; 100.0 1.1E-46 2.4E-51 390.6 25.9 250 3-294 7-259 (262)
65 PRK07327 enoyl-CoA hydratase; 100.0 1.4E-46 2.9E-51 391.3 26.5 251 3-294 10-265 (268)
66 PRK08259 enoyl-CoA hydratase; 100.0 2.1E-46 4.5E-51 386.5 27.4 248 1-291 1-249 (254)
67 PRK06023 enoyl-CoA hydratase; 100.0 2.4E-46 5.2E-51 385.9 27.4 247 1-289 1-251 (251)
68 PRK05864 enoyl-CoA hydratase; 100.0 2.1E-46 4.6E-51 391.5 27.3 256 3-295 8-273 (276)
69 PRK05870 enoyl-CoA hydratase; 100.0 1.9E-46 4E-51 386.3 25.0 247 1-289 1-249 (249)
70 PRK06190 enoyl-CoA hydratase; 100.0 5.7E-46 1.2E-50 383.2 28.5 250 1-291 1-254 (258)
71 TIGR03189 dienoyl_CoA_hyt cycl 100.0 5.6E-46 1.2E-50 382.3 27.0 245 6-295 3-249 (251)
72 PLN02921 naphthoate synthase 100.0 9.1E-46 2E-50 391.8 28.3 254 3-295 64-321 (327)
73 PRK12478 enoyl-CoA hydratase; 100.0 7.6E-46 1.7E-50 389.9 27.5 254 1-296 2-280 (298)
74 PRK07509 enoyl-CoA hydratase; 100.0 9.2E-46 2E-50 384.8 27.0 251 3-294 2-260 (262)
75 COG1024 CaiD Enoyl-CoA hydrata 100.0 8.1E-46 1.8E-50 383.9 26.3 253 1-293 2-256 (257)
76 PRK06072 enoyl-CoA hydratase; 100.0 2E-45 4.4E-50 378.1 26.6 244 6-295 2-246 (248)
77 PRK07854 enoyl-CoA hydratase; 100.0 3.5E-45 7.5E-50 374.9 25.4 238 6-294 2-240 (243)
78 PRK07112 polyketide biosynthes 100.0 5.5E-45 1.2E-49 376.4 26.7 251 1-295 1-253 (255)
79 PRK07110 polyketide biosynthes 100.0 7.6E-45 1.6E-49 374.1 27.4 245 1-287 2-247 (249)
80 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.3E-45 2.9E-50 380.3 21.4 244 7-289 1-245 (245)
81 PRK06130 3-hydroxybutyryl-CoA 100.0 2.9E-44 6.2E-49 383.8 32.2 276 307-587 3-285 (311)
82 PRK07827 enoyl-CoA hydratase; 100.0 5.8E-45 1.3E-49 377.9 25.5 250 4-294 6-258 (260)
83 PRK05617 3-hydroxyisobutyryl-C 100.0 4.7E-45 1E-49 390.5 24.0 288 3-296 2-325 (342)
84 PRK08321 naphthoate synthase; 100.0 2.4E-44 5.2E-49 379.7 27.5 255 4-296 23-297 (302)
85 PLN02874 3-hydroxyisobutyryl-C 100.0 4.3E-44 9.4E-49 387.4 24.3 290 3-296 10-338 (379)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.1E-43 2.4E-48 397.3 22.5 255 3-295 259-546 (550)
87 TIGR03222 benzo_boxC benzoyl-C 100.0 1.4E-43 3.1E-48 394.7 23.0 254 3-294 255-541 (546)
88 KOG1679 Enoyl-CoA hydratase [L 100.0 2E-44 4.4E-49 336.7 12.1 246 12-295 38-289 (291)
89 PRK05869 enoyl-CoA hydratase; 100.0 1.3E-42 2.8E-47 350.5 21.6 205 3-209 2-210 (222)
90 PLN02157 3-hydroxyisobutyryl-C 100.0 2E-42 4.4E-47 373.0 24.4 249 4-293 37-292 (401)
91 PRK08290 enoyl-CoA hydratase; 100.0 3.5E-42 7.5E-47 360.8 24.4 238 1-278 1-262 (288)
92 PLN02988 3-hydroxyisobutyryl-C 100.0 7.9E-41 1.7E-45 359.9 27.6 291 2-296 7-338 (381)
93 PRK08788 enoyl-CoA hydratase; 100.0 8E-41 1.7E-45 347.7 25.9 247 3-288 14-275 (287)
94 PRK06213 enoyl-CoA hydratase; 100.0 3.7E-41 8E-46 342.7 21.5 201 1-208 1-202 (229)
95 PRK08272 enoyl-CoA hydratase; 100.0 1.6E-40 3.5E-45 351.4 25.0 204 1-209 7-235 (302)
96 PLN02851 3-hydroxyisobutyryl-C 100.0 1.4E-38 3E-43 342.8 28.7 289 4-296 42-371 (407)
97 TIGR03200 dearomat_oah 6-oxocy 100.0 6.3E-39 1.4E-43 334.7 24.0 191 15-206 38-244 (360)
98 KOG1681 Enoyl-CoA isomerase [L 100.0 5E-40 1.1E-44 310.3 13.9 255 3-294 18-288 (292)
99 PRK06129 3-hydroxyacyl-CoA deh 100.0 5.7E-38 1.2E-42 333.9 30.3 262 308-569 2-274 (308)
100 PLN02267 enoyl-CoA hydratase/i 100.0 1.7E-38 3.6E-43 324.2 19.5 197 6-205 2-204 (239)
101 COG0447 MenB Dihydroxynaphthoi 100.0 3.7E-38 8.1E-43 295.4 14.7 252 3-294 17-275 (282)
102 KOG0016 Enoyl-CoA hydratase/is 100.0 3.4E-36 7.4E-41 292.8 23.3 253 1-290 4-263 (266)
103 PF02737 3HCDH_N: 3-hydroxyacy 100.0 6.4E-36 1.4E-40 291.5 21.0 180 310-489 1-180 (180)
104 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.9E-35 4.1E-40 331.1 22.2 204 1-206 12-236 (550)
105 TIGR03222 benzo_boxC benzoyl-C 100.0 1.6E-35 3.5E-40 330.2 21.5 201 3-206 10-232 (546)
106 PRK07531 bifunctional 3-hydrox 100.0 1.4E-34 3E-39 325.8 27.3 243 308-554 4-254 (495)
107 cd06558 crotonase-like Crotona 100.0 3.3E-35 7.1E-40 292.6 18.9 191 7-199 2-194 (195)
108 KOG2305 3-hydroxyacyl-CoA dehy 100.0 9.9E-35 2.1E-39 275.2 15.6 231 308-538 3-241 (313)
109 KOG1682 Enoyl-CoA isomerase [L 100.0 6.1E-34 1.3E-38 264.2 16.2 245 12-294 39-284 (287)
110 KOG1684 Enoyl-CoA hydratase [L 100.0 2.8E-30 6.1E-35 261.0 19.3 290 4-296 38-367 (401)
111 PRK08268 3-hydroxy-acyl-CoA de 99.9 1.1E-25 2.5E-30 252.9 19.0 161 412-572 337-500 (507)
112 PF00725 3HCDH: 3-hydroxyacyl- 99.9 3.1E-24 6.7E-29 188.1 8.9 94 491-584 1-97 (97)
113 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 3.4E-20 7.4E-25 208.0 27.6 119 454-572 378-499 (503)
114 PF00725 3HCDH: 3-hydroxyacyl- 99.9 5.3E-22 1.2E-26 173.9 8.5 94 621-718 1-97 (97)
115 KOG2304 3-hydroxyacyl-CoA dehy 99.8 6.4E-21 1.4E-25 181.6 9.7 97 619-719 198-298 (298)
116 PRK09260 3-hydroxybutyryl-CoA 99.8 1.1E-18 2.4E-23 184.2 12.2 99 619-721 183-283 (288)
117 PRK07819 3-hydroxybutyryl-CoA 99.8 2E-18 4.3E-23 181.3 11.1 96 619-718 188-286 (286)
118 cd07014 S49_SppA Signal peptid 99.8 3.3E-18 7.1E-23 167.1 11.3 144 31-192 22-175 (177)
119 PRK05808 3-hydroxybutyryl-CoA 99.8 2.8E-18 6E-23 180.7 11.1 97 618-718 183-282 (282)
120 COG1250 FadB 3-hydroxyacyl-CoA 99.7 2.9E-18 6.4E-23 177.6 10.2 99 618-720 183-285 (307)
121 COG2084 MmsB 3-hydroxyisobutyr 99.7 9.1E-18 2E-22 172.2 13.3 187 309-525 1-210 (286)
122 PLN02545 3-hydroxybutyryl-CoA 99.7 1.1E-17 2.4E-22 177.3 12.1 98 619-720 185-285 (295)
123 cd07020 Clp_protease_NfeD_1 No 99.7 3.9E-17 8.5E-22 160.6 13.8 149 16-191 2-171 (187)
124 PRK08293 3-hydroxybutyryl-CoA 99.7 1.6E-17 3.5E-22 175.2 10.9 97 619-719 187-287 (287)
125 PRK06035 3-hydroxyacyl-CoA deh 99.7 2.7E-17 5.9E-22 173.9 10.4 96 619-718 187-290 (291)
126 PRK07530 3-hydroxybutyryl-CoA 99.7 4.8E-17 1E-21 172.2 11.7 99 619-721 185-286 (292)
127 TIGR01505 tartro_sem_red 2-hyd 99.7 3E-16 6.5E-21 166.1 15.6 187 310-526 1-209 (291)
128 PRK08269 3-hydroxybutyryl-CoA 99.7 1.3E-16 2.7E-21 169.4 11.4 100 620-720 182-284 (314)
129 PRK11559 garR tartronate semia 99.7 8.7E-16 1.9E-20 163.1 17.2 187 309-526 3-212 (296)
130 TIGR02440 FadJ fatty oxidation 99.6 4.6E-16 9.9E-21 182.1 11.7 99 619-723 486-586 (699)
131 PRK07417 arogenate dehydrogena 99.6 4.2E-15 9E-20 156.2 16.0 154 310-488 2-167 (279)
132 PRK11154 fadJ multifunctional 99.6 1.1E-15 2.3E-20 179.5 11.7 96 619-720 491-588 (708)
133 PRK06130 3-hydroxybutyryl-CoA 99.6 2.7E-15 5.9E-20 160.4 11.0 100 620-720 183-284 (311)
134 TIGR02441 fa_ox_alpha_mit fatt 99.6 3E-15 6.6E-20 175.5 11.1 99 618-722 515-617 (737)
135 cd07019 S49_SppA_1 Signal pept 99.6 7.4E-15 1.6E-19 147.4 11.9 159 14-191 1-208 (211)
136 PRK11730 fadB multifunctional 99.6 4.5E-15 9.8E-20 174.2 11.3 98 618-720 493-594 (715)
137 PLN02688 pyrroline-5-carboxyla 99.6 1.1E-13 2.3E-18 144.8 19.6 184 310-522 2-201 (266)
138 TIGR02437 FadB fatty oxidation 99.6 5.8E-15 1.3E-19 172.9 11.0 97 618-719 493-593 (714)
139 KOG0409 Predicted dehydrogenas 99.6 7.3E-14 1.6E-18 140.3 15.4 187 307-522 34-241 (327)
140 PRK11199 tyrA bifunctional cho 99.5 7.8E-14 1.7E-18 152.0 16.4 171 307-518 97-277 (374)
141 PRK15461 NADH-dependent gamma- 99.5 2.5E-13 5.4E-18 143.8 16.1 185 309-522 2-206 (296)
142 PF03446 NAD_binding_2: NAD bi 99.5 3E-14 6.5E-19 137.3 7.9 148 308-488 1-163 (163)
143 PRK06545 prephenate dehydrogen 99.5 6.9E-13 1.5E-17 144.2 19.4 176 309-506 1-195 (359)
144 PRK11880 pyrroline-5-carboxyla 99.5 1.4E-12 3E-17 136.5 19.5 188 308-522 2-202 (267)
145 PRK12491 pyrroline-5-carboxyla 99.5 1E-12 2.2E-17 136.9 18.4 152 310-487 4-161 (272)
146 PRK07679 pyrroline-5-carboxyla 99.5 9.6E-13 2.1E-17 138.4 17.8 188 308-522 3-206 (279)
147 TIGR01692 HIBADH 3-hydroxyisob 99.5 3.2E-13 7E-18 142.6 13.5 185 313-526 1-206 (288)
148 PRK08507 prephenate dehydrogen 99.5 4E-12 8.6E-17 133.4 20.9 151 310-488 2-168 (275)
149 COG0287 TyrA Prephenate dehydr 99.5 1.2E-12 2.5E-17 135.7 16.3 156 308-487 3-170 (279)
150 PLN02350 phosphogluconate dehy 99.5 5.4E-13 1.2E-17 148.4 14.2 188 307-522 5-224 (493)
151 PTZ00142 6-phosphogluconate de 99.4 1.7E-12 3.7E-17 144.4 17.4 194 309-525 2-221 (470)
152 cd07022 S49_Sppa_36K_type Sign 99.4 7.3E-13 1.6E-17 133.3 12.5 146 25-191 18-211 (214)
153 TIGR00705 SppA_67K signal pept 99.4 5.3E-13 1.1E-17 152.7 12.5 167 12-203 307-524 (584)
154 cd00394 Clp_protease_like Case 99.4 1E-12 2.3E-17 126.4 11.6 135 28-183 8-161 (161)
155 PRK08655 prephenate dehydrogen 99.4 4.1E-12 8.9E-17 141.2 17.7 153 310-487 2-162 (437)
156 PRK15059 tartronate semialdehy 99.4 2.7E-12 5.8E-17 135.4 15.4 183 310-522 2-204 (292)
157 PRK11064 wecC UDP-N-acetyl-D-m 99.4 9E-12 2E-16 137.7 19.7 196 307-522 2-247 (415)
158 cd07023 S49_Sppa_N_C Signal pe 99.4 2.3E-12 4.9E-17 129.4 12.6 153 15-190 2-204 (208)
159 TIGR00872 gnd_rel 6-phosphoglu 99.4 1.1E-11 2.4E-16 131.4 18.2 187 310-522 2-208 (298)
160 PRK12490 6-phosphogluconate de 99.4 4.2E-12 9.1E-17 134.8 14.5 182 310-523 2-210 (299)
161 PRK09599 6-phosphogluconate de 99.4 4.8E-12 1.1E-16 134.5 14.8 182 310-523 2-211 (301)
162 PRK07502 cyclohexadienyl dehyd 99.4 7E-12 1.5E-16 133.7 16.1 156 307-487 5-178 (307)
163 PLN02256 arogenate dehydrogena 99.4 7.6E-12 1.6E-16 132.1 15.8 153 308-487 36-203 (304)
164 TIGR03026 NDP-sugDHase nucleot 99.4 6.3E-12 1.4E-16 139.5 15.0 201 310-522 2-243 (411)
165 cd07016 S14_ClpP_1 Caseinolyti 99.3 5.1E-12 1.1E-16 121.4 10.0 129 31-183 15-160 (160)
166 TIGR00706 SppA_dom signal pept 99.3 1.8E-11 3.9E-16 122.5 14.0 154 15-195 2-204 (207)
167 TIGR00873 gnd 6-phosphoglucona 99.3 2E-11 4.4E-16 135.9 15.6 192 310-525 1-218 (467)
168 PRK12557 H(2)-dependent methyl 99.3 9.4E-11 2E-15 125.5 19.1 205 320-547 32-260 (342)
169 PLN02858 fructose-bisphosphate 99.3 2.4E-11 5.3E-16 150.8 16.5 188 309-526 5-217 (1378)
170 COG0677 WecC UDP-N-acetyl-D-ma 99.3 1.2E-10 2.7E-15 121.6 18.9 198 309-522 10-250 (436)
171 PRK08818 prephenate dehydrogen 99.3 2.8E-11 6E-16 130.2 14.6 137 309-487 5-154 (370)
172 PRK15057 UDP-glucose 6-dehydro 99.3 2.5E-11 5.5E-16 132.5 13.3 195 310-522 2-232 (388)
173 PRK15182 Vi polysaccharide bio 99.3 3.1E-11 6.7E-16 133.4 13.6 200 309-522 7-243 (425)
174 COG1004 Ugd Predicted UDP-gluc 99.3 6.5E-11 1.4E-15 124.3 14.8 198 309-522 1-241 (414)
175 COG0345 ProC Pyrroline-5-carbo 99.3 6.5E-11 1.4E-15 120.8 14.3 150 309-485 2-157 (266)
176 PLN02858 fructose-bisphosphate 99.3 4.5E-11 9.7E-16 148.5 15.1 190 307-526 323-537 (1378)
177 PRK05479 ketol-acid reductoiso 99.2 1.7E-10 3.7E-15 121.7 17.1 150 309-484 18-177 (330)
178 PRK07680 late competence prote 99.2 2.4E-10 5.1E-15 119.9 18.1 151 310-487 2-158 (273)
179 PRK00094 gpsA NAD(P)H-dependen 99.2 2.2E-10 4.7E-15 123.5 17.5 196 309-521 2-238 (325)
180 PRK06928 pyrroline-5-carboxyla 99.2 1.3E-10 2.7E-15 122.0 15.0 153 308-485 1-160 (277)
181 PRK06476 pyrroline-5-carboxyla 99.2 2.9E-10 6.3E-15 118.2 17.4 179 310-522 2-193 (258)
182 cd05297 GH4_alpha_glucosidase_ 99.2 3.7E-12 8.1E-17 141.0 0.5 160 310-483 2-185 (423)
183 TIGR00465 ilvC ketol-acid redu 99.2 4E-10 8.6E-15 119.3 15.8 202 309-541 4-231 (314)
184 PRK07634 pyrroline-5-carboxyla 99.2 8.4E-10 1.8E-14 113.9 17.8 187 309-522 5-206 (245)
185 cd07018 S49_SppA_67K_type Sign 99.2 1.4E-10 2.9E-15 117.5 11.4 146 27-192 25-219 (222)
186 PRK14806 bifunctional cyclohex 99.2 5.1E-10 1.1E-14 133.8 17.1 156 308-487 3-176 (735)
187 PLN02712 arogenate dehydrogena 99.1 5.5E-10 1.2E-14 129.8 15.5 153 308-487 369-536 (667)
188 PRK08229 2-dehydropantoate 2-r 99.1 2.4E-09 5.3E-14 116.1 18.6 167 308-491 2-180 (341)
189 PRK07066 3-hydroxybutyryl-CoA 99.1 7.4E-11 1.6E-15 125.0 6.2 101 619-720 186-298 (321)
190 PF02153 PDH: Prephenate dehyd 99.1 8.1E-10 1.8E-14 114.6 13.0 141 323-487 1-157 (258)
191 TIGR01915 npdG NADPH-dependent 99.1 1.8E-09 3.9E-14 109.3 15.2 162 310-488 2-189 (219)
192 PRK14618 NAD(P)H-dependent gly 99.1 8.8E-10 1.9E-14 118.8 12.8 165 309-491 5-181 (328)
193 PLN02353 probable UDP-glucose 99.1 3.5E-09 7.7E-14 118.1 16.9 199 309-522 2-251 (473)
194 PRK14619 NAD(P)H-dependent gly 99.0 1.3E-08 2.8E-13 108.6 20.5 140 309-491 5-158 (308)
195 PTZ00431 pyrroline carboxylate 99.0 2E-09 4.4E-14 111.9 13.3 143 310-485 5-153 (260)
196 cd07021 Clp_protease_NfeD_like 99.0 2.3E-09 5E-14 104.0 12.6 145 16-190 2-176 (178)
197 PLN02712 arogenate dehydrogena 99.0 6.5E-09 1.4E-13 120.9 17.7 152 309-487 53-219 (667)
198 COG0240 GpsA Glycerol-3-phosph 99.0 4.1E-10 9E-15 117.0 5.9 108 309-428 2-110 (329)
199 COG2085 Predicted dinucleotide 99.0 9.7E-09 2.1E-13 99.9 14.8 154 308-488 1-180 (211)
200 PRK09287 6-phosphogluconate de 99.0 4.9E-09 1.1E-13 116.4 12.9 181 319-525 1-210 (459)
201 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 7.5E-10 1.6E-14 105.9 5.6 104 310-426 1-106 (157)
202 PF03721 UDPG_MGDP_dh_N: UDP-g 98.9 2.8E-09 6.1E-14 104.4 9.5 111 309-432 1-128 (185)
203 PTZ00082 L-lactate dehydrogena 98.9 1.7E-09 3.6E-14 115.4 8.4 126 308-445 6-153 (321)
204 TIGR01724 hmd_rel H2-forming N 98.9 9.4E-08 2E-12 98.7 19.8 147 320-487 32-193 (341)
205 cd01339 LDH-like_MDH L-lactate 98.9 2.1E-09 4.6E-14 114.2 7.9 122 311-444 1-139 (300)
206 PF10727 Rossmann-like: Rossma 98.9 8.1E-09 1.8E-13 94.0 9.6 114 309-446 11-127 (127)
207 PF03807 F420_oxidored: NADP o 98.9 3.2E-09 7E-14 92.6 6.2 89 310-424 1-95 (96)
208 PRK06223 malate dehydrogenase; 98.9 5.5E-09 1.2E-13 111.5 9.1 125 308-444 2-143 (307)
209 PTZ00117 malate dehydrogenase; 98.9 6E-09 1.3E-13 111.3 8.8 125 309-445 6-147 (319)
210 COG1023 Gnd Predicted 6-phosph 98.8 6.4E-08 1.4E-12 94.4 14.2 187 310-522 2-209 (300)
211 PRK12439 NAD(P)H-dependent gly 98.7 8.7E-08 1.9E-12 103.6 13.6 176 306-495 5-191 (341)
212 COG0362 Gnd 6-phosphogluconate 98.7 3.1E-07 6.7E-12 96.0 15.3 190 309-526 4-223 (473)
213 PRK06444 prephenate dehydrogen 98.6 6E-07 1.3E-11 88.5 13.7 113 310-487 2-120 (197)
214 TIGR03376 glycerol3P_DH glycer 98.6 1.6E-07 3.5E-12 100.6 9.3 108 310-429 1-122 (342)
215 PRK06249 2-dehydropantoate 2-r 98.6 5E-06 1.1E-10 89.0 20.1 175 307-497 4-195 (313)
216 PRK12921 2-dehydropantoate 2-r 98.5 2.6E-06 5.6E-11 90.9 17.6 165 310-490 2-179 (305)
217 PRK14620 NAD(P)H-dependent gly 98.5 4.8E-07 1E-11 97.5 11.9 104 310-426 2-109 (326)
218 PTZ00345 glycerol-3-phosphate 98.5 2.6E-07 5.6E-12 99.8 9.4 111 309-428 12-134 (365)
219 TIGR01763 MalateDH_bact malate 98.5 2.1E-07 4.6E-12 98.7 8.6 99 309-420 2-115 (305)
220 PRK06522 2-dehydropantoate 2-r 98.5 8.4E-07 1.8E-11 94.6 13.0 110 310-435 2-113 (304)
221 cd07015 Clp_protease_NfeD Nodu 98.5 2.3E-06 5E-11 82.2 14.1 141 27-189 9-169 (172)
222 PRK12480 D-lactate dehydrogena 98.5 5E-07 1.1E-11 96.8 9.6 100 309-436 147-249 (330)
223 PRK10949 protease 4; Provision 98.5 1.5E-06 3.2E-11 99.9 13.7 162 12-195 325-538 (618)
224 cd00650 LDH_MDH_like NAD-depen 98.4 4E-07 8.7E-12 94.9 8.0 96 311-420 1-116 (263)
225 KOG1683 Hydroxyacyl-CoA dehydr 98.4 9.5E-08 2.1E-12 99.4 2.6 94 619-723 171-267 (380)
226 cd07013 S14_ClpP Caseinolytic 98.4 1E-06 2.2E-11 84.6 9.3 130 28-183 9-162 (162)
227 TIGR00112 proC pyrroline-5-car 98.4 1.1E-05 2.4E-10 83.1 16.1 164 332-522 10-184 (245)
228 PRK06129 3-hydroxyacyl-CoA deh 98.4 1.3E-06 2.9E-11 93.2 9.5 86 619-705 185-274 (308)
229 COG4007 Predicted dehydrogenas 98.3 1.1E-05 2.3E-10 79.8 13.5 147 320-487 33-194 (340)
230 PF07991 IlvN: Acetohydroxy ac 98.3 5.6E-06 1.2E-10 77.5 11.1 93 309-428 5-99 (165)
231 TIGR02354 thiF_fam2 thiamine b 98.3 1.9E-06 4.2E-11 85.5 7.8 104 309-420 22-142 (200)
232 PRK13403 ketol-acid reductoiso 98.3 2E-06 4.4E-11 89.7 8.2 86 309-420 17-103 (335)
233 PRK13243 glyoxylate reductase; 98.3 4.5E-06 9.8E-11 89.8 11.0 89 309-424 151-240 (333)
234 PRK00277 clpP ATP-dependent Cl 98.3 5.4E-06 1.2E-10 82.3 10.7 135 26-186 38-196 (200)
235 PRK07574 formate dehydrogenase 98.2 1.4E-05 2.9E-10 87.1 12.6 92 309-425 193-285 (385)
236 PRK06436 glycerate dehydrogena 98.2 1.3E-05 2.9E-10 84.7 11.8 134 309-472 123-268 (303)
237 PLN03139 formate dehydrogenase 98.2 1.7E-05 3.6E-10 86.3 12.7 137 309-470 200-350 (386)
238 PF00056 Ldh_1_N: lactate/mala 98.1 1.2E-05 2.7E-10 75.2 9.3 99 309-421 1-116 (141)
239 PRK15469 ghrA bifunctional gly 98.1 2.1E-05 4.6E-10 83.6 12.2 110 309-445 137-251 (312)
240 PRK05225 ketol-acid reductoiso 98.1 0.0002 4.3E-09 77.9 18.6 185 309-520 37-251 (487)
241 cd01065 NAD_bind_Shikimate_DH 98.1 4.6E-06 9.9E-11 79.5 5.5 117 309-445 20-139 (155)
242 PRK08605 D-lactate dehydrogena 98.1 6.8E-06 1.5E-10 88.4 7.3 92 309-427 147-240 (332)
243 cd07017 S14_ClpP_2 Caseinolyti 98.1 1.4E-05 3.1E-10 77.4 8.7 138 17-183 11-171 (171)
244 PRK12553 ATP-dependent Clp pro 98.1 4.1E-05 8.8E-10 76.4 12.0 136 26-186 42-202 (207)
245 cd05291 HicDH_like L-2-hydroxy 98.0 9.7E-06 2.1E-10 86.4 7.8 98 309-420 1-114 (306)
246 PRK05708 2-dehydropantoate 2-r 98.0 2.7E-05 5.9E-10 82.9 10.7 115 309-436 3-118 (305)
247 PRK15076 alpha-galactosidase; 98.0 2.1E-05 4.6E-10 87.3 10.2 76 309-396 2-84 (431)
248 KOG2380 Prephenate dehydrogena 98.0 0.00011 2.5E-09 75.4 14.2 151 309-486 53-218 (480)
249 COG0616 SppA Periplasmic serin 98.0 5.8E-05 1.3E-09 80.5 12.6 163 14-196 60-272 (317)
250 COG0111 SerA Phosphoglycerate 98.0 3.6E-05 7.7E-10 82.0 10.5 126 309-461 143-282 (324)
251 PRK11778 putative inner membra 98.0 7.4E-05 1.6E-09 79.0 12.6 160 12-194 89-294 (330)
252 COG1893 ApbA Ketopantoate redu 98.0 0.00082 1.8E-08 71.4 20.7 166 309-488 1-176 (307)
253 PRK12319 acetyl-CoA carboxylas 98.0 0.00019 4.1E-09 73.5 15.1 138 26-186 77-214 (256)
254 TIGR01327 PGDH D-3-phosphoglyc 98.0 3.8E-05 8.3E-10 87.8 11.2 130 309-463 139-279 (525)
255 cd05293 LDH_1 A subgroup of L- 97.9 3.1E-05 6.6E-10 82.4 8.2 98 309-419 4-117 (312)
256 cd05292 LDH_2 A subgroup of L- 97.9 2.5E-05 5.3E-10 83.3 7.2 97 310-420 2-114 (308)
257 PF02558 ApbA: Ketopantoate re 97.9 5.5E-05 1.2E-09 71.7 8.8 108 311-435 1-114 (151)
258 PLN03230 acetyl-coenzyme A car 97.9 0.00056 1.2E-08 73.4 16.7 138 26-186 200-337 (431)
259 PF02826 2-Hacid_dh_C: D-isome 97.8 1.3E-05 2.9E-10 78.3 4.2 102 309-436 37-142 (178)
260 PRK13581 D-3-phosphoglycerate 97.8 7.9E-05 1.7E-09 85.2 11.0 129 309-463 141-280 (526)
261 PRK14512 ATP-dependent Clp pro 97.8 0.00014 3.1E-09 71.9 11.1 137 27-189 31-192 (197)
262 CHL00198 accA acetyl-CoA carbo 97.8 0.00044 9.6E-09 72.4 15.2 137 26-185 133-269 (322)
263 cd00300 LDH_like L-lactate deh 97.8 4.8E-05 1E-09 80.8 7.8 96 311-420 1-112 (300)
264 PLN02602 lactate dehydrogenase 97.8 4.9E-05 1.1E-09 81.9 7.8 96 309-419 38-151 (350)
265 CHL00028 clpP ATP-dependent Cl 97.8 0.00033 7.1E-09 69.3 12.8 136 26-186 37-196 (200)
266 PRK00066 ldh L-lactate dehydro 97.8 5.6E-05 1.2E-09 80.7 7.9 97 309-420 7-119 (315)
267 KOG3124 Pyrroline-5-carboxylat 97.8 0.00014 3E-09 72.6 9.8 149 310-482 2-155 (267)
268 PF00574 CLP_protease: Clp pro 97.8 3.6E-05 7.8E-10 75.5 5.7 142 17-185 18-180 (182)
269 PLN02928 oxidoreductase family 97.8 0.00016 3.4E-09 78.3 10.9 125 309-447 160-289 (347)
270 PRK14194 bifunctional 5,10-met 97.7 6E-05 1.3E-09 78.6 6.9 71 309-423 160-231 (301)
271 PRK05724 acetyl-CoA carboxylas 97.7 0.0013 2.9E-08 69.0 16.7 138 26-186 130-267 (319)
272 TIGR00513 accA acetyl-CoA carb 97.7 0.0016 3.4E-08 68.3 17.1 137 26-185 130-266 (316)
273 TIGR00493 clpP ATP-dependent C 97.7 0.00042 9E-09 68.3 12.0 136 27-185 34-190 (191)
274 cd05294 LDH-like_MDH_nadp A la 97.7 8.9E-05 1.9E-09 79.0 7.8 108 309-429 1-127 (309)
275 PRK08410 2-hydroxyacid dehydro 97.7 0.00026 5.7E-09 75.4 11.0 108 309-447 146-258 (311)
276 PLN03229 acetyl-coenzyme A car 97.7 0.002 4.4E-08 73.4 18.3 138 26-186 221-358 (762)
277 TIGR02853 spore_dpaA dipicolin 97.6 0.00012 2.6E-09 77.1 7.8 89 309-424 152-241 (287)
278 PF00670 AdoHcyase_NAD: S-aden 97.6 0.00014 2.9E-09 68.7 7.3 98 309-434 24-124 (162)
279 PF01972 SDH_sah: Serine dehyd 97.6 0.0012 2.6E-08 66.8 14.4 98 25-146 69-166 (285)
280 KOG2711 Glycerol-3-phosphate d 97.6 8.6E-05 1.9E-09 76.8 6.3 116 307-428 20-144 (372)
281 PRK11790 D-3-phosphoglycerate 97.6 0.00026 5.6E-09 78.3 10.3 99 309-436 152-254 (409)
282 cd05290 LDH_3 A subgroup of L- 97.6 0.00018 3.8E-09 76.4 8.2 98 310-420 1-116 (307)
283 COG0039 Mdh Malate/lactate deh 97.6 0.00019 4E-09 75.3 7.7 99 309-420 1-115 (313)
284 PRK15409 bifunctional glyoxyla 97.6 0.00046 9.9E-09 73.9 10.8 101 309-436 146-251 (323)
285 PF01343 Peptidase_S49: Peptid 97.5 9.6E-05 2.1E-09 70.4 4.9 102 94-196 2-150 (154)
286 PRK05442 malate dehydrogenase; 97.5 0.00016 3.5E-09 77.3 6.6 102 308-423 4-130 (326)
287 PRK13302 putative L-aspartate 97.5 0.00047 1E-08 72.0 9.9 79 307-409 5-87 (271)
288 cd01075 NAD_bind_Leu_Phe_Val_D 97.5 0.00077 1.7E-08 67.1 10.9 39 309-347 29-67 (200)
289 PRK06932 glycerate dehydrogena 97.5 0.00077 1.7E-08 72.0 11.5 108 309-447 148-260 (314)
290 PRK00257 erythronate-4-phospha 97.5 0.00011 2.3E-09 80.0 5.1 109 309-447 117-234 (381)
291 PRK05654 acetyl-CoA carboxylas 97.5 0.0048 1.1E-07 64.5 16.9 161 13-203 120-283 (292)
292 PRK06487 glycerate dehydrogena 97.5 0.00058 1.3E-08 73.0 10.1 96 309-436 149-248 (317)
293 PRK13304 L-aspartate dehydroge 97.4 0.0005 1.1E-08 71.7 9.2 85 309-419 2-90 (265)
294 PRK07531 bifunctional 3-hydrox 97.4 0.00033 7.1E-09 79.8 8.3 70 618-688 182-252 (495)
295 PRK08306 dipicolinate synthase 97.4 0.00048 1E-08 72.9 9.0 90 309-425 153-243 (296)
296 PRK14514 ATP-dependent Clp pro 97.4 0.0019 4.2E-08 64.6 12.6 135 26-186 61-219 (221)
297 TIGR01759 MalateDH-SF1 malate 97.4 0.00026 5.6E-09 75.6 6.9 101 309-423 4-129 (323)
298 KOG2653 6-phosphogluconate deh 97.4 0.0047 1E-07 64.3 15.3 195 308-526 6-227 (487)
299 KOG2666 UDP-glucose/GDP-mannos 97.4 0.0014 3E-08 66.9 11.3 198 308-522 1-251 (481)
300 PLN00112 malate dehydrogenase 97.3 0.00086 1.9E-08 74.1 9.9 101 309-423 101-226 (444)
301 TIGR01772 MDH_euk_gproteo mala 97.3 0.00049 1.1E-08 73.1 7.6 96 310-424 1-117 (312)
302 PLN00106 malate dehydrogenase 97.3 0.00047 1E-08 73.5 7.4 94 309-421 19-133 (323)
303 PRK12551 ATP-dependent Clp pro 97.3 0.0023 4.9E-08 63.1 11.6 134 27-186 33-190 (196)
304 PRK14513 ATP-dependent Clp pro 97.3 0.0023 4.9E-08 63.2 11.3 136 26-187 34-193 (201)
305 cd01487 E1_ThiF_like E1_ThiF_l 97.3 0.00096 2.1E-08 64.8 8.7 95 310-412 1-112 (174)
306 TIGR00515 accD acetyl-CoA carb 97.3 0.0085 1.8E-07 62.4 16.1 156 16-201 122-280 (285)
307 PRK06141 ornithine cyclodeamin 97.3 0.00059 1.3E-08 73.0 7.7 91 309-423 126-219 (314)
308 PRK14188 bifunctional 5,10-met 97.3 0.00048 1E-08 72.1 6.8 71 309-424 159-231 (296)
309 COG1052 LdhA Lactate dehydroge 97.3 0.00045 9.8E-09 73.6 6.6 91 309-425 147-237 (324)
310 TIGR03134 malonate_gamma malon 97.3 0.0069 1.5E-07 61.5 14.8 143 27-189 44-192 (238)
311 PLN02306 hydroxypyruvate reduc 97.3 0.0017 3.7E-08 71.0 11.1 116 309-436 166-287 (386)
312 PF01488 Shikimate_DH: Shikima 97.3 0.00028 6.1E-09 65.6 4.2 73 309-399 13-87 (135)
313 TIGR03133 malonate_beta malona 97.2 0.019 4E-07 59.4 17.7 139 25-187 72-218 (274)
314 cd01338 MDH_choloroplast_like 97.2 0.0004 8.7E-09 74.2 5.8 100 309-423 3-128 (322)
315 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0012 2.5E-08 72.6 9.4 86 309-422 203-288 (413)
316 PRK15438 erythronate-4-phospha 97.2 0.00032 6.9E-09 76.2 4.8 109 309-447 117-234 (378)
317 TIGR00705 SppA_67K signal pept 97.2 0.0051 1.1E-07 71.2 14.7 106 12-135 41-162 (584)
318 PRK04148 hypothetical protein; 97.2 0.0034 7.3E-08 57.6 10.6 93 309-422 18-110 (134)
319 cd01337 MDH_glyoxysomal_mitoch 97.2 0.0011 2.4E-08 70.3 8.2 94 310-423 2-117 (310)
320 TIGR01757 Malate-DH_plant mala 97.2 0.0016 3.5E-08 70.8 9.5 101 309-423 45-170 (387)
321 PRK14179 bifunctional 5,10-met 97.1 0.00087 1.9E-08 69.5 6.9 71 309-423 159-230 (284)
322 COG0059 IlvC Ketol-acid reduct 97.1 0.0079 1.7E-07 61.8 12.8 93 309-428 19-113 (338)
323 TIGR00936 ahcY adenosylhomocys 97.1 0.0016 3.4E-08 71.4 8.5 86 309-423 196-282 (406)
324 TIGR00745 apbA_panE 2-dehydrop 97.1 0.0096 2.1E-07 62.9 14.3 159 318-491 1-170 (293)
325 PTZ00325 malate dehydrogenase; 97.1 0.0012 2.5E-08 70.5 7.0 35 306-340 6-43 (321)
326 cd00704 MDH Malate dehydrogena 97.0 0.00063 1.4E-08 72.8 4.9 100 310-423 2-126 (323)
327 PRK05476 S-adenosyl-L-homocyst 97.0 0.0017 3.7E-08 71.5 8.3 86 309-423 213-299 (425)
328 COG0740 ClpP Protease subunit 97.0 0.0033 7.3E-08 61.2 9.2 141 18-188 30-194 (200)
329 PRK08644 thiamine biosynthesis 97.0 0.0018 3.9E-08 65.0 7.4 96 309-412 29-141 (212)
330 TIGR02371 ala_DH_arch alanine 97.0 0.002 4.4E-08 69.2 8.1 92 309-424 129-223 (325)
331 CHL00174 accD acetyl-CoA carbo 97.0 0.038 8.3E-07 57.5 17.0 140 25-198 146-291 (296)
332 COG1748 LYS9 Saccharopine dehy 97.0 0.0013 2.9E-08 71.1 6.6 93 308-421 1-97 (389)
333 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0022 4.7E-08 68.6 8.2 92 309-422 179-272 (311)
334 PRK10949 protease 4; Provision 96.9 0.0071 1.5E-07 70.1 12.4 86 32-135 96-181 (618)
335 PRK07189 malonate decarboxylas 96.9 0.041 9E-07 57.6 16.8 96 25-133 81-182 (301)
336 TIGR01771 L-LDH-NAD L-lactate 96.9 0.001 2.3E-08 70.4 5.2 94 313-420 1-110 (299)
337 TIGR01758 MDH_euk_cyt malate d 96.9 0.0019 4E-08 69.2 6.9 99 310-423 1-125 (324)
338 COG0569 TrkA K+ transport syst 96.9 0.0051 1.1E-07 62.4 9.8 97 309-420 1-98 (225)
339 PTZ00075 Adenosylhomocysteinas 96.9 0.0022 4.7E-08 71.1 7.2 88 309-427 255-344 (476)
340 COG1030 NfeD Membrane-bound se 96.8 0.017 3.6E-07 62.7 13.4 147 12-185 25-187 (436)
341 COG1712 Predicted dinucleotide 96.8 0.0051 1.1E-07 60.5 8.6 91 310-427 2-96 (255)
342 KOG0069 Glyoxylate/hydroxypyru 96.8 0.0035 7.7E-08 66.3 8.1 92 308-424 162-253 (336)
343 cd05197 GH4_glycoside_hydrolas 96.8 0.0085 1.8E-07 66.5 11.5 98 310-420 2-140 (425)
344 cd05298 GH4_GlvA_pagL_like Gly 96.8 0.0091 2E-07 66.4 11.6 75 309-395 1-82 (437)
345 PRK11861 bifunctional prephena 96.8 0.0054 1.2E-07 72.6 10.4 95 391-487 1-110 (673)
346 smart00859 Semialdhyde_dh Semi 96.8 0.0038 8.2E-08 56.8 7.0 99 310-428 1-104 (122)
347 cd05296 GH4_P_beta_glucosidase 96.8 0.0059 1.3E-07 67.7 9.8 74 310-395 2-83 (419)
348 PRK12549 shikimate 5-dehydroge 96.7 0.0035 7.6E-08 65.9 7.4 41 309-349 128-169 (284)
349 TIGR00507 aroE shikimate 5-deh 96.7 0.0034 7.4E-08 65.7 7.1 41 309-349 118-158 (270)
350 PF02056 Glyco_hydro_4: Family 96.7 0.0042 9.1E-08 60.3 7.0 74 310-395 1-81 (183)
351 KOG1495 Lactate dehydrogenase 96.6 0.0087 1.9E-07 60.3 8.7 106 308-427 20-141 (332)
352 TIGR01921 DAP-DH diaminopimela 96.6 0.017 3.8E-07 61.2 11.6 124 309-499 4-133 (324)
353 PLN02494 adenosylhomocysteinas 96.6 0.0046 1E-07 68.4 7.5 88 309-424 255-342 (477)
354 PRK13301 putative L-aspartate 96.6 0.0074 1.6E-07 61.7 8.5 76 309-411 3-84 (267)
355 PRK08618 ornithine cyclodeamin 96.6 0.0063 1.4E-07 65.5 8.3 92 309-424 128-222 (325)
356 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.0053 1.2E-07 60.8 7.2 41 309-349 29-70 (194)
357 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.0065 1.4E-07 58.5 7.4 74 309-426 45-119 (168)
358 PRK12552 ATP-dependent Clp pro 96.6 0.047 1E-06 54.7 13.4 142 28-186 49-214 (222)
359 TIGR01117 mmdA methylmalonyl-C 96.5 0.069 1.5E-06 60.8 16.0 165 17-201 318-496 (512)
360 PRK07340 ornithine cyclodeamin 96.5 0.007 1.5E-07 64.4 7.6 90 309-424 126-218 (304)
361 PRK00258 aroE shikimate 5-dehy 96.5 0.0066 1.4E-07 63.8 7.2 70 309-397 124-195 (278)
362 PF01118 Semialdhyde_dh: Semia 96.4 0.0047 1E-07 56.2 5.2 99 310-429 1-103 (121)
363 TIGR02992 ectoine_eutC ectoine 96.4 0.0081 1.8E-07 64.6 7.8 73 309-398 130-205 (326)
364 TIGR01035 hemA glutamyl-tRNA r 96.4 0.0045 9.6E-08 68.9 6.0 38 309-346 181-219 (417)
365 TIGR00518 alaDH alanine dehydr 96.4 0.0045 9.7E-08 67.7 5.8 39 309-347 168-206 (370)
366 cd01336 MDH_cytoplasmic_cytoso 96.4 0.006 1.3E-07 65.5 6.4 100 310-424 4-129 (325)
367 PF01113 DapB_N: Dihydrodipico 96.4 0.017 3.6E-07 52.8 8.5 103 310-433 2-108 (124)
368 PF01408 GFO_IDH_MocA: Oxidore 96.3 0.025 5.4E-07 51.0 9.4 75 310-409 2-82 (120)
369 COG4091 Predicted homoserine d 96.3 0.047 1E-06 57.1 12.1 160 310-487 19-184 (438)
370 COG2910 Putative NADH-flavin r 96.3 0.0063 1.4E-07 58.0 5.4 70 309-396 1-71 (211)
371 PRK00045 hemA glutamyl-tRNA re 96.3 0.0086 1.9E-07 66.9 7.5 39 309-347 183-222 (423)
372 PLN02819 lysine-ketoglutarate 96.3 0.03 6.5E-07 68.2 12.4 122 259-399 515-660 (1042)
373 PRK06718 precorrin-2 dehydroge 96.3 0.056 1.2E-06 53.8 12.2 129 309-478 11-142 (202)
374 PRK09310 aroDE bifunctional 3- 96.2 0.0085 1.8E-07 67.8 6.8 70 309-399 333-402 (477)
375 PRK08291 ectoine utilization p 96.2 0.012 2.6E-07 63.4 7.7 73 309-398 133-208 (330)
376 PRK14175 bifunctional 5,10-met 96.2 0.012 2.6E-07 61.4 7.0 72 309-424 159-231 (286)
377 TIGR01809 Shik-DH-AROM shikima 96.2 0.014 2.9E-07 61.5 7.6 41 309-349 126-167 (282)
378 PLN00203 glutamyl-tRNA reducta 96.2 0.0064 1.4E-07 69.0 5.4 83 309-409 267-352 (519)
379 PF13460 NAD_binding_10: NADH( 96.1 0.0096 2.1E-07 58.0 6.0 36 311-346 1-37 (183)
380 TIGR01470 cysG_Nterm siroheme 96.1 0.034 7.5E-07 55.5 9.9 132 309-479 10-143 (205)
381 PRK00048 dihydrodipicolinate r 96.1 0.012 2.7E-07 61.0 6.7 72 309-406 2-77 (257)
382 PRK00683 murD UDP-N-acetylmura 96.0 0.029 6.4E-07 62.6 10.0 133 308-488 3-136 (418)
383 PRK05086 malate dehydrogenase; 96.0 0.016 3.5E-07 61.8 7.4 94 309-420 1-115 (312)
384 COG2423 Predicted ornithine cy 96.0 0.024 5.3E-07 60.4 8.5 91 308-421 130-223 (330)
385 TIGR02356 adenyl_thiF thiazole 96.0 0.023 4.9E-07 56.7 7.8 32 309-340 22-54 (202)
386 PRK06046 alanine dehydrogenase 96.0 0.02 4.2E-07 61.7 7.9 92 309-424 130-224 (326)
387 PRK06407 ornithine cyclodeamin 96.0 0.019 4.2E-07 60.9 7.6 93 309-424 118-213 (301)
388 PF02254 TrkA_N: TrkA-N domain 95.9 0.049 1.1E-06 48.8 9.2 95 311-421 1-95 (116)
389 PF03059 NAS: Nicotianamine sy 95.9 0.017 3.6E-07 59.9 6.7 98 309-421 122-228 (276)
390 PRK06823 ornithine cyclodeamin 95.9 0.031 6.7E-07 59.6 8.7 92 309-424 129-223 (315)
391 COG0169 AroE Shikimate 5-dehyd 95.8 0.021 4.5E-07 59.6 7.0 42 309-350 127-169 (283)
392 PRK00961 H(2)-dependent methyl 95.8 0.23 5.1E-06 50.4 13.7 110 375-487 128-242 (342)
393 KOG0068 D-3-phosphoglycerate d 95.7 0.095 2.1E-06 54.7 11.1 89 309-424 147-236 (406)
394 TIGR01723 hmd_TIGR 5,10-methen 95.7 0.35 7.5E-06 49.3 14.7 110 375-487 126-240 (340)
395 COG0686 Ald Alanine dehydrogen 95.7 0.022 4.7E-07 58.8 6.2 92 309-421 169-266 (371)
396 PRK13940 glutamyl-tRNA reducta 95.6 0.017 3.7E-07 63.9 5.9 39 309-347 182-221 (414)
397 COG0373 HemA Glutamyl-tRNA red 95.6 0.032 7E-07 60.9 7.7 41 309-349 179-220 (414)
398 PF03435 Saccharop_dh: Sacchar 95.6 0.014 2.9E-07 64.6 4.9 72 311-397 1-77 (386)
399 COG0825 AccA Acetyl-CoA carbox 95.6 0.031 6.7E-07 56.9 6.9 84 93-186 183-266 (317)
400 PF01039 Carboxyl_trans: Carbo 95.6 0.12 2.6E-06 58.8 12.5 127 25-187 70-206 (493)
401 PRK09424 pntA NAD(P) transhydr 95.6 0.052 1.1E-06 61.4 9.4 41 309-349 166-206 (509)
402 PF02423 OCD_Mu_crystall: Orni 95.5 0.015 3.3E-07 62.1 4.7 93 309-425 129-226 (313)
403 PRK12475 thiamine/molybdopteri 95.5 0.043 9.3E-07 59.2 8.1 33 309-341 25-58 (338)
404 COG0300 DltE Short-chain dehyd 95.4 0.048 1E-06 56.2 7.8 48 306-353 4-52 (265)
405 PRK14192 bifunctional 5,10-met 95.4 0.043 9.3E-07 57.5 7.5 70 309-422 160-230 (283)
406 KOG0022 Alcohol dehydrogenase, 95.4 0.27 5.9E-06 51.0 12.9 87 309-408 194-282 (375)
407 PRK07589 ornithine cyclodeamin 95.4 0.06 1.3E-06 58.1 8.8 94 309-424 130-226 (346)
408 COG1064 AdhP Zn-dependent alco 95.4 0.46 1E-05 50.7 15.2 41 309-349 168-208 (339)
409 PRK14189 bifunctional 5,10-met 95.4 0.029 6.2E-07 58.4 6.1 71 309-423 159-230 (285)
410 cd05191 NAD_bind_amino_acid_DH 95.4 0.057 1.2E-06 45.8 6.9 31 309-339 24-55 (86)
411 PRK13303 L-aspartate dehydroge 95.3 0.04 8.6E-07 57.4 7.0 77 309-409 2-81 (265)
412 PLN02820 3-methylcrotonyl-CoA 95.2 0.52 1.1E-05 54.2 16.0 147 18-201 133-291 (569)
413 PRK09496 trkA potassium transp 95.2 0.088 1.9E-06 59.4 10.0 38 310-347 2-39 (453)
414 TIGR01117 mmdA methylmalonyl-C 95.2 0.44 9.6E-06 54.3 15.5 139 25-200 95-243 (512)
415 TIGR00561 pntA NAD(P) transhyd 95.2 0.04 8.7E-07 62.1 6.9 40 309-348 165-204 (511)
416 PRK10669 putative cation:proto 95.1 0.079 1.7E-06 61.6 9.4 96 309-420 418-513 (558)
417 PRK07688 thiamine/molybdopteri 95.0 0.097 2.1E-06 56.5 9.2 33 309-341 25-58 (339)
418 PRK03659 glutathione-regulated 95.0 0.11 2.3E-06 60.9 10.2 97 309-421 401-497 (601)
419 PRK14027 quinate/shikimate deh 95.0 0.046 1E-06 57.4 6.4 41 309-349 128-169 (283)
420 cd01484 E1-2_like Ubiquitin ac 95.0 0.089 1.9E-06 53.5 8.2 160 310-477 1-177 (234)
421 PRK09496 trkA potassium transp 94.9 0.14 3E-06 57.9 10.3 41 308-348 231-271 (453)
422 PF13380 CoA_binding_2: CoA bi 94.9 0.076 1.6E-06 47.8 6.6 79 309-419 1-84 (116)
423 PF00070 Pyr_redox: Pyridine n 94.8 0.044 9.6E-07 45.6 4.7 35 310-344 1-35 (80)
424 PRK12548 shikimate 5-dehydroge 94.8 0.053 1.1E-06 57.3 6.3 34 309-342 127-161 (289)
425 KOG1200 Mitochondrial/plastidi 94.7 0.055 1.2E-06 52.1 5.4 41 308-348 13-55 (256)
426 PRK04207 glyceraldehyde-3-phos 94.7 0.084 1.8E-06 57.1 7.7 106 309-425 2-111 (341)
427 PRK06199 ornithine cyclodeamin 94.7 0.067 1.5E-06 58.6 7.0 73 309-396 156-232 (379)
428 COG1486 CelF Alpha-galactosida 94.7 0.1 2.2E-06 57.3 8.0 75 309-395 4-85 (442)
429 PRK12409 D-amino acid dehydrog 94.7 0.027 5.9E-07 62.6 3.9 34 308-341 1-34 (410)
430 PRK06719 precorrin-2 dehydroge 94.7 0.23 5E-06 47.3 9.7 31 309-339 14-44 (157)
431 PRK00141 murD UDP-N-acetylmura 94.5 0.29 6.2E-06 55.6 11.8 37 307-343 14-50 (473)
432 PRK08300 acetaldehyde dehydrog 94.5 0.92 2E-05 47.8 14.5 97 309-426 5-104 (302)
433 COG0777 AccD Acetyl-CoA carbox 94.5 0.46 9.9E-06 48.3 11.5 160 15-204 124-285 (294)
434 PRK06153 hypothetical protein; 94.5 0.068 1.5E-06 57.7 6.1 32 309-340 177-209 (393)
435 PF13241 NAD_binding_7: Putati 94.5 0.089 1.9E-06 46.3 5.9 72 309-409 8-81 (103)
436 PRK02318 mannitol-1-phosphate 94.4 0.041 8.9E-07 60.6 4.4 38 310-347 2-40 (381)
437 PRK00436 argC N-acetyl-gamma-g 94.3 0.14 3E-06 55.5 8.3 100 308-429 2-105 (343)
438 PRK12829 short chain dehydroge 94.3 0.22 4.7E-06 51.4 9.6 39 309-347 12-51 (264)
439 PRK12749 quinate/shikimate deh 94.3 0.074 1.6E-06 56.1 6.0 35 309-343 125-160 (288)
440 cd05212 NAD_bind_m-THF_DH_Cycl 94.3 0.14 3E-06 47.7 7.1 72 309-424 29-101 (140)
441 TIGR00036 dapB dihydrodipicoli 94.3 0.12 2.5E-06 54.0 7.4 32 309-340 2-36 (266)
442 COG1063 Tdh Threonine dehydrog 94.3 0.14 3.1E-06 55.6 8.4 40 310-349 171-211 (350)
443 PRK12550 shikimate 5-dehydroge 94.3 0.11 2.4E-06 54.2 7.2 39 309-347 123-162 (272)
444 PRK12828 short chain dehydroge 94.3 0.11 2.4E-06 52.6 7.0 39 309-347 8-47 (239)
445 cd01483 E1_enzyme_family Super 94.2 0.13 2.8E-06 48.1 6.9 32 310-341 1-33 (143)
446 PF02882 THF_DHG_CYH_C: Tetrah 94.2 0.098 2.1E-06 49.8 6.0 73 309-425 37-110 (160)
447 PRK14191 bifunctional 5,10-met 94.2 0.13 2.8E-06 53.6 7.3 71 309-423 158-229 (285)
448 PRK03562 glutathione-regulated 94.1 0.25 5.4E-06 58.0 10.3 96 309-420 401-496 (621)
449 cd05311 NAD_bind_2_malic_enz N 94.1 0.099 2.1E-06 53.1 6.1 32 309-340 26-60 (226)
450 COG0499 SAM1 S-adenosylhomocys 94.0 0.14 3E-06 54.1 7.0 87 309-424 210-296 (420)
451 cd01079 NAD_bind_m-THF_DH NAD 94.0 0.2 4.3E-06 49.0 7.7 87 309-425 63-158 (197)
452 PRK01438 murD UDP-N-acetylmura 94.0 0.17 3.6E-06 57.7 8.6 47 295-342 4-50 (480)
453 TIGR03736 PRTRC_ThiF PRTRC sys 94.0 0.13 2.8E-06 52.6 6.7 98 309-411 12-129 (244)
454 KOG2305 3-hydroxyacyl-CoA dehy 94.0 0.11 2.4E-06 51.2 5.7 72 620-692 188-265 (313)
455 PRK05562 precorrin-2 dehydroge 93.9 0.48 1E-05 47.7 10.4 127 309-478 26-158 (223)
456 cd00757 ThiF_MoeB_HesA_family 93.9 0.21 4.6E-06 50.8 8.1 33 309-341 22-55 (228)
457 PRK10792 bifunctional 5,10-met 93.8 0.13 2.8E-06 53.6 6.4 71 309-423 160-231 (285)
458 PRK07326 short chain dehydroge 93.8 0.14 3E-06 51.9 6.7 40 309-348 7-47 (237)
459 COG1648 CysG Siroheme synthase 93.8 1.2 2.6E-05 44.5 13.0 131 309-479 13-146 (210)
460 cd00755 YgdL_like Family of ac 93.7 0.24 5.2E-06 50.3 8.1 33 309-341 12-45 (231)
461 PRK03369 murD UDP-N-acetylmura 93.7 0.49 1.1E-05 54.0 11.5 35 309-343 13-47 (488)
462 PRK05866 short chain dehydroge 93.6 0.15 3.2E-06 54.0 6.8 41 309-349 41-82 (293)
463 PRK14178 bifunctional 5,10-met 93.6 0.22 4.7E-06 51.8 7.6 72 309-424 153-225 (279)
464 COG2344 AT-rich DNA-binding pr 93.6 0.19 4.1E-06 48.3 6.4 81 306-411 82-168 (211)
465 cd01490 Ube1_repeat2 Ubiquitin 93.6 0.24 5.2E-06 54.8 8.4 162 310-479 1-186 (435)
466 COG1062 AdhC Zn-dependent alco 93.5 1.2 2.6E-05 47.1 12.8 87 310-409 188-275 (366)
467 PRK07825 short chain dehydroge 93.5 0.19 4E-06 52.4 7.1 40 309-348 6-46 (273)
468 PRK05653 fabG 3-ketoacyl-(acyl 93.4 0.2 4.3E-06 50.9 7.0 40 308-347 5-45 (246)
469 PRK14106 murD UDP-N-acetylmura 93.4 0.7 1.5E-05 52.1 12.1 33 309-341 6-38 (450)
470 PRK07831 short chain dehydroge 93.4 0.2 4.4E-06 51.7 7.2 43 309-351 18-62 (262)
471 PRK08762 molybdopterin biosynt 93.4 0.13 2.8E-06 56.6 5.9 32 309-340 136-168 (376)
472 PRK07231 fabG 3-ketoacyl-(acyl 93.2 0.24 5.3E-06 50.6 7.5 40 309-348 6-46 (251)
473 PRK05597 molybdopterin biosynt 93.2 0.058 1.3E-06 58.7 2.9 33 309-341 29-62 (355)
474 PRK06196 oxidoreductase; Provi 93.2 0.22 4.8E-06 53.2 7.3 42 309-350 27-69 (315)
475 PRK05600 thiamine biosynthesis 93.2 0.073 1.6E-06 58.2 3.6 32 309-340 42-74 (370)
476 PLN03209 translocon at the inn 93.2 0.43 9.4E-06 54.6 9.8 41 309-349 81-122 (576)
477 PRK07062 short chain dehydroge 93.1 0.21 4.6E-06 51.7 6.8 41 309-349 9-50 (265)
478 PRK06194 hypothetical protein; 93.1 0.21 4.6E-06 52.4 6.8 41 309-349 7-48 (287)
479 PRK07877 hypothetical protein; 93.0 0.18 3.9E-06 59.5 6.8 32 309-341 108-141 (722)
480 PRK14176 bifunctional 5,10-met 93.0 0.26 5.5E-06 51.4 7.1 72 309-424 165-237 (287)
481 PRK05786 fabG 3-ketoacyl-(acyl 93.0 0.52 1.1E-05 47.7 9.5 41 309-349 6-47 (238)
482 PRK08267 short chain dehydroge 93.0 0.15 3.3E-06 52.6 5.6 40 308-347 1-41 (260)
483 TIGR01850 argC N-acetyl-gamma- 93.0 0.23 4.9E-06 53.9 7.1 99 310-429 2-105 (346)
484 PRK07774 short chain dehydroge 93.0 0.2 4.4E-06 51.2 6.4 39 309-347 7-46 (250)
485 PRK08340 glucose-1-dehydrogena 93.0 0.22 4.7E-06 51.5 6.7 42 310-351 2-44 (259)
486 PRK05690 molybdopterin biosynt 93.0 0.22 4.7E-06 51.3 6.5 33 309-341 33-66 (245)
487 PF01039 Carboxyl_trans: Carbo 92.9 0.66 1.4E-05 52.9 10.9 164 18-201 298-479 (493)
488 PLN03075 nicotianamine synthas 92.9 0.48 1E-05 49.8 9.0 100 309-423 125-233 (296)
489 PRK07454 short chain dehydroge 92.9 0.22 4.8E-06 50.7 6.5 40 308-347 6-46 (241)
490 PF12847 Methyltransf_18: Meth 92.9 0.29 6.4E-06 43.2 6.5 95 309-421 3-109 (112)
491 PRK12429 3-hydroxybutyrate deh 92.9 0.24 5.3E-06 50.8 6.8 41 309-349 5-46 (258)
492 cd05211 NAD_bind_Glu_Leu_Phe_V 92.8 0.27 5.9E-06 49.5 6.8 33 309-341 24-57 (217)
493 PRK13394 3-hydroxybutyrate deh 92.8 0.26 5.6E-06 50.8 6.9 42 309-350 8-50 (262)
494 PRK08223 hypothetical protein; 92.8 0.36 7.8E-06 50.5 7.8 33 309-341 28-61 (287)
495 PRK07890 short chain dehydroge 92.8 0.25 5.3E-06 50.9 6.7 41 309-349 6-47 (258)
496 PRK06057 short chain dehydroge 92.7 0.21 4.6E-06 51.4 6.1 39 309-347 8-47 (255)
497 COG0136 Asd Aspartate-semialde 92.7 0.55 1.2E-05 49.8 9.0 98 309-429 2-103 (334)
498 PRK09186 flagellin modificatio 92.7 0.27 5.9E-06 50.5 6.9 42 309-350 5-47 (256)
499 TIGR02355 moeB molybdopterin s 92.7 0.22 4.7E-06 51.1 6.0 34 309-342 25-59 (240)
500 PRK15116 sulfur acceptor prote 92.6 0.29 6.3E-06 50.8 6.9 33 309-341 31-64 (268)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=3.4e-130 Score=1137.86 Aligned_cols=698 Identities=34% Similarity=0.547 Sum_probs=619.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCcccCCCCchhhhhccCCC
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~v-vl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|+++++.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+| |+||.|++||+|+|++++.......
T Consensus 10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 6788899998 8899999999995 6999999999999999999999999975 5699999999999999986421111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCccccCCCCCChhhhhhhccccC
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
....+....++++ .+|.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|++|++++|||++|
T Consensus 89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 1222223345666 6799999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCc-------------chHHHHHHHHHHHHHccCchhhhhhhccCCCCC--c
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGS--L 220 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~--~ 220 (733)
..+|++|+++|++++|+||+++||||+|+|+ +++.+.|.+++.+++..+....+......+... .
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999986 557888888888876543221110000011100 0
Q ss_pred ---HHHHHHHHHHHHH-HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 221 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 221 ---~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
......+..++.+ .++++++||||.+++++|+.+...+++++++.|++.|.+++.|++++++++.|+.+|..++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~ 327 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK 327 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 1122344444444 457888899999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc
Q 004726 297 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (733)
Q Consensus 297 ~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 376 (733)
. ...++++++|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|
T Consensus 328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3 124578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCee
Q 004726 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (733)
Q Consensus 377 ~~~~~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lv 456 (733)
+++++++++++||+|||||||++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+++|
T Consensus 404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737)
T TIGR02441 404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737)
T ss_pred EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHH
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD 536 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D 536 (733)
||++++.|++++++++..|++.+||.||+++|+||||+||++.++++||++++++|++|+|||+++.++|+|||||+++|
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D 563 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD 563 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC--CCCCCCCchhHHHHHhhhccCCCC
Q 004726 537 LAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPG 612 (733)
Q Consensus 537 ~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 612 (733)
.+|||++.++.+.+...+++++. |++++++|+++|++|+|||+|||+|++++ ++.+++.+..++..... .|.
T Consensus 564 ~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~ 639 (737)
T TIGR02441 564 EVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK 639 (737)
T ss_pred HhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc
Confidence 99999999999999999887653 68999999999999999999999998654 35677777766644321 111
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC
Q 004726 613 GKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN 692 (733)
Q Consensus 613 ~~~~~~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~ 692 (733)
....+++||+||++.+++|||++||+|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+++.+|+
T Consensus 640 --~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~ 717 (737)
T TIGR02441 640 --AEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGV 717 (737)
T ss_pred --cccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 113578999999999999999999999997799999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHC-CCCc
Q 004726 693 FFKPSRFLEERATK-GIPL 710 (733)
Q Consensus 693 ~~~p~~~l~~~~~~-g~~g 710 (733)
+|.|+++|++|+++ |+.|
T Consensus 718 ~~~p~~lL~~~~~~~g~~f 736 (737)
T TIGR02441 718 QFTPCQLLLDHAKSPGKKF 736 (737)
T ss_pred CcCCCHHHHHHHHhcCCCC
Confidence 99999999999998 7753
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=7.2e-129 Score=1124.92 Aligned_cols=696 Identities=31% Similarity=0.527 Sum_probs=617.2
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC
Q 004726 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~--~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|++. ++.++..+++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 80 (714)
T TIGR02437 1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP 80 (714)
T ss_pred CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence 5655 5778754689999999999 689999999999999999999999999999999999999999999986421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
....+....++++ .+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG 159 (714)
T TIGR02437 81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG 159 (714)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence 1112223345566 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCC----cHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR 231 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 231 (733)
..+|++|++||++++|++|+++||||+++|++++.+++.++++++......+.+.. ...... .......+...+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAK 237 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765432221111 111111 111111233344
Q ss_pred H-HHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcce
Q 004726 232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (733)
Q Consensus 232 ~-~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~k 310 (733)
. ..++++++||||..++++++++...+++++++.|++.|.+++.|+++++++++|+.+|..++.+.. .+..+++++|
T Consensus 238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~ 315 (714)
T TIGR02437 238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQ 315 (714)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccce
Confidence 4 456788999999999999999999999999999999999999999999999999999999876521 1245678999
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++++.+..+++|+++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (714)
T TIGR02437 316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI 395 (714)
T ss_pred EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHH
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~ 470 (733)
|||||||++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+|+|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~ 475 (714)
T TIGR02437 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA 475 (714)
T ss_pred EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004726 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (733)
Q Consensus 471 ~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 549 (733)
++.++++.+||.||+++|+||||+||++.++++||++|+++|++|++||+++ .++|||||||+++|.+|||+.+++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~ 555 (714)
T TIGR02437 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV 555 (714)
T ss_pred HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHH
Q 004726 550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 623 (733)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (733)
++..+++++. +++++++|+++|++|+|||+|||+|+++. +..+|+++..++...+. ....+++++|
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i 627 (714)
T TIGR02437 556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY--------EQRDFDDEEI 627 (714)
T ss_pred HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc--------ccCCCCHHHH
Confidence 9998887642 56899999999999999999999996431 24466666655543321 0124678899
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 004726 624 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 703 (733)
Q Consensus 624 ~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~ 703 (733)
+||++.+++||+++||+|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+. .++++|.|+++|++|
T Consensus 628 ~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~ 706 (714)
T TIGR02437 628 IARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREM 706 (714)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHH
Confidence 9999999999999999999777999999999999999999999999999999999999999765 789999999999999
Q ss_pred HHCCCCc
Q 004726 704 ATKGIPL 710 (733)
Q Consensus 704 ~~~g~~g 710 (733)
+++|+.|
T Consensus 707 ~~~g~~f 713 (714)
T TIGR02437 707 AKNGQSF 713 (714)
T ss_pred HHcCCCC
Confidence 9988743
No 3
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.7e-127 Score=1114.04 Aligned_cols=696 Identities=32% Similarity=0.552 Sum_probs=615.4
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC
Q 004726 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~--~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|++. ++.++..+++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (715)
T PRK11730 1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP 80 (715)
T ss_pred CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence 6665 5777743689999999999 579999999999999999999999999999999999999999999875421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
....+....++++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG 159 (715)
T PRK11730 81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159 (715)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence 0112222334555 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCc----HHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR 231 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 231 (733)
..+|++|++||++++|+||+++||||+|||++++++++.++|++++..+..+... +....++. ......++..+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~--~~~~~~p~a~~~~~~~~~~~~~k 237 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR--RQPKLEPLKLSKIEAMMSFTTAK 237 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc--cCcccccccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999764322111 11111111 11112233333
Q ss_pred HH-HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcce
Q 004726 232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (733)
Q Consensus 232 ~~-~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~k 310 (733)
+. .++++++||++..++++++.+...+++++++.|.+.|..++.|+|++|++++|+++|..++.+... ...+++++|
T Consensus 238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~ 315 (715)
T PRK11730 238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQ 315 (715)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccce
Confidence 32 367889999999999999999999999999999999999999999999999999999998765321 234567999
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV 395 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHH
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~ 470 (733)
|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004726 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (733)
Q Consensus 471 ~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~ 549 (733)
.+.+|++.+||.||+++|+||||+||++.++++||++++++|++++|||+++ .++|+|+|||+++|.+|||++.++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~ 555 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHH
Q 004726 550 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI 623 (733)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 623 (733)
++..++++.. +++++++|+++|++|+|||+|||+|+++. +..+|+.+..++..... ....+++++|
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i 627 (715)
T PRK11730 556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ--------PKREFSDEEI 627 (715)
T ss_pred HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc--------ccCCCCHHHH
Confidence 9998887643 57899999999999999999999997432 23455555555543211 0124678899
Q ss_pred HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 004726 624 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER 703 (733)
Q Consensus 624 ~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~ 703 (733)
.||++.+++|||++|++||++.+|+|||.+|++|+|||+|+||||+++|.+|+|.++++++.+. .++++|+|+++|++|
T Consensus 628 ~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~ 706 (715)
T PRK11730 628 IARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREM 706 (715)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHH
Confidence 9999999999999999999866999999999999999999999999999999999999999875 588999999999999
Q ss_pred HHCCCCc
Q 004726 704 ATKGIPL 710 (733)
Q Consensus 704 ~~~g~~g 710 (733)
+++|+.|
T Consensus 707 v~~~~~f 713 (715)
T PRK11730 707 AANGESY 713 (715)
T ss_pred HHcCCCC
Confidence 9988754
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2e-126 Score=1105.46 Aligned_cols=688 Identities=35% Similarity=0.575 Sum_probs=606.5
Q ss_pred EEEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCcccCCCCchhhhhccCCCccccc
Q 004726 6 VTMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p-~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
++++..+++|++|||||| . .|+||.+|+++|.++++.++.|+++|+||| +|.|++||+|+|++++...........+
T Consensus 2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 344554789999999999 3 699999999999999999999999999987 6888999999999988542111111122
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
....++++ ..+.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~ 160 (699)
T TIGR02440 82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 160 (699)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence 22344566 6799999999999999999999999999999999976 79999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhh-ccCCCCCcHHHHHHHHHHHH-HHHHhC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH-RTDKLGSLSEAREVLKLARL-QAKKTA 238 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (733)
+|+++|++++|+||+++||||+|+|++++++++.++|++. ..+....... +....++. .....+....+ ..++++
T Consensus 161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--KPIRKPLSLQERLLEGTPL-GRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--CCCCCCccchhhhcccCch-hHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999751 0000000000 00000011 11112222233 356788
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCc
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 318 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VIG~G~ 318 (733)
++|||++++|++++.+...+++++++.|++.|..++.|+|+++++++|+.++..++.++. . ..+++++||+|||+|+
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence 899999999999999999999999999999999999999999999999999998876552 2 2346789999999999
Q ss_pred CcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccC
Q 004726 319 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (733)
Q Consensus 319 mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe 397 (733)
||++||..++ ++|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+.+|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHH
Q 004726 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477 (733)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~ 477 (733)
++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.+|++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004726 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (733)
Q Consensus 478 ~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (733)
.+||.||+++|.|||++||++.++++||++++++|++++|||.+++++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHcCCCCcccCccccccCCCC-CCCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004726 558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC 636 (733)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 636 (733)
+.|++++++|+++|++|+|||+|||+|++++ ++.+++.+..++. ..+ ...+++++++||++.+++|||+
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~v~~Rll~~~~~Ea~ 624 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKP---GVDKEASAVAERCVMLMLNEAV 624 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998643 3445554443331 111 1247899999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCc
Q 004726 637 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710 (733)
Q Consensus 637 ~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 710 (733)
+|++|||+.+|+|||.+|++|+|||+|++|||+++|.+|+|.++++++.+++.+|++|+|+++|++|+++|+.|
T Consensus 625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f 698 (699)
T TIGR02440 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSF 698 (699)
T ss_pred HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCc
Confidence 99999996699999999999999999999999999999999999999999999999999999999999998854
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.9e-126 Score=1105.92 Aligned_cols=690 Identities=35% Similarity=0.576 Sum_probs=609.4
Q ss_pred cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcccc
Q 004726 5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 5 ~v~~~~~~~~i~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
.++++.++++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||+|.+ ++||+|+|++++...........
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 4667775689999999999 57999999999999999999999999999999864 89999999998754221111112
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 222344556 6799999999999999999999999999999999986 4899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHH-HHHHhC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL-QAKKTA 238 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (733)
++|+++|++++|+||+++||||+++|++++.+++.++|+++....+ ......+....++. .....+..++. ..++++
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLPVRERLLEGNPL-GRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCCchhhhcccCch-hHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988421110 00000000000011 11122333333 345788
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCc
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 318 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VIG~G~ 318 (733)
++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.+|..++.+.. . ..+++++||+|||+|.
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 899999999999999999999999999999999999999999999999999998876552 2 2446799999999999
Q ss_pred CcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccC
Q 004726 319 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (733)
Q Consensus 319 mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe 397 (733)
||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHH
Q 004726 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477 (733)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~ 477 (733)
++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+++|||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004726 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (733)
Q Consensus 478 ~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (733)
.+||.|++++|.||||+||++.++++||++++++|++++|||.++.++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999887
Q ss_pred CCCcHHHHHHHHcCCCCcccCccccccCCCCC---CCCCCCchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHH
Q 004726 558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK---PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNE 634 (733)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e 634 (733)
+.|++++++|+++|++|+|||+|||+|+++++ +.+++.+...+. ..+ ...++++||+||++.+++||
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~i~~Rll~~~~nE 629 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITP---QSRLSANEIAERCVMLMLNE 629 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCC---CCCCCHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999975322 334444433321 111 12478999999999999999
Q ss_pred HHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCc
Q 004726 635 SCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710 (733)
Q Consensus 635 a~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 710 (733)
|++|++|||+.+++|||.+|++|+|||+|+||||+++|.+|+|.+++.++.+++.++++|.|+++|++|+++|+.|
T Consensus 630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f 705 (708)
T PRK11154 630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESF 705 (708)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCC
Confidence 9999999996699999999999999999999999999999999999999999999999999999999999998864
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1e-73 Score=638.38 Aligned_cols=400 Identities=32% Similarity=0.521 Sum_probs=356.5
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+++||+|||+|.||++||.+++++|++|++||++++.++++.+++++.++.++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|.+++|+|||+|++.++++|+++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++++.++++.+||.|+++++.|||++||++.++++||+.++++| ++|++||+++ .++|||||||+++|++|+|+.+
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999998 5999999999 6899999999999999999999
Q ss_pred HHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccccccCCCCCCCCC-----------------------------
Q 004726 545 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD----------------------------- 593 (733)
Q Consensus 545 ~~~~~l~~~~-~~~~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~----------------------------- 593 (733)
++++.+++.+ ++..+ |++++++|+++|++|+|||+|||+|+++......
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988874 55444 7899999999999999999999999764322111
Q ss_pred -----------------------------------------CCchhHHHHHhhhccC--CCC------------------
Q 004726 594 -----------------------------------------PSVLPIIEECRRLSNI--MPG------------------ 612 (733)
Q Consensus 594 -----------------------------------------~~~~~~~~~~~~~~~~--~~~------------------ 612 (733)
+.+..++...+....+ .+.
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 0000000000000000 110
Q ss_pred CC-Cccc--chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHH
Q 004726 613 GK-PISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL 689 (733)
Q Consensus 613 ~~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~ 689 (733)
++ +..+ +++||+||++++++|||+++++||++ +++|||.+|++|+|||+ |||+++|.+|+|.++++++.+++.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 00 0011 35999999999999999999999999 99999999999999999 999999999999999999999999
Q ss_pred hC-CCCCCCHHHHHHHHCCCCc
Q 004726 690 YG-NFFKPSRFLEERATKGIPL 710 (733)
Q Consensus 690 ~~-~~~~p~~~l~~~~~~g~~g 710 (733)
++ ++|+|+++|++|++.|..+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~ 501 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGY 501 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCc
Confidence 98 5899999999999998765
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.5e-72 Score=627.36 Aligned_cols=402 Identities=32% Similarity=0.540 Sum_probs=358.8
Q ss_pred CCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 305 ~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.+++++|+|||+|.||++||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.+..++++..+++++.
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+++||+|||||||+.++|+.+|++++..+++++|++||||++++++++..+.+|+|++|+|||+|++.++++|+++++.|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHH
Q 004726 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGV 542 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~ 542 (733)
++++++++.++++.+||.|++++|.|||++||++.++++|+++++++| +++++||+++ .++|||||||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 999999999999999999999999999999999999999999999998 5999999999 78999999999999999999
Q ss_pred HHHHHHHHHHhC-CC-CCCCcHHHHHHHHcCCCCcccCccccccCCCCC-CCCCCCchhH----------------HHHH
Q 004726 543 AAATSKEFDKAF-PD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSVLPI----------------IEEC 603 (733)
Q Consensus 543 ~~~~~~~l~~~~-~~-~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~-~~~~~~~~~~----------------~~~~ 603 (733)
.+++.+.+...+ ++ ++.|++++++|+++|++|+|+|+|||+|+++++ ..++++.... +...
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL 323 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence 999999988764 34 444789999999999999999999999975433 2223221100 0000
Q ss_pred h------------------------------h--hcc-----------CCCC--CCCccc--------------------
Q 004726 604 R------------------------------R--LSN-----------IMPG--GKPISV-------------------- 618 (733)
Q Consensus 604 ~------------------------------~--~~~-----------~~~~--~~~~~~-------------------- 618 (733)
. . ... +.|. .+..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~ 403 (507)
T PRK08268 324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ 403 (507)
T ss_pred HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0 000 0000 011111
Q ss_pred ----------chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHH
Q 004726 619 ----------TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ 688 (733)
Q Consensus 619 ----------~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~ 688 (733)
+++||+||++.+++|||++|++|||+ +|+|||.+|++|+|||+ |||+++|.+|+|.++++++.+++
T Consensus 404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~ 479 (507)
T PRK08268 404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA 479 (507)
T ss_pred cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence 68999999999999999999999998 99999999999999999 99999999999999999999999
Q ss_pred HhCC-CCCCCHHHHHHHHCCCCc
Q 004726 689 LYGN-FFKPSRFLEERATKGIPL 710 (733)
Q Consensus 689 ~~~~-~~~p~~~l~~~~~~g~~g 710 (733)
.+|+ +|+|+++|++|+++|+.|
T Consensus 480 ~~g~~~~~p~~ll~~~v~~G~~~ 502 (507)
T PRK08268 480 LYGDPRYRPSPWLRRRAALGLSL 502 (507)
T ss_pred HhCCCcCCcCHHHHHHHHcCCCc
Confidence 9985 999999999999998754
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=1.5e-64 Score=520.62 Aligned_cols=280 Identities=40% Similarity=0.682 Sum_probs=270.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.++||+|||+|.||++||..++..|++|+++|++++.++++...+++.+++++++|.+++++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+|||+|||++++|+++|++++.++++++|++||||+++++++++.+.+|+||+|+|||||++.+++||++++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++++.+|++.+||.|++++|.||||+||++.++++||++++++|+ +|++||+++ .++|+|||||+++|++|+|+.+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999995 999999999 7899999999999999999999
Q ss_pred HHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccccccCC
Q 004726 545 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK 586 (733)
Q Consensus 545 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (733)
++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888843 33 789999999999999999999999975
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-62 Score=462.67 Aligned_cols=280 Identities=32% Similarity=0.577 Sum_probs=266.2
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHH-----HHHHhhcccccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-----ANNALKMLKGVL 380 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~-----~~~~~~~i~~~~ 380 (733)
.+++.|+|||+|.||++||+..+.+|++|+++|++++++.++.+.|.+.+.+..+++..+... ++..+.+|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999999999999999999999999999999888776544 367788999999
Q ss_pred Cc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe
Q 004726 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 459 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv 459 (733)
+. ++++++|+|||++.|++++|+.+|++++..+++++|++||||++.+++++..+.+|.||.|+|||||+++|.+||++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 88 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHh
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL 537 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~ 537 (733)
.+..|+++++..+..|.+.+||++|-++|.||||+||++.+|+.||+++++.|. +.+|||.+| .|.|+||||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 999999999 899999999999999
Q ss_pred hchHHHHHHHHHHHHhCCCC--CCCcHHHHHHHHcCCCCcccCccccccC
Q 004726 538 AGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE 585 (733)
Q Consensus 538 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (733)
+|||++.-+++.+++.++++ +.|+|++.++|++|++|+|+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998653 3499999999999999999999999993
No 10
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=9.3e-59 Score=485.93 Aligned_cols=279 Identities=34% Similarity=0.551 Sum_probs=270.0
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
++++||+|||+|.||.+||..++++|++|++||++++.++++.+++++.+++++++|.+++.+.+..+++++++++++.+
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhC-CCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
++||+|||||||+.++|+++|+++++.+ ++++|++||||++++++++....+|+|++|+|||+|++.++++||+++..|
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-HcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004726 465 SAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 465 ~~e~~~~~~~l~~-~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld 541 (733)
++++++++.+++. .+||.|++++|.|||++||++.+++|||++++++|+ +|+|||+++ .++|||+|||+++|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence 9999999999988 599999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCcccccc
Q 004726 542 VAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTY 584 (733)
Q Consensus 542 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (733)
++.++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 99999999999998755 48999999999999999999999998
No 11
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=4.4e-59 Score=474.72 Aligned_cols=376 Identities=39% Similarity=0.637 Sum_probs=345.2
Q ss_pred CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccCC
Q 004726 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 398 (733)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe~ 398 (733)
||++||.++..+|++|++.|.+...++++..++...+...+..+.++..+.......+..+.|++.+++||+|||+|.||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHH
Q 004726 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478 (733)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 478 (733)
+++|++++.+|++++++.+|+.+|||++++.++++.+..+++++|+|||+|.+.++++|++.+.+|+..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004726 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (733)
Q Consensus 479 lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~-Gv~~~dID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (733)
.|+.|+++++++||.+||++.+|.+++.+++.+ |++|.++|.+...||||+||+++.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999999988 9999999999999999999999999999999888776665555443
Q ss_pred CCCcHHHHHHHHcCCCCcccCccccccCCCCCCCCCC-CchhHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 004726 558 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC 636 (733)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 636 (733)
+.++|++.|+.|+|||+|||.|+.+..+..++ +..+.+... . ....+...+++++++|++++++|||+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l---~---~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRL---S---LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHh---c---cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 78999999999999999999998765444444 233333322 2 11223457899999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCc
Q 004726 637 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 710 (733)
Q Consensus 637 ~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~g 710 (733)
+|++||+..+++++|.+.++|+|||+++||||.|+|..|++.++..++.|+. |+|+++|++++++|+.+
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~ 378 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKF 378 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999999999999875 99999999999987755
No 12
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2e-54 Score=455.91 Aligned_cols=279 Identities=29% Similarity=0.443 Sum_probs=264.5
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHH-HHHHhhccccccCc-cc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDY-SE 384 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~ 384 (733)
+++||+|||+|.||++||..++++|++|++||++++.++++.+.+++.+....+.+.++.++ .+....++..++++ ++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46799999999999999999999999999999999999999998888888888888888776 66777889888888 46
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+++||+||+|+||+.++|+.+++++.+.+++++||++|+|+++++++++.+.+++||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004726 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld 541 (733)
++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +|+|||+++ .++|+|+|||+++|.+|||
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999999 599999999999999999999999996 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccC
Q 004726 542 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE 585 (733)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~Gfy~y~ 585 (733)
++.++++.+++.++++++ |++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 88999999999999999999999994
No 13
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.2e-53 Score=450.48 Aligned_cols=281 Identities=32% Similarity=0.512 Sum_probs=267.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++||+|||+|.||.+||..|+++|++|++||++++.++++.+.+...++..++.+.++..+.+....++..++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999988888888888889999988888888899888888 6789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+|+|++.++|+.+++++.+.+++++|+++|+|+++++++++...++.+++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++++.++++.+|+.|++++|.|||++||++.++++||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999996 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCCC
Q 004726 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS 588 (733)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~ 588 (733)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999998877799999999999999999999999997643
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.8e-53 Score=449.74 Aligned_cols=278 Identities=31% Similarity=0.549 Sum_probs=263.7
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHH---HHHHhHhcCCCCHHHHHHHhhccccccCcc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~---~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (733)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++++ .++..++.|.++..+.+..+.++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46899999999999999999999999999999999999988877766 367778889888888888888888888877
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~ 463 (733)
.+++||+||+|+||+.++|+++++++.+.+++++||+|+||+++++++++.+.++.|++|+||++|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld 541 (733)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCccc-----Ccccccc
Q 004726 542 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTY 584 (733)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~g~~G~k~-----g~Gfy~y 584 (733)
++.++++.+++.++++++ |++++++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 999999999999988654 889999999999999999 9999998
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.2e-53 Score=447.32 Aligned_cols=278 Identities=36% Similarity=0.607 Sum_probs=267.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.|+||+|||+|.||.+||..++++|++|+++|++++.++++.+++++.++...+.|.++..+......++..+++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 36799999999999999999999999999999999999999999999999999999999888888888998888887799
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+|+||++++|+++++++.++++++++|+|+||+++++.+++.+.++.|++++||++|++.++++|++++..|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++.+.++++.+|+.|++++|.|||++||++.+++|||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCcccccc
Q 004726 545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTY 584 (733)
Q Consensus 545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y 584 (733)
++++.+++.++++. .|++++++|+++|++|+|+|+|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 99999999998754 48899999999999999999999998
No 16
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=4e-53 Score=448.20 Aligned_cols=282 Identities=32% Similarity=0.567 Sum_probs=269.7
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+++||+|||+|.||.+||..|+++|++|++||++++.++++.+++++.++.+++.|.++.++.+..++++.++++.+.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999998888888888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+||||++++|+.+++++.+.+++++||+||||+++++++++.+.++.+++++||++||+.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++.+.++++.+|+.++++++.|||++||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999996 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCccccccCCCC
Q 004726 545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEKGS 588 (733)
Q Consensus 545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~~ 588 (733)
++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 99999999998754 488999999999999999999999997654
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-52 Score=443.08 Aligned_cols=281 Identities=32% Similarity=0.515 Sum_probs=267.3
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.+...++.|.++..+....+.++..+++++.++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999999888988888889999999888888888899888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+||||+.++|+.+++++.+.++++++|+|+||+++++++++.+.++++++|+||++|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~ 544 (733)
++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||+++ .++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCccccccCCC
Q 004726 545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (733)
Q Consensus 545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (733)
++++.+++.++++. .|++++.+|++.|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 99999999988754 48899999999999999999999999654
No 18
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.1e-51 Score=433.03 Aligned_cols=268 Identities=28% Similarity=0.411 Sum_probs=255.4
Q ss_pred CcHHHHHHHHHCCCeeEEEeCChH-------HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC--c-cccCCC
Q 004726 319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 388 (733)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e-------~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a 388 (733)
||++||..++.+|++|+++|++++ .++++.+++++.++.++++|.++.++.+..+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477788999999999999999999999999999998865 3 678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHH
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~ 468 (733)
|+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhchHHH
Q 004726 469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA 543 (733)
Q Consensus 469 ~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p---~Gpf~~~D~~Gld~~ 543 (733)
++++.++++.+|+.|++++|.|||++||++.++++|++.++++| +++++||.++ .++|+| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999998 5999999999 799999 699999999999999
Q ss_pred HHHHHHHHHhCCC-CCCCcHHHHHHHHcCCCCcccCccccccCC
Q 004726 544 AATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEK 586 (733)
Q Consensus 544 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~ 586 (733)
.++++.+++.+++ ++.|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998888 555899999999999999999999999964
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.4e-51 Score=431.43 Aligned_cols=277 Identities=23% Similarity=0.318 Sum_probs=248.9
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
++++||+|||+|+||++||..++++|++|++||++++.++++.+.+.+.++.+.+.+. ... ...+++.+++++ ++
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-APG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Chh---hHHhhceecCCHHHH
Confidence 4578999999999999999999999999999999999999998899988988888873 332 334688888888 67
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+++||+|||||||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+++||||||+.+|+|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004726 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA 538 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p---~Gpf~~~D~~ 538 (733)
++++++++.+|++.+||+||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999996 999999999 799998 8999999999
Q ss_pred chHH-HHHHHHHHHHhCCCC---CCCcHHHHHHHH------cCCCCcccCccccccCC
Q 004726 539 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK 586 (733)
Q Consensus 539 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~g~~G~k~g~Gfy~y~~ 586 (733)
|+|. +.+.++++.+.+.+. ..+|++..+|++ ++.+|.++.+++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9997 555556665554221 224556777777 68999999999999964
No 20
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-50 Score=395.34 Aligned_cols=249 Identities=33% Similarity=0.513 Sum_probs=224.1
Q ss_pred EEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhH
Q 004726 8 MEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS 86 (733)
Q Consensus 8 ~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (733)
+...+++|+.||||||+ +|+|+..++.+|.++|..+++|+.+.++||||.|+.||+|+|++++.......-... ..
T Consensus 40 ~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~---~~ 116 (290)
T KOG1680|consen 40 LVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDG---IF 116 (290)
T ss_pred EeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccc---cc
Confidence 33337899999999995 799999999999999999999999999999999999999999999977433221111 12
Q ss_pred HHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcC
Q 004726 87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS 166 (733)
Q Consensus 87 ~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG 166 (733)
.+.+ ..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|++|||++|+|.||.++|++|++||
T Consensus 117 ~~~~-~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg 195 (290)
T KOG1680|consen 117 LRVW-DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTG 195 (290)
T ss_pred cchh-hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhc
Confidence 2333 345579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHH
Q 004726 167 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 246 (733)
Q Consensus 167 ~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 246 (733)
++++|+||+++|||++|||.++++.+|.+|+++|++.|+..++ +
T Consensus 196 ~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~------------------------------------~ 239 (290)
T KOG1680|consen 196 RRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR------------------------------------A 239 (290)
T ss_pred CcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH------------------------------------H
Confidence 9999999999999999999999999999999999999875433 5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 247 CLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 247 ~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.|++++.+.+.++.+++..|...|...+.++|.+|+|.+|.+||++++..
T Consensus 240 ~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~k 289 (290)
T KOG1680|consen 240 DKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFSK 289 (290)
T ss_pred HHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccccc
Confidence 67889999999999999999999999999999999999999999998753
No 21
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-49 Score=408.52 Aligned_cols=253 Identities=30% Similarity=0.471 Sum_probs=228.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (257)
T PRK05862 1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M 76 (257)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence 8888899998 7899999999995 799999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+.......+ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 155 (257)
T PRK05862 77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 11112233445 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.++.++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------------- 204 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAV------------------------------- 204 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998876543
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|++++.....++.++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus 205 -----~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 205 -----MMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 35678888887889999999999999999999999999999999998775
No 22
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-49 Score=408.79 Aligned_cols=255 Identities=40% Similarity=0.651 Sum_probs=227.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+ ++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++..........
T Consensus 1 ~~--~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 77 (257)
T PRK07658 1 MK--FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQAT 77 (257)
T ss_pred Cc--eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHH
Confidence 55 678888 789999999999889999999999999999999999999999999999999999999875432111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+....+.++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK07658 78 ELAQLGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL 156 (257)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence 1222334556 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.+|.++
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~-------------------------------- 204 (257)
T PRK07658 157 EMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATT-------------------------------- 204 (257)
T ss_pred HHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999876433
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..+|++++.+...+++++++.|...+..++.|+|+++++++|++||+|++.
T Consensus 205 ----~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~ 255 (257)
T PRK07658 205 ----RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFS 255 (257)
T ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 256777887777889999999999999999999999999999999988753
No 23
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-49 Score=406.53 Aligned_cols=254 Identities=33% Similarity=0.548 Sum_probs=225.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCC-
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~- 77 (733)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 78 (260)
T PRK05980 1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA 78 (260)
T ss_pred CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence 66 4688888 8899999999994 7999999999999999999999999999999998 6999999999875421111
Q ss_pred --cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (260)
T PRK05980 79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG 157 (260)
T ss_pred hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence 1112222233455 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (733)
..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.+|.+++
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 211 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVA-------------------------- 211 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999998765432
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 236 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
.+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+
T Consensus 212 ----------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 212 ----------AILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 457778877778899999999999999999999999999999999875
No 24
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.2e-48 Score=405.82 Aligned_cols=255 Identities=33% Similarity=0.545 Sum_probs=229.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ..
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE 78 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence 8999999998 7899999999995 7999999999999999999999999999999999 89999999998754221 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111222234555 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|+|++++++.+.+++++++..+|.++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------ 207 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAV------------------------------ 207 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|+.++.+...+++++++.|.+.+..++.|+|+++++++|++||+|++
T Consensus 208 ------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 208 ------KLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 25677888888888999999999999999999999999999999998775
No 25
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.9e-49 Score=409.15 Aligned_cols=256 Identities=28% Similarity=0.419 Sum_probs=226.0
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC--
Q 004726 1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (733)
Q Consensus 1 m~-~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-- 76 (733)
|+ ++.+.+++ +++|++|||||| +.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 55 57899998 889999999999 57999999999999999999999999999999999999999999987542110
Q ss_pred -----Ccccc---cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh
Q 004726 77 -----GDVSL---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 77 -----~~~~~---~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
..... ......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 00011 112234555 568999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHH
Q 004726 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (733)
Q Consensus 149 ~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (733)
+|++++|..+|++|+++|++++|+||+++||||+|+|+ +++++++.+++++++..||.+++
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------ 221 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------ 221 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999985 88999999999999998875433
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++
T Consensus 222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998774
No 26
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-48 Score=404.09 Aligned_cols=252 Identities=31% Similarity=0.474 Sum_probs=224.7
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcccccc
Q 004726 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP 83 (733)
Q Consensus 5 ~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (733)
.+.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++..... .....+.
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~ 81 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK-AVAREMA 81 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh-hhHHHHH
Confidence 478888 78999999999988999999999999999999999999999999998 68999999998754211 1111122
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHH
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ 163 (733)
.....++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus 82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2234555 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchH
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (733)
++|++++|+||+++||||+|+|++++++++.+++++++..+|.+++
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------------- 206 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA---------------------------------- 206 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....++++.++.|...+..++.++++++++++|++||+|++.
T Consensus 207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 256 (258)
T PRK09076 207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWK 256 (258)
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 45677777777789999999999999999999999999999999988753
No 27
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-48 Score=404.32 Aligned_cols=255 Identities=25% Similarity=0.380 Sum_probs=226.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++ |+++|+|||+|.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence 8889999998 7899999999995 79999999999999999999 99999999999999999999999875321111
Q ss_pred ccc-ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 78 DVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 78 ~~~-~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
... .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 000 1111223345 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.+|.+++
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~--------------------------- 210 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLA--------------------------- 210 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998765332
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 211 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 211 ---------LIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred ---------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998775
No 28
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-48 Score=402.59 Aligned_cols=252 Identities=25% Similarity=0.410 Sum_probs=224.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+..++.++..+++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 81 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS 81 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence 67778999975789999999999 47999999999999999999999999999999998 69999999998754221 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+....+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 112223334556 6789999999999999999999999999999999999999999999998 88888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|||++++.+++.+++++++..||.+++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 210 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR----------------------------- 210 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|+.++.....+++++++.|...+..++.|+|+++++++|++||+
T Consensus 211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 4567777777788999999999999999999999999999999985
No 29
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-48 Score=401.26 Aligned_cols=252 Identities=29% Similarity=0.434 Sum_probs=223.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.|.+++ +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++...... .....
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~-~~~~~ 77 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAG-EGMHH 77 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccch-hHHHH
Confidence 4578888 7899999999995 79999999999999999997 789999999999999999999988542211 11112
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 22344556 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
+++|++++|+||+++||||+|||++++.+.+.++|+++++.+|.+++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 203 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF--------------------------------- 203 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875432
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+.++
T Consensus 204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 456777777778899999999999999999999999999999999987643
No 30
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-48 Score=401.79 Aligned_cols=255 Identities=26% Similarity=0.366 Sum_probs=224.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence 8899999998 7899999999995 7999999999999999999999999999999999999999999987542111101
Q ss_pred ccc--chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 80 SLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 80 ~~~--~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
... .....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~ 157 (262)
T PRK05995 80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER 157 (262)
T ss_pred hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence 111 12234556 67899999999999999999999999999999999999999999999999988765 589999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
+|++|+++|++++|+||+++||||+|+|++++.+++.+++++++..++.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR---------------------------- 209 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999988765432
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++.+. ++.|...+..++.|+|+++++++|++||+|.+
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 45677777777788888 88999999999999999999999999998875
No 31
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=4.5e-48 Score=399.69 Aligned_cols=252 Identities=31% Similarity=0.457 Sum_probs=225.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|| .+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~ 74 (255)
T PRK09674 1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A 74 (255)
T ss_pred Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence 55 477887 7899999999996 699999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++
T Consensus 75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 153 (255)
T PRK09674 75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA 153 (255)
T ss_pred hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence 11122233455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 203 (255)
T PRK09674 154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR------------------------------ 203 (255)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++++.++.|.+.+..++.++++++++++|++||+|++.
T Consensus 204 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~ 253 (255)
T PRK09674 204 ------AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFK 253 (255)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 45677777778889999999999999999999999999999999988753
No 32
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.1e-48 Score=401.98 Aligned_cols=255 Identities=23% Similarity=0.338 Sum_probs=224.9
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
..+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 9 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 87 (266)
T PRK08139 9 EAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFR 87 (266)
T ss_pred cCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHH
Confidence 456788888 8899999999995 69999999999999999999999999999999999999999999875422111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|..+|+
T Consensus 88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 88 ALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 1222234555 568999999999999999999999999999999999999999999999999875 56899999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.++.+++
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 214 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------- 214 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875433
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||++++.
T Consensus 215 -----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 264 (266)
T PRK08139 215 -----IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWR 264 (266)
T ss_pred -----HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 46778888888889999999999999999999999999999999988753
No 33
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-48 Score=403.11 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=227.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCcccCCCCchhhhhccCCC-
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~-~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (733)
|+|+.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence 8999999998 7899999999995 79999999999999999999876 499999999999999999999875422110
Q ss_pred ---c-ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccc
Q 004726 78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (733)
Q Consensus 78 ---~-~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 153 (733)
. ...+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 011112234555 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004726 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (733)
Q Consensus 154 ~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (733)
+|+.+|++|+++|++++|+||+++||||+|+|++++++++.+++++++..|+.+++
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------ 214 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------ 214 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999988764332
Q ss_pred HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 234 ~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.....++.++++.|...+..++.|+|+++++.+|++||++++
T Consensus 215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998875
No 34
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-48 Score=400.22 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=220.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
|.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||+|.|++||+|+|++++....... ...+..
T Consensus 1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 78 (255)
T PRK06563 1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE 78 (255)
T ss_pred CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence 35677 7899999999995 79999999999999999999999999999999999999999999875421111 111111
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
...+.+...+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 12233323478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
||++++|+||+++||||+|+|++++.+++.++++++++.+|.+++
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 203 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ----------------------------------- 203 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999988765433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|..
T Consensus 204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998775
No 35
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=5e-48 Score=401.05 Aligned_cols=257 Identities=20% Similarity=0.268 Sum_probs=221.6
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~-~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+ |+++.++.++++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 55 899999984478999999999 4799999999999999999999999999999999999999999998754211110
Q ss_pred ccc--cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 79 ~~~--~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++|.
T Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 011 111233555 56899999999999999999999999999999999999999999999999988765 58899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++|++||++++|+||+++||||+|+|++++.+++.++++++++.+|.+++
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 211 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR--------------------------- 211 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875443
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++++++.. +...+..++.|+++++++++|++||+|.+.
T Consensus 212 ---------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~ 262 (265)
T PRK05674 212 ---------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ 262 (265)
T ss_pred ---------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence 45677777777778888765 456788899999999999999999988753
No 36
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-48 Score=399.62 Aligned_cols=254 Identities=31% Similarity=0.468 Sum_probs=224.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC-Ccc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 79 (733)
|+|+.+.++. +++|++||||||+.|++|++|+++|.++++.++.|+++|+|||+|.|++||+|+|++++...... ...
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 8899999998 78999999999988999999999999999999999999999999999999999999987542111 111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
........+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|..+|
T Consensus 80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 11122234555 56899999999999999999999999999999999999999999999996 456789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|+|++++.+.+.++++++++.+|.+++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------ 205 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|++.
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~ 255 (257)
T PRK06495 206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVFK 255 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCCC
Confidence 45677777777889999999999999999999999999999999998753
No 37
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-48 Score=402.08 Aligned_cols=255 Identities=27% Similarity=0.356 Sum_probs=225.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC-
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~-~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (733)
|| +.+.++. +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (266)
T PRK09245 1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG 78 (266)
T ss_pred CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 66 4588888 7899999999995 699995 99999999999999999999999999999999999999885421110
Q ss_pred -cc----cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhcc
Q 004726 78 -DV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (733)
Q Consensus 78 -~~----~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r 152 (733)
.. ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~ 157 (266)
T PRK09245 79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157 (266)
T ss_pred ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence 00 01111123455 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004726 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (733)
Q Consensus 153 ~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (733)
++|..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------- 214 (266)
T PRK09245 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR----------------------- 214 (266)
T ss_pred HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999998875443
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++++.+..|...+..++.|+|+++++++|++||+|.+
T Consensus 215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 4567777777788999999999999999999999999999999998875
No 38
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-48 Score=399.81 Aligned_cols=257 Identities=23% Similarity=0.313 Sum_probs=222.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.+.+++++++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||+|.|++||+|+|++++.........
T Consensus 1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence 778889999844689999999995 7999999999999999999999999999999999999999999987532111111
Q ss_pred c--ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 80 S--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 80 ~--~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
. ........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 0 1112233455 67999999999999999999999999999999999999999999999999999998855 559999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
++++|+++|++++|+||+++||||+|+|++++.+.+.++++++++.+|.+++
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~---------------------------- 210 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA---------------------------- 210 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.......+++++.|...+..++.|+|+++++++|++||++++.
T Consensus 211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~ 260 (262)
T PRK07468 211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWR 260 (262)
T ss_pred --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 45667766655667888999999999999999999999999999998753
No 39
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-48 Score=399.64 Aligned_cols=255 Identities=30% Similarity=0.492 Sum_probs=226.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+ +++.+++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ..
T Consensus 1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK07657 1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ 78 (260)
T ss_pred CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence 67 578888646899999999995 7999999999999999999999999999999999 49999999998754211 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
...+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 112222334556 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|+|++++++++.+++++++..++.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------- 208 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998765433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.|...+..++.|+++++++++|++||++++
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 209 -------QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4577788777788999999999999999999999999999999998775
No 40
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-47 Score=397.48 Aligned_cols=252 Identities=31% Similarity=0.432 Sum_probs=222.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 8999999998 7899999999996 6999999999999999999999999999999998 6999999999875421111
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
........+. .+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+
T Consensus 79 --~~~~~~~~~~--~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 --WPESGFGGLT--SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred --hhhHHHHHHH--HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0111122233 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|+|++++++++.+++++++..+|.+++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 205 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR----------------------------- 205 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.| ...+..++.|+|+++++.+|++||+|++
T Consensus 206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 456777777778899999999 5578899999999999999999988775
No 41
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-47 Score=398.03 Aligned_cols=251 Identities=32% Similarity=0.470 Sum_probs=224.3
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+++.++.++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|+|++++..... ...+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~ 83 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY 83 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence 467788756889999999995 699999999999999999999999999999999999999999998754211 1112
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 162 (261)
T PRK08138 84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM 162 (261)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence 22334555 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
+++|++++|+||+++||||+|+|++++.+++.++++++++.++.++
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~---------------------------------- 208 (261)
T PRK08138 163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLAL---------------------------------- 208 (261)
T ss_pred HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998776432
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|++++.....+++++++.|.+.+..++.|+++++++++|++||++++
T Consensus 209 --~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 209 --AQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 35677788777888999999999999999999999999999999998875
No 42
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.1e-48 Score=401.81 Aligned_cols=256 Identities=27% Similarity=0.372 Sum_probs=226.5
Q ss_pred CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~-~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|+|+.+.+++ ++ +|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence 8899999998 67 99999999994 799999999999999999999999999999999999999999998754221110
Q ss_pred c-----cccch----hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhh
Q 004726 79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR 149 (733)
Q Consensus 79 ~-----~~~~~----~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~ 149 (733)
. ..+.. ..++.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 0 00100 123445 5688999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHHHHHHHH
Q 004726 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK 228 (733)
Q Consensus 150 l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (733)
|++++|+.++++|+++|++++|+||+++||||+|+|++++++++.++++++++. +|.++
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~-------------------- 219 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASM-------------------- 219 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999975 65433
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|+.++.....+++++++.|...+..++.|+++++++++|++||+|.+
T Consensus 220 ----------------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 220 ----------------AVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred ----------------HHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 24577788777788999999999999999999999999999999998775
No 43
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.8e-47 Score=396.65 Aligned_cols=254 Identities=28% Similarity=0.466 Sum_probs=224.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
.+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---- 83 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---- 83 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence 3467777546889999999995 79999999999999999999999999999999999999999999875321111
Q ss_pred cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHH
Q 004726 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (733)
Q Consensus 82 ~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~ 161 (733)
......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 111123455 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (733)
|+++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL-------------------------------- 210 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999998875433
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhhhhhcCCCC
Q 004726 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 242 ~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|++++.....+++++++.|...+..++ .|+++++++++|++||+++|.|.
T Consensus 211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 264 (265)
T PLN02888 211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK 264 (265)
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence 45777877777889999999998888886 59999999999999999998763
No 44
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=398.26 Aligned_cols=253 Identities=25% Similarity=0.343 Sum_probs=222.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 45788888 7899999999995 699999999999999999999999999999999999999999998864321111110
Q ss_pred --c-chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 82 --~-~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
. ...... + ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus 83 ~~~~~~~~~~-~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 83 GSYDPSRIDA-L-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhHHHH-H-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 0 011112 3 2378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|||++++++++.++++++++.||.+++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~----------------------------- 211 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ----------------------------- 211 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998865433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++.++++.|.+.+..++.++++++++++|++||+|++
T Consensus 212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 4567787777788999999999999999999999999999999998875
No 45
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.3e-47 Score=397.68 Aligned_cols=253 Identities=24% Similarity=0.344 Sum_probs=222.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
||. .+.+++ +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~-~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-- 76 (261)
T PRK03580 1 MSE-SLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-- 76 (261)
T ss_pred CCc-eEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence 663 588888 78999999999988999999999999999999999999999999998 6999999999875422111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+.......+ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111122344 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.+|.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------ 205 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~----~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....+++++++.|.. .+..++.|+|+++++++|++||++.+
T Consensus 206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 45677777777888898888874 78889999999999999999998775
No 46
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.1e-47 Score=397.42 Aligned_cols=250 Identities=26% Similarity=0.379 Sum_probs=220.7
Q ss_pred EEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC-Ccc-cccc
Q 004726 7 TMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLMP 83 (733)
Q Consensus 7 ~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~-~~~~ 83 (733)
.+++ +++|++||||||+ .|++|.+|+.+|.++++.+++|+ +|+|||||.|++||+|+|++++...... ... ..+.
T Consensus 2 ~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T TIGR02280 2 LSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIE 79 (256)
T ss_pred eEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHH
Confidence 5677 7899999999994 79999999999999999999998 9999999999999999999987542111 100 1111
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHH
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ 163 (733)
.....++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus 80 ~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 80 TFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 1123344 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchH
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (733)
++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~---------------------------------- 204 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLA---------------------------------- 204 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998865432
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 244 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++.++++.|...+..++.|+|+++++++|++||+|++.
T Consensus 205 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 254 (256)
T TIGR02280 205 --LTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQFT 254 (256)
T ss_pred --HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCCC
Confidence 46777887777889999999999999999999999999999999988753
No 47
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=9.3e-48 Score=396.17 Aligned_cols=245 Identities=30% Similarity=0.475 Sum_probs=219.1
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCcccCCCCchhhhhccCCCcccccchhHHHH
Q 004726 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (733)
Q Consensus 12 ~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (733)
+++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+....+.+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence 5789999999995 799999999999999999999999999999998 589999999998754211 1111222233445
Q ss_pred HHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC
Q 004726 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (733)
Q Consensus 90 ~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i 169 (733)
+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|++||+++
T Consensus 81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 5 568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q 004726 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249 (733)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 249 (733)
+|+||+++||||+|+|++++++++.++|+++++.+|.+++ .+|+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~ 203 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK 203 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence 9999999999999999999999999999999998875433 4577
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 250 ~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
+++.....+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 787777788999999999999999999999999999999998875
No 48
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-47 Score=400.41 Aligned_cols=253 Identities=30% Similarity=0.422 Sum_probs=224.4
Q ss_pred cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc---cc
Q 004726 5 RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---VS 80 (733)
Q Consensus 5 ~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---~~ 80 (733)
.+.++. +++|++|||||| +.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........ ..
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 678888 789999999999 5799999999999999999999999999999999999999999998743211111 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCC-ChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P-~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..+|
T Consensus 97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a 175 (277)
T PRK08258 97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA 175 (277)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence 1222233555 678999999999999999999999999999999999999999999999995 78899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.|+.+++
T Consensus 176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 225 (277)
T PRK08258 176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------ 225 (277)
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....+++++++.|...+..++.|+|+++++++|++||++++.
T Consensus 226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 275 (277)
T PRK08258 226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFE 275 (277)
T ss_pred ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 45677877778889999999999999999999999999999999998763
No 49
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-47 Score=396.62 Aligned_cols=255 Identities=24% Similarity=0.307 Sum_probs=226.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (733)
|| ..+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (260)
T PRK07511 1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS 78 (260)
T ss_pred CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 77 3477888 7899999999995 79999999999999999999999999999999999999999999875421111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 1112223344566 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
++++|+++|++++|+||+++||||+|+|++++.+++.++++++++.+|.++
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~----------------------------- 208 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNAL----------------------------- 208 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998876432
Q ss_pred CCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..+|+.++.+...++.++++.|.+.+..++.|+++++++++|+++|++++
T Consensus 209 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 209 -------ARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred -------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 24577788777888999999999999999999999999999999998775
No 50
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-47 Score=394.28 Aligned_cols=250 Identities=28% Similarity=0.410 Sum_probs=220.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++..... .
T Consensus 1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~-- 75 (254)
T PRK08252 1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGER-P-- 75 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccc-h--
Confidence 55 4688888 7899999999995 699999999999999999999999999999999999999999998764211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.........++ ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 76 ~~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 76 SIPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred hhhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 01111111222 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 202 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------ 202 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998865433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus 203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567777777778999999999999999999999999999999988775
No 51
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=2e-47 Score=398.36 Aligned_cols=251 Identities=23% Similarity=0.320 Sum_probs=219.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC-c--
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D-- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~-- 78 (733)
|+++.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++....... .
T Consensus 7 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 85 (275)
T PRK09120 7 WDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL 85 (275)
T ss_pred cccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence 35688998 7899999999995 79999999999999999999999999999999999999999999874321111 0
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
..........++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 86 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 86 QERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 111111233455 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|||++++++++.+++++|++.+|.+++
T Consensus 165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~----------------------------- 215 (275)
T PRK09120 165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR----------------------------- 215 (275)
T ss_pred HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHhhhh
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA 291 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~i~aF~~kr~ 291 (733)
.+|+.++.....++++.++.|.. .+..++.++ |+++++++|++||.
T Consensus 216 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 216 -------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred -------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 45777887778888888888764 355678998 89999999999988
No 52
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.6e-47 Score=399.80 Aligned_cols=257 Identities=24% Similarity=0.390 Sum_probs=222.3
Q ss_pred CCCcEEEEE--ecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC-
Q 004726 2 AAPRVTMEV--GNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (733)
Q Consensus 2 ~~~~v~~~~--~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (733)
||..+++-. .+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 3 ~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~ 82 (275)
T PLN02664 3 SYKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82 (275)
T ss_pred CccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccc
Confidence 455554221 26889999999995 79999999999999999999999999999999999999999999875421100
Q ss_pred --c-------ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh
Q 004726 78 --D-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 78 --~-------~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
. ...+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 161 (275)
T PLN02664 83 SGDRGRSGERLRRKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQ 161 (275)
T ss_pred cccchhhHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHH
Confidence 0 001111223455 568999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHH
Q 004726 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (733)
Q Consensus 149 ~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (733)
+|++++|..+|++|++||++++|+||+++||||+|||+ +++.+.+.++++++++.+|.+++
T Consensus 162 ~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~------------------ 223 (275)
T PLN02664 162 RLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT------------------ 223 (275)
T ss_pred HHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999985 88999999999999998875433
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....++.++++.|...+..++.|+|++|++++|++||+|.+.
T Consensus 224 ------------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~ 273 (275)
T PLN02664 224 ------------------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVFA 273 (275)
T ss_pred ------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence 45677777777889999999999999999999999999999999988753
No 53
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-47 Score=397.74 Aligned_cols=255 Identities=25% Similarity=0.408 Sum_probs=225.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCc-c
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD-V 79 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~-~ 79 (733)
.+.|.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.| ++||+|+|++++........ .
T Consensus 10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 35688888 7899999999995 7999999999999999999999999999999998 79999999998754211111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 11222233455 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|||++++++++.++|++++..+|.+++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 217 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------ 217 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999988765432
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|+.++.....++++.++.|...+..++.|+|+++++.+|++||+|.+.
T Consensus 218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~ 267 (269)
T PRK06127 218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFK 267 (269)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence 45677777777889999999999999999999999999999999988753
No 54
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-47 Score=392.70 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=215.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchh
Q 004726 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
+..+..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus 3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 44444378999999999988999999999999999999999999999999999999999999987542111111111122
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHc
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~lt 165 (733)
..+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++.+|++++|..++++|+++
T Consensus 83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt 158 (249)
T PRK07938 83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT 158 (249)
T ss_pred HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence 33555 56899999999999999999999999999999999999999999999986 456789999999999999999
Q ss_pred CCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHH
Q 004726 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (733)
|++++|+||+++||||+|||++++++++.++++++++.++.+++
T Consensus 159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------ 202 (249)
T PRK07938 159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------ 202 (249)
T ss_pred CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999998875433
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhh
Q 004726 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (733)
Q Consensus 246 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~ 292 (733)
.+|+.++.....+++++++.|...+..++.++|++|++++|++||+|
T Consensus 203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 45677777777888999999999999999999999999999999875
No 55
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.6e-47 Score=394.65 Aligned_cols=255 Identities=25% Similarity=0.350 Sum_probs=215.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|..+.++.++++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 1 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (259)
T TIGR01929 1 FTDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG 80 (259)
T ss_pred CceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence 3457777635789999999995 6999999999999999999999999999999999 7999999999874321111000
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|+
T Consensus 81 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~ 159 (259)
T TIGR01929 81 VHRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAR 159 (259)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHH
Confidence 0001123445 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|||++++.+++.++|+++++.|+.+++
T Consensus 160 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 208 (259)
T TIGR01929 160 EIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR------------------------------- 208 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998876543
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++..... ....++.|...+..++.|+|+++++++|++||+|++.
T Consensus 209 -----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 257 (259)
T TIGR01929 209 -----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDFS 257 (259)
T ss_pred -----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Confidence 345555544332 3455666778899999999999999999999998753
No 56
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-47 Score=394.16 Aligned_cols=251 Identities=31% Similarity=0.446 Sum_probs=225.8
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.+.+++ +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++....... ..+
T Consensus 5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--~~~ 81 (259)
T PRK06688 5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP--PDE 81 (259)
T ss_pred CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch--HHH
Confidence 4688888 789999999999 689999999999999999999999999999999999999999999886532211 122
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
....++++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 82 ~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l 160 (259)
T PRK06688 82 LAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM 160 (259)
T ss_pred HHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence 33345666 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
+++|++++|+||+++||||+|+|++++.+.+.++|++++..++.+++
T Consensus 161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~--------------------------------- 207 (259)
T PRK06688 161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR--------------------------------- 207 (259)
T ss_pred HHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999988764322
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++++++..|.+.+..++.|+++++++++|++||+|++
T Consensus 208 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 208 ---YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred ---HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 4567777777788999999999999999999999999999999988765
No 57
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=5.6e-47 Score=391.53 Aligned_cols=252 Identities=27% Similarity=0.315 Sum_probs=213.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+++.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~ 77 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG 77 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence 56788998 7899999999995 7999999999999999999999999999999998 69999999998743211 1 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 1112234455 679999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~------------------------------- 205 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA------------------------------- 205 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875443
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++......... ...|...+..++.|+|+++++.+|++||+|.+.
T Consensus 206 -----~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 254 (256)
T TIGR03210 206 -----IAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEFR 254 (256)
T ss_pred -----HHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence 3455555443322111 113456788899999999999999999988754
No 58
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-47 Score=393.94 Aligned_cols=251 Identities=23% Similarity=0.285 Sum_probs=222.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (733)
+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.+ .|+++|+|||+|.|++||+|+|++++...........+
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 3588888 7899999999995 7999999999999999999 58899999999999999999999987542211111222
Q ss_pred chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHH
Q 004726 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (733)
Q Consensus 83 ~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l 162 (733)
....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 23344555 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCch
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (733)
+++|++++|+||+++||||+|| ++++.+++.++++++++.|+.+++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~--------------------------------- 208 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMI--------------------------------- 208 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 9999999999999999999999 789999999999999988764432
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 243 a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+|++
T Consensus 209 ---~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 209 ---ETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998875
No 59
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=4.6e-47 Score=392.98 Aligned_cols=253 Identities=21% Similarity=0.296 Sum_probs=221.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCcccCCCCchhhhhccCCC
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (733)
|||+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+ +|+|||||. |++||+|+|++++......
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence 9999999999 8899999999995 79999999999999999999887 999999986 3799999999987532111
Q ss_pred cccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
...+.....+++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+.
T Consensus 78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 112223334556 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (733)
++++|+++|++++|+||+++||||+|||++++++.+.++++++++.+|.+++
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------- 207 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875433
Q ss_pred CCCchHHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 238 ~~~~~a~~~~~~~i~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++.... .+. ...++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus 208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 34566654432 233 57788899999999999999999999999998875
No 60
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-47 Score=390.95 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=223.6
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++++.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++...........
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence 45788888 7899999999995 799999999999999999999999999999999999999999998864221111111
Q ss_pred ---cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 82 ---~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 122234555 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
+++|+++|++++|+||+++||||+++|++++.+.+.++++++++.++.+++
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA----------------------------- 209 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998765433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|+.++.....++++.+..|...+..++.|+++++++++|++||+
T Consensus 210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 4577777777788999999999999999999999999999999885
No 61
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=6.8e-47 Score=394.32 Aligned_cols=257 Identities=19% Similarity=0.254 Sum_probs=224.5
Q ss_pred CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CcccCCCCchhhhhccCCCc-cc
Q 004726 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-VS 80 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g--~~F~aG~Dl~~~~~~~~~~~-~~ 80 (733)
+.+.++.++++|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||.| ++||+|.|++++........ ..
T Consensus 11 ~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~ 90 (278)
T PLN03214 11 PGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA 90 (278)
T ss_pred CceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence 4688887458899999999988999999999999999999999999999999987 68999999998753211110 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCC-CCChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl-~P~~g~~~~l~r~~G~~~a 159 (733)
.+......++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++++|+.+|
T Consensus 91 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a 169 (278)
T PLN03214 91 EFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVA 169 (278)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHH
Confidence 1111123345 5689999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|||.+++++.+.+++++++..++.+++
T Consensus 170 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 219 (278)
T PLN03214 170 ESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA------------------------------ 219 (278)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998765433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++|.+.+|.+.
T Consensus 220 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~~ 271 (278)
T PLN03214 220 ------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEKK 271 (278)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4567777777778899999999999999999999999999999999887654
No 62
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.2e-46 Score=392.36 Aligned_cols=254 Identities=26% Similarity=0.362 Sum_probs=217.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~ 89 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD 89 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence 56788888 7899999999995 7999999999999999999999999999999999 5999999999874311111 00
Q ss_pred ccch-hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~-~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a 168 (273)
T PRK07396 90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA 168 (273)
T ss_pred hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence 0111 122344 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|.+++
T Consensus 169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T PRK07396 169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------ 218 (273)
T ss_pred HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|+.++.... ..+...+.|...+..++.|+|+++++.+|++||+|.+..
T Consensus 219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 268 (273)
T PRK07396 219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFSK 268 (273)
T ss_pred ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCCC
Confidence 34555555433 345555678888899999999999999999999987644
No 63
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-46 Score=397.68 Aligned_cols=258 Identities=25% Similarity=0.346 Sum_probs=220.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC-C--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-- 76 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~-- 76 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence 7888899998 7899999999995 799999999999999999999999999999999999999999998753100 0
Q ss_pred ---------Cccc----ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCC
Q 004726 77 ---------GDVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (733)
Q Consensus 77 ---------~~~~----~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~ 143 (733)
.... .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~ 158 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE 158 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence 0000 1111123455 5689999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHcc-CchhhhhhhccCCCCCcHH
Q 004726 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE 222 (733)
Q Consensus 144 ~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~ 222 (733)
+|++++|++++|..+|++|+++|++++|+||+++||||+|||++++++++.+++++++.. ++.+++
T Consensus 159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~------------- 225 (296)
T PRK08260 159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA------------- 225 (296)
T ss_pred cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHH-------------
Confidence 999999999999999999999999999999999999999999999999999999999985 554332
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCC
Q 004726 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIV--HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (733)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~--~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~~ 297 (733)
.+|++++.... .... ....|...+..++.|+++++++.+|++||+|.+.+.
T Consensus 226 -----------------------~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 226 -----------------------LTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred -----------------------HHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 44566665532 2233 345688889999999999999999999999887554
No 64
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-46 Score=390.61 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=215.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
.+.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 85 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV 85 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence 45788898 7899999999995 6999999999999999999999999999999998 6999999999875432111111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcccc-CCCCCChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~-~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 1222234555 5689999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++++++|++++|+||+++||||+|+|++++.+++.++|+++++.|+.+++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------ 214 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------ 214 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++..... .++.+.+.+..++.|+++++++.+|++||+|.+
T Consensus 215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 345555554333 334456778889999999999999999998875
No 65
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-46 Score=391.29 Aligned_cols=251 Identities=25% Similarity=0.292 Sum_probs=211.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc-cc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (733)
|+.+.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++........ ..
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 89 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA 89 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence 6778888745789999999996 799999999999999999999999999999999999999999998754211110 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (268)
T PRK07327 90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK 168 (268)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence 1122233455 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|++||++++|+||+++||||+|+|++++++++.++|+++++.++.+++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 217 (268)
T PRK07327 169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR------------------------------- 217 (268)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998875443
Q ss_pred chHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 241 MPQHQACLDVIEEGI---VHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~---~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|++++... ..+++..+..|. .++.|+++++++.+|++||+|.+
T Consensus 218 -----~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 218 -----WTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -----HHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence 2344444321 123444444443 47789999999999999998875
No 66
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-46 Score=386.51 Aligned_cols=248 Identities=28% Similarity=0.338 Sum_probs=216.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++..... ...
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~ 77 (254)
T PRK08259 1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL 77 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence 66 4588888 7899999999995 699999999999999999999999999999999999999999998754211 111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.. ......+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|.+|++++|++++|..+|
T Consensus 78 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 78 HP--SGDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hh--hhcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 10 0011112 12347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|+++|++++|+||+++||||+|||++++++++.++|+++++.++.+++
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------ 204 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~ 291 (733)
.+|++++.....+++++++.|...+..++. +|++|++.+|++|++
T Consensus 205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 456777777778899999999998888887 999999999998766
No 67
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-46 Score=385.94 Aligned_cols=247 Identities=24% Similarity=0.403 Sum_probs=216.7
Q ss_pred CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC
Q 004726 1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (733)
Q Consensus 1 m~~~~v~~~~~~~---~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~ 76 (733)
|+ +.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||+|.|++||+|+|++++......
T Consensus 1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~ 78 (251)
T PRK06023 1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG 78 (251)
T ss_pred CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence 66 4688888 44 59999999995 7999999999999999999999999999999999999999999987542111
Q ss_pred CcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH
Q 004726 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (733)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~ 156 (733)
. ..+.....+++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 1 11222334556 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004726 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (733)
Q Consensus 157 ~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (733)
.+|++++++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------- 208 (251)
T PRK06023 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ--------------------------- 208 (251)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999998875433
Q ss_pred hCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 004726 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (733)
Q Consensus 237 ~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~k 289 (733)
.+|++++... .++.+.++.|.+.+..++.|+++++++++|++|
T Consensus 209 ---------~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 209 ---------IARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred ---------HHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 3456665543 467888899999999999999999999999974
No 68
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-46 Score=391.53 Aligned_cols=256 Identities=25% Similarity=0.340 Sum_probs=216.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc---
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--- 78 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--- 78 (733)
++.+.++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++........
T Consensus 8 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 87 (276)
T PRK05864 8 MSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTR 87 (276)
T ss_pred CCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccc
Confidence 3467777546789999999995 799999999999999999999999999999999999999999998743211100
Q ss_pred cc---ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCC-Chhhhhhhcccc
Q 004726 79 VS---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLV 154 (733)
Q Consensus 79 ~~---~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P-~~g~~~~l~r~~ 154 (733)
.. ......++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++
T Consensus 88 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 88 PTYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred hhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence 00 1112233455 568899999999999999999999999999999999999999999999997 789999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 155 G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
|..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|+..||.+++
T Consensus 167 G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------- 221 (276)
T PRK05864 167 GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE------------------------- 221 (276)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999998875433
Q ss_pred HHhCCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++..... ++++++..|..... .++.|+|+++++.+|++||+|.+.
T Consensus 222 -----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 273 (276)
T PRK05864 222 -----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFT 273 (276)
T ss_pred -----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence 456666665554 67888877765432 357899999999999999988753
No 69
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-46 Score=386.29 Aligned_cols=247 Identities=27% Similarity=0.311 Sum_probs=218.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++....... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~ 77 (249)
T PRK05870 1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A 77 (249)
T ss_pred CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence 55 4578888 7899999999995 79999999999999999999999999999999999999999999886532211 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
........+.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 11122233445 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+ +++++++.++|+++++.+|.+++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------ 204 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 9999999999999999999999999 68999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 004726 240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~k 289 (733)
.+|+.++.... .+++++++.|...+..++.|+|+++++++|+++
T Consensus 205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 45777877777 789999999999999999999999999999974
No 70
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-46 Score=383.19 Aligned_cols=250 Identities=28% Similarity=0.406 Sum_probs=223.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-~ 78 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-G 78 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh-h
Confidence 8999999999 8899999999995 79999999999999999999999999999999999999999999885421111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
. ....++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 79 -~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 79 -A-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred -H-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 1 12234556 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+++|++++++++.++++++++.+|.+++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------ 205 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhhhh
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRA 291 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~i~aF~~kr~ 291 (733)
.+|++++.....+++++++.|...+..++.| +..++...+|.++-+
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK06190 206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR 254 (258)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence 4577888878888999999999999999999 777777777777544
No 71
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=5.6e-46 Score=382.31 Aligned_cols=245 Identities=26% Similarity=0.362 Sum_probs=210.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchh
Q 004726 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
|.+++ +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|.|++++... ....+...
T Consensus 3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~----~~~~~~~~ 77 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD----QCAAMLAS 77 (251)
T ss_pred EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch----hHHHHHHH
Confidence 67788 78999999999988999999999999999999999999999999999999999999975321 11111222
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHc
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~lt 165 (733)
..+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..+|++|++|
T Consensus 78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 33455 5789999999999999999999999999999999999999999999999997 457899999999999999999
Q ss_pred CCCCCHHHHHHcCCccEEcCcchHHHHHHHH-HHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
|++++|+||+++||||+|+|+.+ +++.++ ++++++.||.+++
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~----------------------------------- 198 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR----------------------------------- 198 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 99999999999999999997543 466666 6889988875433
Q ss_pred HHHHHHHHHhhcCCHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 245 QACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l-~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....++++++ ..|...+..++.|+|+++++++|++||+|.+.
T Consensus 199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 249 (251)
T TIGR03189 199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWE 249 (251)
T ss_pred -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCC
Confidence 456677777677777776 47888899999999999999999999998753
No 72
>PLN02921 naphthoate synthase
Probab=100.00 E-value=9.1e-46 Score=391.76 Aligned_cols=254 Identities=27% Similarity=0.309 Sum_probs=215.1
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCcc
Q 004726 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+.|.++.+ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....... .
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~ 142 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P 142 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence 556788874 5889999999995 6999999999999999999999999999999999 7999999999874321110 0
Q ss_pred cccch-hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 80 ~~~~~-~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~ 221 (327)
T PLN02921 143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK 221 (327)
T ss_pred hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 01111 112344 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
|++|+++|++++|+||+++||||+|+|++++++++.++|++|++.++.+++
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~----------------------------- 272 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR----------------------------- 272 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875443
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++..... .....+.|...+..++.|+|++|++.+|++||+|.+.
T Consensus 273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 345566554432 3333444557888899999999999999999998864
No 73
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-46 Score=389.93 Aligned_cols=254 Identities=22% Similarity=0.207 Sum_probs=215.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchh-hhhc----c
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQKV----H 74 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~-~~~~----~ 74 (733)
|+|+.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|+++ +... .
T Consensus 2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence 7888899998 8899999999995 799999999999999999999999999999999999999999986 3210 0
Q ss_pred CCC---ccccc---c-h--hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccC-CCCCCh
Q 004726 75 GAG---DVSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF 144 (733)
Q Consensus 75 ~~~---~~~~~---~-~--~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~-Gl~P~~ 144 (733)
... ....+ . . .....+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~- 158 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT- 158 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch-
Confidence 000 00111 0 0 012244 45889999999999999999999999999999999999999999997 98863
Q ss_pred hhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHH
Q 004726 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (733)
Q Consensus 145 g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 224 (733)
+++ .+++|..+|++|++||++++|+||+++||||+|||++++++++.++|++++..||.+++
T Consensus 159 -~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------- 220 (298)
T PRK12478 159 -GMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ--------------- 220 (298)
T ss_pred -hHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 333 35699999999999999999999999999999999999999999999999998875443
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHhhhhhcCC
Q 004726 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV 295 (733)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~i~aF~~kr~~~~~ 295 (733)
..|++++.... .+++++++.|...+..++.|+|++ |++.+|++||+|.+.
T Consensus 221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 45677777665 468999999999999999999997 599999999999865
Q ss_pred C
Q 004726 296 P 296 (733)
Q Consensus 296 ~ 296 (733)
.
T Consensus 280 ~ 280 (298)
T PRK12478 280 D 280 (298)
T ss_pred c
Confidence 3
No 74
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.2e-46 Score=384.79 Aligned_cols=251 Identities=27% Similarity=0.430 Sum_probs=220.0
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccc
Q 004726 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
++.+.+++ +++|++|||||| +.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++....... ...
T Consensus 2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~ 79 (262)
T PRK07509 2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKL 79 (262)
T ss_pred CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhh
Confidence 36788998 889999999999 579999999999999999999999999999999999999999999876421111 111
Q ss_pred cc-------hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhcccc
Q 004726 82 MP-------DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (733)
Q Consensus 82 ~~-------~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~ 154 (733)
.. ....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 158 (262)
T PRK07509 80 LFKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV 158 (262)
T ss_pred HhhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence 11 1122334 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004726 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (733)
Q Consensus 155 G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (733)
|..++++|+++|++++|+||+++||||+|++ ++.+++.++++++++.+|.+++
T Consensus 159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~------------------------- 211 (262)
T PRK07509 159 RKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIA------------------------- 211 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999995 3688999999999998765433
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 235 ~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.....++++++..|.+.+..++.|+|+++++.+|++||+|.+
T Consensus 212 -----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 212 -----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777788899999999999999999999999999999998764
No 75
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=8.1e-46 Score=383.85 Aligned_cols=253 Identities=36% Similarity=0.575 Sum_probs=219.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|.+..+.++. .++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 2 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~ 80 (257)
T COG1024 2 TTYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAA 80 (257)
T ss_pred CCCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHH
Confidence 3456788888 6779999999995 6999999999999999999999999999999999999999999998751111111
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.......+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 81 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 81 ENLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 12223333466 67999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
++|++||+.++|+||+++||||+++++ +++++.+.++++++++ +|.++
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~------------------------------ 208 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLAL------------------------------ 208 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHH------------------------------
Confidence 999999999999999999999999985 7999999999999987 43322
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhc
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~ 293 (733)
..+|..++.+...++++.+..|...+...+.++|++|++++|++ |+|.
T Consensus 209 ------~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 209 ------AATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred ------HHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 24566777776666888999999999989999999999999999 6654
No 76
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-45 Score=378.05 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=215.1
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
|.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|.|++++.... ...+..
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~ 76 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE 76 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence 46777 7899999999995 79999999999999999999999999999999999999999999875321 111222
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
....++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|. +++++++
T Consensus 77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll 154 (248)
T PRK06072 77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV 154 (248)
T ss_pred HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence 334555 56899999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
+|++++|+||+++||||++ +++++++.++|+++++.|+.+++
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~----------------------------------- 196 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI----------------------------------- 196 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 9999999999999999963 46789999999999988765432
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||+|.+.
T Consensus 197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 246 (248)
T PRK06072 197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFK 246 (248)
T ss_pred -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCC
Confidence 45677777777789999999999999999999999999999999988753
No 77
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-45 Score=374.92 Aligned_cols=238 Identities=25% Similarity=0.383 Sum_probs=208.7
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccch
Q 004726 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (733)
+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.+ ++|+|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~ 73 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD 73 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence 56777 7899999999995 7999999999999999999865 8999999999999999999985311 111222
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
...+++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l 152 (243)
T PRK07854 74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152 (243)
T ss_pred HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence 334555 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (733)
||++++|+||+++||||+|++ + +++.++++++++.++.+++
T Consensus 153 tg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~----------------------------------- 193 (243)
T PRK07854 153 GAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLAPLALQ----------------------------------- 193 (243)
T ss_pred cCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999975 2 2789999999998865433
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 245 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++.. .+++++++.|...+..++.|+|+++++++|++||+|.+
T Consensus 194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 456666654 56889999999999999999999999999999998875
No 78
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.5e-45 Score=376.42 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=213.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||+|.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence 7899999999 8899999999995 79999999999999999998 369999999999999999999987542221111
Q ss_pred c-ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 80 ~-~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
. .......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 1 1112233555 678999999999999999999999999999999999999999999999999865 567999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (733)
+++|+++|++++|+||+++||||+|+|+++. .+.++++++++.+|.+++
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~----------------------------- 204 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA----------------------------- 204 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence 9999999999999999999999999987653 578899999988875433
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 239 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
.+|++++.. ...+.++++.|.+.+..++.|+|+++++.+|++||+|.+.
T Consensus 205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 253 (255)
T PRK07112 205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPWE 253 (255)
T ss_pred -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCC
Confidence 345555543 4457888999999999999999999999999999987653
No 79
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=7.6e-45 Score=374.06 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=220.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (733)
|.|+.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence 6788888998 8899999999995 79999999999999999999999999999999999999999999875432211
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+. . .+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~~~-~-~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTFT-E-ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhHh-h-HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1111 1 3555 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||+|+|++++++++.++++++++.|+.+++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------ 205 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875433
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~ 287 (733)
.+|+.++.....+++++++.|...+..++.|+|++|++....
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 567788888888999999999999999999999999998753
No 80
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.3e-45 Score=380.27 Aligned_cols=244 Identities=35% Similarity=0.557 Sum_probs=222.0
Q ss_pred EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchh
Q 004726 7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 7 ~~~~~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
.++. +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+||++|.+++||+|.|++++... .......+...
T Consensus 1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRR 78 (245)
T ss_dssp EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHH
T ss_pred CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchh
Confidence 3677 789999999999 78999999999999999999999999999999999999999999998775 22223344455
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHc
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~lt 165 (733)
...++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus 79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 66777 67999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHH
Q 004726 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (733)
|++++|+||+++||||+|+|++++.+.+.+++++++..++.+++
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------ 201 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------ 201 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999998865433
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 004726 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (733)
Q Consensus 246 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~k 289 (733)
.+|+.++......+.+.++.|.+.+..++.++|++|++++|+||
T Consensus 202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 45677888778889999999999999999999999999999987
No 81
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.9e-44 Score=383.78 Aligned_cols=276 Identities=31% Similarity=0.527 Sum_probs=246.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
+++||+|||+|.||++||..|+++|++|++||++++.++++.+.+.+........+. ....++++..++++ +.+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 468999999999999999999999999999999999988877655443332222111 01233556666776 458
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~ 465 (733)
++||+||+|||++.++++.+++++...++++++|+|+||+++++++++.+..+.+++++||++|++.++++|+++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEc-CCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004726 466 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG 539 (733)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~-d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p---~Gpf~~~D~~G 539 (733)
+++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++| ++|++||.++ .++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999995 8899999999999999999999997 5999999999 799998 69999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCC
Q 004726 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 587 (733)
Q Consensus 540 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 587 (733)
+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence 999999999999999887779999999999999999999999999754
No 82
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-45 Score=377.89 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=217.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhcc-CCCc-cc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS 80 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~ 80 (733)
+.+.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.... .... ..
T Consensus 6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 4577887 7899999999995 79999999999999999999999999999999999999999999875421 1110 11
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
.+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++ ..+++
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~ 162 (260)
T PRK07827 85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA 162 (260)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence 1222334555 678999999999999999999999999999999999999999999999999999999999875 56899
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (733)
+|+++|++++|+||+++||||++++ ++.+++.++++++++.++.+++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~------------------------------- 209 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLA------------------------------- 209 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999974 5899999999999988765432
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 241 ~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
.+|+.++......+++.++.|...+..++.|+++++++++|++||+|++
T Consensus 210 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~ 258 (260)
T PRK07827 210 -----ESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW 258 (260)
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 5677788877788899999999999999999999999999999988764
No 83
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=4.7e-45 Score=390.52 Aligned_cols=288 Identities=23% Similarity=0.342 Sum_probs=221.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCCccc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
.+.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 2 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (342)
T PRK05617 2 EDEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPL 80 (342)
T ss_pred CceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCch
Confidence 35688888 7899999999995 7999999999999999999999999999999999 8999999999875421111000
Q ss_pred ---ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 81 ---~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
.+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .
T Consensus 81 ~~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~ 158 (342)
T PRK05617 81 AADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-A 158 (342)
T ss_pred hHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-H
Confidence 1112223455 5689999999999999999999999999999999999999999999999999999999999977 7
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHH------------HHHccC---c--------hhhhhhhcc
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARR---K--------PWIRSLHRT 214 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------~~a~~~---~--------~~~~~~~~~ 214 (733)
+|++|++||++++|+||+++||||+|+|++++.+...++++ .+...+ | ..+......
T Consensus 159 ~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 238 (342)
T PRK05617 159 LGTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG 238 (342)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC
Confidence 89999999999999999999999999999988776433321 011100 0 001111100
Q ss_pred CCCCCcHHHHHHHH-----HHHHH-HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-
Q 004726 215 DKLGSLSEAREVLK-----LARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF- 287 (733)
Q Consensus 215 ~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~- 287 (733)
..+......++ .+... .+.....-.+...+|++++.+...+++++++.|...+..++.|+|+++++++|+
T Consensus 239 ---~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ 315 (342)
T PRK05617 239 ---DTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLI 315 (342)
T ss_pred ---CCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEE
Confidence 01111111111 01111 223334445777889999998888999999999999999999999999999997
Q ss_pred hh-hhhcCCC
Q 004726 288 AQ-RATSKVP 296 (733)
Q Consensus 288 ~k-r~~~~~~ 296 (733)
+| |+|++..
T Consensus 316 ek~r~p~~~~ 325 (342)
T PRK05617 316 DKDRNPKWSP 325 (342)
T ss_pred cCCCCCCCCC
Confidence 76 7777644
No 84
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=2.4e-44 Score=379.67 Aligned_cols=255 Identities=24% Similarity=0.299 Sum_probs=213.1
Q ss_pred CcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CcccCCCCchhhhhcc
Q 004726 4 PRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH 74 (733)
Q Consensus 4 ~~v~~~~~-~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-------~~F~aG~Dl~~~~~~~ 74 (733)
.+++++++ +++|++||||||+ .|++|++|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 23 ~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~ 102 (302)
T PRK08321 23 TDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDG 102 (302)
T ss_pred eeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccc
Confidence 35777763 5789999999995 6999999999999999999999999999999998 5999999999763210
Q ss_pred ----CCC--cc-c--ccchh-HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeCccccCCCCCC
Q 004726 75 ----GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPG 143 (733)
Q Consensus 75 ----~~~--~~-~--~~~~~-~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~P~ 143 (733)
... .. . ..... ..+++ +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 103 YQYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred ccccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 000 00 0 01011 11233 56889999999999999999999999999999999 69999999999999999
Q ss_pred hhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHH
Q 004726 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 223 (733)
Q Consensus 144 ~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 223 (733)
++++++|+|++|..+|++|++||++++|+||+++||||++||++++++++.+++++|++.++.+++
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------- 247 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR-------------- 247 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999998875443
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Q 004726 224 REVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (733)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~~ 296 (733)
.+|++++..... ..+....|.+.+..++.++|+++++.+|++||+|.+..
T Consensus 248 ----------------------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~ 297 (302)
T PRK08321 248 ----------------------MLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSD 297 (302)
T ss_pred ----------------------HHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 345666554433 33445568889999999999999999999999887543
No 85
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.3e-44 Score=387.41 Aligned_cols=290 Identities=22% Similarity=0.254 Sum_probs=217.6
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc-cc
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (733)
++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|++||+|||+|.|++||+|+|++++........ ..
T Consensus 10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 88 (379)
T PLN02874 10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL 88 (379)
T ss_pred CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence 35688888 7899999999995 699999999999999999999999999999999999999999998754211111 01
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~ 160 (733)
........++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. .++
T Consensus 89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~ 166 (379)
T PLN02874 89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE 166 (379)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence 1111112334 56889999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccC----------------------CCC
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTD----------------------KLG 218 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~----------------------~~~ 218 (733)
+|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+....+.- ...
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 245 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD 245 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988876322221 00000000000000000 000
Q ss_pred CcHHHHHHHHH---------HHHHHH-HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 004726 219 SLSEAREVLKL---------ARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV 285 (733)
Q Consensus 219 ~~~~~~~~~~~---------~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~i~a 285 (733)
........+.. +....+ .....-.+...+|++++.+...+++++++.|......++. ++|++|++++
T Consensus 246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A 325 (379)
T PLN02874 246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA 325 (379)
T ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence 11111111110 112222 2223334667889999999888999999999888887877 9999999999
Q ss_pred HH-hh-hhhcCCC
Q 004726 286 FF-AQ-RATSKVP 296 (733)
Q Consensus 286 F~-~k-r~~~~~~ 296 (733)
|+ +| |+|++.+
T Consensus 326 flidK~r~P~w~~ 338 (379)
T PLN02874 326 LVIDKDNAPKWNP 338 (379)
T ss_pred EEEcCCCCCCCCC
Confidence 97 77 8888755
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.1e-43 Score=397.27 Aligned_cols=255 Identities=15% Similarity=0.153 Sum_probs=221.5
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCC-cccCCC
Q 004726 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF 65 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~~-d~~v~~vvl~g~g~-~F~aG~ 65 (733)
|++|.++.+ +++|++||||||+ . |+||.+|+++|.++++.++. |+++|+|||||.|+ .||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 555666553 5789999999994 5 79999999999999999986 79999999999994 999999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeC-Ccccchh-hHHhhhcCEEEEe-------CCceEeCccc
Q 004726 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL 136 (733)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~-G~a~GgG-~~lalacD~ria~-------~~a~f~~pe~ 136 (733)
|++.+.. .............+.++ .+|.++||||||+|| |+|+||| ++|+++||+|||+ ++++|++||+
T Consensus 339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence 9874321 11100111122334455 679999999999997 9999999 9999999999999 9999999999
Q ss_pred cCCCCCChhhhhhhccc-cCHHHHHHH--HHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhc
Q 004726 137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (733)
Q Consensus 137 ~~Gl~P~~g~~~~l~r~-~G~~~a~~l--~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~ 213 (733)
++|++|++|++++|+|+ +|..+|+++ ++||++++|+||+++||||+|+|++++++++.++|+++++.||.+++
T Consensus 417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~---- 492 (550)
T PRK08184 417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT---- 492 (550)
T ss_pred cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence 99999999999999998 699999997 58999999999999999999999999999999999999999876543
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhh
Q 004726 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (733)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~k 289 (733)
.+|++++.+...+++++ +..|.+.+..+++|+|++| ++++|++|
T Consensus 493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 540 (550)
T PRK08184 493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG 540 (550)
T ss_pred --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence 56788889889999999 9999999999999999999 99999999
Q ss_pred hhhcCC
Q 004726 290 RATSKV 295 (733)
Q Consensus 290 r~~~~~ 295 (733)
|+|+..
T Consensus 541 r~~~f~ 546 (550)
T PRK08184 541 QKAQFD 546 (550)
T ss_pred CCCCCC
Confidence 998753
No 87
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.4e-43 Score=394.71 Aligned_cols=254 Identities=16% Similarity=0.134 Sum_probs=220.5
Q ss_pred CCcEEEEEe-cCcEEEEEeCCC-CC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCc-ccCCC
Q 004726 3 APRVTMEVG-NDGVAIITLINP-PV-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF 65 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p-~~-------------Nal~~~~~~~l~~~l~~~~-~d~~v~~vvl~g~g~~-F~aG~ 65 (733)
|.+|.+..+ +++|++|||||| +. |+||.+|+++|.+++++++ +|+++|+|||||.|+. ||+|+
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 344444432 678999999999 47 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe-CCcccchh-hHHhhhcCEEEE-------eCCceEeCccc
Q 004726 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL 136 (733)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav-~G~a~GgG-~~lalacD~ria-------~~~a~f~~pe~ 136 (733)
|++.+... ............++++ .+|.++||||||+| ||+|+||| ++|+++||+||+ +++++|++||+
T Consensus 335 Dl~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 335 DALLEAHK-DHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred Cccccccc-cchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 99843211 1111111122234466 67999999999999 89999999 999999999999 89999999999
Q ss_pred cCCCCCChhhhhhhcccc-CHHHH--HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhc
Q 004726 137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (733)
Q Consensus 137 ~~Gl~P~~g~~~~l~r~~-G~~~a--~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~ 213 (733)
++|++|++|++++|++++ |..++ ++|++||++++|+||+++|||++|+|++++++++.++|++++..+|.+++
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---- 488 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT---- 488 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence 999999999999999998 99999 55999999999999999999999999999999999999999999876543
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhh
Q 004726 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (733)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~k 289 (733)
.+|++++.+...+++.+ +..|.+.|..++.|+|++| ++++|++|
T Consensus 489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 536 (546)
T TIGR03222 489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG 536 (546)
T ss_pred --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence 45778888889999999 9999999999999999999 99999999
Q ss_pred hhhcC
Q 004726 290 RATSK 294 (733)
Q Consensus 290 r~~~~ 294 (733)
|+|..
T Consensus 537 r~p~f 541 (546)
T TIGR03222 537 KKAQF 541 (546)
T ss_pred CCCCC
Confidence 99874
No 88
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-44 Score=336.66 Aligned_cols=246 Identities=29% Similarity=0.458 Sum_probs=220.6
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCcccCCCCchhhhhccCCCcccccchhHHHH
Q 004726 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (733)
Q Consensus 12 ~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (733)
+.||.+|-+||| +.|+++..|+++|.++++.+..|+.+|+|+|.+. +..||+|+||++...++.. +...+....+.+
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~-Ev~~fV~~lR~~ 116 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPS-EVTRFVNGLRGL 116 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHH-HHHHHHHHHHHH
Confidence 678999999999 6899999999999999999999999999999754 6789999999998776433 244455556666
Q ss_pred HHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC
Q 004726 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (733)
Q Consensus 90 ~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i 169 (733)
+ ..|+++|.||||+|.|.++|||+||+|+||+|+|++++++|++|.+++|+|+.|||++|||.+|...|+|+++|++.+
T Consensus 117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl 195 (291)
T KOG1679|consen 117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL 195 (291)
T ss_pred H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence 7 669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCccEEcCcc----hHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHH
Q 004726 170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (733)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (733)
++.||..+||||+||... .....+.++|+++.-+.|.+ ++
T Consensus 196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPia------------------------------------vr 239 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIA------------------------------------VR 239 (291)
T ss_pred cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchh------------------------------------hh
Confidence 999999999999999765 56677888888877665543 33
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCC
Q 004726 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (733)
Q Consensus 246 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~~ 295 (733)
..|.+|+.+.+.++..++..|..+|++...+.|..|++.+|.+||+|...
T Consensus 240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~ 289 (291)
T KOG1679|consen 240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK 289 (291)
T ss_pred HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence 56789999999999999999999999999999999999999999998753
No 89
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.3e-42 Score=350.47 Aligned_cols=205 Identities=29% Similarity=0.465 Sum_probs=182.4
Q ss_pred CCcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 3 APRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 3 ~~~v~~~~~----~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|++|.++.. +++|++||||||+.|++|++|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... ..
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~ 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-QE 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-hh
Confidence 456677663 4789999999998899999999999999999999999999999999999999999998754321 11
Q ss_pred ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
........++++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..+
T Consensus 81 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~ 159 (222)
T PRK05869 81 ADTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR 159 (222)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence 111222334566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
+++++++|++++|+||+++||||+|+|++++++++.+++++++..++.+++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 210 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA 210 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999998875543
No 90
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2e-42 Score=372.97 Aligned_cols=249 Identities=21% Similarity=0.323 Sum_probs=207.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc--
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS-- 80 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~-- 80 (733)
+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++..........
T Consensus 37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 3577888 7899999999995 69999999999999999999999999999999999999999999886432111111
Q ss_pred -ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 -LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 -~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a 193 (401)
T PLN02157 116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG 193 (401)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence 1111111233 56899999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (733)
++|++||++++|+||+++||||++||++++ +++.+++.+++..++..++
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~------------------------------ 242 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVE------------------------------ 242 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHH------------------------------
Confidence 999999999999999999999999999998 6777999998876653322
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH---Hhhhhhc
Q 004726 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF---FAQRATS 293 (733)
Q Consensus 240 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF---~~kr~~~ 293 (733)
.+|+.+... ..+....+..|...+..++.+++.+|.+.+| .+||++.
T Consensus 243 ------~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~ 292 (401)
T PLN02157 243 ------SCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDT 292 (401)
T ss_pred ------HHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchH
Confidence 334444433 2345567778889999999999999999999 5555443
No 91
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-42 Score=360.78 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=203.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCC---
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--- 76 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--- 76 (733)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence 8999999998 8899999999995 6999999999999999999999999999999999999999999987421110
Q ss_pred --------------Cccc-cc---chhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccC
Q 004726 77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (733)
Q Consensus 77 --------------~~~~-~~---~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~ 138 (733)
.... .+ .....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 01 01122344 56889999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCC
Q 004726 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (733)
Q Consensus 139 Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~ 218 (733)
|+ |+ .+++++++++|+.++++|++||++++|+||+++||||+|||++++++++.++++++++.++.+++
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------- 227 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR--------- 227 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence 98 54 45777899999999999999999999999999999999999999999999999999998875433
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHH
Q 004726 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT 278 (733)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~~l~~E~~~~~~~~-~s~~ 278 (733)
.+|+.++..... ++++++..|.......+ .+++
T Consensus 228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 456677766654 68999999999888877 6665
No 92
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=7.9e-41 Score=359.91 Aligned_cols=291 Identities=21% Similarity=0.290 Sum_probs=224.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 2 ~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..........
T Consensus 7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 345788887 7899999999996 69999999999999999999999999999999999999999999875321111110
Q ss_pred ---ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHH
Q 004726 81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (733)
Q Consensus 81 ---~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~ 157 (733)
.+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 1111111223 46889999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhcc---CC---C--------------
Q 004726 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DK---L-------------- 217 (733)
Q Consensus 158 ~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~---~~---~-------------- 217 (733)
.+++|++||++++|+||+++||||++||++++.+.+.+++ +++..++..++..... .. .
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 242 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999988888 6666554433322110 00 0
Q ss_pred --CCcHHHHHHHHH---------HHHHHHHhCCCch-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Q 004726 218 --GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL 282 (733)
Q Consensus 218 --~~~~~~~~~~~~---------~~~~~~~~~~~~~-a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~ 282 (733)
..+......+.. ++...+.....-| +...+.+.++.+...++.+.++.|.+.-..+.. ++|+.||
T Consensus 243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG 322 (381)
T PLN02988 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG 322 (381)
T ss_pred CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 011111111111 1111111122223 345667788889999999999999999999988 7999999
Q ss_pred HHHHHh-h-hhhcCCC
Q 004726 283 VHVFFA-Q-RATSKVP 296 (733)
Q Consensus 283 i~aF~~-k-r~~~~~~ 296 (733)
|+|-+- | +.|+|.|
T Consensus 323 VRA~LiDKd~~P~W~p 338 (381)
T PLN02988 323 CRAILVDKDKNPKWEP 338 (381)
T ss_pred HHHHhcCCCCCCCCCC
Confidence 999886 3 4566655
No 93
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8e-41 Score=347.69 Aligned_cols=247 Identities=22% Similarity=0.254 Sum_probs=196.6
Q ss_pred CCcEEEEEe-cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCcccCCCCchhhhhcc
Q 004726 3 APRVTMEVG-NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVH 74 (733)
Q Consensus 3 ~~~v~~~~~-~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~-----d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~ 74 (733)
|.++.++.+ +++|++|||| | +.|+||.+|+++|.+++++++. |+++|+|||+|. |++||+|+|++++....
T Consensus 14 ~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~ 92 (287)
T PRK08788 14 LSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI 92 (287)
T ss_pred cCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhc
Confidence 344444442 6889999996 6 6899999999999999999998 899999999999 78999999999875321
Q ss_pred CCCcccccchh---HHHHHHHHHh---cCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh
Q 004726 75 GAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 75 ~~~~~~~~~~~---~~~~~~~~i~---~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
.......+... ..+.+ .++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~ 171 (287)
T PRK08788 93 RAGDRDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYS 171 (287)
T ss_pred cccchHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHH
Confidence 11111111111 11222 2233 79999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHH
Q 004726 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228 (733)
Q Consensus 149 ~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (733)
+|++++|..+|++|++||++++|+||+++||||+++|++++++++.+++++++.. +.+.+
T Consensus 172 ~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~------------------- 231 (287)
T PRK08788 172 FLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR------------------- 231 (287)
T ss_pred HHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999999976 32211
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHh
Q 004726 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFA 288 (733)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~-~~~~~i~aF~~ 288 (733)
++|+..+.....++++.++.|...+..++++. ...+-+..|..
T Consensus 232 -----------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 232 -----------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -----------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 22333334444678888888887777655554 44556666653
No 94
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-41 Score=342.72 Aligned_cols=201 Identities=27% Similarity=0.376 Sum_probs=178.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCccc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (733)
|+ +.+.++. +++|++||||||+.|++|++|+++|.++++.++ +++|+||++|.|++||+|+|++++... .....
T Consensus 1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~ 74 (229)
T PRK06213 1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI 74 (229)
T ss_pred Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence 53 5688888 789999999999889999999999999999998 467999999999999999999987542 11111
Q ss_pred ccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
.+.....+++ .++.++||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|.++++.++++++|...+
T Consensus 75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 2223344566 6789999999999999999999999999999999999 9999999999999888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhh
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI 208 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~ 208 (733)
++|+++|++++|+||+++||||+|+|++++.+.+.++++++++.++.++
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 202 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAH 202 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999999999999999999887543
No 95
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-40 Score=351.44 Aligned_cols=204 Identities=25% Similarity=0.337 Sum_probs=176.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCC--
Q 004726 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (733)
++|+++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 7 ~~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 7 DNLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred CCCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccc
Confidence 3477899998 7899999999994 79999999999999999999999999999999999999999999875422100
Q ss_pred -c----------------ccc-----cchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcc
Q 004726 78 -D----------------VSL-----MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135 (733)
Q Consensus 78 -~----------------~~~-----~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe 135 (733)
. ... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe 164 (302)
T PRK08272 86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPP 164 (302)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcc
Confidence 0 000 011223455 56889999999999999999999999999999999999999999
Q ss_pred ccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhh
Q 004726 136 LTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (733)
Q Consensus 136 ~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~ 209 (733)
+++|.+|.. ..+++++|+.+|++|++||++++|+||+++||||+|||++++++++.++|++|+..||.+++
T Consensus 165 ~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~ 235 (302)
T PRK08272 165 TRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA 235 (302)
T ss_pred hhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 998666643 35788999999999999999999999999999999999999999999999999998876554
No 96
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.4e-38 Score=342.79 Aligned_cols=289 Identities=22% Similarity=0.254 Sum_probs=218.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc---c
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V 79 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---~ 79 (733)
+.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........ .
T Consensus 42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4577888 7899999999995 699999999999999999999999999999999999999999998864321111 1
Q ss_pred cccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHH
Q 004726 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (733)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a 159 (733)
..+.....++. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+.|. .+
T Consensus 121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g 198 (407)
T PLN02851 121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG 198 (407)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence 11112222334 46789999999999999999999999999999999999999999999999999999999999997 59
Q ss_pred HHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhh---ccC-------------------CC
Q 004726 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH---RTD-------------------KL 217 (733)
Q Consensus 160 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~---~~~-------------------~~ 217 (733)
++|++||++++|+||+++||+|+++|.+++ +.+.+.+.++...++..+.... ... ..
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999887 5566666555443322222110 000 00
Q ss_pred CCcHHHHHHHHH---------HHHHHHHhCCCch-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 004726 218 GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH 284 (733)
Q Consensus 218 ~~~~~~~~~~~~---------~~~~~~~~~~~~~-a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~i~ 284 (733)
..+......++. ++...+.....-| +...+.+.++.+...++++.++.|.+.-..++ .++|+.|||+
T Consensus 278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 111111111111 1111121122223 44566778888999999999999999988887 4899999999
Q ss_pred HHHhh--hhhcCCC
Q 004726 285 VFFAQ--RATSKVP 296 (733)
Q Consensus 285 aF~~k--r~~~~~~ 296 (733)
|-+-. ++|+|.+
T Consensus 358 A~LIDKd~~P~W~p 371 (407)
T PLN02851 358 ARLVDKDFAPKWDP 371 (407)
T ss_pred HHhcCCCCCCCCCC
Confidence 98863 4555554
No 97
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=6.3e-39 Score=334.70 Aligned_cols=191 Identities=25% Similarity=0.356 Sum_probs=167.6
Q ss_pred EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CcccCCCCchhhhhccCCC--cccccchhHHHHH
Q 004726 15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG--DVSLMPDVSVELV 90 (733)
Q Consensus 15 i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~~ 90 (733)
+++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... ....+....++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 5679999995 7999999999999999999999999999999999 6999999999886532111 1111222233555
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCC
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~ 170 (733)
+.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+++|++++
T Consensus 118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccEEcCcchH------------HHHHHHHHHHHHccCch
Q 004726 171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP 206 (733)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~~a~~~~~ 206 (733)
|+||+++||||+|+|++++ ++.+.++++.+...++.
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 244 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA 244 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence 9999999999999999888 78888888877776543
No 98
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-40 Score=310.34 Aligned_cols=255 Identities=24% Similarity=0.340 Sum_probs=220.9
Q ss_pred CCcEEEEE--ecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC----
Q 004726 3 APRVTMEV--GNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---- 75 (733)
Q Consensus 3 ~~~v~~~~--~~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~---- 75 (733)
|+.+.+.+ .+..|.++.|||| +.|++|..|+.|+.++|+.+..||++|+|||+|+|++||+|+|+..+.....
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 55455553 2556999999999 6899999999999999999999999999999999999999999877654311
Q ss_pred CCc-------ccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh
Q 004726 76 AGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (733)
Q Consensus 76 ~~~-------~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~ 148 (733)
..+ ..+++...++.+ ..|++||||||++|||+|+|+|+.|..|||+|+++++|.|+.-|+.+|+..+.|..+
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 111 122333455666 579999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccC-HHHHHHHHHcCCCCCHHHHHHcCCccEEcC-cchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHH
Q 004726 149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (733)
Q Consensus 149 ~l~r~~G-~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (733)
|||..+| ...++++.+|++.++|.||++.|||.+|+| .+++++.+..+|+.|+.++|.+..
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq----------------- 239 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ----------------- 239 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence 9999999 899999999999999999999999999997 478999999999999999886433
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
..|+.+..+.+++.++.|..-+-+-...+.|+|..+.+.+-++|+++..
T Consensus 240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~t 288 (292)
T KOG1681|consen 240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVT 288 (292)
T ss_pred -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 3467788888899999999888888888899999999999998777654
No 99
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.7e-38 Score=333.88 Aligned_cols=262 Identities=25% Similarity=0.348 Sum_probs=244.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
|++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..+..+.+.|.++..+....++++..++++ ++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 568999999999999999999999999999999999999999999999999999999888888888888888888 5689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+|+|++.++++.+++++.+.++++++++|+||+.+++++++.+.++.++++.||++|++.++++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhh--
Q 004726 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLA-- 538 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p---~Gpf~~~D~~-- 538 (733)
++++.+.++++.+|++|+++ ++.|||++||++.++++||+.++++| +++++||.++ .++|++ +|||+++|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 58999999999999999999999997 5999999999 789988 8999999987
Q ss_pred -chHHHHHHHHHHHHhCCCCCC-CcHHHHHHHH
Q 004726 539 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK 569 (733)
Q Consensus 539 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~ 569 (733)
|++.+......++.++++..+ |+|++++|++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 899999999899988887555 8888888877
No 100
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=1.7e-38 Score=324.22 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=169.0
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCcccCCCCchhhhhccCCCc-ccccc
Q 004726 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (733)
Q Consensus 6 v~~~~~~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (733)
++++. +++|++|+||||+.|++|.+|+++|.++++.++.|++++ +||++|.|++||+|+|++++........ ...+.
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 46777 789999999999789999999999999999999998875 7777999999999999998643211111 11122
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeCccccCCCC-CChhhhhhhccccCHHHH-H
Q 004726 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVI-PGFGGTQRLPRLVGLSKA-I 160 (733)
Q Consensus 84 ~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~-~~a~f~~pe~~~Gl~-P~~g~~~~l~r~~G~~~a-~ 160 (733)
....+++ .++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |+++ +.+|++++|..++ +
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~-~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYF-MALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHH-HHHHHHHcChHHHHH
Confidence 3344566 56999999999999999999999999999999998 568999999999997 6554 7899999999999 6
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCc-chHHHHHHHHHHHHHccCc
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRK 205 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~ 205 (733)
+|+++|++++|+||+++||||+|+|+ +++++++.++|+++++.++
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW 204 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999985 6899999999999998754
No 101
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-38 Score=295.42 Aligned_cols=252 Identities=28% Similarity=0.379 Sum_probs=203.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CcccCCCCchhhhhc---cC
Q 004726 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG 75 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~--g-~~F~aG~Dl~~~~~~---~~ 75 (733)
|+.|.++...++|+.||+|||. +|++.|..+.||.++|..++.|++|.+|||||. | ..||+|+|-+-.... ..
T Consensus 17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 6788999844899999999995 799999999999999999999999999999985 4 689999998754331 11
Q ss_pred CCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccC
Q 004726 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (733)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G 155 (733)
+....++. ..+ +++.|+.+||||||.|+|+++|||-.|-+.||+.||+++|+|+....++|-+-++.++..|.|++|
T Consensus 97 d~~~~rLn--vLd-lQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 97 DDGIPRLN--VLD-LQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CccCcccc--hhh-HHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 11111111 112 236789999999999999999999999999999999999999999999999988888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (733)
..+|+|+.+.++.++|+||+++|+||.|||.++|++++.+|++++.++||.++|-
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~------------------------- 228 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRM------------------------- 228 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999865542
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 236 ~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
+|-+.+. ...++.-.-+.--.+......++|++|+..+|++||+|..
T Consensus 229 -----------LK~Afna-d~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 229 -----------LKAAFNA-DCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred -----------HHHHhcC-CCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 1222211 1111111112222223345689999999999999999874
No 102
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=292.75 Aligned_cols=253 Identities=22% Similarity=0.274 Sum_probs=224.3
Q ss_pred CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (733)
|.|+.+.+++ .+++.+|.+| ||+ .|+++.+++.++..+++.+.+|+++..++++|.|++||+|.|+..+......+.
T Consensus 4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 6678888888 8999999999 995 799999999999999999999999999999999999999999998876443321
Q ss_pred c---cccchhHH--HHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccc
Q 004726 79 V---SLMPDVSV--ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (733)
Q Consensus 79 ~---~~~~~~~~--~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 153 (733)
. ........ ..+.+.+.++|||+||.|||+|+|.|..+...||+++|+|+++|..|+.++|..|.+|+++.+|++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 1 11111111 124467899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004726 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (733)
Q Consensus 154 ~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (733)
+|...|.||++.|++++|+||.+.|||+++++.+++.+.++.-++++++.+|..++
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------ 218 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------ 218 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998876554
Q ss_pred HHHhCCCchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 004726 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (733)
Q Consensus 234 ~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr 290 (733)
.+|++++......+..+.+.|.......|.|+|+.+.+.+|+.+.
T Consensus 219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 346777777778889999999999999999999999999999754
No 103
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=6.4e-36 Score=291.52 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=161.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||.+||..++++|++|++||++++.++++.+++++.++..+++|.+++++....++++.++++++.+.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998777999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHH
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~ 469 (733)
+||||+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.+|+|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEcCC
Q 004726 470 LDLMTVGKIIKKVPVVVGNC 489 (733)
Q Consensus 470 ~~~~~l~~~lG~~~v~v~d~ 489 (733)
+++.+|++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
No 104
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.9e-35 Score=331.08 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=176.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CcccCCCCc
Q 004726 1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI 67 (733)
Q Consensus 1 m~~~~v~~~~~~~~i~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~d~~v~~vvl~g~g-~~F~aG~Dl 67 (733)
|+++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||.+ ++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 6788999999 789999999954 569999999999999999998 78999999999974 899999999
Q ss_pred hhhhhccCCCcccccchh---HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCcccc-CCCC
Q 004726 68 NVFQKVHGAGDVSLMPDV---SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI 141 (733)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~Gl~ 141 (733)
+++....... ....... ....+.+.+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875421111 0011111 1122224578899999999999999999999999999999987 899999997 9999
Q ss_pred CChhhhhhhc--cccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCch
Q 004726 142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (733)
Q Consensus 142 P~~g~~~~l~--r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~ 206 (733)
|++|++++|+ +++|..+|++|++||++++|+||+++||||+|||++++++++.++|+++++.++.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 7799999999999999999999999999999999999999999999999998763
No 105
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.6e-35 Score=330.23 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=174.1
Q ss_pred CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCcccCCCCchh
Q 004726 3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV 69 (733)
Q Consensus 3 ~~~v~~~~~~~~i~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~d~~v~~vvl~g~-g~~F~aG~Dl~~ 69 (733)
|++|.+++ +++|++|||||| +.|++|.+|+.+|.++++.++ .|+++|+|||||. |++||+|+|+++
T Consensus 10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 46788998 789999999996 469999999999999999999 7899999999987 589999999998
Q ss_pred hhhccCCCcccccchhH----HHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeCcccc-CCCCC
Q 004726 70 FQKVHGAGDVSLMPDVS----VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP 142 (733)
Q Consensus 70 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~--a~f~~pe~~-~Gl~P 142 (733)
+....... ........ ..+. +.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~i~-~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P 166 (546)
T TIGR03222 89 LGLSTHAW-KVNFCKFTNETRNGIE-DSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLP 166 (546)
T ss_pred Hhccccch-hhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCC
Confidence 75321111 01111111 1222 4577899999999999999999999999999999986 799999997 99999
Q ss_pred Chhhhhhhc--cccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCch
Q 004726 143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (733)
Q Consensus 143 ~~g~~~~l~--r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~ 206 (733)
++|++++++ +++|..+|++|+++|++++|+||++|||||+|||++++++++.++|+++++.+|.
T Consensus 167 ~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 167 GTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred ccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999997 6999999999999999999999999999999999999999999999999998763
No 106
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=1.4e-34 Score=325.76 Aligned_cols=243 Identities=25% Similarity=0.330 Sum_probs=207.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++||+|||+|+||++||..|+++|++|++||+++++++...+.++....... .+... .....+++.+++++ ++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~~ 79 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAVA 79 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHhc
Confidence 5689999999999999999999999999999999998765433222211111 11111 11123457777777 5789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
+||+||+|+||+.++|+++++++.+.+++++||+|+||+++++++++.+..+.++++.|||+|++.++++|+++++.|++
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhch
Q 004726 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGY 540 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~G-v~~~dID~a~-~~~G~p---~Gpf~~~D~~Gl 540 (733)
++++++.++++.+|+.++++ ++.|||++||++.++++||+.++++| +++++||+++ .++|++ +|||+++|+.|+
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~ 239 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGG 239 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCc
Confidence 99999999999999999999 59999999999999999999999997 5999999999 788875 799999999985
Q ss_pred H-HHHHHHHHHHHhC
Q 004726 541 G-VAAATSKEFDKAF 554 (733)
Q Consensus 541 d-~~~~~~~~l~~~~ 554 (733)
+ .+.+.++++.+.+
T Consensus 240 ~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 240 EAGMRHFLAQFGPCL 254 (495)
T ss_pred HHHHHHHHHHhchhh
Confidence 4 5566666665544
No 107
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=3.3e-35 Score=292.60 Aligned_cols=191 Identities=44% Similarity=0.702 Sum_probs=173.3
Q ss_pred EEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCc-ccccch
Q 004726 7 TMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMPD 84 (733)
Q Consensus 7 ~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~~ 84 (733)
.++. +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||+|.|+.||+|.|++++........ ...+..
T Consensus 2 ~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~ 80 (195)
T cd06558 2 LVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR 80 (195)
T ss_pred EEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence 5666 6799999999996 899999999999999999999999999999999999999999999876433221 223444
Q ss_pred hHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHH
Q 004726 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (733)
Q Consensus 85 ~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~l 164 (733)
..++++ ..+.++||||||++||+|.|+|++++++||+||++++++|++||+++|++|++|++++|++++|...++++++
T Consensus 81 ~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l 159 (195)
T cd06558 81 ELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLL 159 (195)
T ss_pred HHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 455666 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHH
Q 004726 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (733)
Q Consensus 165 tG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (733)
+|++++++||+++||||++++.+++.+++.+++++
T Consensus 160 ~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 160 TGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred cCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 99999999999999999999999999999988875
No 108
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9.9e-35 Score=275.22 Aligned_cols=231 Identities=26% Similarity=0.394 Sum_probs=213.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCH-HHHHHHhhccccccCc-ccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ-DKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~-~~~~~~~~~i~~~~~~-~~l 385 (733)
..||+|+|.|.+|+++|..+++.||+|.+||+.+++++.+++.+++.+..+-++|.+.. -++++.+..|..++++ +.+
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 57999999999999999999999999999999999999999999999888877654331 1345667788889998 778
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~ 465 (733)
++|=.|-|||||++.+|+.++++++..+.+.+|++|+||++.++...+.+.+.++++..||.|||+..|+||++|.+-|+
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTs 162 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTS 162 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEE-cCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc---cHHHHHHhh
Q 004726 466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLLDLA 538 (733)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v-~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~---Gpf~~~D~~ 538 (733)
|+++++..++++.+|..||.. .+.-||..||+.++++||-.+++..|+ +..|+|.+| .|+|.+. ||+|++.+-
T Consensus 163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 163 PDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred hhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 999999999999999999988 689999999999999999999999997 999999999 8999763 999998874
No 109
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=6.1e-34 Score=264.23 Aligned_cols=245 Identities=23% Similarity=0.347 Sum_probs=204.8
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 12 ~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+++|-.|+||+|+ +|.++..|+.+|...+....+..++|+|||+..|+.||+|.||+++..........+......+.+
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm 118 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM 118 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence 6899999999995 899999999999999999888889999999999999999999999976443332233344455666
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCC
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~ 170 (733)
.-|+++|+|||+-|||.+..+||.|...||++||+++++|..|...+|++-...| .-|.|.+++..+.+|++||.+|+
T Consensus 119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHHHhCCCCc
Confidence 5699999999999999999999999999999999999999999999999754444 34789999999999999999999
Q ss_pred HHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Q 004726 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (733)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (733)
++||+..|||.+|||++++..++.+++.+|-..+...+. ..+ +-
T Consensus 197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------lgk------------------------~f 240 (287)
T KOG1682|consen 197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------LGK------------------------EF 240 (287)
T ss_pred hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------HHH------------------------HH
Confidence 999999999999999999999999999998776643211 111 12
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcC
Q 004726 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (733)
Q Consensus 251 i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~kr~~~~ 294 (733)
......++-.++...-.+.+...++-.|.+|+|.+|++||.|.+
T Consensus 241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 22223344556666677778888899999999999999999876
No 110
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=2.8e-30 Score=261.01 Aligned_cols=290 Identities=23% Similarity=0.306 Sum_probs=216.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCcccCCCCchhhhhccCCCcccc
Q 004726 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSL 81 (733)
Q Consensus 4 ~~v~~~~~~~~i~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (733)
+.|.++. .+...+||||||+ .||+|.+|...+.-.+..++.++.+++||+.|. |++||+|+|++.........+...
T Consensus 38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 4677887 7889999999997 699999999999999999999999999999887 589999999986654332222211
Q ss_pred cchhHH---HHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHH
Q 004726 82 MPDVSV---ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (733)
Q Consensus 82 ~~~~~~---~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~ 158 (733)
....+. .+. ..|.++.||.||.++|..+|||+.|+.+.-||||++++.|++||..+|++|+.|++++|+|+.| ..
T Consensus 117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 111111 223 4689999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHHccCchhhhhh----hcc----------------C--C
Q 004726 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL----HRT----------------D--K 216 (733)
Q Consensus 159 a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~----~~~----------------~--~ 216 (733)
..++.+||+++++.||+..||.++-||.+.+..--.++...+...|-..+... ... . .
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 99999999999999999999999999987664433344422222111111110 000 0 0
Q ss_pred CCCcHHHHHHHHHH----------HHHHHHhCCCch-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004726 217 LGSLSEAREVLKLA----------RLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV 285 (733)
Q Consensus 217 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~-a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~a 285 (733)
.....++.+.+... ..+.+.....-| ..+-..+.++++....+++.+..|-+.-.....+.|+.|+++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 01111122211111 111222222223 5556678899999999999999999999999999999999999
Q ss_pred HHh--hhhhcCCC
Q 004726 286 FFA--QRATSKVP 296 (733)
Q Consensus 286 F~~--kr~~~~~~ 296 (733)
-+- .+.|+|.|
T Consensus 355 ~LIDKd~~PKW~p 367 (401)
T KOG1684|consen 355 VLIDKDQNPKWDP 367 (401)
T ss_pred eeecCCcCCCCCC
Confidence 875 35666655
No 111
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.93 E-value=1.1e-25 Score=252.89 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=148.0
Q ss_pred hCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 412 ACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 412 ~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
.+.+++++++..++.+.+..+....+|++++|+|||+|++.++++|++++..|++++++.+.++++.+||.|++++|.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 34567777777776666676666678899999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHH
Q 004726 492 FAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLL 568 (733)
Q Consensus 492 fi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v 568 (733)
||+||++.+++|||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|+++++++.+++.+++ ++.|++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999997 999999999 8999999999999999999999999999999986 555899999999
Q ss_pred HcCC
Q 004726 569 KSGR 572 (733)
Q Consensus 569 ~~g~ 572 (733)
++|.
T Consensus 497 ~~G~ 500 (507)
T PRK08268 497 ALGL 500 (507)
T ss_pred HcCC
Confidence 9875
No 112
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.90 E-value=3.1e-24 Score=188.07 Aligned_cols=94 Identities=40% Similarity=0.689 Sum_probs=87.4
Q ss_pred CcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHH
Q 004726 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL 567 (733)
Q Consensus 491 Gfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 567 (733)
|||+||++.++++||++++++|+ +|+|||+++ .++|+|+|||+++|.+|+|++.++++.+.+.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999995 999999999 7899999999999999999999999999999998854 79999999
Q ss_pred HHcCCCCcccCcccccc
Q 004726 568 LKSGRNGKANGKGLYTY 584 (733)
Q Consensus 568 v~~g~~G~k~g~Gfy~y 584 (733)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 113
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.87 E-value=3.4e-20 Score=207.99 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=113.3
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchhhhhHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccH
Q 004726 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 531 (733)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl~~~~~~Ea~~l~~~Gv-~~~dID~a~-~~~G~p~Gp 531 (733)
..+||+++..|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+| .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 468899999999999999999999999999999999999999999999999999999998 899999999 899999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHHHcCC
Q 004726 532 FQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGR 572 (733)
Q Consensus 532 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~ 572 (733)
|+|+|.+|+|+++++++++++.+++ ++.|+++|++|+..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 9999999999999999999999986 4558999999999875
No 114
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.86 E-value=5.3e-22 Score=173.89 Aligned_cols=94 Identities=33% Similarity=0.490 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCC-CCCCHH
Q 004726 621 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPSRF 699 (733)
Q Consensus 621 ~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~-~~p~~~ 699 (733)
+||+||++.+++|||+++++||++ +|++||.+++.|+|||+ |||+++|.+|+|++.++++.+.+.+++. +.|+++
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL 76 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence 578999999999999999999998 89999999999999998 9999999999999999999999999985 889999
Q ss_pred HHHHHHCCCCc--cccceeec
Q 004726 700 LEERATKGIPL--VRIIFHRF 718 (733)
Q Consensus 700 l~~~~~~g~~g--~g~gfy~y 718 (733)
+++|+++|++| +|+|||+|
T Consensus 77 l~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 77 LKEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHHCCCCcCcCCCcceeC
Confidence 99999999999 89999998
No 115
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.84 E-value=6.4e-21 Score=181.60 Aligned_cols=97 Identities=29% Similarity=0.431 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC--CCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKP 696 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~--~~~p 696 (733)
+++||+||+|.|+++||.|+++.|.+ +-+|||.+|++|.|||| |||+++|.+|+|++..+|..|+..+++ .|.|
T Consensus 198 tpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~p 273 (298)
T KOG2304|consen 198 TPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAP 273 (298)
T ss_pred CCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCC
Confidence 68999999999999999999999999 99999999999999999 999999999999999999999999854 7999
Q ss_pred CHHHHHHHHCCCCc--cccceeecC
Q 004726 697 SRFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 697 ~~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
+|+|.++++.|++| .|.|||+|.
T Consensus 274 sPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 274 SPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred ChHHHHHHhccccccccCccceecC
Confidence 99999999999999 799999994
No 116
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1.1e-18 Score=184.24 Aligned_cols=99 Identities=27% Similarity=0.342 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~ 698 (733)
.++|+.||++.+++|||++|+++|++ +++|||.+|++|+|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 183 ~~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 258 (288)
T PRK09260 183 FPGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAP 258 (288)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCH
Confidence 47999999999999999999999997 99999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCc--cccceeecCCC
Q 004726 699 FLEERATKGIPL--VRIIFHRFSNI 721 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~~ 721 (733)
+|.+|+++|++| +|+|||+|++.
T Consensus 259 ~l~~~~~~g~~G~k~g~Gfy~y~~~ 283 (288)
T PRK09260 259 LLEKYVKAGRLGRKTGRGVYDYTNR 283 (288)
T ss_pred HHHHHHHCCCCccccCCEEEECCCC
Confidence 999999999999 89999999864
No 117
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.76 E-value=2e-18 Score=181.28 Aligned_cols=96 Identities=24% Similarity=0.366 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
+++|+.||++.+++|||++|++||++ +++|||.+++.|+|||+ |||+++|.+|+|.++++++.+++.+++ +|.|+
T Consensus 188 ~pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~ 263 (286)
T PRK07819 188 RSGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPP 263 (286)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCC
Confidence 57999999999999999999999997 89999999999999998 999999999999999999999998886 89999
Q ss_pred HHHHHHHHCCCCc--cccceeec
Q 004726 698 RFLEERATKGIPL--VRIIFHRF 718 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y 718 (733)
+++++|+++|++| +|+|||+|
T Consensus 264 ~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 264 PLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999 89999999
No 118
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.76 E-value=3.3e-18 Score=167.08 Aligned_cols=144 Identities=19% Similarity=0.142 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCCccc
Q 004726 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (733)
Q Consensus 31 ~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~ 110 (733)
-.+.+|.++++.+++|+++|+|||++ +|.|.|+.... ...+.+ ..+.+++|||||++||.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCchh
Confidence 35789999999999999999999986 68898876431 122345 5678899999999999999
Q ss_pred chhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh--------hhccccC--HHHHHHHHHcCCCCCHHHHHHcCCc
Q 004726 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGLI 180 (733)
Q Consensus 111 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~--------~l~r~~G--~~~a~~l~ltG~~i~a~eA~~~Glv 180 (733)
|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| +...++++..|..++|++|++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999988776433222222 3444545 7888999999999999999999999
Q ss_pred cEEcCcchHHHH
Q 004726 181 DAVVTSEELLKV 192 (733)
Q Consensus 181 ~~vv~~~~l~~~ 192 (733)
|++.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999998877653
No 119
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.75 E-value=2.8e-18 Score=180.74 Aligned_cols=97 Identities=26% Similarity=0.415 Sum_probs=92.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCC
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKP 696 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p 696 (733)
-++++|.||++.+++|||++|+++|++ +|+|||.++++|+|||+ |||+++|.+|+|.+.++++.+.+.+++ +|+|
T Consensus 183 d~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~ 258 (282)
T PRK05808 183 NAPGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRP 258 (282)
T ss_pred CccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCC
Confidence 468999999999999999999999997 79999999999999998 999999999999999999999999886 8999
Q ss_pred CHHHHHHHHCCCCc--cccceeec
Q 004726 697 SRFLEERATKGIPL--VRIIFHRF 718 (733)
Q Consensus 697 ~~~l~~~~~~g~~g--~g~gfy~y 718 (733)
++++++|+++|++| +|+|||+|
T Consensus 259 ~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 259 CPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred CHHHHHHHHCCCCccccCCcccCC
Confidence 99999999999999 89999999
No 120
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.75 E-value=2.9e-18 Score=177.57 Aligned_cols=99 Identities=24% Similarity=0.391 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhC--CCCC
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG--NFFK 695 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~--~~~~ 695 (733)
=+++||+||++.++++||++++.+|++ +|++||.+|+.|+|||+ |||+++|.+|+|..+++++.+.+.++ +.|.
T Consensus 183 D~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~ 258 (307)
T COG1250 183 DVPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYR 258 (307)
T ss_pred CCCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccc
Confidence 368999999999999999999999999 89999999999999998 99999999999999999999998877 4688
Q ss_pred CCHHHHHHHHCCCCc--cccceeecCC
Q 004726 696 PSRFLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 696 p~~~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
|++++++|+++|++| +|+|||+|++
T Consensus 259 ~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 259 PPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred ccHHHHHHHhcccccccCCCcceeccc
Confidence 899999999999999 8999999996
No 121
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.75 E-value=9.1e-18 Score=172.23 Aligned_cols=187 Identities=21% Similarity=0.209 Sum_probs=139.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.||+|||+|.||.+||.+|.++||+|++||+++++..... .+.| .....+..+++++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G------------a~~a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG------------ATVAASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC------------CcccCCHHHHHHhC
Confidence 3799999999999999999999999999999999843221 1222 12222233788999
Q ss_pred CEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHHH---HhcccCCCCcEEEEecCCCCCCCCe-------e
Q 004726 389 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGAHFFSPAHVMPL-------L 456 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~~~ig~h~~~p~~~~~l-------v 456 (733)
|+||.|||++.++...++. .+.+.+++++++++ .||++++. +++.+. -.|.+|.+.|..+.. +
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999999999888884 58888899999875 44555543 333332 236777776654422 3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC-----cchhhhhHH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG-----fi~nRl~~~----~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
.|+.|. +++.+++++++++.+|+.++++++. | -++|+++.. -+.||+.+.+. |++++.+..++ .+.
T Consensus 134 timvGG--~~~~f~r~~pvl~~~g~~i~~~G~~-G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~ 210 (286)
T COG2084 134 TIMVGG--DAEAFERAKPVLEAMGKNIVHVGPV-GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA 210 (286)
T ss_pred EEEeCC--CHHHHHHHHHHHHHhcCceEEECCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence 344443 8999999999999999999999875 4 355777543 34699999977 89999999999 443
No 122
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.73 E-value=1.1e-17 Score=177.32 Aligned_cols=98 Identities=23% Similarity=0.342 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
+++++.||++.+++|||++++++|++ +++|||.++++|+|||+ |||+++|.+|++.++++++.+++.+++ +|.|+
T Consensus 185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 260 (295)
T PLN02545 185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPC 260 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCC
Confidence 47899999999999999999999997 89999999999999998 999999999999999999999998886 79999
Q ss_pred HHHHHHHHCCCCc--cccceeecCC
Q 004726 698 RFLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
+++++|+++|++| +|+|||+|++
T Consensus 261 ~~l~~~~~~g~~G~k~g~Gfy~y~~ 285 (295)
T PLN02545 261 PLLVQYVDAGRLGRKSGRGVYHYDG 285 (295)
T ss_pred HHHHHHHHCCCCcccCCCeeeECCC
Confidence 9999999999999 8999999975
No 123
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.73 E-value=3.9e-17 Score=160.62 Aligned_cols=149 Identities=25% Similarity=0.270 Sum_probs=118.3
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
++|.++. .++..+...+.+.++.+++++ ++.|+|. ..+ |+++.. ...++ ..|
T Consensus 2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~----------------~~~i~-~~l 54 (187)
T cd07020 2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS----------------TREIV-QAI 54 (187)
T ss_pred EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH----------------HHHHH-HHH
Confidence 5666654 367778899999999998665 7878775 332 233321 12445 567
Q ss_pred hcCCCcEEEEeC---CcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCCh--------------hhhhhhccccCH-
Q 004726 95 EDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL- 156 (733)
Q Consensus 95 ~~~~kp~Iaav~---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~--------------g~~~~l~r~~G~- 156 (733)
..+||||||+|+ |+|.|||+.++++||+++++++++|+.+++..+..+.. +....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 889999999999 99999999999999999999999999999985544432 245578888887
Q ss_pred -HHHHHHHHcCCCCCHHHHHHcCCccEEcCcc-hHHH
Q 004726 157 -SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLK 191 (733)
Q Consensus 157 -~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~-~l~~ 191 (733)
.++++++++|+.++|+||+++||||+|+++. ++..
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 6899999999999999999999999999876 5554
No 124
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=1.6e-17 Score=175.25 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCC--CC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KP 696 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~--~p 696 (733)
.++|+.||++.+++|||++++++|++ +|+|||.+|..|+|||+ |||+++|.+|+|.++++++.+.+.+++.+ .|
T Consensus 187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~ 262 (287)
T PRK08293 187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA 262 (287)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence 57899999999999999999999999 89999999999999998 99999999999999999999999888743 48
Q ss_pred CHHHHHHHHCCCCc--cccceeecC
Q 004726 697 SRFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 697 ~~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
++++++|+++|++| +|+|||+|+
T Consensus 263 ~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 263 AALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred hHHHHHHHHCCCCcccCCCccccCc
Confidence 89999999999999 899999995
No 125
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.71 E-value=2.7e-17 Score=173.92 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
.++++.||++.+++|||+++++||++ +++|||.+|+.++|||+ |||+++|.+|+|.+.++++.+++.+++ +|.|+
T Consensus 187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 262 (291)
T PRK06035 187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPP 262 (291)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCcc
Confidence 57899999999999999999999999 89999999999999998 999999999999999999999998886 78999
Q ss_pred HHHHHHHHCCCCc--c-----ccceeec
Q 004726 698 RFLEERATKGIPL--V-----RIIFHRF 718 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~-----g~gfy~y 718 (733)
++|++|+++|++| + |+|||+|
T Consensus 263 ~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 263 NSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 9999999999999 8 8999999
No 126
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=4.8e-17 Score=172.24 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~ 697 (733)
.+++|.||++.+++||+++++++|++ ++++||.++++|+|||+ |||+++|.+|+|.++++++.+.+.+++ +|.|+
T Consensus 185 ~pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~ 260 (292)
T PRK07530 185 FPAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPC 260 (292)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 46899999999999999999999997 99999999999999997 999999999999999999999988876 79999
Q ss_pred HHHHHHHHCCCCc--cccceeecCCC
Q 004726 698 RFLEERATKGIPL--VRIIFHRFSNI 721 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~~~ 721 (733)
++|++|+++|++| +|+|||+|++.
T Consensus 261 ~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 261 PLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999999999 89999999643
No 127
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.69 E-value=3e-16 Score=166.14 Aligned_cols=187 Identities=19% Similarity=0.238 Sum_probs=135.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||.+||..|++.|++|++||+++++++... +.|. ...++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA------------VTAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC------------cccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876642 2221 11122226788999
Q ss_pred EEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCC-------CCeeE
Q 004726 390 MVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-------MPLLE 457 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~-------~~lve 457 (733)
+||+|+|++..++..++. .+...++++++|++ +|+.++. ++.+.+... |+||.++|.. ...++
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999988777766653 35667788888874 5555454 344444322 4455443322 12244
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCC---cchhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 526 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pG---fi~nRl~~~~----~~Ea~~l~~~-Gv~~~dID~a~-~~~G 526 (733)
++.+. ++++++.+.++++.+|+.++++++ .+| +++|+++.+. ++|++.+.+. |++++++..++ .+.+
T Consensus 133 i~~gg--~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVGG--DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEecC--CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 55553 689999999999999999999975 445 4778887654 7899998866 89999999999 4444
No 128
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=1.3e-16 Score=169.36 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCH
Q 004726 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSR 698 (733)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~-~~~p~~ 698 (733)
++++.||++.++++|++.|+++|++ ++++||.++..|+|||++..|||+++|.+|+|.++++++.+.+.+++ +|.|++
T Consensus 182 ~Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~ 260 (314)
T PRK08269 182 PGYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPA 260 (314)
T ss_pred CCcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 5789999999999999999999997 89999999999999998889999999999999999999999988887 899999
Q ss_pred HHHHHHHCCCCc--cccceeecCC
Q 004726 699 FLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
+|++|+++|++| +|+|||+|++
T Consensus 261 ~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 261 IVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHCCCCcccCCCcceeCCC
Confidence 999999999999 8999999964
No 129
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.68 E-value=8.7e-16 Score=163.09 Aligned_cols=187 Identities=17% Similarity=0.214 Sum_probs=136.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.++|..|++.|++|++||+++++.++.. +.| +..++++ +.+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~ 58 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAEQ 58 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHhc
Confidence 5899999999999999999999999999999998866532 112 2223344 56789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCCC-------Ce
Q 004726 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------PL 455 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~~-------~l 455 (733)
||+||+|+|+...++..++. .+.+.++++++|+ ++|+..+. ++.+.+... |.||.++|..+ ..
T Consensus 59 ~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~ 133 (296)
T PRK11559 59 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGT 133 (296)
T ss_pred CCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCc
Confidence 99999999988877666553 4677788899887 45555544 344433222 55666655332 33
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcc---hhhhhHH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pGfi---~nRl~~~----~~~Ea~~l~~~-Gv~~~dID~a~-~~~ 525 (733)
++++.+. +++.++.+.++++.+|+.++++++ .+|++ +|+++.+ .++|++.+++. |+++++++.++ .++
T Consensus 134 l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~ 211 (296)
T PRK11559 134 LSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211 (296)
T ss_pred EEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence 4555553 689999999999999999999975 45664 6776543 47899999876 89999999998 444
Q ss_pred C
Q 004726 526 G 526 (733)
Q Consensus 526 G 526 (733)
+
T Consensus 212 ~ 212 (296)
T PRK11559 212 A 212 (296)
T ss_pred c
Confidence 3
No 130
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.64 E-value=4.6e-16 Score=182.11 Aligned_cols=99 Identities=23% Similarity=0.239 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~ 698 (733)
+++||+||++.+++|||++++++|+ +++|||.+|. ++|||+ |||+++|.+|+|.++++++.+++.++++|.|++
T Consensus 486 ~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~ 559 (699)
T TIGR02440 486 KAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPA 559 (699)
T ss_pred ccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcH
Confidence 5899999999999999999999995 6999999986 899999 999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCc--cccceeecCCCcc
Q 004726 699 FLEERATKGIPL--VRIIFHRFSNIFS 723 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~~~~ 723 (733)
++++|+++|++| +|+|||+|+..+.
T Consensus 560 ~l~~~v~~G~lG~ksg~GfY~y~~~~~ 586 (699)
T TIGR02440 560 VFDKLLSDDRKGRKNGKGFYLYGAATK 586 (699)
T ss_pred HHHHHHHCCCCcccCCcEEEeCCCCCC
Confidence 999999999999 8999999986543
No 131
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.63 E-value=4.2e-15 Score=156.18 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=119.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||+++|..|.++|++|++||++++.++++.+ .|.++ ..+++.+.+++||
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence 7999999999999999999999999999999988776532 23211 1233445678999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCC------------CCCeeE
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 457 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~------------~~~lve 457 (733)
+||+|+| .....++++++.+.++++++|+ ++++.....+........+|+++||+.++. .++...
T Consensus 60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 60 LVILALP--IGLLLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred EEEEcCC--HHHHHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 9999999 5555678899998888888775 455566555555444455799999976543 334555
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
+++++.++++.++.+.++++.+|..++.+++
T Consensus 137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 137 LTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 8888899999999999999999999998853
No 132
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.62 E-value=1.1e-15 Score=179.46 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=91.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCH
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR 698 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~ 698 (733)
+++||+||++.+++|||++++++|+ +++|||.+++ ++|||+ |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus 491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~ 564 (708)
T PRK11154 491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPA 564 (708)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCH
Confidence 5799999999999999999999997 5999999988 899999 999999999999999999999998999999999
Q ss_pred HHHHHHHCCCCc--cccceeecCC
Q 004726 699 FLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 699 ~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
++++|+++|++| +|+|||+|+.
T Consensus 565 ~l~~~v~~g~~G~k~g~GfY~y~~ 588 (708)
T PRK11154 565 AFDKLLNDDRKGRKNGRGFYLYGQ 588 (708)
T ss_pred HHHHHHHCCCCcccCCceEEECCC
Confidence 999999999999 8999999984
No 133
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.60 E-value=2.7e-15 Score=160.43 Aligned_cols=100 Identities=21% Similarity=0.176 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHH
Q 004726 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF 699 (733)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~~~ 699 (733)
++++.||++.++++||+.++++|++ +++++|.++..|+|||++..|||+++|.+|+|.+.+++..+.+.++++|.|+++
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (311)
T PRK06130 183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPL 261 (311)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHH
Confidence 6789999999999999999999998 899999999999999998899999999999999999999999989999999999
Q ss_pred HHHHHHCCCCc--cccceeecCC
Q 004726 700 LEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 700 l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
+++|+++|++| +|+|||+|++
T Consensus 262 l~~~~~~g~~G~~~g~gfy~y~~ 284 (311)
T PRK06130 262 LEEKVEAGELGAKSGQGFYAWPP 284 (311)
T ss_pred HHHHHHcCCccccCCCcCccCCC
Confidence 99999999999 7999999974
No 134
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.59 E-value=3e-15 Score=175.53 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=91.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCC--
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFK-- 695 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~-- 695 (733)
-+++||+||++.+++|||+++++||+ ++++||.++ .++|||+ |||+++|.+|+|+.+++++.+...++++|.
T Consensus 515 d~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~---GP~~l~D~vGld~~~~v~~~l~~~~~~~~~~~ 588 (737)
T TIGR02441 515 DGPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPV---GAATLADEVGVDVAEHVAEDLGKAFGERFGGG 588 (737)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCcccccc
Confidence 36899999999999999999999997 699999996 6999999 999999999999999999999988888774
Q ss_pred CCHHHHHHHHCCCCc--cccceeecCCCc
Q 004726 696 PSRFLEERATKGIPL--VRIIFHRFSNIF 722 (733)
Q Consensus 696 p~~~l~~~~~~g~~g--~g~gfy~y~~~~ 722 (733)
|++++++|+++|++| +|+|||+|++.+
T Consensus 589 ~~~~l~~~v~~G~~G~k~G~GfY~y~~~~ 617 (737)
T TIGR02441 589 SAELLSELVKAGFLGRKSGKGIFIYQEGK 617 (737)
T ss_pred cCHHHHHHHHCCCCcccCCCeeEEcCCCC
Confidence 689999999999999 899999998543
No 135
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.59 E-value=7.4e-15 Score=147.37 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=114.4
Q ss_pred cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 14 ~i~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+|++|.++-| + .+..+...+.+|.++|+.+..||++++|||+ .||+|+|+..+.. ..+.+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence 4777777766 2 3444456789999999999999999999998 7999999977532 12334
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccC------CCCCChhhhhhhccc-----------
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL------GVIPGFGGTQRLPRL----------- 153 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~------Gl~P~~g~~~~l~r~----------- 153 (733)
+.+..++|||||+++|.|.|+|+.|+++||++++++++.|+...+.. ++.+..|..+.+.+.
T Consensus 64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~ 142 (211)
T cd07019 64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 142 (211)
T ss_pred -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence 56788999999999999999999999999999999999997433210 000222222211111
Q ss_pred -----------------------------cCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHH
Q 004726 154 -----------------------------VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (733)
Q Consensus 154 -----------------------------~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~ 191 (733)
+.+. ..+-+..|..+++++|++.||||++...++..+
T Consensus 143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 143 LPPEAQLGLQLSIENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 1111 122245788999999999999999987666544
No 136
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.58 E-value=4.5e-15 Score=174.18 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=90.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCC--CC
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FK 695 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~--~~ 695 (733)
=+++||+||++.+++||+++++++| + +++|||.+|..++|||+ |||+++|.+|+|+++++++.+...++++ +.
T Consensus 493 d~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 567 (715)
T PRK11730 493 DCPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKD 567 (715)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccc
Confidence 3689999999999999999999999 6 89999999999999998 9999999999999999999999888775 34
Q ss_pred CCHHHHHHHHCCCCc--cccceeecCC
Q 004726 696 PSRFLEERATKGIPL--VRIIFHRFSN 720 (733)
Q Consensus 696 p~~~l~~~~~~g~~g--~g~gfy~y~~ 720 (733)
|++++++|+++|++| +|+|||+|++
T Consensus 568 ~~~~l~~~v~~G~~G~k~g~GfY~y~~ 594 (715)
T PRK11730 568 YRDAIDVLFEAKRFGQKNGKGFYRYEE 594 (715)
T ss_pred hhHHHHHHHHCCCCccccCCEeEeccc
Confidence 578999999999999 8999999973
No 137
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.57 E-value=1.1e-13 Score=144.77 Aligned_cols=184 Identities=18% Similarity=0.122 Sum_probs=135.6
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
||+|||+|.||.+|+..|+++|+ +|+++ |+++++.+... +.| +..+++. +
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~e 57 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNTE 57 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChHH
Confidence 69999999999999999999998 89999 99988765431 112 2223343 5
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~ 462 (733)
.+++||+||+|++ ++...+++.++.+.++++++|+|.+++++++.+.+..... +++..+|..|......+. ++.+.
T Consensus 58 ~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~~ 134 (266)
T PLN02688 58 VVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLGP 134 (266)
T ss_pred HHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeCC
Confidence 6789999999996 6667888888888888888888888899999888766543 788888888876665555 44577
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCC--------CCcchhhhhHHHHHHHH-HHHHcCCCHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVVVGNC--------TGFAVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI 522 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~--------pGfi~nRl~~~~~~Ea~-~l~~~Gv~~~dID~a~ 522 (733)
.++++..+.++++++.+|. ++++.+. .| -...+++.++.... .....|+++++.-.++
T Consensus 135 ~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g-~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 135 AATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSG-SGPAYIFLAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhc-CHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999999999 7776431 11 11122222222111 1445699999988887
No 138
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.57 E-value=5.8e-15 Score=172.85 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=89.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCC--C
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--K 695 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~--~ 695 (733)
-+++||.||++.++++||++++++| + +|++||.+|..++|||+ |||+++|.+|+|+.+++++.+...+++++ .
T Consensus 493 d~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~ 567 (714)
T TIGR02437 493 DCPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKD 567 (714)
T ss_pred CcccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccc
Confidence 3689999999999999999999999 5 79999999999999999 99999999999999999999988887753 3
Q ss_pred CCHHHHHHHHCCCCc--cccceeecC
Q 004726 696 PSRFLEERATKGIPL--VRIIFHRFS 719 (733)
Q Consensus 696 p~~~l~~~~~~g~~g--~g~gfy~y~ 719 (733)
|++++++|+++|++| +|+|||+|+
T Consensus 568 ~~~~l~~~v~~G~lG~K~g~GfY~y~ 593 (714)
T TIGR02437 568 GRDAIDALFEAKRLGQKNGKGFYAYE 593 (714)
T ss_pred hhHHHHHHHHCCCCcccCCCEEEecc
Confidence 578999999999999 899999996
No 139
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.55 E-value=7.3e-14 Score=140.34 Aligned_cols=187 Identities=19% Similarity=0.196 Sum_probs=132.5
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
..++||+||+|.||++|+.+|.++||+|++|||+.++.+.. .+.|. -...+..|.++
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga------------~v~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGA------------RVANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhch------------hhhCCHHHHHh
Confidence 35789999999999999999999999999999999887664 23331 11233337889
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCCC-------C
Q 004726 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM-------P 454 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~~-------~ 454 (733)
+||+||.+||+..+++..++.. +...++++.......||+.+. ++++.+... +..|.+.|..+ .
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence 9999999999999998888865 333344544332345555543 555554432 33333333222 2
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-C---cchhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~p-G---fi~nRl~~~~----~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+.+..+ .+++.++++.++++.+||+.+.++... | -+.|+++.+. +.|++.+.+. |+++..+-.++
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eil 241 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEIL 241 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445555 589999999999999999999997532 2 3567765432 4599998866 99999998888
No 140
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.55 E-value=7.8e-14 Score=151.99 Aligned_cols=171 Identities=20% Similarity=0.196 Sum_probs=122.8
Q ss_pred CcceEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 307 ~~~kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
.+++|+||| +|.||+++|..|.++|++|++||+++.. . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----------------------~------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----------------------A------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----------------------H------------HHHH
Confidence 457899998 9999999999999999999999986320 0 0 0245
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCCCCCCeeE--EecC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 461 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve--iv~~ 461 (733)
++||+||+|+| ......+++++.+ +++++||++++|+ .++..+.+... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP--~~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVP--IHLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCc--HHHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 78999999999 4456788899888 8999999988875 34556655433 3699999998886654433 4556
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcch---hhhhHH-HHHHHHHHHHcCCCHHHH
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAFFP-YSQSARLLVSLGVDVFRI 518 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pGfi~---nRl~~~-~~~Ea~~l~~~Gv~~~dI 518 (733)
+.+++++++.+.++++.+|.+++.++. ....++ +-+-+. .+.++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 667889999999999999999999852 222222 222111 123455555566665554
No 141
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.51 E-value=2.5e-13 Score=143.82 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=125.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.+||..|+++|++|++||+++++++...+ .| +..+++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence 58999999999999999999999999999999988765421 12 1223333 56789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCC---CCCCeeEE
Q 004726 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~---~~~~lvei 458 (733)
||+||.|+|++..++..+.. .+.+.++++++++ ++|+..+.. +.+.+. ...+|+.......+ ..+.++ +
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~-~ 135 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLL-L 135 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEE-E
Confidence 99999999977766655542 3566677888775 456655543 333332 22233332211111 122222 3
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC-----cchhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG-----fi~nRl~----~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
+.| .+++++++++++++.+|+.++++++ +| -++|.++ ...+.|++.+.+. |++++.+-.++
T Consensus 136 ~~g--g~~~~~~~~~p~l~~~g~~~~~~g~-~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 136 LAG--GTAEQVERATPILMAMGNELINAGG-PGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred EEC--CCHHHHHHHHHHHHHHcCCeEeeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333 2789999999999999999999986 33 2334432 3445799988866 89999987777
No 142
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.51 E-value=3e-14 Score=137.27 Aligned_cols=148 Identities=18% Similarity=0.149 Sum_probs=99.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
|+||+|||+|.||.+||.+|+++|++|++||+++++.++..+ . .....+++ +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence 579999999999999999999999999999999998877532 1 23445555 6788
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCHHHH---hcccCCCCcEEEEecCCCCC--------CC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLNIV---GEKTSSQDRIIGAHFFSPAH--------VM 453 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~~l---~~~~~~~~~~ig~h~~~p~~--------~~ 453 (733)
+||+||.|+|++.++ ++++.. +.+.++++++++. +||.+++.. ++.+... |.||.+.|- .+
T Consensus 57 ~~dvvi~~v~~~~~v-~~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDAV-EAVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHHH-HHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchhh-hhhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhhc----cceeeeeeeeccccccccc
Confidence 999999999966665 455555 7888889998864 555555533 3333211 345544332 23
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEE-EcC
Q 004726 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVV-VGN 488 (733)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~-v~d 488 (733)
.+.-++.| +++++++++++++.+|+++++ +|+
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence 44445555 689999999999999998884 364
No 143
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.50 E-value=6.9e-13 Score=144.21 Aligned_cols=176 Identities=18% Similarity=0.143 Sum_probs=123.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|+||++||..|.++|++|.+|+++++..+.... ...+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 37999999999999999999999999999998876443211 1112111 112333 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEEecCCCCC------------C
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------------V 452 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~--~~~~l~~~~~~~~~~ig~h~~~p~~------------~ 452 (733)
||+||+|+| +.....+++++.+ .++++++|++.+|+. .+..+........+|++.||+.... .
T Consensus 61 aDlVilavP--~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVP--VDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCC--HHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 999999999 5677899999987 478888887655542 2334444444567899999865431 2
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCCcchhhhh--HHHHHHHH
Q 004726 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAF--FPYSQSAR 506 (733)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~-d~pGfi~nRl~--~~~~~Ea~ 506 (733)
+...-+++++.++++.++.++++++.+|+.++.+. +....++..+. -.++.+++
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 33345788888999999999999999999999884 44444554442 23444444
No 144
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.49 E-value=1.4e-12 Score=136.47 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=135.0
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC---CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G---~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
|++|+|||+|.||.+++..|.++| ++|.++|+++++.++..+.+ | +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 457999999999999999999999 78999999998866542210 1 1223333 4
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~ 462 (733)
.+.+||+||+|+| +....++++++.+.+ +++|+|.+++++...+...+....+++.+||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 5789999999998 777788888887766 456778888899888887776567899999988876665555 55777
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCC--CCcc-h--h--hhhHHHHHHHHHH-HHcCCCHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVVVGNC--TGFA-V--N--RAFFPYSQSARLL-VSLGVDVFRIDSAI 522 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~--pGfi-~--n--Rl~~~~~~Ea~~l-~~~Gv~~~dID~a~ 522 (733)
.++++..+.+..+++.+|..+.+..+. .... . + -+++.++...... .+.|+++++...++
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999999999999999744443221 1111 1 1 1223344333333 34689988877666
No 145
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.49 E-value=1e-12 Score=136.91 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=125.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +..+++. +.
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e~ 60 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNEV 60 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHHH
Confidence 79999999999999999999885 699999999887654221 11 2223333 56
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER 463 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~~~ 463 (733)
+++||+||.||+ ++...++++++.+.++++++|+|...+++++.+.+.+....+++.+.|+.|...+..+..+ +++.
T Consensus 61 ~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~ 138 (272)
T PRK12491 61 ANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEM 138 (272)
T ss_pred HhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCC
Confidence 789999999999 6888888899988888889999999999999999988766689999999998888777665 5677
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
.+++..+.+..++..+|+.. ++.
T Consensus 139 ~~~~~~~~v~~lf~~~G~~~-~~~ 161 (272)
T PRK12491 139 VTEKDIKEVLNIFNIFGQTE-VVN 161 (272)
T ss_pred CCHHHHHHHHHHHHcCCCEE-EEc
Confidence 88999999999999999974 443
No 146
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.48 E-value=9.6e-13 Score=138.37 Aligned_cols=188 Identities=14% Similarity=0.151 Sum_probs=133.2
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC----CeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.+||+|||+|.||.+|+..|+++| ++|+++|++++ +++.... ..| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 358999999999999999999998 78999999764 4333211 001 2223333
Q ss_pred -cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-Eec
Q 004726 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVR 460 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~ 460 (733)
+.+++||+||.||| ++...+++.++.+.++++++|+|..++++++.+.+.......+++.||+.|......+. +++
T Consensus 60 ~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 55789999999999 66667778888888888888888888999998888776556799999976665544333 447
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Ccch--hhhhHHHHHHHHH--HHHcCCCHHHHHHHH
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAV--NRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~p-----Gfi~--nRl~~~~~~Ea~~--l~~~Gv~~~dID~a~ 522 (733)
++..+++..+.++++++.+|+..+ +.+.- |... ..+++ ++.|++. ....|+++++...++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~~~-~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAYIY-YVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 777889999999999999998554 32210 0000 12222 2334333 446699999888877
No 147
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.47 E-value=3.2e-13 Score=142.61 Aligned_cols=185 Identities=18% Similarity=0.114 Sum_probs=126.4
Q ss_pred EEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCCCEE
Q 004726 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 391 (733)
Q Consensus 313 VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV 391 (733)
|||+|.||.+||..|+++|++|++||+++++.+... +.| +..+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876542 112 2223344 568899999
Q ss_pred EEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCC--------CCeeEEecC
Q 004726 392 IEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV--------MPLLEIVRT 461 (733)
Q Consensus 392 I~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~--------~~lveiv~~ 461 (733)
|.|||.+..+...++ ..+.+.+++++++++ +||+.+.........-. -.|.+|.+.|.. +.+.-++.|
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~-~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg 134 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAA-AHGAVFMDAPVSGGVGGARAGTLTFMVGG 134 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH-HcCCcEEECCCCCCHHHHhhCcEEEEECC
Confidence 999996555544333 567777788888764 45666654333211100 014455444332 223333444
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCc---chhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d-~pGf---i~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~-~~~G 526 (733)
+++.+++++++++.+|+.++++++ ..|. ++|.++. ..+.|++.+.+. |++++++..++ .+.|
T Consensus 135 ---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 135 ---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred ---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 678999999999999999999987 3333 4455432 246799998876 89999999998 4444
No 148
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.46 E-value=4e-12 Score=133.45 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=109.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|. +...++.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGL------------VDEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCC------------CcccCCHHHHhc
Confidence 79999999999999999999996 7999999998876542 2221 111223333456
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC--CCCcEEEEecCCC-----C-C------CC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP-----A-H------VM 453 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~--~~~~~ig~h~~~p-----~-~------~~ 453 (733)
||+||.|+| +....+++.++.+ ++++++|++.+|+ ... +.+.+. .+.+|++.||+.+ | . .+
T Consensus 59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~-k~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGST-KAK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccc-hHH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 999999999 6666778888888 8889888765443 222 222211 2357999999743 1 1 23
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
..+.+++.+.++++.++.+.++++.+|..++.+.+
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 45667788788999999999999999999999853
No 149
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.46 E-value=1.2e-12 Score=135.68 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=117.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH--HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC--cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 383 (733)
.++|+|+|+|.||+++|+.+.+.|+.|.+++++.. .++.+ .+.|.++. .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence 46899999999999999999999998866665544 43332 22232221 0122 25
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEEecCCCCC------CCCe
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------VMPL 455 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~~~ig~h~~~p~~------~~~l 455 (733)
.+.++|+||.||| +....++++++.+.++++++|++.+|+. ++..+.+......+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 6788999999999 9999999999999999999999877763 3444444443322899999987762 2344
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+-+++++.++.+.++.+.++++.+|.+++.+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 66778888899999999999999999999884
No 150
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.46 E-value=5.4e-13 Score=148.38 Aligned_cols=188 Identities=13% Similarity=0.145 Sum_probs=126.0
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c--
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-- 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-- 383 (733)
.+.+|+|||+|.||.+||.+|+++|++|++|||++++.+...+.. ...|.. .+....++ +
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 345799999999999999999999999999999999887653210 000210 01122333 2
Q ss_pred -ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCC--------
Q 004726 384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAH-------- 451 (733)
Q Consensus 384 -~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~-------- 451 (733)
.++.+|+||.|||.+..+... +..+.+.+.++.|+++.+ +..+. .+.+.+.. .|+||...|.
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~V-i~gl~~~l~~G~iiID~s-T~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~ 141 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQT-IKALSEYMEPGDCIIDGG-NEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGAR 141 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHHH-HHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhc
Confidence 344599999999977776554 477888888888887544 44333 22222211 2555544332
Q ss_pred CCCeeEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCCC------cchhhhhH---HHHHHHHHHHHc--CCC
Q 004726 452 VMPLLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG------FAVNRAFF---PYSQSARLLVSL--GVD 514 (733)
Q Consensus 452 ~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~pG------fi~nRl~~---~~~~Ea~~l~~~--Gv~ 514 (733)
.++ .+++|. +++++++++++++.++.+ ++++++ +| .+.|-+.+ ..+.|++.+++. |++
T Consensus 142 ~G~--~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld 216 (493)
T PLN02350 142 NGP--SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLS 216 (493)
T ss_pred CCC--eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 233 244543 899999999999999954 788886 44 23344433 345699999865 899
Q ss_pred HHHHHHHH
Q 004726 515 VFRIDSAI 522 (733)
Q Consensus 515 ~~dID~a~ 522 (733)
++++-.++
T Consensus 217 ~~~l~~vf 224 (493)
T PLN02350 217 NEELAEVF 224 (493)
T ss_pred HHHHHHHH
Confidence 99999885
No 151
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.45 E-value=1.7e-12 Score=144.38 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=130.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc--
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-- 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-- 385 (733)
.+|+|||+|.||.+||.+|+++|++|++||+++++.+...+.. ...|. .+..++++ +.+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 4799999999999999999999999999999999987753310 01121 12233444 233
Q ss_pred -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCee------EE
Q 004726 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL------EI 458 (733)
Q Consensus 386 -~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lv------ei 458 (733)
+++|+||.+||... ..+.+++++.+.+.++.||++.+++.+...........+ .|+||...|..+... -+
T Consensus 64 l~~~d~Iil~v~~~~-~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~~l 140 (470)
T PTZ00142 64 LKKPRKVILLIKAGE-AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGPSL 140 (470)
T ss_pred CCCCCEEEEEeCChH-HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCCEE
Confidence 46899999998554 455667889999999999887666654443322211111 266665544332110 24
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCC-CC----cchhhhhHH---HHHHHHHHHH--cCCCHHHHHHHH
Q 004726 459 VRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TG----FAVNRAFFP---YSQSARLLVS--LGVDVFRIDSAI 522 (733)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~-pG----fi~nRl~~~---~~~Ea~~l~~--~Gv~~~dID~a~ 522 (733)
+.|. +++++++++++++.++.+ ..++++. .| .+.|-+.++ .+.|++.+++ .|++++++-.++
T Consensus 141 m~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 141 MPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred EEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 4443 799999999999999987 6777762 22 233545433 3569999986 489999998888
Q ss_pred Hhc
Q 004726 523 RSF 525 (733)
Q Consensus 523 ~~~ 525 (733)
..+
T Consensus 219 ~~w 221 (470)
T PTZ00142 219 NKW 221 (470)
T ss_pred HHH
Confidence 544
No 152
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.44 E-value=7.3e-13 Score=133.34 Aligned_cols=146 Identities=25% Similarity=0.271 Sum_probs=101.8
Q ss_pred CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 25 VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 25 ~Na-l~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
.|+ ++..++.+|.++|+.++.|+++++|||+. +|.|+++.... ...+.+ ..+.. +|||||
T Consensus 18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~-------------~l~~~l-~~~~~-~KpViA 78 (214)
T cd07022 18 LEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF-------------ELADAI-RAARA-GKPIVA 78 (214)
T ss_pred ccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH-------------HHHHHH-HHHhc-CCCEEE
Confidence 354 45789999999999999999999999974 56666654321 111222 22333 599999
Q ss_pred EeCCcccchhhHHhhhcCEEEEeCCceEeCcccc------------CCCCCCh---------h-----hh----hhh---
Q 004726 104 AVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF---------G-----GT----QRL--- 150 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~P~~---------g-----~~----~~l--- 150 (733)
+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+.. + .+ ..+
T Consensus 79 ~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~ 158 (214)
T cd07022 79 FVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAE 158 (214)
T ss_pred EECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998765442 3332110 0 00 000
Q ss_pred --------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHH
Q 004726 151 --------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (733)
Q Consensus 151 --------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~ 191 (733)
.|-+.....++++ |..+++++|++.||||++...+++..
T Consensus 159 l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 159 VDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 1222333334444 99999999999999999987666543
No 153
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.43 E-value=5.3e-13 Score=152.66 Aligned_cols=167 Identities=22% Similarity=0.262 Sum_probs=131.7
Q ss_pred cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC---CCcccCCCCchhhhhccCCCcccccchh
Q 004726 12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 12 ~~~i~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
++.|++|+++.+ + .|..+....+.+.+.++.+..|++||+|||+-. |..||+ ..
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----e~---------------- 366 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----EI---------------- 366 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----HH----------------
Confidence 678999999887 2 354444456788999999999999999999733 333442 11
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceE------eCcc------ccCCCCCChhhhhhhcc-
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR- 152 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f------~~pe------~~~Gl~P~~g~~~~l~r- 152 (733)
..+.+ ..+...+|||||.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.|....+..+..
T Consensus 367 i~~~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 367 IRREL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 11233 3466788999999999999999999999999999999987 5553 58999998777766654
Q ss_pred ---------------------------ccCHHH-----HHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHH
Q 004726 153 ---------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (733)
Q Consensus 153 ---------------------------~~G~~~-----a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~ 200 (733)
.|+..+ +.+.+.+|+.++++||+++||||++- .+ ++|.+.|.++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~l 521 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKL 521 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHH
Confidence 566666 77889999999999999999999994 34 6778888888
Q ss_pred Hcc
Q 004726 201 AAR 203 (733)
Q Consensus 201 a~~ 203 (733)
+..
T Consensus 522 a~~ 524 (584)
T TIGR00705 522 AHC 524 (584)
T ss_pred cCC
Confidence 887
No 154
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.42 E-value=1e-12 Score=126.37 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCC
Q 004726 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (733)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G 107 (733)
+++.++++|.+.|+.++.|+++++|+|.. .|.|+|+... ..+. ..|..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence 66688999999999999999999999975 4677765432 2344 5677889999999999
Q ss_pred cccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhh-------------hhh------ccccCHHHHHHHHHcCCC
Q 004726 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRL------PRLVGLSKAIEMMLLSKS 168 (733)
Q Consensus 108 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~-------------~~l------~r~~G~~~a~~l~ltG~~ 168 (733)
.|.++|+.|+++||.|++.+++.|++..+..+.....+-. ..+ .|.+......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988876653321000 111 122344456778889999
Q ss_pred CCHHHHHHcCCccEE
Q 004726 169 ITSEEGWKLGLIDAV 183 (733)
Q Consensus 169 i~a~eA~~~Glv~~v 183 (733)
++|+||++.||||++
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 155
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=4.1e-12 Score=141.15 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=118.4
Q ss_pred eEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 310 kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
||+||| +|.||.++|..|.++|++|+++|++++..+.... +.| +..+++. +.+.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~~ 58 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAKD 58 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhcc
Confidence 799997 7999999999999999999999999877543211 111 2223343 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCC----CCCCeeEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA----HVMPLLEIVRT 461 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~----~~~~lveiv~~ 461 (733)
||+||.|+| +.....+++++.+.++++++|++.+|+ .+...+.+......+|++.||+..| ..+..+.++++
T Consensus 59 aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~ 136 (437)
T PRK08655 59 ADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPT 136 (437)
T ss_pred CCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecC
Confidence 999999999 566678889999999999998877764 4445555555545689999986433 34556778888
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+.++++.++.+.++++.+|.+++.+.
T Consensus 137 ~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 137 EKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 88899999999999999999998874
No 156
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.41 E-value=2.7e-12 Score=135.37 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=122.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
||+|||+|.||.+||..|.++|++|++||+++. .++. .+.|. ....+..+.+++||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~------------~~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA------------VSVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC------------eecCCHHHHHhcCC
Confidence 699999999999999999999999999999874 2221 12221 11122225678999
Q ss_pred EEEEeccCChHHHHHHHHH--HHHhCCCCeEEEecCCCCCHHH---HhcccC-CCCcEEEEecCCCC----CCCCeeEEe
Q 004726 390 MVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFSPA----HVMPLLEIV 459 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~~---l~~~~~-~~~~~ig~h~~~p~----~~~~lveiv 459 (733)
+||.|||++..++..++.. +.+.+.++.+++. +||..+.. +++.+. +...|+. +|.... ..+.+.-++
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV 135 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence 9999999887776666542 5555678887764 55555553 333332 3334555 233221 122222233
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----chhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf-----i~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.| +++++++++++++.+|+.++++++. |- ++|.++. ..+.|++.+.+. |++++.+-.++
T Consensus 136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 136 GG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred cC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 7999999999999999999999873 52 3344432 235699988866 89999987777
No 157
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.41 E-value=9e-12 Score=137.74 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=127.1
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH--------HHHHHHHhHhcCCCCHHHHHHHhhcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG 378 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~--------i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (733)
.++||+|||+|.||.++|.+|+++|++|++||+++++++..... +...+.+.++ .+++.+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~------------~g~l~~ 69 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE------------GGYLRA 69 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhh------------cCceee
Confidence 35789999999999999999999999999999999988763211 1111111111 134444
Q ss_pred ccCccccCCCCEEEEeccCC--------hHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhcccCC-------C--
Q 004726 379 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-------Q-- 438 (733)
Q Consensus 379 ~~~~~~l~~aDlVI~avpe~--------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-------~-- 438 (733)
+++ +++||+||.|||.+ ......+.+.+.+.++++++|+. .||.++. .+...+.. |
T Consensus 70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~-~STv~pgtt~~~~~~l~~~~~~~~~~~~ 145 (415)
T PRK11064 70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL-ESTSPVGATEQMAEWLAEARPDLTFPQQ 145 (415)
T ss_pred ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE-eCCCCCCHHHHHHHHHHHhccCCccccc
Confidence 443 45899999999964 35566667889999999998764 4444433 22211110 0
Q ss_pred ----CcEEEEecCCCCCCC--Cee-------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-----CCcchhhhh--
Q 004726 439 ----DRIIGAHFFSPAHVM--PLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAVNRAF-- 498 (733)
Q Consensus 439 ----~~~ig~h~~~p~~~~--~lv-------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-----pGfi~nRl~-- 498 (733)
..|.-. ++|-... ..+ -++.| .+++..+++.++++.+++.++++++. ..++.|-+.
T Consensus 146 ~g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~ 221 (415)
T PRK11064 146 AGEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDV 221 (415)
T ss_pred ccCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHH
Confidence 011111 2331111 111 24444 37899999999999999887777641 123445432
Q ss_pred -HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 499 -FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 499 -~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+++||+..+.+. |+++.++-.++
T Consensus 222 ~ia~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 222 NIAFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 4778999988877 99999998887
No 158
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.39 E-value=2.3e-12 Score=129.36 Aligned_cols=153 Identities=22% Similarity=0.282 Sum_probs=110.6
Q ss_pred EEEEEeCCCCCCCC---CHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH
Q 004726 15 VAIITLINPPVNAL---AIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (733)
Q Consensus 15 i~~i~l~~p~~Nal---~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (733)
|++|.++-+ + .+.++.+|.++|+.+++|+++++|||++ +|.|+|+.... ...+.+
T Consensus 2 v~vi~i~g~----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i- 59 (208)
T cd07023 2 IAVIDIEGT----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI- 59 (208)
T ss_pred EEEEEEEEE----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-
Confidence 567777654 3 3778999999999999999999999987 58899886531 122344
Q ss_pred HHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccc------------cCCCCCChhhh------------
Q 004726 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGT------------ 147 (733)
Q Consensus 92 ~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~P~~g~~------------ 147 (733)
+.+..++|||||+++|.|.|+|+.|+++||++++++++.|+...+ ++|+-+..-.+
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 557888999999999999999999999999999999999875433 24433321100
Q ss_pred ------hhh-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHH
Q 004726 148 ------QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190 (733)
Q Consensus 148 ------~~l-----------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~ 190 (733)
..+ .|-+.... .+-++.|..+++++|++.||||++...++..
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 000 11111121 2235678999999999999999998655544
No 159
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.39 E-value=1.1e-11 Score=131.37 Aligned_cols=187 Identities=9% Similarity=0.027 Sum_probs=122.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a 388 (733)
||+|||+|.||.+||..|+++|++|++||+++++++...+ .+.....+ ..+. +.+.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~~~s----------~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTGVAN----------LRELSQRLSAP 60 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcccCC----------HHHHHhhcCCC
Confidence 7999999999999999999999999999999998776432 12110000 0011 345679
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhccc-CCCCcEEEEecCCCCC--CCCeeEEecCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT-SSQDRIIGAHFFSPAH--VMPLLEIVRTER 463 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~-~~~~~~ig~h~~~p~~--~~~lveiv~~~~ 463 (733)
|+||.|+|.+ ..+.+++++.+.++++.+|++.+++.+.+ ...+.+ ....+|+..+....+. ...+.-.+.|
T Consensus 61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG-- 136 (298)
T TIGR00872 61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG-- 136 (298)
T ss_pred CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC--
Confidence 9999999955 66777788988898888887655554333 222222 2222344443322111 0012222333
Q ss_pred CCHHHHHHHHHHHHHcCC---eeEEEcCCC-C----cchhhhhHH---HHHHHHHHHHc-C--CCHHHHHHHH
Q 004726 464 TSAQVILDLMTVGKIIKK---VPVVVGNCT-G----FAVNRAFFP---YSQSARLLVSL-G--VDVFRIDSAI 522 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~---~~v~v~d~p-G----fi~nRl~~~---~~~Ea~~l~~~-G--v~~~dID~a~ 522 (733)
+++.++.++++++.++. ..+++++.. | .+.|-+... .+.|++.+++. | ++++++-.+|
T Consensus 137 -~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 137 -DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred -CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 79999999999999996 467887632 1 122444333 34589999977 4 5999999998
No 160
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.38 E-value=4.2e-12 Score=134.76 Aligned_cols=182 Identities=17% Similarity=0.111 Sum_probs=120.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC--
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 386 (733)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.| ...+.+. +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence 699999999999999999999999999999998766531 112 1222333 3333
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEEecCCCCCCCCee------E
Q 004726 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPLL------E 457 (733)
Q Consensus 387 -~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~~~ig~h~~~p~~~~~lv------e 457 (733)
++|+||.|+|.+..+ +.++..+.+.++++.+++..+++.+.+ ++.+.+.. .|.+|.+.|..+... -
T Consensus 58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~ 132 (299)
T PRK12490 58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC 132 (299)
T ss_pred CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence 379999999966444 455577777788888776543333322 33333321 134555433322111 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCCCc-----chhhh-hH---HHHHHHHHHHHc-C--CCHHHHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTGF-----AVNRA-FF---PYSQSARLLVSL-G--VDVFRIDSAI 522 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~pGf-----i~nRl-~~---~~~~Ea~~l~~~-G--v~~~dID~a~ 522 (733)
++.+. +++++++++++++.+|. ..+++++ +|- ++|++ .. ..+.|++.+.++ | ++++++-.++
T Consensus 133 ~~~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 133 LMVGG--DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred EEecC--CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 33222 78999999999999997 6888886 441 23333 32 334699999986 7 8999988888
Q ss_pred H
Q 004726 523 R 523 (733)
Q Consensus 523 ~ 523 (733)
.
T Consensus 210 ~ 210 (299)
T PRK12490 210 R 210 (299)
T ss_pred c
Confidence 4
No 161
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.38 E-value=4.8e-12 Score=134.48 Aligned_cols=182 Identities=16% Similarity=0.120 Sum_probs=121.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC--
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-- 386 (733)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.| +...++. +.++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence 799999999999999999999999999999998876642 122 1222233 2233
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEEecCCCCCCCCe------eE
Q 004726 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL------LE 457 (733)
Q Consensus 387 -~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~~~ig~h~~~p~~~~~l------ve 457 (733)
++|+||.++|.+..+ ..++..+...++++.++++.+++.+.. .+.+.+.. .|.+|.+.|..+.. ..
T Consensus 58 ~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCCe
Confidence 479999999965444 455577777888888776544443322 23333221 14555443322211 12
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCCCc-----chh-hhhHH---HHHHHHHHHH---cCCCHHHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCTGF-----AVN-RAFFP---YSQSARLLVS---LGVDVFRIDSA 521 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~----~~v~v~d~pGf-----i~n-Rl~~~---~~~Ea~~l~~---~Gv~~~dID~a 521 (733)
++.+ .+++++++++++++.+++ ..+++++ +|- ++| -+... .+.|++.+.+ .|++++++-.+
T Consensus 133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~-~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGP-VGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEec--CCHHHHHHHHHHHHHHcccccCCeEeECC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3333 379999999999999999 7888887 342 223 33333 2458999886 46899999999
Q ss_pred HH
Q 004726 522 IR 523 (733)
Q Consensus 522 ~~ 523 (733)
+.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 84
No 162
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.38 E-value=7e-12 Score=133.73 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=113.9
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
.+++|+|||+|.||.++|..|.+.|+ +|++||+++++++.+. +.|.. ....++. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCC-----------ceecCCHHH
Confidence 35789999999999999999999995 8999999998766542 12211 0112233 5
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEEecCCCCCC--------
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-------- 452 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~~~ig~h~~~p~~~-------- 452 (733)
.+++||+||+|+| ......++.++.+.++++++|++.+| .... .+........++++.||+.+...
T Consensus 63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~ 139 (307)
T PRK07502 63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA 139 (307)
T ss_pred HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence 6789999999999 55567788888888888888765444 3322 33333334458999999875432
Q ss_pred ----CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 453 ----MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 453 ----~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+..+.+++...++++.++.+.++++.+|..++++.
T Consensus 140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345667777889999999999999999998874
No 163
>PLN02256 arogenate dehydrogenase
Probab=99.38 E-value=7.6e-12 Score=132.09 Aligned_cols=153 Identities=11% Similarity=0.022 Sum_probs=111.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc-
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l- 385 (733)
.++|+|||+|.||+++|..|.+.|++|++||+++.. +.+. +.| +...++. +.+
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence 357999999999999999999999999999998632 2110 111 1122333 333
Q ss_pred CCCCEEEEeccCChHHHHHHHHHH-HHhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCCCCC------Cee
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVM------PLL 456 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~~~~------~lv 456 (733)
.++|+||.|+| +....+++.++ ...++++++|++.+|+ .++..+.+.+....+|+++||+.++... ..+
T Consensus 91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 46999999999 66777888888 5667889999887774 4556666665555579999998877643 111
Q ss_pred EEecC----CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 457 EIVRT----ERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 457 eiv~~----~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
-+++. +.++++.++.+.++++.+|.+++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 11221 56788999999999999999999984
No 164
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.36 E-value=6.3e-12 Score=139.51 Aligned_cols=201 Identities=19% Similarity=0.154 Sum_probs=130.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH----HHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||+|||+|.||.++|..|+++|++|++||+++++++...+.. +..++.++.+. ...+++.+++++ ++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~~ 73 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYEDA 73 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHHH
Confidence 799999999999999999999999999999999877643210 00000000000 001345666666 46
Q ss_pred cCCCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCCCCCHH---HHh-cccCC-------CCcEEEEe
Q 004726 385 FKDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS-------QDRIIGAH 445 (733)
Q Consensus 385 l~~aDlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~-~~~~~-------~~~~ig~h 445 (733)
+++||+||.|||.+. .....+.+.+.+.++++++|+. +||+++. ++. ..... ..-.+..+
T Consensus 74 ~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~ 152 (411)
T TIGR03026 74 IRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYN 152 (411)
T ss_pred HhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEEC
Confidence 899999999999764 2455666788888888887764 4555443 222 11111 11123444
Q ss_pred cCCCCCCCCe-------eEEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-----Ccchhhh---hHHHHHHHHHHH
Q 004726 446 FFSPAHVMPL-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRA---FFPYSQSARLLV 509 (733)
Q Consensus 446 ~~~p~~~~~l-------veiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~p-----Gfi~nRl---~~~~~~Ea~~l~ 509 (733)
|-.. ..+.. ..++.| .+++..+.++++++.++ +.++++++.. .++.|-+ ..+++||+..+.
T Consensus 153 Pe~~-~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 153 PEFL-REGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred CCcC-CCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4111 11111 124455 48999999999999998 5777776522 2344533 256789999988
Q ss_pred Hc-CCCHHHHHHHH
Q 004726 510 SL-GVDVFRIDSAI 522 (733)
Q Consensus 510 ~~-Gv~~~dID~a~ 522 (733)
+. |+++.++-.++
T Consensus 230 ~~~GiD~~~v~~~~ 243 (411)
T TIGR03026 230 EALGIDVYEVIEAA 243 (411)
T ss_pred HHhCCCHHHHHHHh
Confidence 77 99999998888
No 165
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.33 E-value=5.1e-12 Score=121.35 Aligned_cols=129 Identities=17% Similarity=0.265 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCCccc
Q 004726 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (733)
Q Consensus 31 ~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~ 110 (733)
.+.+.+.+.++.+..+..+ .+.|.+.|+...+ ...++ +.|..+|+|||+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~----------------------~~~i~-~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA----------------------GLAIY-NALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH----------------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence 4677888889988876443 3444444432111 12455 6688899999999999999
Q ss_pred chhhHHhhhcCEEEEeCCceEeCccccCCCCCChh---------------hhhhhccccC--HHHHHHHHHcCCCCCHHH
Q 004726 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE 173 (733)
Q Consensus 111 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g---------------~~~~l~r~~G--~~~a~~l~ltG~~i~a~e 173 (733)
|+|+.++++||+|+++++++|+++....+..+... ....+.+..| .....+++.++..++|+|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 99999999999999999999999777666544322 1233677788 677788888888999999
Q ss_pred HHHcCCccEE
Q 004726 174 GWKLGLIDAV 183 (733)
Q Consensus 174 A~~~Glv~~v 183 (733)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999985
No 166
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.32 E-value=1.8e-11 Score=122.48 Aligned_cols=154 Identities=25% Similarity=0.309 Sum_probs=108.5
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 15 i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
|++|+++.+ ++ ...++|.++|+.+.+|+++++|||+.. |.|+++... ..+. +.|
T Consensus 2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i 55 (207)
T TIGR00706 2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL 55 (207)
T ss_pred EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence 566776654 21 236789999999999999999999863 777776532 2333 456
Q ss_pred hcCC--CcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcccc------------CCCCCC------------h--hh
Q 004726 95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG------------F--GG 146 (733)
Q Consensus 95 ~~~~--kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~P~------------~--g~ 146 (733)
..++ |||||.++|.|.|+|+.|+++||.+++++++.++...+. +|+-+. . ..
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 6666 999999999999999999999999999999988764442 333210 0 00
Q ss_pred h----hhh-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHH
Q 004726 147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (733)
Q Consensus 147 ~----~~l-----------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (733)
+ ..+ .|-+......+ +..|+.+++++|++.||||++...+++.+...+
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 001 12223233333 467899999999999999999987776655443
No 167
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.32 E-value=2e-11 Score=135.85 Aligned_cols=192 Identities=15% Similarity=0.123 Sum_probs=125.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc----ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l 385 (733)
+|+|||+|.||.+||.+|+++|++|++||+++++.+...+. ...|. .+...+++ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999988765321 00010 01112222 235
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCe------eEEe
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL------LEIV 459 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l------veiv 459 (733)
+++|+||.|||.+..+ .+++.++.+.++++.||++.+++.+...........+ .|.||...|..+.. .-++
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~gi~fvdapVsGG~~gA~~G~~im 138 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--KGILFVGSGVSGGEEGARKGPSIM 138 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--cCCEEEcCCCCCCHHHHhcCCcCC
Confidence 6799999999965554 5566888888999998877665554432222111111 14555444432211 1233
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCee------EEEcCCC-C----cchhhhhHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 004726 460 RTERTSAQVILDLMTVGKIIKKVP------VVVGNCT-G----FAVNRAFFP---YSQSARLLVS--LGVDVFRIDSAIR 523 (733)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~------v~v~d~p-G----fi~nRl~~~---~~~Ea~~l~~--~Gv~~~dID~a~~ 523 (733)
.| .++++++.++++++.++.++ .++++.. | .+.|-+.++ .+.|++.++. .|++++++-.++.
T Consensus 139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 33 37999999999999999873 6777631 2 233545443 3469999874 5899999988884
Q ss_pred hc
Q 004726 524 SF 525 (733)
Q Consensus 524 ~~ 525 (733)
.+
T Consensus 217 ~w 218 (467)
T TIGR00873 217 EW 218 (467)
T ss_pred Hh
Confidence 44
No 168
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.30 E-value=9.4e-11 Score=125.53 Aligned_cols=205 Identities=16% Similarity=0.070 Sum_probs=133.5
Q ss_pred cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCCCEEEEeccCC
Q 004726 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (733)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVI~avpe~ 398 (733)
|.+||..|+++|++|++||++++.++... ++...+.| +..+++. +.+++||+||+|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999998654311 11112222 3434444 6678999999999955
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH----hcccCCCCcEEEEecCCCCCC----CCeeEEecCC------CC
Q 004726 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------RT 464 (733)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l----~~~~~~~~~~ig~h~~~p~~~----~~lveiv~~~------~t 464 (733)
. ..+.++..+.+.++++++|+ ++|+.++... .+.+..+.+.+|.||++|... ...++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 46677788988899998876 4555555533 234443445667877766542 2224455543 23
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcCCCCcc---hhhhhHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCccHHHHH
Q 004726 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQLL 535 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v~d~pGfi---~nRl~~~~----~~Ea~~l~~~-Gv~~~dID~a~-~~~G~p~Gpf~~~ 535 (733)
+++.+++++++++.+|+++++++..-|-. +|.++.+. ..|++.+.+. |.+|.+.-.-+ ... -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 89999999999999999998887432322 24444332 3588888866 67777655444 221 13556666
Q ss_pred HhhchHHHHHHH
Q 004726 536 DLAGYGVAAATS 547 (733)
Q Consensus 536 D~~Gld~~~~~~ 547 (733)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 667777655543
No 169
>PLN02858 fructose-bisphosphate aldolase
Probab=99.30 E-value=2.4e-11 Score=150.79 Aligned_cols=188 Identities=15% Similarity=0.067 Sum_probs=131.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.||.+||.+|+++|++|++||+++++.+... +.| ....++. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELG-------------GHRCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhc
Confidence 5799999999999999999999999999999998877642 222 1223344 67789
Q ss_pred CCEEEEeccCChHHHHHHH--HHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEE--EecCCCCCC--------CCe
Q 004726 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIG--AHFFSPAHV--------MPL 455 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig--~h~~~p~~~--------~~l 455 (733)
||+||.|+|++..++..++ ..+.+.+.++.+++. +||+.+....+....- .-.| .+|.+.|.. +.+
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l-~~~g~~~~~lDaPVsGg~~~A~~G~L 138 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKL-TERKEQIFLVDAYVSKGMSDLLNGKL 138 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHH-HhcCCceEEEEccCcCCHHHHhcCCe
Confidence 9999999998887776665 346677788887754 5666665433322110 0113 455444432 233
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCC-----cchhhhhH----HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-R 523 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~pG-----fi~nRl~~----~~~~Ea~~l~~~-Gv~~~dID~a~-~ 523 (733)
.-++.| +++++++++++++.+|+.++++ ++ +| -++|.++. ..+.||+.+.+. |++++.+-.++ .
T Consensus 139 ~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~-~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~ 214 (1378)
T PLN02858 139 MIIASG---RSDAITRAQPFLSAMCQKLYTFEGE-IGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISN 214 (1378)
T ss_pred EEEEcC---CHHHHHHHHHHHHHhcCceEEecCC-CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 434444 7899999999999999988875 65 33 23455433 335699998866 99999999888 5
Q ss_pred hcC
Q 004726 524 SFG 526 (733)
Q Consensus 524 ~~G 526 (733)
+.|
T Consensus 215 s~g 217 (1378)
T PLN02858 215 AAG 217 (1378)
T ss_pred CCc
Confidence 544
No 170
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=1.2e-10 Score=121.60 Aligned_cols=198 Identities=20% Similarity=0.217 Sum_probs=134.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH---H-----HHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT---I-----EANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~---i-----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
.+|+|||+|.+|.++|..++++|++|+++|+|+.+++..... + ...+...++ .++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence 689999999999999999999999999999999998875321 0 111222222 25688899
Q ss_pred CccccCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHhcc-------cCCCCcEEE
Q 004726 381 DYSEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEK-------TSSQDRIIG 443 (733)
Q Consensus 381 ~~~~l~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~-------~~~~~~~ig 443 (733)
+.+.++.||++|.|||. |+.......+.|.+.++++.+++.-+++.|-+ ++..- +..+..|.-
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999984 66667777788999999999887655544432 22211 222223322
Q ss_pred EecCCCCCCCC---eeE------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Ccchh--h-hhHHHHHHHH
Q 004726 444 AHFFSPAHVMP---LLE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN--R-AFFPYSQSAR 506 (733)
Q Consensus 444 ~h~~~p~~~~~---lve------iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~p-----Gfi~n--R-l~~~~~~Ea~ 506 (733)
.| .|-+.+| +.| ++.| .+++..+.+..|++.+-+..+.+.+.. ...-| | +..++.||..
T Consensus 158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22 3333332 223 3333 389999999999999877766554422 12223 2 2468899966
Q ss_pred HHH-HcCCCHHHHHHHH
Q 004726 507 LLV-SLGVDVFRIDSAI 522 (733)
Q Consensus 507 ~l~-~~Gv~~~dID~a~ 522 (733)
.+. +.|++..++-.+.
T Consensus 234 li~~~~GIdvwevIeaA 250 (436)
T COG0677 234 LICNAMGIDVWEVIEAA 250 (436)
T ss_pred HHHHHhCCcHHHHHHHh
Confidence 655 5599988877666
No 171
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.30 E-value=2.8e-11 Score=130.23 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=104.0
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHC-CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+ |.||+++|+.|.+. |++|+++|++.+. .++. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 48999999 99999999999964 8999999985211 1111 457
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHh---CCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCCCC-----Ce
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PL 455 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~~~-----~l 455 (733)
++||+||.|+| +....++++++.++ ++++++|++.+|+.. +..+ .....+|+|.||+..+... ..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 88888999999876 689999988777642 2222 2233479999998877532 33
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+-+++. ..++.++.+.++++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 335554 345567899999999999999884
No 172
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.28 E-value=2.5e-11 Score=132.54 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=119.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHH----HHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE----ANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~----~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||+|||+|.||.++|..++. ||+|++||+++++++...+.+. ..+++++.. ...++..+++. ++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhh
Confidence 79999999999999988875 9999999999999888654321 111111111 11244445554 56
Q ss_pred cCCCCEEEEeccCChH---------HHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCC-CCcEEEEecCCCCCCCC
Q 004726 385 FKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS-QDRIIGAHFFSPAHVMP 454 (733)
Q Consensus 385 l~~aDlVI~avpe~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~-~~~~ig~h~~~p~~~~~ 454 (733)
+++||+||+|||++.+ ...++++.+.. ++++.+++ ..||+++....+.... .+. ++.| +|....+
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~~~--~v~~-~PE~l~~ 145 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYRTE--NIIF-SPEFLRE 145 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhhcC--cEEE-CcccccC
Confidence 7999999999998743 33455677776 57787765 3555555433322211 111 2222 3332221
Q ss_pred ee---------EEecCCCCCHHHHHHHHHHHHH--cCCeeE-EEcC-----CCCcchhhhh---HHHHHHHHHHHHc-CC
Q 004726 455 LL---------EIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGN-----CTGFAVNRAF---FPYSQSARLLVSL-GV 513 (733)
Q Consensus 455 lv---------eiv~~~~t~~e~~~~~~~l~~~--lG~~~v-~v~d-----~pGfi~nRl~---~~~~~Ea~~l~~~-Gv 513 (733)
.- -++.|. +++..+.+.+++.. ++..+. ++++ ...++.|-+. .+++||+..+.+. |+
T Consensus 146 G~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~Gi 223 (388)
T PRK15057 146 GKALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGL 223 (388)
T ss_pred CcccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 11 133332 34556777777754 554333 4543 2234445442 4788999888876 99
Q ss_pred CHHHHHHHH
Q 004726 514 DVFRIDSAI 522 (733)
Q Consensus 514 ~~~dID~a~ 522 (733)
++.++-.++
T Consensus 224 D~~eV~~a~ 232 (388)
T PRK15057 224 NTRQIIEGV 232 (388)
T ss_pred CHHHHHHHh
Confidence 999999888
No 173
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.27 E-value=3.1e-11 Score=133.41 Aligned_cols=200 Identities=18% Similarity=0.147 Sum_probs=124.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.||+|||+|.||.++|.+|++ |++|++||+++++++...+..... .+. ..++... .+++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~----~e~---~~~~l~~-~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVN----LET---TEEELRE-ARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCC----CCC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence 479999999999999999887 699999999999988753211000 000 0111111 2456777777788999
Q ss_pred CEEEEeccCCh--------HHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc----ccCC------CCcEEEEecCCCC
Q 004726 389 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGE----KTSS------QDRIIGAHFFSPA 450 (733)
Q Consensus 389 DlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~----~~~~------~~~~ig~h~~~p~ 450 (733)
|++|.|||.+. .......+.+.+.++++.+|+. .||+++....+ .+.. ...|.-.| +|.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE 154 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPE 154 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCC
Confidence 99999999652 2223334578888888887764 44444432221 1111 11222222 222
Q ss_pred CCCC---------eeEEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcC-----CCCcchhhhh---HHHHHHHHHHHHc-
Q 004726 451 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-----CTGFAVNRAF---FPYSQSARLLVSL- 511 (733)
Q Consensus 451 ~~~~---------lveiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d-----~pGfi~nRl~---~~~~~Ea~~l~~~- 511 (733)
...+ +--++.|. +++..+.+.++++.+. ..++++.+ ...++.|-+. .+++||+..+.+.
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~ 232 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL 232 (425)
T ss_pred cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 11145553 5788899999999986 34555544 1123334332 5778999988877
Q ss_pred CCCHHHHHHHH
Q 004726 512 GVDVFRIDSAI 522 (733)
Q Consensus 512 Gv~~~dID~a~ 522 (733)
|+++.++-.++
T Consensus 233 GiD~~~v~~a~ 243 (425)
T PRK15182 233 NIDTEAVLRAA 243 (425)
T ss_pred CcCHHHHHHHh
Confidence 99999998887
No 174
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=6.5e-11 Score=124.34 Aligned_cols=198 Identities=18% Similarity=0.260 Sum_probs=137.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH----HHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+||+|||+|..|...+.+|+..||+|+++|+++++++...+.. +..|+.+++++..+ +|+.+|+|+ +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 3799999999999999999999999999999999999876542 44566666654332 579999999 5
Q ss_pred ccCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcc---cC--CCCc-E-EEEe---
Q 004726 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TS--SQDR-I-IGAH--- 445 (733)
Q Consensus 384 ~l~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~--~~~~-~-ig~h--- 445 (733)
+++++|++|+|||. |......+.+++.++++..++|+ +-||+|+...... +. .+.+ | +...
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 79999999999975 55677788888999988876654 5677776532221 11 1111 1 1111
Q ss_pred ---------cCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcC-----CCCcchhhhhH---HHHHHHH
Q 004726 446 ---------FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGN-----CTGFAVNRAFF---PYSQSAR 506 (733)
Q Consensus 446 ---------~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d-----~pGfi~nRl~~---~~~~Ea~ 506 (733)
|++|..+ ++... ++.+.+.+.++++.+ ...|++..+ .-.+..|-++. +++||..
T Consensus 152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2444433 44432 344666677777654 455665533 22456676653 6889988
Q ss_pred HHHHc-CCCHHHHHHHH
Q 004726 507 LLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 507 ~l~~~-Gv~~~dID~a~ 522 (733)
.+.+. |++..+|-..+
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 88877 99999988876
No 175
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.26 E-value=6.5e-11 Score=120.84 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=126.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC----CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (733)
+||+|||+|+||.+|+..|.++| .+|++.++++++.+...++ ++... +++. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~~ 58 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQE 58 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHHH
Confidence 58999999999999999999999 5899999999987643221 12222 3333 6
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEec-CC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-TE 462 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~-~~ 462 (733)
.+.++|+||+||. |....+++.++.. ..++.+|+|...+++++.+...+. ..+++.+.|+.|...+..+..+. +.
T Consensus 59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 7888999999997 8888899999988 778889999999999999999988 77899999999998887777665 57
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEE
Q 004726 463 RTSAQVILDLMTVGKIIKKVPVV 485 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~ 485 (733)
..+++..+.+.++++.+|+...+
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v 157 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEV 157 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEe
Confidence 78999999999999999987655
No 176
>PLN02858 fructose-bisphosphate aldolase
Probab=99.25 E-value=4.5e-11 Score=148.47 Aligned_cols=190 Identities=19% Similarity=0.189 Sum_probs=130.2
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
.+++|+|||+|.||.+||.+|+++|++|++||+++++.+... +.| ... .++. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G------------a~~-~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAG------------GLA-GNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC------------Cee-cCCHHHHH
Confidence 357899999999999999999999999999999998876532 122 111 2333 667
Q ss_pred CCCCEEEEeccCChHHHHHHHH--HHHHhCCCCeEEEecCCCCCHHHHh---cccCCCCcEEEEecCCCCCCC-------
Q 004726 386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLNIVG---EKTSSQDRIIGAHFFSPAHVM------- 453 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~~l~---~~~~~~~~~ig~h~~~p~~~~------- 453 (733)
++||+||.|||++.+++..++. .+.+.++++.+++. +||.++.... +.+.. .-.|.+|.+.|..+
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999987777666653 35566778887764 5565555333 32221 01255665544222
Q ss_pred -CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC-----cchhhhh----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 454 -PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 454 -~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG-----fi~nRl~----~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+.-++.| +++.+++++++++.+|+..++++..+| -++|.++ .+.+.|++.+.+. |++++.+-.++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 23333344 688999999999999998887654345 2345443 3445799988866 99999988887
Q ss_pred -HhcC
Q 004726 523 -RSFG 526 (733)
Q Consensus 523 -~~~G 526 (733)
.+.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 5544
No 177
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.25 E-value=1.7e-10 Score=121.73 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=111.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|||+|.||.++|..|...|++|++++++.++..... .+.| +...+..+++++|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence 5899999999999999999999999999888755432211 1111 2222222678899
Q ss_pred CEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCC-------CCCeeEEe-
Q 004726 389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV- 459 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~-------~~~lveiv- 459 (733)
|+|+.++|+. ....++ +++.+.++++++| +.++++.+.......+...+++-+.|..|.+ .+..+...
T Consensus 75 DVVvLaVPd~--~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDE--VQAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHH--HHHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 9999999943 336777 7798899999988 7788888887765555556788888988887 44333322
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCeeE
Q 004726 460 -RTERTSAQVILDLMTVGKIIKKVPV 484 (733)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lG~~~v 484 (733)
.....+.+..+.+..+++.+|..+.
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 3455678999999999999998865
No 178
>PRK07680 late competence protein ComER; Validated
Probab=99.25 E-value=2.4e-10 Score=119.88 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=110.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
+|+|||+|.||.+++..|.++|+ +|+++|+++++.+...+. ...+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence 69999999999999999999994 799999999876553210 0012333343 45
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~~ 463 (733)
+.+||+||.|+| +....++++++.+.++++++|++.++++++..+...+. .+.+..+|..|......+. ++.+..
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999998 66677888888888888888888888888888887664 3455666644322212222 345666
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
.+++..+.+.+++..+|. ++.+.
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEC
Confidence 788889999999999995 45554
No 179
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.24 E-value=2.2e-10 Score=123.50 Aligned_cols=196 Identities=17% Similarity=0.147 Sum_probs=120.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||+.+|..|+++|++|++||++++.++...+... ......+ . .....+..+++. +.+++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~-~------~~~~~~~~~~~~~~~~~~ 71 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRE---NPRYLPG-I------KLPDNLRATTDLAEALAD 71 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCc---ccccCCC-C------cCCCCeEEeCCHHHHHhC
Confidence 58999999999999999999999999999999988766432100 0000000 0 000123344455 46789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-------HHhcccCCCCcEEEEecCCCCC-------CC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAH-------VM 453 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-------~l~~~~~~~~~~ig~h~~~p~~-------~~ 453 (733)
||+||.|+|. .....++.++.+.+++++++++.++++.+. .+.+........ .....|.. ..
T Consensus 72 ~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~~ 147 (325)
T PRK00094 72 ADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGLP 147 (325)
T ss_pred CCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCCC
Confidence 9999999994 567788888988888898887766555542 122222110011 11112221 11
Q ss_pred CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc----------------------chhhh---hHHHHHHHHHH
Q 004726 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF----------------------AVNRA---FFPYSQSARLL 508 (733)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGf----------------------i~nRl---~~~~~~Ea~~l 508 (733)
.++. +.+ .+.+.++.+.++++..|..+....+..|. ..|.+ ....++|++.+
T Consensus 148 ~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 148 TAVV-IAS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred cEEE-EEe--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 1222 222 37889999999999999877666554431 22322 23345677777
Q ss_pred HHc-CCCHHHHHHH
Q 004726 509 VSL-GVDVFRIDSA 521 (733)
Q Consensus 509 ~~~-Gv~~~dID~a 521 (733)
.+. |++++.+...
T Consensus 225 a~~~G~d~~~~~~~ 238 (325)
T PRK00094 225 GVALGANPETFLGL 238 (325)
T ss_pred HHHhCCChhhhhcc
Confidence 755 7777776543
No 180
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.23 E-value=1.3e-10 Score=121.99 Aligned_cols=153 Identities=14% Similarity=0.051 Sum_probs=119.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC----CeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G----~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
|.+|+|||+|.||.+++..|.++| ++|++|+++++. ++.... . ...+..+++.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-----------~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-----------K-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-----------H-----------cCCeEEeCCH
Confidence 358999999999999999999998 789999987542 222110 0 0112223333
Q ss_pred -cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-c
Q 004726 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~ 460 (733)
+.+.++|+||+|+| ++...++++++.+.++++++|+|...++++.++.+.++. .+++.+.|+.|...+..+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 45789999999999 777888899998888888888888999999999987653 489999999888877776666 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEE
Q 004726 461 TERTSAQVILDLMTVGKIIKKVPVV 485 (733)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~ 485 (733)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6677899999999999999987754
No 181
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.23 E-value=2.9e-10 Score=118.19 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=124.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCe---eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
||+|||+|.||.+|+..|.+.|++ |.++|+++++.+...+. ......+++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence 699999999999999999999864 57899998886653221 0112223344 456
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~ 465 (733)
++||+||+|+| ++....++.++. +.++.++++..++.++..+...+....+.+..||..|......+..+...
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 88999999999 566677777662 45777888888899999999887665678888888776544444444322
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcC--CC------CcchhhhhHHHHHHHHHHH-HcCCCHHHHHHHH
Q 004726 466 AQVILDLMTVGKIIKKVPVVVGN--CT------GFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAI 522 (733)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~d--~p------Gfi~nRl~~~~~~Ea~~l~-~~Gv~~~dID~a~ 522 (733)
.+.++++++.+|..+.+..+ .. ++..| ++.++.++.... +.|+++++..+++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25789999999988764322 11 12222 223555665554 4589998877776
No 182
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.18 E-value=3.7e-12 Score=141.02 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=119.4
Q ss_pred eEEEEcCCcCcHHHHH--HH----HHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 310 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~--~l----~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
||+|||+|.||.+.+. .+ +..|++|++||++++.++.....+...+... .. ..++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~~--------~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----GA--------PLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----CC--------CeEEEEeCCHH
Confidence 7999999999998665 23 4568899999999999888665554433221 11 1357778886
Q ss_pred cccCCCCEEEEecc----------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCC--CCcEEEEecCCCC
Q 004726 383 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA 450 (733)
Q Consensus 383 ~~l~~aDlVI~avp----------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~--~~~~ig~h~~~p~ 450 (733)
+++++||+||++++ |++.+|..+++++...+.+++++.+++|+..+.+++..+.. | +.+.+||.||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 78999999999998 45889999999999999999999999999999999988763 6 89999999999
Q ss_pred CCC-----CeeEEecCCCCCHHHHHHHHHHHHHcCCee
Q 004726 451 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP 483 (733)
Q Consensus 451 ~~~-----~lveiv~~~~t~~e~~~~~~~l~~~lG~~~ 483 (733)
..+ +..+ ++.-.+..........+.+.+|..+
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 665 2222 1111122225556666777777643
No 183
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.18 E-value=4e-10 Score=119.31 Aligned_cols=202 Identities=11% Similarity=0.055 Sum_probs=135.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCC-hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||+|.||.++|..|...|++|+++++. .++.+++. +.| +..++..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 57999999999999999999999998876554 33433321 112 222332356789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCC-------CCeeE-Ee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLE-IV 459 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~-------~~lve-iv 459 (733)
||+||.++|+.. ....+.+++.+.++++. ++|...++++..+....+...+++-+.|..|.+. +..+. ++
T Consensus 60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 999999999442 35566677888888886 4577889999888777665568999999999974 55553 43
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EEc-CCCC-c-chhhhhHHHHH---HHHHHHHcCCCHHHHHHHH-
Q 004726 460 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-NCTG-F-AVNRAFFPYSQ---SARLLVSLGVDVFRIDSAI- 522 (733)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lG~~-------~v--~v~-d~pG-f-i~nRl~~~~~~---Ea~~l~~~Gv~~~dID~a~- 522 (733)
.+...+.+..+.+..++..+|.. .. .+. +.-+ + ++.=..-+|+. |++ ++.|++++.--...
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 56667889999999999999988 31 111 1001 0 00001112222 444 78899988866655
Q ss_pred HhcCCCccHHHHHHhhchH
Q 004726 523 RSFGLPIGPFQLLDLAGYG 541 (733)
Q Consensus 523 ~~~G~p~Gpf~~~D~~Gld 541 (733)
..+ .|-..++-..|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 322 4666666666663
No 184
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.18 E-value=8.4e-10 Score=113.91 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=128.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC---e-eEEEeC-ChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
.||+|||+|.||.+++..++++|. + |+++++ ++++++...+. . .+..+++.
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~~ 61 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------------------Y-NVSTTTDWK 61 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------------------c-CcEEeCChH
Confidence 589999999999999999998873 3 777887 45665443211 0 12223444
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cC
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT 461 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~ 461 (733)
+.++++|+||.|+| +....++++++.+.++ +.+|+|.+.+++++.+...+....+++..||..+......+... ..
T Consensus 62 ~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~ 138 (245)
T PRK07634 62 QHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMG 138 (245)
T ss_pred HHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeC
Confidence 55789999999999 6667888888887765 56788889999999998887655678889997766555443333 45
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcch------h-hhhHHHHHHHHH-HHHcCCCHHHHHHHH
Q 004726 462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAV------N-RAFFPYSQSARL-LVSLGVDVFRIDSAI 522 (733)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~------n-Rl~~~~~~Ea~~-l~~~Gv~~~dID~a~ 522 (733)
...+++..+.+.+++..+|..+.+ .+.--... + -+++.++..... .++.|+++++-.+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~ 206 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV 206 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 567899999999999999998864 32111111 0 112222222222 345588888866665
No 185
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.17 E-value=1.4e-10 Score=117.50 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeC
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~ 106 (733)
.-+..++.+|.+.|+++..|++|++|||+..++.| ++.+++++. +.+ +.+...+|||||.++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~ 86 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYAD 86 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeC
Confidence 34567799999999999999999999999888877 777766552 333 446668999999999
Q ss_pred CcccchhhHHhhhcCEEEEeCCceEeCcccc------------CCCCCC---------hhhhhh-----------h----
Q 004726 107 GLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQR-----------L---- 150 (733)
Q Consensus 107 G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~P~---------~g~~~~-----------l---- 150 (733)
| |.+||+.|+++||.+++.+.+.|+...+. +|+-+. .+..+. +
T Consensus 87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l 165 (222)
T cd07018 87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL 165 (222)
T ss_pred C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence 8 88999999999999999999999986442 333221 010010 0
Q ss_pred -------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHH
Q 004726 151 -------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192 (733)
Q Consensus 151 -------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~ 192 (733)
.|-+...... -+..|..+++++|++.||||++...+++.+.
T Consensus 166 ~~~~~~f~~~Va~~R~~~~~~~~-~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 166 DSLWDQYLADVAASRGLSPDALE-ALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH-HHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 1112222222 2445999999999999999999987777654
No 186
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.16 E-value=5.1e-10 Score=133.78 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=116.8
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
++||+|||+|.||.++|..+.+.| ++|++||+++++++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 578999999999999999999999 48999999998866532 122110 112233 45
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEEecCCCCC----------
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH---------- 451 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~~~ig~h~~~p~~---------- 451 (733)
+++||+||+|+| ++....+++++.+.++++++|++.+|+. ....+.+.+. ...+|++.||+..+.
T Consensus 61 ~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 789999999999 6778899999999888888776544432 2455555443 356899999975332
Q ss_pred --CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 452 --~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
....+.+++...++++..+.+.++++.+|+.++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 233456788888899999999999999999998884
No 187
>PLN02712 arogenate dehydrogenase
Probab=99.13 E-value=5.5e-10 Score=129.79 Aligned_cols=153 Identities=11% Similarity=0.041 Sum_probs=108.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.+||+|||+|.||.++|..|.+.|++|++||++.+. +.+ .+.| +...++. +.+.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~G-------------v~~~~~~~el~~ 423 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLG-------------VSYFSDADDLCE 423 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcC-------------CeEeCCHHHHHh
Confidence 358999999999999999999999999999998643 221 1112 1223344 3343
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCCCCCC-----ee-
Q 004726 387 -DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LL- 456 (733)
Q Consensus 387 -~aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-----lv- 456 (733)
+||+||.|+| +.....++.++.. .++++++|++.+|+ .++..+........+|++.||+.++.... ..
T Consensus 424 ~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~ 501 (667)
T PLN02712 424 EHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF 501 (667)
T ss_pred cCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence 5899999999 6667787888765 57889999887776 44555555555555799999988776531 11
Q ss_pred ----EEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 457 ----EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 457 ----eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
-++.++....+.++.+.++++.+|.+++.+.
T Consensus 502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 1123334456677778899999999999884
No 188
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.11 E-value=2.4e-09 Score=116.12 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=104.6
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CC---HHHHHHHhhccccccCcc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 383 (733)
++||+|||+|.||+++|..|+++|++|+++|+++. .+... +.|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 35799999999999999999999999999999643 22211 1111 00 000000112344455666
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhcccCCCCcEEEEecCCCCCCCCe-e-----
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFSPAHVMPL-L----- 456 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~~~ig~h~~~p~~~~~l-v----- 456 (733)
.++++|+||+|++.. ...++++++.+.++++++|++.++++.. ..+...+.....+.+.+++......|. +
T Consensus 70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 788999999999843 3467788899988999988877777664 345555443222334444221111110 0
Q ss_pred -EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 457 -EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 457 -eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
++.-+ ..+.++.+.++++..|..+.+.+|.-+
T Consensus 148 g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 148 GALAIE---ASPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred CceEec---CCchHHHHHHHHHhcCCCceecchhHH
Confidence 11112 124568899999999988888887554
No 189
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.11 E-value=7.4e-11 Score=124.96 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHH-HHHHHHHHHHHhCC---CC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQLYGN---FF 694 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~-~~~~~~~~~~~~~~---~~ 694 (733)
+++||.||++.+++|||++++++|++ |++|||.+|..|+|+|...-|||+++|.+|+|. +.+.++++...+.. .+
T Consensus 186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~ 264 (321)
T PRK07066 186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKL 264 (321)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhc
Confidence 58999999999999999999999999 999999999999999822339999999999998 44555555444321 24
Q ss_pred CCCHHHHHHHH------CCCCc--cccceeecCC
Q 004726 695 KPSRFLEERAT------KGIPL--VRIIFHRFSN 720 (733)
Q Consensus 695 ~p~~~l~~~~~------~g~~g--~g~gfy~y~~ 720 (733)
.+++++.+|++ ++.++ +..++|.|.+
T Consensus 265 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 265 VAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666665 44555 4668888764
No 190
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.09 E-value=8.1e-10 Score=114.58 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=101.9
Q ss_pred HHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCEEEEeccCChH
Q 004726 323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400 (733)
Q Consensus 323 iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avpe~~~ 400 (733)
||+.|.++| ++|+++|++++.++.+. +.|.++. ..++.+.+++||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCC--HH
Confidence 688999999 79999999999887752 3343321 1112467899999999999 99
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEEecCCCC------------CCCCeeEEecCCCCCH
Q 004726 401 LKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA 466 (733)
Q Consensus 401 ~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~~~ig~h~~~p~------------~~~~lveiv~~~~t~~ 466 (733)
....+++++.++++++++|++.+|+ .++..+.+......+|+|.||+..+ ..+..+-+++++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 9999999999999999999877765 3334444555556799999997666 2345677888998999
Q ss_pred HHHHHHHHHHHHcCCeeEEEc
Q 004726 467 QVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+.++.+.++++.+|.+++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999998873
No 191
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.09 E-value=1.8e-09 Score=109.30 Aligned_cols=162 Identities=16% Similarity=0.119 Sum_probs=106.7
Q ss_pred eEEEEc-CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
||+||| +|.||.++|..|+++|++|+++++++++++...+... ......|. . ..+..++..+.++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~---~~~~~~g~-~--------~~~~~~~~~ea~~~a 69 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKAL---EELGHGGS-D--------IKVTGADNAEAAKRA 69 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHH---hhccccCC-C--------ceEEEeChHHHHhcC
Confidence 799997 8999999999999999999999999988766433211 10001110 0 011222334678899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-----------------HHHhcccCCCCcEEEEecCCCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPAH 451 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-----------------~~l~~~~~~~~~~ig~h~~~p~~ 451 (733)
|+||.|+| .....++++++...++. ++|++.+.++.. +.+++.++...+++....+.+..
T Consensus 70 DvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~ 146 (219)
T TIGR01915 70 DVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAV 146 (219)
T ss_pred CEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHH
Confidence 99999999 77677778888766654 677776666654 23444443325666664432221
Q ss_pred C-------CCeeEEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004726 452 V-------MPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (733)
Q Consensus 452 ~-------~~lveiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d 488 (733)
. .+....+.|+ ++++.+.+..|.+.+ |..|+.++.
T Consensus 147 ~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 147 LLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 1 1122234454 677899999999999 999998764
No 192
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.07 E-value=8.8e-10 Score=118.80 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=97.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.+||..|+++|++|++|+++++..+...+...+. . .. .|. ....++..++++ +.+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~-~-~~-~g~-------~~~~~~~~~~~~~e~~~~ 74 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR-E-YL-PGV-------ALPAELYPTADPEEALAG 74 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc-c-cC-CCC-------cCCCCeEEeCCHHHHHcC
Confidence 4899999999999999999999999999999998776643210000 0 00 010 000123344555 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC-----HHHHhcccCC--CCcEE-EEecCCCCCC---CCee
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRII-GAHFFSPAHV---MPLL 456 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-----~~~l~~~~~~--~~~~i-g~h~~~p~~~---~~lv 456 (733)
||+||+|+|+. ..++++ +.+++++++++.++++. ...+++.+.. ..++. ..-|..+... .+..
T Consensus 75 aD~Vi~~v~~~--~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~ 148 (328)
T PRK14618 75 ADFAVVAVPSK--ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAA 148 (328)
T ss_pred CCEEEEECchH--HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeE
Confidence 99999999955 223443 44567777776666544 2233333321 11111 1112111111 1222
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
.++.+ .+++.++.++++++..|..+....|.-|
T Consensus 149 ~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 149 TVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred EEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 33333 3788999999999999987775444333
No 193
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.05 E-value=3.5e-09 Score=118.12 Aligned_cols=199 Identities=16% Similarity=0.191 Sum_probs=127.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHH----HHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
+||+|||+|.+|..+|..|+++| ++|+++|+++++++...+.. +..+++++.++ .-.++.+++++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~~ 72 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTDV 72 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcCH
Confidence 57999999999999999999984 78999999999988754321 11111111110 11247888887
Q ss_pred -cccCCCCEEEEeccCC-------------hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH---HhcccC---------
Q 004726 383 -SEFKDVDMVIEAVIES-------------VPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS--------- 436 (733)
Q Consensus 383 -~~l~~aDlVI~avpe~-------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~--------- 436 (733)
+++++||++|.|||.. +.....+.++|.++++++++|+. .||.++.. +...+.
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f~ 151 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINFQ 151 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCeE
Confidence 5799999999999633 33667777889999999887753 44544432 221111
Q ss_pred ---CCCcEEEEe----cCCCCCCCCeeEEecCCC--CCHHHHHHHHHHHHHcCC-eeEEEc-----CCCCcchhhh---h
Q 004726 437 ---SQDRIIGAH----FFSPAHVMPLLEIVRTER--TSAQVILDLMTVGKIIKK-VPVVVG-----NCTGFAVNRA---F 498 (733)
Q Consensus 437 ---~~~~~ig~h----~~~p~~~~~lveiv~~~~--t~~e~~~~~~~l~~~lG~-~~v~v~-----d~pGfi~nRl---~ 498 (733)
.|++..... |.+|+.+ |+.+.. ..+++.+.+.+++..+-+ .++.+. |...++.|-+ -
T Consensus 152 v~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~ 226 (473)
T PLN02353 152 ILSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQR 226 (473)
T ss_pred EEECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHH
Confidence 122111111 1222221 334432 226688999999998753 445443 2334555644 3
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHH
Q 004726 499 FPYSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 499 ~~~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.+++||...+.+. |+++.+|-.++
T Consensus 227 Iaf~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 227 ISSVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 5889998777766 99999999888
No 194
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.05 E-value=1.3e-08 Score=108.59 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=93.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.+||..|+++|++|++|++++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 37999999999999999999999999999998631 11 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCCHHH------HhcccCCCCcEEEEecCCCCC------CCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNI------VGEKTSSQDRIIGAHFFSPAH------VMP 454 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~~------l~~~~~~~~~~ig~h~~~p~~------~~~ 454 (733)
||+||.|+|. ...+.+++++... +++++++++.++++.+.. +....-....++.+ ..|.. ..+
T Consensus 48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i--~gp~~a~ei~~~~~ 123 (308)
T PRK14619 48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVL--SGPNLSKEIQQGLP 123 (308)
T ss_pred CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEE--ECCCcHHHHhcCCC
Confidence 9999999994 4677788888764 678888877666454432 11111011122210 11110 112
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
..-++.+ .+.+..+.+++++...|..++..+|.-|
T Consensus 124 ~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 124 AATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 2222333 2788999999999999988886666444
No 195
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.04 E-value=2e-09 Score=111.86 Aligned_cols=143 Identities=16% Similarity=0.151 Sum_probs=110.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
||+|||+|+||++|+..|.++|. +|+++|+++++.. +....+. +.
T Consensus 5 kI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~~ 54 (260)
T PTZ00431 5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP------------------------------FVYLQSNEEL 54 (260)
T ss_pred EEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC------------------------------eEEeCChHHH
Confidence 79999999999999999999873 4999998875310 0112222 45
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeE-EecCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lve-iv~~~~ 463 (733)
+.+||+||.|+| +.....++.++.+.++++ +|+|..+++..+.+...+....+++...|..|........ +++...
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999998 888899999998877665 5568888899988888776555567777777766655443 456677
Q ss_pred CCHHHHHHHHHHHHHcCCeeEE
Q 004726 464 TSAQVILDLMTVGKIIKKVPVV 485 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~ 485 (733)
++++..+.+..+++.+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8899999999999999987755
No 196
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.03 E-value=2.3e-09 Score=103.95 Aligned_cols=145 Identities=24% Similarity=0.334 Sum_probs=100.9
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
.+|.++. .+++...+.|.++|+.+++++ ++.|+|.=. |.|+++. ....++ +.|.
T Consensus 2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~----------------~~~~I~-~~l~ 55 (178)
T cd07021 2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVD----------------SALEIV-DLIL 55 (178)
T ss_pred EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHH----------------HHHHHH-HHHH
Confidence 4555644 477788899999999998876 677777411 1122222 122455 6688
Q ss_pred cCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhh--------hh------hccccC--HHHH
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT--------QR------LPRLVG--LSKA 159 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~--------~~------l~r~~G--~~~a 159 (733)
.+++|||+.|+|.|.++|+.++++||++++++++.|+.+++- +..|+. .. +.+.-| ...+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 899999999999999999999999999999999999988553 332220 11 111112 3444
Q ss_pred HHHHHcC-------------CCCCHHHHHHcCCccEEcC-cchHH
Q 004726 160 IEMMLLS-------------KSITSEEGWKLGLIDAVVT-SEELL 190 (733)
Q Consensus 160 ~~l~ltG-------------~~i~a~eA~~~Glv~~vv~-~~~l~ 190 (733)
..|+-.. -.++++||++.|++|.+.+ .++|+
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 5555544 3799999999999999985 34443
No 197
>PLN02712 arogenate dehydrogenase
Probab=99.02 E-value=6.5e-09 Score=120.90 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=104.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc-C
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-~ 386 (733)
++|+|||+|.||.++|..|.+.|++|++||++... +.+. +.| +...++. +.+ .
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~~ 107 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCER 107 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhhc
Confidence 48999999999999999999999999999998543 2211 111 2223344 323 5
Q ss_pred CCCEEEEeccCChHHHHHHHHHHH-HhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCCCC-----CeeEE
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEI 458 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~-~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~~~-----~lvei 458 (733)
+||+||.|+| +.....++.++. ..++++++|++.+|... ...+...+.....|++.||+..+... ....+
T Consensus 108 ~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~ 185 (667)
T PLN02712 108 HPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFV 185 (667)
T ss_pred CCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEE
Confidence 6999999999 677788888875 56788998887665432 23344444444479999997766521 11122
Q ss_pred ec-----CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 459 VR-----TERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 459 v~-----~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
.. .+....+.++.+.++++.+|.+++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 186 YEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 22 222345667888899999999999884
No 198
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.99 E-value=4.1e-10 Score=117.01 Aligned_cols=108 Identities=23% Similarity=0.272 Sum_probs=84.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||+|||+|.||.++|..|+++||+|++|.++++..++.... +.+ .+++. |.. ....+.+++|+ +++++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N-~~yLp-~i~-------lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-REN-PKYLP-GIL-------LPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcC-ccccC-Ccc-------CCcccccccCHHHHHhc
Confidence 589999999999999999999999999999999988875432 111 11111 211 11357778888 67788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
||+|+.+|| .+..+++++++...+++++++++.+.++..
T Consensus 72 ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 72 ADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred CCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccC
Confidence 999999999 899999999998889999999887776554
No 199
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.99 E-value=9.7e-09 Score=99.91 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=103.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
|++|+|+|+|.||+++|..|+++||+|++-.++.+. ++.+.+.+ ...+...+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence 468999999999999999999999999999666554 43332211 12355555667889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC----------------HH-HHhcccCCCCcEEE-Ee---
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LN-IVGEKTSSQDRIIG-AH--- 445 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~----------------~~-~l~~~~~~~~~~ig-~h--- 445 (733)
.||+||.+|| ......+.+++...+. +.|+++.|-.+. .+ .+++.++.. +++. .|
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 7777788888887765 778876554321 11 112222222 2222 11
Q ss_pred ---cCCCCCC-CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 446 ---FFSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 446 ---~~~p~~~-~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
+-+-+.. ....-.+++. +.++.+.+.++.+.+|..|+.++.
T Consensus 136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 1111122 3334455554 888999999999999999999875
No 200
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.95 E-value=4.9e-09 Score=116.40 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=119.5
Q ss_pred CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc---cCCCCEEEEe
Q 004726 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE---FKDVDMVIEA 394 (733)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~---l~~aDlVI~a 394 (733)
||..||.+|+++|++|++|||++++.+...+. .|. . ..+....++ +. ++.+|+||.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988765320 010 0 012333444 22 3458999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh--cccCCCCcEEEEecCCCCCCCCe------eEEecCCCCCH
Q 004726 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG--EKTSSQDRIIGAHFFSPAHVMPL------LEIVRTERTSA 466 (733)
Q Consensus 395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~--~~~~~~~~~ig~h~~~p~~~~~l------veiv~~~~t~~ 466 (733)
||....+.. ++..+.+.+.++.||++.+++.+..... +.+.. .|+||+..|..+.. --+++|. ++
T Consensus 62 v~~g~~v~~-Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~siM~GG--~~ 134 (459)
T PRK09287 62 VKAGAPVDA-VIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGPSIMPGG--QK 134 (459)
T ss_pred CCCchHHHH-HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCCEEEEeC--CH
Confidence 997766544 5578888899998887655444433222 22211 25566544432210 1244443 79
Q ss_pred HHHHHHHHHHHHcCCee-------EEEcCCC-C----cchhhhhHH---HHHHHHHHHHc--CCCHHHHHHHHHhc
Q 004726 467 QVILDLMTVGKIIKKVP-------VVVGNCT-G----FAVNRAFFP---YSQSARLLVSL--GVDVFRIDSAIRSF 525 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~-------v~v~d~p-G----fi~nRl~~~---~~~Ea~~l~~~--Gv~~~dID~a~~~~ 525 (733)
++++.++++++.++.++ .++++.. | .+.|-+.+. .+.|++.+++. |++++++-.++..+
T Consensus 135 ~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~w 210 (459)
T PRK09287 135 EAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEW 210 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 99999999999999876 7888631 2 233545443 35699999983 89999998888433
No 201
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.95 E-value=7.5e-10 Score=105.91 Aligned_cols=104 Identities=24% Similarity=0.246 Sum_probs=77.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCc-cccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
||+|||+|.||.++|..|+++|++|++|.++++.++...+. ..... +.. ......+..++|+ +++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~--------~~n~~~~~~---~~l~~~i~~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET--------RQNPKYLPG---IKLPENIKATTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH--------TSETTTSTT---SBEETTEEEESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh--------CCCCCCCCC---cccCcccccccCHHHHhCc
Confidence 79999999999999999999999999999999877764321 11000 110 0111346678887 67899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
+|+||.+|| ....+.+++++.+++++++++++.+.++
T Consensus 70 ad~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 70 ADIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred ccEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999 7778899999999999999988877776
No 202
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.95 E-value=2.8e-09 Score=104.44 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=74.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH--------HHHHHHhHhcCCCCHHHHHHHhhcccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI--------EANVRGLVTRGKLTQDKANNALKMLKGVL 380 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i--------~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 380 (733)
+||+|||+|.+|..+|..|+++||+|+++|+|++.++...+.. ...+.+.++ -+++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence 4899999999999999999999999999999999888754211 111111111 25678888
Q ss_pred Cc-cccCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh
Q 004726 381 DY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (733)
Q Consensus 381 ~~-~~l~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~ 432 (733)
+. +++++||++|.|||. |.....+..+.|.+.++++.+|+ .-||+++....
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppGtt~ 128 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPGTTE 128 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTTHHH
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEeeeh
Confidence 87 458999999999974 45667788889999999998875 45566655333
No 203
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.94 E-value=1.7e-09 Score=115.39 Aligned_cols=126 Identities=20% Similarity=0.316 Sum_probs=92.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.+||+|||+|.||.++|..++..|+ +|+++|++++.++. . . ++..... .......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-~----ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-A----LDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-H----HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 99999999987532 1 1 1111110 0011113566677889999
Q ss_pred CCCEEEEec-------------------cCChHHHHHHHHHHHHhCCCC-eEEEecCCCCCHHHHhcccCCC-CcEEEEe
Q 004726 387 DVDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (733)
Q Consensus 387 ~aDlVI~av-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~~~ig~h 445 (733)
+||+||+++ +++..+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 567888999999999999775 4556888877777777666654 7888875
No 204
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.92 E-value=9.4e-08 Score=98.65 Aligned_cols=147 Identities=18% Similarity=0.141 Sum_probs=96.9
Q ss_pred cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCCCEEEEeccCC
Q 004726 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (733)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVI~avpe~ 398 (733)
|.+||.+|+++||+|++||+++++.+... .+.+.+.| ...+++. +++++||+||.|+|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence 88999999999999999999987654211 01122223 2223333 7789999999999965
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC-------CCCcEEEEecCCCCCC-CCeeEEecC------CCC
Q 004726 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-------SQDRIIGAHFFSPAHV-MPLLEIVRT------ERT 464 (733)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-------~~~~~ig~h~~~p~~~-~~lveiv~~------~~t 464 (733)
..+. +++..+.+.++++++|+ ++||+++..+...+. ....+..+||-.-|.. ..-.-++.+ ...
T Consensus 93 aaV~-eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTF-SIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHH-HHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 5554 44577888889999875 567777765554332 1224555666332211 111112222 234
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004726 465 SAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
++|.++++.++.+..|+.++++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 89999999999999999999883
No 205
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.91 E-value=2.1e-09 Score=114.16 Aligned_cols=122 Identities=18% Similarity=0.303 Sum_probs=87.4
Q ss_pred EEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
|+|||+|.||.++|..++..|+ +|+++|++++.++ +... . +.... .......++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~--d-l~~~~--------~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKAL--D-ISQAA--------PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHH--H-HHHhh--------hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999987543 2221 0 01100 0111123566667788899999
Q ss_pred EEEEec--------------cCChHHHHHHHHHHHHhCCCCeE-EEecCCCCCHHHHhcccCC-CCcEEEE
Q 004726 390 MVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (733)
Q Consensus 390 lVI~av--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~~~ig~ 444 (733)
+||+++ +++..+++++++++.++++++.+ +++|.+.+....+.+.... +.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999976 67899999999999999987774 4577776666555555543 4577775
No 206
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.89 E-value=8.1e-09 Score=94.00 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=72.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
.||+|||+|.+|..++..|.++|++|..+ .+++++.+++...+ ......+..+.+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~~ 68 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILRD 68 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------cccccccccccccc
Confidence 48999999999999999999999999865 67777766653211 12222233367899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHh--CCCCeEEEecCCCCCHHHHhcccCCCCcEEEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~--~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~ 446 (733)
+|++|++||++ ....+.++|... ..++++|+=.+.+.+.+.+............+||
T Consensus 69 aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 69 ADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp -SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred CCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 99999999966 566888888877 7788887643334555555554445556667775
No 207
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.87 E-value=3.2e-09 Score=92.58 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=68.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCC---CeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc--cCcc
Q 004726 310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LDYS 383 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G---~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~--~~~~ 383 (733)
||+|||+|.||.+|+..|.++| ++|.++ +++++++++..++. + .... +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~-~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------G-VQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------T-TEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------c-cccccCChHH
Confidence 7999999999999999999999 899955 99999987753311 1 2222 3337
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
.++++|+||.||| +....++++++ ....++.+++|.+.
T Consensus 58 ~~~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 58 AAQEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred hhccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 7889999999999 88888999999 66677888877553
No 208
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.87 E-value=5.5e-09 Score=111.54 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=82.3
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... .. ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~----~~--------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA----AP--------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh----hh--------hcCCCcEEEeCCCHHHHC
Confidence 4699999999999999999999876 9999999988754321111111 00 011113566667788899
Q ss_pred CCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCeEE-EecCCCCCHHHHhcccCC-CCcEEEE
Q 004726 387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL-ATNTSTIDLNIVGEKTSS-QDRIIGA 444 (733)
Q Consensus 387 ~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~l~~~~~~-~~~~ig~ 444 (733)
+||+||+++ .++..+++++++++.+.+++..+| ++|.+.+....+...... +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999987 356688999999999998665333 344443333233232222 2455554
No 209
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.85 E-value=6e-09 Score=111.27 Aligned_cols=125 Identities=23% Similarity=0.308 Sum_probs=90.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
.||+|||+|.||.++|..++..| .+|+++|++++.++ +.. + +..... .......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-l----Dl~~~~------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-L----DLKHFS------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-H----HHhhhc------cccCCCeEEEeCCCHHHhCC
Confidence 48999999999999999999999 69999999988755 211 1 100000 00111124555678889999
Q ss_pred CCEEEEec--cCCh------------HHHHHHHHHHHHhCCCC-eEEEecCCCCCHHHHhcccCCC-CcEEEEe
Q 004726 388 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (733)
Q Consensus 388 aDlVI~av--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~~~ig~h 445 (733)
||+||+++ |+++ .+++++.+++.+++++. .|++||.+.+....+.+....| .+++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999999 7766 88999999999998777 4556777766666665655544 6788764
No 210
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=6.4e-08 Score=94.41 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=124.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD 389 (733)
+|+.||+|.||..++.+|++.||+|++||+|+++.+.+.+ .|.....+.++.. +.+...-
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~ga~~a~sl~el~---------~~L~~pr 61 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EGATGAASLDELV---------AKLSAPR 61 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cCCccccCHHHHH---------HhcCCCc
Confidence 6899999999999999999999999999999999887532 2211111111111 3455667
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCe-------eEEecCC
Q 004726 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------LEIVRTE 462 (733)
Q Consensus 390 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l-------veiv~~~ 462 (733)
.|-.+||- -++..++++++.+.+.++-+|++...+.--..+...-... -.|+||++.-..+.. .-.|.|
T Consensus 62 ~vWlMvPa-g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~--~kgi~flD~GTSGG~~G~~~G~~lMiGG- 137 (300)
T COG1023 62 IVWLMVPA-GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLA--EKGIHFLDVGTSGGVWGAERGYCLMIGG- 137 (300)
T ss_pred EEEEEccC-CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHH--hcCCeEEeccCCCCchhhhcCceEEecC-
Confidence 88999982 2367789999999999999888755543322222211111 237788654332211 113344
Q ss_pred CCCHHHHHHHHHHHHHcCC---eeEEEcC-CCCcch----hhhhHH---HHHHHHHHHHcC---CCHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFAV----NRAFFP---YSQSARLLVSLG---VDVFRIDSAI 522 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~---~~v~v~d-~pGfi~----nRl~~~---~~~Ea~~l~~~G---v~~~dID~a~ 522 (733)
++++++.+.++++.+.. -..++++ ..|..+ |-+=+. -+.|.+.++++. ++.++|.+++
T Consensus 138 --~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 138 --DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred --cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 79999999999998865 3355654 334333 655333 345899999885 4888888888
No 211
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.75 E-value=8.7e-08 Score=103.64 Aligned_cols=176 Identities=15% Similarity=0.083 Sum_probs=108.5
Q ss_pred CCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
+.++||+|||+|.||+++|..|+++| +|++|.++++..+...+.- .....+... ......+..+++. ++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~-------~~~~~l~~~--~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNH-------RNSRYLGND--VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcC-------CCcccCCCC--cccCCCeEEECCHHHH
Confidence 34568999999999999999999999 7899999998876643210 000000000 0011235556666 56
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH------H-HHhcccCCCCcE-EEEecCCCCC--CCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------N-IVGEKTSSQDRI-IGAHFFSPAH--VMP 454 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~------~-~l~~~~~~~~~~-ig~h~~~p~~--~~~ 454 (733)
++++|+||.|+| ....+.+++++.+.+++++++++.+.++.. + .+.+.+.. .++ +-..|..+.. .+.
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY 151 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence 889999999999 888889999999999888877766666664 2 33333322 121 1122211111 011
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcchh
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN 495 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~pGfi~n 495 (733)
...++-+. .+++..+.+.+++..-+-++....|..|...-
T Consensus 152 ~t~~via~-~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~ 191 (341)
T PRK12439 152 AAAAVLAM-PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMA 191 (341)
T ss_pred CeEEEEEe-CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHH
Confidence 11122222 26777788888887767666666776654443
No 212
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=3.1e-07 Score=96.00 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=130.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc----cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 384 (733)
..|||||+|.||+.+|.+++++|++|.+|+|+.++.+...+. ..+ + ..+..+.++ +.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~-------~~~-~-----------k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-------RAK-G-----------KNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh-------Ccc-C-----------CCccccCcHHHHHHH
Confidence 469999999999999999999999999999999998875431 111 1 123333333 34
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc---ccCCCCcEEEEec-------CCCCCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHF-------FSPAHVMP 454 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~~~ig~h~-------~~p~~~~~ 454 (733)
++.---|+.+|.-- .....++++|.+++.++-||++...+.-..++.. .....-.|+|+-. .+.|.+
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSi-- 141 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSI-- 141 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCc--
Confidence 56677888888644 3346788999999999999987655543333332 2233446777654 233344
Q ss_pred eeEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEc-CCCCcch----hhhh---HHHHHHHHHHHHcC--CCHHHH
Q 004726 455 LLEIVRTERTSAQVILDLMTVGKIIKKV------PVVVG-NCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFRI 518 (733)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~-d~pGfi~----nRl~---~~~~~Ea~~l~~~G--v~~~dI 518 (733)
+||. ++++.+.+.++++.+..+ ..+++ +..|..+ |-+= +.++.|+..++..+ ++.++|
T Consensus 142 ----MpGG--~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei 215 (473)
T COG0362 142 ----MPGG--QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEI 215 (473)
T ss_pred ----CCCC--CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3553 899999999999887532 23444 5566544 5552 35678999999885 599999
Q ss_pred HHHHHhcC
Q 004726 519 DSAIRSFG 526 (733)
Q Consensus 519 D~a~~~~G 526 (733)
-.+...|.
T Consensus 216 ~~vF~~WN 223 (473)
T COG0362 216 AEVFEEWN 223 (473)
T ss_pred HHHHHHhc
Confidence 99985554
No 213
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.62 E-value=6e-07 Score=88.45 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=83.3
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
||+|||. |.||.-++..|.++|+.|++ ++|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~~ 32 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KKA 32 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CCC
Confidence 7999998 99999999999999999861 368
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCC-----CeeEEecCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTER 463 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~-----~lveiv~~~~ 463 (733)
|+||.|+| +....++++++. .+|++.+|+... +.+. ..+|+|.||...|... ..+ ++..+.
T Consensus 33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~~--i~~~---~~~~vg~HPMfGp~~a~~~lf~~~-iv~~~~ 98 (197)
T PRK06444 33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKWP--FKKY---SGKIVSIHPLFGPMSYNDGVHRTV-IFINDI 98 (197)
T ss_pred CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCHH--HHHh---cCCEEecCCCCCCCcCcccccceE-EEECCC
Confidence 99999999 777677777653 256666665432 2222 3479999997665332 222 334567
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
++++.++.+.++++ |.+++.+.
T Consensus 99 ~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 99 SRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCHHHHHHHHHHHc--CCEEEEeC
Confidence 78888999999998 87777763
No 214
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.58 E-value=1.6e-07 Score=100.63 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=77.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCC--------CeeEEEeCC-----hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc
Q 004726 310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEVN-----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G--------~~V~~~d~~-----~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 376 (733)
||+|||+|.||.++|..|+.+| ++|++|.++ ++..+.. .+..+....-+. -.....+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~i--------n~~~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEII--------NTTHENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHH--------HhcCCCccccCC--CcCCCCe
Confidence 6899999999999999999999 999999984 3332221 111111100000 0012356
Q ss_pred ccccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 377 ~~~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
.+++|+ +++++||+||.+|| .+..+.+++++.++++++.++++.+.++..+
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 677787 57899999999999 8888899999999998888888877776554
No 215
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.56 E-value=5e-06 Score=89.01 Aligned_cols=175 Identities=8% Similarity=0.082 Sum_probs=100.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l 385 (733)
..+||+|||+|.||+.+|..|+++|++|+++.+++. +.. .+.|. +....-+.....+...++.+.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAV-----------RENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHH-----------HhCCeEEEeCCCCeeecCceEEcchhhc
Confidence 345899999999999999999999999999999863 221 11110 0000000000112223344556
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEEE-ec-----CCCCC---CC-C
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGA-HF-----FSPAH---VM-P 454 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~~~ig~-h~-----~~p~~---~~-~ 454 (733)
..+|+||.|++... ..++++.+.+.+.+++++++...++... .+.+.++ ++++++. .+ ..|.. .. .
T Consensus 71 ~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence 78999999998332 3567788888888888777666666554 3444433 2344432 22 22210 10 0
Q ss_pred eeEEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCCCcchhhh
Q 004726 455 LLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 497 (733)
Q Consensus 455 lveiv~~~~t~-----~e~~~~~~~l~~~lG~~~v~v~d~pGfi~nRl 497 (733)
.+.+-.....+ .+..+.+.++++..|-...+..|....+..++
T Consensus 148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl 195 (313)
T PRK06249 148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKL 195 (313)
T ss_pred cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHh
Confidence 11111111112 46677788888888877766667555444444
No 216
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.55 E-value=2.6e-06 Score=90.92 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=94.1
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCc-cccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
||+|||+|.||..+|..|+++|++|+++++ ++.++...+ .|. +.....+. .-.....++. +..++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHGDA-VVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCCeE-EecceeecCHHHccCC
Confidence 799999999999999999999999999999 766554321 110 00000000 0001123333 33588
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhcccCCCCcEE-EEecCCCCCCCC-eeE------E
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP-LLE------I 458 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~~~i-g~h~~~p~~~~~-lve------i 458 (733)
+|+||.|++. .....+++++.+.++++++|++...++.. ..+.+.+.. .+++ +..++......+ .+. +
T Consensus 69 ~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 9999999983 34466778888888888877665556553 344444332 2333 222211111111 111 1
Q ss_pred ecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004726 459 VRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCT 490 (733)
Q Consensus 459 v~~--~~t~~e~~~~~~~l~~~lG~~~v~v~d~p 490 (733)
+-| +....+..+.+.+++...|.......|..
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~ 179 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIR 179 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHH
Confidence 111 22234566677777887776655555543
No 217
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.54 E-value=4.8e-07 Score=97.49 Aligned_cols=104 Identities=18% Similarity=0.130 Sum_probs=73.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCc-ccc-C
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEF-K 386 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~l-~ 386 (733)
||+|||+|.||..+|..|+++|++|++|+++++.++...+. ..... +... .....+..+++. +.+ .
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~--------~~~~~~~~~~---~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK--------RKNLKYLPTC---HLPDNISVKSAIDEVLSD 70 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc--------CCCcccCCCC---cCCCCeEEeCCHHHHHhC
Confidence 69999999999999999999999999999998876654221 00000 0000 000123445555 344 5
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHH-hCCCCeEEEecCCCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI 426 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~ 426 (733)
++|+||.+|| .....++++++.+ .+++++.+++.++++
T Consensus 71 ~~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 71 NATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 8999999998 7777888999987 888887666556665
No 218
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.53 E-value=2.6e-07 Score=99.80 Aligned_cols=111 Identities=21% Similarity=0.136 Sum_probs=78.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-------CeeEEEeCChHH-HHHHHHHHHHHHHHhHhc-CCCCHHHHHHHhhccccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-LLKGIKTIEANVRGLVTR-GKLTQDKANNALKMLKGV 379 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~-g~~~~~~~~~~~~~i~~~ 379 (733)
+||+|||+|.||.++|..|+++| ++|.+|.++++. -++..+.+. ....+ ..+..- .....+..+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in----~~~~N~~ylp~~---~Lp~ni~~t 84 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIIN----TKHENVKYLPGI---KLPDNIVAV 84 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHH----hcCCCcccCCCC---cCCCceEEe
Confidence 47999999999999999999997 899999999862 111111111 11111 111100 122457777
Q ss_pred cCc-cccCCCCEEEEeccCChHHHHHHHHHHHH--hCCCCeEEEecCCCCCH
Q 004726 380 LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDL 428 (733)
Q Consensus 380 ~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~--~~~~~~ii~s~tS~~~~ 428 (733)
+|+ +++++||+||.+|| ++..+++++++.+ .++++++++|.+.++.+
T Consensus 85 sdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred cCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 887 57899999999999 8989999999988 77777777776665543
No 219
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.53 E-value=2.1e-07 Score=98.71 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=68.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+|.||.++|..++..|+ +|+++|++++..+ +... . ..+.+. ......++.++++++.+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~--d----~~~~~~-----~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKAL--D----MYEASP-----VGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHH--h----hhhhhh-----ccCCCcEEEecCCHHHhCC
Confidence 389999999999999999999887 8999999876433 2210 0 011110 0111246777888877999
Q ss_pred CCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004726 388 VDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 388 aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||+||.+++ .+.++.+++.+++.++.+ +.+++
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iI 115 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIV 115 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 999999997 244666667777888764 44443
No 220
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.52 E-value=8.4e-07 Score=94.59 Aligned_cols=110 Identities=18% Similarity=0.117 Sum_probs=74.7
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
||+|||+|.||+.+|..|+++|++|++++++++..+...+ .|. ++..+ ....+..+++.+.++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRLEDGE---ITVPVLAADDPAELGPQ 67 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCcccCCc---eeecccCCCChhHcCCC
Confidence 6999999999999999999999999999998877655322 111 00000 00112223444445899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH-HHHhccc
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT 435 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~ 435 (733)
|+||.|++ ......+++++.+.+.++++|++...++.. ..+...+
T Consensus 68 d~vila~k--~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 68 DLVILAVK--AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred CEEEEecc--cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 99999998 334567888898888888777666666653 3344433
No 221
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.51 E-value=2.3e-06 Score=82.20 Aligned_cols=141 Identities=24% Similarity=0.285 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeC
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~ 106 (733)
.+++.+.+-|.+.++.++++ +++.|+|.=. |-|+++.. ...++ +.|...++||++.|.
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCcCEEEEEe
Confidence 47778888999999999865 4677777411 22232221 12444 567789999999999
Q ss_pred ---CcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChh--h------hhh------hccccC--HHHHHHHHHcCC
Q 004726 107 ---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG--G------TQR------LPRLVG--LSKAIEMMLLSK 167 (733)
Q Consensus 107 ---G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g--~------~~~------l~r~~G--~~~a~~l~ltG~ 167 (733)
|.|..+|.-++++||.+++.+++.++....-.|.-+... . +.. +.+.-| ...+..++....
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~ 146 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL 146 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence 999999999999999999999999998777433211000 0 111 112223 456677888889
Q ss_pred CCCHHHHHHcCCccEEcCc-chH
Q 004726 168 SITSEEGWKLGLIDAVVTS-EEL 189 (733)
Q Consensus 168 ~i~a~eA~~~Glv~~vv~~-~~l 189 (733)
.++|+||++.|++|.|+.. ++|
T Consensus 147 ~lta~EA~~~G~iD~ia~~~~~l 169 (172)
T cd07015 147 SLTPEEALKYGVIEVVARDINEL 169 (172)
T ss_pred CcCHHHHHHcCCceeeeCCHHHH
Confidence 9999999999999999854 444
No 222
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.47 E-value=5e-07 Score=96.85 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=75.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|..+...|++|++||++++..... +..++++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 379999999999999999999999999999987542110 1122334 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~ 436 (733)
||+|+.++|...+....+.+++.+.++++++++..+-+..+ ..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999998888888878888889999988754444333 34444443
No 223
>PRK10949 protease 4; Provisional
Probab=98.46 E-value=1.5e-06 Score=99.95 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=106.5
Q ss_pred cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchh
Q 004726 12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (733)
Q Consensus 12 ~~~i~~i~l~~p----~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (733)
++.|++|+++-+ + .+.++. +.+.+.|+++..|++||+|||.=..+ |+.... .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence 567999998654 1 234443 67788899999999999999974322 111110 111
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccc------------cCCCCCChhhhhhh---
Q 004726 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGTQRL--- 150 (733)
Q Consensus 86 ~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~P~~g~~~~l--- 150 (733)
..+.+ ..+....|||||.+.+.|..||.-++++||.++|.+.+..|...+ ++|+.+..-.+-.+
T Consensus 385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22333 345667899999999999999999999999999999887766444 34443321111100
Q ss_pred -------------------------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHH
Q 004726 151 -------------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (733)
Q Consensus 151 -------------------------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (733)
.|.+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~ 538 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE 538 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 111222222 22568999999999999999999865555444443
No 224
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.45 E-value=4e-07 Score=94.89 Aligned_cols=96 Identities=30% Similarity=0.391 Sum_probs=74.7
Q ss_pred EEEEcC-CcCcHHHHHHHHHCC----CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC-ccc
Q 004726 311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE 384 (733)
Q Consensus 311 I~VIG~-G~mG~~iA~~l~~~G----~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 384 (733)
|+|||+ |.||.++|..++..| .+|+++|+++++++.....++...... ...++..++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777555443322111 1135666777 488
Q ss_pred cCCCCEEEE--------------eccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 385 l~~aDlVI~--------------avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+++||+||+ .+.++..+++++.+++.+++ ++++++
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i 116 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWII 116 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence 999999999 66678889999999999998 555544
No 225
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.43 E-value=9.5e-08 Score=99.37 Aligned_cols=94 Identities=19% Similarity=0.079 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhc-CcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEE-GIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS 697 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~e-gv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d~~~~~~~~~~~~~~~~~~p~ 697 (733)
+.+|.++|++.+|.+++.+++.| |+ +|..+|.. ..-||||+ ||++++|..|+|+..+.-..+...++++
T Consensus 171 c~gf~v~r~l~~y~~~~~~~l~e~g~--~p~~iD~~-~t~fGf~~---g~~~L~d~~gfdv~eal~~gl~~~~~~r---- 240 (380)
T KOG1683|consen 171 CCGFRVNRLLPPYTIGLNELLLEIGA--DPWLIDSL-ITKFGFRV---GERALADGVGFDVAEALAVGLGDEIGPR---- 240 (380)
T ss_pred CCceEEEecccHHHHHHHHHHHHcCC--CHHHHHHH-HHhcCccc---cHHHHhhccCccHHHHHhhccchhccch----
Confidence 67889999999999999999998 55 59999999 67899999 9999999999999666665555544443
Q ss_pred HHHHHHHHCCCCc--cccceeecCCCcc
Q 004726 698 RFLEERATKGIPL--VRIIFHRFSNIFS 723 (733)
Q Consensus 698 ~~l~~~~~~g~~g--~g~gfy~y~~~~~ 723 (733)
+.++|+++|+.| +++|||.|..+--
T Consensus 241 -~~eel~~~~~~g~kT~kg~y~y~~~l~ 267 (380)
T KOG1683|consen 241 -IEEELLEKGRAGIKTGKGIYPYARGLT 267 (380)
T ss_pred -hHHHHHHHHhhhhhccCcccccccccc
Confidence 677899999999 8999999986533
No 226
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.42 E-value=1e-06 Score=84.56 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEE--cCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 28 LAIPIVAGLKDKFEEATSRDDVKAIVLT--GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vvl~--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
++..+.+++.+.|..++.++..+.|+|. +.|+ ++. ....++ +.|..+++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v~----------------~~~~i~-~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DVF----------------AGMAIY-DTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cHH----------------HHHHHH-HHHHhcCCCceEEE
Confidence 5678899999999999988777777763 3332 221 122455 66888999999999
Q ss_pred CCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhh------------------hhcccc--CHHHHHHHH
Q 004726 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLV--GLSKAIEMM 163 (733)
Q Consensus 106 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~--G~~~a~~l~ 163 (733)
.|.|.++|.-++++|| .|++.++++|.+....-+. .|... .+.+.- ......+++
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 142 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADL 142 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999 6888888888754332121 11110 111112 244555667
Q ss_pred HcCCCCCHHHHHHcCCccEE
Q 004726 164 LLSKSITSEEGWKLGLIDAV 183 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~v 183 (733)
-.+..++|+||++.||||++
T Consensus 143 ~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 143 ERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred cCCccccHHHHHHcCCCCcC
Confidence 77888899999999999975
No 227
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.36 E-value=1.1e-05 Score=83.06 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=115.7
Q ss_pred CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCCCCEEEEeccCChHHHHHHHHHHH
Q 004726 332 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE 410 (733)
Q Consensus 332 ~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~ 410 (733)
++|++++|++++++...+. ++ +..+.+. +.+.+||+||.||+ ++...+++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 6899999999887654221 11 2223333 55688999999998 777888889888
Q ss_pred HhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004726 411 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNC 489 (733)
Q Consensus 411 ~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~ 489 (733)
..+.++.+|+|.+.++++..+...+....+++.+.|+.|......+..+ .++.++++..+.+..++..+|....+ .+.
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E~ 143 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PEA 143 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CHH
Confidence 7777778899999999999998888655578899998887776655554 56778889999999999999976644 321
Q ss_pred --CCcch-----hhhhHHHHHHHH--HHHHcCCCHHHHHHHH
Q 004726 490 --TGFAV-----NRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (733)
Q Consensus 490 --pGfi~-----nRl~~~~~~Ea~--~l~~~Gv~~~dID~a~ 522 (733)
..+.+ .-+++.+ -|++ ..+..|+++++-.+++
T Consensus 144 ~~~~~talsgsgPA~~~~~-~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 144 LMDAVTALSGSGPAYVFLF-IEALADAGVKQGLPRELALELA 184 (245)
T ss_pred HcchHHhhccCcHHHHHHH-HHHHHHHHHHcCCCHHHHHHHH
Confidence 11111 1112222 2322 3456689988888776
No 228
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.36 E-value=1.3e-06 Score=93.21 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=76.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHh---CHHHHHHHHHHHHHHhCC-CC
Q 004726 619 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FF 694 (733)
Q Consensus 619 ~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~---G~d~~~~~~~~~~~~~~~-~~ 694 (733)
.++++.||++.++++||+.++++|++ |+++||.++..|+|+|...-|||++.|.. |++........+....++ .+
T Consensus 185 ~~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~ 263 (308)
T PRK06129 185 IDGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERG 263 (308)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccC
Confidence 35789999999999999999999999 89999999999999883334999999987 899999888888888765 78
Q ss_pred CCCHHHHHHHH
Q 004726 695 KPSRFLEERAT 705 (733)
Q Consensus 695 ~p~~~l~~~~~ 705 (733)
.|+|+++++++
T Consensus 264 ~~~~~~~~~~~ 274 (308)
T PRK06129 264 QPVPWDGELVA 274 (308)
T ss_pred CCchhhHHHHH
Confidence 89999999887
No 229
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.31 E-value=1.1e-05 Score=79.79 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=96.6
Q ss_pred cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc-CccccCCCCEEEEeccCC
Q 004726 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEFKDVDMVIEAVIES 398 (733)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l~~aDlVI~avpe~ 398 (733)
|+.||..++.+||+|++.|.|.+-.+.. .+++.-+. .+..++ |.++++.+.+.|+-.|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedA-------------GV~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDA-------------GVEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhc-------------CcEEecCchhhhhcceEEEEecccc
Confidence 7889999999999999999987765542 11221222 244444 458899999999999843
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHh----cccCCCCcEEEEecCCCCCCC----CeeEEecCCCC------
Q 004726 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----EKTSSQDRIIGAHFFSPAHVM----PLLEIVRTERT------ 464 (733)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~~~~~~ig~h~~~p~~~~----~lveiv~~~~t------ 464 (733)
. ..-.+.++|.++++.+++|+ ||.+.++-.+- ..+..+.+-+|+..+.|.-+- ...-++.+..+
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA 171 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA 171 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence 2 34466788999999999886 45554443333 334444444555544443210 11123443333
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEc
Q 004726 465 SAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+++.++++.++++..||.++++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 78999999999999999998874
No 230
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.31 E-value=5.6e-06 Score=77.47 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=63.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||.|..|.+.|++|..+|++|++-.+..+ ..+++. +. .....+..++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~-------------Gf~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------AD-------------GFEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HT-------------T-ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HC-------------CCeeccHHHHHhh
Confidence 6899999999999999999999999999988776 444432 22 2333333478899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
+|+|+..+| -++-.++| ++|.+.++++.++.- +.++.+
T Consensus 61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 999999999 55556777 789999999998753 444444
No 231
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.28 E-value=1.9e-06 Score=85.53 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=72.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC---hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc--
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 382 (733)
.||+|||+|.||+.+|..|++.|+ +|+++|.+ ++.+.+-.- ..-+.|.-..+.....+.++....+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-------~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-------KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-------ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999999 79999999 655544210 00112222233333344443332222
Q ss_pred -----------cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 383 -----------~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+.++++|+||+| .++++.|..++.++....+...+++
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 246789999999 6999999999999988877766665
No 232
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.28 E-value=2e-06 Score=89.69 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=63.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|||.|.||.++|.+|...|++|+++++.....+.+. ..| ....+-.+++++|
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~sl~Eaak~A 72 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVMSVSEAVRTA 72 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEECCHHHHHhcC
Confidence 5899999999999999999999999999987643322221 111 1222222678999
Q ss_pred CEEEEeccCChHHHHHHH-HHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIF-SELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~ 420 (733)
|+|+.++|. .+.. .++ .++.+.++++++++
T Consensus 73 DVV~llLPd-~~t~-~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 73 QVVQMLLPD-EQQA-HVYKAEVEENLREGQMLL 103 (335)
T ss_pred CEEEEeCCC-hHHH-HHHHHHHHhcCCCCCEEE
Confidence 999999996 4444 555 56888999999775
No 233
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.27 E-value=4.5e-06 Score=89.76 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=68.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||+++..... ...+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CEe-cCHHHHHhh
Confidence 58999999999999999999999999999998653211 0001 111 233 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+|+.++|...+.+.-+-++..+.++++++++ |++
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~a 240 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTA 240 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECc
Confidence 999999999888777776677888899999886 444
No 234
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.26 E-value=5.4e-06 Score=82.30 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
..++..+...+...+..++.++..+-|.| .+.| +|+. ....++ +.|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence 44788899999999998886644443443 3333 2221 122455 567788899999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhh------------------hhhccccC--HHHHHH
Q 004726 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~------------------~~l~r~~G--~~~a~~ 161 (733)
.+.|.|.+.|..++++++ .|++.+++++.+....-|. .|-+ ..+...-| .....+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999743 5666666666654432111 1111 11222223 345556
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
++-.+..++|+||++.||||+|+..
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeec
Confidence 6778889999999999999999854
No 235
>PRK07574 formate dehydrogenase; Provisional
Probab=98.19 E-value=1.4e-05 Score=87.10 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=68.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.|...|.+|+.||++....+... .. .+....++ +.+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------EL-------------GLTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hc-------------CceecCCHHHHhhc
Confidence 4799999999999999999999999999999863211100 00 11222234 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
||+|+.++|...+...-+=++..+.++++++++ |++.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aR 285 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTAR 285 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCC
Confidence 999999999888876665567788899999886 4553
No 236
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.17 E-value=1.3e-05 Score=84.65 Aligned_cols=134 Identities=12% Similarity=0.078 Sum_probs=86.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||++... . +. .....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~--~---------------~~------------~~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN--D---------------GI------------SSIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc--c---------------Cc------------ccccCCHHHHHhh
Confidence 58999999999999999888889999999987421 0 00 0001233 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccCC-CCcEEEEecCC--CC---CCCCeeEE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSS-QDRIIGAHFFS--PA---HVMPLLEI 458 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~-~~~~ig~h~~~--p~---~~~~lvei 458 (733)
||+|+.++|...+.+.-+-++..+.++++++++ |+|. +....+.+.+.. .....++..|. |. +..+.+-+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nvii 252 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVIL 252 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEE
Confidence 999999999888876666566777889999876 4543 333345454432 23334444332 21 23456667
Q ss_pred ecC-C-CCCHHHHHHH
Q 004726 459 VRT-E-RTSAQVILDL 472 (733)
Q Consensus 459 v~~-~-~t~~e~~~~~ 472 (733)
+|+ . .++++..+.+
T Consensus 253 TPHi~g~~t~e~~~~~ 268 (303)
T PRK06436 253 SPHVAGGMSGEIMQPA 268 (303)
T ss_pred CCccccccCHHHHHHH
Confidence 777 3 2455554443
No 237
>PLN03139 formate dehydrogenase; Provisional
Probab=98.17 E-value=1.7e-05 Score=86.33 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=87.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.||..+|+.+...|.+|++||++....+.. .+. .+....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KET-------------GAKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhc-------------CceecCCHHHHHhh
Confidence 589999999999999999999999999999875321111 000 12222344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC-CC--HHHHhcccC-CCCcEEEEecCC--C------CCCCCe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST-ID--LNIVGEKTS-SQDRIIGAHFFS--P------AHVMPL 455 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~-~~--~~~l~~~~~-~~~~~ig~h~~~--p------~~~~~l 455 (733)
||+|+.++|...+.+.-+-+++.+.++++++++ |++. -. -..+.+.+. ..-.-.++.-|. | -+.++.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pN 334 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPN 334 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCC
Confidence 999999999888877766677888899999876 5553 22 234444443 222333444332 2 234456
Q ss_pred eEEecCCC-CCHHHHH
Q 004726 456 LEIVRTER-TSAQVIL 470 (733)
Q Consensus 456 veiv~~~~-t~~e~~~ 470 (733)
+-++|+-. ++.+..+
T Consensus 335 vilTPHiag~t~~~~~ 350 (386)
T PLN03139 335 HAMTPHISGTTIDAQL 350 (386)
T ss_pred eEEcccccccCHHHHH
Confidence 66666532 2444433
No 238
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.12 E-value=1.2e-05 Score=75.19 Aligned_cols=99 Identities=23% Similarity=0.300 Sum_probs=67.2
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
.||+|||+ |.+|..+|..|...+. +++++|++++.++.-...+......... .......+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence 38999999 9999999999999875 8999999998666543333222111000 112223567899
Q ss_pred CCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 386 ~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
++||+||.+.-. +..+.+++..++.++.+. .+++.
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~-~~viv 116 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPD-AIVIV 116 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTT-SEEEE
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCc-cEEEE
Confidence 999999988821 344566666778888744 44443
No 239
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.12 E-value=2.1e-05 Score=83.63 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=77.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||++.+..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 589999999999999999999999999999876432100 000011223 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEEe
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAH 445 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~~~ig~h 445 (733)
||+|+.++|...+.+.-+-++....++++++++ |++ + +.-..+.+.+.. .-+-.++.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalD 251 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLD 251 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEec
Confidence 999999999999887777677888899999875 555 2 334455555432 22334444
No 240
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.09 E-value=0.0002 Score=77.92 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=108.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeE------EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~------~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
++|+|||.|.+|...|..|...|++|+ .+|.+.+.-+++. +.| ....+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence 589999999999999999999999999 4444444443331 112 2222223
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC----------CC
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV 452 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~----------~~ 452 (733)
++++.||+|+..+|+. ....+++++.+.+++++++.- +-+..+.......+....++-+-|-.|- .-
T Consensus 93 Ea~~~ADvVviLlPDt--~q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK--QHSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH--HHHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 6789999999999966 377788999999999998853 3344333221111122233333332222 11
Q ss_pred CCeeEEec-CCCCCHHHHHHHHHHHHHcCCe---eEEEc---C-CCCcchhh-hhHHHH-----HHHHHHHHcCCCHHHH
Q 004726 453 MPLLEIVR-TERTSAQVILDLMTVGKIIKKV---PVVVG---N-CTGFAVNR-AFFPYS-----QSARLLVSLGVDVFRI 518 (733)
Q Consensus 453 ~~lveiv~-~~~t~~e~~~~~~~l~~~lG~~---~v~v~---d-~pGfi~nR-l~~~~~-----~Ea~~l~~~Gv~~~dI 518 (733)
.|.+-.|- -...+-.+.+.+..+...+|.. ++... + ..-....| ++...+ .-.-.++++|.+|++-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 22222332 1345667889999999999976 22211 1 01122222 232222 1233577889988876
Q ss_pred HH
Q 004726 519 DS 520 (733)
Q Consensus 519 D~ 520 (733)
-.
T Consensus 250 ~k 251 (487)
T PRK05225 250 EK 251 (487)
T ss_pred HH
Confidence 54
No 241
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.07 E-value=4.6e-06 Score=79.46 Aligned_cols=117 Identities=11% Similarity=0.040 Sum_probs=70.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||+|.||.+++..|++.| ++|+++|+++++.+...+.+.. .. + .....+..+.+++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~ 81 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE 81 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence 57999999999999999999996 7899999999887664332110 00 0 0111122244789
Q ss_pred CCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEEEe
Q 004726 388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIGAH 445 (733)
Q Consensus 388 aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~-~~~~~ig~h 445 (733)
+|+||.|+|.... +....+. ...+++++++++.++....+.+.+... ...+++..|
T Consensus 82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGL 139 (155)
T ss_pred CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCH
Confidence 9999999996653 1111121 123577888776554433233433332 233444444
No 242
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.07 E-value=6.8e-06 Score=88.41 Aligned_cols=92 Identities=16% Similarity=0.035 Sum_probs=64.5
Q ss_pred ceEEEEcCCcCcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||.++|..|+ ..|.+|++||+++...... .+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---------------------------~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT---------------------------YVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh---------------------------hccccCCHHHHHH
Confidence 47999999999999999994 4688999999986532110 01123344 5678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
+||+|+.++|.......-+-.++.+.++++++++..+.+..
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~ 240 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSL 240 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcc
Confidence 99999999997766543222456677899998764444433
No 243
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.06 E-value=1.4e-05 Score=77.44 Aligned_cols=138 Identities=23% Similarity=0.278 Sum_probs=98.3
Q ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 17 IITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 17 ~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
.|.++.+ ++.....++...+..+..++..+.|+| .+.|+ |+. ....++ +.|
T Consensus 11 ~i~i~g~----I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~----------------~~~~i~-~~l 63 (171)
T cd07017 11 IIFLGGP----IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVT----------------AGLAIY-DTM 63 (171)
T ss_pred EEEEcCE----EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHH----------------HHHHHH-HHH
Confidence 3445444 678889999999999988766555555 33333 221 122444 557
Q ss_pred hcCCCcEEEEeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhhh-----------------hhccc--
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRL-- 153 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~~-----------------~l~r~-- 153 (733)
...+.|+++.+.|.|.++|.-++++|| .|++.+++.|.+.+...+.. +. ... .+...
T Consensus 64 ~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~-g~-~~~~~~~~~~l~~~~~~~~~~~~~~tg 141 (171)
T cd07017 64 QYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAG-GQ-ASDIEIQAKEILRLRRRLNEILAKHTG 141 (171)
T ss_pred HhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCC-CC-HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 778999999999999999999999999 89999999999887655432 21 111 11111
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCccEE
Q 004726 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183 (733)
Q Consensus 154 ~G~~~a~~l~ltG~~i~a~eA~~~Glv~~v 183 (733)
.......+++..+..++|+||+++|+||+|
T Consensus 142 ~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 142 QPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 233455567778999999999999999986
No 244
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.06 E-value=4.1e-05 Score=76.44 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=97.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
..++..+..++...|..++..+..+.|.| .+-| +++. ....++ +.|..++.|+++
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 98 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVT----------------AGDAIY-DTIQFIRPDVQT 98 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHH----------------HHHHHH-HHHHhcCCCcEE
Confidence 45889999999999999987654444444 3333 2322 122455 667888899999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeCccccC-CCCCChhhh------------------hhhcccc--CHHHHH
Q 004726 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLV--GLSKAI 160 (733)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~-Gl~P~~g~~------------------~~l~r~~--G~~~a~ 160 (733)
.+.|.|.+.|.-++++|| .|++.+++.|.+..... |- ..|-. ..+...- ......
T Consensus 99 ~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~ 176 (207)
T PRK12553 99 VCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR 176 (207)
T ss_pred EEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999 69999999998876543 21 12211 1122222 335556
Q ss_pred HHHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 161 EMMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 161 ~l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
+++-.+..++|+||++.||||+|++.
T Consensus 177 ~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 177 KDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHhcCccccHHHHHHcCCccEEcCc
Confidence 67778999999999999999999853
No 245
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.05 E-value=9.7e-06 Score=86.42 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=67.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|+++|..|+..| ++|+++|++++.++.....+....... ... ..+. +.+++.++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~-~~~-----------~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL-PSP-----------VKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc-CCC-----------eEEE-cCCHHHhC
Confidence 38999999999999999999999 589999999988765543332211000 000 0122 34557789
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 387 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+||+||.++.. +..+.+++..++.++++. ++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~-~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFD-GIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999999853 344566667778887764 4443
No 246
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.02 E-value=2.7e-05 Score=82.93 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=73.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|||+|.||+-+|..|+++|++|++++|+++.++...+. +.+. ....|... . -.+. ..+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl~-i~~~g~~~------~-~~~~-~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGLT-LVEQGQAS------L-YAIP-AETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCeE-EeeCCcce------e-eccC-CCCccccccc
Confidence 379999999999999999999999999999988776654210 0000 00011000 0 0011 1111335678
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS 436 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~ 436 (733)
|+||.|+- ..-..+.++.+.+.+.++++|++.-.++... .+...+.
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 99999995 3334567788999999999887766666554 3444443
No 247
>PRK15076 alpha-galactosidase; Provisional
Probab=98.02 E-value=2.1e-05 Score=87.28 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=55.0
Q ss_pred ceEEEEcCCcCcHHHHH--HHH----HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~--~l~----~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...++..+... + ...++..++|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 58999999999966655 333 246799999999999887655544443322 1 01357778884
Q ss_pred -cccCCCCEEEEecc
Q 004726 383 -SEFKDVDMVIEAVI 396 (733)
Q Consensus 383 -~~l~~aDlVI~avp 396 (733)
+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 88999999999983
No 248
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.01 E-value=0.00011 Score=75.43 Aligned_cols=151 Identities=12% Similarity=0.019 Sum_probs=103.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-c-ccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-~l~ 386 (733)
.+|||||.|.||.=+|..+.++|+.|.+.||++ -+.+.+.+ +.-. .+++ + +-+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y----------------------g~~~-ft~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY----------------------GSAK-FTLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh----------------------cccc-cccHHHHHhc
Confidence 479999999999999999999999999999987 22222211 1111 1222 1 236
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHh-CCCCeEEEecCCCCC--HHHHhcccCCCCcEEEEecCCCCC------C-CCee
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH------V-MPLL 456 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~~~~~ig~h~~~p~~------~-~~lv 456 (733)
..|+|+.|+. ..-...+++..-.. ++.++++...+|... .+...+.++..-.++..|++..|. . .|+|
T Consensus 108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 7899999996 55555555554444 567899988777543 334445555566789999976664 1 2444
Q ss_pred EEec---CCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004726 457 EIVR---TERTSAQVILDLMTVGKIIKKVPVVV 486 (733)
Q Consensus 457 eiv~---~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (733)
-+-. .....+|..+.+.+++...|+..|.+
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 3321 22345899999999999999998887
No 249
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.00 E-value=5.8e-05 Score=80.46 Aligned_cols=163 Identities=21% Similarity=0.285 Sum_probs=104.2
Q ss_pred cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 14 ~i~~i~l~~p-~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
.|++|.++.+ . .+.+..--.+.+.+.++.+..|+.+++|||.=. |-|+.... .....+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence 5888888655 1 122222246788888999999999999999521 11111110 11122333
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh-hh-------------------
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ-RL------------------- 150 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~-~l------------------- 150 (733)
+++..-. ||++.|++.|..||..++++||.++|+++|..|-..+..+. |...... .+
T Consensus 123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~ 199 (317)
T COG0616 123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPF 199 (317)
T ss_pred -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcc
Confidence 3344444 99999999999999999999999999999999877665542 2221110 00
Q ss_pred ---------------------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHH
Q 004726 151 ---------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (733)
Q Consensus 151 ---------------------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (733)
..+-.......-+.+|+.+++++|++.||||++...++....+...
T Consensus 200 ~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 200 RPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 0000111123346799999999999999999998766555444443
No 250
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.98 E-value=3.6e-05 Score=82.04 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=82.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeC-ChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~-~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|||||+|.+|+.+|..+..-|.+|.+||+ .....+.. .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 5899999999999999999999999999999 33322210 112223344 5689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccCCC-CcEEEEecCC--------CCCCCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTSSQ-DRIIGAHFFS--------PAHVMP 454 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~~~-~~~ig~h~~~--------p~~~~~ 454 (733)
.||+|+..+|...+.+.-+=++....+++++++ .|++- +.-..+.+.+... -+-.++..|. |.+..+
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gail-IN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~p 275 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAIL-INAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLP 275 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEE-EECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCC
Confidence 999999999988886555556677788999976 47763 3334455544322 2323444332 233445
Q ss_pred eeEEecC
Q 004726 455 LLEIVRT 461 (733)
Q Consensus 455 lveiv~~ 461 (733)
.|.++|+
T Consensus 276 nV~~TPH 282 (324)
T COG0111 276 NVILTPH 282 (324)
T ss_pred CeEECCc
Confidence 5666664
No 251
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.97 E-value=7.4e-05 Score=78.98 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=99.1
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 12 ~~~i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
.+.|++|.++.+ ..+. ...+.+++...++.+..+ .+|||.=.. .|+..... ......+
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s-------------~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGY-------------GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHH-------------HHHHHHH
Confidence 357999999876 2221 123456666666555433 467775321 12211110 0011123
Q ss_pred HHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhh----------------------
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ---------------------- 148 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~---------------------- 148 (733)
.++....||+++.+.+.|..||..++++||.++|.+.+.+|...+-.. .|......
T Consensus 148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 357778999999999999999999999999999999999887666322 12211100
Q ss_pred ---------hhcc-----------cc--CH-HHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHH
Q 004726 149 ---------RLPR-----------LV--GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 194 (733)
Q Consensus 149 ---------~l~r-----------~~--G~-~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~ 194 (733)
.+.. .| ++ ....+-+.+|+.+++++|++.||||++...+++...+.
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 0000 00 00 11223456899999999999999999998777755443
No 252
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.97 E-value=0.00082 Score=71.43 Aligned_cols=166 Identities=14% Similarity=0.087 Sum_probs=97.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||+|+|+|.||+-++..|+++|++|+++-|++. +++..+ +|..-.............+.+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence 3799999999999999999999988888888775 444322 2211000000000112223334667799
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEEEecCCCCCCCCeeE-------Eec
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLE-------IVR 460 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~-l~~~~~~~~~~ig~h~~~p~~~~~lve-------iv~ 460 (733)
|+||.++- .-...++++.+.+.++++++|++.-.++...+ +.+......-+.|+-+.......+..- +.-
T Consensus 69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 99999985 55566888999999999987776566655544 444433332233443332222222111 111
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004726 461 T--ERTSAQVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 461 ~--~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (733)
+ ....++.++.+.+.++..|-...+..|
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 1 111336677777777666655554433
No 253
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.97 E-value=0.00019 Score=73.54 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-.+.....++.+.+. .+-+|-|.-.++++. |.+-+ .........+.+ ..+....+|+|++|
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE----------~~G~~~~ia~~~-~~~s~~~VP~IsVI 143 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE----------ERGQGEAIARNL-MEMSDLKVPIIAII 143 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH----------hccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 567788888888888888754 456666654333332 33211 011122233444 45778899999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||......||++++.+++.++. +-|.++.+..+...--...+.+.+ .+++.++++.|+||+|+|
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP 213 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence 9999999888888999999999988874 223333333333221112223333 779999999999999996
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
+
T Consensus 214 e 214 (256)
T PRK12319 214 E 214 (256)
T ss_pred C
Confidence 4
No 254
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.96 E-value=3.8e-05 Score=87.76 Aligned_cols=130 Identities=16% Similarity=0.081 Sum_probs=82.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|++|++||+.... +... +.| +...+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 58999999999999999999999999999985321 1110 001 2222334 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEEecC--CC-----CCCCCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~~~ig~h~~--~p-----~~~~~lve 457 (733)
||+|+.++|...+.+.-+=++..+.++++++++..+-+ +.-..+.+.+.. .-...++..| .| .+..+-|.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 273 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI 273 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence 99999999987776555545666788999987643333 333455554432 2233444433 22 23335566
Q ss_pred EecCCC
Q 004726 458 IVRTER 463 (733)
Q Consensus 458 iv~~~~ 463 (733)
++|+-.
T Consensus 274 ~TPHia 279 (525)
T TIGR01327 274 ATPHLG 279 (525)
T ss_pred ECCCcc
Confidence 666533
No 255
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.89 E-value=3.1e-05 Score=82.42 Aligned_cols=98 Identities=23% Similarity=0.276 Sum_probs=66.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
.||+|||+|.+|.++|..++..|. +++++|++++.++.....+.... ... ....+..+.++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 489999999999999999999886 79999999876554332222110 000 001455567888899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEE
Q 004726 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 387 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+||+||.+.-. +..+.+++.+++.++.+.+.++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 99999997621 2334556666788886555443
No 256
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.88 E-value=2.5e-05 Score=83.29 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=66.7
Q ss_pred eEEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.+|.++|..|+..| .+|+++|+++++++.....+. ....... .....+++++++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~-------~~~~~~~-------~~~i~~~d~~~l~~ 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLA-------HGTPFVK-------PVRIYAGDYADCKG 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHH-------ccccccC-------CeEEeeCCHHHhCC
Confidence 7999999999999999999999 589999999887653221111 1000000 01122456788999
Q ss_pred CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 388 aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||+||.+++. +..+.+++.+++.++.+.+.+++
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv 114 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9999999964 34456667777888776655443
No 257
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.87 E-value=5.5e-05 Score=71.70 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=70.2
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccc---cCc-ccc
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGV---LDY-SEF 385 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~---~~~-~~l 385 (733)
|+|+|+|.||.-+|..|+++|++|+++++++ .++...+ .|. ++... ....+... .+. +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~---~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPD---GDETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETT---EEEEEEEEEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecc---cceecccccccCcchhcc
Confidence 7899999999999999999999999999998 6555321 110 00000 00001111 111 246
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhccc
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKT 435 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~ 435 (733)
..+|+||.|+. ......+++.+.+++.+++.|++.-.++... .+.+..
T Consensus 66 ~~~D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 66 GPYDLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp STESEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred CCCcEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 78999999996 4344567888999999997777666666644 444444
No 258
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.85 E-value=0.00056 Score=73.37 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
.+++++-.+.....++.++.. .+-+|-|.-.++++ .|.+-++. .......+.+ ..+..+.+|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 468899999999988888765 45566664333333 33332221 0112222344 45788999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.+.+||.....+||++++.+++.++. +-|.++++..+...--...|.+ .-.++|.++++.|+||+|+|
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence 9999666655555789999999988764 2245555555544322233333 33899999999999999996
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
+
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 3
No 259
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.85 E-value=1.3e-05 Score=78.28 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=69.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|+.||++........ . .... ..++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGVE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTEE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccce-eeehhhhcch
Confidence 5899999999999999999999999999999987644110 0 0111 2234 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 436 (733)
||+|+.++|-..+...-+=++..+.++++++++ |++ + +.-..+.+.+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEE-eccchhhhhhhHHHHHHh
Confidence 999999999766654444456677889999886 454 3 33345555543
No 260
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.84 E-value=7.9e-05 Score=85.22 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=82.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|..+...|++|++||++... +.. ...+ +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEE-cHHHHHhh
Confidence 58999999999999999999999999999986432 111 0011 1222 33 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEEecC--CC-----CCCCCeeE
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLLE 457 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~~~ig~h~~--~p-----~~~~~lve 457 (733)
||+|+.++|...+.+.-+-++..+.++++++++..+-+ +.-..+.+.+.. .-.-.++..| .| .+..+-|.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 99999999987776665546777888999988643333 333355454432 2233344433 22 23335566
Q ss_pred EecCCC
Q 004726 458 IVRTER 463 (733)
Q Consensus 458 iv~~~~ 463 (733)
++|+-.
T Consensus 275 lTPHia 280 (526)
T PRK13581 275 VTPHLG 280 (526)
T ss_pred EcCccc
Confidence 677543
No 261
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.83 E-value=0.00014 Score=71.85 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.+++.+...+...|..++..+..+.|.| .+-| +++. ....++ +.|...+.||++.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~----------------ag~aI~-d~i~~~~~~V~t~ 87 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYIDSEG------GDID----------------AGFAIF-NMIRFVKPKVFTI 87 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC------CCHH----------------HHHHHH-HHHHhCCCCEEEE
Confidence 4778889999999988876333344444 3333 3322 122455 6678899999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhh------------------hhccccC--HHHHHHH
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~G--~~~a~~l 162 (733)
+.|.|.+.|.-++++||- |++.++++|.+-...-++. |.+. .+...-| .....++
T Consensus 88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~ 164 (197)
T PRK14512 88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKD 164 (197)
T ss_pred EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHh
Confidence 999999999999999985 9999999987654432221 1111 0111112 2445556
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCc-chH
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTS-EEL 189 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~-~~l 189 (733)
+-....++|+||+++||||+|++. +++
T Consensus 165 ~~~d~~lta~EA~~yGliD~I~~~~~~l 192 (197)
T PRK14512 165 TDRDFWLDSSSAVKYGLVFEVVETRLEL 192 (197)
T ss_pred hhcCcccCHHHHHHcCCccEeecCcHHh
Confidence 667788999999999999999964 444
No 262
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.83 E-value=0.00044 Score=72.45 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-.++++-.+.....++.++.. .+-+|-|--.+++++ |.+-.+. .......+.+ ..+....+|+|++|
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~----------G~~~aiar~l-~~~a~~~VP~IsVV 199 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL----------GQGEAIAVNL-REMFSFEVPIICTI 199 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH----------hHHHHHHHHH-HHHHcCCCCEEEEE
Confidence 567788999999988888765 455666643333443 3322111 0112222333 34678999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||.-....||++++.+++.|+. +-|.++++.++.. ..+|.+ +...-+++|++.+++|+||+|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 9999888865555699999999998874 2345555544443 234443 33456899999999999999996
No 263
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.80 E-value=4.8e-05 Score=80.78 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=67.3
Q ss_pred EEEEcCCcCcHHHHHHHHHCC--CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G--~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
|+|||+|.+|+++|..++..| .+++++|++++.++.....+....... . ...+..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999988765444333221110 0 0134434567899999
Q ss_pred CEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
|+||.++.- +..+.+++..++.+++ ++++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999999842 3445666777788888 444443
No 264
>PLN02602 lactate dehydrogenase
Probab=97.79 E-value=4.9e-05 Score=81.88 Aligned_cols=96 Identities=27% Similarity=0.369 Sum_probs=66.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHh--hccccccCccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~ 384 (733)
+||+|||+|.+|+++|..++..|. +++++|++++.++...-.+.... ..+ ..+..+.++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~---------------~~~~~~~i~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA---------------AFLPRTKILASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh---------------hcCCCCEEEeCCCHHH
Confidence 599999999999999999998886 79999999877654333222111 011 13433457788
Q ss_pred cCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEE
Q 004726 385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 385 l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+++||+||.+.-. +..+.+++..++.++++...++
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi 151 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999998621 3345556667788776655433
No 265
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.78 E-value=0.00033 Score=69.29 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=96.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
..++.++..++...+-.++.++..+-|.+ .+.|+ |+. ....++ +.+...+.||..
T Consensus 37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG------~v~----------------~g~aIy-d~m~~~~~~V~T 93 (200)
T CHL00028 37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGG------SVI----------------SGLAIY-DTMQFVKPDVHT 93 (200)
T ss_pred CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCc------chh----------------hHHHHH-HHHHhcCCCEEE
Confidence 34899999999999999875544344433 34432 221 122555 668889999999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhh-h-----------------hhccccC--HHHHHH
Q 004726 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLVG--LSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~-~-----------------~l~r~~G--~~~a~~ 161 (733)
.+-|.|.+.|.-|++++| .|++.++++|.+-...-|.. .|-+ . .+...-| .....+
T Consensus 94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~ 171 (200)
T CHL00028 94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE 171 (200)
T ss_pred EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999999 69999999998877654421 2211 1 1111222 234456
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
++-....++|+||+++||||+|+.+
T Consensus 172 ~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 172 DMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HhhcCccCCHHHHHHcCCCcEEeec
Confidence 6677788999999999999999854
No 266
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.78 E-value=5.6e-05 Score=80.67 Aligned_cols=97 Identities=24% Similarity=0.273 Sum_probs=66.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|..+|..++..|. +++++|++++.++...-.+....... .. -.+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~--~~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT--SP-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc--CC-----------eEEE-eCCHHHhC
Confidence 489999999999999999999998 89999999887665433332221000 00 1232 45678899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 387 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+||+||.+.-. +..+.+++..++.++.+. ++++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~-~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFD-GIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999987731 344556666677777654 4443
No 267
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00014 Score=72.63 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=112.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC----eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
+|++||+|.|..+++..+.++|. +++.+-.+......- .... +.-.+.++.+.+
T Consensus 2 ~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~------------g~~~~~~n~~~~ 59 (267)
T KOG3124|consen 2 KVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEAL------------GVKTVFTNLEVL 59 (267)
T ss_pred ceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcC------------CceeeechHHHH
Confidence 68999999999999999999986 444444422221110 0111 222233345778
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEe-cCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERT 464 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv-~~~~t 464 (733)
+.+|++++++- +.+...++.++...+..+.|++|..-+.+++.+...+..+.|++...++.|..+.....+. .+...
T Consensus 60 ~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~ 137 (267)
T KOG3124|consen 60 QASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHA 137 (267)
T ss_pred hhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCc
Confidence 89999999995 7888888888777677788999999999999999888877899999999999888777744 57777
Q ss_pred CHHHHHHHHHHHHHcCCe
Q 004726 465 SAQVILDLMTVGKIIKKV 482 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~ 482 (733)
..+..+.+.+++...|..
T Consensus 138 ~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 138 TNEDLELVEELLSAVGLC 155 (267)
T ss_pred chhhHHHHHHHHHhcCcc
Confidence 778789999999999953
No 268
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.76 E-value=3.6e-05 Score=75.53 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=93.8
Q ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 17 IITLINPPVNALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 17 ~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
+|.|+.| ++.++...+.+.|..+++++..+- |.|.+. |+|+.. ...++ +.|
T Consensus 18 ~i~l~g~----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i 70 (182)
T PF00574_consen 18 IIFLNGP----IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAI 70 (182)
T ss_dssp EEEEESS----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHH
T ss_pred EEEECCc----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHH
Confidence 3455555 889999999998888853332222 223443 333321 22555 678
Q ss_pred hcCCCcEEEEeCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhh---------------hhhccc--cC
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRL--VG 155 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~---------------~~l~r~--~G 155 (733)
..++.|+++.+.|.|.+.|.-++++|+. |++.+++.|.+-+...+......-. ..+... ..
T Consensus 71 ~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~ 150 (182)
T PF00574_consen 71 RSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLS 150 (182)
T ss_dssp HHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8899999999999999999999999999 8999999999988865542201110 011111 12
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
.....+++-....++|+||+++|+||+|+.
T Consensus 151 ~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 151 KEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 344445566677889999999999999975
No 269
>PLN02928 oxidoreductase family protein
Probab=97.75 E-value=0.00016 Score=78.27 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=76.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||..+|+.+...|.+|++||++........ +. ..... ............++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------~~--~~~~~-----~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------LL--IPNGD-----VDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------hc--ccccc-----ccccccccCcccCHHHHHhh
Confidence 5899999999999999999999999999999743211100 00 00000 00000000011233 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~~~ig~h~~ 447 (733)
||+|+.++|-..+...-+-++..+.++++++|+ |++ + +.-..+.+.+.. .-...++..|
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-NvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-NIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 999999999887765555566777889999886 454 3 333455555432 2233444443
No 270
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.73 E-value=6e-05 Score=78.62 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.4
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 589999996 9999999999999999999987643221 34578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.|++....+...+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998654443332 78999887644
No 271
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.72 E-value=0.0013 Score=69.03 Aligned_cols=138 Identities=18% Similarity=0.126 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-.+.....++.++.- .+-+|-|.-.+++++ |.+-++ ........+.+ ..+....+|+|++|
T Consensus 130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI 196 (319)
T PRK05724 130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 567888888888888888754 466666654444333 432221 01122233444 45788999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||......||++++.+++.|+ .++.-|.+..|-+- ..++.+..- ...+++.++++.|+||+|+|
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 999988877555569999999998876 33333444433332 233444333 56689999999999999996
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
+
T Consensus 267 E 267 (319)
T PRK05724 267 E 267 (319)
T ss_pred C
Confidence 3
No 272
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.71 E-value=0.0016 Score=68.34 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-.+.....++.++.- .+-+|-|.-.+++++ |.+-++.. ......+.+ ..+....+|+|++|
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV 196 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEERG----------QSEAIARNL-REMARLGVPVICTV 196 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 567788888888888888754 456666643333333 33322111 112222344 45778999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||......||++++.+++.++. +-|.++.+..+.. ..++.+..- -..++|.++++.|+||.|+|
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd---~~~a~~aae-~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKD---ASKAPKAAE-AMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccc---hhhHHHHHH-HccCCHHHHHHCCCCeEecc
Confidence 9999888775555799999999988773 2244444443333 122332222 36778999999999999996
No 273
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.70 E-value=0.00042 Score=68.30 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.++..+...+...+..++.++..+-|++ .+. |+|+. ....++ +.|...+.|+...
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~----------------~g~~I~-d~l~~~~~~v~t~ 90 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSIT----------------AGLAIY-DTMQFIKPDVSTI 90 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHH----------------HHHHHH-HHHHhcCCCEEEE
Confidence 3677888888888888886554444444 333 33321 122455 5577777788888
Q ss_pred eCCcccchhhHHhhhcC--EEEEeCCceEeCccccCCCCCChhhh---------------hhhccccC--HHHHHHHHHc
Q 004726 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLL 165 (733)
Q Consensus 105 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~~~Gl~P~~g~~---------------~~l~r~~G--~~~a~~l~lt 165 (733)
+-|.|.+.|.-+++++| .|++.++++|.+-+..-|......-. ..+.+.-| .....+++-.
T Consensus 91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 170 (191)
T TIGR00493 91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER 170 (191)
T ss_pred EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence 88999999998888665 69999999999866543321110000 01222223 3555667778
Q ss_pred CCCCCHHHHHHcCCccEEcC
Q 004726 166 SKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 166 G~~i~a~eA~~~Glv~~vv~ 185 (733)
+..++|+||+++||||+|+.
T Consensus 171 ~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 171 DFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CccCcHHHHHHcCCccEEec
Confidence 89999999999999999974
No 274
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.69 E-value=8.9e-05 Score=78.98 Aligned_cols=108 Identities=23% Similarity=0.224 Sum_probs=69.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (733)
+||+|||+ |..|..+|..++..|+ +|+++|+++ +.++.....+. +.+...+. ..++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 38999998 9999999999999987 499999965 33332211111 11111110 01355566778
Q ss_pred ccCCCCEEEEecc--C----C-h-------HHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 384 EFKDVDMVIEAVI--E----S-V-------PLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 384 ~l~~aDlVI~avp--e----~-~-------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
++++||+||.++. . + . ++.+++...+.+.++ +.+++..++..++.
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~ 127 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVM 127 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHH
Confidence 8999999999994 1 1 1 445566667777775 55565566665543
No 275
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.67 E-value=0.00026 Score=75.42 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=75.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||.|.+|..+|+.+..-|.+|..||+.....+ .+ .. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 5899999999999999999989999999998632100 00 11 1133 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~~~ig~h~~ 447 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |++ + +.-..+.+.+.. +-. .++..|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999877765555566777889999885 555 2 334455555543 233 555554
No 276
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.66 E-value=0.002 Score=73.44 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
-+++++-++-....++.++.. .+-+|-|--.+++++ |.+.++.. ......+.+ ..+....+|+|++|
T Consensus 221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~G----------q~~aIArnl-~amasl~VP~ISVV 287 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNL-RTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHHh----------HHHHHHHHH-HHHhCCCCCEEEEE
Confidence 567788888888888888754 455666643333333 33322210 112233444 45778999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
-|.|.|||......||+++|.+++.++. +-|.++++..+... .+|.+ +...-.++|++.+++|+||.|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-AAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-AAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence 9999888887777899999999987663 23555554444432 22322 33456899999999999999997
Q ss_pred c
Q 004726 186 S 186 (733)
Q Consensus 186 ~ 186 (733)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 3
No 277
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.64 E-value=0.00012 Score=77.08 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=60.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||+|.||.++|..|...|.+|+++++++++.+.+. +.|. . .+. ..++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654431 1110 0 000 1122 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+|+||.++|...- -.+..+.+++++++++.+|
T Consensus 210 aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence 9999999984311 1233445677777765443
No 278
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.64 E-value=0.00014 Score=68.74 Aligned_cols=98 Identities=22% Similarity=0.273 Sum_probs=61.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+++.|+|.|..|+++|+.|...|.+|+++|+||-++-++. ++.....+-.++++.+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~------------------------~dGf~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA------------------------MDGFEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH------------------------HTT-EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh------------------------hcCcEecCHHHHHhhC
Confidence 4799999999999999999999999999999997654431 1223323222678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcc
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK 434 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~ 434 (733)
|++|.+.....-+..+.|+ .+++++|+++.++. +.+..+.+.
T Consensus 80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHHHH----HhcCCeEEeccCcCceeEeecccccc
Confidence 9999988654433444444 47899999765553 344444443
No 279
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.64 E-value=0.0012 Score=66.83 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.+.++.+..+++.++++....+..+- ++|.. -|+++.. ..++. +.+.+.+.|+++.
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~T------pGG~v~A----------------A~~I~-~~l~~~~~~v~v~ 124 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIHT------PGGLVDA----------------AEQIA-RALREHPAKVTVI 124 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceE-EEEEC------CCCcHHH----------------HHHHH-HHHHhCCCCEEEE
Confidence 46788888999999998887765553 33332 2333221 11344 5678899999999
Q ss_pred eCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhh
Q 004726 105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGG 146 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~ 146 (733)
|+..|+.+|.-++|+||-+++.+.+.+|--...+|-.|..+.
T Consensus 125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence 999999999999999999999999999999999998886543
No 280
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.63 E-value=8.6e-05 Score=76.85 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=78.8
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC--CC-----eeEEEeCChHHHHHHHHHHHHHHHHhHhcC-CCCHHHHHHHhhcccc
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKG 378 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~~~~i~~ 378 (733)
.-.||+|||.|+||++||+.+..+ ++ +|..|-..++.-.+ .+.+.+.+....+.- .+.. -.....+..
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~NvvA 95 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENVVA 95 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCeEe
Confidence 346899999999999999998865 22 67777665544332 111111111111111 1110 112235667
Q ss_pred ccCc-cccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 379 VLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
++|+ +++.+||++|.++| .+....++++|..++++++..+|.+.++..
T Consensus 96 v~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred cchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 7787 78899999999999 888899999999999999988887776654
No 281
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.62 E-value=0.00026 Score=78.33 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=70.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.+|..+|+.+..-|.+|+.||+.+.... .......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------~~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------GNARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc----------------------------CCceecCCHHHHHhh
Confidence 5899999999999999999999999999998642100 011122234 56899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
||+|+.++|-..+.+.-+=++....++++++++ |++. +.-..+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999877765555466777889999875 5552 33345544443
No 282
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.59 E-value=0.00018 Score=76.41 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=62.6
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
||+|||+|.+|.++|..++..|. +++++|++++.++.-...+.....-. ... --.+. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-~~~----------~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-YST----------NTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-CCC----------CEEEE-ECCHHHhCC
Confidence 69999999999999999999886 79999999877654322221110000 000 00233 456799999
Q ss_pred CCEEEEeccC------C----------hHHHHHHHHHHHHhCCCCeEEE
Q 004726 388 VDMVIEAVIE------S----------VPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 388 aDlVI~avpe------~----------~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||+||.+.-. + ..+.+++..++.++.+ +.+++
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~i 116 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVII 116 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 9999998731 1 2244445556666664 45444
No 283
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.56 E-value=0.00019 Score=75.33 Aligned_cols=99 Identities=25% Similarity=0.339 Sum_probs=65.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
+||+|||+|.+|+++|..|+..+. +++++|++++.++--.-.+..... ....-..+..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence 489999999999999999987764 899999996654432111111000 000001233324478999
Q ss_pred CCCEEEEec--c------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004726 387 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 387 ~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
++|+||.+. | .+..+.+++-+++.+.++ +.++.
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivl 115 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVL 115 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEE
Confidence 999999988 3 255577777778888877 44443
No 284
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.55 E-value=0.00046 Score=73.89 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=70.7
Q ss_pred ceEEEEcCCcCcHHHHHHHH-HCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|||||.|.||..+|+.+. .-|.+|..||+........ .. .+... ++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~-------------~~~~~-~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RF-------------NARYC-DLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hc-------------CcEec-CHHHHHH
Confidence 58999999999999999987 6789999999864221100 00 11122 33 5679
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
+||+|+.++|-..+.+.-+=++..+.++++++++ |++- +.-..+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888766555566777889999875 5652 33445555554
No 285
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.54 E-value=9.6e-05 Score=70.37 Aligned_cols=102 Identities=27% Similarity=0.354 Sum_probs=65.5
Q ss_pred HhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcccc------------CCC---------CCChh-----hh
Q 004726 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGV---------IPGFG-----GT 147 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl---------~P~~g-----~~ 147 (733)
.....|||+|.++|.|..++.-|+.+||-+++.+.+.++...+. +|+ .-..+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35689999999999999999999999999999999998876663 332 11111 00
Q ss_pred ----hhh-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCccEEcCcchHHHHHHHH
Q 004726 148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (733)
Q Consensus 148 ----~~l-----------------~r~~G~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (733)
..+ .|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 000 0111111 11225789999999999999999999877777665543
No 286
>PRK05442 malate dehydrogenase; Provisional
Probab=97.51 E-value=0.00016 Score=77.26 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=65.8
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChH--HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 377 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 377 (733)
..||+|||+ |.+|.++|..+...|. +++++|++++ +++.-.-.+..... .......
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 358999998 9999999999988765 7999999653 23221111111100 0001112
Q ss_pred c-ccCccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 378 G-VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 378 ~-~~~~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
. +.+++++++||+||.+.- .+..+.+++..+|.++.+++++++..|
T Consensus 70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2 456689999999998772 133456667777888887777765544
No 287
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.51 E-value=0.00047 Score=72.03 Aligned_cols=79 Identities=23% Similarity=0.194 Sum_probs=53.3
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHC--CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
+..||||||+|.||..++..+.+. +++|+ ++|+++++.+...+. ++.....+++
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------------------~g~~~~~~~~e 62 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------------------LRRPPPVVPLD 62 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------------------cCCCcccCCHH
Confidence 346899999999999999999874 78876 889998876543211 1111223334
Q ss_pred cccCCCCEEEEeccCChHHHHHHHHHH
Q 004726 383 SEFKDVDMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 383 ~~l~~aDlVI~avpe~~~~k~~v~~~l 409 (733)
+.+.++|+|++|+|.+. ..++..+.
T Consensus 63 ell~~~D~Vvi~tp~~~--h~e~~~~a 87 (271)
T PRK13302 63 QLATHADIVVEAAPASV--LRAIVEPV 87 (271)
T ss_pred HHhcCCCEEEECCCcHH--HHHHHHHH
Confidence 44578999999999443 34444443
No 288
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.49 E-value=0.00077 Score=67.09 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=35.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|+|+|+|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 479999999999999999999999999999998876654
No 289
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.49 E-value=0.00077 Score=71.97 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=74.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|+.||+.... . ...+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CREG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------cccc----------------cCCHHHHHHh
Confidence 58999999999999999999889999999975321 0 0000 1123 56889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~~-~~~~ig~h~~ 447 (733)
||+|+.++|-..+...-+=++..+.++++++++ |++ + +.-..+.+.+.. .-.-.++..|
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 999999999877765555566777889999885 555 2 344455555542 2233445443
No 290
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.49 E-value=0.00011 Score=80.03 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=70.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||+|.||+.+|+.+...|++|++||+.....+ + ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence 5799999999999999999999999999998543210 0 011 1223 55789
Q ss_pred CCEEEEeccCChH---HHHHHH-HHHHHhCCCCeEEEecCCC---CCHHHHhcccC-CCCcEEEEecC
Q 004726 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTST---IDLNIVGEKTS-SQDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~-~~~~~ig~h~~ 447 (733)
||+|+.++|-..+ ....++ ++....++++++++ |+|. +....+.+.+. ......++.-|
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 9999999996542 223344 44666789999875 5553 33334444443 22333445444
No 291
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.48 E-value=0.0048 Score=64.54 Aligned_cols=161 Identities=14% Similarity=0.158 Sum_probs=102.2
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 13 ~~i~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+.-..|.-|++. .-+++....+.+..+++.+... .+-+|.|...|+ +-+.+- . .....+.+ ....+
T Consensus 120 G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqEg--i---~sL~~~ak-~~~a~ 187 (292)
T PRK05654 120 GMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQEG--L---LSLMQMAK-TSAAL 187 (292)
T ss_pred CEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhhh--h---hHHHhHHH-HHHHH
Confidence 333445556663 5899999999999999998765 467777765443 222110 0 00001111 11222
Q ss_pred HHHHhcCCCcEEEEeCCcccchhh-HHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCC
Q 004726 91 VNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i 169 (733)
.++.....|.|+++.|+|.||+. ..++.+|+++|.+++.+++-..+ .+...+|. ++ .-+.-
T Consensus 188 -~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e----~l--pe~~~ 249 (292)
T PRK05654 188 -KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE----KL--PEGFQ 249 (292)
T ss_pred -HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh----hh--hhhhc
Confidence 23556789999999999999965 45778999999999888763221 11111111 00 11123
Q ss_pred CHHHHHHcCCccEEcCcchHHHHHHHHHHHHHcc
Q 004726 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (733)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~ 203 (733)
+++-+.+.|+||.|+++.++.....++.+.+...
T Consensus 250 ~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~ 283 (292)
T PRK05654 250 RAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQ 283 (292)
T ss_pred CHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcC
Confidence 6777889999999999999988887777765443
No 292
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.46 E-value=0.00058 Score=73.03 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=70.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|+.+..-|.+|+.||+..... . .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------------------cc-ccCHHHHHHh
Confidence 589999999999999999998999999999863210 0 00 0123 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-C--CCHHHHhcccC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS 436 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~ 436 (733)
||+|+.++|-..+.+.-+=++..+.++++++++ |++ + +.-..+.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999888766555567777889999885 565 3 33345555543
No 293
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.44 E-value=0.0005 Score=71.65 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=56.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCe-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.||+|||+|.||..++..+.+. +++ +.++|+++++.+...+. . .....+++ +.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~-------------~~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------T-------------GAKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------c-------------CCeeECCHHHH
Confidence 4899999999999999999876 455 55899998876653220 0 11223444 34
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEE
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii 419 (733)
+.++|+|++|+| .+...++..++.+. ..+.++
T Consensus 59 l~~~DvVvi~a~--~~~~~~~~~~al~~-Gk~Vvv 90 (265)
T PRK13304 59 VEDVDLVVECAS--VNAVEEVVPKSLEN-GKDVII 90 (265)
T ss_pred hcCCCEEEEcCC--hHHHHHHHHHHHHc-CCCEEE
Confidence 588999999998 55545555554432 344444
No 294
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.43 E-value=0.00033 Score=79.77 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=58.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHhCHH-HHHHHHHHHHH
Q 004726 618 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWSQ 688 (733)
Q Consensus 618 ~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~G~d-~~~~~~~~~~~ 688 (733)
..++++.||++.++++||+.++++|++ ++++||.++..|+|++...-|||+.+|..|.+ .+.+.++++..
T Consensus 182 ~~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~ 252 (495)
T PRK07531 182 EIDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP 252 (495)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhch
Confidence 357899999999999999999999999 89999999999998764445999999999854 45555555433
No 295
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.43 E-value=0.00048 Score=72.88 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=62.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
+||.|||.|.+|..++..|...|.+|+++|+++++.+.+.+ .|. + .+. ..++ +.+++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~---------~~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S---------PFH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e---------eec-HHHHHHHhCC
Confidence 58999999999999999999999999999999876544311 110 0 000 1122 45788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
+|+||.++|... +-++..+.++++++|++.++.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998321 223444567788888765554
No 296
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.43 E-value=0.0019 Score=64.57 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~v--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
..++..+...+...|..++..++-+-| .|.+-|+...+ ...++ +.+...+-||..
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a----------------------GlaIy-d~m~~~~~~V~t 117 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA----------------------GLGIY-DTMQFISSDVAT 117 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh----------------------HHHHH-HHHHhcCCCEEE
Confidence 357788888888877766643222222 22343332211 22455 668888999999
Q ss_pred EeCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhh------------------hhccccC--HHHHHH
Q 004726 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~G--~~~a~~ 161 (733)
.+-|.|.+.|.-|++++|. |++.+++++.+-...-|.. |-+. .+.+.-| .....+
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~---G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~ 194 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ---GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWA 194 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999996 9999999998766543321 2111 0112223 244455
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
++-....++|+||++.||||+|+..
T Consensus 195 ~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 195 DSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HhhcCccCCHHHHHHcCCccEEeec
Confidence 6677888999999999999999853
No 297
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.42 E-value=0.00026 Score=75.62 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=66.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 378 (733)
-||+|||+ |.+|.++|..|+..|. +++++|+++ +.++.-.-.+..... ........
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAF--------------PLLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccc--------------cccCCcEE
Confidence 38999998 9999999999998885 899999965 323321111111000 00011112
Q ss_pred -ccCccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 379 -VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 379 -~~~~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
+.+++++++||+||.+.- .+..+.+++..++.++++++++++..|
T Consensus 70 ~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 70 TTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred ecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 456789999999998772 134566777778888887677766544
No 298
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.0047 Score=64.27 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=122.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc----c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 383 (733)
...|+.||++.||..++.+.+.+|+.|.+|+|...+++..+.+-. +| ..|....++ .
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHHH
Confidence 357999999999999999999999999999999999887654211 11 012222222 2
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC-CCCHH--HHhcccCCCCcEEEEecC---CCCCCCCeeE
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLN--IVGEKTSSQDRIIGAHFF---SPAHVMPLLE 457 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~~~~~--~l~~~~~~~~~~ig~h~~---~p~~~~~lve 457 (733)
-++.--.||..|..... ...++++|.+++.++.||++... .++-+ ...+.....--|+|+-.- ..+..+| .
T Consensus 67 klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--S 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--S 143 (487)
T ss_pred hcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--c
Confidence 34566677777643322 45677899999999888876443 23322 111222233346665542 1112222 1
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-CCCcch----hhhh---HHHHHHHHHHHHc--CCCHHHHHH
Q 004726 458 IVRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS 520 (733)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d-~pGfi~----nRl~---~~~~~Ea~~l~~~--Gv~~~dID~ 520 (733)
++||. ++++-..++++++.+... ..++++ ..|-.+ |-+= +.++.|+..++.. |++-.+|..
T Consensus 144 lMpGg--~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPGG--SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCCC--ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 34553 788888888888766322 245554 334333 5442 4678899999987 579999988
Q ss_pred HHHhcC
Q 004726 521 AIRSFG 526 (733)
Q Consensus 521 a~~~~G 526 (733)
++..|.
T Consensus 222 vF~~WN 227 (487)
T KOG2653|consen 222 VFDDWN 227 (487)
T ss_pred HHHhhc
Confidence 885553
No 299
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.41 E-value=0.0014 Score=66.90 Aligned_cols=198 Identities=19% Similarity=0.234 Sum_probs=115.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHH----HHHHHHHhHhcCCCCHHHHHHHhhccccccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~----i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (733)
|.||+-||+|.+|++-...++.. ..+|+++|.+..++..=... .+..|++.+++ ..-..+-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999887766644 46899999999876542110 01122222221 11134667777
Q ss_pred c-cccCCCCEEEEecc-------------CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHH---hcccCCCCcEEEE
Q 004726 382 Y-SEFKDVDMVIEAVI-------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV---GEKTSSQDRIIGA 444 (733)
Q Consensus 382 ~-~~l~~aDlVI~avp-------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l---~~~~~~~~~~ig~ 444 (733)
. .+++++|+|+.+|- .|+......-+.|......+.|++ ..|+.|+... ...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 7 67899999999983 255555666666777777777764 5677776532 222222111 34
Q ss_pred ec------------------CCCCCCCCeeEEecCCCCCH--HHHHHHHHHHHHcCC-eeEEE-c----CCCCcchhhhh
Q 004726 445 HF------------------FSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIKK-VPVVV-G----NCTGFAVNRAF 498 (733)
Q Consensus 445 h~------------------~~p~~~~~lveiv~~~~t~~--e~~~~~~~l~~~lG~-~~v~v-~----d~pGfi~nRl~ 498 (733)
|| +||-.. ++.|..|.+ .+++.+..+++.+-. .-+.+ + +...+.+|-++
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl 223 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL 223 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence 43 343332 677776643 566667777776542 22322 2 33334445443
Q ss_pred HH---HHHHHHHHHHc-CCCHHHHHHHH
Q 004726 499 FP---YSQSARLLVSL-GVDVFRIDSAI 522 (733)
Q Consensus 499 ~~---~~~Ea~~l~~~-Gv~~~dID~a~ 522 (733)
.. -+|....+.+. |.++.++..++
T Consensus 224 aqrissins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 224 AQRISSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHHHhhhHHHHHHHHhcCCCHHHHHHHh
Confidence 22 23433334444 88999988876
No 300
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.34 E-value=0.00086 Score=74.08 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=69.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHC-------CC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc-
Q 004726 309 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~- 377 (733)
-||+|||+ |.+|.++|..|+.. |+ +++++|++++.++.-.-.+...... .+..+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~--------------~~~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP--------------LLREVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh--------------hcCceEE
Confidence 48999999 99999999999988 65 8999999999876543333222110 111233
Q ss_pred cccCccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 378 ~~~~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
.+.+++++++||+||.+.-- +..+.+++...|.++..++++++..+
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 24567999999999988721 34456666667777556677665444
No 301
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.33 E-value=0.00049 Score=73.07 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=63.2
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-c-cC--c
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 382 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 382 (733)
||+|||+ |.+|+++|..|+..++ +++++|+++ ....+.+ +.+.. ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D---------L~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD---------LSHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch---------hhcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 2111111 11111 0012332 2 23 6
Q ss_pred cccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 383 ~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+++++||+||.+.- .+..+.+++.+++.++. ++++++..|.
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsN 117 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITN 117 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 89999999998872 24556667777788775 5555543333
No 302
>PLN00106 malate dehydrogenase
Probab=97.33 E-value=0.00047 Score=73.51 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=61.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccC---
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD--- 381 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 381 (733)
.||+|||+ |.+|+.+|..|+..+. +++++|+++ ....+.+ + .+.. . .-.+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D-l--------~~~~-------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD-V--------SHIN-------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEch-h--------hhCC-------c-CceEEEEeCCCCH
Confidence 48999999 9999999999998775 899999988 1111111 0 0000 0 002221 223
Q ss_pred ccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 382 ~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
++++++||+||.+.- .+..+.+++.+.+.++.+ +.+++.
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aiviv 133 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNI 133 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEE
Confidence 478999999998772 355566777777887774 455443
No 303
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.32 E-value=0.0023 Score=63.11 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.++.++..++...|..++.++..+-|.+ -+.|+ |+.. ...++ +.+...+.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG------~v~~----------------g~aIy-d~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGG------SVYD----------------GLGIF-DTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc------chhh----------------HHHHH-HHHHhcCCCEEEE
Confidence 4889999999999999986543343333 34332 2211 22455 6688889999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhh------------------hhccccC--HHHHHHH
Q 004726 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (733)
Q Consensus 105 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~------------------~l~r~~G--~~~a~~l 162 (733)
+-|.|.+.|.-|++++|- |++.+++++..-...-|. .|.+. .+.+.-| .....++
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~ 166 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA---RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQED 166 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999985 889999999876654332 12110 1122223 2344556
Q ss_pred HHcCCCCCHHHHHHcCCccEEcCc
Q 004726 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 163 ~ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
+-....++|+||++.||||+|++.
T Consensus 167 ~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 167 TDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred hhcCcCCCHHHHHHcCCCcEEecc
Confidence 667788999999999999999865
No 304
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.30 E-value=0.0023 Score=63.23 Aligned_cols=136 Identities=19% Similarity=0.300 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEE
Q 004726 26 NALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (733)
Q Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Ia 103 (733)
-.++.++...+...+-.++.++.-+- |-|.+.|+ |+. .+..++ +.+...+-||..
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG------~v~----------------~GlaIy-d~m~~~~~~V~T 90 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGG------EVY----------------AGLAIY-DTMRYIKAPVST 90 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC------chh----------------hHHHHH-HHHHhcCCCEEE
Confidence 45888888888888888875433222 22344432 221 122556 668889999999
Q ss_pred EeCCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhhh------------------hccccC--HHHHHH
Q 004726 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLVG--LSKAIE 161 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~~------------------l~r~~G--~~~a~~ 161 (733)
.+.|.|.+.|.-|++++|- |++.++|++-+....-|. .|.+.- +.+.-| ...-.+
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~---~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF---RGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999995 999999999886665443 222111 122223 234445
Q ss_pred HHHcCCCCCHHHHHHcCCccEEcCcc
Q 004726 162 MMLLSKSITSEEGWKLGLIDAVVTSE 187 (733)
Q Consensus 162 l~ltG~~i~a~eA~~~Glv~~vv~~~ 187 (733)
++-....++|+||++.||||+|+++.
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEeccC
Confidence 66677889999999999999998653
No 305
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.30 E-value=0.00096 Score=64.84 Aligned_cols=95 Identities=21% Similarity=0.287 Sum_probs=60.2
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh---HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC----
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD---- 381 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~---- 381 (733)
||.|||+|.||+.++..|++.|. +++++|.+. +.+.+..- .. -+-|.-..+.....+.++....+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FL--SQIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cH--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999998 599999986 33332110 00 01122222222222222211111
Q ss_pred --------c-cccCCCCEEEEeccCChHHHHHHHHHHHHh
Q 004726 382 --------Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (733)
Q Consensus 382 --------~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~ 412 (733)
. +.++++|+||+| .++.+.+..+.....+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1 347889999999 57888888787776655
No 306
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.30 E-value=0.0085 Score=62.44 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=99.0
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004726 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (733)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (733)
..|.-+++. .-+++....+.+..+++.+... .+-+|.|+..|+. -+.+-. .....+.. ....+ .+
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~-----~sL~~~ak-~~~~~-~~ 188 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEAL-----LSLMQMAK-TSAAL-AK 188 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccch-----hHHHhHHH-HHHHH-HH
Confidence 334445553 4889999999999999998754 5677888655443 111100 00111111 11122 34
Q ss_pred HhcCCCcEEEEeCCcccchhh-HHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 94 IEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
+.....|.|+++.|+|.||+. ..++.+|+++|.++|.+++.... .+...+|. -+.-+.-+|+
T Consensus 189 ~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e------~lpe~~q~ae 251 (285)
T TIGR00515 189 MSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE------KLPEGFQTSE 251 (285)
T ss_pred HHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC------ccchhcCCHH
Confidence 566789999999999999965 46679999999999988873322 11111111 0111123566
Q ss_pred HHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 173 EGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 173 eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
-+.+.|+||.|+++.++.+...++...+.
T Consensus 252 ~~~~~G~vD~iv~~~~~r~~l~~~L~~~~ 280 (285)
T TIGR00515 252 FLLEHGAIDMIVHRPEMKKTLASLLAKLQ 280 (285)
T ss_pred HHHhCCCCcEEECcHHHHHHHHHHHHHHh
Confidence 68899999999999999887777766543
No 307
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.29 E-value=0.00059 Score=72.96 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=59.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.||..++..+.. ...+|++|+|++++.++..+.+.+ .|. .+....+. +++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av 187 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV 187 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence 579999999999999986654 347899999999988776443211 110 12223444 568
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++||+||.|.+... .++.. +.+++++.|...+
T Consensus 188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig 219 (314)
T PRK06141 188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVG 219 (314)
T ss_pred hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeC
Confidence 89999998887442 22221 3467787654433
No 308
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.00048 Score=72.10 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=54.3
Q ss_pred ceEEEEc-CCcCcHHHHHHHHHCCCeeEEEe-CChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccC
Q 004726 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~~G~~V~~~d-~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 386 (733)
++|+||| .|.||.+||..|.++|++|++|+ ++++. + +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence 5899999 89999999999999999999995 55421 1 2457
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+||+||.|++....+... ++++++++++.+.
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGi 231 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGI 231 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCC
Confidence 899999999854433322 2788998876543
No 309
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.28 E-value=0.00045 Score=73.63 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=68.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+++||||.|.+|..+|+.+.--|.+|..||+++. -+.. +. ....+.+-.+.+++|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~-~~-----------------------~~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE-KE-----------------------LGARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH-hh-----------------------cCceeccHHHHHHhC
Confidence 6899999999999999999977899999999874 1110 00 112223322678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
|+|+..+|-..+...-+=++..+.++++++++ |++-
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaR 237 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTAR 237 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCC
Confidence 99999999888876666677788899998874 7763
No 310
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.28 E-value=0.0069 Score=61.46 Aligned_cols=143 Identities=16% Similarity=0.154 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH--HHHhcCCCcEEE
Q 004726 27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIVA 103 (733)
Q Consensus 27 al~~~~~~~l~~~l~~~-~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~kp~Ia 103 (733)
.++.+-...+...+... +++..+-+|.|.=.+ .|-.|..-++.. ......+++. ....+.+.|+|+
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~aE~~G----------~~~a~A~l~~a~a~a~~~~vP~Is 112 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRREELLG----------INQALAHLAKALALARLAGHPVIG 112 (238)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHHHHHHH----------HHHHHHHHHHHHHHhhcCCCCEEE
Confidence 68877777777777774 555666777775432 244443322221 1112222220 234466799999
Q ss_pred EeCCcccchhh-HHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcC--CCCCHHHHHHcCCc
Q 004726 104 AVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLI 180 (733)
Q Consensus 104 av~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG--~~i~a~eA~~~Glv 180 (733)
.|-|.++|||+ .+.+.+|.++|.+++.++ .++.-+++..+-+-. ..+.++.-+- ...++..+.++|+|
T Consensus 113 vI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~v 183 (238)
T TIGR03134 113 LIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGV 183 (238)
T ss_pred EEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCc
Confidence 99999998876 555568888877766555 555555555554433 3444443322 34677889999999
Q ss_pred cEEcCcchH
Q 004726 181 DAVVTSEEL 189 (733)
Q Consensus 181 ~~vv~~~~l 189 (733)
|+|+++.+-
T Consensus 184 d~vi~~~~~ 192 (238)
T TIGR03134 184 HALLDVADA 192 (238)
T ss_pred cEEeCCCCc
Confidence 999986553
No 311
>PLN02306 hydroxypyruvate reductase
Probab=97.27 E-value=0.0017 Score=71.00 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=72.0
Q ss_pred ceEEEEcCCcCcHHHHHHHH-HCCCeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~-~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||.|.+|..+|+.+. .-|.+|..||+.... .+....... ......+... .......++ +.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccccccccc--------ccccccCCHHHHH
Confidence 58999999999999999986 669999999987642 111000000 0000000000 011122345 568
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS 436 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~ 436 (733)
+.||+|+.++|-..+...-+=++..+.++++++++ |++- +.-..+.+.+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 99999999999877765555567778899999885 5652 33334545443
No 312
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.25 E-value=0.00028 Score=65.58 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=51.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|.|||+|-||++++..|+..|.+ |++++|+.++++...+.+ ....+ .....++. +.+.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~~ 74 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEALQ 74 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHHh
Confidence 5899999999999999999999986 999999999877654321 00000 01112222 4578
Q ss_pred CCCEEEEeccCCh
Q 004726 387 DVDMVIEAVIESV 399 (733)
Q Consensus 387 ~aDlVI~avpe~~ 399 (733)
++|+||.|+|-..
T Consensus 75 ~~DivI~aT~~~~ 87 (135)
T PF01488_consen 75 EADIVINATPSGM 87 (135)
T ss_dssp TESEEEE-SSTTS
T ss_pred hCCeEEEecCCCC
Confidence 9999999998543
No 313
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.25 E-value=0.019 Score=59.43 Aligned_cols=139 Identities=15% Similarity=0.218 Sum_probs=82.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004726 25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d----~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp 100 (733)
--+++....+.+..+++.+..| ..+.+|.|.-.|. +-+.+-.. . ...+.+.. ..+ ..+... .|
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~~----~-L~~~a~i~-~~~-~~ls~~-vP 138 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEANA----G-LIAIAEIM-RAI-LDARAA-VP 138 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhHH----H-HHHHHHHH-HHH-HHHhCC-CC
Confidence 4678888889999999888752 2234666654332 22221100 0 00111111 111 124444 99
Q ss_pred EEEEeCCc--ccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCH--HHHHHHHHcCCCCCHHHHHH
Q 004726 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK 176 (733)
Q Consensus 101 ~Iaav~G~--a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~--~~a~~l~ltG~~i~a~eA~~ 176 (733)
+|+++.|+ |+||+..++.+||++|+++++++++.-. .......|. --..+-.|.-+.+.++....
T Consensus 139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~ 207 (274)
T TIGR03133 139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWRTTGGKHRFL 207 (274)
T ss_pred EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhcccccccchHhHhh
Confidence 99999999 8999999999999999999888876211 111111221 11222233334455566778
Q ss_pred cCCccEEcCcc
Q 004726 177 LGLIDAVVTSE 187 (733)
Q Consensus 177 ~Glv~~vv~~~ 187 (733)
.|++|.+++++
T Consensus 208 sG~~D~~v~dd 218 (274)
T TIGR03133 208 SGDADVLVEDD 218 (274)
T ss_pred cccceEEeCCH
Confidence 99999999763
No 314
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.24 E-value=0.0004 Score=74.24 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=65.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChHH--HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhh--cc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALK--ML 376 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~--~i 376 (733)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++.-.-.+. +... .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~--------~~~~------~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELE--------DCAF------PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhh--------hccc------cccCceEE
Confidence 48999999 9999999999998886 79999996532 222111111 0000 0001 12
Q ss_pred ccccCccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 377 KGVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 377 ~~~~~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
. +.+++++++||+||.+.-- +..+.+++..++.++.+++.+++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 2 4566899999999988721 34556677777888886566655444
No 315
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.23 E-value=0.0012 Score=72.63 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=60.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|+|.+|..+|+.+...|.+|+++|+++.+++.+.. .|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 47999999999999999999999999999999988766532 221 101111456789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
|+||+|+.....+. ......++++.+++..
T Consensus 259 DVVI~atG~~~~i~----~~~l~~mk~Ggilvnv 288 (413)
T cd00401 259 DIFVTTTGNKDIIT----GEHFEQMKDGAIVCNI 288 (413)
T ss_pred CEEEECCCCHHHHH----HHHHhcCCCCcEEEEe
Confidence 99999986322222 2334567888877543
No 316
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.22 E-value=0.00032 Score=76.17 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=69.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|||||.|.||+.+|+.+...|.+|.+||+.... . + .... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence 58999999999999999999999999999974321 0 0 0001 1233 56789
Q ss_pred CCEEEEeccCChH----HHHHHHHHHHHhCCCCeEEEecCCC---CCHHHHhcccC-CCCcEEEEecC
Q 004726 388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTST---IDLNIVGEKTS-SQDRIIGAHFF 447 (733)
Q Consensus 388 aDlVI~avpe~~~----~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~-~~~~~ig~h~~ 447 (733)
||+|+..+|-..+ ...-+=++..+.++++++++ |++- +.-..+.+.+. .+..-.++..|
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999985443 22222245566788999885 5653 33344444443 22334445443
No 317
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.21 E-value=0.0051 Score=71.17 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=73.5
Q ss_pred cCcEEEEEeCC-C-----CCCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccC
Q 004726 12 NDGVAIITLIN-P-----PVNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (733)
Q Consensus 12 ~~~i~~i~l~~-p-----~~Nal~----------~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~ 75 (733)
++.+.+|-++. + +.+.+. ...+.++.++|+.+..|+.|++|||.-.+ +.|.++..+.
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~---- 113 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV---- 113 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence 56788888873 3 123221 23578999999999999999999997542 1233332221
Q ss_pred CCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCcc
Q 004726 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135 (733)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe 135 (733)
...+.+ ..+....|||||..++.+ -+|.-|+.+||.+++.+.+.+++..
T Consensus 114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~~G 162 (584)
T TIGR00705 114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDLHG 162 (584)
T ss_pred ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEeec
Confidence 122333 346678899999888765 6899999999999999988886543
No 318
>PRK04148 hypothetical protein; Provisional
Probab=97.21 E-value=0.0034 Score=57.56 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=65.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+||.+||+| -|.++|..|++.|++|+++|+++++++.+.+. + .+ ...+.+ +..+.+.-+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECcC-CCCCHHHHhcC
Confidence 479999999 89999999999999999999999987776432 1 00 000000 12233557899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
|+|-..=| +.-.+.-+-++.+.+..+.+|..-
T Consensus 79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 99998887 443445556778878888777543
No 319
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.17 E-value=0.0011 Score=70.29 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=61.9
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC--eeEEEeCChHHHHH-HHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-c-C--
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLK-GIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D-- 381 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~-~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 381 (733)
||+|||+ |.+|+++|..++..|. +++++|++ .++. +.+ +.++.. .-.+..+ . +
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD---------L~~~~~--------~~~i~~~~~~~~~ 62 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD---------LSHINT--------PAKVTGYLGPEEL 62 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH---------hHhCCC--------cceEEEecCCCch
Confidence 8999999 9999999999998885 89999998 2211 111 111100 0123322 2 2
Q ss_pred ccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 382 ~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
++++++||+||.+.- .+.++.+++...+.++.+ +++++..|
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vivvt 117 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALILIIS 117 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence 689999999998872 245566666777887754 56554433
No 320
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.17 E-value=0.0016 Score=70.81 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=66.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCC-------eeEEE--eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccc-
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~- 377 (733)
-||+|||+ |.+|.++|..++..|. .++++ |++++.++.-.-.+..... ..+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 48999999 9999999999998875 24445 8888876653332322110 0111233
Q ss_pred cccCccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 378 ~~~~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
.+.+++++++||+||.+.-- +..+.+++...|.++.+++++++..+
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 24566899999999987621 34456666677888777888765444
No 321
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.15 E-value=0.00087 Score=69.53 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=53.7
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||. |.||.++|..|.++|++|++|....+.++ +.+++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLA-------------------------------------EVARK 201 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhh
Confidence 58999999 99999999999999999999943221110 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.|++....+... ++++++++++.+
T Consensus 202 ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 202 ADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred CCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 99999999854444333 378999887644
No 322
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.09 E-value=0.0079 Score=61.77 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=67.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH-HHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||.|.-|.+-|.+|..+|.+|++--+.... .+++ .+. .....+-.++++.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~d-------------Gf~V~~v~ea~k~ 74 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KED-------------GFKVYTVEEAAKR 74 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------Hhc-------------CCEeecHHHHhhc
Confidence 68999999999999999999999998876654433 2332 222 2333333378899
Q ss_pred CCEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecCCCCCH
Q 004726 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~ 428 (733)
||+|+.-+|+ ++-.++++ +|.+.++++..+. -+.++.+
T Consensus 75 ADvim~L~PD--e~q~~vy~~~I~p~Lk~G~aL~-FaHGfNi 113 (338)
T COG0059 75 ADVVMILLPD--EQQKEVYEKEIAPNLKEGAALG-FAHGFNI 113 (338)
T ss_pred CCEEEEeCch--hhHHHHHHHHhhhhhcCCceEE-eccccce
Confidence 9999999994 44457776 7999999998764 3344443
No 323
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.09 E-value=0.0016 Score=71.39 Aligned_cols=86 Identities=23% Similarity=0.192 Sum_probs=59.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+. ..| ....+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G-------------~~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDG-------------FRVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcC-------------CEeCCHHHHHhcC
Confidence 4899999999999999999999999999999997644331 112 1111111456789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecC
Q 004726 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 423 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~t 423 (733)
|+||++... . .++. +....++++++++..+
T Consensus 252 DVVItaTG~-~----~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 252 DIFITATGN-K----DVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CEEEECCCC-H----HHHHHHHHhcCCCCcEEEEEC
Confidence 999998753 2 2232 3455678888876433
No 324
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.08 E-value=0.0096 Score=62.92 Aligned_cols=159 Identities=13% Similarity=0.019 Sum_probs=86.1
Q ss_pred cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCC-CCHHHHHHHhhccccccCccccCCCCEEEEecc
Q 004726 318 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI 396 (733)
Q Consensus 318 ~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~aDlVI~avp 396 (733)
.||+.+|..|+++|++|++++|+ +..+... +.|. +....-......+..+++.+.+..+|+||.|++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 37999999999999999999997 4444321 1121 000000000002233444555778999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEEEe-cCCCCCCCCe-eE------EecCCC-CCH
Q 004726 397 ESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAH-FFSPAHVMPL-LE------IVRTER-TSA 466 (733)
Q Consensus 397 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~~~ig~h-~~~p~~~~~l-ve------iv~~~~-t~~ 466 (733)
......+++.+.+.+.++++|++...++... .+...+. +.++++.- ++..-...|. ++ +.-|.. .+.
T Consensus 69 --s~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~ 145 (293)
T TIGR00745 69 --AYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN 145 (293)
T ss_pred --chhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch
Confidence 3345677888999998888887766665443 3444333 23333221 1111011111 11 111111 122
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCC
Q 004726 467 QVILDLMTVGKIIKKVPVVVGNCTG 491 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~pG 491 (733)
+..+.+.+++...|.......|.-+
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~ 170 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILA 170 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHH
Confidence 4556677777777766555555433
No 325
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.05 E-value=0.0012 Score=70.47 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCcceEEEEcC-CcCcHHHHHHHHHCC--CeeEEEeCC
Q 004726 306 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN 340 (733)
Q Consensus 306 ~~~~kI~VIG~-G~mG~~iA~~l~~~G--~~V~~~d~~ 340 (733)
.+|+||+|||+ |.+|+.+|..++..+ .+++++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 35679999999 999999999999665 589999993
No 326
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.05 E-value=0.00063 Score=72.75 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=63.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCCh--HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG- 378 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~- 378 (733)
||+|||+ |.+|+.+|..|+..|. +++++|+++ +.++.....+..... ........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence 7999999 9999999999998664 599999987 543221111110000 00011111
Q ss_pred ccCccccCCCCEEEEecc--------------CChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 379 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 379 ~~~~~~l~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
..+++++++||+||.+.- .+..+.+++..++.++++++.+++..|
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 345688999999998762 145566777778888875666655443
No 327
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.04 E-value=0.0017 Score=71.50 Aligned_cols=86 Identities=22% Similarity=0.181 Sum_probs=60.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ....+-.+.++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~~l~eal~~a 268 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVMTMEEAAELG 268 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEecCHHHHHhCC
Confidence 47999999999999999999999999999999877544311 11 1111111456789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHHhCCCCeEEEecC
Q 004726 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 423 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~t 423 (733)
|+||+++.. . .++. +....++++++++...
T Consensus 269 DVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 269 DIFVTATGN-K----DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcC
Confidence 999998742 2 2333 4556678998876443
No 328
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.03 E-value=0.0033 Score=61.25 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=86.6
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.|..| ++..+...+...+-.++.++..+-|.| -+-|+...+| ..++ +.+.
T Consensus 30 I~l~g~----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------------------~AIy-dtm~ 82 (200)
T COG0740 30 IFLGGE----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------------------LAIY-DTMQ 82 (200)
T ss_pred EEEeee----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------------------HHHH-HHHH
Confidence 555554 444455555555555555444444444 3444333332 2556 6788
Q ss_pred cCCCcEEEEeCCcccchhhHHhhhcCEE--EEeCCceEeCccccCCCCCChhhhhhh------------------ccccC
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRLVG 155 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalacD~r--ia~~~a~f~~pe~~~Gl~P~~g~~~~l------------------~r~~G 155 (733)
..+.||...+-|.|...|.-|++++|.. ++.++|++-..... |.+= |.+.-+ ...-|
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~--G~a~Di~i~A~ei~~~~~~l~~i~a~~TG 159 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQ--GQASDIEIHAREILKIKERLNRIYAEHTG 159 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCc--cCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999885 88888777654443 2221 111111 11112
Q ss_pred HHH--HHHHHHcCCCCCHHHHHHcCCccEEcCcch
Q 004726 156 LSK--AIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188 (733)
Q Consensus 156 ~~~--a~~l~ltG~~i~a~eA~~~Glv~~vv~~~~ 188 (733)
... -...+-....++|+||+++||||+|....+
T Consensus 160 q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 160 QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred CCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 111 122333567789999999999999986543
No 329
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.00 E-value=0.0018 Score=65.01 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=56.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh---HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc------
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG------ 378 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~------ 378 (733)
.+|.|||+|.+|+.+|..|++.|. +++++|.+. +.+.+-. + .. -+-|.-..+.+...+..+..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~---~~--~dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FI--SQIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccE--e---eh--hhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999998 599999982 2222110 0 00 00111111111111111111
Q ss_pred -----cc-Cc-cccCCCCEEEEeccCChHHHHHHHHHHHHh
Q 004726 379 -----VL-DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (733)
Q Consensus 379 -----~~-~~-~~l~~aDlVI~avpe~~~~k~~v~~~l~~~ 412 (733)
+. +. +.++++|+||+|+ ++...+..+.......
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEH 141 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHh
Confidence 00 11 3467899999995 6777777777666554
No 330
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.98 E-value=0.002 Score=69.19 Aligned_cols=92 Identities=10% Similarity=-0.005 Sum_probs=61.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.||...+..+.. ...+|.+||+++++.+...+.+. +.|. .+...++. +++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~eav 190 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREAV 190 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHHh
Confidence 579999999999997766654 34689999999999876544332 1110 12233444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+||.|+|....+ +. ...+++++.|....|
T Consensus 191 ~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 191 EGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGA 223 (325)
T ss_pred ccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence 9999999999854322 21 234678887755444
No 331
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.98 E-value=0.038 Score=57.46 Aligned_cols=140 Identities=17% Similarity=0.155 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaa 104 (733)
.-+++....+.+..+++.+... .+-+|.++..|. +-+.+-.. ....+.+.. ..+.+....-..|.|++
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~~-----sL~qmak~s-aa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGSL-----SLMQMAKIS-SALYDYQSNKKLFYISI 213 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccch-----hhhhhHHHH-HHHHHHHHcCCCCEEEE
Confidence 5889999999999999998765 466777765443 22211000 011111111 11212122467999999
Q ss_pred eCCcccchhhHH-hhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCC-----CCHHHHHHcC
Q 004726 105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS-----ITSEEGWKLG 178 (733)
Q Consensus 105 v~G~a~GgG~~l-alacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~-----i~a~eA~~~G 178 (733)
+.|+|.||+... ++.||++|+.+++.+++...+ .... .+|+. -+|+-.++.|
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr--------------------VIe~--t~ge~lpe~fq~ae~l~~~G 271 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR--------------------VIEQ--TLNKTVPEGSQAAEYLFDKG 271 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH--------------------HHHH--hcCCcCCcccccHHHHHhCc
Confidence 999999998755 667999999888877753221 1111 12222 2577788999
Q ss_pred CccEEcCcchHHHHHHHHHH
Q 004726 179 LIDAVVTSEELLKVSRLWAL 198 (733)
Q Consensus 179 lv~~vv~~~~l~~~a~~~a~ 198 (733)
+||.||+..++.+...++..
T Consensus 272 ~vD~iV~r~~lr~~l~~ll~ 291 (296)
T CHL00174 272 LFDLIVPRNLLKGVLSELFQ 291 (296)
T ss_pred CceEEEcHHHHHHHHHHHHH
Confidence 99999999988776665543
No 332
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0013 Score=71.09 Aligned_cols=93 Identities=25% Similarity=0.242 Sum_probs=61.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc--Cc-c
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-S 383 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~ 383 (733)
|++|.|||+|.+|+.+|..|++.| .+|++.||+.++++++.+... +.++..+ +.... .+ +
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~-------vD~~d~~al~~ 64 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQ-------VDAADVDALVA 64 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEE-------ecccChHHHHH
Confidence 468999999999999999999999 899999999999888644211 1111100 11111 11 5
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
.+++.|+||.|+|..... .+++. .++.++-.++
T Consensus 65 li~~~d~VIn~~p~~~~~--~i~ka---~i~~gv~yvD 97 (389)
T COG1748 65 LIKDFDLVINAAPPFVDL--TILKA---CIKTGVDYVD 97 (389)
T ss_pred HHhcCCEEEEeCCchhhH--HHHHH---HHHhCCCEEE
Confidence 578889999999944443 44332 3344554443
No 333
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.97 E-value=0.0022 Score=68.57 Aligned_cols=92 Identities=21% Similarity=0.130 Sum_probs=57.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|+|||+|.||..++..+...| .+|+++|+++++.+...+.+ |. . .+...+..+.+.+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-~---------~~~~~~~~~~l~~ 238 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-N---------AVPLDELLELLNE 238 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-e---------EEeHHHHHHHHhc
Confidence 47999999999999999999866 68999999998765542211 10 0 0000111145678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhC-CCCeEEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATN 422 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~ 422 (733)
+|+||.|++.+.. ..++..+.... ..+.++++.
T Consensus 239 aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 239 ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEe
Confidence 9999999985443 33333332222 234555543
No 334
>PRK10949 protease 4; Provisional
Probab=96.92 E-value=0.0071 Score=70.06 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEeCCcccc
Q 004726 32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALG 111 (733)
Q Consensus 32 ~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav~G~a~G 111 (733)
.+.++.++|+.+.+|+.|++|||.-.+.. |.....+ +...+.+ ..+....|||||. ...+.-
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~~-------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s 157 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPSM-------------QYIGKAL-REFRDSGKPVYAV-GDSYSQ 157 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHHH-------------HHHHHHH-HHHHHhCCeEEEE-ecCccc
Confidence 35689999999999999999999754221 1221111 1122333 3467788999985 444456
Q ss_pred hhhHHhhhcCEEEEeCCceEeCcc
Q 004726 112 GGLELAMGCHARIAAPKTQLGLPE 135 (733)
Q Consensus 112 gG~~lalacD~ria~~~a~f~~pe 135 (733)
++.-||.+||.+++.+.+.+++..
T Consensus 158 ~~YyLASaAD~I~l~P~G~v~~~G 181 (618)
T PRK10949 158 GQYYLASFANKIYLSPQGVVDLHG 181 (618)
T ss_pred hhhhhhhhCCEEEECCCceEEEee
Confidence 799999999999999988876544
No 335
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.92 E-value=0.041 Score=57.56 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCc
Q 004726 25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~----~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp 100 (733)
.-+++....+.+..+++.+..+. .+.+|.|.-.|. +-+.+-.. . ...+.+ ....+ ..+... +|
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~~----~-L~~~a~-i~~~~-~~ls~~-VP 147 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEANA----G-LAAIAE-IMRAI-VDLRAA-VP 147 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchHH----H-HHHHHH-HHHHH-HHHhCC-CC
Confidence 47888888999999999887654 256677754332 22221100 0 000111 11112 124444 99
Q ss_pred EEEEeCCc--ccchhhHHhhhcCEEEEeCCceEeC
Q 004726 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL 133 (733)
Q Consensus 101 ~Iaav~G~--a~GgG~~lalacD~ria~~~a~f~~ 133 (733)
+|+++.|. |+||+...+.+||++|+++++++++
T Consensus 148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 99999999 9999999999999999999988776
No 336
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.92 E-value=0.001 Score=70.39 Aligned_cols=94 Identities=27% Similarity=0.328 Sum_probs=61.6
Q ss_pred EEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 313 VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|||+|.+|.++|..++..+. +++++|++++.++.....+.....-. ... -.+. ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~-~~~-----------~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL-PTP-----------KKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc-CCC-----------eEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 79999999877654333222111000 000 1222 356789999999
Q ss_pred EEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 391 VI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
||.+.-. +..+.+++..++.++. ++++++
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi 110 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL 110 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 9997732 3445566666777765 455444
No 337
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.90 E-value=0.0019 Score=69.23 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=62.3
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCC-------eeEEEeCChHH--HHHHHHHHHHHHHHhHhcCCCCHHHHH-HHhhcccc
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKG 378 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~e~--~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~~ 378 (733)
||+|||+ |.+|..+|..|+..|. +++++|++++. ++.-.-.+ .+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl---------------~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMEL---------------MDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeeh---------------hcccchhcCceec
Confidence 5899999 9999999999998664 59999996543 21110000 0000 01122333
Q ss_pred c-cCccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 379 V-LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 379 ~-~~~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
+ .+++++++||+||.+.-- +..+.+++..++.++.+++++++..|
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 3 336899999999987621 23345666677888765666665544
No 338
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.0051 Score=62.39 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=59.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|||+|.+|.++|..|.+.|++|+++|.+++.+++..+. .+...+-.|.-+..+... ..-+.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd~t~~~~L~----------~agi~~a 67 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIGDATDEDVLE----------EAGIDDA 67 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEecCCCHHHHH----------hcCCCcC
Confidence 479999999999999999999999999999999998774221 000000011111000000 0237899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHh-CCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKA-CPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~ 420 (733)
|.+|-+..+|.. ..++..+... +....+++
T Consensus 68 D~vva~t~~d~~--N~i~~~la~~~~gv~~via 98 (225)
T COG0569 68 DAVVAATGNDEV--NSVLALLALKEFGVPRVIA 98 (225)
T ss_pred CEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEE
Confidence 999999885544 2444444432 34444554
No 339
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.86 E-value=0.0022 Score=71.08 Aligned_cols=88 Identities=23% Similarity=0.279 Sum_probs=61.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~ 387 (733)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+.. .| ... .++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~~-~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQV-VTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------cee-ccHHHHHhc
Confidence 57999999999999999999999999999999876533211 11 111 122 45789
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCeEEEecCCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID 427 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~ 427 (733)
+|+||.+.. . +.++ .+....++++++++ |++...
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 999999864 2 2233 24555678998875 555443
No 340
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.017 Score=62.66 Aligned_cols=147 Identities=21% Similarity=0.252 Sum_probs=102.7
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCcccCCCCchhhhhccCCCcccccchhHHHHH
Q 004726 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (733)
Q Consensus 12 ~~~i~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (733)
+..|.++.++. .+++...+.+.+.++.++++.. .+||| --.+..+ .+...++.
T Consensus 25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl---------------------~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGGL---------------------LDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCch---------------------HHHHHHHH
Confidence 34577777754 6999999999999999997753 34444 2222211 12233566
Q ss_pred HHHHhcCCCcEEEEe---CCcccchhhHHhhhcCEEEEeCCceEeCccccCCC--CC-Chh-hhhhh------cccc--C
Q 004726 91 VNLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV--IP-GFG-GTQRL------PRLV--G 155 (733)
Q Consensus 91 ~~~i~~~~kp~Iaav---~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl--~P-~~g-~~~~l------~r~~--G 155 (733)
++|.+.|.||+..| .+.|..+|..++++||+..+++.+.+|--..-.+- .+ ... ....+ .+.- .
T Consensus 79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 77999999988888 34799999999999999999999999865442221 11 011 11111 1111 3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEEcC
Q 004726 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (733)
Q Consensus 156 ~~~a~~l~ltG~~i~a~eA~~~Glv~~vv~ 185 (733)
...|.+++.....++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 366788999999999999999999998863
No 341
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.84 E-value=0.0051 Score=60.45 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=61.8
Q ss_pred eEEEEcCCcCcHHHHHHHHHC--CC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
+|++||+|.+|..+...+... .+ .|.+||++.+++..+.+.. ++ ...+++ +.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~~-~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------GR-RCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------CC-CccccHHHHh
Confidence 699999999999999987654 24 5789999999877653211 11 112455 445
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
++.|+|+||.. .+..+++..++.+. .-++||+| ++.+.
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa 96 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA 96 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence 99999999997 66666666554432 34666655 44444
No 342
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.82 E-value=0.0035 Score=66.27 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=67.0
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
=++|+|+|+|.+|..+|+.|...|..+.-+.|++..-+...+. + ....+..+.+.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~-----------~-------------~~~~d~~~~~~~ 217 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY-----------Y-------------AEFVDIEELLAN 217 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh-----------c-------------ccccCHHHHHhh
Confidence 3689999999999999999999994455555655543332111 0 001223367899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+|+||.|.|-+.+...-+=+++...++++.+|+ |++
T Consensus 218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlV-N~a 253 (336)
T KOG0069|consen 218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLV-NTA 253 (336)
T ss_pred CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEE-ecc
Confidence 999999999888887777788889999999886 444
No 343
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.82 E-value=0.0085 Score=66.54 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=65.3
Q ss_pred eEEEEcCCcC-cHHHHHHHHHC-----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 310 KVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 310 kI~VIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
||+|||+|.- ...+...|++. +-+|+++|+++++++....-.+ +..+....+ -++..|+|.
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~~ 69 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDLE 69 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCHH
Confidence 8999999873 44455555543 4589999999999887433332 222221111 246678887
Q ss_pred cccCCCCEEEEecc----------------------------------CChHHHHHHHHHHHHhCCCCeEEE
Q 004726 383 SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 383 ~~l~~aDlVI~avp----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
+++++||+||..+- -+..+..++.+++.+++ |+++++
T Consensus 70 ~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~li 140 (425)
T cd05197 70 DAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYL 140 (425)
T ss_pred HHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEE
Confidence 88999999998872 14456667778888887 455544
No 344
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.80 E-value=0.0091 Score=66.44 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=50.8
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHC-----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|.. +..+...+++. +-+|+++|+++++++......+ +..+....+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~----~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK----ILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEECCH
Confidence 38999999875 33445555543 3589999999999887433222 333321111 257778887
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 8899999999887
No 345
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.80 E-value=0.0054 Score=72.63 Aligned_cols=95 Identities=8% Similarity=0.066 Sum_probs=75.5
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEEecCCCCC------------CCCe
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 455 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~~~ig~h~~~p~~------------~~~l 455 (733)
||.|+| +....++++++.++++++++|++.+|+.. +..+.+.+.. ..+|+|.||+.... .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 689999 99999999999999999999988777643 3344444432 35799999976553 3345
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
+-+++.+.++++.++.+.++++.+|.+++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 66888888999999999999999999999884
No 346
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.78 E-value=0.0038 Score=56.82 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=58.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHC-CCeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc--
Q 004726 310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-- 384 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 384 (733)
||+|||+ |.+|..++..+... +++++.+ +++.+..+.+.. ..+.++. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCccccc--------ccccccccCChh
Confidence 5899995 99999999999985 8887766 554322222110 0010100 0000011112
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~ 428 (733)
..++|+||.|+|.+... ++...+...+.+++++++.+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 24899999999955443 4443444556789999888877654
No 347
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.78 E-value=0.0059 Score=67.68 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=49.3
Q ss_pred eEEEEcCCcCcH-HHHHHHHHC-----CCeeEEEeCC-hHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 310 KVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 310 kI~VIG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
||+|||+|..-. .+...|++. +-+|+++|++ +++++.....+++. .+....+ -.+..|+|.
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~----~~~~~~~--------~~v~~t~d~ 69 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRM----VKKAGLP--------IKVHLTTDR 69 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHH----HHhhCCC--------eEEEEeCCH
Confidence 899999988633 445555552 3589999999 78876643333322 2221110 146667777
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++.+||+||.++
T Consensus 70 ~~al~gadfVi~~~ 83 (419)
T cd05296 70 REALEGADFVFTQI 83 (419)
T ss_pred HHHhCCCCEEEEEE
Confidence 7899999999887
No 348
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.74 E-value=0.0035 Score=65.94 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=36.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
++|.|||+|.+|++++..|+..|. +|+++||+.++++...+
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~ 169 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 589999999999999999999998 79999999988776544
No 349
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.72 E-value=0.0034 Score=65.68 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=36.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|+|+|.+|.+++..|+..|++|++++|++++++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57999999999999999999999999999999987765433
No 350
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.70 E-value=0.0042 Score=60.28 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=47.9
Q ss_pred eEEEEcCCcCcHHHH--HHHHHC----CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-
Q 004726 310 KVAVIGGGLMGSGIA--TAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (733)
Q Consensus 310 kI~VIG~G~mG~~iA--~~l~~~----G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (733)
||+|||+|..-.+.- ..+... +.+|+++|+|+++++....-.+... +.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence 799999999876633 223332 3489999999999987654433332 221111 246668887
Q ss_pred cccCCCCEEEEec
Q 004726 383 SEFKDVDMVIEAV 395 (733)
Q Consensus 383 ~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 7899999999888
No 351
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.63 E-value=0.0087 Score=60.26 Aligned_cols=106 Identities=26% Similarity=0.368 Sum_probs=70.5
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l 385 (733)
..||.|||.|..|.++|..++..|. +++++|.++++++...=. +++|. +=-...++....|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MD--------LqH~s-----~f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMD--------LQHGS-----AFLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhh--------hcccc-----ccccCCceEecCccccc
Confidence 5799999999999999999999986 899999999987643211 11111 00011356667788888
Q ss_pred CCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 004726 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID 427 (733)
Q Consensus 386 ~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~ 427 (733)
+++++||..+-- +.++.+.++.++.++ +|++++...+....
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVD 141 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVD 141 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchH
Confidence 999999987731 334444555555555 56666554443333
No 352
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.63 E-value=0.017 Score=61.15 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=74.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCCh-HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
-||+|||+|.||...+..+.+. +++++ ++|+++ +.+.. ..+ +..+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~-------------v~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP-------------VYAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC-------------ccccCCHHHh
Confidence 4899999999999999999765 78877 479985 32211 001 1112222 44
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t 464 (733)
+.++|+|+.|.|..... ..+.+.+..+.=+++.. +++. .
T Consensus 58 l~~iDVViIctPs~th~-----~~~~~~L~aG~NVV~s~-------------------------~~h~-----------~ 96 (324)
T TIGR01921 58 LDDVDVLILCMGSATDI-----PEQAPYFAQFANTVDSF-------------------------DNHR-----------D 96 (324)
T ss_pred ccCCCEEEEcCCCccCH-----HHHHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence 57899999999865542 22222233332222210 0111 1
Q ss_pred CHHHHHHHHHHHHHcCCeeEE-EcCCCCcch-hhhhH
Q 004726 465 SAQVILDLMTVGKIIKKVPVV-VGNCTGFAV-NRAFF 499 (733)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~-v~d~pGfi~-nRl~~ 499 (733)
.++..+.+...++.-|+..++ .+=.|||.. ||++.
T Consensus 97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ 133 (324)
T TIGR01921 97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG 133 (324)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence 357788888888876665554 477788654 78754
No 353
>PLN02494 adenosylhomocysteinase
Probab=96.63 E-value=0.0046 Score=68.39 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=60.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+.. .|. ...+-.+.++.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G~-------------~vv~leEal~~A 310 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EGY-------------QVLTLEDVVSEA 310 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cCC-------------eeccHHHHHhhC
Confidence 57999999999999999999999999999999876443311 110 001111456789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
|+||++.... . .+..+....++++++++..+.
T Consensus 311 DVVI~tTGt~-~---vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 311 DIFVTTTGNK-D---IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CEEEECCCCc-c---chHHHHHhcCCCCCEEEEcCC
Confidence 9999876522 2 222445556889988864433
No 354
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.62 E-value=0.0074 Score=61.73 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=51.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC---Cee-EEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN---IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G---~~V-~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.||+|||+|.||..++..+.+.+ +++ .++++++++.+.... .....++++.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 58999999999999999987643 444 467777755444211 1233445544
Q ss_pred --cCCCCEEEEeccCChHHHHHHHHHHHH
Q 004726 385 --FKDVDMVIEAVIESVPLKQKIFSELEK 411 (733)
Q Consensus 385 --l~~aDlVI~avpe~~~~k~~v~~~l~~ 411 (733)
...+|+||||.. .+..++.-..+.+
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~iL~ 84 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGCLT 84 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHHHh
Confidence 377999999997 7766666555543
No 355
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.60 E-value=0.0063 Score=65.47 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=62.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+.+...+ + + .+...++. +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHHH
Confidence 479999999999999887764 454 89999999998876654432110 1 0 12223443 567
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+++|+||.|.|... .++. ..+++++.|....|
T Consensus 191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs 222 (325)
T PRK08618 191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGS 222 (325)
T ss_pred hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCC
Confidence 89999999998542 3333 35678887765544
No 356
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.59 E-value=0.0053 Score=60.80 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=36.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 47999996 999999999999999999999999887766543
No 357
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.58 E-value=0.0065 Score=58.48 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=53.8
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||+|-| |..+|..|.+.|.+|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 58999999987 88899999999999999998854322 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
||+||.|++..--+..+ .++++.++++.+..-
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~pr 119 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINR 119 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCC
Confidence 99999999743322222 245567776655443
No 358
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.56 E-value=0.047 Score=54.66 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEEEEe
Q 004726 28 LAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (733)
Q Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~Iaav 105 (733)
++.++...+...+-.++.++..+- +-|.+.|....+|-=+.. ......++ +.+...+-||...+
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv~ 114 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTIC 114 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEEE
Confidence 344488888888877765443232 333455555444411100 01123556 66788888999999
Q ss_pred CCcccchhhHHhhhcCE--EEEeCCceEeCccccCCCCCChhhhhhh------------------ccccC--HHHHHHHH
Q 004726 106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQRL------------------PRLVG--LSKAIEMM 163 (733)
Q Consensus 106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~P~~g~~~~l------------------~r~~G--~~~a~~l~ 163 (733)
-|.|.+.+.-|++++|- |++.+++++-+....-|. .|.+.-+ ...-| ...-.+++
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~---~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~ 191 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA---RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT 191 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 99999999999999995 999999999887665443 1222111 11112 12223444
Q ss_pred HcCCCCCHHHHHHcCCccEEcCc
Q 004726 164 LLSKSITSEEGWKLGLIDAVVTS 186 (733)
Q Consensus 164 ltG~~i~a~eA~~~Glv~~vv~~ 186 (733)
-....++|+||++.||||+|+.+
T Consensus 192 ~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 192 DRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred cCCCcCCHHHHHHcCCCcEEecc
Confidence 45677899999999999999854
No 359
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.48 E-value=0.069 Score=60.78 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=103.7
Q ss_pred EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 004726 17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (733)
Q Consensus 17 ~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (733)
.|.-|+|. .-++++.-.+...++++.+.+. .+-+|.|.-.+. |..|.+-+. ........+++ .++
T Consensus 318 ~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~-~a~ 384 (512)
T TIGR01117 318 GIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL-YAY 384 (512)
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH-HHH
Confidence 34446663 3679999999999999988754 567777754433 655544221 11122333555 567
Q ss_pred hcCCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeCccccCCCCCChhhhhhh-ccccC----HHHHHH-HH-
Q 004726 95 EDCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRL-PRLVG----LSKAIE-MM- 163 (733)
Q Consensus 95 ~~~~kp~Iaav~G~a~GgG~~lal----acD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l-~r~~G----~~~a~~-l~- 163 (733)
.....|.|++|-|.|.|||..-+. .+|+++|.+++.++. ++.-+++..+ .+.+. ...++. .+
T Consensus 385 ~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~ 457 (512)
T TIGR01117 385 SEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIA 457 (512)
T ss_pred HhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHH
Confidence 889999999999999888654333 289998888887764 3323333222 22111 111111 11
Q ss_pred -HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 164 -LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 164 -ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
..-+..++..+.+.|+||.|+++.++.....+..+.+.
T Consensus 458 ~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 458 EYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLE 496 (512)
T ss_pred HHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence 12234588899999999999999998776666665443
No 360
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.48 E-value=0.007 Score=64.38 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=61.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.+|...+..+.. .+ .+|.+|++++++.++..+.+.. .+ + .+. .++. +++
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 479999999999999999975 45 4799999999988776543321 11 0 111 2333 578
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+||.|.|....+ +.. .+++++.|....|
T Consensus 187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs 218 (304)
T PRK07340 187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGA 218 (304)
T ss_pred hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCC
Confidence 8999999999855433 322 2578886655444
No 361
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.46 E-value=0.0066 Score=63.80 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=50.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC-ccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~l~ 386 (733)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 57999999999999999999999 6999999999887765433210 00 0111111 14567
Q ss_pred CCCEEEEeccC
Q 004726 387 DVDMVIEAVIE 397 (733)
Q Consensus 387 ~aDlVI~avpe 397 (733)
++|+||.|+|-
T Consensus 185 ~~DivInaTp~ 195 (278)
T PRK00258 185 DFDLIINATSA 195 (278)
T ss_pred cCCEEEECCcC
Confidence 89999999983
No 362
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.43 E-value=0.0047 Score=56.16 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=60.0
Q ss_pred eEEEEc-CCcCcHHHHHHHHHCC-Ce-eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc-Ccccc
Q 004726 310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 385 (733)
Q Consensus 310 kI~VIG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l 385 (733)
||+||| .|.+|..+...|.++- ++ +.++.++.+.-..... .... ......+.+.+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE--------VFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH--------TTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh--------hccc--------cccccceeEeecchhHh
Confidence 799999 7999999999999853 35 4455665522111100 0000 00001222222 34567
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
.++|+||.|+| .....++..++ ++.++.|+++++.+...
T Consensus 65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 99999999998 66666666655 45778888888876543
No 363
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.43 E-value=0.0081 Score=64.61 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=52.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.+|...+..++. .+. +|++|+|++++.+...+++...+ | + .+...++. +++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 479999999999999999974 564 79999999999877654432110 1 0 12223444 567
Q ss_pred CCCCEEEEeccCC
Q 004726 386 KDVDMVIEAVIES 398 (733)
Q Consensus 386 ~~aDlVI~avpe~ 398 (733)
++||+||.|.|..
T Consensus 193 ~~aDiVvtaT~s~ 205 (326)
T TIGR02992 193 SGADIIVTTTPSE 205 (326)
T ss_pred ccCCEEEEecCCC
Confidence 8999999999853
No 364
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.42 E-value=0.0045 Score=68.94 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLK 346 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~ 346 (733)
++|+|||+|.||..++..|...| .+|++++++.++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 57999999999999999999999 789999999887654
No 365
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.41 E-value=0.0045 Score=67.70 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=35.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 579999999999999999999999999999999876654
No 366
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.38 E-value=0.006 Score=65.45 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCC-------CeeEEEeCChH--HHHHHHHHHHHHHHHhHhcCCCCHHHHH-HHhhcccc
Q 004726 310 KVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKG 378 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~e--~~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~~ 378 (733)
||+|+|+ |.+|+.++..|+..+ .+|+++|+++. .++... ++-.+.. .....+..
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~---------------~Dl~d~~~~~~~~~~~ 68 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV---------------MELQDCAFPLLKSVVA 68 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee---------------eehhhccccccCCcee
Confidence 7999999 999999999998855 48999999653 122100 0000000 00123333
Q ss_pred ccCc-cccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 379 VLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 379 ~~~~-~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
..++ +++++||+||.+.-- +..+.+++..++.++++++++++..|.
T Consensus 69 ~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 69 TTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred cCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 4553 889999999987721 233446666778888766776654443
No 367
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.37 E-value=0.017 Score=52.79 Aligned_cols=103 Identities=19% Similarity=0.170 Sum_probs=60.3
Q ss_pred eEEEEcC-CcCcHHHHHHHHH-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
||+|+|+ |.||+.++..+.+ .+++++ ++|++++.... +.+ ......+ ...+..++++ +.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~----g~~~~~~----------~~~~~v~~~l~~~~ 65 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDV----GELAGIG----------PLGVPVTDDLEELL 65 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBC----HHHCTSS----------T-SSBEBS-HHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chh----hhhhCcC----------CcccccchhHHHhc
Confidence 7999999 9999999999998 688855 66777621110 000 0000000 0123445555 556
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhc
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE 433 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~ 433 (733)
..+|+||+... ++.....++...+ .+..+++.|+++.-.++..
T Consensus 66 ~~~DVvIDfT~--p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~ 108 (124)
T PF01113_consen 66 EEADVVIDFTN--PDAVYDNLEYALK---HGVPLVIGTTGFSDEQIDE 108 (124)
T ss_dssp TH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHH
T ss_pred ccCCEEEEcCC--hHHhHHHHHHHHh---CCCCEEEECCCCCHHHHHH
Confidence 77999999983 6655555555444 3666777888887655443
No 368
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.33 E-value=0.025 Score=50.98 Aligned_cols=75 Identities=24% Similarity=0.221 Sum_probs=51.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHC--CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 310 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
||+|||+|.+|......+.+. +.+|+ ++|+++++.+...+. -.+...+++ +.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence 799999999999999888877 45654 889999887764221 122344555 334
Q ss_pred C--CCCEEEEeccCChHHHHHHHHHH
Q 004726 386 K--DVDMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 386 ~--~aDlVI~avpe~~~~k~~v~~~l 409 (733)
+ +.|+|+.++|... -.++..+.
T Consensus 59 ~~~~~D~V~I~tp~~~--h~~~~~~~ 82 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSS--HAEIAKKA 82 (120)
T ss_dssp HHTTESEEEEESSGGG--HHHHHHHH
T ss_pred HhhcCCEEEEecCCcc--hHHHHHHH
Confidence 3 7899999999544 33444443
No 369
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.047 Score=57.11 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=86.0
Q ss_pred eEEEEcCCcCcHHHHHHHHH-CCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc--
Q 004726 310 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-- 385 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-- 385 (733)
||++||+|-||+.|+...++ .|++|+ +-|++.+.+.++.++.-..-...++....+.-...-..+.+..|+|.+.+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~~ 98 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELIIA 98 (438)
T ss_pred EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhhc
Confidence 79999999999999987775 598876 45898888777655321100011111111111111222456666666433
Q ss_pred -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC-CCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCC
Q 004726 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST-IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (733)
Q Consensus 386 -~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~-~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~ 463 (733)
...|+||++.--..---+-.+..+ ....-++..|.-. ..+.-+..... .-.|.- ...+..
T Consensus 99 ~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~A---d~~Gvi------------yS~~~G 160 (438)
T COG4091 99 NDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQA---DAAGVI------------YSGGAG 160 (438)
T ss_pred CCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHH---hhcCeE------------EeccCC
Confidence 456889988742122222223333 3333455444321 22211111110 111221 222333
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
-.|..+-.+.+|.+.+|..++.++
T Consensus 161 DeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 161 DEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred CCcHHHHHHHHHHHhcCCeEEecc
Confidence 467788888999999999999986
No 370
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.32 E-value=0.0063 Score=58.02 Aligned_cols=70 Identities=23% Similarity=0.221 Sum_probs=49.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+||+|||+ |..|+.|+.-..+.||+|+.+-||++++..- +.+ ..+++...+. +...+++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~-----~i~q~Difd~------------~~~a~~l~g 62 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGV-----TILQKDIFDL------------TSLASDLAG 62 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccc-----eeecccccCh------------hhhHhhhcC
Confidence 48999999 9999999999999999999999999987541 000 0011121111 111256889
Q ss_pred CCEEEEecc
Q 004726 388 VDMVIEAVI 396 (733)
Q Consensus 388 aDlVI~avp 396 (733)
-|.||.+.-
T Consensus 63 ~DaVIsA~~ 71 (211)
T COG2910 63 HDAVISAFG 71 (211)
T ss_pred CceEEEecc
Confidence 999999984
No 371
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.31 E-value=0.0086 Score=66.88 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=34.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|+|||+|.||..++..|...|. +|+++++++++++..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l 222 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 479999999999999999999997 899999999876543
No 372
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.30 E-value=0.03 Score=68.22 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHhhhhhcCCCCCCCCCCCCCCcceEEEEcCCcCcHHHHHHHHHC-CC
Q 004726 259 GYSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NI 332 (733)
Q Consensus 259 ~~~~l~~E~~~~~~~~~s~~-----~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~l~~~-G~ 332 (733)
-++.|......+..+.+..+ ..+..+.|....+.+..............++||+|||+|.||...|..|++. ++
T Consensus 515 d~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~ 594 (1042)
T PLN02819 515 DKEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTI 594 (1042)
T ss_pred cHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCc
Confidence 35555555555555554222 2344555554433332211111223345578999999999999999999875 33
Q ss_pred e-------------eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc-ccCc----cccCCCCEEEEe
Q 004726 333 Y-------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIEA 394 (733)
Q Consensus 333 ~-------------V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~~l~~aDlVI~a 394 (733)
+ |++.|++++.++++.+.+ . + ++ .+.. .++. +.++++|+||.|
T Consensus 595 ~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~--------~-~-~~---------~v~lDv~D~e~L~~~v~~~DaVIsa 655 (1042)
T PLN02819 595 SYYGDDSEEPTDVHVIVASLYLKDAKETVEGI--------E-N-AE---------AVQLDVSDSESLLKYVSQVDVVISL 655 (1042)
T ss_pred cccccccccccccEEEEECCCHHHHHHHHHhc--------C-C-Cc---------eEEeecCCHHHHHHhhcCCCEEEEC
Confidence 4 999999998876643211 0 1 00 0111 1222 334789999999
Q ss_pred ccCCh
Q 004726 395 VIESV 399 (733)
Q Consensus 395 vpe~~ 399 (733)
+|...
T Consensus 656 lP~~~ 660 (1042)
T PLN02819 656 LPASC 660 (1042)
T ss_pred CCchh
Confidence 99544
No 373
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.26 E-value=0.056 Score=53.84 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=75.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||+|.+|...+..|.++|++|++++++.. .+.. +.+.+.+. ...-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence 5899999999999999999999999999987532 1111 12222111 0000111256889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC--CCCCeeEEecCCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~--~~~~lveiv~~~~t~ 465 (733)
+|+||-|+. +.++...+... +..+. ++.+....+ . ..|..|. ..+++.-.|.+...+
T Consensus 71 adlViaaT~-d~elN~~i~~~----a~~~~-lvn~~d~~~------------~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKED----LPENA-LFNVITDAE------------S---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHH----HHhCC-cEEECCCCc------------c---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999888764 66665555433 22333 332221111 1 1222232 344555566666678
Q ss_pred HHHHHHHHHHHHH
Q 004726 466 AQVILDLMTVGKI 478 (733)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (733)
|.....+++-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8877777776665
No 374
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.21 E-value=0.0085 Score=67.81 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=50.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++++|+|+|.||.+++..|++.|++|+++|+++++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 4799999999999999999999999999999988766543211 000010 1112335789
Q ss_pred CEEEEeccCCh
Q 004726 389 DMVIEAVIESV 399 (733)
Q Consensus 389 DlVI~avpe~~ 399 (733)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999999554
No 375
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.21 E-value=0.012 Score=63.39 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=51.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CC-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.+|...+..+.. .+ .+|++|+|+++++++..+.+.+.+ + + .+...++. +++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 479999999999999888875 45 589999999999887654432110 1 0 12223444 567
Q ss_pred CCCCEEEEeccCC
Q 004726 386 KDVDMVIEAVIES 398 (733)
Q Consensus 386 ~~aDlVI~avpe~ 398 (733)
++||+||.|.|..
T Consensus 196 ~~aDiVi~aT~s~ 208 (330)
T PRK08291 196 AGADIIVTTTPSE 208 (330)
T ss_pred ccCCEEEEeeCCC
Confidence 8899999998743
No 376
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.16 E-value=0.012 Score=61.35 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=53.9
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|. +|.++|..|.+.|.+|+++++....++ +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 5899999987 999999999999999999987543221 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.|++-.- ++.. ..+++++++++..+
T Consensus 202 ADIVIsAvg~p~-----~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 202 ADVIVSAVGKPG-----LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCEEEECCCCCc-----ccCH--HHcCCCcEEEEcCC
Confidence 999999997322 2221 24678888876554
No 377
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.16 E-value=0.014 Score=61.51 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=36.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
++|.|||+|-+|++++..|+..|. +|++++|++++.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 479999999999999999999997 79999999988776543
No 378
>PLN00203 glutamyl-tRNA reductase
Probab=96.15 E-value=0.0064 Score=68.99 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=54.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
++|+|||+|.||..++..|...|. +|++++++.++++...+.+ . +. . -.+...++. +.+.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~--------~-g~-~--------i~~~~~~dl~~al~ 328 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF--------P-DV-E--------IIYKPLDEMLACAA 328 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh--------C-CC-c--------eEeecHhhHHHHHh
Confidence 589999999999999999999997 7999999998876643211 0 10 0 000011122 5578
Q ss_pred CCCEEEEeccC-ChHHHHHHHHHH
Q 004726 387 DVDMVIEAVIE-SVPLKQKIFSEL 409 (733)
Q Consensus 387 ~aDlVI~avpe-~~~~k~~v~~~l 409 (733)
++|+||.|++. .+-+..+.++.+
T Consensus 329 ~aDVVIsAT~s~~pvI~~e~l~~~ 352 (519)
T PLN00203 329 EADVVFTSTSSETPLFLKEHVEAL 352 (519)
T ss_pred cCCEEEEccCCCCCeeCHHHHHHh
Confidence 89999998753 223344444444
No 379
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.14 E-value=0.0096 Score=58.05 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=33.1
Q ss_pred EEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHH
Q 004726 311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (733)
Q Consensus 311 I~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~ 346 (733)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689997 999999999999999999999999987654
No 380
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.12 E-value=0.034 Score=55.48 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=77.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|.|||+|.+|..-+..|++.|.+|++++.+... . +..+.+.|.+. .+.-.-..+.+.++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence 48999999999999999999999999999886541 1 11122222211 00001112457899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCC--CCCCCeeEEecCCCCCH
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTSA 466 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p--~~~~~lveiv~~~~t~~ 466 (733)
|+||.|. ++.++...++....+ .+ +++...+.... ..|..| ...++++-.|.+...+|
T Consensus 71 ~lVi~at-~d~~ln~~i~~~a~~---~~-ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~sP 130 (205)
T TIGR01470 71 FLVIAAT-DDEELNRRVAHAARA---RG-VPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAAP 130 (205)
T ss_pred EEEEECC-CCHHHHHHHHHHHHH---cC-CEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCCc
Confidence 9999874 566666666554332 23 33322221111 122223 23445555566667788
Q ss_pred HHHHHHHHHHHHc
Q 004726 467 QVILDLMTVGKII 479 (733)
Q Consensus 467 e~~~~~~~l~~~l 479 (733)
.....+++-++.+
T Consensus 131 ~la~~lr~~ie~~ 143 (205)
T TIGR01470 131 VLARLLRERIETL 143 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 8777777666654
No 381
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.09 E-value=0.012 Score=60.98 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=47.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.||+|+|+ |.||..++..+.+. +++++ ++|++++..... .. ..+...+++ +.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 48999998 99999999988864 67766 588887653321 00 012234455 34
Q ss_pred cCCCCEEEEeccCChHHHHHHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIF 406 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~ 406 (733)
++++|+||++.| ++.-.++.
T Consensus 58 l~~~DvVid~t~--p~~~~~~~ 77 (257)
T PRK00048 58 LADADVLIDFTT--PEATLENL 77 (257)
T ss_pred ccCCCEEEECCC--HHHHHHHH
Confidence 567999998887 44433433
No 382
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.029 Score=62.62 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=76.7
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cccC
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~ 386 (733)
.++|.|||.|.+|.++|..|.+.|++|+++|++++.+... . .++. . ...+. ....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~-~----~~~~-----------------~--~~~~~~~~~~ 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSC-P----YIHE-----------------R--YLENAEEFPE 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchh-H----HHhh-----------------h--hcCCcHHHhc
Confidence 4689999999999999999999999999999887653321 0 0000 0 00111 2236
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCCCCCCeeEEecCCCCCH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (733)
++|+||.+.+.+.. ...+++.. ..+..+++.+ +++-.. . .+.. .+.+ .|.|..-..
T Consensus 59 ~~dlvV~s~gi~~~--~~~l~~A~---~~g~~vv~~~------~~~~~~-~-------~~~~----~~~I-~ITGT~GKT 114 (418)
T PRK00683 59 QVDLVVRSPGIKKE--HPWVQAAI---ASHIPVVTDI------QLAFQT-P-------EFTR----YPSL-GITGSTGKT 114 (418)
T ss_pred CCCEEEECCCCCCC--cHHHHHHH---HCCCcEEEHH------HHHHhh-h-------hcCC----CCEE-EEECCCChH
Confidence 79999998865432 33333322 3344344432 111100 0 0001 1122 344545556
Q ss_pred HHHHHHHHHHHHcCCeeEEEcC
Q 004726 467 QVILDLMTVGKIIKKVPVVVGN 488 (733)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d 488 (733)
.+.+.+..+++..|+....++.
T Consensus 115 TTt~ml~~iL~~~g~~~~~~Gn 136 (418)
T PRK00683 115 TTILFLEHLLKRLGIPAFAMGN 136 (418)
T ss_pred HHHHHHHHHHHHcCCCeEEECC
Confidence 6677788888888886666665
No 383
>PRK05086 malate dehydrogenase; Provisional
Probab=96.00 E-value=0.016 Score=61.78 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=57.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHH---CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc--ccC-
Q 004726 309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 381 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~---~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~--~~~- 381 (733)
+||+|||+ |.+|.++|..+.. .+++++++|+++.....+.+ +.+. .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD---------l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD---------LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh---------hhcC--------CCCceEEEeCCCCH
Confidence 48999999 9999999998855 24689999998542111010 0010 00011222 344
Q ss_pred ccccCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCeEEE
Q 004726 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 382 ~~~l~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
++++++||+||.|.-. +..+.+++.+.+.++. ++.+++
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi 115 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG 115 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 4788999999999832 2225556666777774 445554
No 384
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.99 E-value=0.024 Score=60.36 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=62.4
Q ss_pred cceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
.+.++|||+|.++.-....+..- .-+|.+|++++++.++...++++ .+. ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGG----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcC----------ccceeccCHHHH
Confidence 35799999999999999888763 34899999999998887554322 111 013334454 78
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
+++||+|+.|.|.+..+ +. .+.+++++-|..
T Consensus 193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~a 223 (330)
T COG2423 193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINA 223 (330)
T ss_pred hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEe
Confidence 89999999999854432 21 234567776543
No 385
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.97 E-value=0.023 Score=56.71 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=30.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (733)
+||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 479999999999999999999997 89999987
No 386
>PRK06046 alanine dehydrogenase; Validated
Probab=95.97 E-value=0.02 Score=61.68 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=59.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++|+|||+|.+|...+..+... +. .|.+||+++++.++..+.+.+. .+ -.+...++. +.+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~~l 192 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEEAC 192 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHHHh
Confidence 4799999999999999988753 43 7889999999888765543211 01 012223444 445
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
+ +|+|+.|.|.... ++. .+.+++++.|.+..|
T Consensus 193 ~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 193 D-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA 224 (326)
T ss_pred h-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence 5 9999999985432 221 124577777654444
No 387
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.96 E-value=0.019 Score=60.90 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=62.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-C-CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.+|...+..++.- . -+|.+|+|++++.++..+++.+.+ | -.+...++. +++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav 180 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL 180 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 4799999999999999888763 3 379999999999887655443210 1 023334444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+|+.|.+.... ++. .+.+++++.|....|
T Consensus 181 ~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs 213 (301)
T PRK06407 181 RDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGS 213 (301)
T ss_pred hcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCC
Confidence 999999999874432 221 124567776654444
No 388
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.93 E-value=0.049 Score=48.76 Aligned_cols=95 Identities=21% Similarity=0.135 Sum_probs=57.3
Q ss_pred EEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCCCE
Q 004726 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl 390 (733)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+.- - .+-.|-.+..+.-. ...+.+|+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----~-~~i~gd~~~~~~l~----------~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----V-EVIYGDATDPEVLE----------RAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----S-EEEES-TTSHHHHH----------HTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----c-ccccccchhhhHHh----------hcCccccCE
Confidence 57999999999999999997779999999999977753310 0 00011111000000 034678999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 391 VIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 391 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
||.+.+++. ....+...+.+..+.-.+++-
T Consensus 66 vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 66 VVILTDDDE-ENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp EEEESSSHH-HHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEccCCHH-HHHHHHHHHHHHCCCCeEEEE
Confidence 999987553 333333444444444455543
No 389
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.92 E-value=0.017 Score=59.92 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=53.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cCc---
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--- 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 382 (733)
+||++||.|.+-.+.-...... |..|+.+|+++++.+.+.+-+...+. +. .++.+. .+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5899999999976655444343 56799999999998887543331110 01 122222 121
Q ss_pred -cccCCCCEEEEecc--CChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 383 -SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 383 -~~l~~aDlVI~avp--e~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
..++++|+|+.|.- .+.+-|.+++..|.+++++|++|+.
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 34788999999874 2334799999999999999998864
No 390
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.85 E-value=0.031 Score=59.65 Aligned_cols=92 Identities=9% Similarity=0.071 Sum_probs=62.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|.++...+..+... --+|.+|++++++.++..+.++ +.+ -.+...++. +++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-----------~~v~~~~~~~~av 190 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-----------FAVNTTLDAAEVA 190 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-----------CcEEEECCHHHHh
Confidence 5799999999999999887753 2489999999999887654321 111 123334444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+|+.|.+.... ++. .+.+++++.|....|
T Consensus 191 ~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs 223 (315)
T PRK06823 191 HAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGA 223 (315)
T ss_pred cCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCC
Confidence 999999999874433 232 134678887655444
No 391
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.82 E-value=0.021 Score=59.63 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=37.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|+|+|-++.+++..|++.|. +|++++|+.+++++..+.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 579999999999999999999995 899999999998876543
No 392
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=95.78 E-value=0.23 Score=50.35 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=74.9
Q ss_pred cccccc-CccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccC----CCCcEEEEecCCC
Q 004726 375 MLKGVL-DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQDRIIGAHFFSP 449 (733)
Q Consensus 375 ~i~~~~-~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~----~~~~~ig~h~~~p 449 (733)
.+..++ |.++++++|++|.-.|..-. ...+.+++...+++++|| +||.|++...+...+. ....+..+||-.-
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV 205 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV 205 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 344444 45899999999999985332 236678888899999987 5777777765554432 2235666776443
Q ss_pred CCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 450 ~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
|.. +.-..+.-...++|.++++.++.+..|+.++++.
T Consensus 206 Pgt-~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 206 PEM-KGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CCC-CCceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 322 2111223345689999999999999999999883
No 393
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=95.74 E-value=0.095 Score=54.71 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=67.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh-HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
+++||+|.|.+|+-.|.++..-|..|+.||.-. .....+ -.++..+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a--------------------------~gvq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA--------------------------FGVQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh--------------------------ccceeeeHHHHHhh
Confidence 579999999999999999999999999998643 222211 12333443477899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+|-.-+|-.++.+.-+-.+....++++.-|+ |+|
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~a 236 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVA 236 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-Eec
Confidence 999999999888887777677777888988664 555
No 394
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.73 E-value=0.35 Score=49.27 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=75.0
Q ss_pred cccccc-CccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcc---cC-CCCcEEEEecCCC
Q 004726 375 MLKGVL-DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TS-SQDRIIGAHFFSP 449 (733)
Q Consensus 375 ~i~~~~-~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~-~~~~~ig~h~~~p 449 (733)
.+..++ |.++++++|++|.-.|..-. ...+.+++...+++++|| +||.|++...+... +. ....+..+||-.-
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV 203 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCV 203 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCC
Confidence 344444 45899999999999985332 236677888889999987 56777776644433 33 2235666777443
Q ss_pred CCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004726 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (733)
Q Consensus 450 ~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (733)
|..-..+=++ ....++|.++++.++.+..|+.++++.
T Consensus 204 Pgt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 204 PEMKGQVYIA-EGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CCCCCceEee-cccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 3222223233 345689999999999999999999883
No 395
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.022 Score=58.81 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=63.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccc--cc--Cc-c
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VL--DY-S 383 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~--~~--~~-~ 383 (733)
.||+|||.|..|.--|+...--|-+|++.|+|.+++...-.. . . +++.. ++ ++ +
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~--------f-~------------~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL--------F-G------------GRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh--------h-C------------ceeEEEEcCHHHHHH
Confidence 589999999999999999888899999999999988764211 1 0 12221 11 12 6
Q ss_pred ccCCCCEEEEecc-CChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 384 EFKDVDMVIEAVI-ESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 384 ~l~~aDlVI~avp-e~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
.+..+|+||-+|- ...+.-+-+.+++.+.++++++|++
T Consensus 228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 7899999999881 0111112345666677889988875
No 396
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.64 E-value=0.017 Score=63.93 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=34.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|.|||+|-||..++..|+..|. ++++++|+.++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L 221 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI 221 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 479999999999999999999995 799999998876554
No 397
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.61 E-value=0.032 Score=60.90 Aligned_cols=41 Identities=27% Similarity=0.239 Sum_probs=36.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|||+|-||...|.+|+++| ..|++.+|+.+++....+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~ 220 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK 220 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 47999999999999999999999 589999999999877543
No 398
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.59 E-value=0.014 Score=64.58 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=45.8
Q ss_pred EEEEcCCcCcHHHHHHHHHCC-C-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccC--c-ccc
Q 004726 311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEF 385 (733)
Q Consensus 311 I~VIG~G~mG~~iA~~l~~~G-~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l 385 (733)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..+.+ ....+.. ..+...+. + +.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--------~~~~~~~-------~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--------LGDRVEA-------VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----------TTTTEEE-------EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--------cccceeE-------EEEecCCHHHHHHHH
Confidence 789999999999999999987 4 8999999999988754321 1111100 00111111 1 457
Q ss_pred CCCCEEEEeccC
Q 004726 386 KDVDMVIEAVIE 397 (733)
Q Consensus 386 ~~aDlVI~avpe 397 (733)
+++|+||.|+|.
T Consensus 66 ~~~dvVin~~gp 77 (386)
T PF03435_consen 66 RGCDVVINCAGP 77 (386)
T ss_dssp TTSSEEEE-SSG
T ss_pred hcCCEEEECCcc
Confidence 899999999973
No 399
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.58 E-value=0.031 Score=56.92 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=66.2
Q ss_pred HHhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 93 ~i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
.+.++++|+||.|=|---+||.--..-+|.+.+.++++|+. |.|.++++.+|.- ..+|.+. -....|+|+
T Consensus 183 em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eA-Ae~mkita~ 252 (317)
T COG0825 183 EMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEA-AEAMKITAH 252 (317)
T ss_pred HHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHH-HHHcCCCHH
Confidence 58899999999999987777766666779999999999984 5677777766654 3445443 345689999
Q ss_pred HHHHcCCccEEcCc
Q 004726 173 EGWKLGLIDAVVTS 186 (733)
Q Consensus 173 eA~~~Glv~~vv~~ 186 (733)
+.+++|+||.|+|.
T Consensus 253 dLk~lgiID~II~E 266 (317)
T COG0825 253 DLKELGIIDGIIPE 266 (317)
T ss_pred HHHhCCCcceeccC
Confidence 99999999999974
No 400
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.56 E-value=0.12 Score=58.85 Aligned_cols=127 Identities=22% Similarity=0.204 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCC--CchhhhhccCCCcccccchhHHHHHHHHHhcCCCcEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~I 102 (733)
..+++......+..+++.+..+ .+-+|.|.- |.|+ ++.+-... ...+.... .-. ..+.. ..|+|
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~i~-~~~-~~~~~-~iP~I 135 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES-----LMGMGRIF-RAI-ARLSG-GIPQI 135 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHHHH-HHH-HHHHT-TS-EE
T ss_pred cCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh-----hhhhHHHH-HHH-HHHhc-CCCeE
Confidence 4889999999999999999866 455666643 3344 33322110 01111111 222 23555 99999
Q ss_pred EEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH-------
Q 004726 103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG------- 174 (733)
Q Consensus 103 aav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA------- 174 (733)
+++.|.|.|||..++..||++|++++ +.+++. |+... + ..+|+.++.++.
T Consensus 136 ~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv-~-~~~Ge~~~~~~lgG~~~h~ 193 (493)
T PF01039_consen 136 SVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVV-E-SATGEEVDSEELGGADVHA 193 (493)
T ss_dssp EEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHH-H-HHHSSCTSHHHHHBHHHHH
T ss_pred EEEccccccchhhcccccCccccCccceEEEec--------------------ccccc-c-cccCccccchhhhhhhhhc
Confidence 99999999999999999999999987 776642 11111 1 345788888764
Q ss_pred HHcCCccEEcCcc
Q 004726 175 WKLGLIDAVVTSE 187 (733)
Q Consensus 175 ~~~Glv~~vv~~~ 187 (733)
...|.+|.+++++
T Consensus 194 ~~sG~~d~v~~de 206 (493)
T PF01039_consen 194 AKSGVVDYVVDDE 206 (493)
T ss_dssp HTSSSSSEEESSH
T ss_pred ccCCCceEEEech
Confidence 4789999999765
No 401
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.56 E-value=0.052 Score=61.42 Aligned_cols=41 Identities=24% Similarity=0.121 Sum_probs=37.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
.||.|+|+|.+|...++.+...|.+|+++|+++++++.+.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 58999999999999999999999999999999999887643
No 402
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.49 E-value=0.015 Score=62.07 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=53.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHH-CCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|..+..-+..++. .++ +|.+|+|+++++++..++++. .+ -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence 479999999999999888765 344 899999999988876554321 01 123444555 779
Q ss_pred CCCCEEEEeccCCh--HHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 386 ~~aDlVI~avpe~~--~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
++||+|+.|.|... .+ +. ...+++++.|....+.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999997444 22 21 1356788877655543
No 403
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.48 E-value=0.043 Score=59.19 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 479999999999999999999998 899999985
No 404
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.42 E-value=0.048 Score=56.19 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=42.0
Q ss_pred CCcceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHH
Q 004726 306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA 353 (733)
Q Consensus 306 ~~~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~ 353 (733)
+..+++.|-|+ +-+|..+|..|++.|++|+++.|+++++++..+++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 34567888898 9999999999999999999999999999988776654
No 405
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.40 E-value=0.043 Score=57.53 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=51.2
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|. .|.++|..|.+.|.+|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 4799999997 999999999999999999998433221 23478
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (733)
+|+||.|++...- +. .+.+++++++++.
T Consensus 203 aDIvI~AtG~~~~-----v~--~~~lk~gavViDv 230 (283)
T PRK14192 203 ADIIVGAVGKPEL-----IK--KDWIKQGAVVVDA 230 (283)
T ss_pred CCEEEEccCCCCc-----CC--HHHcCCCCEEEEE
Confidence 9999999952221 11 1346788887653
No 406
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.39 E-value=0.27 Score=51.05 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=56.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHH-HhhccccccCccccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN-ALKMLKGVLDYSEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~-~~~~i~~~~~~~~l~ 386 (733)
.+|+|+|+|.+|.+.++....+|. +++.+|+|+++.+.+.+- -...-+.+.+... ....|.--++ .
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f--------GaTe~iNp~d~~~~i~evi~EmTd----g 261 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF--------GATEFINPKDLKKPIQEVIIEMTD----G 261 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc--------CcceecChhhccccHHHHHHHHhc----C
Confidence 369999999999999999999986 899999999999887532 0111111111111 1111211111 6
Q ss_pred CCCEEEEeccCChHHHHHHHHH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSE 408 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~ 408 (733)
+.|+-+||+- ++++.++.+..
T Consensus 262 GvDysfEc~G-~~~~m~~al~s 282 (375)
T KOG0022|consen 262 GVDYSFECIG-NVSTMRAALES 282 (375)
T ss_pred CceEEEEecC-CHHHHHHHHHH
Confidence 7999999996 56655555443
No 407
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.38 E-value=0.06 Score=58.09 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=60.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-ccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l 385 (733)
++++|||+|..+...+..+..- -.+|++|++++++.++..+++.+ .+ + .+...++. +++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~av 191 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEAV 191 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHHH
Confidence 5799999999998887766642 24899999999998876554321 11 0 13334444 678
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
++||+|+.|.+.... ..++. .+.+++++.|....|
T Consensus 192 ~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs 226 (346)
T PRK07589 192 EGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGG 226 (346)
T ss_pred hcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCC
Confidence 999999999963220 01111 134678886654444
No 408
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.38 E-value=0.46 Score=50.73 Aligned_cols=41 Identities=24% Similarity=0.153 Sum_probs=34.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|+|+|+|-+|..-.+.....|.+|+.+|+++++++.+++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 48999999977776666666689999999999999887643
No 409
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.38 E-value=0.029 Score=58.43 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=53.2
Q ss_pred ceEEEEcCCcC-cHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~m-G~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|.. |.++|..|.+.|.+|+++......+. +.+++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~-------------------------------------~~~~~ 201 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLA-------------------------------------AHTRQ 201 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHH-------------------------------------HHhhh
Confidence 58999999877 99999999999999998764322111 34688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.+++-. .++.. ..+++++++++..
T Consensus 202 ADIVV~avG~~-----~~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 202 ADIVVAAVGKR-----NVLTA--DMVKPGATVIDVG 230 (285)
T ss_pred CCEEEEcCCCc-----CccCH--HHcCCCCEEEEcc
Confidence 99999999822 23332 5688999887644
No 410
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.36 E-value=0.057 Score=45.76 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=28.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeEEEeC
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 339 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~~~d~ 339 (733)
++++|+|.|.+|.+++..+... +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999999999998 678999987
No 411
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.32 E-value=0.04 Score=57.45 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=45.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeEEE-eCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCcccc-
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l- 385 (733)
.||+|||+|.||..++..+.+. +.++..+ +++. ..++..+. .. ..+..+++++.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~-~~~~~~~~--------~~-------------~~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEH-SIDAVRRA--------LG-------------EAVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCC-CHHHHhhh--------hc-------------cCCeeeCCHHHhc
Confidence 4899999999999999999876 5665433 3322 11111100 00 023344555444
Q ss_pred CCCCEEEEeccCChHHHHHHHHHH
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l 409 (733)
.++|+||+|.| ...-.++..+.
T Consensus 60 ~~~DvVve~t~--~~~~~e~~~~a 81 (265)
T PRK13303 60 QRPDLVVECAG--HAALKEHVVPI 81 (265)
T ss_pred cCCCEEEECCC--HHHHHHHHHHH
Confidence 56899999998 33333444433
No 412
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.22 E-value=0.52 Score=54.21 Aligned_cols=147 Identities=16% Similarity=0.086 Sum_probs=87.5
Q ss_pred EEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH--HH
Q 004726 18 ITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NL 93 (733)
Q Consensus 18 i~l~~p--~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~ 93 (733)
+.-|.+ ...+++....+.+..+++.+.+. .+-+|.|.-.|+.+ +.+ ..+ ........-+++. .+
T Consensus 133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGar-----l~~-----q~e-~~~~~~~~g~if~~~~~ 200 (569)
T PLN02820 133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGAN-----LPR-----QAE-VFPDRDHFGRIFYNQAR 200 (569)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-----Ccc-----ccc-ccchHhHHHHHHHHHHH
Confidence 333444 35899999999999999998765 45677775443332 211 000 0000001112221 22
Q ss_pred HhcCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
+.....|.|++|.|.|.|||......||++|+++. +.+++ .|+...+ ..+|+.++++
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~--------------------aGP~vV~--~~~Ge~v~~e 258 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL--------------------AGPPLVK--AATGEEVSAE 258 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe--------------------cCHHHHH--hhcCcccCHH
Confidence 44567999999999999999999999999999964 54443 1222221 1456667766
Q ss_pred HHH-------HcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 173 EGW-------KLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 173 eA~-------~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
+.- .-|.+|.+++++ .++...++++.
T Consensus 259 eLGGa~~h~~~sGv~d~~~~de---~~a~~~~R~ll 291 (569)
T PLN02820 259 DLGGADVHCKVSGVSDHFAQDE---LHALAIGRNIV 291 (569)
T ss_pred HhCCHHHhcccccccccccCch---HHHHHHHHHHH
Confidence 652 468888887544 23344444443
No 413
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.22 E-value=0.088 Score=59.45 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=35.5
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
+|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 79999999999999999999999999999999987764
No 414
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.21 E-value=0.44 Score=54.29 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=83.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHH-HHHhcCCCcEEE
Q 004726 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV-NLIEDCKKPIVA 103 (733)
Q Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kp~Ia 103 (733)
.-+++....+.+..+++.+.++. +-+|.|.-.|.. .+.+-.. . ...+. +.+. .....-..|.|+
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~eg~~----~-l~~~~----~~~~~~~~~s~~iP~Is 159 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQEAVD----A-LKGYG----DIFYRNTIASGVVPQIS 159 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccccch----h-hhhHH----HHHHHHHHHcCCCcEEE
Confidence 47888899999999999887654 556666533322 2211000 0 00111 1121 112334589999
Q ss_pred EeCCcccchhhHHhhhcCEEEEeCCc-eEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHHHH-------H
Q 004726 104 AVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------W 175 (733)
Q Consensus 104 av~G~a~GgG~~lalacD~ria~~~a-~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~eA-------~ 175 (733)
++.|.|.||+......||++|+.+++ .+++ -|+...+. .+|+.+++++. .
T Consensus 160 vv~G~~~GG~a~~~al~D~vim~~~~a~i~~--------------------aGP~vv~~--~~Ge~v~~e~lGGa~~h~~ 217 (512)
T TIGR01117 160 AIMGPCAGGAVYSPALTDFIYMVDNTSQMFI--------------------TGPQVIKT--VTGEEVTAEQLGGAMAHNS 217 (512)
T ss_pred EEecCCCcHHHHHHHhcCceEEeccceEEEe--------------------cChHHHHh--hcCcccchhhcchHHHhcc
Confidence 99999999998888899999999864 3443 12111111 34566666554 3
Q ss_pred HcCCccEEcCc-chHHHHHHHHHHHH
Q 004726 176 KLGLIDAVVTS-EELLKVSRLWALDI 200 (733)
Q Consensus 176 ~~Glv~~vv~~-~~l~~~a~~~a~~~ 200 (733)
.-|++|.++++ ++..+.++++..-+
T Consensus 218 ~sGv~d~~~~de~ea~~~~r~~ls~l 243 (512)
T TIGR01117 218 VSGVAHFIAEDDDDCIMLIRRLLSFL 243 (512)
T ss_pred ccceeEEecCChHHHHHHHHHHHHhC
Confidence 57999999854 44555555554443
No 415
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.20 E-value=0.04 Score=62.13 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=36.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999999999999999999999999877654
No 416
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.13 E-value=0.079 Score=61.55 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=60.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.+|-|+|.|.+|..+|+.|.+.|++|+++|.|+++.+++.+. ...+-.|-.+..+.- ....+++|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~L----------~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEIM----------QLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHHH----------HhcCcccc
Confidence 579999999999999999999999999999999988775321 000011111111000 00246799
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
|.||.+++++.+...- ...+.+..+.-.|++
T Consensus 483 ~~viv~~~~~~~~~~i-v~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGEI-VASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHHH-HHHHHHHCCCCeEEE
Confidence 9999999877654322 233344444334554
No 417
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.05 E-value=0.097 Score=56.51 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|.+|+.+|..|+++|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 479999999999999999999998 899999874
No 418
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.05 E-value=0.11 Score=60.90 Aligned_cols=97 Identities=20% Similarity=0.134 Sum_probs=62.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
.+|.|+|.|.+|..+++.|.+.|++|+++|.|+++++.+.+. ...+-.|-.+..+.-+ ...+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~----------~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELLR----------AAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHH----------hcCCccC
Confidence 479999999999999999999999999999999988875321 0000011111100000 0346899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
|.||.+++++... ..+...+.+..+.-.|++-
T Consensus 466 ~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 466 EAIVITCNEPEDT-MKIVELCQQHFPHLHILAR 497 (601)
T ss_pred CEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEE
Confidence 9999999865443 3344445555555556653
No 419
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.00 E-value=0.046 Score=57.41 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=36.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
++|.|+|+|-.+++++..|++.|. +|+++||+.++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999999997 79999999988776543
No 420
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.00 E-value=0.089 Score=53.55 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=80.9
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhh-------------c
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-------------M 375 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~-------------~ 375 (733)
||.|||+|..|+.+++.|+..|. +++++|.|.=...... ++.+-..-+-|+-..+.+.+.+. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLn---RQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLN---RQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhc---cccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999997 7888887642211110 00000000111111111111111 1
Q ss_pred cccccC--ccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEec-CCCCCHHHHhcccCCCCcEEEEecCCCCCC
Q 004726 376 LKGVLD--YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN-TSTIDLNIVGEKTSSQDRIIGAHFFSPAHV 452 (733)
Q Consensus 376 i~~~~~--~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~-tS~~~~~~l~~~~~~~~~~ig~h~~~p~~~ 452 (733)
+....+ .+.+++.|+||.|+- +.+. +..+.+..... +..++.. +.+..- ...-..+....+...++..+...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence 100011 134688999999974 4554 33334332222 2333332 222221 11111111122333344444445
Q ss_pred CCeeEEecCCCCCHHHHHHHHHHHH
Q 004726 453 MPLLEIVRTERTSAQVILDLMTVGK 477 (733)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~ 477 (733)
.|...+-..+.+.+..++.++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 5777777778888888888888875
No 421
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.88 E-value=0.14 Score=57.87 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=37.1
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 46899999999999999999999999999999999877643
No 422
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.88 E-value=0.076 Score=47.83 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=54.0
Q ss_pred ceEEEEc----CCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG----~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
++|+||| -+..|.-+...|.+.|++|+.++...+.+ ..+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5799999 58889999999999999999998765322 12334445543
Q ss_pred c-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEE
Q 004726 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419 (733)
Q Consensus 385 l-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii 419 (733)
. ...|+++.++| ++...++++++.+.- ...++
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g-~~~v~ 84 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAALG-VKAVW 84 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHHT--SEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHcC-CCEEE
Confidence 4 78999999999 887888888877653 33444
No 423
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.84 E-value=0.044 Score=45.61 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.6
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~ 344 (733)
||.|||+|..|.-+|..|++.|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987655
No 424
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.82 E-value=0.053 Score=57.32 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe-eEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~-V~~~d~~~e 342 (733)
+++.|+|+|-+|.+++..|+..|.+ |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 4688999999999999999999986 999999973
No 425
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=94.73 E-value=0.055 Score=52.15 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=32.5
Q ss_pred cceEEEE-cC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 308 VRKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 308 ~~kI~VI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
+.|+++| |. --+|.+|++.|+++|++|.+.|++.+.++...
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence 3456655 54 46899999999999999999999988666543
No 426
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.73 E-value=0.084 Score=57.10 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=56.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeEE-EeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHH-HHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~~-~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~i~~~~~~-~~ 384 (733)
.||+|+|+|.||..++..+... +++|+. .|++++..+...+.. .+. -.+... .... -.-..+....++ +.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccCc-cccccccCCceEEcCChhHh
Confidence 4899999999999999988764 577664 465554333221110 000 000000 0000 000123333344 44
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
+.++|+||+|.|.. .-.+... .+++.++.++++++.
T Consensus 76 ~~~vDVVIdaT~~~--~~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGG--VGAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCch--hhHHHHH---HHHHCCCEEEEcCCC
Confidence 57899999999843 3334333 333455666666664
No 427
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.72 E-value=0.067 Score=58.59 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=52.1
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc-cc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (733)
++++|||+|.++......++.- .+ +|.+|+|+++++++..+++...+. +. ..+...++. ++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~ea 220 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEEV 220 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHHH
Confidence 5799999999999999988763 23 899999999998876554322110 00 013334455 67
Q ss_pred cCCCCEEEEecc
Q 004726 385 FKDVDMVIEAVI 396 (733)
Q Consensus 385 l~~aDlVI~avp 396 (733)
+++||+|+.|.+
T Consensus 221 v~~ADIVvtaT~ 232 (379)
T PRK06199 221 VRGSDIVTYCNS 232 (379)
T ss_pred HcCCCEEEEccC
Confidence 899999999886
No 428
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.69 E-value=0.1 Score=57.26 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=51.0
Q ss_pred ceEEEEcCCcCcHHHH-HHHHH-----CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 309 RKVAVIGGGLMGSGIA-TAHIL-----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA-~~l~~-----~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.||+|||+|..+.+-- ..+.. .+.++.++|+++++++.. ....+++++.-..+ -++..++|.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd~ 71 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTDR 71 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecCH
Confidence 4899999998776532 22222 256899999999998733 33334444432221 246677787
Q ss_pred -cccCCCCEEEEec
Q 004726 383 -SEFKDVDMVIEAV 395 (733)
Q Consensus 383 -~~l~~aDlVI~av 395 (733)
+++++||+||.++
T Consensus 72 ~eAl~gAdfVi~~~ 85 (442)
T COG1486 72 REALEGADFVITQI 85 (442)
T ss_pred HHHhcCCCEEEEEE
Confidence 8899999999888
No 429
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.66 E-value=0.027 Score=62.64 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred cceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 308 ~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
|.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999975
No 430
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.66 E-value=0.23 Score=47.28 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=29.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV 339 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~ 339 (733)
++|.|||+|.+|...+..|.+.|++|++++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 5899999999999999999999999999964
No 431
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.54 E-value=0.29 Score=55.64 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=33.1
Q ss_pred CcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 307 ~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 3468999999999999999999999999999987543
No 432
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.51 E-value=0.92 Score=47.79 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=55.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCC-HHHHHHHhhccccccCcccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 385 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l 385 (733)
-||+|||+|.+|...+..+.+. +.+++ ++|+++++...... .+.|.-. ....+..+. ...+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 4799999999999988777754 56655 77898875321111 1112110 011111111 0124
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCC
Q 004726 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (733)
Q Consensus 386 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~ 426 (733)
.+.|+|+++.|. ..-.+.... ..+.++.++++++..
T Consensus 69 ~dIDiVf~AT~a--~~H~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSA--GAHVRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCH--HHHHHHHHH---HHHcCCeEEECCccc
Confidence 679999999984 333333333 345677777777744
No 433
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=94.51 E-value=0.46 Score=48.30 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=101.8
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 004726 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (733)
Q Consensus 15 i~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (733)
++...++-. -.-.+..-.-+.|..+++.+..+ .+.+|+++.+|+ +-..|-.- ..-++.. ....+ .+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l-----SLMQMak-tsaAl-~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL-----SLMQMAK-TSAAL-KR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH-----HHHHHHH-HHHHH-HH
Confidence 444444433 24667777788899999888765 478888887664 21111000 0001111 11233 45
Q ss_pred HhcCCCcEEEEeCCcccch-hhHHhhhcCEEEEeCCceEeCccccCCCCCChhhhhhhccccCHHHHHHHHHcCCCCCHH
Q 004726 94 IEDCKKPIVAAVEGLALGG-GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (733)
Q Consensus 94 i~~~~kp~Iaav~G~a~Gg-G~~lalacD~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~G~~~a~~l~ltG~~i~a~ 172 (733)
+.....|.|+++..+..|| ...+++..|+.||-+.|.+||..-++= -+.+...++.. --+++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQTire~LPeg----------fQ~aE 253 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQTIREKLPEG----------FQTAE 253 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-------hhhhcccCCcc----------hhhHH
Confidence 7788999999999999988 469999999999999998887543210 01111111111 22677
Q ss_pred HHHHcCCccEEcCcchHHHHHHHHHHHHHccC
Q 004726 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (733)
Q Consensus 173 eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~ 204 (733)
-.++.|+||.||+..++......+...+...+
T Consensus 254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQP 285 (294)
T ss_pred HHHHcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence 88899999999999888877666665554443
No 434
>PRK06153 hypothetical protein; Provisional
Probab=94.49 E-value=0.068 Score=57.72 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (733)
.+|+|||+|-.|+.++..|++.|. +++++|-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 379999999999999999999997 89999976
No 435
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.48 E-value=0.089 Score=46.27 Aligned_cols=72 Identities=19% Similarity=0.413 Sum_probs=49.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc-Cc-cccC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY-SEFK 386 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~l~ 386 (733)
++|.|||.|.+|..=++.|++.|.+|+++..+.+..+ + .+.... .+ +.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~ 59 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD 59 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence 5899999999999999999999999999999861111 1 111111 11 5688
Q ss_pred CCCEEEEeccCChHHHHHHHHHH
Q 004726 387 DVDMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 387 ~aDlVI~avpe~~~~k~~v~~~l 409 (733)
++|+||.|. ++..+.+.+.+..
T Consensus 60 ~~~lV~~at-~d~~~n~~i~~~a 81 (103)
T PF13241_consen 60 GADLVFAAT-DDPELNEAIYADA 81 (103)
T ss_dssp TESEEEE-S-S-HHHHHHHHHHH
T ss_pred hheEEEecC-CCHHHHHHHHHHH
Confidence 999999775 4677666665544
No 436
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=94.40 E-value=0.041 Score=60.60 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=32.9
Q ss_pred eEEEEcCCcCcHHH-HHHHHHCCCeeEEEeCChHHHHHH
Q 004726 310 KVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 310 kI~VIG~G~mG~~i-A~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
||.++|+|.||++. ...|.+.|++|+++|++++.++..
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 79999999999855 888889999999999988866654
No 437
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.34 E-value=0.14 Score=55.54 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=57.4
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHC-CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc--c
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 383 (733)
|.||+|||+ |.+|..++..|.+. +++++.+-.+.+..+...+ .. +.+. .. .... .++. .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~------~~~~-----~~-~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VH------PHLR-----GL-VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hC------cccc-----cc-cCce-eecCCHH
Confidence 368999997 99999999999886 6777654333322111110 00 0000 00 0001 1111 2
Q ss_pred ccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 384 ~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
...++|+|+.|+|... -.++..++ ...++.|+++++...+.
T Consensus 65 ~~~~vD~Vf~alP~~~--~~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGV--SMDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHH--HHHHHHHH---HhCCCEEEECCcccCCC
Confidence 4568999999999543 33444433 34678888988877663
No 438
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.34 E-value=0.22 Score=51.41 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=34.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57999987 9999999999999999999999998766554
No 439
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.32 E-value=0.074 Score=56.05 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=31.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~ 343 (733)
+++.|||+|-.+++++..++..|. +|++++|+++.
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~ 160 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF 160 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccH
Confidence 479999999999999999999996 89999999653
No 440
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.32 E-value=0.14 Score=47.72 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=53.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|+|- ...|.++|..|.+.|.+|+..+.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 58999998 56699999999999999999986543222 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.++.-..-++. +.+++++++++...
T Consensus 72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~ 101 (140)
T cd05212 72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSP 101 (140)
T ss_pred CCEEEEecCCCCccCH-------HHcCCCCEEEEcCC
Confidence 9999999975433333 34789998875443
No 441
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.31 E-value=0.12 Score=53.95 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=26.0
Q ss_pred ceEEEEc-CCcCcHHHHHHHHH-CCCeeE-EEeCC
Q 004726 309 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN 340 (733)
Q Consensus 309 ~kI~VIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~ 340 (733)
.||+|+| +|.||..++..+.+ .+++++ ++|+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4899999 59999999999986 478766 56743
No 442
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.30 E-value=0.14 Score=55.64 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.3
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHH
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~ 349 (733)
+|.|+|+|.||.-.++.+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 79999999999999888888885 78888999999998754
No 443
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.30 E-value=0.11 Score=54.18 Aligned_cols=39 Identities=21% Similarity=0.021 Sum_probs=34.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+|-.+++++..|++.|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 379999999999999999999997 599999999877654
No 444
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.11 Score=52.63 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=34.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|..++..|++.|++|++.+++++.....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 57889987 9999999999999999999999998765543
No 445
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.24 E-value=0.13 Score=48.11 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=29.4
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999873
No 446
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.24 E-value=0.098 Score=49.82 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=47.9
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-+ ..|.+++..|.+.|..|++.+...+.++ +.+++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 589999996 6899999999999999999887653332 23578
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
||+||.++.-.--++ ...+++++++++....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCc
Confidence 999999997332222 2357899988765443
No 447
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.20 E-value=0.13 Score=53.56 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=52.5
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-| ..|.++|..|.+.|..|+++......+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 589999998 8899999999999999999865433221 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.|+.-.--+.. ..+++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence 9999999963222222 3468999887644
No 448
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.09 E-value=0.25 Score=58.03 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=60.7
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
++|-|+|.|.+|..+|+.|.+.|++++++|.|+++++.+.+. ...+-.|-.+..+.-. ...+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~----------~agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLE----------SAGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHHHH----------hcCCCcC
Confidence 579999999999999999999999999999999998876321 0000011111000000 0346789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEE
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (733)
|+||.++.++.. ...+...+.+..+.-.|++
T Consensus 466 ~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 466 EVLINAIDDPQT-SLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence 999999965443 3334344444444444554
No 449
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.07 E-value=0.099 Score=53.07 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCe---eEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~---V~~~d~~ 340 (733)
+||.|+|+|.+|.++|..|...|.+ |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4799999999999999999999974 9999999
No 450
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.04 E-value=0.14 Score=54.09 Aligned_cols=87 Identities=24% Similarity=0.263 Sum_probs=61.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+++.|.|-|..|.++|..+...|.+|+++++||-.+-++ .++.....+-.++++.+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 467788999999999999999999999999999653322 22334444444677889
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
|++|.+.-..--+..+-+. .+++++|++ |..
T Consensus 266 DifiT~TGnkdVi~~eh~~----~MkDgaIl~-N~G 296 (420)
T COG0499 266 DIFVTATGNKDVIRKEHFE----KMKDGAILA-NAG 296 (420)
T ss_pred CEEEEccCCcCccCHHHHH----hccCCeEEe-ccc
Confidence 9999998644444333333 467888775 554
No 451
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.03 E-value=0.2 Score=49.00 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc--cC----
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---- 381 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 381 (733)
++|.|||-+ ..|.++|..|.+.|..|+++|++--..-. +.+.+. . +.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~~---------h-s~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESIR---------H-EKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------cccccc---------c-ccccccchhhH
Confidence 589999985 56999999999999999999865432210 000000 0 001 11
Q ss_pred c-cccCCCCEEEEeccCChH-HHHHHHHHHHHhCCCCeEEEecCCC
Q 004726 382 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTST 425 (733)
Q Consensus 382 ~-~~l~~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~ 425 (733)
+ +.+++||+||.|++-.-- ++.+ .+++++++++....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~ 158 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASI 158 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCC
Confidence 2 467999999999973322 3333 46799998875544
No 452
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.01 E-value=0.17 Score=57.68 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCCcceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH
Q 004726 295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (733)
Q Consensus 295 ~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e 342 (733)
.|+...++.. .+-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus 4 ~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 4 PPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred ccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4444444442 2346899999999999999999999999999997653
No 453
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.99 E-value=0.13 Score=52.58 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=55.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-----------CeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc-
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML- 376 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i- 376 (733)
.||.|||+|-.|+.++..|++.| .+++++|.|.=..... .+.+-...+-|.-..+.+.+.+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL----nRQlf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV----GRQAFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh----hcccCChhHCCcHHHHHHHHHHHhcc
Confidence 47999999999999999999874 2899999764221111 0001001112222222222222221
Q ss_pred --ccc--c----CccccCCCCEEEEeccCChHHHHHHHHHHHH
Q 004726 377 --KGV--L----DYSEFKDVDMVIEAVIESVPLKQKIFSELEK 411 (733)
Q Consensus 377 --~~~--~----~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~ 411 (733)
.+. . ..+.+.++|+||.|+ ++...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 110 0 012356799999998 477777777666544
No 454
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.96 E-value=0.11 Score=51.20 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCchHHHHHHh--CHHHHHHH----HHHHHHHhCC
Q 004726 620 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV--GANYVYTS----LKKWSQLYGN 692 (733)
Q Consensus 620 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~~iD~~~~~g~gfp~~~gGp~~~~d~~--G~d~~~~~----~~~~~~~~~~ 692 (733)
.||..||+.++++||.-+++..|+. +..|+|.+|-.|+|..-.--||++.+..- |+....++ ..+..+.+|+
T Consensus 188 ~Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HLNA~Gv~dYf~Rys~~I~aV~~t~Gp 265 (313)
T KOG2305|consen 188 LGFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHLNAEGVADYFKRYSAGITAVLKTMGP 265 (313)
T ss_pred ccceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhcCcHHHHHHHHHhhhhHHHHHHHcCC
Confidence 4789999999999999999999999 79999999999999655556999977643 54333222 2233455665
No 455
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.89 E-value=0.48 Score=47.68 Aligned_cols=127 Identities=21% Similarity=0.196 Sum_probs=74.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChH-HHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc---Cccc
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE 384 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~ 384 (733)
++|.|||.|.++..=+..|++.|.+|+++..+-. .+.. +.+.|. +.+.. ..+.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~------------i~~~~r~~~~~d 82 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGN------------LKLIKGNYDKEF 82 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCC------------EEEEeCCCChHH
Confidence 3799999999999999999999999999965432 1111 122232 22211 1256
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC--CCCCeeEEecCC
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 462 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~--~~~~lveiv~~~ 462 (733)
+.++++||.|+ +|.++-+.+.+. +....+++.+...... ..|..|. ...+++-.|.+.
T Consensus 83 l~g~~LViaAT-dD~~vN~~I~~~----a~~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~ 142 (223)
T PRK05562 83 IKDKHLIVIAT-DDEKLNNKIRKH----CDRLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTK 142 (223)
T ss_pred hCCCcEEEECC-CCHHHHHHHHHH----HHHcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECC
Confidence 88999999886 477776666553 3332233222211110 1233332 334555556666
Q ss_pred CCCHHHHHHHHHHHHH
Q 004726 463 RTSAQVILDLMTVGKI 478 (733)
Q Consensus 463 ~t~~e~~~~~~~l~~~ 478 (733)
..+|.....++.-++.
T Consensus 143 G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 143 GGSPKTSVFIGEKVKN 158 (223)
T ss_pred CcCcHHHHHHHHHHHH
Confidence 6677766666655554
No 456
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.86 E-value=0.21 Score=50.78 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.6
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 479999999999999999999997 788987654
No 457
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.81 E-value=0.13 Score=53.55 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=52.7
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-|. .|.++|..|.+.|.+|+++......++ +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 5799999987 899999999999999999986532221 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
||+||.++.-.--++. ..+++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 9999999941122221 5678999887644
No 458
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.79 E-value=0.14 Score=51.94 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|+|+ |.+|..++..|++.|++|++.++++++++...
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 57888886 99999999999999999999999987766543
No 459
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.75 E-value=1.2 Score=44.55 Aligned_cols=131 Identities=23% Similarity=0.239 Sum_probs=80.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh-HHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~-e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||.|..|.-=+..|++.|.+|+++..+. +.+.. +.+.+.+. .+.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~---------~~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIK---------WIEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcc---------hhhcccChhhhcC
Confidence 489999999999999999999999999998776 22222 23333221 1111122255667
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEEecCCCC--CCCCeeEEecCCCCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~~~ig~h~~~p~--~~~~lveiv~~~~t~ 465 (733)
+++||.|+. |.++.+.+++...+. .+++ |...- |+. ++|+.|. ...++.-.|.+...+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~-----------p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDD-----------PEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCC-----------ccc---CceecceeeccCCeEEEEECCCCC
Confidence 999998875 777777776654443 2332 22211 111 2333333 344566666777778
Q ss_pred HHHHHHHHHHHHHc
Q 004726 466 AQVILDLMTVGKII 479 (733)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (733)
|.....++.-++.+
T Consensus 133 P~la~~ir~~Ie~~ 146 (210)
T COG1648 133 PVLARLLREKIEAL 146 (210)
T ss_pred hHHHHHHHHHHHHH
Confidence 87777776666553
No 460
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.70 E-value=0.24 Score=50.32 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=30.2
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 479999999999999999999997 899999764
No 461
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.49 Score=53.98 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=31.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCChHH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~e~ 343 (733)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
No 462
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.63 E-value=0.15 Score=54.01 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=35.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 57888887 999999999999999999999999887766543
No 463
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.60 E-value=0.22 Score=51.79 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=54.2
Q ss_pred ceEEEEcCC-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-+ ..|.++|..|.+.|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 479999998 8899999999999999999987654332 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.|++-..-++. ..+++++++++...
T Consensus 196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi 225 (279)
T PRK14178 196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGI 225 (279)
T ss_pred CCEEEECCCcccccCH-------HHcCCCcEEEEeec
Confidence 9999999972222222 23689998876543
No 464
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.58 E-value=0.19 Score=48.26 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=50.2
Q ss_pred CCcceEEEEcCCcCcHHHHHH-H-HHCCCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCc
Q 004726 306 RGVRKVAVIGGGLMGSGIATA-H-ILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (733)
Q Consensus 306 ~~~~kI~VIG~G~mG~~iA~~-l-~~~G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (733)
.++.+|.|||+|++|.+++.. + .++|++++ ++|.+++.+-.-. +.+.-.+. +++
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~-------------~~v~V~~~----------d~l 138 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI-------------GDVPVYDL----------DDL 138 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc-------------CCeeeech----------HHH
Confidence 356799999999999999843 2 35677655 8899998654311 10111111 111
Q ss_pred -cccC--CCCEEEEeccCChHHHHHHHHHHHH
Q 004726 383 -SEFK--DVDMVIEAVIESVPLKQKIFSELEK 411 (733)
Q Consensus 383 -~~l~--~aDlVI~avpe~~~~k~~v~~~l~~ 411 (733)
.-++ +.|+.|+||| .+.-|++...|.+
T Consensus 139 e~~v~~~dv~iaiLtVP--a~~AQ~vad~Lv~ 168 (211)
T COG2344 139 EKFVKKNDVEIAILTVP--AEHAQEVADRLVK 168 (211)
T ss_pred HHHHHhcCccEEEEEcc--HHHHHHHHHHHHH
Confidence 1122 7899999999 5555566555543
No 465
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=93.58 E-value=0.24 Score=54.85 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=81.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC------eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcc----c--
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML----K-- 377 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~------~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i----~-- 377 (733)
||.|||+|.+|..+++.|+..|. +++++|.+.-...... ++.+-..-+-|.-..+.+.+.+..+ .
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLn---RQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLN---RQFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccC---cCccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999998 8999997642211100 0000000011111111111111111 0
Q ss_pred cc--------c---CccccCCCCEEEEeccCChHHHHHHHHHHHHhCCCCe-EEEecCCCCCHHHHhcccCCCCcEEEEe
Q 004726 378 GV--------L---DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIVGEKTSSQDRIIGAH 445 (733)
Q Consensus 378 ~~--------~---~~~~l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~~~~~ig~h 445 (733)
.. . +.+-+++.|+||.|+- +.+.+..+-+..... +. +|-+.+.+..- ...-..+.....-...
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~---~iPli~~gt~G~~G-~v~v~iP~~te~y~~~ 152 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYY---RKPLLESGTLGTKG-NTQVVIPHLTESYSSS 152 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEeccccee-EEEEEeCCCCCCccCC
Confidence 00 0 0123578999999974 555544443332222 22 23333332211 1111111111111222
Q ss_pred cCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHc
Q 004726 446 FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479 (733)
Q Consensus 446 ~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~l 479 (733)
...+....|..++-.-+...+..+++++.+++.+
T Consensus 153 ~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l 186 (435)
T cd01490 153 RDPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL 186 (435)
T ss_pred CCCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence 2223344566777777888899999999998875
No 466
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.49 E-value=1.2 Score=47.07 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=55.0
Q ss_pred eEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCCC
Q 004726 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (733)
Q Consensus 310 kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a 388 (733)
+|+|+|+|-+|.+-.+.+..+|. .++.+|+++++++.+++- -....+.+.+.......+.-.++ .++
T Consensus 188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f--------GAT~~vn~~~~~~vv~~i~~~T~----gG~ 255 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF--------GATHFVNPKEVDDVVEAIVELTD----GGA 255 (366)
T ss_pred eEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc--------CCceeecchhhhhHHHHHHHhcC----CCC
Confidence 69999999999999999999986 789999999999887431 11111222211111112221111 279
Q ss_pred CEEEEeccCChHHHHHHHHHH
Q 004726 389 DMVIEAVIESVPLKQKIFSEL 409 (733)
Q Consensus 389 DlVI~avpe~~~~k~~v~~~l 409 (733)
|.+|+|+- +..+.+.-++-.
T Consensus 256 d~~~e~~G-~~~~~~~al~~~ 275 (366)
T COG1062 256 DYAFECVG-NVEVMRQALEAT 275 (366)
T ss_pred CEEEEccC-CHHHHHHHHHHH
Confidence 99999996 444444444433
No 467
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.48 E-value=0.19 Score=52.43 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=35.1
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 46888887 89999999999999999999999998876543
No 468
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.39 E-value=0.2 Score=50.92 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=35.1
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
.++|.|.|+ |.+|..++..|++.|++|++++++++..+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 367999987 9999999999999999999999998776554
No 469
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.39 E-value=0.7 Score=52.10 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.5
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCCeeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (733)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 589999999999999999999999999999986
No 470
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.39 E-value=0.2 Score=51.75 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=36.6
Q ss_pred ceEEEEcC-C-cCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 309 RKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 309 ~kI~VIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+++.|.|+ | .+|.+++..|++.|++|++.+++++.++...+.+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 57889997 6 6999999999999999999999988877665443
No 471
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.37 E-value=0.13 Score=56.59 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (733)
++|.|||+|..|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 369999999999999999999998 79999998
No 472
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.23 E-value=0.24 Score=50.56 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=35.2
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~ 348 (733)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47899987 99999999999999999999999998766543
No 473
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.21 E-value=0.058 Score=58.67 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 479999999999999999999997 799999875
No 474
>PRK06196 oxidoreductase; Provisional
Probab=93.20 E-value=0.22 Score=53.25 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+|+++.++...+.
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 46788887 8999999999999999999999998877665443
No 475
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.18 E-value=0.073 Score=58.16 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCC
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (733)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 379999999999999999999997 89999987
No 476
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.18 E-value=0.43 Score=54.61 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=35.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
+.|.|.|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 35778887 999999999999999999999999988765543
No 477
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.08 E-value=0.21 Score=51.67 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=34.6
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
+.+.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEA 50 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 35667777 789999999999999999999999988776544
No 478
>PRK06194 hypothetical protein; Provisional
Probab=93.06 E-value=0.21 Score=52.38 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=35.0
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|+++|++.+.++...+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVA 48 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 57888876 899999999999999999999999877665433
No 479
>PRK07877 hypothetical protein; Provisional
Probab=93.05 E-value=0.18 Score=59.49 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC--eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~--~V~~~d~~~ 341 (733)
.||+|||+| .|+.+|..|++.|. +++++|.|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 379999999 89999999999995 899998764
No 480
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.04 E-value=0.26 Score=51.44 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=52.5
Q ss_pred ceEEEEcCCc-CcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccccCC
Q 004726 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (733)
Q Consensus 309 ~kI~VIG~G~-mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 387 (733)
++|.|||-+. .|.++|..|.+.|.+|++++.....+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 5799999987 899999999999999999985432211 24678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCC
Q 004726 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (733)
Q Consensus 388 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS 424 (733)
||+||.|+.-.--++ ...+++++++++..+
T Consensus 208 ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGi 237 (287)
T PRK14176 208 ADILVVATGVKHLIK-------ADMVKEGAVIFDVGI 237 (287)
T ss_pred CCEEEEccCCccccC-------HHHcCCCcEEEEecc
Confidence 999999875222122 235789999886554
No 481
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.04 E-value=0.52 Score=47.74 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=35.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+++.|++.|++|++.+++++.++...+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57889987 889999999999999999999999887665433
No 482
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.03 E-value=0.15 Score=52.62 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=35.1
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
|++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 367889986 9999999999999999999999998876654
No 483
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.03 E-value=0.23 Score=53.93 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=57.4
Q ss_pred eEEEEcC-CcCcHHHHHHHHHC-CCeeE-EEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cCc-cc
Q 004726 310 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SE 384 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 384 (733)
||+|||+ |.+|..+++.|.+. +++++ +++.+...-+... ..+ +.+.. . ....+. .+. +.
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~----~~~------~~l~~-----~-~~~~~~~~~~~~~ 65 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS----EVH------PHLRG-----L-VDLNLEPIDEEEI 65 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH----HhC------ccccc-----c-CCceeecCCHHHh
Confidence 7999999 99999999999977 66877 5566543211110 000 00000 0 001111 122 23
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
+.++|+||.|+|.. .-.++..++. ..++.|+++++...+.
T Consensus 66 ~~~~DvVf~alP~~--~s~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 66 AEDADVVFLALPHG--VSAELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hcCCCEEEECCCch--HHHHHHHHHH---hCCCEEEeCChhhhcC
Confidence 35899999999944 3344444443 4578888888866543
No 484
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.99 E-value=0.2 Score=51.21 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=34.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56888887 9999999999999999999999998766554
No 485
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.97 E-value=0.22 Score=51.48 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=35.8
Q ss_pred eEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHHH
Q 004726 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (733)
Q Consensus 310 kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~i 351 (733)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 6788887 88999999999999999999999998877654433
No 486
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.96 E-value=0.22 Score=51.28 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 489999999999999999999997 788998763
No 487
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=92.93 E-value=0.66 Score=52.87 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=98.3
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCcccCCCCchhhhhccCCCcccccchhHHHHHHHHHh
Q 004726 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (733)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (733)
|.-|+|.. -+++++-.+...+.+..+++ -++-+|.|.-. +.|..|-+-+ .........+++ .++.
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~E----------~~g~~~~ga~~~-~a~~ 364 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEAE----------RAGIIRAGARLL-YALA 364 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHHH----------HTTHHHHHHHHH-HHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchhh----------hcchHHHHHHHH-HHHH
Confidence 44466643 37999999999999998876 35777777543 3455443322 122344455667 6799
Q ss_pred cCCCcEEEEeCCcccchhhHHhhhc----CEEEEeCCceEeCccccCCCCCChhhhhhhcccc-------C--HHH-HHH
Q 004726 96 DCKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------G--LSK-AIE 161 (733)
Q Consensus 96 ~~~kp~Iaav~G~a~GgG~~lalac----D~ria~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~-------G--~~~-a~~ 161 (733)
++..|+|..|-|.+.|||......+ |+++|.++++++ .++.-+.+..+-+.- | ... ..+
T Consensus 365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~ 437 (493)
T PF01039_consen 365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAE 437 (493)
T ss_dssp HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHH
T ss_pred cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHH
Confidence 9999999999999999887555555 788777777776 444444443332211 1 000 111
Q ss_pred HH--HcCCCCCHHHHHHcCCccEEcCcchHHHHHHHHHHHHH
Q 004726 162 MM--LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (733)
Q Consensus 162 l~--ltG~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a 201 (733)
++ ..-+..++..+...|++|.|+++.+..........-+.
T Consensus 438 ~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~ 479 (493)
T PF01039_consen 438 KIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLW 479 (493)
T ss_dssp HHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Confidence 11 11222588999999999999999998776665554433
No 488
>PLN03075 nicotianamine synthase; Provisional
Probab=92.92 E-value=0.48 Score=49.77 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=66.0
Q ss_pred ceEEEEcCCcCcHHHHHHHHHC--CCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhcccccc-Cc---
Q 004726 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY--- 382 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~--G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~--- 382 (733)
++|+.||+|..|.+-...++.. +-.++.+|++++.++.+++.+.+ +.+ + ..++.+.. |.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L--------~~rV~F~~~Da~~~ 189 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-L--------SKRMFFHTADVMDV 189 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-c--------cCCcEEEECchhhc
Confidence 6899999999876544444333 34799999999999988654321 011 1 02233321 11
Q ss_pred -cccCCCCEEEEeccC--ChHHHHHHHHHHHHhCCCCeEEEecC
Q 004726 383 -SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 423 (733)
Q Consensus 383 -~~l~~aDlVI~avpe--~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (733)
....+.|+|+..+-= +..-++++++.+.+.+++|.+++.-+
T Consensus 190 ~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 190 TESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 235688999988621 23567899999999999998876544
No 489
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.22 Score=50.71 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=34.8
Q ss_pred cceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 308 ~~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++++.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 567888886 9999999999999999999999998765543
No 490
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.89 E-value=0.29 Score=43.15 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=61.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHH--CCCeeEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccc-cC----
Q 004726 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD---- 381 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~--~G~~V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~---- 381 (733)
.+|.-||+|. +.++..+++ .|.+|+.+|.+++.++.+.++.. +.+. ..++.+. .+
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~---------~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAA-------EEGL---------SDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTTT---------TTTEEEEESCCHGG
T ss_pred CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcCC---------CCCeEEEECccccC
Confidence 4788999998 333344444 89999999999999998866541 1110 0122221 11
Q ss_pred ccccCCCCEEEEec-----cCChHHHHHHHHHHHHhCCCCeEEEe
Q 004726 382 YSEFKDVDMVIEAV-----IESVPLKQKIFSELEKACPPHCILAT 421 (733)
Q Consensus 382 ~~~l~~aDlVI~av-----pe~~~~k~~v~~~l~~~~~~~~ii~s 421 (733)
.+.....|+|+..- .-..+..+.+++++.+.++|+..++.
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 23456789999866 21225567888999999988876654
No 491
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.88 E-value=0.24 Score=50.82 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=35.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..++..|++.|++|++++++++..+...+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAE 46 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 57889985 999999999999999999999999987766543
No 492
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.81 E-value=0.27 Score=49.47 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.4
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
++|+|.|.|.+|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 589999999999999999999988 556788877
No 493
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.77 E-value=0.26 Score=50.77 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=36.4
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+...+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 57888888 9999999999999999999999999877665443
No 494
>PRK08223 hypothetical protein; Validated
Probab=92.76 E-value=0.36 Score=50.45 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (733)
.+|.|||+|-+|+.+|..|+.+|. +++++|-|.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999997 788998864
No 495
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.75 E-value=0.25 Score=50.87 Aligned_cols=41 Identities=24% Similarity=0.143 Sum_probs=34.9
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~ 349 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAA 47 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46888876 899999999999999999999999877665433
No 496
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.71 E-value=0.21 Score=51.40 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=34.5
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~ 347 (733)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA 47 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 57899988 9999999999999999999999998765543
No 497
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.71 E-value=0.55 Score=49.80 Aligned_cols=98 Identities=22% Similarity=0.266 Sum_probs=59.3
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCe---eEEEeCChHHHHHHHHHHHHHHHHhHhcCCCCHHHHHHHhhccccccCccc
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~---V~~~d~~~e~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (733)
.+|||+|+ |..|.-+...|....+. +.++-.....-++..+ ..... + .-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f~~~~-~---------~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------FGGKS-I---------GVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------ccCcc-c---------cCccccccccc
Confidence 48999988 99999999999997543 4444433322111100 00000 0 00111133456
Q ss_pred cCCCCEEEEeccCChHHHHHHHHHHHHhCCCCeEEEecCCCCCHH
Q 004726 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (733)
Q Consensus 385 l~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~ 429 (733)
.+++|+|+.|.+.+. -+++..++ .+.++++++|+|...+.
T Consensus 64 ~~~~Divf~~ag~~~--s~~~~p~~---~~~G~~VIdnsSa~Rm~ 103 (334)
T COG0136 64 FSDVDIVFFAAGGSV--SKEVEPKA---AEAGCVVIDNSSAFRMD 103 (334)
T ss_pred cccCCEEEEeCchHH--HHHHHHHH---HHcCCEEEeCCcccccC
Confidence 779999999998433 35555554 35689999999987654
No 498
>PRK09186 flagellin modification protein A; Provisional
Probab=92.70 E-value=0.27 Score=50.47 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=35.8
Q ss_pred ceEEEEcC-CcCcHHHHHHHHHCCCeeEEEeCChHHHHHHHHH
Q 004726 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (733)
Q Consensus 309 ~kI~VIG~-G~mG~~iA~~l~~~G~~V~~~d~~~e~~~~~~~~ 350 (733)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 47 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLES 47 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHH
Confidence 46888887 8999999999999999999999998887665443
No 499
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.67 E-value=0.22 Score=51.05 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=30.3
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCCC-eeEEEeCChH
Q 004726 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G~-~V~~~d~~~e 342 (733)
.||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 479999999999999999999996 7889888653
No 500
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.65 E-value=0.29 Score=50.78 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=29.9
Q ss_pred ceEEEEcCCcCcHHHHHHHHHCC-CeeEEEeCCh
Q 004726 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNS 341 (733)
Q Consensus 309 ~kI~VIG~G~mG~~iA~~l~~~G-~~V~~~d~~~ 341 (733)
.+|.|||+|.+|+.+|..|++.| -+++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 47999999999999999999999 4899999874
Done!