BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004727
(733 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 187/673 (27%), Positives = 290/673 (43%), Gaps = 81/673 (12%)
Query: 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
+ +++ +N +D++ N+KNI ++I AK A I PEL ITGYGCED FL
Sbjct: 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDW 62
Query: 61 TVTHAWE-CLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
A E C + + TD I S G+P YNC L N + K +LAN+
Sbjct: 63 VAETAIEYCFE--IAASCTD-ITVSLGLPXRIAGITYNCVCLVENGIVKGFSAKQFLANE 119
Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
G + E RWFTAW ++ F L N++ PFG D + EICE+ +
Sbjct: 120 GVHYETRWFTAWP-RNHTTTF-LYNDVKY-------PFGDVLYNVKDARIGFEICEDAWR 170
Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239
G + +N S SH K R I + Y+Y+N G + GR
Sbjct: 171 TDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRX 230
Query: 240 YFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPS 299
+DG + G +I + + S K+V ++ A + D S
Sbjct: 231 IYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATD-----------------------S 267
Query: 300 VAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAF--GPGCWLWDYLRRSGASGFLLPLSG 357
P + +L E+E F L+DY R+S + GF+L LSG
Sbjct: 268 AETPETVLTQDDL---------------EKEFEFWEATSLGLFDYXRKSRSKGFVLSLSG 312
Query: 358 GADSSSVAAIVGCMCQLVVKEI------SNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411
GADSS+ A V + +KE+ + + D + H F +++
Sbjct: 313 GADSSACAIXVAEXIRKGLKELGLTAFLQKSNXETLFDLPALQHLP---FEEQAKKITAV 369
Query: 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVD 471
T + + NS ET AK LA+ IG+ + S+D + + + + + + ++ D
Sbjct: 370 FLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKD 429
Query: 472 GGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDC 531
++ LQNIQAR R + + L ++ L++ +SN EG GY T
Sbjct: 430 ------DITLQNIQARGRAPIIWXLTNVKQ--------ALLITTSNRSEGDVGYATXDGD 475
Query: 532 SSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMG 591
++ I PI + K +R++LRWA + L + PTAEL P S Y+Q DE D+
Sbjct: 476 TAGGIAPIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAELRP--SEYTQTDERDL- 532
Query: 592 MTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTV 651
Y+ L+ R PV ++ L T +E VK+FF+ +SIN+ K
Sbjct: 533 XPYDVLARIERKAIKERLSPVQVYTALLTE--GPYTKNEFKYWVKKFFRLWSINQWKRER 590
Query: 652 LTPSYHAESYSPD 664
L PS+H + ++ D
Sbjct: 591 LAPSFHXDDFNID 603
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 132/315 (41%), Gaps = 82/315 (26%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
+L Y++++GA GF+L +SGG DS+ + G + QL V+ I + A+R+ H
Sbjct: 28 FLKQYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVESIREEGGDAQFIAVRLPH-- 81
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
G++ + + LA K SW D I + VSAF
Sbjct: 82 ---------------------GTQQDEDDAQ-LALKFIKPDKSWKFD--IKSTVSAFSDQ 117
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
+Q TG + + N++AR RM+ + + + G LVLG+ +
Sbjct: 118 YQQETG----------DQLTDFNKGNVKARTRMIAQYAIG-------GQEGL-LVLGTDH 159
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E + G+ TKY AD+ P+ ++K+ RT L+ LG + + PTA+L
Sbjct: 160 AAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLK----ELG--APERLYLKEPTADL-- 211
Query: 578 IRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQ 637
+ Q DE ++G++Y+E+ Y L EV+ KV +
Sbjct: 212 LDEKPQQSDETELGISYDEIDDY-------------------------LEGKEVSAKVSE 246
Query: 638 FF-KYYSINRHKMTV 651
K YS+ HK V
Sbjct: 247 ALEKRYSMTEHKRQV 261
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 80/314 (25%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
+L DY++++GA GF+L +SGG DS+ + G + QL V+EI N
Sbjct: 29 FLKDYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVEEIRN-------------EGG 71
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
N F A R+ Y V E+ +Q LA + S D++ + V AF +
Sbjct: 72 NATF------IAVRLPYKV-QKDEDDAQ----LALQFIQADQSVAFDIA--STVDAFSNQ 118
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
++ L + ++ + N++ARIRMV + + + G LV+G+ +
Sbjct: 119 YENLLDE----------SLTDFNKGNVKARIRMVTQYAIG-------GQKGL-LVIGTDH 160
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E + G+ TK+ AD+ P+ ++K+ R L+ LG ++ PTA+L
Sbjct: 161 AAEAVTGFFTKFGDGGADLLPLTGLTKRQGRALLQ----ELGADERLYLKM--PTADL-- 212
Query: 578 IRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQ 637
+ Q DE ++G+TY++L Y + P++VAEK++
Sbjct: 213 LDEKPGQADETELGITYDQLDDY---------------------LEGKTVPADVAEKIE- 250
Query: 638 FFKYYSINRHKMTV 651
K Y+++ HK V
Sbjct: 251 --KRYTVSEHKRQV 262
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 121/292 (41%), Gaps = 16/292 (5%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++VA C + D N ++ + + GA + + PEL ++GY ED L+ +
Sbjct: 12 FVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
Query: 63 THAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNY 122
+ L DL+ + G P+ YN V+ ++ + PK +L +
Sbjct: 72 DAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREF 131
Query: 123 RELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI----QFLDTAVAAEICEELF 178
E R + ++ + V FG + + EICE++F
Sbjct: 132 YERRQMAPGDGERG----------TIRIGGADVAFGTDLLFAASDLPGFVLHVEICEDMF 181
Query: 179 TPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDGG 237
P+PP A+ AL G V N SGS + + + R SA+ Y+Y+ +G
Sbjct: 182 VPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTT 241
Query: 238 RLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289
L +DG + + NG ++A+ +F K V VA VD + + R + +F +
Sbjct: 242 DLAWDGQTMIWENGALLAESERFP-KGVRRSVADVDTELLRSERLRMGTFDD 292
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 120/292 (41%), Gaps = 16/292 (5%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++VA C + D N ++ + + GA + + PEL ++GY ED L+ +
Sbjct: 12 FVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
Query: 63 THAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNY 122
+ L DL+ + G P+ YN V+ ++ + PK +L +
Sbjct: 72 DAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREF 131
Query: 123 RELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI----QFLDTAVAAEICEELF 178
E R + ++ + V FG + + EI E++F
Sbjct: 132 YERRQMAPGDGERG----------TIRIGGADVAFGTDLLFAASDLPGFVLHVEIAEDMF 181
Query: 179 TPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDGG 237
P+PP A+ AL G V N SGS + + + R SA+ Y+Y+ +G
Sbjct: 182 VPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTT 241
Query: 238 RLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289
L +DG + + NG ++A+ +F K V VA VD + + R + +F +
Sbjct: 242 DLAWDGQTMIWENGALLAESERFP-KGVRRSVADVDTELLRSERLRMGTFDD 292
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 141/598 (23%), Positives = 228/598 (38%), Gaps = 126/598 (21%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT 63
L++A +++ D N + I + E GA + PE+ +TGY ED L V
Sbjct: 5 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVE 64
Query: 64 HAWECLKDL--------------LLG--DWTDGILCSFGMPVIKGSERYNCQVLCLNRKI 107
+ L++L L+G D ++ +G P G+ R VL R +
Sbjct: 65 ASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPA--GAPRNAAAVLHRGR-V 121
Query: 108 IMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDT 167
+ K L N G + E R+F +P + ++P ++
Sbjct: 122 ALTFAKHHLPNYGVFDEFRYF-------------VPGD--------TMPI----VRLHGV 156
Query: 168 AVAAEICEELFTP--IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225
+A ICE+L+ P A A G+ + +NAS ++ K D R+ G
Sbjct: 157 DIALAICEDLWQDGGRVPAARSAGAGLLLSVNAS--PYERDKDDTRLELVRKRAQEAGCT 214
Query: 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284
Y G L FDG S VV +G+++A+ QFS V + DLD A
Sbjct: 215 TAYLAMIGGQD-ELVFDGDSIVVDRDGEVVARAPQFSEGCVVL-----DLDLPAAEAEPP 268
Query: 285 SSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLR 344
+ + +I + + + +++ +++ +EE+ L Y+
Sbjct: 269 TGVVDDG---LRIDRLVISEEPLPAYEAELAGGYADRLD---ADEEVYSALVVGLRAYVA 322
Query: 345 RSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404
++G L+ LSGG DS+ VAAI C + G + V
Sbjct: 323 KNGFRSVLIGLSGGIDSALVAAIA---CDAL------GAQNV------------------ 355
Query: 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 464
Y V M S+ SS ++ A +LA G VSI+ + A+++ LTG
Sbjct: 356 ---------YGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASL-GLTG- 404
Query: 465 RPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRG 524
L +N+Q+R+R + L + N+ G ++VL N E G
Sbjct: 405 --------------LAEENLQSRLR-------GTTLMAISNQEG-HIVLAPGNKSELAVG 442
Query: 525 YLTKYDCSSADINPIGSISKQDLRTFLRW---AATHLGYS-SLAEIE-AAPPTAELEP 577
Y T Y S PI + K + W AA G + + E PP+AEL P
Sbjct: 443 YSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRP 500
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
pdb|3DPI|B Chain B, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
Length = 285
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 52/260 (20%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
++ DYLR +G +L +SGG DSS+ G + QL V+ + R Y
Sbjct: 36 FVADYLRTAGLRACVLGISGGIDSSTA----GRLAQLAVERL------------RASGY- 78
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
D+R A R+ Y + + R LA ADE +++D V
Sbjct: 79 ------DARFVAMRLPYGA---QHDEADARRALAFVRADET------LTVD--VKPAADA 121
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
+D ++ L NI+AR RM+ + +A V V+G+ +
Sbjct: 122 MLAALAAGGLAYLDHAQ--QDFVLGNIKARERMIAQYAVAGARNGV--------VIGTDH 171
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E + G+ TK+ AD+ P+ ++K+ +R R LG ++ PTA+LE
Sbjct: 172 AAESVMGFFTKFGDGGADVLPLAGLTKRRVRALARM----LGADEPLVLKT--PTADLET 225
Query: 578 IRSNYSQLDEVDMGMTYEEL 597
+R + DE G+TYE++
Sbjct: 226 LRPQ--RPDEHAYGITYEQI 243
>pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis
Length = 249
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 65/260 (25%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
WL D A GF++ LSGG DS+ A++ A++ G
Sbjct: 19 WLSDSCMNYPAEGFVIGLSGGIDSAVAASL----------------------AVKTG--- 53
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
PT + + + S+N+ + A +L + + H +SI AFL+
Sbjct: 54 ---LPTTA----------LILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLAS 100
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
Q+ T + +N + + N QAR+RM+ + A +N+ +V+G+ N
Sbjct: 101 TQSFTNLQ--------NNRQLVIKGNAQARLRMMYLYAYAQ----QYNR----IVIGTDN 144
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E GY TK+ +ADI P+ ++ K + ++ I P+A L
Sbjct: 145 ACEWYMGYFTKFGDGAADILPLVNLKKSQVFELGKYLDVP------KNILDKAPSAGLWQ 198
Query: 578 IRSNYSQLDEVDMGMTYEEL 597
Q DE +MG+TY+E+
Sbjct: 199 -----GQTDEDEMGVTYQEI 213
>pdb|1WXE|A Chain A, E.Coli Nad Synthetase, Amp
pdb|1WXF|A Chain A, E.Coli Nad Synthetase
pdb|1WXG|A Chain A, E.Coli Nad Synthetase, Dnd
pdb|1WXH|A Chain A, E.coli Nad Synthetase, Nad
pdb|1WXI|A Chain A, E.Coli Nad Synthetase, Amp.Pp
Length = 275
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 63/254 (24%)
Query: 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEI--SNGDEQVKADAIRIGHYANGEFPTDSREF 408
+L +SGG DS+ + G +CQ+ + E+ G+E ++ A+R+ + D ++
Sbjct: 43 LVLGISGGQDST----LAGKLCQMAINELRLETGNESLQFIAVRLPYGVQA----DEQDC 94
Query: 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCY 468
I + Q R+L + A L+ Q L
Sbjct: 95 QDAIAFI---------QPDRVLTV----------------NIKGAVLASEQALR------ 123
Query: 469 KVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528
+ G + + N +AR RM + +A + V V+G+ + E + G+ TK
Sbjct: 124 --EAGIELSDFVRGNEKARERMKAQYSIAGMTSGV--------VVGTDHAAEAITGFFTK 173
Query: 529 YDCSSADINPIGSISKQDLRTFLRWAA--THLGYSSLAEIEAAPPTAELEPIRSNYSQLD 586
Y DINP+ ++K+ + L A HL + PTA+LE R + D
Sbjct: 174 YGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKA--------PTADLEDDRPSLP--D 223
Query: 587 EVDMGMTYEELSVY 600
EV +G+TY+ + Y
Sbjct: 224 EVALGVTYDNIDDY 237
>pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
pdb|2E18|B Chain B, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
Length = 257
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 73/257 (28%)
Query: 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYAN 398
+ +++R G +G ++ +SGG DS++VA L K +
Sbjct: 13 ILEFIREKGNNGVVIGISGGVDSATVA-------YLATKALGK----------------- 48
Query: 399 GEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLF 458
+++ + EN E AK +A+++G + ++I +V +F+
Sbjct: 49 -----------EKVLGLIMPYFENKDVED---AKLVAEKLGIGYKVINIKPIVDSFVENL 94
Query: 459 QTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNV 518
+ N++ GL NI +R RM++ + A+ L + VLG+SN
Sbjct: 95 EL--------------NLDRKGLGNIMSRTRMIMLYAHANSLGRI--------VLGTSNR 132
Query: 519 DEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWA-ATHLGYSSLAEIEAAPPTAELEP 577
E L GY TK+ ++D PI ++ K ++ W A +G I P+A L
Sbjct: 133 SEFLTGYFTKWGDGASDYAPIINLYKTEV-----WEIAKRIGVPE--RIVKKKPSAGLWE 185
Query: 578 IRSNYSQLDEVDMGMTY 594
Q DE ++G++Y
Sbjct: 186 -----GQTDEDELGISY 197
>pdb|3P52|A Chain A, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
pdb|3P52|B Chain B, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
Length = 249
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 71/260 (27%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
++ + ++ S + G +L LSGG DS A+V +C+ +KE
Sbjct: 16 FIQEKVKNSQSQGVVLGLSGGIDS----ALVATLCKRALKEN------------------ 53
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
+ + ++ S++ A +L ++ + + I +++ AF
Sbjct: 54 ---------------VFALLXPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAF--- 95
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
+ N + L N ARIR L + ++L LV+G+SN
Sbjct: 96 ------------IKQSENTTLVSLGNFAARIRXSLLYDYSAL--------KNSLVIGTSN 135
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E L GY T Y + NPIGS+ K ++ ++ H + I+ AP E
Sbjct: 136 KSELLLGYGTIYGDLACAFNPIGSLYKSEIYALAKYLNLHENF-----IKKAPSADLWE- 189
Query: 578 IRSNYSQLDEVDMGMTYEEL 597
+Q DE D+G +Y ++
Sbjct: 190 -----NQSDEADLGFSYTKI 204
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Helicobacter Pylori
Length = 268
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 76/280 (27%)
Query: 338 WLWDYL----RRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRI 393
+L D+L ++ G + LSGG DS A+VG +CQ V KE +
Sbjct: 11 YLCDFLEKEVQKRGFKKVVYGLSGGLDS----AVVGVLCQKVFKENA------------- 53
Query: 394 GHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSA 453
+ + M S S E + A L ++ + + SI +
Sbjct: 54 --------------------HALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAI 93
Query: 454 FLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVL 513
F S F+ + R N AR+RM AF+ + ++ LV+
Sbjct: 94 FSSHFKDASLTRK---------------GNFCARLRM--AFL------YDYSLKSDSLVI 130
Query: 514 GSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTA 573
G+SN E + GY T + + INPIG + K ++ R +I PP+A
Sbjct: 131 GTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARRLNIP------KKILNKPPSA 184
Query: 574 ELEPIRSNYSQLDEVDMGMTYEELS-VYGRLRKVFHCGPV 612
+L Q DE D+G Y + + + +F P+
Sbjct: 185 DL-----FVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPI 219
>pdb|3Q4G|A Chain A, Structure Of Nad Synthetase From Vibrio Cholerae
pdb|3Q4G|B Chain B, Structure Of Nad Synthetase From Vibrio Cholerae
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 31/140 (22%)
Query: 483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSI 542
N++AR R V + +A + LVLG+ + E + G+ TK+ + D+ P+ +
Sbjct: 145 NVKARARXVAQYEIAGYVGG--------LVLGTDHSAENITGFYTKFGDGACDLAPLFGL 196
Query: 543 SKQDLRTFLRW--AATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEEL--- 597
+K+ +R + A L Y + PTA+LE + + DE + +TYE++
Sbjct: 197 NKRQVRLLAKTLGAPEQLVYKT--------PTADLEELAPQ--KADEAALNLTYEQIDDF 246
Query: 598 --------SVYGRLRKVFHC 609
V RL ++H
Sbjct: 247 LEGKAVPAEVSQRLVAIYHA 266
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 99/254 (38%), Gaps = 58/254 (22%)
Query: 341 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400
DY+ ++G G ++ LSGG DS+ V L V + G E+V+A + Y G
Sbjct: 293 DYIGKNGFPGAIIGLSGGVDSALV---------LAVAVDALGAERVRA-VMMPSRYTAGI 342
Query: 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 460
TD+ + A+R +G + +++I + AF
Sbjct: 343 STTDAADMARR--------------------------VGVRYDEIAIAPMFDAF------ 370
Query: 461 LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDE 520
R + E+ +NIQARIR +LL + NK G +VL + N E
Sbjct: 371 ----RASLAAEFAGLAEDATEENIQARIR-------GTLLMALSNKFG-SIVLTTGNKSE 418
Query: 521 GLRGYLTKYDCSSADINPIGSISKQDLRTFLRW--AATHLGYSSLA--EIEAAPPTAELE 576
GY T Y + I I+K + R+ AA G + I P+AEL
Sbjct: 419 MAVGYCTLYGDMAGGFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAELR 478
Query: 577 PIRSNYSQLDEVDM 590
+++ L D+
Sbjct: 479 ENQTDQDSLPPYDV 492
>pdb|3HMQ|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Nad
Synthetase (Nade) From Salmonella Typhimurium Lt2 In
Complex With Nad(+)
Length = 275
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAA--THLGYSSLAEIEA 568
+V+G+ + E + G+ TKY DINP+ ++K+ + L HL Y +
Sbjct: 156 VVVGTDHAAEAITGFFTKYGDGGTDINPLHRLNKRQGKQLLAALGCPEHL-YKKV----- 209
Query: 569 APPTAELEPIRSNYSQLDEVDMGMTYEELSVY 600
PTA+LE R + DE +G+TY+ + Y
Sbjct: 210 --PTADLEDDRPSLP--DEAALGVTYDNIDDY 237
>pdb|1D9U|A Chain A, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasacharide
pdb|1D9U|B Chain B, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasacharide
pdb|3D3D|A Chain A, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasaccharide
pdb|3D3D|B Chain B, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasaccharide
Length = 154
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 105 RKIIMIRPKLWLANDGNYREL-RWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163
RK++ + PKL G Y+ L RW+ A++++ L+DF ++ +VAL+Q I
Sbjct: 50 RKLVTLNPKLKSTGAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMID 109
Query: 164 FLDTAVAAEICEELFTPIP 182
D A + C ++ +P
Sbjct: 110 RGDIRQAIDRCSNIWASLP 128
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 45/284 (15%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++KVA +N L+ D N ++ I A + GA + + PEL TGY E T
Sbjct: 1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFE-------TR 53
Query: 63 THAWECLKDLLLGDWTDGIL---CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
+E + + G+ T ++ G+ ++ G+ + VL +++ P+ ++
Sbjct: 54 EEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTAEKDGDVLY--NSAVVVGPRGFI--- 108
Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
G YR++ F +++K E P ++ + F GF++ V I + F
Sbjct: 109 GKYRKIHLF--YREKFFFE----PGDLGFRV------FDLGFMK-----VGVMIXFDWFF 151
Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAF-ISATHSRGGVYMYSNHQGCDGGR 238
P LAL G +V +H + Y RA I A ++ VY + + +
Sbjct: 152 PESART-LALKGADVI-----AHPANLVMPYAPRAMPIRALENK--VYTVTADRVGEERG 203
Query: 239 LYFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281
L F G S + ++++ S+ + E+ VA++DL V R
Sbjct: 204 LKFIGKSLIASPKAEVLSMASE---TEEEVGVAEIDLSLVRNKR 244
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 103/276 (37%), Gaps = 43/276 (15%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT 63
+KV L+ D N ++ I A + GA + + PEL TGY E D
Sbjct: 2 VKVGYIQXEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQ 61
Query: 64 HAWECLKDLLLGDWTD--GILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGN 121
E L + G+ G G+ YN V+ R I G
Sbjct: 62 QIPEGETTTFLXELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGYI-----------GK 110
Query: 122 YRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPI 181
YR++ F +++K E P ++ + F GF + V IC + F P
Sbjct: 111 YRKIHLF--YREKVFFE----PGDLGFKV------FDIGFAK-----VGVXICFDWFFPE 153
Query: 182 PPHADLALNGVEVFMNASGSHHQLRKLDYRIRAF-ISATHSRGGVYMYSNHQGCDGGRLY 240
LAL G E+ +H Y RA I A +R VY + + + L
Sbjct: 154 SART-LALKGAEII-----AHPANLVXPYAPRAXPIRALENR--VYTITADRVGEERGLK 205
Query: 241 FDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLD 275
F G S + ++++ S+ + EI V ++DL+
Sbjct: 206 FIGKSLIASPKAEVLSIASE---TEEEIGVVEIDLN 238
>pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|G Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 599
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSAD 535
+++GSS + G+RGYLT YD + +
Sbjct: 169 VIIGSSGAELGVRGYLTAYDVKTGE 193
>pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
Length = 599
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSAD 535
+++GSS + G+RGYLT YD + +
Sbjct: 169 VIIGSSGAELGVRGYLTAYDVKTGE 193
>pdb|1W6S|A Chain A, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
pdb|1W6S|C Chain C, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
Length = 599
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSAD 535
+++GSS + G+RGYLT YD + +
Sbjct: 169 VIIGSSGAELGVRGYLTAYDVKTGE 193
>pdb|1LRW|A Chain A, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
pdb|1LRW|C Chain C, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
Length = 600
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSADI 536
+++GSS + G+RGY+T YD S ++
Sbjct: 169 VLVGSSGAELGVRGYVTAYDVKSGEM 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,128,210
Number of Sequences: 62578
Number of extensions: 929793
Number of successful extensions: 2029
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1984
Number of HSP's gapped (non-prelim): 35
length of query: 733
length of database: 14,973,337
effective HSP length: 106
effective length of query: 627
effective length of database: 8,340,069
effective search space: 5229223263
effective search space used: 5229223263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)