Query 004727
Match_columns 733
No_of_seqs 566 out of 3445
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 11:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2303 Predicted NAD synthase 100.0 7E-201 2E-205 1574.7 50.7 698 1-699 2-700 (706)
2 PLN02339 NAD+ synthase (glutam 100.0 7E-162 1E-166 1412.1 42.8 697 1-697 1-697 (700)
3 PRK02628 nadE NAD synthetase; 100.0 3E-110 6E-115 980.1 36.0 622 2-695 11-678 (679)
4 PRK13981 NAD synthetase; Provi 100.0 1.7E-97 4E-102 856.0 33.3 524 4-664 1-526 (540)
5 PF02540 NAD_synthase: NAD syn 100.0 3.3E-54 7.2E-59 446.1 12.4 239 333-651 3-241 (242)
6 COG0171 NadE NAD synthase [Coe 100.0 1.1E-52 2.4E-57 435.2 14.6 254 329-659 6-259 (268)
7 PRK00768 nadE NAD synthetase; 100.0 3.9E-51 8.4E-56 424.3 14.5 247 326-655 17-265 (268)
8 PRK13980 NAD synthetase; Provi 100.0 1.1E-48 2.5E-53 411.6 16.2 251 329-660 11-261 (265)
9 PRK00876 nadE NAD synthetase; 100.0 5.1E-47 1.1E-51 405.2 17.4 264 330-655 14-318 (326)
10 cd00553 NAD_synthase NAD+ synt 100.0 2.9E-46 6.2E-51 390.1 14.4 246 328-649 3-248 (248)
11 PTZ00323 NAD+ synthase; Provis 100.0 1.2E-44 2.6E-49 382.3 15.8 265 325-650 24-289 (294)
12 cd07570 GAT_Gln-NAD-synth Glut 100.0 7.6E-45 1.7E-49 381.6 13.5 248 5-283 1-249 (261)
13 cd07586 nitrilase_8 Uncharacte 100.0 1.1E-41 2.3E-46 359.4 11.7 246 5-283 1-253 (269)
14 TIGR03381 agmatine_aguB N-carb 100.0 6.9E-42 1.5E-46 362.5 10.1 248 4-283 1-264 (279)
15 cd07576 R-amidase_like Pseudom 100.0 8E-42 1.7E-46 357.0 8.8 240 5-283 1-244 (254)
16 cd07587 ML_beta-AS mammalian-l 100.0 5.3E-41 1.2E-45 367.6 9.7 250 2-283 62-345 (363)
17 COG0388 Predicted amidohydrola 100.0 5.8E-41 1.2E-45 355.1 8.2 252 2-283 1-255 (274)
18 PRK10438 C-N hydrolase family 100.0 1.5E-40 3.2E-45 348.8 10.6 240 1-283 1-243 (256)
19 cd07568 ML_beta-AS_like mammal 100.0 1.9E-40 4.1E-45 353.4 11.2 249 2-282 2-268 (287)
20 TIGR00552 nadE NAD+ synthetase 100.0 1.1E-39 2.4E-44 340.8 15.4 235 334-656 8-243 (250)
21 cd07572 nit Nit1, Nit 2, and r 100.0 5.5E-40 1.2E-44 345.3 9.4 244 5-283 1-257 (265)
22 cd07569 DCase N-carbamyl-D-ami 100.0 1.8E-39 3.8E-44 348.6 13.1 251 2-282 2-283 (302)
23 cd07580 nitrilase_2 Uncharacte 100.0 1.5E-39 3.3E-44 343.1 10.2 244 5-283 1-254 (268)
24 cd07573 CPA N-carbamoylputresc 100.0 1.8E-39 3.9E-44 345.1 10.8 248 4-283 1-267 (284)
25 PLN02747 N-carbamolyputrescine 100.0 1.4E-39 3E-44 348.5 9.5 249 2-282 5-273 (296)
26 cd07583 nitrilase_5 Uncharacte 100.0 1.7E-39 3.7E-44 339.5 9.4 240 5-282 1-244 (253)
27 PLN00202 beta-ureidopropionase 100.0 4.1E-39 9E-44 356.3 10.6 250 2-283 85-366 (405)
28 cd07585 nitrilase_7 Uncharacte 100.0 8.6E-39 1.9E-43 335.7 11.4 242 5-283 1-247 (261)
29 cd07584 nitrilase_6 Uncharacte 100.0 1.1E-38 2.5E-43 334.3 10.5 240 5-283 1-249 (258)
30 cd07581 nitrilase_3 Uncharacte 100.0 1.6E-38 3.5E-43 332.4 9.9 241 6-283 1-247 (255)
31 cd07579 nitrilase_1_R2 Second 100.0 2.5E-38 5.5E-43 335.8 10.9 237 5-279 1-255 (279)
32 cd07578 nitrilase_1_R1 First n 100.0 1.3E-38 2.8E-43 334.2 8.2 238 4-282 1-245 (258)
33 cd07564 nitrilases_CHs Nitrila 100.0 2E-38 4.3E-43 339.8 9.4 247 4-282 1-277 (297)
34 cd07565 aliphatic_amidase alip 100.0 3.9E-38 8.5E-43 336.3 9.9 241 4-283 1-256 (291)
35 PLN02798 nitrilase 100.0 5E-38 1.1E-42 334.8 10.2 248 2-283 9-270 (286)
36 cd07575 Xc-1258_like Xanthomon 100.0 6.4E-38 1.4E-42 327.9 10.0 238 4-282 1-240 (252)
37 PLN02504 nitrilase 100.0 5.9E-38 1.3E-42 341.9 9.1 247 1-283 22-306 (346)
38 cd07567 biotinidase_like bioti 100.0 7.7E-38 1.7E-42 333.9 8.7 237 5-278 2-279 (299)
39 cd07577 Ph0642_like Pyrococcus 100.0 8.2E-38 1.8E-42 328.2 8.0 234 5-281 1-243 (259)
40 cd07197 nitrilase Nitrilase su 100.0 3.6E-37 7.9E-42 320.6 11.5 238 6-282 1-244 (253)
41 cd07582 nitrilase_4 Uncharacte 100.0 1.2E-36 2.5E-41 325.6 9.8 249 5-283 2-282 (294)
42 cd07574 nitrilase_Rim1_like Un 100.0 9.9E-37 2.1E-41 323.5 9.1 244 4-283 1-267 (280)
43 PRK13287 amiF formamidase; Pro 100.0 5.3E-35 1.2E-39 317.2 10.2 245 2-283 12-268 (333)
44 PRK13286 amiE acylamide amidoh 100.0 5.1E-35 1.1E-39 317.9 8.3 241 3-283 12-269 (345)
45 cd07571 ALP_N-acyl_transferase 100.0 5.1E-34 1.1E-38 301.6 7.0 223 4-276 1-251 (270)
46 cd07566 ScNTA1_like Saccharomy 100.0 6.3E-33 1.4E-37 296.3 7.2 226 5-248 1-264 (295)
47 KOG0807 Carbon-nitrogen hydrol 100.0 5.7E-32 1.2E-36 267.0 5.2 249 4-283 16-276 (295)
48 PF00795 CN_hydrolase: Carbon- 99.9 7.5E-29 1.6E-33 246.7 -1.1 176 5-200 1-186 (186)
49 KOG0806 Carbon-nitrogen hydrol 99.9 1.6E-27 3.5E-32 247.1 7.6 247 2-282 12-278 (298)
50 PRK00302 lnt apolipoprotein N- 99.9 8.1E-26 1.8E-30 259.3 7.6 224 3-275 219-470 (505)
51 TIGR00546 lnt apolipoprotein N 99.9 9.6E-26 2.1E-30 250.8 4.4 204 3-253 159-391 (391)
52 KOG0805 Carbon-nitrogen hydrol 99.9 5.8E-24 1.3E-28 210.6 10.3 245 1-281 15-297 (337)
53 KOG0808 Carbon-nitrogen hydrol 99.9 6.8E-23 1.5E-27 204.2 8.8 248 2-281 72-353 (387)
54 PRK12291 apolipoprotein N-acyl 99.8 3.1E-21 6.6E-26 215.4 6.7 188 4-235 195-406 (418)
55 PRK13825 conjugal transfer pro 99.7 6.1E-17 1.3E-21 178.7 5.3 171 22-231 208-387 (388)
56 PF03054 tRNA_Me_trans: tRNA m 99.6 2.8E-16 6E-21 170.7 7.3 165 349-578 1-199 (356)
57 TIGR00268 conserved hypothetic 99.6 1.5E-15 3.2E-20 159.2 11.2 186 338-602 4-195 (252)
58 COG0815 Lnt Apolipoprotein N-a 99.6 5E-16 1.1E-20 177.1 7.6 230 3-272 227-478 (518)
59 COG1606 ATP-utilizing enzymes 99.6 9.7E-16 2.1E-20 155.0 8.8 177 339-592 10-192 (269)
60 COG0482 TrmU Predicted tRNA(5- 99.6 1E-14 2.2E-19 156.2 12.1 166 348-577 3-196 (356)
61 PRK14665 mnmA tRNA-specific 2- 99.4 6.2E-13 1.4E-17 145.5 11.1 165 349-578 6-195 (360)
62 TIGR00884 guaA_Cterm GMP synth 99.4 1E-12 2.2E-17 141.4 11.3 172 337-577 8-196 (311)
63 KOG2805 tRNA (5-methylaminomet 99.4 1.2E-12 2.6E-17 135.1 10.4 164 348-578 5-205 (377)
64 PRK14664 tRNA-specific 2-thiou 99.4 1.6E-12 3.5E-17 142.0 11.1 161 349-578 6-190 (362)
65 cd01998 tRNA_Me_trans tRNA met 99.4 2.9E-12 6.3E-17 140.4 12.0 163 350-578 1-195 (349)
66 PRK00143 mnmA tRNA-specific 2- 99.3 3.4E-12 7.3E-17 139.7 11.5 163 350-578 2-194 (346)
67 PLN02347 GMP synthetase 99.3 3.3E-12 7.2E-17 146.3 11.6 177 338-577 218-420 (536)
68 cd01997 GMP_synthase_C The C-t 99.3 6.6E-12 1.4E-16 134.0 11.7 163 350-577 1-181 (295)
69 PRK00919 GMP synthase subunit 99.3 8.3E-12 1.8E-16 133.6 12.1 172 336-577 12-194 (307)
70 TIGR00420 trmU tRNA (5-methyla 99.3 1.1E-11 2.4E-16 135.7 12.3 163 350-577 2-197 (352)
71 cd01990 Alpha_ANH_like_I This 99.3 5.9E-12 1.3E-16 127.5 7.7 153 351-577 1-159 (202)
72 PRK01565 thiamine biosynthesis 99.2 2.1E-11 4.6E-16 135.7 8.0 155 349-574 177-343 (394)
73 PRK00074 guaA GMP synthase; Re 99.1 1.7E-10 3.7E-15 132.4 11.1 175 335-577 205-396 (511)
74 cd01993 Alpha_ANH_like_II This 99.0 4.4E-10 9.5E-15 111.7 8.2 152 350-561 1-173 (185)
75 PRK11106 queuosine biosynthesi 99.0 2.1E-10 4.5E-15 118.3 5.5 158 349-561 2-179 (231)
76 TIGR02432 lysidine_TilS_N tRNA 99.0 1.5E-09 3.3E-14 108.6 10.6 145 350-561 1-166 (189)
77 COG0603 Predicted PP-loop supe 99.0 5.8E-10 1.3E-14 112.7 7.2 162 348-561 2-179 (222)
78 PRK04527 argininosuccinate syn 98.8 1.4E-08 3E-13 111.9 11.6 155 349-563 3-169 (400)
79 PRK00509 argininosuccinate syn 98.8 1.7E-08 3.6E-13 111.6 11.1 155 348-562 2-166 (399)
80 PF06508 QueC: Queuosine biosy 98.8 2E-09 4.4E-14 109.7 3.3 160 350-561 1-176 (209)
81 COG0519 GuaA GMP synthase, PP- 98.8 2.2E-08 4.7E-13 102.9 10.5 164 344-574 17-195 (315)
82 cd01996 Alpha_ANH_like_III Thi 98.7 4.3E-08 9.4E-13 94.8 10.1 119 350-528 3-122 (154)
83 PRK13820 argininosuccinate syn 98.7 4.7E-08 1E-12 108.1 11.2 153 349-562 3-163 (394)
84 TIGR00364 exsB protein. This p 98.7 9.1E-09 2E-13 104.3 4.5 61 351-449 1-61 (201)
85 PRK08349 hypothetical protein; 98.7 1.1E-07 2.4E-12 96.3 11.5 157 350-575 2-170 (198)
86 cd01992 PP-ATPase N-terminal d 98.6 1.3E-07 2.8E-12 94.1 10.5 142 350-561 1-162 (185)
87 PRK14561 hypothetical protein; 98.6 1.2E-07 2.6E-12 95.7 8.7 136 350-552 2-144 (194)
88 cd01712 ThiI ThiI is required 98.6 1.9E-07 4.2E-12 92.6 9.3 147 350-561 1-157 (177)
89 TIGR03573 WbuX N-acetyl sugar 98.6 2.9E-07 6.3E-12 101.0 10.7 121 349-528 60-180 (343)
90 PLN00200 argininosuccinate syn 98.5 1.5E-07 3.2E-12 104.4 8.2 65 349-451 6-71 (404)
91 TIGR00342 thiazole biosynthesi 98.5 3.8E-07 8.3E-12 101.0 11.0 155 349-574 173-339 (371)
92 cd01999 Argininosuccinate_Synt 98.5 4.6E-07 9.9E-12 100.3 9.4 151 351-561 1-162 (385)
93 TIGR00032 argG argininosuccina 98.4 5.4E-07 1.2E-11 100.0 9.1 63 350-451 1-64 (394)
94 PRK08384 thiamine biosynthesis 98.4 6.9E-07 1.5E-11 98.7 9.7 143 349-559 181-336 (381)
95 cd01713 PAPS_reductase This do 98.4 1.6E-06 3.5E-11 84.2 10.0 67 350-451 1-67 (173)
96 PRK02628 nadE NAD synthetase; 98.4 1.4E-07 3.1E-12 112.1 2.4 75 607-685 562-637 (679)
97 cd01991 Asn_Synthase_B_C The C 98.1 7.7E-06 1.7E-10 86.2 8.8 122 349-529 16-137 (269)
98 KOG0571 Asparagine synthase (g 98.0 1.1E-05 2.5E-10 87.4 8.2 141 334-528 213-353 (543)
99 KOG1622 GMP synthase [Nucleoti 98.0 4.6E-06 9.9E-11 90.7 5.2 182 337-573 222-415 (552)
100 cd01995 ExsB ExsB is a transcr 98.0 1.1E-05 2.3E-10 79.4 7.4 52 350-439 1-52 (169)
101 PRK10696 tRNA 2-thiocytidine b 98.0 1.6E-05 3.4E-10 83.9 7.9 152 348-561 29-196 (258)
102 PF01171 ATP_bind_3: PP-loop f 97.9 2.9E-05 6.2E-10 77.5 7.8 142 350-561 1-162 (182)
103 PF02568 ThiI: Thiamine biosyn 97.9 5.1E-05 1.1E-09 76.5 8.8 69 349-455 4-80 (197)
104 TIGR01536 asn_synth_AEB aspara 97.9 2.6E-05 5.7E-10 89.2 7.4 66 349-449 254-319 (467)
105 PF00733 Asn_synthase: Asparag 97.8 2.2E-05 4.9E-10 81.4 6.0 74 337-449 8-81 (255)
106 PRK08576 hypothetical protein; 97.8 8E-05 1.7E-09 83.7 10.4 67 340-444 226-292 (438)
107 PTZ00077 asparagine synthetase 97.8 0.0001 2.2E-09 86.4 10.9 90 329-448 220-309 (586)
108 PLN02549 asparagine synthase ( 97.8 0.00011 2.3E-09 86.0 11.0 148 329-528 208-355 (578)
109 PRK09431 asnB asparagine synth 97.7 0.00014 3.1E-09 84.7 10.6 92 330-449 211-302 (554)
110 PRK05253 sulfate adenylyltrans 97.6 0.00032 6.8E-09 75.6 11.2 67 349-449 28-94 (301)
111 TIGR03108 eps_aminotran_1 exos 97.6 0.00014 3E-09 86.4 9.3 118 349-527 259-376 (628)
112 cd01994 Alpha_ANH_like_IV This 97.6 3.6E-05 7.8E-10 77.7 3.1 61 350-448 1-67 (194)
113 TIGR03104 trio_amidotrans aspa 97.6 0.00013 2.9E-09 85.8 8.0 80 331-449 245-327 (589)
114 PRK01269 tRNA s(4)U8 sulfurtra 97.6 0.00027 5.9E-09 81.2 10.3 144 349-560 178-333 (482)
115 PRK10660 tilS tRNA(Ile)-lysidi 97.6 0.00027 5.8E-09 80.2 9.6 75 339-448 8-84 (436)
116 COG0037 MesJ tRNA(Ile)-lysidin 97.4 0.00069 1.5E-08 72.7 10.2 145 349-561 22-187 (298)
117 COG1365 Predicted ATPase (PP-l 97.4 0.00086 1.9E-08 67.0 9.4 152 349-571 61-221 (255)
118 COG0367 AsnB Asparagine syntha 97.4 0.00043 9.3E-09 80.5 8.4 161 329-553 213-374 (542)
119 PRK13794 hypothetical protein; 97.2 0.0024 5.3E-08 73.2 11.7 75 336-448 236-310 (479)
120 PRK13795 hypothetical protein; 97.1 0.0018 4E-08 76.8 10.0 77 334-449 230-306 (636)
121 TIGR03679 arCOG00187 arCOG0018 97.1 0.00064 1.4E-08 70.0 5.3 24 425-448 42-65 (218)
122 PRK02090 phosphoadenosine phos 97.0 0.0032 7E-08 65.8 9.5 74 337-449 30-103 (241)
123 PF01507 PAPS_reduct: Phosphoa 97.0 0.0042 9.2E-08 60.7 9.8 62 351-450 2-63 (174)
124 COG0301 ThiI Thiamine biosynth 97.0 0.007 1.5E-07 66.7 12.3 160 349-577 176-356 (383)
125 PRK08557 hypothetical protein; 96.7 0.018 4E-07 64.7 12.7 78 333-448 164-243 (417)
126 cd01986 Alpha_ANH_like Adenine 96.5 0.0049 1.1E-07 55.5 6.0 18 351-368 1-18 (103)
127 TIGR02039 CysD sulfate adenyly 96.4 0.012 2.7E-07 63.0 8.8 67 349-449 20-86 (294)
128 COG2117 Predicted subunit of t 96.3 0.043 9.3E-07 52.9 10.9 59 351-449 3-61 (198)
129 TIGR00434 cysH phosophoadenyly 95.9 0.074 1.6E-06 54.4 11.5 61 349-447 14-74 (212)
130 PRK05370 argininosuccinate syn 95.8 0.011 2.3E-07 66.1 5.1 67 347-451 10-77 (447)
131 COG0137 ArgG Argininosuccinate 95.6 0.02 4.2E-07 62.6 5.9 66 348-451 4-70 (403)
132 PRK12563 sulfate adenylyltrans 95.5 0.094 2E-06 56.7 10.6 68 348-449 37-104 (312)
133 PF00764 Arginosuc_synth: Argi 95.5 0.0099 2.1E-07 65.9 3.3 63 352-452 1-64 (388)
134 TIGR00289 conserved hypothetic 95.2 0.017 3.7E-07 59.6 3.6 26 424-449 43-68 (222)
135 COG0175 CysH 3'-phosphoadenosi 93.8 0.21 4.6E-06 52.9 8.1 63 350-450 41-103 (261)
136 TIGR02057 PAPS_reductase phosp 92.8 0.29 6.3E-06 50.7 7.2 57 348-441 25-81 (226)
137 cd01984 AANH_like Adenine nucl 90.7 0.36 7.8E-06 41.5 4.4 18 351-368 1-18 (86)
138 KOG1706 Argininosuccinate synt 89.2 0.54 1.2E-05 49.9 4.9 63 346-448 3-66 (412)
139 COG2102 Predicted ATPases of P 88.0 0.66 1.4E-05 47.5 4.6 63 350-449 2-69 (223)
140 TIGR00290 MJ0570_dom MJ0570-re 86.5 0.48 1E-05 49.0 2.6 21 427-447 46-66 (223)
141 TIGR03183 DNA_S_dndC putative 86.3 0.65 1.4E-05 52.8 3.7 20 349-368 14-33 (447)
142 PRK06850 hypothetical protein; 85.3 1 2.2E-05 51.9 4.8 20 349-368 35-54 (507)
143 PF01902 ATP_bind_4: ATP-bindi 79.9 0.76 1.7E-05 47.4 1.0 21 428-448 47-67 (218)
144 KOG0573 Asparagine synthase [A 76.8 1.5 3.2E-05 49.0 2.1 22 347-368 249-270 (520)
145 COG3969 Predicted phosphoadeno 75.1 4.7 0.0001 43.8 5.2 24 347-370 26-49 (407)
146 KOG2840 Uncharacterized conser 59.4 22 0.00047 38.6 6.3 74 349-452 52-125 (347)
147 PLN02309 5'-adenylylsulfate re 58.7 1.2E+02 0.0025 35.0 12.5 31 415-445 138-168 (457)
148 TIGR02055 APS_reductase thiore 50.1 20 0.00044 36.0 4.2 35 413-447 19-53 (191)
149 TIGR00424 APS_reduc 5'-adenyly 41.4 45 0.00097 38.4 5.7 32 414-445 142-173 (463)
150 TIGR00542 hxl6Piso_put hexulos 30.7 42 0.0009 35.5 3.1 60 20-84 91-150 (279)
151 PRK13210 putative L-xylulose 5 29.3 46 0.001 35.0 3.1 60 20-84 91-150 (284)
152 PF01261 AP_endonuc_2: Xylose 27.1 46 0.00099 32.8 2.5 60 22-84 70-129 (213)
153 PRK13209 L-xylulose 5-phosphat 26.7 55 0.0012 34.5 3.2 60 20-84 96-155 (283)
154 PF08111 Pea-VEAacid: Pea-VEAa 26.1 26 0.00057 19.9 0.3 12 651-662 2-13 (15)
155 COG4825 Uncharacterized membra 21.4 1.2E+02 0.0025 32.6 4.2 95 339-452 199-310 (395)
156 COG2205 KdpD Osmosensitive K+ 21.0 2.5E+02 0.0055 34.6 7.2 77 349-459 249-331 (890)
157 KOG2774 NAD dependent epimeras 20.7 3.5E+02 0.0077 28.4 7.3 42 625-687 285-326 (366)
158 PRK09856 fructoselysine 3-epim 20.5 78 0.0017 33.2 2.8 62 18-84 85-146 (275)
159 PF11230 DUF3029: Protein of u 20.0 79 0.0017 35.9 2.7 56 622-694 109-164 (487)
No 1
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=7e-201 Score=1574.70 Aligned_cols=698 Identities=61% Similarity=1.038 Sum_probs=676.8
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCc
Q 004727 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~ 80 (733)
|+.++||+|++|+|++||++|.+||++.|++|++.||.+.+.|||.+|||+|+|||++.|+..|+|+.|.+|.....+++
T Consensus 2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~HswE~l~~l~~~~~~~~ 81 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLLHSWEMLAELVESPVTQD 81 (706)
T ss_pred CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHHHHHHHHHHHHcCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred eeeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccc
Q 004727 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (733)
Q Consensus 81 i~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~ 160 (733)
|++.+|||++|++..|||++++.||+|+.+++|+.|+++|+|+|.|||+||.+...+|+|.||..|++.++|.+|||||.
T Consensus 82 il~diGmPv~hr~~ryNCrv~~~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPfGda 161 (706)
T KOG2303|consen 82 ILCDIGMPVMHRNVRYNCRVLFLNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVPFGDA 161 (706)
T ss_pred eeEecCCchhhhhhhhccceeecCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeecccce
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred eeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceee
Q 004727 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (733)
Q Consensus 161 vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~ 240 (733)
|+++.++.||.+||||+|.|.+|+..|+++|+|||+|.|+||++++|.+.|.+++...+.++|+.|+|+|+.||+|+++|
T Consensus 162 vl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG~RlY 241 (706)
T KOG2303|consen 162 VLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDGDRLY 241 (706)
T ss_pred eeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhhcCCCCccceecccccccCccCCCCCCCc
Q 004727 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (733)
Q Consensus 241 fdG~S~I~p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 320 (733)
|||||+|+.||+++||+.+|+.+|++|++|+|||++++.+|...++.+..+..+..|++|+|+|+++...+....++.|+
T Consensus 242 ydGca~Ia~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~ 321 (706)
T KOG2303|consen 242 YDGCAMIAMNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPI 321 (706)
T ss_pred ecchhheeecceeeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCc
Confidence 99999999999999999999999999999999999999999776554433333367999999999986544333788999
Q ss_pred ccccCCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCC
Q 004727 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400 (733)
Q Consensus 321 ~~~~~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~ 400 (733)
++.+|+|+|||+.||+|||||||||||..||+|+||||+||+.+|+||++||++|++|+.+|+++|++|+++|.++ .++
T Consensus 322 e~~~hsPeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~ 400 (706)
T KOG2303|consen 322 EWKYHSPEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISY 400 (706)
T ss_pred ccccCCcHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887 458
Q ss_pred CCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccc
Q 004727 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480 (733)
Q Consensus 401 ~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a 480 (733)
.|++|++|||++++||||+|+|||++|+.+|++||+++|++|..|+||.+|.++++.|.-++|++|.|+++||+++++++
T Consensus 401 ~p~dp~~l~nri~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~enla 480 (706)
T KOG2303|consen 401 TPTDPADLCNRILYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNRENLA 480 (706)
T ss_pred CCCCHHHHHHhhhhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCC
Q 004727 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY 560 (733)
Q Consensus 481 ~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~ 560 (733)
+||||||+||++.|+|||++||++++.||+|||||+|+||.++||.|||+|||+||||||+|+|+|+|+|++|+.+++|+
T Consensus 481 LQNiQARiRMvLaylfAqL~~wvr~~~GglLVLGSaNVDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a~~~~~l 560 (706)
T KOG2303|consen 481 LQNIQARIRMVLAYLFAQLLLWVRGRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYAKEKFGL 560 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCccchHhhhhhhhccccccccCCccCccHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCCcccccccc-cccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhh
Q 004727 561 SSLAEIEAAPPTAELEPIRS-NYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFF 639 (733)
Q Consensus 561 p~l~~i~~~~psaeL~p~~~-~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~ 639 (733)
|+|++|+++||||||+|+++ ++.||||+||||||+||+.|+||||+.+||||+||.+|++.|+++++|+||+||||+||
T Consensus 561 p~L~~il~a~pTAELePl~~g~~~QtDE~dmGmTY~ELsv~GrlRK~~~cGPysMF~kLl~~W~~klsp~qvaEKVk~FF 640 (706)
T KOG2303|consen 561 PALQSILDAPPTAELEPLTDGDYSQTDEADMGMTYAELSVFGRLRKVSKCGPYSMFCKLLHQWGDKLSPRQVAEKVKRFF 640 (706)
T ss_pred hHHHHHhcCCCcccccccccCcccccchhhhCccHHHHHHhHhhccccccCcHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 99999999999999999987 89999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccccHHHHHHhhhCCCCC
Q 004727 640 KYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEKVP 699 (733)
Q Consensus 640 ~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (733)
.+|++||||||++|||||+|+|||||||||+||||||++|||||++||+++.++|+...+
T Consensus 641 ~~Y~iNRHKmTvlTPsyHAE~YspeDnRfDlRpFLynp~w~wqfkkIde~v~~~e~~~~~ 700 (706)
T KOG2303|consen 641 SYYSINRHKMTVLTPSYHAENYSPEDNRFDLRPFLYNPSWPWQFKKIDEQVEQLEANSTK 700 (706)
T ss_pred hhheeccccceecccccccccCCCccccccccccccCCCCchHHHHHHHHHHHhhhccCc
Confidence 999999999999999999999999999999999999999999999999999999986554
No 2
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=6.6e-162 Score=1412.09 Aligned_cols=697 Identities=80% Similarity=1.318 Sum_probs=650.3
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCc
Q 004727 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~ 80 (733)
|++||||+||+|++++|+++|+++|+++|++|+++||+|+|||||++|||+|+|++.+.++..++++.|++|++.+++++
T Consensus 1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~~~~~L~~La~~a~~~~ 80 (700)
T PLN02339 1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTHSWECLAEILVGDLTDG 80 (700)
T ss_pred CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHHHHHHHHHHHhhcccCC
Confidence 88999999999999999999999999999999999999999999999999999999988888888999999999877889
Q ss_pred eeeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccc
Q 004727 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (733)
Q Consensus 81 i~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~ 160 (733)
|++++|+|+.+++++|||++++.+|+|+++|+|+|||++++|+|+|||+||+.....+.+.+|..+.++.|+..+|||+.
T Consensus 81 i~vvvG~p~~~~~~lYN~a~vi~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg~~ 160 (700)
T PLN02339 81 ILCDIGMPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDG 160 (700)
T ss_pred eEEEEeeeEEECCeEEEEEEEEeCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccCcc
Confidence 99999999988889999999999999999999999999999999999999986544567888888889999989999999
Q ss_pred eeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceee
Q 004727 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (733)
Q Consensus 161 vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~ 240 (733)
+|+++|++||++||||+|+|+.++..++++|||||+|+|+||+..||...|++++..++..+++.|||||++|+++++++
T Consensus 161 ~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~yvyaN~~Ge~~~~lv 240 (700)
T PLN02339 161 YLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLY 240 (700)
T ss_pred eeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcEEEEcCCccCCCceE
Confidence 99999999999999999999877666999999999999999999999999999999999999999999999998877899
Q ss_pred ecceeEEEEcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhhcCCCCccceecccccccCccCCCCCCCc
Q 004727 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (733)
Q Consensus 241 fdG~S~I~p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 320 (733)
|+|+|+|+|+|++++++++|+++++++++++||++.++..|.+...+.........++++.++|+++........+.+++
T Consensus 241 f~G~S~I~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (700)
T PLN02339 241 YDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPL 320 (700)
T ss_pred EcCceEEeCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhhhhcccccceeEEeeccCCccccccCCCCcc
Confidence 99999999999999999999875567999999999998888776555433222233567778887753211111256677
Q ss_pred ccccCCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCC
Q 004727 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400 (733)
Q Consensus 321 ~~~~~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~ 400 (733)
++.++.|+|||+.+++|||||||+++|++|+|||||||+|||++|+||++||+++++|++.|+++|+.+++|+.+.+..+
T Consensus 321 ~~~~~~p~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~ 400 (700)
T PLN02339 321 KIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGE 400 (700)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccc
Confidence 88889999999999999999999999999999999999999999999999999999999888999999999999988888
Q ss_pred CCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccc
Q 004727 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480 (733)
Q Consensus 401 ~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a 480 (733)
+|.++++|++++++||+||+.+||++|+++|++||+.||++|++|+|+++++++.+.+...+|+.|.|+++||.+.+|++
T Consensus 401 ~~~~~~~~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~d~~ 480 (700)
T PLN02339 401 VPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAENLA 480 (700)
T ss_pred cccchhhhhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999998889999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCC
Q 004727 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY 560 (733)
Q Consensus 481 ~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~ 560 (733)
+||+|||+||+++|++||+++|++++.|++|||||||+||.++||+|||||+++++|||++|+|++||+|++|+++.++.
T Consensus 481 ~~NiQAR~R~~~l~~~A~l~~~~~~~~g~~LvlgTgN~sE~~~Gy~T~ygd~~~~~~pi~~l~Kt~v~~l~~~~~~~~~~ 560 (700)
T PLN02339 481 LQNIQARIRMVLAFMLASLLPWVRGKSGFLLVLGSANVDEGLRGYLTKYDCSSADINPIGGISKQDLRSFLRWAATNLGY 560 (700)
T ss_pred hhcccHHHHHHHHHHHHhhcchhhccCCceEEEcCCCcchhheeeeeecCCCCcCccccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998876799999999999999999999999999999999999999999999998999
Q ss_pred ccchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhh
Q 004727 561 SSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFK 640 (733)
Q Consensus 561 p~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~ 640 (733)
|+|++|+++||||||+|++++++|+||+||||||++||.|++||+..++||++||.++.++|++.|++++|++|||+||+
T Consensus 561 ~il~~i~~~~pSaEL~p~~~~~~Q~dE~~lG~~Y~~l~~~~~l~~~~~~~p~~i~~~~~~~~~~~y~~~~i~~~~~~F~~ 640 (700)
T PLN02339 561 PSLAEVEAAPPTAELEPIRDDYSQTDEEDMGMTYEELGVYGRLRKIFRCGPVSMFKNLCHEWNGRLSPSEVAAKVKDFFK 640 (700)
T ss_pred CcHHHHhcCCCCcccccCCCCCCCCCHHHHCcCHHHHHHHHHHHhccCCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 99999999999999999877779999999999999999999999999999999999999999888999999999999999
Q ss_pred eeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccccHHHHHHhhhCCC
Q 004727 641 YYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELDGEK 697 (733)
Q Consensus 641 ~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (733)
+|++|||||+.+|||||+|+|||||||||+||||||++|||||++||++|++++.+.
T Consensus 641 ~f~~nq~Kr~~~~p~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (700)
T PLN02339 641 YYSINRHKMTTLTPSYHAESYSPDDNRFDLRQFLYNTRWPYQFRKIDELVEELDGET 697 (700)
T ss_pred HHHHhhccccccCCccccCCCCCCCCcccccccccCCCCchhHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999998654
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=2.5e-110 Score=980.07 Aligned_cols=622 Identities=23% Similarity=0.303 Sum_probs=531.0
Q ss_pred ceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCce
Q 004727 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGI 81 (733)
Q Consensus 2 ~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i 81 (733)
.+||||++|++++++|+++|+++|+++|++|+++||+|||||||++|||+|+|++.+.++.+.+++.++.|++.++++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~~~~~l~~L~~~a~~~~i 90 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDAVEDALATLVEASADLDP 90 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHhhHHHHHHHHHHHhhcCE
Confidence 46999999999999999999999999999999999999999999999999999998878877778888899888878899
Q ss_pred eeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccc-cc
Q 004727 82 LCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFG-YG 160 (733)
Q Consensus 82 ~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG-~~ 160 (733)
++++|+|+..++++|||+++|.+|+|+++|+|+|||++++|+|+|||+||+... .....+.|+ .+||| +.
T Consensus 91 ~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~--------~~~~~~~g~-~vpfG~~~ 161 (679)
T PRK02628 91 LLVVGAPLRVRHRLYNCAVVIHRGRILGVVPKSYLPNYREFYEKRWFAPGDGAR--------GETIRLCGQ-EVPFGTDL 161 (679)
T ss_pred EEEEeeEEEECCEEEEEEEEEcCCEEEEEeccccCCCCCcccccccccCCCCCC--------CceEeecCe-eeccCCce
Confidence 999999988889999999999999999999999999999999999999998531 001123454 99999 57
Q ss_pred eeee---ehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCC-CCCC
Q 004727 161 FIQF---LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ-GCDG 236 (733)
Q Consensus 161 vf~~---~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~-G~~~ 236 (733)
+|++ +++|||++||||+|||+.+.+.++++|||||+|||+||+..+|...|..+++.+|.+++++|||+|++ |+++
T Consensus 162 vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~ 241 (679)
T PRK02628 162 LFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGEST 241 (679)
T ss_pred eEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCC
Confidence 7876 68999999999999999877899999999999999999999998888889999999999999999975 5555
Q ss_pred ceeeecceeEEEEcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhh---cCCCCccceecccccccCccC
Q 004727 237 GRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQAS---CKTKIPSVAVPYNLCQPFNLK 313 (733)
Q Consensus 237 ~~~~fdG~S~I~p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~ 313 (733)
++++|+|+|+|+++|++++++++|+++ +++++++||++.++..|.+...+..... ....+.+| +|+++.+....
T Consensus 242 ~~~vf~G~S~I~~~G~vla~a~~f~~~-e~l~~adiDl~~v~~~R~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~ 318 (679)
T PRK02628 242 TDLAWDGQTLIYENGELLAESERFPRE-EQLIVADVDLERLRQERLRNGSFDDNARHRDESAPFRTI--PFALDPPAGDL 318 (679)
T ss_pred CCeEEeCeEEEEcCCeEEEecCCCCCC-CcEEEEEEcHHHHHHHHhhcCCcccchhcccccCCceEE--EeeccCCcccc
Confidence 679999999999999999999999764 4799999999999887765433321110 00224444 44443322111
Q ss_pred CCCCCCcccccCCcc---------hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHH---Hhc
Q 004727 314 MSLSSPLKINYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKE---ISN 381 (733)
Q Consensus 314 ~~~~~~~~~~~~~~~---------eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~a---l~~ 381 (733)
.+.+++++.||.|. ++++.++++||+||++++|.+|+|||||||+||+++|+++ +++ ++.
T Consensus 319 -~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~-------~~a~~~lg~ 390 (679)
T PRK02628 319 -GLRRPVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVA-------AKAMDRLGL 390 (679)
T ss_pred -cccCcCCCCCCCCcChhhhhhhHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHHhhCC
Confidence 23456667677775 6788889999999999999999999999999999988887 444 321
Q ss_pred CchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhh
Q 004727 382 GDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL 461 (733)
Q Consensus 382 G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~ 461 (733)
+.++ +++|+||+.++|+.|.++|+++|+.||++|.+|+|+++++++...+...
T Consensus 391 ~~~~---------------------------v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~~~l~~~ 443 (679)
T PRK02628 391 PRKN---------------------------ILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHP 443 (679)
T ss_pred Ccce---------------------------EEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHHHHhccc
Confidence 1222 6899999999999999999999999999999999999998876655421
Q ss_pred hCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccc-cCCCCCCCCCC
Q 004727 462 TGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKY-DCSSADINPIG 540 (733)
Q Consensus 462 ~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~-gd~~~~i~Pi~ 540 (733)
|. +|.+.++++.||+|||+||.++|.+|+.. |.+||||||+||.++||+|+| ||++++++||+
T Consensus 444 ------~~--~~~~~~~~t~~N~qaR~R~~~L~~~An~~--------g~lvl~Tgn~sE~~~Gy~T~~~GD~~~~~~~~~ 507 (679)
T PRK02628 444 ------FA--RGEPVYDVTFENVQAGERTQILFRLANQH--------GGIVIGTGDLSELALGWCTYGVGDHMSHYNVNA 507 (679)
T ss_pred ------cc--cCCcccchhhhhhhHHHHHHHHHHHHhhc--------CcEEEcCCchhhHHhCceecCCCCccccccccc
Confidence 21 12345789999999999999999999865 459999999999999999999 99999999999
Q ss_pred CCcHHhHHHHHHHHHhhc--C---CccchhhhcCCCCcccccc-c-ccccccccccccCChhhhhhhcccccccccchhh
Q 004727 541 SISKQDLRTFLRWAATHL--G---YSSLAEIEAAPPTAELEPI-R-SNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVT 613 (733)
Q Consensus 541 ~l~K~~vr~l~~~~~~~~--g---~p~l~~i~~~~psaeL~p~-~-~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~ 613 (733)
+|+||+||+|++|++++. + .++|++|+++||||||+|. + +++.|+||++|| ||+.||.|+......+.+|.+
T Consensus 508 ~l~Kt~v~~l~~~~~~~~~~~~~~~~ip~~i~~~~psaeL~p~~~~g~~~q~ded~lg-pY~~~D~~l~~~~~~~~~~~~ 586 (679)
T PRK02628 508 SVPKTLIQHLIRWVIASGQFDEAVSEVLLDILDTEISPELVPADKEGEIVQSTEDIIG-PYELQDFFLYYFLRYGFRPSK 586 (679)
T ss_pred CCcHHHHHHHHHHHHhhccccccchhhHHHHhcCCCCccccCCCCCCCCCCcchhccC-CHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999997642 2 2578999999999999995 2 345699999998 999999999988888999999
Q ss_pred HhHHHHHhhcC---------------CCChhHHHHHHHhhhheeeeccceeeecCccccccC-CCCCCCccchhhhhhcc
Q 004727 614 MFKNLCYRWGA---------------RLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAES-YSPDDNRFDLRQFLYNA 677 (733)
Q Consensus 614 ~~~~l~~~~~~---------------~~~~~~i~~~v~~f~~~~~~n~hK~~~~~ps~h~~~-~~~d~~r~d~r~~~~~~ 677 (733)
++.++.+.|++ .|++++|..+++.||+++.+|||||.+.||++|..+ .|+ |+|.++
T Consensus 587 i~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~f~~~~~~~qfKR~~~p~g~kv~~~~~l-----s~~~~~--- 658 (679)
T PRK02628 587 IAFLAWHAWKDAERGAWPGFPEDKRPAYDLATIKKWLEVFLRRFFSSQFKRSALPNGPKVGSGGSL-----SPRGDW--- 658 (679)
T ss_pred HHHHHHHHhhccccccCCCCcchhcccCCHHHHHHHHHHHcchhchHhhCcccCCCCCeeCCCCCC-----CCCccc---
Confidence 99999999976 799999999999999999999999999999999999 999 899998
Q ss_pred cCcc--ccccHHHHHHhhhC
Q 004727 678 RWPY--QFRKIDELVKELDG 695 (733)
Q Consensus 678 ~~~~--~~~~~~~~~~~~~~ 695 (733)
|||+ +++...+||++|+.
T Consensus 659 r~P~~~~~~~~~~el~~~~~ 678 (679)
T PRK02628 659 RAPSDASAAAWLDELERLVP 678 (679)
T ss_pred cCcchhhhHHHHHHHHhhcC
Confidence 9999 88888888888763
No 4
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=1.7e-97 Score=856.02 Aligned_cols=524 Identities=27% Similarity=0.338 Sum_probs=459.3
Q ss_pred eceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceee
Q 004727 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (733)
Q Consensus 4 ~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~i 83 (733)
||||++|+++.++|+++|+++|+++|++|+++|||||||||+++|||.++|++...++...+.+.+.+|++.++ +++.+
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~La~~~~-~~i~i 79 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLAACEAALERLAAATA-GGPAV 79 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHHHHHHHHHHHHHHhcC-CCCEE
Confidence 79999999999999999999999999999999999999999999999999988777777777788999999875 79999
Q ss_pred ecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccceee
Q 004727 84 SFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (733)
Q Consensus 84 ivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~vf~ 163 (733)
++|+|++.++++||++++|.+|+|++.|+|+|||++++|+|.+||++|+.. .+|+
T Consensus 80 i~G~~~~~~~~~yNsa~vi~~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~~-------------------------~~~~ 134 (540)
T PRK13981 80 LVGHPWREGGKLYNAAALLDGGEVLATYRKQDLPNYGVFDEKRYFAPGPEP-------------------------GVVE 134 (540)
T ss_pred EEeCcEeeCCcEEEEEEEEECCeEEEEEeeeeCCCCCCcCccccccCCCCc-------------------------eEEE
Confidence 999999888999999999999999999999999999999999999999754 4688
Q ss_pred eehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceeeecc
Q 004727 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243 (733)
Q Consensus 164 ~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~fdG 243 (733)
++++|||+.||+|+|+|+ +.+.++++|||||++|++|++..++...|..+++.+|.+|++++++||++|.+ ++.+|+|
T Consensus 135 ~~g~rigv~IC~D~~~pe-~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~-~~~~f~G 212 (540)
T PRK13981 135 LKGVRIGVPICEDIWNPE-PAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ-DELVFDG 212 (540)
T ss_pred ECCEEEEEEEehhhcCCc-HHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC-CceEEeC
Confidence 899999999999999997 67899999999999999999988888888889999999999999999999988 6788999
Q ss_pred eeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccchhhHHhhhhcCCCCccceecccccccCccCCCCCCCccc
Q 004727 244 CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKI 322 (733)
Q Consensus 244 ~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 322 (733)
.|+|+ |+|+++++++.|++ +++++++|++... ++. +. + +..|
T Consensus 213 ~S~i~dp~G~il~~~~~~~e---~~l~~did~~~~~--------~~~----------~~--~-----------~~~~--- 255 (540)
T PRK13981 213 ASFVLNADGELAARLPAFEE---QIAVVDFDRGEDG--------WRP----------LP--G-----------PIAP--- 255 (540)
T ss_pred ceEEECCCCCEeeecCCCCC---cEEEEEEeecCCC--------ccc----------CC--C-----------CCCC---
Confidence 99999 99999999999854 6889999986311 110 00 0 0000
Q ss_pred ccCCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCC
Q 004727 323 NYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFP 402 (733)
Q Consensus 323 ~~~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p 402 (733)
+...+++++.++++||+||++++|.++++||||||+|||++|+|+ +++++ +++
T Consensus 256 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la-------~~a~g--~~~----------------- 308 (540)
T PRK13981 256 -PPEGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIA-------VDALG--AER----------------- 308 (540)
T ss_pred -CCChHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHhC--cCc-----------------
Confidence 123467899999999999999999999999999999999999997 67763 443
Q ss_pred CChHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchh
Q 004727 403 TDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ 482 (733)
Q Consensus 403 ~~~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~ 482 (733)
+++++||+.++++.+.++|+++|+.||++|++++|+++++++.+.+....+ + ...+++.+
T Consensus 309 ----------v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~---------~-~~~~~~~~ 368 (540)
T PRK13981 309 ----------VRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEAALAPLFA---------G-TEPDITEE 368 (540)
T ss_pred ----------EEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhhc---------C-CCCCchHH
Confidence 589999999999999999999999999999999999999998877665321 1 13578999
Q ss_pred hHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhc-CCc
Q 004727 483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHL-GYS 561 (733)
Q Consensus 483 NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~-g~p 561 (733)
|+|||+||.++|++||.. +.+|+||+|+||.++||+|||||++++++||++|+|++|++|++|+++.. +.+
T Consensus 369 N~~ar~R~~~l~~~a~~~--------~~lvlgt~n~sE~~~Gy~t~~GD~~~~~~pi~~l~K~~v~~la~~~~~~~~~~~ 440 (540)
T PRK13981 369 NLQSRIRGTLLMALSNKF--------GSLVLTTGNKSEMAVGYATLYGDMAGGFAPIKDVYKTLVYRLCRWRNTVSPGEV 440 (540)
T ss_pred HHHHHHHHHHHHHHHhcc--------CCEEEeCCccCHHHcCCeEecCCcccCccccCCCCHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999865 56999999999999999999999999999999999999999999988643 345
Q ss_pred cchhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhhe
Q 004727 562 SLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKY 641 (733)
Q Consensus 562 ~l~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~ 641 (733)
+|++|+++|||||||| +|+||++|| ||++||.|++.....+.+|.++.. .+++++ .+++++++
T Consensus 441 vp~~i~~~~psa~l~~-----~q~de~~l~-~Y~~lD~~l~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~~~ 503 (540)
T PRK13981 441 IPERIITKPPSAELRP-----NQTDQDSLP-PYDVLDAILERLVEEEQSVAEIVA-------AGFDRA----TVRRVERL 503 (540)
T ss_pred chHHHhCCCCCCCCCC-----CCcCccccC-CHHHHHHHHHHHHHcCCCHHHHHH-------cCCCHH----HHHHHHHH
Confidence 7799999999999999 999999999 999999999876667777777753 146653 45677778
Q ss_pred eeeccceeeecCccccccCCCCC
Q 004727 642 YSINRHKMTVLTPSYHAESYSPD 664 (733)
Q Consensus 642 ~~~n~hK~~~~~ps~h~~~~~~d 664 (733)
+.+|+|||.+.||++|..+.+++
T Consensus 504 ~~~~~~KR~~~pp~~~~~~~~~~ 526 (540)
T PRK13981 504 LYIAEYKRRQAAPGVKITRRAFG 526 (540)
T ss_pred HHhchhccccCCCcceecCCCCC
Confidence 88999999999999999888883
No 5
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=100.00 E-value=3.3e-54 Score=446.14 Aligned_cols=239 Identities=38% Similarity=0.532 Sum_probs=205.9
Q ss_pred cCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhh
Q 004727 333 FGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRI 412 (733)
Q Consensus 333 ~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~ 412 (733)
..++.||+||++++|.+|+|||||||+|||++|+|+ ++|+ |+++
T Consensus 3 ~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La-------~~Al--g~~~--------------------------- 46 (242)
T PF02540_consen 3 EALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALA-------VKAL--GPDN--------------------------- 46 (242)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHH-------HHHH--GGGE---------------------------
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHH-------HHHh--hhcc---------------------------
Confidence 457899999999999999999999999999999998 6787 4555
Q ss_pred heeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHH
Q 004727 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVL 492 (733)
Q Consensus 413 ~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~ 492 (733)
+++++||+..+++.+.++|+.+|+.||++|.++||+++++++.+.+... ..+++.+|+|||+||.+
T Consensus 47 v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~~~~~--------------~~~~~~~Ni~aR~Rm~~ 112 (242)
T PF02540_consen 47 VLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPIFDAFLKSLEPA--------------DDDLARGNIQARIRMTT 112 (242)
T ss_dssp EEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCChHHHHHHHHHHHHhCCCeeccchHHHHHHHhhhhccc--------------hhhhhhhhHHHHHHHHH
Confidence 5899999999999999999999999999999999999999988877653 15689999999999999
Q ss_pred HHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCCCC
Q 004727 493 AFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPT 572 (733)
Q Consensus 493 ~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~ps 572 (733)
+|++||.. +.+|+||+|+||..+||+|+|||+++|++||++|+|+|||+|++| +|+| ++|+++|||
T Consensus 113 ly~~a~~~--------~~lVlgT~N~sE~~~Gy~T~~GD~~~d~~Pi~~L~K~eV~~la~~----l~ip--~~ii~k~Ps 178 (242)
T PF02540_consen 113 LYALANKY--------NYLVLGTGNKSELLLGYFTKYGDGAGDIAPIADLYKTEVRELARY----LGIP--EEIIEKPPS 178 (242)
T ss_dssp HHHHHHHH--------TEEEBE--CHHHHHHTCSHTTTTTSSSBETTTTS-HHHHHHHHHH----TTCG--HHHHCS--B
T ss_pred HHHHhccc--------ceEEecCCcHHHhhcCcccccCcccccceeeCCcCHHHHHHHHHH----HhhH--HHHhcCCCC
Confidence 99999986 579999999999999999999999999999999999999999776 6766 999999999
Q ss_pred cccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeeccceeee
Q 004727 573 AELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTV 651 (733)
Q Consensus 573 aeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~hK~~~ 651 (733)
||||| +||||++||+||++||.|++ ....+.+|.++... ...++ +.|+++.+++.+|+|||..
T Consensus 179 a~L~~-----gqtDE~elg~~Y~~lD~~l~-~~~~~~~~~~~~~~------~~~~~----~~~~~i~~~~~~~~hKr~~ 241 (242)
T PF02540_consen 179 AGLWP-----GQTDEDELGFSYEELDAILR-LIEEGLSPEEIAEK------LGVDP----EVVERIERLHKRSEHKRRQ 241 (242)
T ss_dssp HHSST-----T-BHHHHHTSTHHHHHHHHH-HHTSSTTHHHHHHT------CTS-H----HHHHHHHHHHHHTGGGGSS
T ss_pred CCCCC-----CCCCHHHhCCCHHHHHHHHH-HHHcCCCHHHHHHh------cCCCH----HHHHHHHHHHHhhhhccCC
Confidence 99999 99999999999999999998 55666777666543 13443 5677778899999999974
No 6
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-52 Score=435.24 Aligned_cols=254 Identities=36% Similarity=0.472 Sum_probs=210.1
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004727 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
++....++.||++|++++|.+|+|||||||+|||++++|+ ++|+++|..
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La-------~~A~~~~~~------------------------ 54 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALA-------VRALGKGDS------------------------ 54 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHH-------HHHhccccc------------------------
Confidence 5667778999999999999999999999999999999998 788853111
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHH
Q 004727 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~ 488 (733)
...+.++.||+...++.+.++|+.+++.||+++.+++|.++++++...+..... +...++++++|+|||+
T Consensus 55 -~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~---------~~~~~~~~~~NikaR~ 124 (268)
T COG0171 55 -KENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLFL---------GIYLEDLALGNIKARL 124 (268)
T ss_pred -hhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhhhhc---------ccchhhHHHhhhhHHH
Confidence 011689999987647788999999999999999999999999997444333211 1135789999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhc
Q 004727 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEA 568 (733)
Q Consensus 489 R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~ 568 (733)
||.++|++||.+ ++||+||+|+||.++||+|||||+++|++||++|+||||++|++ .+|+| ++|++
T Consensus 125 Rm~~lY~~An~~--------~~lVlGTgn~sE~~~Gy~TkyGDg~~d~~Pi~~L~KtqV~~La~----~l~ip--e~I~~ 190 (268)
T COG0171 125 RMVILYAIANKL--------GGLVLGTGNKSELALGYFTKYGDGAVDINPIADLYKTQVYALAR----HLGIP--EEILK 190 (268)
T ss_pred HHHHHHHHHhhc--------CCEEEcCCcHHHHhcCceecccCcccChhhhcCCcHHHHHHHHH----HcCCC--HHHhc
Confidence 999999999865 67999999999999999999999999999999999999999964 57766 99999
Q ss_pred CCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeeccce
Q 004727 569 APPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHK 648 (733)
Q Consensus 569 ~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~hK 648 (733)
|||||||||. ..+|+||++|||||++||.|+..+... ..+.++ +.++++.++|.+|+||
T Consensus 191 k~PTAeL~~~--~~~q~DE~~lg~~Y~~lD~~L~~~~~~---------------~~~i~~----~~~~~i~~~~~~~~~K 249 (268)
T COG0171 191 KPPTADLWPD--EPGQTDEAELGMPYEELDDILYGLLEN---------------GQEISE----ELVKKIERLYKKSEHK 249 (268)
T ss_pred CCCCccccCC--CCCCCCHHHhCCCHHHHHHHHHHhhhh---------------hcccCH----HHHHHHHHHHHHHHhh
Confidence 9999999993 346999999999999999998743221 012332 3455555678899999
Q ss_pred eeecCcccccc
Q 004727 649 MTVLTPSYHAE 659 (733)
Q Consensus 649 ~~~~~ps~h~~ 659 (733)
|. +||.++..
T Consensus 250 R~-~p~~~~~~ 259 (268)
T COG0171 250 RR-LPIGPKIT 259 (268)
T ss_pred hc-CCCCcCcc
Confidence 99 88887765
No 7
>PRK00768 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=3.9e-51 Score=424.31 Aligned_cols=247 Identities=28% Similarity=0.365 Sum_probs=197.5
Q ss_pred CcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHh-cCchhhhhhHhHhccccCCCCCCC
Q 004727 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIS-NGDEQVKADAIRIGHYANGEFPTD 404 (733)
Q Consensus 326 ~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~-~G~~~v~~~~~~~~~~~~~~~p~~ 404 (733)
.+++++ ...++||+||++++|++|+|||||||+|||+||+|+ ++|++ .+.++- . |
T Consensus 17 ~~~~~~-~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~-------~~A~~~~~~~~~------~--------~-- 72 (268)
T PRK00768 17 DPEEEI-RRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLA-------QLAVEELRAETG------D--------D-- 72 (268)
T ss_pred CHHHHH-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHHHhccccc------C--------c--
Confidence 344444 446799999999999999999999999999999986 34443 122110 0 0
Q ss_pred hHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcc-cccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhh
Q 004727 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQN 483 (733)
Q Consensus 405 ~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi-~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~N 483 (733)
...++++.||. +++.+.++|+.+|+.||+ .|.+|+|+++++++.+.+... + ...++++++|
T Consensus 73 -----~~~~~~l~mP~--~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~~~-~----------~~~~~~a~~N 134 (268)
T PRK00768 73 -----DYQFIAVRLPY--GVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALEAA-G----------IELSDFVKGN 134 (268)
T ss_pred -----ceeEEEEECCC--CCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHhhc-C----------CCchhhHHHH
Confidence 00147888986 344578999999999999 799999999999998877541 1 1236799999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccc
Q 004727 484 IQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSL 563 (733)
Q Consensus 484 iqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l 563 (733)
+|||+||.++|++||.. +++|+||+|+||.++||+|||||+++|++||++|+|++||+|++| +|+|
T Consensus 135 iqARlRm~~Ly~~An~~--------~~lvlgT~N~sE~~~Gy~TkyGD~~~d~~pi~~L~KteV~~La~~----l~vP-- 200 (268)
T PRK00768 135 IKARERMIAQYAIAGAT--------GGLVVGTDHAAEAVTGFFTKFGDGGADILPLFGLNKRQGRALLAA----LGAP-- 200 (268)
T ss_pred HHHHHHHHHHHHHHccC--------CCEEEcCCcccHHHhCceeccCCccccchhhcCCcHHHHHHHHHH----hCCC--
Confidence 99999999999999875 569999999999999999999999999999999999999999776 7766
Q ss_pred hhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheee
Q 004727 564 AEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYS 643 (733)
Q Consensus 564 ~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~ 643 (733)
+.|+++||||||||.. .+|+||++||+||++||.|+.. . ..+ +++ |+++.+++.
T Consensus 201 ~~ii~k~Psa~L~~~~--~gq~DE~~lg~~Y~~lD~~L~~------~--------------~~~-~~~---~~~i~~~~~ 254 (268)
T PRK00768 201 EHLYEKVPTADLEDDR--PGLPDEVALGVTYDQIDDYLEG------K--------------PVS-EEA---AETIENWYL 254 (268)
T ss_pred HHHhcCCCCCCcCCCC--CCCCChhhcCCCHHHHHHHHhc------C--------------CCC-HHH---HHHHHHHHH
Confidence 9999999999999732 3899999999999999999842 0 133 233 444455788
Q ss_pred eccceeeecCcc
Q 004727 644 INRHKMTVLTPS 655 (733)
Q Consensus 644 ~n~hK~~~~~ps 655 (733)
+|+|||.. ||.
T Consensus 255 ~~~~Kr~~-p~~ 265 (268)
T PRK00768 255 KTEHKRHL-PIT 265 (268)
T ss_pred HHHHcccC-CCC
Confidence 99999984 443
No 8
>PRK13980 NAD synthetase; Provisional
Probab=100.00 E-value=1.1e-48 Score=411.59 Aligned_cols=251 Identities=31% Similarity=0.423 Sum_probs=215.9
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004727 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+++...+..||++|++++|.++++|+||||+||+++|+|+ .++++ ..+
T Consensus 11 ~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~~~--~~~----------------------- 58 (265)
T PRK13980 11 EKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLA-------VKALG--KEN----------------------- 58 (265)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHhC--ccc-----------------------
Confidence 5667788999999999999999999999999999999987 45552 222
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHH
Q 004727 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~ 488 (733)
+++++||+.+++..+.++|+.+|+.+|++|++++|+++++++...+.. ..+++.+|+++|+
T Consensus 59 ----v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~~---------------~~~~~~~n~~aR~ 119 (265)
T PRK13980 59 ----VLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPD---------------ADRLRVGNIMART 119 (265)
T ss_pred ----eEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHccc---------------ccchHHHHHHHHH
Confidence 589999988888889999999999999999999999988877654421 1357789999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhc
Q 004727 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEA 568 (733)
Q Consensus 489 R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~ 568 (733)
||.++|.+|+.. |.+|+||+|+||.++||+|+|||++++++||++|+|++||+|++| +|+| ++|++
T Consensus 120 R~~~L~~~A~~~--------g~lvlgTgn~sE~~~G~~t~~gD~~~~l~Pl~~l~K~eV~~la~~----lgip--~~i~~ 185 (265)
T PRK13980 120 RMVLLYDYANRE--------NRLVLGTGNKSELLLGYFTKYGDGAVDLNPIGDLYKTQVRELARH----LGVP--EDIIE 185 (265)
T ss_pred HHHHHHHHHhhc--------CCEEEcCCCHhHHHhCCccCCCCcccCcccCCCCcHHHHHHHHHH----HCch--HHHhC
Confidence 999999999875 579999999999999999999999999999999999999999766 6766 99999
Q ss_pred CCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeeccce
Q 004727 569 APPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHK 648 (733)
Q Consensus 569 ~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~hK 648 (733)
+|||||||| +|+||++|||||++||.|++.....+.+|..+...+ +.++ ++|++++++|.+|+||
T Consensus 186 k~psa~L~~-----~q~De~~lg~~Y~~lD~~l~~~~~~~~~~~~i~~~~------~~~~----~~~~~i~~~~~~~~~K 250 (265)
T PRK13980 186 KPPSADLWE-----GQTDEGELGFSYETIDEILYLLFDKKMSREEILEEL------GVPE----DLVDRVRRLVQRSQHK 250 (265)
T ss_pred CCCCcCCCC-----CCCCHHHcCCCHHHHHHHHHHHHHcCCCHHHHHHHh------CCCH----HHHHHHHHHHHHhhhc
Confidence 999999999 999999999999999999976555566666665432 2332 5788888899999999
Q ss_pred eeecCccccccC
Q 004727 649 MTVLTPSYHAES 660 (733)
Q Consensus 649 ~~~~~ps~h~~~ 660 (733)
|. +||++|+.+
T Consensus 251 r~-~p~~~~~~~ 261 (265)
T PRK13980 251 RR-LPPIPKLSG 261 (265)
T ss_pred cc-CCCCcCCCc
Confidence 98 999999743
No 9
>PRK00876 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=5.1e-47 Score=405.24 Aligned_cols=264 Identities=23% Similarity=0.298 Sum_probs=208.0
Q ss_pred hhhcCcchhhhHHhhh-cCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004727 330 EIAFGPGCWLWDYLRR-SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 330 ei~~~~~~~L~dyl~~-sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+....+..||++++++ .++++++|+||||+|||++|+|+ .++++ .++
T Consensus 14 ~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa-------~~a~g--~~~----------------------- 61 (326)
T PRK00876 14 AEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALC-------VRALG--KER----------------------- 61 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHhhC--CCc-----------------------
Confidence 4445577899999999 89999999999999999999987 45552 332
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHH----------HHHhh-hCCC-----Cceee--
Q 004727 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLS----------LFQTL-TGKR-----PCYKV-- 470 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~----------~~~~~-~g~~-----p~~~~-- 470 (733)
+++++||+..++..+.++|+.+|+.+|++|++++|+++++++.. .+... .|.. +.+..
T Consensus 62 ----v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~ 137 (326)
T PRK00876 62 ----VYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGD 137 (326)
T ss_pred ----EEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECchHHHHhhhhhhhHHHHHHHHHHHhcccccccccccccccc
Confidence 58999998777889999999999999999999999999988642 12110 0000 00000
Q ss_pred -----------cCCc----------cccccchhhHHHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccc
Q 004727 471 -----------DGGS----------NVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKY 529 (733)
Q Consensus 471 -----------~gg~----------~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~ 529 (733)
.+++ ...+++.+|+|||+||.++|++||.. ++||+||+|+||.++||+|||
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~aR~Rm~~ly~~A~~~--------~~lVlgT~NksE~~~Gy~Tky 209 (326)
T PRK00876 138 GLNVFSLVVQDPDGEVTRKRLPANAYLQIVAATNFKQRTRKMVEYYHADRL--------NYAVAGTPNRLEYDQGFFVKN 209 (326)
T ss_pred ccccccccccCccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc--------CCEEEcCCchhhHhhCCeeee
Confidence 0000 01268999999999999999999876 579999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCCCCccccccccccccccccc-ccCChhhhhhhcccccccc
Q 004727 530 DCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVD-MGMTYEELSVYGRLRKVFH 608 (733)
Q Consensus 530 gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~psaeL~p~~~~~~Q~DE~~-lG~~Y~~l~~~~~l~~~~~ 608 (733)
||+++|++||++|+||||++|++| +|+| ++|+++||||+|||. +|+||++ |||||++||.|++.. .++
T Consensus 210 GD~~~d~~Pi~~L~Kt~V~~La~~----l~vP--~~Ii~k~PSa~L~~~----~q~de~~~~g~~Y~~lD~~L~~~-~~~ 278 (326)
T PRK00876 210 GDGAADLKPIAHLYKTQVYALAEH----LGVP--EEIRRRPPTTDTYSL----PQTQEEFYFALPYDRMDLCLYAL-NHG 278 (326)
T ss_pred cCccccchhccCCCHHHHHHHHHH----hCCC--HHHhcCCCCcccCCC----CCChhhhhcCCCHHHHHHHHHHh-hcC
Confidence 999999999999999999999766 6766 999999999999963 7999999 899999999999743 456
Q ss_pred cchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeeccceeeecCcc
Q 004727 609 CGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPS 655 (733)
Q Consensus 609 ~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~hK~~~~~ps 655 (733)
.+|..+...+ +++++.|....++.-+++.+|+|||.. ||.
T Consensus 279 ~~~~~~~~~~------g~~~~~v~~v~~~~~~~~~~~~~k~~~-p~~ 318 (326)
T PRK00876 279 VPAEEVAAAL------GLTPEQVERVYRDIEAKRRTTRYLHAP-PLL 318 (326)
T ss_pred CCHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhhhccCC-CCc
Confidence 6666665431 366665544445556689999999974 444
No 10
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=100.00 E-value=2.9e-46 Score=390.06 Aligned_cols=246 Identities=46% Similarity=0.664 Sum_probs=212.0
Q ss_pred chhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHH
Q 004727 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (733)
Q Consensus 328 ~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~ 407 (733)
.++++..+++||++|++++|.++++|+||||+|||++|+|+ .++++ +.+
T Consensus 3 ~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la-------~~~~~--~~~---------------------- 51 (248)
T cd00553 3 LEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALA-------VRALG--REN---------------------- 51 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHH-------HHHhC--ccc----------------------
Confidence 36778889999999999999999999999999999999997 45542 222
Q ss_pred HHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHH
Q 004727 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (733)
Q Consensus 408 ~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR 487 (733)
+++++||+..++..+.++|+.+|+.+|++|++++++++++.+...+.... +....+++.+|+|+|
T Consensus 52 -----v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~----------~~~~~~~~~~n~~ar 116 (248)
T cd00553 52 -----VLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGESG----------GSELEDLALGNIQAR 116 (248)
T ss_pred -----EEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhhhc----------ccchhhHHHHhhHHH
Confidence 58999999888889999999999999999999999999988777665421 123467889999999
Q ss_pred HHHHHHHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhh
Q 004727 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (733)
Q Consensus 488 ~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~ 567 (733)
+||.++|.+|+.+ +.+|+||+|++|..+||+|+|||++++++||++++|++|++|++| +|+| +.|+
T Consensus 117 ~R~~~Ly~~A~~~--------~~~vlgTgn~~E~~~G~~t~~gd~~~~i~Pl~~l~K~eV~~la~~----~~ip--~~i~ 182 (248)
T cd00553 117 LRMVILYALANKL--------GGLVLGTGNKSELLLGYFTKYGDGAADINPIGDLYKTQVRELARY----LGVP--ESII 182 (248)
T ss_pred HHHHHHHHHHHhc--------CCEEEcCCcHhHHHhCCeeccCCcccCccccCCCcHHHHHHHHHH----HCch--HHHh
Confidence 9999999999875 569999999999999999999999999999999999999999766 6666 8999
Q ss_pred cCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeeccc
Q 004727 568 AAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRH 647 (733)
Q Consensus 568 ~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~h 647 (733)
++|||||||| +|+||++||+||++||.|++.....+++|..+.. .....++|++++++|.+|+|
T Consensus 183 ~k~psa~l~~-----~q~de~~lg~~Y~~lD~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~ 246 (248)
T cd00553 183 DKPPSAELWP-----GQTDEDELGMPYEELDQFLYLRLEGGLGPEEILA-----------PGIIEEVVKRVFRLYKKNEH 246 (248)
T ss_pred cCCCCcccCC-----CCCCHHHhCCCHHHHHHHHHHHHhcCCCHhhhhc-----------cCCCHHHHHHHHHHHHhccc
Confidence 9999999999 9999999999999999999877777777744321 12234688899999999999
Q ss_pred ee
Q 004727 648 KM 649 (733)
Q Consensus 648 K~ 649 (733)
||
T Consensus 247 KR 248 (248)
T cd00553 247 KR 248 (248)
T ss_pred cc
Confidence 98
No 11
>PTZ00323 NAD+ synthase; Provisional
Probab=100.00 E-value=1.2e-44 Score=382.25 Aligned_cols=265 Identities=22% Similarity=0.269 Sum_probs=209.6
Q ss_pred CCcchhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCC
Q 004727 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (733)
Q Consensus 325 ~~~~eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~ 404 (733)
|.|+ ++....+.||++||+++|.+++|||||||+|||++|+|+ .+++| .++. |
T Consensus 24 ~~~~-~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa-------~~alg--~~~~---------------~-- 76 (294)
T PTZ00323 24 FNPA-AWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALC-------ARAMR--MPNS---------------P-- 76 (294)
T ss_pred CCHH-HHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHhc--cccC---------------C--
Confidence 4444 455667899999999999999999999999999999997 56664 2210 0
Q ss_pred hHHHHhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhH
Q 004727 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNI 484 (733)
Q Consensus 405 ~~~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~Ni 484 (733)
..+++|++||+ +|++.+.++|+.+|+.+|++|++|||+++++++.+.++...+. ...+++.+|+
T Consensus 77 -----~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~~----------~~~~~~~~n~ 140 (294)
T PTZ00323 77 -----IQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEKAVGI----------KGGAFARGQL 140 (294)
T ss_pred -----ceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhcc----------cchhhHHHhH
Confidence 11258999996 6888999999999999999999999999999998888775432 1245778899
Q ss_pred HHHHHHHHHHHHHhhcccccCCCcEEEEeccCccccc-cccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccc
Q 004727 485 QARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEG-LRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSL 563 (733)
Q Consensus 485 qaR~R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~-~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l 563 (733)
++|+||+++|++||+.. ...-+.||+||+|+||. .+||+|++||++++++||++|+|++||+|++| +|+|
T Consensus 141 ~ar~R~~~lY~la~~~~---~~g~~~lV~GT~N~sE~~~~Gy~t~~GDg~~d~~pia~L~K~eVr~LAr~----l~lp-- 211 (294)
T PTZ00323 141 RSYMRTPVAFYVAQLLS---QEGTPAVVMGTGNFDEDGYLGYFCKAGDGVVDVQLISDLHKSEVFLVARE----LGVP-- 211 (294)
T ss_pred HHHHHhHHHHHHHHHHh---hcCCCeEEECCCCchhhhHhchHhhcCCCCcCchhhcCCcHHHHHHHHHH----cCCC--
Confidence 99999999999998751 11124699999999995 58999999999999999999999999999765 6766
Q ss_pred hhhhcCCCCcccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheee
Q 004727 564 AEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYS 643 (733)
Q Consensus 564 ~~i~~~~psaeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~ 643 (733)
++|+++|||||||+ +|+||+|||+||++||.|+++.....- .+- ..+++.|. .-+-.|..++.+..-..|.
T Consensus 212 ~~i~~kppSA~L~~-----~qtDE~elg~~Y~~lD~~~~~~~~~~~--~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 282 (294)
T PTZ00323 212 ENTLQAAPSADLWE-----GQTDEDELGFPYDFVELYTEWYLKLNE--TEK-KSFLSSLS-EEARKQFEEYSAACELVHR 282 (294)
T ss_pred HHHhcCCCCcCcCC-----CCcCHhhcCCCHHHHHHHHHHHHHhhH--HHH-HHHHHhcC-HHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 999999999999999999986554322 111 11334443 1222344455566666788
Q ss_pred eccceee
Q 004727 644 INRHKMT 650 (733)
Q Consensus 644 ~n~hK~~ 650 (733)
||.||..
T Consensus 283 ~~~~~~~ 289 (294)
T PTZ00323 283 RNAHKLQ 289 (294)
T ss_pred ccccccc
Confidence 9999975
No 12
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=7.6e-45 Score=381.62 Aligned_cols=248 Identities=35% Similarity=0.513 Sum_probs=225.6
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
|||++|+++..+|++.|++++++.+++|+++|||||||||+++|||.+.+.+....+...+.+.++.|++.+++++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~la~~~~~~~i~ii 80 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEAAEEALEELAAATADLDIAVV 80 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHHHHHHHHHHHHhcccCCcEEE
Confidence 79999999999999999999999999999999999999999999999888776666656677889999998888899999
Q ss_pred cCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccceeee
Q 004727 85 FGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQF 164 (733)
Q Consensus 85 vG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~vf~~ 164 (733)
+|+++..++++||+++++.+|++++.|+|+||+++++|.|.+||++|+.. .+|++
T Consensus 81 ~G~~~~~~~~~yNs~~~i~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~-------------------------~~~~~ 135 (261)
T cd07570 81 VGLPLRHDGKLYNAAAVLQNGKILGVVPKQLLPNYGVFDEKRYFTPGDKP-------------------------DVLFF 135 (261)
T ss_pred EeceEecCCCEEEEEEEEeCCEEEEEEECccCcCCccccccccCccCCCC-------------------------CeEEE
Confidence 99999888999999999999999999999999999999999999999853 47899
Q ss_pred ehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceeeecce
Q 004727 165 LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGC 244 (733)
Q Consensus 165 ~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~fdG~ 244 (733)
+++|||+.||+|+|||+.+.+.++++|||+|++|+++++..++...|..+++.||.+|+++++++|++|.+ ++..|.|+
T Consensus 136 ~~~~ig~~IC~D~~fpe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~-~~~~~~G~ 214 (261)
T cd07570 136 KGLRIGVEICEDLWVPDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ-DDLVFDGG 214 (261)
T ss_pred CCEEEEEEeecccCCCCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC-ceEEEECc
Confidence 99999999999999998657899999999999999999877777777788999999999999999999987 67789999
Q ss_pred eEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 245 SCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 245 S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
|+|+ |+|+++++++.+ +.+++++|++.++..|.+
T Consensus 215 S~ii~p~G~vl~~~~~~-----~~~~~~id~~~~~~~r~~ 249 (261)
T cd07570 215 SFIADNDGELLAEAPRF-----EEDLADVDLDRLRSERRR 249 (261)
T ss_pred eEEEcCCCCEEEecCcc-----eEEEEEEEEecCcccccc
Confidence 9999 999999998875 457899999999887754
No 13
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-41 Score=359.39 Aligned_cols=246 Identities=24% Similarity=0.318 Sum_probs=212.0
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
|||++|++++++|++.|++++.+.+++|+++||+||||||+++|||.+.|.+.+.. .....+.++.|++.+ .++.++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~a--~~~~ii 77 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVA-MHADDPRLQALAEAS--GGICVV 77 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhh-cccchHHHHHHHHHc--CCCEEE
Confidence 79999999999999999999999999999999999999999999999887654321 122345677777764 378999
Q ss_pred cCcceeeC-ceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccceee
Q 004727 85 FGMPVIKG-SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (733)
Q Consensus 85 vG~p~~~~-g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~vf~ 163 (733)
+|+++..+ +++||++++|.+|++++.|+|+|||+++.|.|.+||++|+.. .+|+
T Consensus 78 ~G~~~~~~~~~~yNt~~vi~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~~-------------------------~vf~ 132 (269)
T cd07586 78 FGFVEEGRDGRFYNSAAYLEDGRVVHVHRKVYLPTYGLFEEGRYFAPGSHL-------------------------RAFD 132 (269)
T ss_pred EeCeEEcCCCcEEEEEEEecCCEEEEEEEeEeCCCCCccceeeeecCCCcc-------------------------eEEE
Confidence 99998864 899999999999999999999999998888999999999753 5799
Q ss_pred eehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhh-----hhhhHHHHHHhhhccccceEEEeecCCCCCCce
Q 004727 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-----RKLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (733)
Q Consensus 164 ~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~-----gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~ 238 (733)
++++|||+.||+|+|+|+. .+.++.+|||||++||++++.. ++...|..+.+.+|.+|++++|+||++|.+ +.
T Consensus 133 ~~~~~ig~~IC~D~~fp~~-~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-~~ 210 (269)
T cd07586 133 TRFGRAGVLICEDAWHPSL-PYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE-DG 210 (269)
T ss_pred eCCeEEEEEEEeccCCcHH-HHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-CC
Confidence 9999999999999999974 5678999999999999998742 233456778899999999999999999988 55
Q ss_pred eeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 239 ~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
..|.|+|+|+ |+|+++++.+.|++ ++++++||++.++..|..
T Consensus 211 ~~~~G~S~ii~p~G~il~~~~~~~~---~~~~~~id~~~~~~~r~~ 253 (269)
T cd07586 211 VYFWGGSRVVDPDGEVVAEAPLFEE---DLLVAELDRSAIRRARFF 253 (269)
T ss_pred ceEeCCcEEECCCCCEEEecCCccc---cEEEEEecHHHHHHHHhh
Confidence 6788999999 99999999988753 689999999999877654
No 14
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=6.9e-42 Score=362.52 Aligned_cols=248 Identities=21% Similarity=0.276 Sum_probs=207.0
Q ss_pred eceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccc---cc-ccch--hhhHHHHHHHhccCC
Q 004727 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF---LE-LDTV--THAWECLKDLLLGDW 77 (733)
Q Consensus 4 ~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~---~~-~~~~--~~~~~~L~~La~~~~ 77 (733)
||||++|+++. +|+++|++++.++|++|+++|||||||||++++||.+.+.. .. .... ....+.++++++
T Consensus 1 ~~ia~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~--- 76 (279)
T TIGR03381 1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAK--- 76 (279)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHH---
Confidence 68999999986 99999999999999999999999999999999999876531 11 1111 123445666665
Q ss_pred CCceeeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccc
Q 004727 78 TDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (733)
Q Consensus 78 ~~~i~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vp 156 (733)
++++++++|++++.++++||++++|. +|++++.|+|+|||..+.|.|++||++|+..
T Consensus 77 ~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~---------------------- 134 (279)
T TIGR03381 77 ELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTG---------------------- 134 (279)
T ss_pred HcCcEEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCC----------------------
Confidence 47899999999888889999999997 8999999999999976667899999999742
Q ss_pred cccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhh-----hhhhHHHHHHhhhccccceEEEeecC
Q 004727 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-----RKLDYRIRAFISATHSRGGVYMYSNH 231 (733)
Q Consensus 157 fG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~-----gk~~~r~~li~~~A~~~g~~~vyaN~ 231 (733)
..+|+++++|||+.||+|+|||+. .+.++++|||+|++|++++... .....|..+++++|.+|++++++||+
T Consensus 135 --~~~f~~~~~~ig~~IC~D~~fpe~-~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~ 211 (279)
T TIGR03381 135 --FKVWDTRYGRIGVGICWDQWFPET-ARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANR 211 (279)
T ss_pred --CceEecCCceEEEEEEcCCcChHH-HHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEec
Confidence 047899999999999999999974 7799999999999999975321 12345666788999999999999999
Q ss_pred CCCC---CceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 232 QGCD---GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 232 ~G~~---~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
+|.+ +++..|.|.|+|+ |+|+++++++.+++ +++++++|++.++..|..
T Consensus 212 ~G~~~~~~~~~~~~G~S~i~~p~G~il~~~~~~~e---~~~~~~id~~~~~~~r~~ 264 (279)
T TIGR03381 212 IGTEVGDGGEQTFYGSSFIADHTGELVAEAGRSEE---AVLVATFDLDEIAKQRAA 264 (279)
T ss_pred ccccCCCCCcceEeeeEEEECCCCcEeecCCCCCC---ceEEEEeCHHHHHHHHhc
Confidence 9977 3467899999999 99999999988753 789999999999877753
No 15
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=8e-42 Score=357.00 Aligned_cols=240 Identities=23% Similarity=0.264 Sum_probs=207.3
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccc--cchhhhHHHHHHHhccCCCCcee
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL--DTVTHAWECLKDLLLGDWTDGIL 82 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~--~~~~~~~~~L~~La~~~~~~~i~ 82 (733)
|||++|+++..+|+++|++++.++|++|+++|+||+||||++++||.+.+.+.+. .......+.+.++++ +++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~~~ 77 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIAR---RHGIA 77 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHH---HcCCE
Confidence 7999999998999999999999999999999999999999999999987765432 112233444555554 58999
Q ss_pred eecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccce
Q 004727 83 CSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGF 161 (733)
Q Consensus 83 iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~v 161 (733)
+++|+++..++++|||++++. +|+|++.|+|+||++ +.|.+||++|+.. .+
T Consensus 78 ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~~-------------------------~v 129 (254)
T cd07576 78 IVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDRF-------------------------PV 129 (254)
T ss_pred EEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCCc-------------------------eE
Confidence 999999988899999999997 899999999999986 3588999999753 57
Q ss_pred eeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceeee
Q 004727 162 IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYF 241 (733)
Q Consensus 162 f~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~f 241 (733)
|+++++|||+.||+|+|||+ +.+.++++|||||++|++++...+ ..|..+++.||.+|++++++||++|.+ ++..|
T Consensus 130 ~~~~~~kig~~IC~D~~fpe-~~~~~~~~gadii~~p~~~~~~~~--~~~~~~~~~rA~en~~~vv~an~~G~~-~~~~~ 205 (254)
T cd07576 130 VELRGLRVGLLICYDVEFPE-LVRALALAGADLVLVPTALMEPYG--FVARTLVPARAFENQIFVAYANRCGAE-DGLTY 205 (254)
T ss_pred EEECCeEEEEEEeecCCCCH-HHHHHHHCCCCEEEECCccCCCcc--hhhhhhhHHHHHhCCCEEEEEcccCCC-CCcee
Confidence 99999999999999999997 577899999999999998876555 356678899999999999999999988 56679
Q ss_pred cceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 242 DGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 242 dG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
.|+|+|+ |+|+++++++.+ + ++++++||++.++..|.+
T Consensus 206 ~G~S~i~~p~G~il~~~~~~-e---~~~~~~id~~~~~~~R~~ 244 (254)
T cd07576 206 VGLSSIAGPDGTVLARAGRG-E---ALLVADLDPAALAAARRE 244 (254)
T ss_pred eeeeEEECCCCCEeEecCCC-C---eEEEEEcCHHHHHhhhhc
Confidence 9999999 999999999876 3 699999999999888754
No 16
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=5.3e-41 Score=367.56 Aligned_cols=250 Identities=16% Similarity=0.123 Sum_probs=204.0
Q ss_pred ceeceecccccccc-------cccccchhhHHHHHHHHHHcCceeeeCcceeecccccc--cccccccch-----hhhHH
Q 004727 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCE--DHFLELDTV-----THAWE 67 (733)
Q Consensus 2 ~~~kVA~~Qln~~~-------~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~--D~~~~~~~~-----~~~~~ 67 (733)
+.||||++|+++.. +|+++|++++.++|++|+++||+||||||++++||... +......+. ....+
T Consensus 62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~ 141 (363)
T cd07587 62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTK 141 (363)
T ss_pred ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHH
Confidence 46999999998543 59999999999999999999999999999999998632 210001111 12334
Q ss_pred HHHHHhccCCCCceeeecCcceee---CceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCc
Q 004727 68 CLKDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (733)
Q Consensus 68 ~L~~La~~~~~~~i~iivG~p~~~---~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp 143 (733)
.|+++|+ +++|+|++|+.++. ++++||++++|. +|+|++.|+|+|||.++.|.|++||.+|+..
T Consensus 142 ~l~~lAk---~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~--------- 209 (363)
T cd07587 142 FCQELAK---KYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTG--------- 209 (363)
T ss_pred HHHHHHH---HcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCC---------
Confidence 5666665 58999998988775 368999999998 8999999999999988889999999999742
Q ss_pred hHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccc
Q 004727 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (733)
Q Consensus 144 ~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g 223 (733)
..||+++++|||+.||||+|||+. .+.++++|||||++|++|+...++ ..|..++++||.+|+
T Consensus 210 ---------------~~vf~t~~griG~~ICyD~~fPe~-~r~la~~GAdiil~Psa~~~~~~~-~~w~~~~rarAieN~ 272 (363)
T cd07587 210 ---------------HPVFETQFGKIAVNICYGRHHPLN-WLMYGLNGAEIVFNPSATVGALSE-PMWPIEARNAAIANS 272 (363)
T ss_pred ---------------CceEEcCCceEEEEEecccCCcHH-HHHHHHcCCcEEEECCCcCCCCch-HHHHHHHHHHHHhcC
Confidence 158999999999999999999974 678999999999999999865443 356678899999999
Q ss_pred eEEEeecCCCCCC---------------ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 224 GVYMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 224 ~~~vyaN~~G~~~---------------~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
++++++|++|.+. +...|.|+|+|+ |+|+++++++.+. +++++++||++.++..|.+
T Consensus 273 ~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~---E~ll~adiDl~~i~~~R~~ 345 (363)
T cd07587 273 YFTVGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTR---DGLLVAELDLNLCRQVKDK 345 (363)
T ss_pred cEEEEeccccccccccccccccccccccccccccceeEEECCCCCCccCCCCCC---CcEEEEEecHHHHHHHHhc
Confidence 9999999999652 114689999999 9999999887554 3799999999999876643
No 17
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=5.8e-41 Score=355.06 Aligned_cols=252 Identities=27% Similarity=0.308 Sum_probs=208.7
Q ss_pred ceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccc-ccccccchhhhHHHHHHHhccCCCCc
Q 004727 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED-HFLELDTVTHAWECLKDLLLGDWTDG 80 (733)
Q Consensus 2 ~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D-~~~~~~~~~~~~~~L~~La~~~~~~~ 80 (733)
.+||||++|++++.+|+++|++++++++++|+++||+||||||+++|||.+++ ++.+........+.+..+.+.++ .+
T Consensus 1 ~~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~-~~ 79 (274)
T COG0388 1 SMMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAAAEAGEETLEFLAALAE-EG 79 (274)
T ss_pred CceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCcccHHHHHhhhhccCChHHHHHHHHHH-hC
Confidence 36999999999999999999999999999999999999999999999999995 65554444444444444444433 34
Q ss_pred eeeecCcceeeCceeeeeEEEE-ecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccccc
Q 004727 81 ILCSFGMPVIKGSERYNCQVLC-LNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (733)
Q Consensus 81 i~iivG~p~~~~g~lYN~a~vi-~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~ 159 (733)
..+++|.+.......||+++++ .+|++++.|+|+||+++ .|+|+++|.||+...
T Consensus 80 ~~~ivg~~~~~~~~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~------------------------ 134 (274)
T COG0388 80 GVIIVGGPLPEREKLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGV------------------------ 134 (274)
T ss_pred CeEEEEeeeeccccceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccc------------------------
Confidence 5666776665553566666666 69999999999999988 678999999998640
Q ss_pred ceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCcee
Q 004727 160 GFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239 (733)
Q Consensus 160 ~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~ 239 (733)
.+|+++++|+|+.||+|+|||+.....+++.|||+|++|++++...+ ..+|..++++||.+|+++++++|++|.+....
T Consensus 135 ~v~~~~~~kig~~IC~D~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~-~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~ 213 (274)
T COG0388 135 VVFETDGGKIGLLICYDLRFPELARRLLALGGAELLLVPAAWPAERG-LDHWEVLLRARAIENQVYVLAANRAGFDGAGL 213 (274)
T ss_pred eeEEeCCceEEEEEEeeccCHHHHHHHHHhcCCeEEEEcCCCCCccc-HHHHHHHHHHHhhhcCceEEEecccCCCCCcc
Confidence 37999999999999999999984333348889999999999998776 56888899999999999999999999884447
Q ss_pred eecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 240 YFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 240 ~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
.|+|+|+|+ |+|+++++...+. ++++++++|++.+...|..
T Consensus 214 ~~~G~S~i~~p~G~v~~~~~~~~---e~~~~~~id~~~~~~~r~~ 255 (274)
T COG0388 214 EFCGHSAIIDPDGEVLAEAGEEE---EGVLLADIDLAELAEVRRK 255 (274)
T ss_pred EEecceEEECCCccEEeecCCCC---CcEEEEEECHHHHHHHHhh
Confidence 899999999 9999999998873 4799999999999877743
No 18
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=1.5e-40 Score=348.81 Aligned_cols=240 Identities=16% Similarity=0.155 Sum_probs=196.7
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCc
Q 004727 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~ 80 (733)
|++||||++|+++..+|++.|++++.++|++| +|||||||||++++||...+...... ...+.+.|+++|+. ++
T Consensus 1 m~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~~~~~-~~~~~~~l~~~A~~---~~ 74 (256)
T PRK10438 1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAASSLP-QDDVVAWMTAKAQQ---TN 74 (256)
T ss_pred CCCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchhhccc-cchHHHHHHHHHHH---cC
Confidence 88899999999998899999999999999876 79999999999999998765322111 12345667777765 67
Q ss_pred eeeecCcc-eeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccc
Q 004727 81 ILCSFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFG 158 (733)
Q Consensus 81 i~iivG~p-~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG 158 (733)
++ ++|.+ +..++++||++++|+ +|. ++.|+|+||+. .+.|.+||+||+..
T Consensus 75 ~~-i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~--~~~E~~~f~~G~~~------------------------ 126 (256)
T PRK10438 75 AL-IAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFR--MADEHLHYKAGNAR------------------------ 126 (256)
T ss_pred eE-EEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCC--CCCccceecCCCCc------------------------
Confidence 64 45655 455677999999998 565 67999999964 34689999999753
Q ss_pred cceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCce
Q 004727 159 YGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (733)
Q Consensus 159 ~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~ 238 (733)
.+|+++++|||+.||||+|||+. .+. ++|||+|++|++|+.... ..|..++++||.+|++++++||++|.+++.
T Consensus 127 -~v~~~~~~~iG~~ICyD~~fPe~-~r~--l~gad~i~~~s~~~~~~~--~~~~~~~~aRA~En~~~vv~~n~~G~~~~~ 200 (256)
T PRK10438 127 -VIVEWRGWRILPLVCYDLRFPVW-SRN--RNDYDLALYVANWPAPRS--LHWQTLLTARAIENQAYVAGCNRVGSDGNG 200 (256)
T ss_pred -eEEEECCEEEEEEEEeecCCHHH-HHh--hcCCCEEEEecCCCCCch--HHHHHHHHHHHHhcCcEEEEecccccCCCC
Confidence 57999999999999999999974 444 489999999999986432 356668899999999999999999987555
Q ss_pred eeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 239 ~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
..|.|.|+|+ |+|+++++++.++ .+++++++|++.++..|..
T Consensus 201 ~~~~G~S~ivdP~G~vl~~~~~~~---e~~i~~~idl~~~~~~R~~ 243 (256)
T PRK10438 201 HHYRGDSRIINPQGEIIATAEPHQ---ATRIDAELSLEALQEYREK 243 (256)
T ss_pred CEEcCceEEECCCCcEEEEcCCCC---cEEEEEEECHHHHHHHHHh
Confidence 7899999999 9999999988764 3799999999999877743
No 19
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.9e-40 Score=353.35 Aligned_cols=249 Identities=21% Similarity=0.205 Sum_probs=205.1
Q ss_pred ceeceeccccccc-------ccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccc---cc-c-cc-hhhhHHH
Q 004727 2 RLLKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF---LE-L-DT-VTHAWEC 68 (733)
Q Consensus 2 ~~~kVA~~Qln~~-------~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~---~~-~-~~-~~~~~~~ 68 (733)
|.||||++|++.. .+|.+.|++++.+++++|+++|||||||||++++||.+.+.. .+ . +. .....+.
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKR 81 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHH
Confidence 6799999999965 488999999999999999999999999999999999865421 10 0 00 0112333
Q ss_pred HHHHhccCCCCceeeecCcceee-CceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHH
Q 004727 69 LKDLLLGDWTDGILCSFGMPVIK-GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (733)
Q Consensus 69 L~~La~~~~~~~i~iivG~p~~~-~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i 146 (733)
|.++++ ++++++++|+++.. ++++||++++|. +|++++.|+|+|||+++.|.|.+||++|+..
T Consensus 82 l~~~a~---~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~------------ 146 (287)
T cd07568 82 FAALAK---EYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLG------------ 146 (287)
T ss_pred HHHHHH---HCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCC------------
Confidence 455554 58999999987764 478999999998 8999999999999999999999999999732
Q ss_pred HHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEE
Q 004727 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (733)
Q Consensus 147 ~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~ 226 (733)
..+|+++++|||+.||+|+|||+ ..+.++++|||||++||+++...++ ..|..+.+++|.+|++++
T Consensus 147 ------------~~~f~~~~~~iG~~ICyD~~fpe-~~r~la~~Ga~li~~ps~~~~~~~~-~~~~~~~~~rA~en~~~v 212 (287)
T cd07568 147 ------------YPVFDTAFGKIGVYICYDRHFPE-GWRALGLNGAEIVFNPSATVAGLSE-YLWKLEQPAAAVANGYFV 212 (287)
T ss_pred ------------CceEEcCCceEEEEEEecccCch-HHHHHHHCCCeEEEECCcCCCCCch-hhhHHHHHHHHHHCCcEE
Confidence 14788999999999999999997 4778999999999999999764433 244446789999999999
Q ss_pred EeecCCCCCCc--eeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 227 MYSNHQGCDGG--RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 227 vyaN~~G~~~~--~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
+++|++|.+.. ...|.|.|+|+ |+|+++++++.++ +++++++||++.++..|.
T Consensus 213 v~~N~~G~~~~~~~~~~~G~S~ii~p~G~il~~~~~~~---~~~l~a~id~~~~~~~R~ 268 (287)
T cd07568 213 GAINRVGTEAPWNIGEFYGSSYFVDPRGQFVASASRDK---DELLVAELDLDLIREVRD 268 (287)
T ss_pred EEeccccccCCCccceEeceeEEECCCceEEEecCCCC---CeEEEEEecHHHHHHHHh
Confidence 99999997633 25789999999 9999999998875 378999999999987774
No 20
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=100.00 E-value=1.1e-39 Score=340.84 Aligned_cols=235 Identities=31% Similarity=0.430 Sum_probs=188.6
Q ss_pred CcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhh
Q 004727 334 GPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIF 413 (733)
Q Consensus 334 ~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 413 (733)
.+..||++++++.+.++++||||||+||+++|+|+ .++. |.+ +
T Consensus 8 ~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~-------~~~~--~~~----------------------------~ 50 (250)
T TIGR00552 8 EIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC-------VEAL--GEQ----------------------------N 50 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH-------HHhh--CCc----------------------------e
Confidence 35568999999999999999999999999999886 4443 222 2
Q ss_pred eeee-ccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHH
Q 004727 414 YTVF-MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVL 492 (733)
Q Consensus 414 ~~v~-m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~ 492 (733)
+++. +++..++..+.++|+++|+.+|++|+++++++++..+....... .+ ..+.++.+|+++|+||.+
T Consensus 51 ~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~---~~--------~~~~~~~~n~car~R~~~ 119 (250)
T TIGR00552 51 HALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASFQAQTETG---DE--------LSDFLAKGNLKARLRMAA 119 (250)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHHHHHHHHHhccc---cC--------CchHHHHHHHHHHHHHHH
Confidence 4444 44445677899999999999999999999999887543322111 11 123356789999999999
Q ss_pred HHHHHhhcccccCCCcEEEEeccCccccccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCCCC
Q 004727 493 AFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPT 572 (733)
Q Consensus 493 ~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~ps 572 (733)
+|.+|+.+ |.+||+|||.+|.++||+|++||+.++++||++++|++|++++++ +|+| ..|+++|||
T Consensus 120 L~~~A~~~--------g~~~laTgh~~E~~~G~~t~~gd~~~~i~PL~~l~K~eV~~lA~~----~g~p--~~i~~k~ps 185 (250)
T TIGR00552 120 LYAIANKH--------NLLVLGTGNKSELMLGYFTKYGDGGCDIAPIGDLFKTQVYELAKR----LNVP--ERIIEKPPT 185 (250)
T ss_pred HHHHHHhc--------CCEEEcCCcHHHHhhCCeecccCCccCccccCCCcHHHHHHHHHH----HCcc--HHHhCCCCC
Confidence 99999865 569999999999999999999999999999999999999999655 7776 889999999
Q ss_pred cccccccccccccccccccCChhhhhhhcccccccccchhhHhHHHHHhhcCCCChhHHHHHHHhhhheeeeccceeeec
Q 004727 573 AELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVL 652 (733)
Q Consensus 573 aeL~p~~~~~~Q~DE~~lG~~Y~~l~~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~hK~~~~ 652 (733)
||||| +||||+||||||++||.|++.... ...++++ .|+++.++|.+|+|||. +
T Consensus 186 a~L~~-----~q~de~~~g~~y~~~D~~l~~~~~-----------------~~~~~~~---~~~~i~~~~~~~~~kr~-~ 239 (250)
T TIGR00552 186 ADLFD-----GQTDETELGITYDELDDYLKGIEE-----------------LSQTVQE---VVKRIESLVQKSEHKRR-L 239 (250)
T ss_pred cCCCC-----CCcCHHHhCcCHHHHHHHHHHHhh-----------------cCCCHHH---HHHHHHHHHHHHHhccc-C
Confidence 99999 899999999999999999863221 1234444 45555568899999997 5
Q ss_pred Cccc
Q 004727 653 TPSY 656 (733)
Q Consensus 653 ~ps~ 656 (733)
||++
T Consensus 240 ~~~~ 243 (250)
T TIGR00552 240 PATI 243 (250)
T ss_pred CCCc
Confidence 7765
No 21
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=5.5e-40 Score=345.25 Aligned_cols=244 Identities=20% Similarity=0.185 Sum_probs=207.8
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccccc---ccchhhhHHHHHHHhccCCCCce
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE---LDTVTHAWECLKDLLLGDWTDGI 81 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~---~~~~~~~~~~L~~La~~~~~~~i 81 (733)
|||++|+++. +|+++|++++++++++|+++|+|||||||++++||.+.+.... ........+.+.++++. +++
T Consensus 1 kia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~---~~i 76 (265)
T cd07572 1 RVALIQMTST-ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKE---HGI 76 (265)
T ss_pred CEEEEEeeCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHH---CCe
Confidence 7999999987 9999999999999999999999999999999999998776542 23333455666666664 789
Q ss_pred eeecC-cceeeC--ceeeeeEEEEe-cceEEEEecceeecc-----CCCceeeeccccccccccccccCCchHHHHHhcC
Q 004727 82 LCSFG-MPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (733)
Q Consensus 82 ~iivG-~p~~~~--g~lYN~a~vi~-~G~Il~~~~K~~Lp~-----~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~ 152 (733)
++++| ++++.+ +++||+++++. +|+|++.|+|+||++ ...|+|.+||++|+..
T Consensus 77 ~i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~------------------ 138 (265)
T cd07572 77 WLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEV------------------ 138 (265)
T ss_pred EEEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcc------------------
Confidence 99988 666665 88999999998 899999999999953 2236899999999753
Q ss_pred cccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCC
Q 004727 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (733)
Q Consensus 153 ~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~ 232 (733)
.+|+++++|+|+.||+|.|+|+ ..+.++++|||||++|++++...++. +|..+.+.+|.+++++++++|++
T Consensus 139 -------~~~~~~~~~ig~~IC~D~~~pe-~~r~~~~~gadli~~p~~~~~~~~~~-~~~~~~~~rA~e~~~~vv~~n~~ 209 (265)
T cd07572 139 -------VVVDTPFGKIGLGICYDLRFPE-LARALARQGADILTVPAAFTMTTGPA-HWELLLRARAIENQCYVVAAAQA 209 (265)
T ss_pred -------eEEecCCceEEEEEEeccCcHH-HHHHHHHCCCCEEEECCCCCCCcchH-HHHHHHHHHHHhcCCEEEEEccc
Confidence 5789999999999999999997 57889999999999999988766543 46667899999999999999999
Q ss_pred CCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 233 G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
|.+++...|.|.|+|+ |+|+++++++.+ + ++++++||++.++..|.+
T Consensus 210 G~~~~~~~~~G~S~i~~p~G~il~~~~~~-~---~~~~~~id~~~~~~~r~~ 257 (265)
T cd07572 210 GDHEAGRETYGHSMIVDPWGEVLAEAGEG-E---GVVVAEIDLDRLEEVRRQ 257 (265)
T ss_pred ccCCCCCeecceeEEECCCcHHHhhcCCC-C---cEEEEEeCHHHHHHHHHh
Confidence 9876667899999999 999999999876 2 689999999998776643
No 22
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=1.8e-39 Score=348.64 Aligned_cols=251 Identities=20% Similarity=0.219 Sum_probs=199.0
Q ss_pred ceeceeccccccccc--ccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccccc----ccchhh--hHHHHHHHh
Q 004727 2 RLLKVATCNLNNWAL--DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----LDTVTH--AWECLKDLL 73 (733)
Q Consensus 2 ~~~kVA~~Qln~~~~--D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~----~~~~~~--~~~~L~~La 73 (733)
|+||||++|+++..+ |.+.|+++|.+++++|+++|||||||||++++||...+.... ..+.+. ..+.++.|+
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF 81 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence 579999999998866 889999999999999999999999999999999965332211 111111 011233344
Q ss_pred ccCCCCceeeecCcceee-Cc---eeeeeEEEEe-cceEEEEecceeeccCCCce--------eeecccccc-ccccccc
Q 004727 74 LGDWTDGILCSFGMPVIK-GS---ERYNCQVLCL-NRKIIMIRPKLWLANDGNYR--------ELRWFTAWK-QKDQLED 139 (733)
Q Consensus 74 ~~~~~~~i~iivG~p~~~-~g---~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~--------E~r~F~~g~-~~~~~e~ 139 (733)
+.++++++++++|+++.. ++ ++||++++|. +|+|+++|+|+||+++++|. |.+||++|+ ..
T Consensus 82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~----- 156 (302)
T cd07569 82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGF----- 156 (302)
T ss_pred HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCC-----
Confidence 444458999999999763 44 7999999995 89999999999999988764 666677765 21
Q ss_pred cCCchHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhh------h--hhhHH
Q 004727 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL------R--KLDYR 211 (733)
Q Consensus 140 ~~lp~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~------g--k~~~r 211 (733)
.+|+++++|||+.||+|+|||+. .+.++++|||||++++++++.. . +...|
T Consensus 157 --------------------~v~~~~~~rig~~IC~D~~fpe~-~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T cd07569 157 --------------------PVFRVPGGIMGMCICNDRRWPET-WRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHN 215 (302)
T ss_pred --------------------ceEecCCceEEEEEeeccccchH-HHHHHHCCCcEEEeecCCcccCCCccccchhhHHHH
Confidence 57999999999999999999974 7899999999999876553211 1 11234
Q ss_pred HHHHhhhccccceEEEeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 212 IRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 212 ~~li~~~A~~~g~~~vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
...+++||.+|+++++++|++|.+ +...|.|.|+|+ |+|+++++++.+.+ ++++++||++.++..|.
T Consensus 216 ~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vla~~~~~~e---~~~~a~id~~~~~~~r~ 283 (302)
T cd07569 216 LLSMQAGAYQNGTWVVAAAKAGME-DGCDLIGGSCIVAPTGEIVAQATTLED---EVIVADCDLDLCREGRE 283 (302)
T ss_pred HHHHhhhhhcccceEEEeeccccC-CCceEecceEEECCCCCEEEecCCCCC---cEEEEEecHHHhhhccc
Confidence 445678999999999999999988 456788999999 99999999998753 68999999999987775
No 23
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.5e-39 Score=343.06 Aligned_cols=244 Identities=24% Similarity=0.208 Sum_probs=203.7
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccch-----hhhHHHHHHHhccCCCC
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLGDWTD 79 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~-----~~~~~~L~~La~~~~~~ 79 (733)
|||++|+++..+|++.|++++.+++++|+++|+|||||||++++||.+.|......+. ....+.+.++++ ++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~ 77 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAEEVPDGASTRAWAELAA---EL 77 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhccCCCCchHHHHHHHHH---Hc
Confidence 7999999999999999999999999999999999999999999999877642111111 123455666665 47
Q ss_pred ceeeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccccc
Q 004727 80 GILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (733)
Q Consensus 80 ~i~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~ 159 (733)
++++++|+++..++++||++++++++++++.|+|+||+. .|.+||++|+.. .
T Consensus 78 ~~~i~~G~~~~~~~~~yNs~~vi~~~g~~~~y~K~~l~~----~e~~~f~~G~~~------------------------~ 129 (268)
T cd07580 78 GLYIVAGFAERDGDRLYNSAVLVGPDGVIGTYRKAHLWN----EEKLLFEPGDLG------------------------L 129 (268)
T ss_pred CcEEEeecccccCCceEEEEEEECCCCcEEEEEEecCCc----hhcceecCCCCC------------------------C
Confidence 999999999888889999999999555789999999985 488999999752 1
Q ss_pred ceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhh----hHHHHHHhhhccccceEEEeecCCCCC
Q 004727 160 GFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL----DYRIRAFISATHSRGGVYMYSNHQGCD 235 (733)
Q Consensus 160 ~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~----~~r~~li~~~A~~~g~~~vyaN~~G~~ 235 (733)
.+|+++++|||+.||+|+|||+ ..+.++++|||||++|++|++..++. ..|..+.+++|.+|++++++||++|.+
T Consensus 130 ~v~~~~~~~ig~~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~ 208 (268)
T cd07580 130 PVFDTPFGRIGVAICYDGWFPE-TFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE 208 (268)
T ss_pred ceEEcCCCcEEEEEECcccchH-HHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec
Confidence 5788999999999999999997 45789999999999999998765431 244557789999999999999999988
Q ss_pred CceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 236 GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 236 ~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
+...|.|+|+|+ |+|+++++++.+.+ ++++++++|++.++..|..
T Consensus 209 -~~~~~~G~S~ii~p~G~~~~~~~~~~~--~~~~~~~id~~~~~~~r~~ 254 (268)
T cd07580 209 -RGQPFIGQSLIVGPDGWPLAGPASGDE--EEILLADIDLTAARRKRIW 254 (268)
T ss_pred -cCceEeeeeEEECCCCCeeeecCCCCC--CeEEEEEecHHHHHHhhcC
Confidence 457899999999 99999999876533 4799999999999888753
No 24
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.8e-39 Score=345.08 Aligned_cols=248 Identities=22% Similarity=0.258 Sum_probs=207.7
Q ss_pred eceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccc------cchhhhHHHHHHHhccCC
Q 004727 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL------DTVTHAWECLKDLLLGDW 77 (733)
Q Consensus 4 ~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~------~~~~~~~~~L~~La~~~~ 77 (733)
||||++|+++. +|+++|++++.+.+++|+++||||+||||++++||.+.+..... +......+.+.++++
T Consensus 1 ~~ia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~--- 76 (284)
T cd07573 1 VTVALVQMACS-EDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAK--- 76 (284)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHH---
Confidence 68999999986 99999999999999999999999999999999999987642110 111223345566665
Q ss_pred CCceeeecCcceee-CceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccc
Q 004727 78 TDGILCSFGMPVIK-GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSV 155 (733)
Q Consensus 78 ~~~i~iivG~p~~~-~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~v 155 (733)
++++++++|++++. ++++||+++++. +|++++.|+|+|||..+.+.|.+||++|+..
T Consensus 77 ~~~i~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~--------------------- 135 (284)
T cd07573 77 ELGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTG--------------------- 135 (284)
T ss_pred HCCEEEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCC---------------------
Confidence 57999999998775 468999999997 8999999999999987778899999999721
Q ss_pred ccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhh-------hhhhHHHHHHhhhccccceEEEe
Q 004727 156 PFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-------RKLDYRIRAFISATHSRGGVYMY 228 (733)
Q Consensus 156 pfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~-------gk~~~r~~li~~~A~~~g~~~vy 228 (733)
..+|+++++|+|+.||+|+|||+ ..+.++++|||||++|+++++.. .+...|..+.+.+|.+|++++++
T Consensus 136 ---~~~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~ 211 (284)
T cd07573 136 ---FKVFDTRYGRIGVLICWDQWFPE-AARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAA 211 (284)
T ss_pred ---CceEecCCceEEEEEeccccchH-HHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEE
Confidence 14788999999999999999997 47789999999999999986532 23346677889999999999999
Q ss_pred ecCCCCCC---ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 229 SNHQGCDG---GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 229 aN~~G~~~---~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
||++|.++ .+..|+|+|+|+ |+|+++++++.+++ ++++++||++.++..|..
T Consensus 212 an~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~~~---~v~~a~id~~~~~~~r~~ 267 (284)
T cd07573 212 VNRVGVEGDPGSGITFYGSSFIADPFGEILAQASRDEE---EILVAEFDLDEIEEVRRA 267 (284)
T ss_pred eccccccCCCCCCceeeceeEEECCCCCeeeccCCCCC---cEEEEEecHHHHHHHHhh
Confidence 99999874 268899999999 99999999998753 789999999999887754
No 25
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=1.4e-39 Score=348.48 Aligned_cols=249 Identities=19% Similarity=0.256 Sum_probs=205.7
Q ss_pred ceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccc----ccccccchh--hhHHHHHHHhcc
Q 004727 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED----HFLELDTVT--HAWECLKDLLLG 75 (733)
Q Consensus 2 ~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D----~~~~~~~~~--~~~~~L~~La~~ 75 (733)
+.||||++|++. .+|+++|++++.+++++|++.|||||||||++++||.+.+ .+....... ...+.+.++++
T Consensus 5 ~~~~va~~Q~~~-~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~- 82 (296)
T PLN02747 5 RKVVVAALQFAC-SDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAK- 82 (296)
T ss_pred cceEEEEEEecC-CCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHH-
Confidence 579999999997 4899999999999999999999999999999999998752 221111111 23344555555
Q ss_pred CCCCceeeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcc
Q 004727 76 DWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKS 154 (733)
Q Consensus 76 ~~~~~i~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~ 154 (733)
++++.+++|++.+.++++||++++|. +|+|++.|+|+|||....+.|..||++|+..
T Consensus 83 --~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~-------------------- 140 (296)
T PLN02747 83 --ELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTG-------------------- 140 (296)
T ss_pred --HcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCC--------------------
Confidence 47899999999888899999999997 8999999999999876667899999998632
Q ss_pred cccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhh-----hhhhhHHHHHHhhhccccceEEEee
Q 004727 155 VPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQ-----LRKLDYRIRAFISATHSRGGVYMYS 229 (733)
Q Consensus 155 vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~-----~gk~~~r~~li~~~A~~~g~~~vya 229 (733)
..+|+++++|||+.||+|+|||+ ..+.++.+|||||++|++++.. .++...|..+++++|.+|+++++++
T Consensus 141 ----~~~~~~~~~rig~~IC~D~~fpe-~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 215 (296)
T PLN02747 141 ----FKVFDTKFAKIGVAICWDQWFPE-AARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVAS 215 (296)
T ss_pred ----CeeEEcCCccEEEEEEccccchH-HHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEE
Confidence 04789999999999999999997 4778999999999999997432 1234566678899999999999999
Q ss_pred cCCCCC------C-ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 230 NHQGCD------G-GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 230 N~~G~~------~-~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
|++|.+ + .+..|.|.|+|+ |+|+++++++.+. +++++++||++.++..|.
T Consensus 216 N~~G~~~~~~~~g~~~~~~~G~S~i~~p~G~vl~~~~~~~---e~~~~adid~~~~~~~r~ 273 (296)
T PLN02747 216 NRIGTEILETEHGPSKITFYGGSFIAGPTGEIVAEADDKA---EAVLVAEFDLDQIKSKRA 273 (296)
T ss_pred ecccccccccccCCcCceEeeeeEEECCCCCEeecCCCCC---CcEEEEEEcHHHHHHHHH
Confidence 999963 1 256799999999 9999999998764 379999999999987764
No 26
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.7e-39 Score=339.53 Aligned_cols=240 Identities=24% Similarity=0.269 Sum_probs=204.9
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccccc-ccchhhhHHHHHHHhccCCCCceee
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-LDTVTHAWECLKDLLLGDWTDGILC 83 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~-~~~~~~~~~~L~~La~~~~~~~i~i 83 (733)
|||++|+++.++|+++|+++|.+++++|+++|+|||||||++++||.+.+.... ........+.++++++ ++++.+
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~~~i 77 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAK---KHGVNI 77 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHH---HcCcEE
Confidence 799999999999999999999999999999999999999999999988765432 2233345556666665 479999
Q ss_pred ecCcc-eeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccce
Q 004727 84 SFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGF 161 (733)
Q Consensus 84 ivG~p-~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~v 161 (733)
++|++ +..++++||++++|. +|++++.|+|+||+++ +.|.+||++|+.. .+
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~~-------------------------~v 130 (253)
T cd07583 78 VAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDEL-------------------------EV 130 (253)
T ss_pred EeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCCc-------------------------eE
Confidence 99965 556789999999998 7999999999999976 4688999999753 57
Q ss_pred eeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceeee
Q 004727 162 IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYF 241 (733)
Q Consensus 162 f~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~f 241 (733)
|+++++|||+.||+|+|||+ ..+.++++|||+|++||+|+... ...|..+++.+|.+|+++++++|++|.+ ++..|
T Consensus 131 ~~~~~~rig~~IC~D~~~pe-~~r~~~~~ga~ll~~ps~~~~~~--~~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~ 206 (253)
T cd07583 131 FELDGGKVGLFICYDLRFPE-LFRKLALEGAEILFVPAEWPAAR--IEHWRTLLRARAIENQAFVVACNRVGTD-GGNEF 206 (253)
T ss_pred EEeCCeEEEEEEEeccccHH-HHHHHHHcCCcEEEECCCCCCCc--hHHHHHHHHHHHHHhCCEEEEEcCcccC-CCcee
Confidence 89999999999999999997 57789999999999999987532 3455567889999999999999999988 45678
Q ss_pred cceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 242 DGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 242 dG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
.|.|+|+ |+|+++++++. . ++++++++|++.++..|.
T Consensus 207 ~G~S~ii~p~G~il~~~~~-~---~~~~~~~i~l~~~~~~r~ 244 (253)
T cd07583 207 GGHSMVIDPWGEVLAEAGE-E---EEILTAEIDLEEVAEVRK 244 (253)
T ss_pred cceeEEECCCchhheecCC-C---ceEEEEEecHHHHHHHHH
Confidence 9999999 99999999886 2 479999999999987764
No 27
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=4.1e-39 Score=356.31 Aligned_cols=250 Identities=17% Similarity=0.147 Sum_probs=204.3
Q ss_pred ceeceeccccccc-------ccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccc---cccc--ccchhhhHHHH
Q 004727 2 RLLKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED---HFLE--LDTVTHAWECL 69 (733)
Q Consensus 2 ~~~kVA~~Qln~~-------~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D---~~~~--~~~~~~~~~~L 69 (733)
+.||||++|+++. ..|++.|++++.++|++|+++|||||||||++++||.... .+.+ ........+.+
T Consensus 85 ~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l 164 (405)
T PLN00202 85 RVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFL 164 (405)
T ss_pred CeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHH
Confidence 4699999999964 2589999999999999999999999999999999996311 1111 01111234455
Q ss_pred HHHhccCCCCceeeecCcceee---CceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchH
Q 004727 70 KDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNE 145 (733)
Q Consensus 70 ~~La~~~~~~~i~iivG~p~~~---~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~ 145 (733)
+++|+ +++|+|++|+.++. ++++||++++|. +|+|++.|+|+||+++|.|.|+.||.+|+..
T Consensus 165 ~~lA~---~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g----------- 230 (405)
T PLN00202 165 QELAR---KYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTG----------- 230 (405)
T ss_pred HHHHH---HCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCC-----------
Confidence 66655 58999999987753 357999999997 7999999999999999999999999999742
Q ss_pred HHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceE
Q 004727 146 ISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (733)
Q Consensus 146 i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~ 225 (733)
..+|+++++|||+.||||+|||+ ..+.++++|||||++||+|+...++ ..|..++++||.+|+++
T Consensus 231 -------------~~vf~t~~gkiGv~ICYD~~FPE-~~r~la~~GAdiIl~Psa~~~~~~~-~~w~~~~raRAiEN~~f 295 (405)
T PLN00202 231 -------------HPVFETAFGKIAVNICYGRHHPL-NWLAFGLNGAEIVFNPSATVGDLSE-PMWPIEARNAAIANSYF 295 (405)
T ss_pred -------------ceEEEeCCCeEEEEEccccccHH-HHHHHHHCCCcEEEECCCCCCccCH-HHHHHHHHHHHHhcCCE
Confidence 15789999999999999999997 4678999999999999999765443 35667889999999999
Q ss_pred EEeecCCCCCC---------------ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 226 YMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 226 ~vyaN~~G~~~---------------~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
++++|++|.+. +...|.|+|+|+ |+|+++++++.+. +++++++||++.++..|.+
T Consensus 296 vv~aNrvG~~~~~~~~~~~~g~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~---E~llvadIDl~~v~~~R~~ 366 (405)
T PLN00202 296 VGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRYK---DGLLISDMDLNLCRQLKDK 366 (405)
T ss_pred EEEeccccccccccccccccccccccccccccceeEEEcCCCCEeccCCCCC---CcEEEEEeCHHHHHHHHHh
Confidence 99999999752 114689999999 9999999987553 3799999999999887754
No 28
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8.6e-39 Score=335.74 Aligned_cols=242 Identities=23% Similarity=0.256 Sum_probs=205.6
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccc--cchhhhHHHHHHHhccCCCCcee
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL--DTVTHAWECLKDLLLGDWTDGIL 82 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~--~~~~~~~~~L~~La~~~~~~~i~ 82 (733)
|||++|++...+|++.|++++.+++++|+++||||+||||++++||.+.+.+... .......+.++++++ +++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~~~ 77 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLAR---RYGLT 77 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHH---HcCcE
Confidence 7999999998899999999999999999999999999999999999987765432 112234555666665 47999
Q ss_pred eecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccccccee
Q 004727 83 CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (733)
Q Consensus 83 iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~vf 162 (733)
+++|++++.++++||++++|.+++.++.|+|+||++ .|.+||++|+.. .+|
T Consensus 78 i~~G~~~~~~~~~yNs~~vi~~~g~i~~y~K~~l~~----~E~~~~~~G~~~-------------------------~v~ 128 (261)
T cd07585 78 ILAGLIEKAGDRPYNTYLVCLPDGLVHRYRKLHLFR----REHPYIAAGDEY-------------------------PVF 128 (261)
T ss_pred EEEeccccCCCceeEEEEEECCCCcEeEEeeecCCc----cccceEcCCCCC-------------------------ceE
Confidence 999999888889999999998544478999999986 388999998753 578
Q ss_pred eeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhh--hhhHHHHHHhhhccccceEEEeecCCCCCCceee
Q 004727 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (733)
Q Consensus 163 ~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~g--k~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~ 240 (733)
+++++|||+.||+|+|+|+ ..+.++++|||||++|++|+...+ ....|..+++.+|.+++++++++|.+|.+ ++..
T Consensus 129 ~~~~~rig~~IC~D~~~pe-~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~-~~~~ 206 (261)
T cd07585 129 ATPGVRFGILICYDNHFPE-NVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD-GGEV 206 (261)
T ss_pred EcCCceEEEEEEcCCcCcH-HHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC-CCce
Confidence 9999999999999999997 477899999999999999875432 23345567889999999999999999988 5778
Q ss_pred ecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 241 fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
|.|.|+|+ |+|+++++++.+.+ ++++++||++.++..|.+
T Consensus 207 ~~G~S~i~~p~G~v~~~~~~~~e---~~l~~~id~~~~~~~r~~ 247 (261)
T cd07585 207 FPGGAMILDPYGRVLAETTSGGD---GMVVADLDLDLINTVRGR 247 (261)
T ss_pred ecceEEEECCCCCEEeccCCCCC---cEEEEEecHHHHHHhhcc
Confidence 99999999 99999999988753 789999999999988753
No 29
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-38 Score=334.28 Aligned_cols=240 Identities=24% Similarity=0.230 Sum_probs=203.4
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccc-----cccchhhhHHHHHHHhccCCCC
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL-----ELDTVTHAWECLKDLLLGDWTD 79 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~-----~~~~~~~~~~~L~~La~~~~~~ 79 (733)
|||++|+++..+|+++|++++++++++|+++|+|||||||+++|||.+.+... .........+.++++++. +
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~---~ 77 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKE---L 77 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHH---c
Confidence 79999999999999999999999999999999999999999999998765432 111222345566777764 7
Q ss_pred ceeeecCcceeeC--ceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccc
Q 004727 80 GILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (733)
Q Consensus 80 ~i~iivG~p~~~~--g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vp 156 (733)
++++++|+++..+ +++||++++|. +|++++.|+|+||+. .|.+||++|+..
T Consensus 78 ~i~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~~---------------------- 131 (258)
T cd07584 78 GVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQY---------------------- 131 (258)
T ss_pred CeEEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCCC----------------------
Confidence 9999999988653 68999999998 899999999999974 388899999753
Q ss_pred cccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCC
Q 004727 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (733)
Q Consensus 157 fG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~ 236 (733)
.+|+++++|+|+.||+|+|||+ ..+.++++|||+|++|++|+.. ....|..+.+.||.+|+++++++|++|.+
T Consensus 132 ---~~~~~~~~~~g~~IC~D~~fpe-~~r~~~~~gadll~~ps~~~~~--~~~~~~~~~~~rA~En~~~vv~~n~~g~~- 204 (258)
T cd07584 132 ---PVFDTPFGKIGVMICYDMGFPE-VARILTLKGAEVIFCPSAWREQ--DADIWDINLPARALENTVFVAAVNRVGNE- 204 (258)
T ss_pred ---eeEEcCCceEEEEEEcCccChH-HHHHHHHCCCcEEEECCccCCC--CchHHHHHHHHHHHhCCcEEEEECccccC-
Confidence 4688899999999999999997 5788999999999999998753 23455567889999999999999999988
Q ss_pred ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 237 ~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
+...|.|.|+|+ |+|+++++++.+++ ++++++||++.++..|.+
T Consensus 205 ~~~~~~G~S~ii~p~G~il~~~~~~~~---~~~~~~id~~~~~~~r~~ 249 (258)
T cd07584 205 GDLVLFGKSKILNPRGQVLAEASEEAE---EILYAEIDLDAIADYRMT 249 (258)
T ss_pred CCceecceeEEECCCCceeeecCCCCC---cEEEEEeCHHHHHHHHhh
Confidence 556789999999 99999999988753 799999999999877753
No 30
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-38 Score=332.42 Aligned_cols=241 Identities=21% Similarity=0.140 Sum_probs=203.8
Q ss_pred eecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccc---cccchhhhHHHHHHHhccCCCCcee
Q 004727 6 VATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL---ELDTVTHAWECLKDLLLGDWTDGIL 82 (733)
Q Consensus 6 VA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~---~~~~~~~~~~~L~~La~~~~~~~i~ 82 (733)
||++|+++. +|+++|++++.++|++|+++|+|||||||++++||...+... .........+.+.++++ +++++
T Consensus 1 ia~~Q~~~~-~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~i~ 76 (255)
T cd07581 1 VALAQFASS-GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLAR---ELGIT 76 (255)
T ss_pred CEEEEeeCC-CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHH---HcCeE
Confidence 689999986 999999999999999999999999999999999998876421 11222234445556665 58999
Q ss_pred eecCcceeeC-ceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccc
Q 004727 83 CSFGMPVIKG-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (733)
Q Consensus 83 iivG~p~~~~-g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~ 160 (733)
+++|++++.+ +++||++++|. +|+|++.|+|+||++...|.|.+||++|+... ..
T Consensus 77 iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~-----------------------~~ 133 (255)
T cd07581 77 VVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELP-----------------------PV 133 (255)
T ss_pred EEEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCC-----------------------ce
Confidence 9999998865 48999999995 89999999999998876788999999997520 03
Q ss_pred eeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceee
Q 004727 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (733)
Q Consensus 161 vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~ 240 (733)
+++++++|+|+.||+|+|+|+ ..+.++++|||||++|++|+...+..++|..+++.+|.+++++++++|++|. .
T Consensus 134 ~~~~~~~kig~~IC~D~~~pe-~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~ 207 (255)
T cd07581 134 VFVVGGVKVGLATCYDLRFPE-LARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----R 207 (255)
T ss_pred EEecCCceEEEEEEecccCHH-HHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----C
Confidence 577788999999999999997 5778999999999999998765555667778899999999999999999986 5
Q ss_pred ecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 241 fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
|.|.|+|+ |+|+++++.+.+ ++++++++|+++++..|.+
T Consensus 208 ~~G~S~i~~p~G~i~~~~~~~----~~~l~~~id~~~~~~~r~~ 247 (255)
T cd07581 208 GIGRSMVVDPLGVVLADLGER----EGLLVADIDPERVEEAREA 247 (255)
T ss_pred cccceEEECCCcceeeecCCC----CcEEEEEeCHHHHHHHHHh
Confidence 89999999 999999998753 3799999999999888754
No 31
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.5e-38 Score=335.84 Aligned_cols=237 Identities=18% Similarity=0.129 Sum_probs=191.1
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
|||++|+++.. |+++|++++.++|++|+++|||||||||++++||.+.+... ........+.|+++++ +++++++
T Consensus 1 ria~~Q~~~~~-d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~~~~-~~~~~~~~~~l~~lA~---~~~i~iv 75 (279)
T cd07579 1 RIAVAQFAPTP-DIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPASEA-ESDTGPAVSALRRLAR---RLRLYLV 75 (279)
T ss_pred CEEEEeccCcc-CHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChHHhc-ccCCCHHHHHHHHHHH---HcCeEEE
Confidence 79999999875 99999999999999999999999999999999997654321 1222234455666666 4799999
Q ss_pred cCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccceeee
Q 004727 85 FGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQF 164 (733)
Q Consensus 85 vG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~vf~~ 164 (733)
+|++++.++++||+++++.++++++.|+|+||++ .|.+||++|+.. .+|++
T Consensus 76 ~G~~~~~~~~~yNs~~vi~~~G~i~~Y~K~hL~~----~E~~~f~~G~~~-------------------------~v~~~ 126 (279)
T cd07579 76 AGFAEADGDGLYNSAVLVGPEGLVGTYRKTHLIE----PERSWATPGDTW-------------------------PVYDL 126 (279)
T ss_pred EeceEccCCcEEEEEEEEeCCeeEEEEecccCCC----cchhhccCCCCC-------------------------eeEEc
Confidence 9999888889999999999544789999999975 488999999753 57889
Q ss_pred ehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchh-----------------hhhhhhHHHHHHhhhccccceEEE
Q 004727 165 LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH-----------------QLRKLDYRIRAFISATHSRGGVYM 227 (733)
Q Consensus 165 ~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~-----------------~~gk~~~r~~li~~~A~~~g~~~v 227 (733)
+++|||+.||||+|||+ ..+.++++|||||++|++++. ..++..++|.++++||.||+++++
T Consensus 127 ~~~kiG~~ICyD~~fPe-~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv 205 (279)
T cd07579 127 PLGRVGLLIGHDALFPE-AGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFA 205 (279)
T ss_pred CceeEEEEEeccccCcH-HHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEE
Confidence 99999999999999997 578999999999999999753 112211345588999999999999
Q ss_pred eecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcc
Q 004727 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAG 279 (733)
Q Consensus 228 yaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~ 279 (733)
+||++|.+ ..|.|.|+|+ |+|.++........+++++++++||++.++.
T Consensus 206 ~aN~~g~~---~~~~G~S~ii~P~G~v~~~~~~~~~~~e~~l~a~id~~~~~~ 255 (279)
T cd07579 206 FANVPDPA---RGYTGWSGVFGPDTFAFPRQEAAIGDEEGIAWALIDTSNLDS 255 (279)
T ss_pred EeeccCCc---cccccccEEECCCeEEcchhhcccCCCCcEEEEEecchhhcc
Confidence 99999865 2478999999 9999984321011113479999999998875
No 32
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.3e-38 Score=334.18 Aligned_cols=238 Identities=20% Similarity=0.201 Sum_probs=195.5
Q ss_pred eceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchh----hhHHHHHHHhccCCCC
Q 004727 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT----HAWECLKDLLLGDWTD 79 (733)
Q Consensus 4 ~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~----~~~~~L~~La~~~~~~ 79 (733)
+|||++|+++.++|++.|++++++++++|+++|||||||||+++|||.+.|......+.. ...+.++++++ ++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~ 77 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAR---EH 77 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHH---Hc
Confidence 589999999999999999999999999999999999999999999998766532222222 22345555555 58
Q ss_pred ceeeecCcceee--CceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccc
Q 004727 80 GILCSFGMPVIK--GSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (733)
Q Consensus 80 ~i~iivG~p~~~--~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpf 157 (733)
++.+++|+++.. ++++||++++|.++++++.|+|+|+. +.|.+||++|+..
T Consensus 78 ~i~ii~G~~~~~~~~~~~yNs~~vi~~~g~~~~y~K~h~~----~~e~~~~~~g~~~----------------------- 130 (258)
T cd07578 78 DCYIVVGLPEVDSRSGIYYNSAVLIGPSGVIGRHRKTHPY----ISEPKWAADGDLG----------------------- 130 (258)
T ss_pred CcEEEEecceecCCCCCeeEEEEEECCCCcEEeEeeecCC----cccccccCCCCCC-----------------------
Confidence 999999999874 46799999999965589999999974 3588999998632
Q ss_pred ccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCc
Q 004727 158 GYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGG 237 (733)
Q Consensus 158 G~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~ 237 (733)
..+|+++++|||+.||+|+|||+ ..+.++++||++|++||+|+....+.. ....||.+|+++++++|++|.+ +
T Consensus 131 -~~v~~~~~~rig~~IC~D~~fpe-~~r~~~~~ga~ll~~ps~~~~~~~~~~----~~~~rA~en~~~vv~an~~G~~-~ 203 (258)
T cd07578 131 -HQVFDTEIGRIALLICMDIHFFE-TARLLALGGADVICHISNWLAERTPAP----YWINRAFENGCYLIESNRWGLE-R 203 (258)
T ss_pred -ceEEECCCccEEEEEeeCCCchH-HHHHHHHcCCCEEEEcCCCCCCCCcch----HHHHhhhcCCeEEEEecceecc-C
Confidence 15789999999999999999997 577889999999999999864322221 2357999999999999999988 5
Q ss_pred eeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 238 RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 238 ~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
+..|.|.|+|+ |+|+++++.+.. +++++++||++.++..|.
T Consensus 204 ~~~~~G~S~ii~p~G~il~~~~~~----e~~~~a~id~~~~~~~r~ 245 (258)
T cd07578 204 GVQFSGGSCIIEPDGTIQASIDSG----DGVALGEIDLDRARHRQF 245 (258)
T ss_pred CcceeeEEEEECCCCcEeeccCCC----CceEEEEecchHhhhhhc
Confidence 57899999999 999999987632 378999999999987764
No 33
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=2e-38 Score=339.76 Aligned_cols=247 Identities=19% Similarity=0.157 Sum_probs=200.7
Q ss_pred eceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccc-----cch---hhh----HHHHHH
Q 004727 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL-----DTV---THA----WECLKD 71 (733)
Q Consensus 4 ~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~-----~~~---~~~----~~~L~~ 71 (733)
||||++|+++..+|++.|++++.+++++|+++|++||||||+++|||...+++..+ .+. +.+ ...++.
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELER 80 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHH
Confidence 68999999998899999999999999999999999999999999999876654211 110 000 123444
Q ss_pred HhccCCCCceeeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHh
Q 004727 72 LLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (733)
Q Consensus 72 La~~~~~~~i~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~ 150 (733)
|.+.++++++++++|++++.++++||++++|. +|++++.|+|+|+. +.|.+||.+|+...
T Consensus 81 l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~----~~E~~~~~~g~~~~--------------- 141 (297)
T cd07564 81 LAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPT----HAERLVWGQGDGSG--------------- 141 (297)
T ss_pred HHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCC----chhhhhcccCCCCC---------------
Confidence 54444468999999998887889999999998 89999999999975 36899999886320
Q ss_pred cCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCc--hhhhhhhhHHHHHHhhhccccceEEEe
Q 004727 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGS--HHQLRKLDYRIRAFISATHSRGGVYMY 228 (733)
Q Consensus 151 ~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas--~~~~gk~~~r~~li~~~A~~~g~~~vy 228 (733)
..+|+++++|||+.||+|+|||+ ..+.++++|||||++++++ +...++ .+|..++++||.+|++++|+
T Consensus 142 --------~~v~~~~~~kig~~ICyD~~fPe-~~r~~a~~ga~ii~~~~~~~~~~~~~~-~~~~~~~~arAien~~~vv~ 211 (297)
T cd07564 142 --------LRVVDTPIGRLGALICWENYMPL-ARYALYAQGEQIHVAPWPDFSPYYLSR-EAWLAASRHYALEGRCFVLS 211 (297)
T ss_pred --------ceEEecCCceEEEEEEhhcCCHH-HHHHHHHCCCeEEEECCCCcccccccH-HHHHHHHHHHHHhcCCEEEE
Confidence 15799999999999999999996 5678999999999997764 222232 46667889999999999999
Q ss_pred ecCCCCC--------------CceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 229 SNHQGCD--------------GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 229 aN~~G~~--------------~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
||++|.+ .+...|.|.|+|+ |+|+++++++.+. ++++++++|++.++..|.
T Consensus 212 ~N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il~~~~~~~---e~~l~a~id~~~~~~~r~ 277 (297)
T cd07564 212 ACQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVLAGPLPDE---EGILYADIDLDDIVEAKL 277 (297)
T ss_pred cccccChhHcccccccccccccccccCCCceEEECCCCCeecCCCCCC---ceEEEEEecHHHHHHHHh
Confidence 9999953 1335689999999 9999999988654 479999999999887764
No 34
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=3.9e-38 Score=336.30 Aligned_cols=241 Identities=17% Similarity=0.143 Sum_probs=194.2
Q ss_pred eceecccccc----cccccccchhhHHHHHHHHHH--cCceeeeCcceeecccccccc-ccc--ccchhhhHHHHHHHhc
Q 004727 4 LKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCEDH-FLE--LDTVTHAWECLKDLLL 74 (733)
Q Consensus 4 ~kVA~~Qln~----~~~D~e~N~~ri~~~I~~A~~--~gadLvVfPEl~ltGY~~~D~-~~~--~~~~~~~~~~L~~La~ 74 (733)
++||++|+++ ..+|++.|++++.++|++|++ +|||||||||+++|||..... ..+ .+......+.|+++++
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~~~~~a~~~~~~~~~~l~~lA~ 80 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTMDETACTVPGPETDIFAEACK 80 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcchhhhhccCCCChhHHHHHHHHH
Confidence 5799999998 578999999999999999987 599999999999999975311 111 1111123344555554
Q ss_pred cCCCCceeeecCcceeeC---ceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHh
Q 004727 75 GDWTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (733)
Q Consensus 75 ~~~~~~i~iivG~p~~~~---g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~ 150 (733)
+++|++++|++++.+ +++||++++|. +|+|++.|+|+||+. +..+|.+|+..
T Consensus 81 ---~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~---------------- 136 (291)
T cd07565 81 ---EAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLG---------------- 136 (291)
T ss_pred ---HCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCC----------------
Confidence 588999999887753 68999999998 799999999999842 23457787641
Q ss_pred cCcccccccceeeee-hhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEee
Q 004727 151 KQKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYS 229 (733)
Q Consensus 151 ~~~~vpfG~~vf~~~-~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vya 229 (733)
..+|++. |+|||+.||+|+|||+ ..+.++++|||||++|++|+... .++|..+.+.||.+|++++++|
T Consensus 137 --------~~v~~~~~g~riG~~ICyD~~fPe-~~r~la~~GAdill~ps~~~~~~--~~~w~~~~~aRA~En~~~vv~a 205 (291)
T cd07565 137 --------TPVCEGPKGSKIALIICHDGMYPE-IARECAYKGAELIIRIQGYMYPA--KDQWIITNKANAWCNLMYTASV 205 (291)
T ss_pred --------ceeeECCCCCEEEEEEEcCCCCcH-HHHHHHHCCCeEEEECCcCCCCc--chHHHHHHHHHHHhcCcEEEEe
Confidence 1467764 6799999999999997 57889999999999999987643 3467778899999999999999
Q ss_pred cCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 230 NHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 230 N~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
|++|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.++..|..
T Consensus 206 N~~G~~-~~~~~~G~S~ivdP~G~ila~~~~~~---e~i~~adid~~~~~~~R~~ 256 (291)
T cd07565 206 NLAGFD-GVFSYFGESMIVNFDGRTLGEGGREP---DEIVTAELSPSLVRDARKN 256 (291)
T ss_pred cccccC-CCceeeeeeEEECCCCCEEEeCCCCC---CcEEEEEEcHHHHHHHHhc
Confidence 999987 457789999999 9999999998764 3689999999999877754
No 35
>PLN02798 nitrilase
Probab=100.00 E-value=5e-38 Score=334.84 Aligned_cols=248 Identities=17% Similarity=0.162 Sum_probs=204.5
Q ss_pred ceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcce-eecccccccccccc-cchhhhHHHHHHHhccCCCC
Q 004727 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPEL-EITGYGCEDHFLEL-DTVTHAWECLKDLLLGDWTD 79 (733)
Q Consensus 2 ~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl-~ltGY~~~D~~~~~-~~~~~~~~~L~~La~~~~~~ 79 (733)
+.||||++|+++ .+|++.|++++++++++|+++|||||||||+ .++||.+.+.+... .+.....+.|+++++. +
T Consensus 9 ~~~ria~~Q~~~-~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~---~ 84 (286)
T PLN02798 9 SSVRVAVAQMTS-TNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARE---S 84 (286)
T ss_pred CccEEEEEEccC-CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHH---c
Confidence 469999999986 5999999999999999999999999999998 46899876654322 2223355667777764 7
Q ss_pred ceeeecC-ccee--eCceeeeeEEEEe-cceEEEEecceee-----ccCCCceeeeccccccccccccccCCchHHHHHh
Q 004727 80 GILCSFG-MPVI--KGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (733)
Q Consensus 80 ~i~iivG-~p~~--~~g~lYN~a~vi~-~G~Il~~~~K~~L-----p~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~ 150 (733)
++.+++| .+++ .++++||++++|. +|+|++.|+|+|| |..+.+.|.+||++|+..
T Consensus 85 ~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~---------------- 148 (286)
T PLN02798 85 GLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTI---------------- 148 (286)
T ss_pred CeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCee----------------
Confidence 9999988 4544 4578999999997 8999999999999 434456799999999753
Q ss_pred cCcccccccceeeeehhhHHHHHhhhhcCCCCCccccc-ccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEee
Q 004727 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLA-LNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYS 229 (733)
Q Consensus 151 ~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la-~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vya 229 (733)
.+|+++++|||+.||+|+|||+ ..+.++ ++|||||++|++++...+. ..|..+++.||.+|+++++.+
T Consensus 149 ---------~v~~~~~~k~g~~IC~D~~fpe-~~r~~a~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rAien~~~vv~a 217 (286)
T PLN02798 149 ---------VAVDSPVGRLGLTVCYDLRFPE-LYQQLRFEHGAQVLLVPSAFTKPTGE-AHWEVLLRARAIETQCYVIAA 217 (286)
T ss_pred ---------eEEecCCceEEEEEEEcccChH-HHHHHHHhCCCcEEEECCcCCCCCcH-HHHHHHHHHHHHHhCCEEEEe
Confidence 4788999999999999999997 467888 9999999999998765543 355667899999999999999
Q ss_pred cCCCCCCceeeecceeEEE-EcCeEeeeccc-ccccceEEEEEEeehhhhcccccc
Q 004727 230 NHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQ-FSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 230 N~~G~~~~~~~fdG~S~I~-p~G~vla~~~~-f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
|++|.++....|.|.|+|+ |+|+++++.+. ++ +++++++||++.++..|.+
T Consensus 218 n~~G~~~~~~~~~G~S~ii~p~G~il~~~~~~~~---e~~~~a~id~~~~~~~r~~ 270 (286)
T PLN02798 218 AQAGKHNEKRESYGHALIIDPWGTVVARLPDRLS---TGIAVADIDLSLLDSVRTK 270 (286)
T ss_pred cccCcCCCCceeeeeeEEECCCccchhhcCCCCC---CCEEEEEecHHHHHHHHHh
Confidence 9999775567789999999 99999999875 33 3799999999999876643
No 36
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=6.4e-38 Score=327.92 Aligned_cols=238 Identities=18% Similarity=0.204 Sum_probs=198.5
Q ss_pred eceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceee
Q 004727 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (733)
Q Consensus 4 ~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~i 83 (733)
||||++|+++.++|++.|++++++.|++|++ |||||||||++++||.+.+......+.....+.++++++. +++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~---~~i~i 76 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKK---KGAAI 76 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHH---CCeEE
Confidence 7999999999999999999999999999997 9999999999999998766544333334445556666664 68888
Q ss_pred ecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccccccee
Q 004727 84 SFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (733)
Q Consensus 84 ivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~vf 162 (733)
++|++++.++++||+++++. +|++ ..|+|+||+..+ .|..||++|+.. .+|
T Consensus 77 ~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~~-------------------------~~~ 128 (252)
T cd07575 77 TGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNER-------------------------VIV 128 (252)
T ss_pred EEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCCc-------------------------eEE
Confidence 88888888889999999998 6765 599999998643 588999999743 578
Q ss_pred eeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceeeec
Q 004727 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFD 242 (733)
Q Consensus 163 ~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~fd 242 (733)
+++++|||+.||+|+|+|+. .+.++. ||+|++|++|+... ...|..+.+++|.+|++++++||++|.++.+..|.
T Consensus 129 ~~~~~~ig~~IC~D~~~pe~-~r~~~~--a~lil~~s~~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~ 203 (252)
T cd07575 129 EYKGWKILLQVCYDLRFPVW-SRNTND--YDLLLYVANWPAPR--RAAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYS 203 (252)
T ss_pred EECCEEEEEEEEeccCChHH-HHhhcC--CCEEEEeCCCCCCc--hHHHHHHhHHHHhhccceEEEecccccCCCCceEc
Confidence 89999999999999999974 445544 99999999987543 23455577889999999999999999885567899
Q ss_pred ceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 243 GCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 243 G~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
|.|+|+ |+|+++++.+.+ ++++++++|++.++..|.
T Consensus 204 G~S~i~~p~G~~l~~~~~~----e~~i~~~id~~~~~~~r~ 240 (252)
T cd07575 204 GDSAVIDPLGEPLAEAEED----EGVLTATLDKEALQEFRE 240 (252)
T ss_pred ceeEEECCCCceeeEcCCC----ceEEEEEECHHHHHHHHh
Confidence 999999 999999998875 379999999999987664
No 37
>PLN02504 nitrilase
Probab=100.00 E-value=5.9e-38 Score=341.89 Aligned_cols=247 Identities=15% Similarity=0.120 Sum_probs=199.2
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccc----------ccc---chhhh--
Q 004727 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL----------ELD---TVTHA-- 65 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~----------~~~---~~~~~-- 65 (733)
|+.||||++|+++..+|.++|++++.++|++|+++|||||||||+++|||+..+.+. ..+ +...+
T Consensus 22 ~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (346)
T PLN02504 22 SSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAID 101 (346)
T ss_pred CCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhccc
Confidence 357999999999988999999999999999999999999999999999998643322 001 11111
Q ss_pred --HHHHHHHhccCCCCceeeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCC
Q 004727 66 --WECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQL 142 (733)
Q Consensus 66 --~~~L~~La~~~~~~~i~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~l 142 (733)
.+.++.|++.++++++++++|++++.++.+||++++|. +|++++.|+|+|+. +.|+++|.+|....
T Consensus 102 ~~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~----~~E~~~f~~G~g~~------- 170 (346)
T PLN02504 102 VPGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPT----ALERLIWGFGDGST------- 170 (346)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCC----cccceeeecCCCCC-------
Confidence 12345555555568999999999888889999999998 89999999999863 35899999886421
Q ss_pred chHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhcccc
Q 004727 143 PNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSR 222 (733)
Q Consensus 143 p~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~ 222 (733)
..+|+++++|||+.||+|+|||+ ..+.++++|||||++|++++ ...|..++++||.+|
T Consensus 171 ----------------~~vf~~~~griG~lICyD~~fPe-~~r~la~~Gadii~~p~~~~-----~~~w~~~~rarA~En 228 (346)
T PLN02504 171 ----------------IPVYDTPIGKIGAVICWENRMPL-LRTAMYAKGIEIYCAPTADS-----RETWQASMRHIALEG 228 (346)
T ss_pred ----------------CceEEcCCceEEEEEeccchhHH-HHHHHHHCCCeEEEECCCCC-----chhHHHHHHHHHHcc
Confidence 15789999999999999999997 46789999999999999874 245667889999999
Q ss_pred ceEEEeecCCCC---------------CC----ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 223 GGVYMYSNHQGC---------------DG----GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 223 g~~~vyaN~~G~---------------~~----~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
++++|++|++|. ++ +...|.|.|+|+ |+|++++++.... +++++++||++.++..|.
T Consensus 229 ~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~---e~il~adiDl~~i~~~R~ 305 (346)
T PLN02504 229 GCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEG---EGLITADLDLGEIARAKF 305 (346)
T ss_pred CcEEEEecccccccccCcccccccccccccccccccccCcceEEECCCCCEecCCCCCC---CcEEEEEEcHHHHHHHHh
Confidence 999999999961 11 235689999999 9999998875332 479999999999887664
Q ss_pred c
Q 004727 283 S 283 (733)
Q Consensus 283 ~ 283 (733)
.
T Consensus 306 ~ 306 (346)
T PLN02504 306 D 306 (346)
T ss_pred h
Confidence 3
No 38
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=7.7e-38 Score=333.94 Aligned_cols=237 Identities=16% Similarity=0.042 Sum_probs=192.2
Q ss_pred ceeccccccccccc-------ccchhhHHHHHHHHHHcCceeeeCcceeeccccccccccccc-----------------
Q 004727 5 KVATCNLNNWALDF-------DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD----------------- 60 (733)
Q Consensus 5 kVA~~Qln~~~~D~-------e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~----------------- 60 (733)
|+|++|..+.++|. ++|+++++++|++|+++|||||||||+++|||...+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (299)
T cd07567 2 IAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDP 81 (299)
T ss_pred EEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhcccccccccccccccc
Confidence 78999999998888 999999999999999999999999999999998776432110
Q ss_pred chhhhHHHHHHHhccCCCCceeeecCcceee-----------C-ceeeeeEEEEe-cceEEEEecceeeccCCCceeeec
Q 004727 61 TVTHAWECLKDLLLGDWTDGILCSFGMPVIK-----------G-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRW 127 (733)
Q Consensus 61 ~~~~~~~~L~~La~~~~~~~i~iivG~p~~~-----------~-g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~ 127 (733)
......+.++.|++.+++++++|++|++++. + +.+||++++|. +|+|++.|+|+||+ .|..|
T Consensus 82 ~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~~ 156 (299)
T cd07567 82 DRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPGF 156 (299)
T ss_pred cccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----ccccc
Confidence 0011123445555555568999999998763 2 26999999998 89999999999996 48889
Q ss_pred cccccccccccccCCchHHHHHhcCcccccccceeeeehh-hHHHHHhhhhcCCCCCccccccc-ceEEEecCCCchhhh
Q 004727 128 FTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDT-AVAAEICEELFTPIPPHADLALN-GVEVFMNASGSHHQL 205 (733)
Q Consensus 128 F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~vf~~~~~-riGv~ICeDlw~p~~~~~~la~~-GadiIlnpSas~~~~ 205 (733)
|++|... ..+|+++++ |||+.||+|+|||+ ..+.++++ |||+|++|++|+...
T Consensus 157 ~~~G~~~------------------------~~vf~t~~g~kiGvlICyD~~FPE-~~r~la~~~GAdlil~paaw~~~~ 211 (299)
T cd07567 157 DVPPEPE------------------------IVTFDTDFGVTFGIFTCFDILFKE-PALELVKKLGVDDIVFPTAWFSEL 211 (299)
T ss_pred cCCCCCC------------------------ceEEECCCCCEEEEEEEeeccchH-HHHHHHHhCCCCEEEECCccCCCC
Confidence 9998531 047888865 99999999999997 57789998 999999999987543
Q ss_pred hhhhHHHHHHhhhccccceEEEeecCCCCCCceeeecceeEEE-Ec-CeEeeecccccccceEEEEEEeehhhhc
Q 004727 206 RKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VN-GDMIAQGSQFSLKDVEIVVAQVDLDAVA 278 (733)
Q Consensus 206 gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~fdG~S~I~-p~-G~vla~~~~f~~~~~~vv~a~vDl~~~~ 278 (733)
+. ..|..++++||.+|+++++.||++|.. .|.|+|+|+ |+ |+++++++... ++++++++||++.+|
T Consensus 212 ~~-~~w~~l~~arA~eN~~~vi~~N~~g~~----~~~G~S~iv~P~~G~v~a~~~~~~--~e~~l~~~id~~~~~ 279 (299)
T cd07567 212 PF-LTAVQIQQAWAYANGVNLLAANYNNPS----AGMTGSGIYAGRSGALVYHYDNEP--GGKLLVAEVPKLPSR 279 (299)
T ss_pred Cc-hhHHHHHHHHHHHcCceEEEecCCCCc----CccccceEEcCCCCcEEEEecCCC--CceEEEEEccCCccc
Confidence 33 366778899999999999999999864 367999999 99 99999976542 247999999998775
No 39
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8.2e-38 Score=328.21 Aligned_cols=234 Identities=22% Similarity=0.257 Sum_probs=191.6
Q ss_pred ceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccch-----hhhHHHHHHHhccCCCC
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLGDWTD 79 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~-----~~~~~~L~~La~~~~~~ 79 (733)
|||++|+++..+|++.|++++.++|++|+ ||||||||++++||.+.+......+. ....+.++++++ ++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~ 74 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELAR---ET 74 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHH---Hh
Confidence 79999999999999999999999999884 99999999999999864321111111 122334555554 57
Q ss_pred ceeeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCccccccc
Q 004727 80 GILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (733)
Q Consensus 80 ~i~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~ 159 (733)
++++++|+++..++++||++++|.+++++++|+|+||++ .|.+||++|+.. .
T Consensus 75 ~i~ii~G~~~~~~~~~yNs~~vi~~~Gi~~~y~K~~l~~----~e~~~~~~G~~~------------------------~ 126 (259)
T cd07577 75 GAYIVAGLPERDGDKFYNSAVVVGPEGYIGIYRKTHLFY----EEKLFFEPGDTG------------------------F 126 (259)
T ss_pred CcEEEecceeccCCceEEEEEEECCCccEeeEeeccCCh----hhhccccCCCCC------------------------C
Confidence 999999999988889999999998544999999999974 488999999731 1
Q ss_pred ceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCC---
Q 004727 160 GFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG--- 236 (733)
Q Consensus 160 ~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~--- 236 (733)
.+|+++++|+|+.||+|+|||+ ..+.++++|||||++|++++.. .+..+++.||.+|++++++||++|.+.
T Consensus 127 ~~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~Gadli~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~~~~~ 200 (259)
T cd07577 127 RVFDIGDIRIGVMICFDWYFPE-AARTLALKGADIIAHPANLVLP-----YCPKAMPIRALENRVFTITANRIGTEERGG 200 (259)
T ss_pred ceEEeCCcEEEEEEEcCcccch-HHHHHHHcCCCEEEECCccCCc-----hhhhhhhHhhhhcCceEEEEecCcccCCCC
Confidence 5789999999999999999997 5778999999999999997632 234467899999999999999999762
Q ss_pred ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccc
Q 004727 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281 (733)
Q Consensus 237 ~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R 281 (733)
++..|.|.|+|+ |+|+++++++.+.+ +++++++|++.++..|
T Consensus 201 ~~~~~~G~S~i~~p~G~i~~~~~~~~e---~~~~~~id~~~~~~~~ 243 (259)
T cd07577 201 ETLRFIGKSQITSPKGEVLARAPEDGE---EVLVAEIDPRLARDKR 243 (259)
T ss_pred CCceEeeeeEEECCCCCEEeecCCCCC---cEEEEEEchHHhhccc
Confidence 457799999999 99999999987643 6899999999887654
No 40
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=3.6e-37 Score=320.62 Aligned_cols=238 Identities=26% Similarity=0.306 Sum_probs=207.4
Q ss_pred eecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccccc----ccchhhhHHHHHHHhccCCCCce
Q 004727 6 VATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----LDTVTHAWECLKDLLLGDWTDGI 81 (733)
Q Consensus 6 VA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~----~~~~~~~~~~L~~La~~~~~~~i 81 (733)
||++|+++..+|+++|++++.+.+++|+++|+||+||||++++||.+.+.... .+......+.+.++++. +++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~---~~i 77 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKE---LGI 77 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHH---hCe
Confidence 79999999999999999999999999999999999999999999998776542 22334455566666654 899
Q ss_pred eeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhcCcccccccc
Q 004727 82 LCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (733)
Q Consensus 82 ~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~ 160 (733)
.+++|+++..++++||+++++. +|++++.|+|+||++ |.|..||++|+.. .
T Consensus 78 ~ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~~-------------------------~ 129 (253)
T cd07197 78 YIVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDEF-------------------------P 129 (253)
T ss_pred EEEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCCC-------------------------c
Confidence 9999999888889999999998 699999999999987 5688999999753 5
Q ss_pred eeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCCCCCCceee
Q 004727 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (733)
Q Consensus 161 vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~G~~~~~~~ 240 (733)
+|+++++|||+.||+|+|+|+. .+.++.+|+|+|++||++++.. ..++..+++.+|.++++++++||.+|.. ++..
T Consensus 130 ~f~~~~~~ig~~IC~d~~~~~~-~~~~~~~g~dli~~ps~~~~~~--~~~~~~~~~~~A~e~~~~vv~~n~~G~~-~~~~ 205 (253)
T cd07197 130 VFDTPGGKIGLLICYDLRFPEL-ARELALKGADIILVPAAWPTAR--REHWELLLRARAIENGVYVVAANRVGEE-GGLE 205 (253)
T ss_pred eEEcCCceEEEEEEecCCCcHH-HHHHHHCCCcEEEECCcCCCcc--hHHHHHHHHHHHHHhCCeEEEecCCCCC-CCcc
Confidence 7899999999999999999974 7788999999999999998653 4567788999999999999999999988 5788
Q ss_pred ecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 241 fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
|.|.|+|+ |+|+++++.+.+ + +++++++|++.++..|.
T Consensus 206 ~~G~S~i~~p~G~~~~~~~~~-~---~~~~~~id~~~~~~~r~ 244 (253)
T cd07197 206 FAGGSMIVDPDGEVLAEASEE-E---GILVAELDLDELREARK 244 (253)
T ss_pred ccceeEEECCCCceeeecCCC-C---cEEEEEeCHHHHHHHHh
Confidence 99999999 999999999887 3 68999999998887664
No 41
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.2e-36 Score=325.59 Aligned_cols=249 Identities=18% Similarity=0.129 Sum_probs=191.3
Q ss_pred ceecccccccc----cccccchhhHHHHHHHHHH-----cCceeeeCcceeecccccccccccccch-------hhhHHH
Q 004727 5 KVATCNLNNWA----LDFDCNLKNIKESIGRAKE-----AGAVIRLGPELEITGYGCEDHFLELDTV-------THAWEC 68 (733)
Q Consensus 5 kVA~~Qln~~~----~D~e~N~~ri~~~I~~A~~-----~gadLvVfPEl~ltGY~~~D~~~~~~~~-------~~~~~~ 68 (733)
+++++|..... +|+++|+++|+++|++|++ +|||||||||+++|||.+.+......+. ....+.
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~ 81 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEA 81 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHH
Confidence 46778887655 8999999999999999987 4799999999999999987643221111 123344
Q ss_pred HHHHhccCCCCceeeecCcceeeC---ceeeeeEEEEe-cceEEEEecceeeccCCC-------ceee-ecccccccccc
Q 004727 69 LKDLLLGDWTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGN-------YREL-RWFTAWKQKDQ 136 (733)
Q Consensus 69 L~~La~~~~~~~i~iivG~p~~~~---g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~-------f~E~-r~F~~g~~~~~ 136 (733)
|+++++ ++++++++|..++.+ +++||++++|. +|+|++.|+|+||+.... +.|. .+|.+|.
T Consensus 82 l~~~A~---~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~---- 154 (294)
T cd07582 82 LGEKAK---ELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGL---- 154 (294)
T ss_pred HHHHHH---HcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCcc----
Confidence 555555 589999999887653 67999999998 899999999999975311 0110 1111110
Q ss_pred ccccCCchHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHh
Q 004727 137 LEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFI 216 (733)
Q Consensus 137 ~e~~~lp~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~ 216 (733)
... ..+|+++++|||+.||+|+|||+ +.+.++++|||||++|++++...+ ...|..+.+
T Consensus 155 -----------------~~~--~~v~~~~~~~iG~~ICyD~~fpe-~~r~la~~Gadlil~psa~~~~~~-~~~~~~~~~ 213 (294)
T cd07582 155 -----------------DAL--FPVADTEIGNLGCLACEEGLYPE-VARGLAMNGAEVLLRSSSEVPSVE-LDPWEIANR 213 (294)
T ss_pred -----------------ccc--ceeecCCCceEEEEEeecccChH-HHHHHHHCCCcEEEEcCCCCCCcc-hhhHHHHHH
Confidence 000 14688889999999999999997 578899999999999999876543 235556789
Q ss_pred hhccccceEEEeecCCCCCCc---eeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 217 SATHSRGGVYMYSNHQGCDGG---RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 217 ~~A~~~g~~~vyaN~~G~~~~---~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
.||.+|+++++++|++|.++. ...|+|.|+|+ |+|+++++++.+.+ +++++++||++.++..|.+
T Consensus 214 arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ivdp~G~vla~~~~~~~--e~il~~~id~~~~~~~R~~ 282 (294)
T cd07582 214 ARALENLAYVVSANSGGIYGSPYPADSFGGGSMIVDYKGRVLAEAGYGPG--SMVAGAEIDIEALRRARAR 282 (294)
T ss_pred HHHHhcCCEEEEecccccCcccccCceecceeEEECCCCCEEEeCCCCCC--CeEEEEEEcHHHHHHHHHh
Confidence 999999999999999997643 36799999999 99999999988722 3799999999999877743
No 42
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9.9e-37 Score=323.51 Aligned_cols=244 Identities=17% Similarity=0.076 Sum_probs=194.5
Q ss_pred eceecccccccc-cccccchhhHHHHHHHHHHcCceeeeCcceeecccc---ccccc-------ccccchhhhHHHHHHH
Q 004727 4 LKVATCNLNNWA-LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYG---CEDHF-------LELDTVTHAWECLKDL 72 (733)
Q Consensus 4 ~kVA~~Qln~~~-~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~---~~D~~-------~~~~~~~~~~~~L~~L 72 (733)
||||++|+++.. +|++.|+++++++|++|+++|||||||||++++||. ..+.. ....+.....+.++++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSEL 80 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999874 899999999999999999999999999999999863 22221 0011122344455566
Q ss_pred hccCCCCceeeecCc-ceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHh
Q 004727 73 LLGDWTDGILCSFGM-PVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (733)
Q Consensus 73 a~~~~~~~i~iivG~-p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~ 150 (733)
++ ++++.+++|. ++..++++||+++++. +|++ +.|+|+||++++ .|..+|++|+..
T Consensus 81 a~---~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~~---------------- 138 (280)
T cd07574 81 AR---KYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDKL---------------- 138 (280)
T ss_pred HH---HhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCCc----------------
Confidence 65 4899999995 6667889999999998 6776 999999998753 234457887643
Q ss_pred cCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeec
Q 004727 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230 (733)
Q Consensus 151 ~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN 230 (733)
.+|+++++|||+.||+|+|||+ +.+.++++|||||++|++++...+.. ++...+++||.+|++++++||
T Consensus 139 ---------~v~~~~~~~ig~~IC~D~~fpe-~~r~l~~~ga~ii~~ps~~~~~~~~~-~~~~~~~arA~en~~~vv~an 207 (280)
T cd07574 139 ---------KVFDTDLGKIGILICYDSEFPE-LARALAEAGADLLLVPSCTDTRAGYW-RVRIGAQARALENQCYVVQSG 207 (280)
T ss_pred ---------eEEecCCccEEEEEecccccHH-HHHHHHHcCCCEEEECCcCCccccHH-HHHHHHHHHHHhhCceEEEeC
Confidence 4789999999999999999997 57889999999999999987554432 333457899999999999999
Q ss_pred CCCCCC---ceeeecceeEEE-Ec------CeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 231 HQGCDG---GRLYFDGCSCVV-VN------GDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 231 ~~G~~~---~~~~fdG~S~I~-p~------G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
++|.++ ....|.|+|+|+ |+ |.++++++.+. +++++++||++.++..|..
T Consensus 208 ~~G~~~~~~~~~~~~G~S~i~~P~~~~~~~g~~l~~~~~~~---e~~~~a~iD~~~~~~~R~~ 267 (280)
T cd07574 208 TVGNAPWSPAVDVNYGQAAVYTPCDFGFPEDGILAEGEPNT---EGWLIADLDLEALRRLREE 267 (280)
T ss_pred CCCCCCCccccccccccceeecCCCCCCCCCCeEeecCCCC---CceEEEecCHHHHHHHhhc
Confidence 999874 145688999999 85 88999987764 3689999999999887753
No 43
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=5.3e-35 Score=317.16 Aligned_cols=245 Identities=20% Similarity=0.178 Sum_probs=193.1
Q ss_pred ceeceecccccc----cccccccchhhHHHHHHHHHHc--CceeeeCcceeecccccccccccccchhhh-HHHHHHHhc
Q 004727 2 RLLKVATCNLNN----WALDFDCNLKNIKESIGRAKEA--GAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLL 74 (733)
Q Consensus 2 ~~~kVA~~Qln~----~~~D~e~N~~ri~~~I~~A~~~--gadLvVfPEl~ltGY~~~D~~~~~~~~~~~-~~~L~~La~ 74 (733)
..||||++|++. ..+|++.|++++++++++|++. |||||||||++++||...+. ...++.... .+.++.|++
T Consensus 12 ~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~-~~~~~a~~~~g~~~~~l~~ 90 (333)
T PRK13287 12 EGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKW-TTEEFLCTVDGPEVDAFAQ 90 (333)
T ss_pred CceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCcccc-chhhhcccCCCHHHHHHHH
Confidence 469999999996 4689999999999999999874 99999999999999976432 111111111 124455555
Q ss_pred cCCCCceeeecCcceeeC-c-eeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhc
Q 004727 75 GDWTDGILCSFGMPVIKG-S-ERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALK 151 (733)
Q Consensus 75 ~~~~~~i~iivG~p~~~~-g-~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~ 151 (733)
.++++++++++|..++.+ + ++||++++|. +|+|++.|+|+|+.. ..++|+||+..
T Consensus 91 ~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~----------------- 148 (333)
T PRK13287 91 ACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLG----------------- 148 (333)
T ss_pred HHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCC-----------------
Confidence 555689999888876543 3 3999999998 699999999999631 22456777521
Q ss_pred Ccccccccceeeee-hhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeec
Q 004727 152 QKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230 (733)
Q Consensus 152 ~~~vpfG~~vf~~~-~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN 230 (733)
..+|++. |.|||+.||+|+|||+ ..|.++++|||||++||++++... +.|....+++|.+|+++++++|
T Consensus 149 -------~~v~~~~~g~kiG~~ICyD~~fPe-~~R~~a~~GAeill~~s~~~~~~~--~~w~~~~~arA~en~~~vv~an 218 (333)
T PRK13287 149 -------IPVCDGPGGSKLAVCICHDGMFPE-MAREAAYKGANVMIRISGYSTQVR--EQWILTNRSNAWQNLMYTASVN 218 (333)
T ss_pred -------CceEECCCCceEEEEEEecccchH-HHHHHHHCCCeEEEECCccCCcch--hHHHHHHHHHHHhCCcEEEEEe
Confidence 1467764 6799999999999997 577899999999999999987543 3455567889999999999999
Q ss_pred CCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 231 HQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 231 ~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
++|.+ +...|.|+|+|+ |+|+++++++.++ .++++++||++.++..|..
T Consensus 219 ~~G~~-~~~~~~G~S~Iidp~G~vl~~~~~~~---~~ii~aeid~~~~~~~R~~ 268 (333)
T PRK13287 219 LAGYD-GVFYYFGEGQVCNFDGTTLVQGHRNP---WEIVTAEVRPDLADEARLG 268 (333)
T ss_pred ccccC-CCeeeeeeeEEECCCCcEEEeCCCCC---CeEEEEEEeHHHHHHHHHh
Confidence 99988 457788999999 9999999998764 3799999999999988753
No 44
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=5.1e-35 Score=317.94 Aligned_cols=241 Identities=15% Similarity=0.159 Sum_probs=189.0
Q ss_pred eeceecccccc----cccccccchhhHHHHHHHHH--HcCceeeeCcceeecccccc--cccccccch-hhhHHHHHHHh
Q 004727 3 LLKVATCNLNN----WALDFDCNLKNIKESIGRAK--EAGAVIRLGPELEITGYGCE--DHFLELDTV-THAWECLKDLL 73 (733)
Q Consensus 3 ~~kVA~~Qln~----~~~D~e~N~~ri~~~I~~A~--~~gadLvVfPEl~ltGY~~~--D~~~~~~~~-~~~~~~L~~La 73 (733)
.|+||++|++. ...|++.|+++|.+.|++|+ ..|+|||||||++++||... +........ ....+.|++++
T Consensus 12 ~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~i~g~~~~~l~~~A 91 (345)
T PRK13286 12 TVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETASTIPGEETAIFAEAC 91 (345)
T ss_pred ceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhcccCCCHHHHHHHHHH
Confidence 48999999983 34689999999999999987 45899999999999996432 221111122 22234455555
Q ss_pred ccCCCCceeeecCcc-eee----CceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHH
Q 004727 74 LGDWTDGILCSFGMP-VIK----GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEIS 147 (733)
Q Consensus 74 ~~~~~~~i~iivG~p-~~~----~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~ 147 (733)
+ ++++++++|+. +.+ ++.+||++++|+ +|+|++.|+|+|++ .+..+|.||+..
T Consensus 92 ~---~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~-----~~~e~~~pG~~~------------- 150 (345)
T PRK13286 92 R---KAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPW-----CPIEGWYPGDCT------------- 150 (345)
T ss_pred H---HcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCC-----chhhceecCCCC-------------
Confidence 5 47777776654 331 356999999998 79999999999964 244567788743
Q ss_pred HHhcCcccccccceeeee-hhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEE
Q 004727 148 VALKQKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (733)
Q Consensus 148 ~~~~~~~vpfG~~vf~~~-~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~ 226 (733)
.+|++. |.|||+.||+|+|||+ ..|.++++|||||++|++++.. ..++|..+.+++|.+|++++
T Consensus 151 ------------~v~~~~~G~kiG~lIC~D~~fPE-~~R~la~~GAelii~psa~~~~--~~~~~~~~~rarA~eN~~yV 215 (345)
T PRK13286 151 ------------YVSEGPKGLKISLIICDDGNYPE-IWRDCAMKGAELIVRCQGYMYP--AKEQQVLVAKAMAWANNCYV 215 (345)
T ss_pred ------------EEEeCCCCcEEEEEEEecccChH-HHHHHHHcCCeEEEEccccCCC--chHHHHHHHHHHHHHCCCEE
Confidence 356664 5699999999999997 5789999999999999997653 33567778999999999999
Q ss_pred EeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 227 MYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 227 vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
++||++|.+ +...|.|+|+|+ |+|+++++++.++ .++++++||++.++..|..
T Consensus 216 v~aN~~G~~-~~~~~~G~S~Ivdp~G~vla~~~~~~---e~ii~adld~~~i~~~R~~ 269 (345)
T PRK13286 216 AVANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEE---MGIQYAQLSVSQIRDARRN 269 (345)
T ss_pred EEEeccccc-CCceeeeeEEEECCCCcEEEecCCCC---CeEEEEEEeHHHHHHHHHh
Confidence 999999987 456899999999 9999999988764 3799999999999988753
No 45
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=5.1e-34 Score=301.60 Aligned_cols=223 Identities=18% Similarity=0.127 Sum_probs=184.1
Q ss_pred eceeccccccccc------ccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCC
Q 004727 4 LKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW 77 (733)
Q Consensus 4 ~kVA~~Qln~~~~------D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~ 77 (733)
+|||++|+|+..+ |.++|+++++++|++|+++|+||+||||++++||... ....+++|.+.++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~-----------~~~~~~~l~~~ak 69 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQR-----------DPDALARLARAAR 69 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccccc-----------CHHHHHHHHHHHH
Confidence 5899999998776 7899999999999999999999999999999999611 1223444544444
Q ss_pred CCceeeecCcceeeC--ceeeeeEEEEe-cceEEEEecceeeccCCCc---------------eeeeccccccccccccc
Q 004727 78 TDGILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDGNY---------------RELRWFTAWKQKDQLED 139 (733)
Q Consensus 78 ~~~i~iivG~p~~~~--g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f---------------~E~r~F~~g~~~~~~e~ 139 (733)
++++.+++|++++.+ +++||+++++. +|++++.|+|+||++++++ .|.++|.+|+..
T Consensus 70 ~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~----- 144 (270)
T cd07571 70 AVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGP----- 144 (270)
T ss_pred hcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCC-----
Confidence 689999999988765 48999999998 6889999999999987653 467788887643
Q ss_pred cCCchHHHHHhcCcccccccceeeeeh-hhHHHHHhhhhcCCCCCcccccccceEEEecCCCchh-hh-hhhhHHHHHHh
Q 004727 140 FQLPNEISVALKQKSVPFGYGFIQFLD-TAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH-QL-RKLDYRIRAFI 216 (733)
Q Consensus 140 ~~lp~~i~~~~~~~~vpfG~~vf~~~~-~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~-~~-gk~~~r~~li~ 216 (733)
.+|++++ .|+|+.||+|+|+|+ ..+.++++|||+|++||++.+ .. ....++..+.+
T Consensus 145 --------------------~vf~~~~~~r~g~~IC~D~~fpe-~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~ 203 (270)
T cd07571 145 --------------------QPLLLGGGVRVGPLICYESIFPE-LVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMAR 203 (270)
T ss_pred --------------------CccccCCCceEEEEEEeeeeChH-HHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHH
Confidence 4788888 999999999999997 577899999999999998543 11 12345567789
Q ss_pred hhccccceEEEeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhh
Q 004727 217 SATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDA 276 (733)
Q Consensus 217 ~~A~~~g~~~vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~ 276 (733)
.||.+|++++|+||+. |.|+|+ |+|+++++.+.+. +++++++||++.
T Consensus 204 arA~en~~~vv~~n~~----------G~S~ivdp~G~ii~~~~~~~---e~~~~~~i~~~~ 251 (270)
T cd07571 204 LRAIETGRPLVRAANT----------GISAVIDPDGRIVARLPLFE---AGVLVAEVPLRT 251 (270)
T ss_pred HHHHHhCCCEEEEcCC----------eeeEEECCCCcEEeecCCCc---ceEEEEEeccCC
Confidence 9999999999999975 568999 9999999998774 378999999865
No 46
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.97 E-value=6.3e-33 Score=296.28 Aligned_cols=226 Identities=19% Similarity=0.241 Sum_probs=161.8
Q ss_pred ceecccccccccccccchhhHHHHHHHHHH----cCceeeeCcceeecccccccccccccch-----hhhHHHHHHHhcc
Q 004727 5 KVATCNLNNWALDFDCNLKNIKESIGRAKE----AGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLG 75 (733)
Q Consensus 5 kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~----~gadLvVfPEl~ltGY~~~D~~~~~~~~-----~~~~~~L~~La~~ 75 (733)
|||++|++++.+|++.|++++.++|++|++ +|++||||||+++|||.+.+......+. ....+.++++++
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk- 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAK- 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHH-
Confidence 799999999889999999999999999998 8999999999999999876532211111 122344555554
Q ss_pred CCCCceeeecCcceeeC---ceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHHhc
Q 004727 76 DWTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALK 151 (733)
Q Consensus 76 ~~~~~i~iivG~p~~~~---g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~ 151 (733)
+++++|++|++++.+ +++||++++|. +|++++.|+|+||++. |..||.++.... ...+..+ +.|
T Consensus 80 --~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~----~~~~~~~e~~~~-~~~~~~~-----~~G 147 (295)
T cd07566 80 --KFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYT----DEEWGCEENPGG-FQTFPLP-----FAK 147 (295)
T ss_pred --hcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCC----CcccccCCCCCc-ccccccc-----ccc
Confidence 589999999998754 48999999998 8999999999999864 334554443210 0000000 001
Q ss_pred CcccccccceeeeehhhHHHHHhhhhc---C--C----CCCcccccccceEEEecCCCchhhhhhhh-------HH---H
Q 004727 152 QKSVPFGYGFIQFLDTAVAAEICEELF---T--P----IPPHADLALNGVEVFMNASGSHHQLRKLD-------YR---I 212 (733)
Q Consensus 152 ~~~vpfG~~vf~~~~~riGv~ICeDlw---~--p----~~~~~~la~~GadiIlnpSas~~~~gk~~-------~r---~ 212 (733)
....+ .++.+.++|||+.||||+| | | | ..+.++++|||||++|++|+...+... .| .
T Consensus 148 ~~~~~---~~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E-~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~ 223 (295)
T cd07566 148 DDDFD---GGSVDVTLKTSIGICMDLNPYKFEAPFTDFE-FATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETV 223 (295)
T ss_pred ccccc---ccccCCcceeEEEEEecCCcccccCCcchHH-HHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHH
Confidence 10000 1223347899999999996 7 5 5 577899999999999999975433100 11 1
Q ss_pred HHHhhhc------cccceEEEeecCCCCCCceeeecceeEEE
Q 004727 213 RAFISAT------HSRGGVYMYSNHQGCDGGRLYFDGCSCVV 248 (733)
Q Consensus 213 ~li~~~A------~~~g~~~vyaN~~G~~~~~~~fdG~S~I~ 248 (733)
.+.+.|+ .+|++++++||++|.+ ++..|.|+|+|+
T Consensus 224 ~~~~~ra~~~~a~~eN~~~vv~~Nr~G~~-~~~~f~G~S~i~ 264 (295)
T cd07566 224 SYWLQRFEPLRAEPLEGTQVVFCNRIGTE-NDTLYAGSSAVI 264 (295)
T ss_pred HHHHHhhcccccCCCCceEEEEEeccCcc-CCceecCcccee
Confidence 2334444 4999999999999988 568899999987
No 47
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=5.7e-32 Score=266.98 Aligned_cols=249 Identities=16% Similarity=0.113 Sum_probs=195.6
Q ss_pred eceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhh-hHHHHHHHhccCCCCcee
Q 004727 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTH-AWECLKDLLLGDWTDGIL 82 (733)
Q Consensus 4 ~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~-~~~~L~~La~~~~~~~i~ 82 (733)
.+||+||++. ..|...|++...++|.+|+++||+++.|||.+= |-..+....-++.+. .-+.+++..+.+++++|+
T Consensus 16 ~~vAv~Qm~S-~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--Fi~~n~~esi~Lae~l~~k~m~~y~elar~~nIw 92 (295)
T KOG0807|consen 16 KRVAVAQMTS-SNDLTKNLATCKELISEAAQKGAKLIFLPEAFD--FIGQNPLESIELAEPLDGKFMEQYRELARSHNIW 92 (295)
T ss_pred ceeEEEeecc-chHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--hhcCCcccceecccccChHHHHHHHHHHHhcCee
Confidence 6899999975 589999999999999999999999999999862 222222222222222 234444454444579999
Q ss_pred eecCcce-eeC---ceeeeeEEEEe-cceEEEEecceeecc-----CCCceeeeccccccccccccccCCchHHHHHhcC
Q 004727 83 CSFGMPV-IKG---SERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (733)
Q Consensus 83 iivG~p~-~~~---g~lYN~a~vi~-~G~Il~~~~K~~Lp~-----~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~~~~ 152 (733)
+-+|... +.+ .++||+-++|+ .|+|+..|+|+||++ .+.+.|+..-.||...
T Consensus 93 lSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i------------------ 154 (295)
T KOG0807|consen 93 LSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAI------------------ 154 (295)
T ss_pred EEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCccc------------------
Confidence 9999533 332 68999999998 999999999999954 3445566555565542
Q ss_pred cccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccceEEEeecCC
Q 004727 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (733)
Q Consensus 153 ~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g~~~vyaN~~ 232 (733)
...++++-+|+|..||||++||+ ++..+...||+|+..|||.....|+. +|+-|+++||.+++|+||.+.++
T Consensus 155 ------~~pv~tP~GklGlaICYDiRFpE-~sl~LR~~gA~iLtyPSAFT~~TG~A-HWEiLlRARAietQCYVvaaaQ~ 226 (295)
T KOG0807|consen 155 ------ESPVDTPLGKLGLAICYDIRFPE-LSLKLRKMGAQILTYPSAFTIKTGEA-HWEILLRARAIETQCYVVAAAQV 226 (295)
T ss_pred ------CCccCCcccccceeeeeeccCch-HHHHHHHcCCcEEeccchhhhcccHH-HHHHHHHHHHhhcceEEEehhhc
Confidence 03467788899999999999997 57788899999999999988777764 78889999999999999999999
Q ss_pred CCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccccc
Q 004727 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (733)
Q Consensus 233 G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~~ 283 (733)
|.....-.-.|+|||+ |+|.|+++.+.-+ ..++++|+||++.++..|..
T Consensus 227 G~HneKR~SyGhSMiVDPWGtVva~~se~~--~~~l~~AdiDlslld~lr~~ 276 (295)
T KOG0807|consen 227 GKHNEKRESYGHSMIVDPWGTVVARCSERT--GPGLILADIDLSLLDSLRTK 276 (295)
T ss_pred ccccchhhccCcceEEcchhhhheecCCCC--CCceEEEEccHHHHHHHHHh
Confidence 9764444567999999 9999999998654 25899999999999888754
No 48
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.94 E-value=7.5e-29 Score=246.66 Aligned_cols=176 Identities=29% Similarity=0.358 Sum_probs=139.3
Q ss_pred ceecccccc--cccccccchhhHHHHHHHHHHcCceeeeCcceeecccc----cccccccccchhhh--HHHHHHHhccC
Q 004727 5 KVATCNLNN--WALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYG----CEDHFLELDTVTHA--WECLKDLLLGD 76 (733)
Q Consensus 5 kVA~~Qln~--~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~----~~D~~~~~~~~~~~--~~~L~~La~~~ 76 (733)
|||++|+++ +..|+++|++++.+++++|+++|+|||||||++++||. +.+........... ...+..|.+.+
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 80 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELA 80 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHH
Confidence 799999998 88999999999999999999999999999999999993 33332221111110 23334444444
Q ss_pred CCCceeeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCce-eeeccccccccccccccCCchHHHHHhcCcc
Q 004727 77 WTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYR-ELRWFTAWKQKDQLEDFQLPNEISVALKQKS 154 (733)
Q Consensus 77 ~~~~i~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~-E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~ 154 (733)
+++++.+++|++...++++||+++++. +|++++.|+|+||+++++|. |.+||.+|....
T Consensus 81 ~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~------------------- 141 (186)
T PF00795_consen 81 KENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPF------------------- 141 (186)
T ss_dssp HHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSES-------------------
T ss_pred HhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeecccee-------------------
Confidence 458999999999999999999999999 79999999999999999999 999999984320
Q ss_pred cccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCC
Q 004727 155 VPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASG 200 (733)
Q Consensus 155 vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSa 200 (733)
..|...+++++|+|||+.||||+|||+ ..+.++.+|||||+||||
T Consensus 142 ~~~~~~~~~~~g~~ig~~ICyd~~fp~-~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 142 PVFETPVFDFGGGRIGVLICYDLRFPE-LVRELAKQGADILINPSA 186 (186)
T ss_dssp EEEEETETEETTEEEEEEEGGGGGSHH-HHHHHHHTTESEEEEEE-
T ss_pred eeeecceeeeccceEEEEEEcccCChH-HHHHHHHCCCCEEEeCCC
Confidence 012223567789999999999999997 467899999999999986
No 49
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.6e-27 Score=247.06 Aligned_cols=247 Identities=18% Similarity=0.124 Sum_probs=201.6
Q ss_pred ceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccccc--ccc-----hhhhHHHHHHHhc
Q 004727 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE--LDT-----VTHAWECLKDLLL 74 (733)
Q Consensus 2 ~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~--~~~-----~~~~~~~L~~La~ 74 (733)
..+++|++|+.....+...|++.....+++|+++|++||||||.+++||.+.+-|.. ++. ...+...++++++
T Consensus 12 ~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va~ 91 (298)
T KOG0806|consen 12 PNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVAE 91 (298)
T ss_pred cccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHHHh
Confidence 458999999999888999999999999999999999999999999999999544332 111 1234556777777
Q ss_pred cCCCCceeeecCcceee--CceeeeeEEEEe-cceEEEEecceeeccCC-----CceeeeccccccccccccccCCchHH
Q 004727 75 GDWTDGILCSFGMPVIK--GSERYNCQVLCL-NRKIIMIRPKLWLANDG-----NYRELRWFTAWKQKDQLEDFQLPNEI 146 (733)
Q Consensus 75 ~~~~~~i~iivG~p~~~--~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g-----~f~E~r~F~~g~~~~~~e~~~lp~~i 146 (733)
+ +.++++.|.++.. .++.||++.++. +|..++.|+|.||++-. -|+|...|.+|...
T Consensus 92 ~---~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f------------ 156 (298)
T KOG0806|consen 92 R---LSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQF------------ 156 (298)
T ss_pred h---ceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCC------------
Confidence 5 8899999976654 479999999998 99999999999998642 27888899998864
Q ss_pred HHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCch---hhhhhhhHHHHHHhhhccccc
Q 004727 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSH---HQLRKLDYRIRAFISATHSRG 223 (733)
Q Consensus 147 ~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~---~~~gk~~~r~~li~~~A~~~g 223 (733)
.++.+..+|||+.||+|+|||+ +.+.++++||++|+.|++|. -..+ ..+|.-+.++++..|.
T Consensus 157 -------------~~~~~~~gkfGi~IC~Di~F~d-~A~~~~~~g~~~ivyPtaw~~~~l~~~-~~hw~~~~~~~a~~n~ 221 (298)
T KOG0806|consen 157 -------------TVVDTSYGKFGIFICFDIRFYD-PAMILVKDGADLIVYPTAWNNELLSAV-PLHWALLMRARANDNA 221 (298)
T ss_pred -------------CcccCCCCceEEEEEecccccc-hHHHHHHcCCcEEEecchHhhhccccc-chHHHHHHhCCcccce
Confidence 2455566999999999999996 67899999999999999987 2222 2356667889999999
Q ss_pred eEEEeecCCCCCCceeeecc-eeEEE-EcCeEeeecccccccceEEEEEEeehhhhccccc
Q 004727 224 GVYMYSNHQGCDGGRLYFDG-CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (733)
Q Consensus 224 ~~~vyaN~~G~~~~~~~fdG-~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R~ 282 (733)
.+++.+|..+...+.....| +|.+. |.|+||+....- .+++++++|++.+.+.|.
T Consensus 222 ~~v~~~s~~~~~s~~y~~~gshs~~~~p~gkvl~a~~~~----~e~~~a~~d~~~~~~~rq 278 (298)
T KOG0806|consen 222 ANVHAPSPARTGSGIYAPRGSHSIMVNPTGKVLAAAVEK----EEIIYADVDPSAIASRRQ 278 (298)
T ss_pred eeeeccCcCcCCceeeecCCcceeecCCcceEeeeccCC----CccccccCCHHHHHHHhc
Confidence 99999999886655556677 89999 999999987653 358899999998876664
No 50
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.92 E-value=8.1e-26 Score=259.26 Aligned_cols=224 Identities=21% Similarity=0.132 Sum_probs=173.0
Q ss_pred eeceecccccccc------cccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccC
Q 004727 3 LLKVATCNLNNWA------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD 76 (733)
Q Consensus 3 ~~kVA~~Qln~~~------~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~ 76 (733)
.+|||++|.|... .+.+.|++++.+.++++ ++|+||||+||.++++|. .+. .....+.+.++++
T Consensus 219 ~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~~------~~~~~~~l~~~a~-- 288 (505)
T PRK00302 219 ALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-EDL------PQAFLKALDDLAR-- 288 (505)
T ss_pred CcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-ccc------cHHHHHHHHHHHH--
Confidence 4899999999765 56778999999999844 579999999999998773 211 1122334556665
Q ss_pred CCCceeeecCcceeeC---c-eeeeeEEEEecceEEEEecceeeccCCCceeee---------------ccccccccccc
Q 004727 77 WTDGILCSFGMPVIKG---S-ERYNCQVLCLNRKIIMIRPKLWLANDGNYRELR---------------WFTAWKQKDQL 137 (733)
Q Consensus 77 ~~~~i~iivG~p~~~~---g-~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~E~r---------------~F~~g~~~~~~ 137 (733)
++++.+++|.+...+ + +.||+++++++|+++..|+|+||.++|+|-..+ .|++|+.
T Consensus 289 -~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~---- 363 (505)
T PRK00302 289 -EKGSALITGAPRAENKQGRYDYYNSIYVLGPYGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPY---- 363 (505)
T ss_pred -hCCCEEEEecccccCCCCCCceeeEEEEECCCCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCC----
Confidence 478999999886543 3 689999999989999999999999888753211 2333321
Q ss_pred cccCCchHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchh-hhhh-hhHHHHHH
Q 004727 138 EDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH-QLRK-LDYRIRAF 215 (733)
Q Consensus 138 e~~~lp~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~-~~gk-~~~r~~li 215 (733)
+..++++++.|+|+.||||.+||+ ..+.++++|||+|+|+|+..+ .... ..++..+.
T Consensus 364 --------------------~~~v~~~~~~~ig~~ICyE~~fpe-~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~ 422 (505)
T PRK00302 364 --------------------VQPPLLAKGLKLAPLICYEIIFPE-EVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMA 422 (505)
T ss_pred --------------------CCCCcccCCceEEEEEeehhcChH-HHHhhccCCCCEEEEccchhhcCCCCchHHHHHHH
Confidence 124688899999999999999997 567888999999999999543 1111 33566788
Q ss_pred hhhccccceEEEeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehh
Q 004727 216 ISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLD 275 (733)
Q Consensus 216 ~~~A~~~g~~~vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~ 275 (733)
+.||.||+.+++.+|+. |.|.|+ |+|+++++.+.+++ +++++++|+.
T Consensus 423 ~~RAiEng~~vvra~n~----------G~Saiidp~G~i~~~~~~~~~---~~l~~~i~~~ 470 (505)
T PRK00302 423 RMRALELGRPLIRATNT----------GITAVIDPLGRIIAQLPQFTE---GVLDGTVPPT 470 (505)
T ss_pred HHHHHHhCCceEEecCc----------eeeEEECCCCCEeeecCCCce---eEEEEEeccC
Confidence 99999999999999875 467888 99999999998753 7888998874
No 51
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.91 E-value=9.6e-26 Score=250.77 Aligned_cols=204 Identities=20% Similarity=0.128 Sum_probs=159.8
Q ss_pred eeceeccccccccc------ccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccC
Q 004727 3 LLKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD 76 (733)
Q Consensus 3 ~~kVA~~Qln~~~~------D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~ 76 (733)
.+|||++|.|.... +.+.|++++.+.+++|++ |+||||+||.++++|...+. +...+.++++++
T Consensus 159 ~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~~-------~~~~~~l~~~a~-- 228 (391)
T TIGR00546 159 TLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENSP-------QKLADRLKLLVL-- 228 (391)
T ss_pred cceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhCc-------HHHHHHHHHHHH--
Confidence 58999999998654 467899999999999877 99999999999999853221 112344555554
Q ss_pred CCCceeeecCcceeeCc---eeeeeEEEEe-cceEEEEecceeeccCCCceee----------------ecccccccccc
Q 004727 77 WTDGILCSFGMPVIKGS---ERYNCQVLCL-NRKIIMIRPKLWLANDGNYREL----------------RWFTAWKQKDQ 136 (733)
Q Consensus 77 ~~~~i~iivG~p~~~~g---~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~----------------r~F~~g~~~~~ 136 (733)
++++.+++|.+...++ +.||++++++ +|++++.|+|+||.++|+|-.- ++|++|+.
T Consensus 229 -~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~--- 304 (391)
T TIGR00546 229 -SKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPG--- 304 (391)
T ss_pred -hCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCCC---
Confidence 4789999998876443 7999999998 7999999999999988875331 23333332
Q ss_pred ccccCCchHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhh--hhhHHHHH
Q 004727 137 LEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRA 214 (733)
Q Consensus 137 ~e~~~lp~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~g--k~~~r~~l 214 (733)
..+|++++.|+|+.||+|.+||+ ..+.++++|||+|+|+|++.+--. ...++..+
T Consensus 305 ----------------------~~~~~~~~~~~g~~ICyE~~fp~-~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~ 361 (391)
T TIGR00546 305 ----------------------PQVLKLPGGKIAPLICYESIFPD-LVRASARQGAELLVNLTNDAWFGDSSGPWQHFAL 361 (391)
T ss_pred ----------------------CCCCcCCCceeeeeEEeehhchH-HHHhhccCCCCEEEEecchhhcCCCCChHHHHHH
Confidence 14677888999999999999997 467889999999999999765222 13466678
Q ss_pred HhhhccccceEEEeecCCCCCCceeeecceeEEE-EcCeE
Q 004727 215 FISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDM 253 (733)
Q Consensus 215 i~~~A~~~g~~~vyaN~~G~~~~~~~fdG~S~I~-p~G~v 253 (733)
.+.||.||+.+++.||+.| .|+|+ |+|+|
T Consensus 362 ~~~RAiEn~~~vvra~n~G----------~S~vidp~G~i 391 (391)
T TIGR00546 362 ARFRAIENGRPLVRATNTG----------ISAVIDPRGRT 391 (391)
T ss_pred HHHHHHHhCCcEEEecCCc----------eeEEECCCCCC
Confidence 8999999999999999865 57888 89975
No 52
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.90 E-value=5.8e-24 Score=210.63 Aligned_cols=245 Identities=16% Similarity=0.152 Sum_probs=196.5
Q ss_pred CceeceecccccccccccccchhhHHHHHHHHHHcCceeeeCcceeeccccccccccc----------ccchh---hhH-
Q 004727 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----------LDTVT---HAW- 66 (733)
Q Consensus 1 M~~~kVA~~Qln~~~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~----------~~~~~---~~~- 66 (733)
|.+.||+++|......|-...++++++.+.+|++.||+|+||||.+|.||+-+..|.- .+|.. .+.
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe 94 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE 94 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence 5678999999999999999999999999999999999999999999999997665531 12211 111
Q ss_pred ---HHHHHHhccCCCCceeeecCcceeeCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCC
Q 004727 67 ---ECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQL 142 (733)
Q Consensus 67 ---~~L~~La~~~~~~~i~iivG~p~~~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~l 142 (733)
..+..|+..++++++++++|..++++..+|-++++++ .|..++.+||. +|+.. |+-.+-.|+..
T Consensus 95 v~gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKl-mPTal---ERciWGqGDGS-------- 162 (337)
T KOG0805|consen 95 VPGPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKL-MPTAL---ERCIWGQGDGS-------- 162 (337)
T ss_pred CCChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCcccccccccc-ccchh---hheeeccCCCc--------
Confidence 2345555555568999999999999999999999998 89999999998 77654 55555555533
Q ss_pred chHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhcccc
Q 004727 143 PNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSR 222 (733)
Q Consensus 143 p~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~ 222 (733)
++ +||+++-++||..|||+.+.|. ....|..+|++|.+.|++.. ...|..-++..|.|-
T Consensus 163 -----------Ti----PV~dT~iGKIG~AICWEN~MPl-~R~alY~KgieIycAPT~D~-----r~~w~~sM~~IAlEG 221 (337)
T KOG0805|consen 163 -----------TI----PVYDTPIGKIGAAICWENRMPL-YRTALYAKGIEIYCAPTADG-----RKEWQSSMLHIALEG 221 (337)
T ss_pred -----------cc----ceeecccchhceeeecccccHH-HHHHHHhcCcEEEeccCCCC-----cHHHHHhhhheeecC
Confidence 33 5799999999999999999994 34467789999999999864 246777889999999
Q ss_pred ceEEEeecCCCCC-------------------CceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccc
Q 004727 223 GGVYMYSNHQGCD-------------------GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281 (733)
Q Consensus 223 g~~~vyaN~~G~~-------------------~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R 281 (733)
+|+++.++|.-.. .+..+-.|+|.|+ |-|+|++. |.|.. +++++|++|++.+.+.|
T Consensus 222 ~cFvlSA~QF~k~~d~p~~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~Vlag-P~~~~--EgL~tadldl~dIA~ak 297 (337)
T KOG0805|consen 222 GCFVLSACQFCKRKDFPDHPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAG-PNFES--EGLITADLDLGDIARAK 297 (337)
T ss_pred ceEEEEhhhhcccccCCCCchhhcccchhccCCCcceecCCcEEEccccceecC-CCcCc--cceEEEeccchhhhhhc
Confidence 9999999996211 2456788999999 99999985 55643 48999999999987555
No 53
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.88 E-value=6.8e-23 Score=204.16 Aligned_cols=248 Identities=17% Similarity=0.169 Sum_probs=190.6
Q ss_pred ceeceeccccccc-------ccccccchhhHHHHHHHHHHcCceeeeCcceeecccc-c-ccccccccch-----hhhHH
Q 004727 2 RLLKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYG-C-EDHFLELDTV-----THAWE 67 (733)
Q Consensus 2 ~~~kVA~~Qln~~-------~~D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~-~-~D~~~~~~~~-----~~~~~ 67 (733)
+.++|+++|-... .....+-.+|+...|+.|+..|+.+++|.|.+..-|. | .......+|. ..+.+
T Consensus 72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~ 151 (387)
T KOG0808|consen 72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK 151 (387)
T ss_pred cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence 4689999996532 1223445678888899999999999999999876553 2 1221122222 23456
Q ss_pred HHHHHhccCCCCceeeecCccee---eCceeeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCc
Q 004727 68 CLKDLLLGDWTDGILCSFGMPVI---KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (733)
Q Consensus 68 ~L~~La~~~~~~~i~iivG~p~~---~~g~lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp 143 (733)
.+++|++. ++|+|+-...++ ++..++|++++|. +|.|++..||.|+|.-|.|.|+.|+-.|+-
T Consensus 152 flqklakk---hdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~l---------- 218 (387)
T KOG0808|consen 152 FLQKLAKK---HDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDL---------- 218 (387)
T ss_pred HHHHHHhh---CCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCC----------
Confidence 78888875 898877655554 5678999999998 899999999999999999999999988763
Q ss_pred hHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhhhhHHHHHHhhhccccc
Q 004727 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (733)
Q Consensus 144 ~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~~~r~~li~~~A~~~g 223 (733)
|.+||++..+|||+.|||--.+|..+ -.++++|||||+|||+.--.+... .|---.+.+|+.|.
T Consensus 219 --------------ghpvfet~fgriavnicygrhhplnw-lmy~lngaeiifnpsatvgalsep-lwpiearnaaianh 282 (387)
T KOG0808|consen 219 --------------GHPVFETVFGRIAVNICYGRHHPLNW-LMYGLNGAEIIFNPSATVGALSEP-LWPIEARNAAIANH 282 (387)
T ss_pred --------------CCceeeeecceEEEEeeccCCCchhh-hhhhccCceEEECCccccccccCc-cCchhhhhhhhhhc
Confidence 45899999999999999999999654 478899999999999974333221 22223577889999
Q ss_pred eEEEeecCCCCC--------C-------ceeeecceeEEE-EcCeEeeecccccccceEEEEEEeehhhhcccc
Q 004727 224 GVYMYSNHQGCD--------G-------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281 (733)
Q Consensus 224 ~~~vyaN~~G~~--------~-------~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~vDl~~~~~~R 281 (733)
++.+..|++|.+ | +--+|.|+|.+. |++...-..++.. .+++++++||...+++.
T Consensus 283 ~ft~~inrvgtevfpneftsgdgkpah~dfghfygssy~aapd~srtp~lsr~r---dgllia~ldlnlcrq~k 353 (387)
T KOG0808|consen 283 YFTGSINRVGTEVFPNEFTSGDGKPAHNDFGHFYGSSYFAAPDASRTPSLSRYR---DGLLIADLDLNLCRQYK 353 (387)
T ss_pred eEEEeecccccccCCCcccCCCCCcccccccccccceeeecCCCCCCccccccc---cceEEeecchHHHHHhh
Confidence 999999999954 1 224689999999 9998776666654 48999999999988764
No 54
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.83 E-value=3.1e-21 Score=215.44 Aligned_cols=188 Identities=12% Similarity=0.021 Sum_probs=143.5
Q ss_pred eceeccccccccc------ccccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCC
Q 004727 4 LKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW 77 (733)
Q Consensus 4 ~kVA~~Qln~~~~------D~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~ 77 (733)
.+|+++|.|..+. ..+.|++++.+.+++|.+.|+|+||+||.++++|...+ ...++.|++.+
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~~-----------~~~~~~l~~~~- 262 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNNS-----------PILLDKLKELS- 262 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhhC-----------HHHHHHHHHhc-
Confidence 4899999996432 13578899999999998899999999999987653211 12344444442
Q ss_pred CCceeeecCcceeeCceeeeeEEEEecceEEEEecceeeccCCCce----------------eeeccccccccccccccC
Q 004727 78 TDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYR----------------ELRWFTAWKQKDQLEDFQ 141 (733)
Q Consensus 78 ~~~i~iivG~p~~~~g~lYN~a~vi~~G~Il~~~~K~~Lp~~g~f~----------------E~r~F~~g~~~~~~e~~~ 141 (733)
.++.+++|.+..++++.||+++++.+|+ +..|+|+||.++|+|- |...|++|+..
T Consensus 263 -~~~~ii~G~~~~~~~~~yNS~~vi~~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~------- 333 (418)
T PRK12291 263 -HKITIITGALRVEDGHIYNSTYIFSKGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKF------- 333 (418)
T ss_pred -cCCcEEEeeeeccCCceEEEEEEECCCC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCC-------
Confidence 5788999988776678999999998887 7899999999988742 33345555432
Q ss_pred CchHHHHHhcCcccccccceeeeehhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhh--hhhHHHHHHhhhc
Q 004727 142 LPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFISAT 219 (733)
Q Consensus 142 lp~~i~~~~~~~~vpfG~~vf~~~~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~g--k~~~r~~li~~~A 219 (733)
.++++++.|+|+.||||.+||+. .+ +|+|+++|+|++.|--+ ...++..+++.||
T Consensus 334 ------------------~~~~~~g~~ig~lICYE~~Fpel-~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RA 390 (418)
T PRK12291 334 ------------------SDFTLDGVKFRNAICYEATSEEL-YE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYA 390 (418)
T ss_pred ------------------cceeeCCeEEEEEEeeeecchHh-hc----cCCCEEEEecccccCCCChhHHHHHHHHHHHH
Confidence 46788899999999999999964 22 89999999998766211 1235566788899
Q ss_pred cccceEEEeecCCCCC
Q 004727 220 HSRGGVYMYSNHQGCD 235 (733)
Q Consensus 220 ~~~g~~~vyaN~~G~~ 235 (733)
.|+|.+++.+.+.|.+
T Consensus 391 iE~g~pvvratNtGiS 406 (418)
T PRK12291 391 RKYGKTIYHSANGSPS 406 (418)
T ss_pred HHhCCcEEEEcCCcee
Confidence 9999999999988865
No 55
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.65 E-value=6.1e-17 Score=178.66 Aligned_cols=171 Identities=12% Similarity=0.041 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeeecCcceeeCceeeeeEEE
Q 004727 22 LKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVL 101 (733)
Q Consensus 22 ~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~iivG~p~~~~g~lYN~a~v 101 (733)
.+++++.+++|+++|+|+||+||.++++|..... . .+.+.++ ++++.+++|.++.+++++||++++
T Consensus 208 ~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~~----~-------~~~~~l~---~~~i~II~G~~~~~~~~~yNsa~v 273 (388)
T PRK13825 208 RRELIATVRAAAAAGARVVVLPESALGFWTPTTE----R-------LWRESLR---GSDVTVIAGAAVVDPGGYDNVLVA 273 (388)
T ss_pred HHHHHHHHHhhcccCCCEEEccCccccccccccc----H-------HHHHHHH---hCCCeEEEEeeecCCCCceEEEEE
Confidence 3356677788888899999999999999853111 0 1122232 478999999888778889999999
Q ss_pred EecceEEEEecceeeccCCCce-------eeeccccccccccccccCCchHHHHHhcCcccccccceeeeehhhHHHHHh
Q 004727 102 CLNRKIIMIRPKLWLANDGNYR-------ELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEIC 174 (733)
Q Consensus 102 i~~G~Il~~~~K~~Lp~~g~f~-------E~r~F~~g~~~~~~e~~~lp~~i~~~~~~~~vpfG~~vf~~~~~riGv~IC 174 (733)
+++++....|+|+||.++|+|. |..+|++|. +++.+|++++.|+|+.||
T Consensus 274 ~~~~G~~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~------------------------~~~~vf~l~g~rvg~lIC 329 (388)
T PRK13825 274 ISAGGGRILYRERMPVPVSMWQPWRPWTGQGGGARAHF------------------------FANPVVEIDGRRAAPLIC 329 (388)
T ss_pred EeCCCCeeeEeeeeCcCccccCchHHhhccccCCCCCC------------------------CCCCceeeCCeEEEEEEe
Confidence 9854335599999998777643 333333321 123578889999999999
Q ss_pred hhhcCCCCCcccccccceEEEecCCCchhhhhhh--hHHHHHHhhhccccceEEEeecC
Q 004727 175 EELFTPIPPHADLALNGVEVFMNASGSHHQLRKL--DYRIRAFISATHSRGGVYMYSNH 231 (733)
Q Consensus 175 eDlw~p~~~~~~la~~GadiIlnpSas~~~~gk~--~~r~~li~~~A~~~g~~~vyaN~ 231 (733)
||..||. |.....++|+|+|+++|+.-|.-+.. .+...+.+.+|+|+|.+++.|.+
T Consensus 330 YE~~F~~-pel~~~~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 330 YEQLLVW-PVLQSMLHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred eeecCcH-HHHHhhccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 9998843 22233379999999999876643322 34567889999999999988754
No 56
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.63 E-value=2.8e-16 Score=170.65 Aligned_cols=165 Identities=22% Similarity=0.260 Sum_probs=100.2
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcC------
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN------ 422 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~------ 422 (733)
++++||||||+|||++|+|+ .+ +|.+ |++++|-...
T Consensus 1 ~kV~vamSGGVDSsvaA~LL-------k~---~G~~----------------------------V~Gv~m~~~~~~~~~~ 42 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALL-------KE---QGYD----------------------------VIGVTMRNWDEEDESG 42 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHH-------HH---CT-E----------------------------EEEEEEE-SS-SSSHH
T ss_pred CeEEEEccCCHHHHHHHHHH-------Hh---hccc----------------------------ceEEEEEEeccccccC
Confidence 47999999999999999997 33 3666 5788885332
Q ss_pred ---ChHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHh--hhCCCCceeecCCccccccchhhHHHHHHHHHHHHH
Q 004727 423 ---SSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFML 496 (733)
Q Consensus 423 ---ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~~~--~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~ 496 (733)
+++++.++|+.+|+.|||+|+++|+.+.|.. +++.|.+ ..|.+| ++++++|-+-++...+-+
T Consensus 43 ~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TP----------NPcv~CN~~IKF~~l~~~-- 110 (356)
T PF03054_consen 43 KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTP----------NPCVLCNRFIKFGALLEY-- 110 (356)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT--------------HHHHHHHHTTTTHHHHH--
T ss_pred CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCC----------ChHHhhchhhhHHHHHHH--
Confidence 3467899999999999999999999988864 4444443 235544 788999988777764444
Q ss_pred HhhcccccCCCcEEEEeccCcccccccc-----cccccc-----CC------------CCCCCCCCCCcHHhHHHHHHHH
Q 004727 497 ASLLPWVHNKPGFYLVLGSSNVDEGLRG-----YLTKYD-----CS------------SADINPIGSISKQDLRTFLRWA 554 (733)
Q Consensus 497 A~~~~~~~~~~g~~lVlgT~N~sE~~~G-----y~T~~g-----d~------------~~~i~Pi~~l~K~~vr~l~~~~ 554 (733)
|.. .. +.-.++|||+.....+ |.-+-| |+ +..+.|||+++|++||++
T Consensus 111 a~~------~~-g~d~iATGHYAri~~~~~~~~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~i---- 179 (356)
T PF03054_consen 111 ADE------GL-GADYIATGHYARIEKDEKNGRYRLLRGADPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVREI---- 179 (356)
T ss_dssp HHT------TT-T-SEEE---SEEEEEES-TTEEEEEE-SSTTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHHH----
T ss_pred HHh------hc-CCCeeccceeEEEEeeccCCceEEEecCCCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHHH----
Confidence 432 01 3456899998643322 111111 22 346889999999999999
Q ss_pred HhhcCCccchhhhcCCCCcccccc
Q 004727 555 ATHLGYSSLAEIEAAPPTAELEPI 578 (733)
Q Consensus 555 ~~~~g~p~l~~i~~~~psaeL~p~ 578 (733)
|+++|++ +.+++-|.++|=+
T Consensus 180 A~~~gl~----~a~k~eSq~iCFi 199 (356)
T PF03054_consen 180 AREAGLP----VAEKKESQGICFI 199 (356)
T ss_dssp HHHCT-T----TTT-----SSTTT
T ss_pred HHhcCCc----ccCccccceEEEe
Confidence 5678999 8999999999864
No 57
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.62 E-value=1.5e-15 Score=159.23 Aligned_cols=186 Identities=26% Similarity=0.332 Sum_probs=127.7
Q ss_pred hhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeee
Q 004727 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (733)
Q Consensus 338 ~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~ 417 (733)
-|.++|++. ++++|++|||+||+++++++ .+. |.+ +.+++
T Consensus 4 ~l~~~l~~~--~~vlVa~SGGvDSs~ll~la-------~~~---g~~----------------------------v~av~ 43 (252)
T TIGR00268 4 NLRNFLKEF--KKVLIAYSGGVDSSLLAAVC-------SDA---GTE----------------------------VLAIT 43 (252)
T ss_pred HHHHHHHhc--CCEEEEecCcHHHHHHHHHH-------HHh---CCC----------------------------EEEEE
Confidence 467788874 67999999999999998886 232 322 46888
Q ss_pred ccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHH
Q 004727 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLA 497 (733)
Q Consensus 418 m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A 497 (733)
+.+...+..+.+.|+++|+.+|++|++++++++... +.. ..+ +++. .-.|.++..++.+|
T Consensus 44 ~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~----~~~---n~~--------~~c~-----~ck~~~~~~l~~~A 103 (252)
T TIGR00268 44 VVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMINP----FRA---NVE--------ERCY-----FCKKMVLSILVKEA 103 (252)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHHHH----HHh---CCC--------cccc-----hhhHHHHHHHHHHH
Confidence 877666778899999999999999999999864322 211 111 1122 22233455566666
Q ss_pred hhcccccCCCcEEEEeccCcccccc---ccccccccCCCCCCCCCC--CCcHHhHHHHHHHHHhhcCCccchhhhcCCCC
Q 004727 498 SLLPWVHNKPGFYLVLGSSNVDEGL---RGYLTKYDCSSADINPIG--SISKQDLRTFLRWAATHLGYSSLAEIEAAPPT 572 (733)
Q Consensus 498 ~~~~~~~~~~g~~lVlgT~N~sE~~---~Gy~T~~gd~~~~i~Pi~--~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~ps 572 (733)
+.+ +...++.| .|.++.. .|+.+..++ +.+.|+. +++|.||+++ ++++|+| ++++|++
T Consensus 104 ~~~------g~~~I~~G-~n~dD~~~~rpg~~a~~~~--~~~~PL~~~~l~K~eIr~l----a~~~gl~----~~~~ps~ 166 (252)
T TIGR00268 104 EKR------GYDVVVDG-TNADDLFDHRPGYRAVKEF--NGVSPWAEFGITKKEIREI----AKSLGIS----FPDKPSE 166 (252)
T ss_pred HHc------CCCEEEEC-CCCcccccccHHHHHHHHc--CCCCcchhcCCCHHHHHHH----HHHcCCC----ccCCCCC
Confidence 543 11233333 3666543 566555443 4569996 5899999999 5679999 8899999
Q ss_pred ccccccccccc-ccccccccCChhhhhhhcc
Q 004727 573 AELEPIRSNYS-QLDEVDMGMTYEELSVYGR 602 (733)
Q Consensus 573 aeL~p~~~~~~-Q~DE~~lG~~Y~~l~~~~~ 602 (733)
+||.. +.+++ +.|++.|+| ++..+.|++
T Consensus 167 ~Cl~s-r~~~g~~it~~~l~~-v~~~E~~l~ 195 (252)
T TIGR00268 167 ACLAS-RFPFGREIDEEKLKM-VDEAEEVLR 195 (252)
T ss_pred CceEe-ecCCCCcCCHHHHHH-HHHHHHHHH
Confidence 99976 34455 568888887 887777765
No 58
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=5e-16 Score=177.06 Aligned_cols=230 Identities=20% Similarity=0.141 Sum_probs=150.7
Q ss_pred eeceecccccccc---ccccc---chhhHHHHHHHHH--HcCceeeeCcceeecccccccccccccchhhhHHHHHHHhc
Q 004727 3 LLKVATCNLNNWA---LDFDC---NLKNIKESIGRAK--EAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLL 74 (733)
Q Consensus 3 ~~kVA~~Qln~~~---~D~e~---N~~ri~~~I~~A~--~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~ 74 (733)
.++|+++|.|... .|.++ +...+.+....+. .+.+|+||+||.+++ +...++ ... +.++.+
T Consensus 227 ~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p-~~~~~~------~~~----~~~~~~ 295 (518)
T COG0815 227 TLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALP-FDLTRH------PDA----LARLAE 295 (518)
T ss_pred ceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccc-cchhhc------chH----HHHHHH
Confidence 4899999999752 23222 1222222222222 378999999999987 222221 111 222333
Q ss_pred cCCCCceeeecCccee--eCce--eeeeEEEEe-cceEEEEecceeeccCCCceeeeccccccccccccccCCchHHHHH
Q 004727 75 GDWTDGILCSFGMPVI--KGSE--RYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVA 149 (733)
Q Consensus 75 ~~~~~~i~iivG~p~~--~~g~--lYN~a~vi~-~G~Il~~~~K~~Lp~~g~f~E~r~F~~g~~~~~~e~~~lp~~i~~~ 149 (733)
...+.+..+++|+... .++. +||++++++ +|+++.+|+|.||-++|||-.-..+-++... .+.+|
T Consensus 296 ~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~----~~~~~------ 365 (518)
T COG0815 296 ALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYF----FLNLP------ 365 (518)
T ss_pred HHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhh----hhccc------
Confidence 2234677889994432 2344 899999998 5599999999999999987554333221111 11111
Q ss_pred hcCccccc--c--cceeeee-hhhHHHHHhhhhcCCCCCcccccccceEEEecCCCchhhhhh---hhHHHHHHhhhccc
Q 004727 150 LKQKSVPF--G--YGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRK---LDYRIRAFISATHS 221 (733)
Q Consensus 150 ~~~~~vpf--G--~~vf~~~-~~riGv~ICeDlw~p~~~~~~la~~GadiIlnpSas~~~~gk---~~~r~~li~~~A~~ 221 (733)
..+| | ..++.+. +.||++.||||.-||+. .|....+|||+|+|+|+..| +++ ..++..+.+.||.|
T Consensus 366 ----~~~f~~G~~~~v~~~~~~~~~~~~ICYE~~F~~~-~r~~~~qga~~Lin~SNDAW-f~~s~~p~QH~~~a~~RAiE 439 (518)
T COG0815 366 ----MSDFSRGPGPQVLLLAGGPKIAPLICYEAIFPEL-VRASARQGAELLLNLSNDAW-FGGSWGPYQHFQQARVRAVE 439 (518)
T ss_pred ----cccccCCCCCcceecCCCceeeceeeehhhchHH-HHHhhcCCCcEEEEcccccc-cCCCcchHHHHHHHHHHHHh
Confidence 1122 2 2344444 46799999999999964 67888899999999998765 222 23455667899999
Q ss_pred cceEEEeecCCCCCCceeeecceeEEE-EcCeEeeecccccccceEEEEEEe
Q 004727 222 RGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQV 272 (733)
Q Consensus 222 ~g~~~vyaN~~G~~~~~~~fdG~S~I~-p~G~vla~~~~f~~~~~~vv~a~v 272 (733)
++.+++-|.+.|.+ .|+ |.|+++++.+.|+. +++.++|
T Consensus 440 ~grp~iRAtNtGiS----------avIdp~Gri~~~l~~~~~---~~l~~~v 478 (518)
T COG0815 440 LGRPLVRATNTGIS----------AVIDPRGRILAQLPYFTR---GVLDATV 478 (518)
T ss_pred cCCcEEEEcCCcce----------EEECCCCCEEeecCCCCc---ceeeeee
Confidence 99999999988754 666 99999999999865 4555544
No 59
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.62 E-value=9.7e-16 Score=155.01 Aligned_cols=177 Identities=22% Similarity=0.270 Sum_probs=124.1
Q ss_pred hhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeec
Q 004727 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (733)
Q Consensus 339 L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m 418 (733)
|+.|++..+ +++|++|||+|||++|.++ .+++| ++ +.+|+.
T Consensus 10 l~~~ik~~~--kv~vAfSGGvDSslLa~la-------~~~lG---~~---------------------------v~AvTv 50 (269)
T COG1606 10 LKKAIKEKK--KVVVAFSGGVDSSLLAKLA-------KEALG---DN---------------------------VVAVTV 50 (269)
T ss_pred HHHHHhhcC--eEEEEecCCccHHHHHHHH-------HHHhc---cc---------------------------eEEEEE
Confidence 667777654 9999999999999999887 67774 33 367888
Q ss_pred cCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHh
Q 004727 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLAS 498 (733)
Q Consensus 419 ~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~ 498 (733)
.+...+...++.|+.+|+.+|+.|..|+++.+- |.|.. ...+++.+|.. + .--.+
T Consensus 51 ~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~--------------~~~~~-n~~~rCY~CK~---~--v~~~l----- 105 (269)
T COG1606 51 DSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD--------------PEFKE-NPENRCYLCKR---A--VYSTL----- 105 (269)
T ss_pred ecCCCChhhhhHHHHHHHHhCCcceeeehhhcc--------------hhhcc-CCCCcchHHHH---H--HHHHH-----
Confidence 888889999999999999999999999997531 22211 01123444331 1 11112
Q ss_pred hcccccCCCcEEEEeccCcccc---ccccccccccCCCCCCCCC--CCCcHHhHHHHHHHHHhhcCCccchhhhcCCCCc
Q 004727 499 LLPWVHNKPGFYLVLGSSNVDE---GLRGYLTKYDCSSADINPI--GSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTA 573 (733)
Q Consensus 499 ~~~~~~~~~g~~lVlgT~N~sE---~~~Gy~T~~gd~~~~i~Pi--~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~psa 573 (733)
..++.++ |.-.|+...|.|+ ...||...+-. +.-+|+ .+|+|.+|+++ ++.+|++ ++++|+.|
T Consensus 106 -~~~a~~~-Gyd~V~dGtNasDl~~~RPG~rA~kE~--gi~sPl~e~gitk~eIre~----a~~lgl~----~~~kp~~a 173 (269)
T COG1606 106 -VEEAEKR-GYDVVADGTNASDLFDYRPGLRALKEL--GIRSPLAEFGITKKEIREI----AKSLGLP----TWDKPSMA 173 (269)
T ss_pred -HHHHHHc-CCCEEEeCCcHHHhcCCCcchhhHHhc--CCCChHHHhCCcHHHHHHH----HHHcCCC----cccCcccc
Confidence 2233332 4457777778876 45566665544 466888 78999999999 5669999 99999999
Q ss_pred cccccccccccc-ccccccC
Q 004727 574 ELEPIRSNYSQL-DEVDMGM 592 (733)
Q Consensus 574 eL~p~~~~~~Q~-DE~~lG~ 592 (733)
||.. ..++++. ++++++|
T Consensus 174 Cl~s-r~p~g~ei~~e~l~k 192 (269)
T COG1606 174 CLAS-RIPYGEEITVEDLKK 192 (269)
T ss_pred cccc-ccCCCccccHHHHHH
Confidence 9976 4456654 6666654
No 60
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1e-14 Score=156.22 Aligned_cols=166 Identities=21% Similarity=0.229 Sum_probs=119.2
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCc------
Q 004727 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE------ 421 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~------ 421 (733)
..+++|+||||+||||+|+|+ .++ |.+ |.+++|-..
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lL-------k~Q---Gye----------------------------ViGl~m~~~~~~~~~ 44 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLL-------KEQ---GYE----------------------------VIGLFMKNWDEDGGG 44 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHH-------HHc---CCe----------------------------EEEEEEEeeccCCCC
Confidence 468999999999999999997 333 666 568887532
Q ss_pred -CChHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhh
Q 004727 422 -NSSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASL 499 (733)
Q Consensus 422 -~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~ 499 (733)
+++.++..+|+.+|+.|||+|+++|+.+.+.. +...|-+. |+ .|.+++++.++|-.-.++..+-|+..
T Consensus 45 ~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~------Y~--~G~TPNPci~CN~~iKF~~~l~~a~~-- 114 (356)
T COG0482 45 GCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAE------YK--AGKTPNPCILCNKEIKFKALLDYAKE-- 114 (356)
T ss_pred cCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHH------Hh--CCCCCCcchhcCHHHHHHHHHHHHHH--
Confidence 46889999999999999999999999987764 33344332 11 23445788899988888876666554
Q ss_pred cccccCCCcEEEEeccCccccccc---ccccccc-----CCC------------CCCCCCCCCcHHhHHHHHHHHHhhcC
Q 004727 500 LPWVHNKPGFYLVLGSSNVDEGLR---GYLTKYD-----CSS------------ADINPIGSISKQDLRTFLRWAATHLG 559 (733)
Q Consensus 500 ~~~~~~~~g~~lVlgT~N~sE~~~---Gy~T~~g-----d~~------------~~i~Pi~~l~K~~vr~l~~~~~~~~g 559 (733)
+ |.-.+.||++.-... .+.-..+ |.+ ..+.|+|++.|.+||++ |++.|
T Consensus 115 l--------gad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~~ql~~~lFPlG~l~K~evR~i----A~~~g 182 (356)
T COG0482 115 L--------GADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQEQLERLLFPLGDLEKLEVRPI----AAEKG 182 (356)
T ss_pred c--------CCCeEEEeeeEeeecCCcccccccCCCcccchhheecccCHHHHhhccccCCCCCHHHHHHH----HHHcC
Confidence 2 345678888653221 1111111 333 35899999999999999 55688
Q ss_pred CccchhhhcCCCCccccc
Q 004727 560 YSSLAEIEAAPPTAELEP 577 (733)
Q Consensus 560 ~p~l~~i~~~~psaeL~p 577 (733)
++ +.+|+-|.+++=
T Consensus 183 L~----~a~KkdS~~ICF 196 (356)
T COG0482 183 LP----TAKKKDSQGICF 196 (356)
T ss_pred CC----ccCcccCCccee
Confidence 88 888888888875
No 61
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.42 E-value=6.2e-13 Score=145.51 Aligned_cols=165 Identities=21% Similarity=0.262 Sum_probs=110.9
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcC--ChHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQE 426 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~--ss~~ 426 (733)
.+++|+||||+||+++|+|+ .+. |.+ +++++|.... .+.+
T Consensus 6 ~kVlValSGGVDSsvaa~LL-------~~~---G~~----------------------------V~~v~~~~~~~~~~~~ 47 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLL-------LEA---GYE----------------------------VTGVTFRFYEFNGSTE 47 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHH-------HHc---CCe----------------------------EEEEEEecCCCCCChH
Confidence 58999999999999999886 222 443 5788886432 3567
Q ss_pred HHHHHHHHHHHhcccccccchhHHHHH-HHHHHHhh--hCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccc
Q 004727 427 TRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTL--TGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWV 503 (733)
Q Consensus 427 t~~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~~~~--~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~ 503 (733)
+.++|+++|+.||++|+++|+++.+.. +.+.|.+. .|.+ +.++..+|-..|.. .++.+|..+
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~t----------pnpC~~Cnr~ikf~--~l~~~A~~~--- 112 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHT----------PVPCTLCNNYLKWP--LLAKIADEM--- 112 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCC----------CCHHHHHHHHHHHH--HHHHHHHHc---
Confidence 799999999999999999999876543 22222221 1333 35677777665554 345556433
Q ss_pred cCCCcEEEEeccCccccc--ccc-cccccc-----CC------------CCCCCCCCCCcHHhHHHHHHHHHhhcCCccc
Q 004727 504 HNKPGFYLVLGSSNVDEG--LRG-YLTKYD-----CS------------SADINPIGSISKQDLRTFLRWAATHLGYSSL 563 (733)
Q Consensus 504 ~~~~g~~lVlgT~N~sE~--~~G-y~T~~g-----d~------------~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l 563 (733)
|.-++.||+.... .-| |....| |+ +..+.||++++|.|||++ ++++|++
T Consensus 113 -----G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~l~~~~l~~~ifPLg~~~K~eVr~~----A~~~gl~-- 181 (360)
T PRK14665 113 -----GIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKSEARAY----AAERGFE-- 181 (360)
T ss_pred -----CCCEEEECCccceeccCCcEEEEeecCCCCCceEEecCCCHHHHhheeccCcCCCHHHHHHH----HHHCCCC--
Confidence 3456788877521 112 222222 22 235899999999999999 5668863
Q ss_pred hhhhcCCCCcccccc
Q 004727 564 AEIEAAPPTAELEPI 578 (733)
Q Consensus 564 ~~i~~~~psaeL~p~ 578 (733)
.+.+|+.|.++|-.
T Consensus 182 -~~a~k~eSq~iCF~ 195 (360)
T PRK14665 182 -KVAKKRDSLGVCFC 195 (360)
T ss_pred -ccCcCCCCCccccC
Confidence 27889999998874
No 62
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.40 E-value=1e-12 Score=141.39 Aligned_cols=172 Identities=23% Similarity=0.295 Sum_probs=110.8
Q ss_pred hhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheee
Q 004727 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (733)
Q Consensus 337 ~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v 416 (733)
..|++.+.. ++++|++|||+||+++|+++ .+++ |.+ ++++
T Consensus 8 ~~l~~~v~~---~kVvValSGGVDSsvla~ll-------~~~~--G~~----------------------------v~av 47 (311)
T TIGR00884 8 EEIREQVGD---AKVIIALSGGVDSSVAAVLA-------HRAI--GDR----------------------------LTCV 47 (311)
T ss_pred HHHHHHhCC---CcEEEEecCChHHHHHHHHH-------HHHh--CCC----------------------------EEEE
Confidence 445666643 78999999999999999887 4555 322 5889
Q ss_pred eccCcCChHHHHHHHHHH-HHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHH
Q 004727 417 FMGSENSSQETRMLAKKL-ADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFM 495 (733)
Q Consensus 417 ~m~~~~ss~~t~~~A~~l-A~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~ 495 (733)
++.+......+.++++++ ++.+|++|+++++++.+ .+.+... ..| +. .+.+-.|.+.-++..
T Consensus 48 ~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~f---l~~l~~v--~~p----------~~--~r~~~~~~~~~~~~~ 110 (311)
T TIGR00884 48 FVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERF---LSALKGV--TDP----------EE--KRKIIGRVFIEVFER 110 (311)
T ss_pred EEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHH---HhhhcCC--CCh----------HH--HHHHHHHHHHHHHHH
Confidence 988766555667777665 55899999999998643 2222221 011 11 223333444444555
Q ss_pred HHhhcccccCCC-cEEEEeccC--ccccccccc------------cccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCC
Q 004727 496 LASLLPWVHNKP-GFYLVLGSS--NVDEGLRGY------------LTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY 560 (733)
Q Consensus 496 ~A~~~~~~~~~~-g~~lVlgT~--N~sE~~~Gy------------~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~ 560 (733)
+|+.+ + ...++.||. +..|...|= .+.. ...+.+.||.+++|.|||++ ++.+|+
T Consensus 111 ~A~~~------g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~~~-~~~~ii~PL~~l~K~EVr~l----a~~lgL 179 (311)
T TIGR00884 111 EAKKI------GDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLPED-MKLKLVEPLRELFKDEVRKL----GKELGL 179 (311)
T ss_pred HHHHC------CCCCEEEECCCChhhhhhccChhHhhhccCccccCChh-hcCceEEEcccCcHHHHHHH----HHHcCC
Confidence 55443 2 235777763 333444331 1111 12458999999999999999 567898
Q ss_pred ccchhhhcCC-CCccccc
Q 004727 561 SSLAEIEAAP-PTAELEP 577 (733)
Q Consensus 561 p~l~~i~~~~-psaeL~p 577 (733)
|. +-++++| |.|||..
T Consensus 180 p~-~~~~~~Pf~~p~La~ 196 (311)
T TIGR00884 180 PE-EIVWRHPFPGPGLAV 196 (311)
T ss_pred CH-HHhhCCCCCCCceEe
Confidence 72 5577889 9999986
No 63
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.2e-12 Score=135.08 Aligned_cols=164 Identities=18% Similarity=0.271 Sum_probs=113.2
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeecc--------
Q 004727 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-------- 419 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~-------- 419 (733)
..+|||+||||+|||+.|.|++ .+ |.. +.+|+|-
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~-------~~---g~~----------------------------v~gv~M~nWd~~de~ 46 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLA-------AR---GYN----------------------------VTGVFMKNWDSLDEF 46 (377)
T ss_pred cceEEEEecCCchHHHHHHHHH-------hc---CCC----------------------------eeEEeeecccccccc
Confidence 4679999999999999998872 22 444 5788883
Q ss_pred -CcCChHHHHHHHHHHHHHhcccccccchhHHHHH-----HHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHH
Q 004727 420 -SENSSQETRMLAKKLADEIGSWHLDVSIDTVVSA-----FLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLA 493 (733)
Q Consensus 420 -~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~-----~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~ 493 (733)
+..+-+.+..+|+.+|++|+|+++.++....+.. +++..+ -|++| ++-.++|-+-+......
T Consensus 47 ~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~--~G~TP----------NPDI~CN~~IKFg~~~~ 114 (377)
T KOG2805|consen 47 GSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYE--NGRTP----------NPDILCNKHIKFGKFFK 114 (377)
T ss_pred ccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHh--cCCCC----------CCCccccceeeccHHHH
Confidence 3556678999999999999999999998764432 222222 25555 33446666655544333
Q ss_pred HHHHhhcccccCCCcEEEEeccCccccccccccccc-----------cCC------------CCCCCCCCCCcHHhHHHH
Q 004727 494 FMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKY-----------DCS------------SADINPIGSISKQDLRTF 550 (733)
Q Consensus 494 ~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~~-----------gd~------------~~~i~Pi~~l~K~~vr~l 550 (733)
++.-+ -| +-.|+||++....++-.+.. -|. ...+.||+.+.|.+||.+
T Consensus 115 ~a~en--------~~-~d~latGHYAr~~~~~~~~~~~~l~~~~d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~l 185 (377)
T KOG2805|consen 115 HAIEN--------LG-YDWLATGHYARVVLEDEDNAESHLLISKDMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKL 185 (377)
T ss_pred HHHHh--------cC-CCeEEeeeeeeeecCcccCcceeEeecccccCCceeEeecccHHHHHhhhccCcccCHHHHHHH
Confidence 33332 22 34789999875554433310 011 235789999999999999
Q ss_pred HHHHHhhcCCccchhhhcCCCCcccccc
Q 004727 551 LRWAATHLGYSSLAEIEAAPPTAELEPI 578 (733)
Q Consensus 551 ~~~~~~~~g~p~l~~i~~~~psaeL~p~ 578 (733)
|++.|+| +.+||-|.+++=.
T Consensus 186 ----A~~~gf~----~aeK~eSqGICFv 205 (377)
T KOG2805|consen 186 ----AKQAGFP----NAEKPESQGICFV 205 (377)
T ss_pred ----HHhcCCc----cccCcccceeEEe
Confidence 5668988 8999999999864
No 64
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.38 E-value=1.6e-12 Score=141.99 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=110.7
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|++|||+||+++|+++ +.. |.+ +++++|... .++.
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL--------~~~--G~e----------------------------V~av~~~~~---~~e~ 44 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLML--------QEQ--GYE----------------------------IVGVTMRVW---GDEP 44 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHH--------HHc--CCc----------------------------EEEEEecCc---chhH
Confidence 68999999999999988875 222 443 578888653 2345
Q ss_pred HHHHHHHHHhcccccccchhHHHHH-HHHHHHh--hhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccC
Q 004727 429 MLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHN 505 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~~~--~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~ 505 (733)
++|+++|+.+|++|+++|+++.+.. +...+.+ ..|++| .++..+|-..|.+. ++.+|..+
T Consensus 45 ~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G~tp----------npC~~Cn~~iKf~~--L~~~A~~~----- 107 (362)
T PRK14664 45 QDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTP----------NPCVMCNPLFKFRM--LIEWADKL----- 107 (362)
T ss_pred HHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcCCCC----------CCchhhhHHHHHHH--HHHHHHHc-----
Confidence 7899999999999999999875542 3322222 224444 56788887766653 44455433
Q ss_pred CCcEEEEeccCccccccc--c-cccccc-----CCC------------CCCCCCCCCcHHhHHHHHHHHHhhcCCccchh
Q 004727 506 KPGFYLVLGSSNVDEGLR--G-YLTKYD-----CSS------------ADINPIGSISKQDLRTFLRWAATHLGYSSLAE 565 (733)
Q Consensus 506 ~~g~~lVlgT~N~sE~~~--G-y~T~~g-----d~~------------~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~ 565 (733)
|.-++.|||...... | |.-..| |.+ ..+.||++++|+|||++ +++.|++
T Consensus 108 ---G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ifPLg~~~K~evr~~----A~~~gl~---- 176 (362)
T PRK14664 108 ---GCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDILRRCIFPLGNYTKQTVREY----LREKGYE---- 176 (362)
T ss_pred ---CCCEEEECCccccccCCCeEEEEEcCCCcchHHHHHHhcCHHHHhHHhccCccCCHHHHHHH----HHHcCCC----
Confidence 346789999874211 2 111112 122 36899999999999999 5668888
Q ss_pred h-hcCCCCcccccc
Q 004727 566 I-EAAPPTAELEPI 578 (733)
Q Consensus 566 i-~~~~psaeL~p~ 578 (733)
+ .+|+-|.++|=+
T Consensus 177 ~~a~k~dSq~iCFi 190 (362)
T PRK14664 177 AKSKEGESMEVCFI 190 (362)
T ss_pred CCCCCCCCCcceee
Confidence 5 789999999874
No 65
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.36 E-value=2.9e-12 Score=140.41 Aligned_cols=163 Identities=24% Similarity=0.260 Sum_probs=106.7
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCc--------
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-------- 421 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~-------- 421 (733)
+++|+||||+||+++|+++ .+ . |.+ +++++|...
T Consensus 1 kVlValSGGvDSsvla~lL-------~~-~--g~~----------------------------v~~v~i~~~~~~~~~~~ 42 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALL-------KE-Q--GYE----------------------------VIGVFMKNWDEDDGKGG 42 (349)
T ss_pred CEEEEecCCHHHHHHHHHH-------HH-c--CCc----------------------------EEEEEEecccccccccC
Confidence 4789999999999988886 22 2 333 467777432
Q ss_pred CChHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHh--hhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHh
Q 004727 422 NSSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLAS 498 (733)
Q Consensus 422 ~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~~~--~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~ 498 (733)
..+..+.++|+++|+.+|++|+++++++.+.. +...+.+ ..|.+ +.++..+|..-|.+. +..+|.
T Consensus 43 ~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~i~~~~~g~t----------pnpc~~C~r~ikf~~--l~~~A~ 110 (349)
T cd01998 43 CCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRT----------PNPDILCNKEIKFGA--LLDYAK 110 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHHHHHHHcCCC----------CCchHhhhhHHHHHH--HHHHHH
Confidence 23567889999999999999999999865432 2222222 12333 356677776655554 334454
Q ss_pred hcccccCCCcEEEEeccCccccccc---c-ccccc-----cCC------------CCCCCCCCCCcHHhHHHHHHHHHhh
Q 004727 499 LLPWVHNKPGFYLVLGSSNVDEGLR---G-YLTKY-----DCS------------SADINPIGSISKQDLRTFLRWAATH 557 (733)
Q Consensus 499 ~~~~~~~~~g~~lVlgT~N~sE~~~---G-y~T~~-----gd~------------~~~i~Pi~~l~K~~vr~l~~~~~~~ 557 (733)
.+ +.-++.||+...... + +.-+. +|. ...+.||++++|+|||++ +++
T Consensus 111 ~~--------g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~l~~ii~PL~~~~K~eVr~~----A~~ 178 (349)
T cd01998 111 KL--------GADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVREI----AKE 178 (349)
T ss_pred Hc--------CcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHHHHhheeecCCCCCHHHHHHH----HHH
Confidence 33 334566665543111 1 11111 122 357999999999999999 566
Q ss_pred cCCccchhhhcCCCCcccccc
Q 004727 558 LGYSSLAEIEAAPPTAELEPI 578 (733)
Q Consensus 558 ~g~p~l~~i~~~~psaeL~p~ 578 (733)
+|+| ++++|.|.++|=.
T Consensus 179 ~gl~----~~~k~~s~~iCFi 195 (349)
T cd01998 179 LGLP----VAKKKDSQGICFI 195 (349)
T ss_pred cCCC----CCCCCCCCceEEe
Confidence 8998 8999999999864
No 66
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.35 E-value=3.4e-12 Score=139.68 Aligned_cols=163 Identities=23% Similarity=0.291 Sum_probs=107.4
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCc--------
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-------- 421 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~-------- 421 (733)
+++|+||||+||+++|+++ .+ . |.+ +.+++|...
T Consensus 2 kVlValSGGvDSsvla~lL-------~~-~--G~~----------------------------V~~v~~~~~~~~~~~~~ 43 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALL-------KE-Q--GYE----------------------------VIGVFMKLWDDDDETGK 43 (346)
T ss_pred eEEEEecCCHHHHHHHHHH-------HH-c--CCc----------------------------EEEEEEeCCCccccccc
Confidence 6899999999999988876 22 2 333 356666532
Q ss_pred --CChHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHh--hhCCCCceeecCCccccccchhhHHHHHHHHHHHHH
Q 004727 422 --NSSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFML 496 (733)
Q Consensus 422 --~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~~~--~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~ 496 (733)
..+.++.++|+++|+.+|++|+++++++.+.. +.+.+.+ ..|.+ +.++..+|...|.+. +...
T Consensus 44 ~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~~~~~~~~~g~t----------pnpc~~C~r~ik~~~--l~~~ 111 (346)
T PRK00143 44 GGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVIDYFLDEYKAGRT----------PNPCVLCNKEIKFKA--FLEY 111 (346)
T ss_pred CCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHHHHHcCCC----------CCcChhhhHHHHHHH--HHHH
Confidence 13577889999999999999999999875532 2222221 12333 366778887666554 4445
Q ss_pred HhhcccccCCCcEEEEeccCcccc------cccc--------cc---ccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcC
Q 004727 497 ASLLPWVHNKPGFYLVLGSSNVDE------GLRG--------YL---TKYDCSSADINPIGSISKQDLRTFLRWAATHLG 559 (733)
Q Consensus 497 A~~~~~~~~~~g~~lVlgT~N~sE------~~~G--------y~---T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g 559 (733)
|..+ +.-++.||+... +.+| |+ .........+.||++++|.|||++ ++++|
T Consensus 112 A~~~--------g~~~IATGH~a~d~~~~~L~rg~d~~kDqsy~l~~l~~~~l~~~i~PL~~~~K~eVr~~----A~~~g 179 (346)
T PRK00143 112 AREL--------GADYIATGHYARIRDGRELLRGVDPNKDQSYFLYQLTQEQLAKLLFPLGELTKPEVREI----AEEAG 179 (346)
T ss_pred HHHC--------CCCEEEeeeeccccccceEEEccCCCcChhhhhccCCHHHhcceeccCccCCHHHHHHH----HHHcC
Confidence 5433 234466665431 1222 22 111122357999999999999999 56689
Q ss_pred CccchhhhcCCCCcccccc
Q 004727 560 YSSLAEIEAAPPTAELEPI 578 (733)
Q Consensus 560 ~p~l~~i~~~~psaeL~p~ 578 (733)
+| ++++|-|.+++-.
T Consensus 180 l~----~~~k~~s~~icf~ 194 (346)
T PRK00143 180 LP----VAKKKDSQGICFI 194 (346)
T ss_pred CC----cCCCCCCCcccCC
Confidence 98 8999999887753
No 67
>PLN02347 GMP synthetase
Probab=99.35 E-value=3.3e-12 Score=146.32 Aligned_cols=177 Identities=22% Similarity=0.232 Sum_probs=107.7
Q ss_pred hhhHHhhhcC-CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheee
Q 004727 338 WLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (733)
Q Consensus 338 ~L~dyl~~sg-~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v 416 (733)
++.+..++.+ .++++|+||||+|||++|+|+ .+++| . + ++++
T Consensus 218 ~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~-------~~alG--~-~---------------------------v~av 260 (536)
T PLN02347 218 QIELIKATVGPDEHVICALSGGVDSTVAATLV-------HKAIG--D-R---------------------------LHCV 260 (536)
T ss_pred HHHHHHHHhccCCeEEEEecCChhHHHHHHHH-------HHHhC--C-c---------------------------EEEE
Confidence 4455555556 456999999999999999997 56663 2 2 5899
Q ss_pred eccCcCChHHHHHHH-HHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchh---hHHHHHHHHH
Q 004727 417 FMGSENSSQETRMLA-KKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ---NIQARIRMVL 492 (733)
Q Consensus 417 ~m~~~~ss~~t~~~A-~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~---NiqaR~R~~~ 492 (733)
++++...+..+.++| +.+|+.+|++|.++|+++. +++.++.++ +|. +.+.++-. .+-.++
T Consensus 261 ~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~---fl~~l~~~~--~pe-------~k~~~~~~~f~~~f~~~---- 324 (536)
T PLN02347 261 FVDNGLLRYKEQERVMETFKRDLHLPVTCVDASER---FLSKLKGVT--DPE-------KKRKIIGAEFIEVFDEF---- 324 (536)
T ss_pred EEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHH---HHhhCCCCC--ChH-------HhcchhCchHHHHHHHH----
Confidence 998765544444555 8899999999999999953 444455443 221 12223322 222211
Q ss_pred HHHHHhhcccccCCCcEEEEecc--Cccccc--cccc--------cc-------cccCCCCCCCCCCCCcHHhHHHHHHH
Q 004727 493 AFMLASLLPWVHNKPGFYLVLGS--SNVDEG--LRGY--------LT-------KYDCSSADINPIGSISKQDLRTFLRW 553 (733)
Q Consensus 493 ~~~~A~~~~~~~~~~g~~lVlgT--~N~sE~--~~Gy--------~T-------~~gd~~~~i~Pi~~l~K~~vr~l~~~ 553 (733)
.-.++..+ +.....|+-|| .+..|. ..|. .| ......+.+.||++++|+|||++
T Consensus 325 ~~~~~~~~----~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL~~l~K~eVR~l--- 397 (536)
T PLN02347 325 AHKLEQKL----GKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKL--- 397 (536)
T ss_pred HHHHHHhh----CCCCcEEccCCcccccccccCCCCCccccccceeeecccccChHHHHCccccchhhCcHHHHHHH---
Confidence 11122111 11113355565 333342 2332 01 12234678999999999999999
Q ss_pred HHhhcCCccchhhhc-C-CCCccccc
Q 004727 554 AATHLGYSSLAEIEA-A-PPTAELEP 577 (733)
Q Consensus 554 ~~~~~g~p~l~~i~~-~-~psaeL~p 577 (733)
++++|+| ++|+. + +|.|||..
T Consensus 398 -a~~lgl~--~~~~~~~p~p~p~La~ 420 (536)
T PLN02347 398 -GRLLGVP--EAFLKRHPFPGPGLAV 420 (536)
T ss_pred -HHHcCCC--HHHhcCCCcCCCCEEe
Confidence 5668987 65554 4 56799985
No 68
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.33 E-value=6.6e-12 Score=133.96 Aligned_cols=163 Identities=25% Similarity=0.305 Sum_probs=103.9
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
+++|++|||+||+++|+++ .+++ |.+ ++++++.+......+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll-------~~~l--G~~----------------------------v~aV~vd~g~~~~~E~~ 43 (295)
T cd01997 1 KVILALSGGVDSTVAAVLL-------HKAI--GDR----------------------------LTCVFVDNGLLRKNEAE 43 (295)
T ss_pred CEEEEEcCChHHHHHHHHH-------HHHh--CCc----------------------------EEEEEecCCCCChHHHH
Confidence 4799999999999999987 4555 332 47888887665667889
Q ss_pred HHHHHHHHhcc-cccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCC-
Q 004727 430 LAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP- 507 (733)
Q Consensus 430 ~A~~lA~~lGi-~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~- 507 (733)
.++++|+.+|+ +|+.+++++.+ .+.+.... .| +. ..-+-.|.+.-.+..+|+.+ +
T Consensus 44 ~~~~~~~~~g~i~~~vvd~~e~f---l~~l~~v~--np----------e~--rr~~~g~~~~~~l~~~A~~~------g~ 100 (295)
T cd01997 44 RVEELFSKLLGINLIVVDASERF---LSALKGVT--DP----------EE--KRKIIGETFIEVFEEEAKKL------GL 100 (295)
T ss_pred HHHHHHHHhCCCcEEEEcCcHHH---HHHhcCCC--CH----------HH--HHHHhhHHHHHHHHHHHHHc------CC
Confidence 99999999987 99999998532 22222110 01 11 11122233444455555543 2
Q ss_pred cEEEEecc--Ccccccccccc------ccc---c----CCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCC-C
Q 004727 508 GFYLVLGS--SNVDEGLRGYL------TKY---D----CSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAP-P 571 (733)
Q Consensus 508 g~~lVlgT--~N~sE~~~Gy~------T~~---g----d~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~-p 571 (733)
...++.|| .+..|....-. +.. | ...+.+.||.+++|.|||++ ++.+|+|. +-++++| |
T Consensus 101 ~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~PL~~l~K~EVR~l----ar~lGLp~-~~~~~~Pfp 175 (295)
T cd01997 101 AEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEPLRDLFKDEVREL----GRELGLPE-EIVERHPFP 175 (295)
T ss_pred CCEEEECCcccchhhhcccccccccccccccccccchHhhCCcccccccCcHHHHHHH----HHHcCCCc-hhhCCCCCC
Confidence 23465665 22334332111 000 1 22457999999999999999 56689882 3458999 9
Q ss_pred Cccccc
Q 004727 572 TAELEP 577 (733)
Q Consensus 572 saeL~p 577 (733)
.|||..
T Consensus 176 ~p~La~ 181 (295)
T cd01997 176 GPGLAV 181 (295)
T ss_pred CCccee
Confidence 999987
No 69
>PRK00919 GMP synthase subunit B; Validated
Probab=99.32 E-value=8.3e-12 Score=133.58 Aligned_cols=172 Identities=21% Similarity=0.229 Sum_probs=111.6
Q ss_pred chhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhhee
Q 004727 336 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (733)
Q Consensus 336 ~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 415 (733)
...|++.+.. ++++|++|||+||+++|+++ .+++ |.+ +++
T Consensus 12 ~~~l~~~~~~---~kVlVa~SGGVDSsvla~la-------~~~l--G~~----------------------------v~a 51 (307)
T PRK00919 12 IEEIREEIGD---GKAIIALSGGVDSSVAAVLA-------HRAI--GDR----------------------------LTP 51 (307)
T ss_pred HHHHHHHhCC---CCEEEEecCCHHHHHHHHHH-------HHHh--CCe----------------------------EEE
Confidence 3446666543 78999999999999999887 4555 332 578
Q ss_pred eeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHH
Q 004727 416 VFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFM 495 (733)
Q Consensus 416 v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~ 495 (733)
+++.+......+.+.|+++|+.+ ++|..+++++.+ .+.+... ..| +. ...+-.|.+.-++..
T Consensus 52 V~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~f---l~~L~~v--~np----------e~--rr~~c~r~~~~~~~~ 113 (307)
T PRK00919 52 VFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRF---LDALKGV--TDP----------EE--KRKIIGETFIRVFEE 113 (307)
T ss_pred EEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHH---HHhccCC--CCh----------HH--hhhHHHHHHHHHHHH
Confidence 88887776778899999999998 999999988633 2222221 111 11 223333444444445
Q ss_pred HHhhcccccCCCcEEEEeccC--cccccccccccc-------ccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhh
Q 004727 496 LASLLPWVHNKPGFYLVLGSS--NVDEGLRGYLTK-------YDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEI 566 (733)
Q Consensus 496 ~A~~~~~~~~~~g~~lVlgT~--N~sE~~~Gy~T~-------~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i 566 (733)
+|+.+ +...++.||. |..|..-|..+. .....+.+.|+.+++|.||+++ ++.+|+| ..+
T Consensus 114 ~A~~~------g~~~Ia~Gtn~dD~iE~r~~iks~~nv~gl~~~~~~~Ii~PL~~l~K~EVr~l----a~~lGLp--~~~ 181 (307)
T PRK00919 114 VAKEI------GAEYLVQGTIAPDWIESEGGIKSHHNVGGLPEGMVLKIVEPLRDLYKDEVREV----ARALGLP--EEI 181 (307)
T ss_pred HHHHc------CCCEEEECCCCcchhhccCcccccccccccChhhcCCcccCchhCcHHHHHHH----HHHcCCC--hhh
Confidence 55443 2245777762 222332222111 1123468999999999999999 5679998 444
Q ss_pred h--cCCCCccccc
Q 004727 567 E--AAPPTAELEP 577 (733)
Q Consensus 567 ~--~~~psaeL~p 577 (733)
+ ++||+|||..
T Consensus 182 ~~r~p~~~pcLa~ 194 (307)
T PRK00919 182 SERMPFPGPGLAV 194 (307)
T ss_pred hCCCCCCCCceeE
Confidence 4 6779999987
No 70
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.31 E-value=1.1e-11 Score=135.70 Aligned_cols=163 Identities=20% Similarity=0.155 Sum_probs=106.0
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccC---------
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS--------- 420 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~--------- 420 (733)
+++|++|||+||+++|+|+ .+. |.+ +++++|..
T Consensus 2 kVlValSGGvDSsv~a~lL-------~~~---G~~----------------------------V~~v~~~~~~~~~~~~~ 43 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLL-------KQQ---GYE----------------------------VVGVFMKNWEEDDKNDG 43 (352)
T ss_pred eEEEEEeCCHHHHHHHHHH-------HHc---CCe----------------------------EEEEEEEcccccccccc
Confidence 6899999999999999886 222 443 46788731
Q ss_pred -cCChHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHhh--hCCCCceeecCCccccccchhhHHHHHHHHHHHHH
Q 004727 421 -ENSSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTL--TGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFML 496 (733)
Q Consensus 421 -~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~-~~~~~~~~--~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~ 496 (733)
...+.++.++|+++|+.||++|+++++++.+.. +...+.+. .|.+ ++++..+|..-|.+. ++.+
T Consensus 44 ~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~~~~~~y~~g~t----------pnpC~~Cnr~iKf~~--l~~~ 111 (352)
T TIGR00420 44 HGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRT----------PNPDILCNKFIKFGA--FLEY 111 (352)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHHHHHHHHcCCC----------CCcchhhhHHHHHHH--HHHH
Confidence 124567899999999999999999999876532 22232221 2333 356778887766554 3334
Q ss_pred HhhcccccCCCcEEEEeccCccc---ccccccccccc-----CC------------CCCCCCCCCCcHHhHHHHHHHHHh
Q 004727 497 ASLLPWVHNKPGFYLVLGSSNVD---EGLRGYLTKYD-----CS------------SADINPIGSISKQDLRTFLRWAAT 556 (733)
Q Consensus 497 A~~~~~~~~~~g~~lVlgT~N~s---E~~~Gy~T~~g-----d~------------~~~i~Pi~~l~K~~vr~l~~~~~~ 556 (733)
|... . |.-.+.||+.. .....|.-+.+ |. ...+.||++++|.||+++ ++
T Consensus 112 a~~~------~-G~~~IATGHya~~~~d~~~~~l~~~~d~~kDqsy~L~~l~~~~l~~~i~PL~~~~K~EVr~~----A~ 180 (352)
T TIGR00420 112 AAEL------L-GNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLSHEQLAKLLFPLGELLKPEVRQI----AK 180 (352)
T ss_pred HHHH------c-CCCEEEECCcceEeCCCCcEEEEEccCCCcCcceecccCCHHHhhhhcccCCCCCHHHHHHH----HH
Confidence 4321 0 23456676643 11111111111 11 346889999999999999 56
Q ss_pred hcCCccchhhhcCCCCccccc
Q 004727 557 HLGYSSLAEIEAAPPTAELEP 577 (733)
Q Consensus 557 ~~g~p~l~~i~~~~psaeL~p 577 (733)
..|+| ..++|.|.+++=
T Consensus 181 ~~gl~----~~~k~~Sq~iCF 197 (352)
T TIGR00420 181 NAGLP----TAEKKDSQGICF 197 (352)
T ss_pred HcCCC----CCCCCCCCCeEE
Confidence 68888 788999999874
No 71
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.28 E-value=5.9e-12 Score=127.52 Aligned_cols=153 Identities=24% Similarity=0.272 Sum_probs=102.0
Q ss_pred eeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHH
Q 004727 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (733)
Q Consensus 351 ~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~ 430 (733)
++|++|||+||++++.++ .+.. +.+ +.++++.+...+..+.+.
T Consensus 1 vvva~SGG~DS~~ll~ll-------~~~~--~~~----------------------------v~~v~vd~g~~~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAA-------VDAL--GDR----------------------------VLAVTATSPLFPRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHH-------HHHh--CCc----------------------------EEEEEeCCCCCCHHHHHH
Confidence 589999999999988886 2322 111 467888776667789999
Q ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCcEE
Q 004727 431 AKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFY 510 (733)
Q Consensus 431 A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g~~ 510 (733)
|+++|+.+|++|+++++++.... .+. +..+ . .+....+.|+-.+..+|+.+ | .
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~~~~---~~~---~~~~----------~---~~~~~r~~~~~~l~~~a~~~-------g-~ 96 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDELDDP---EFA---KNPP----------D---RCYLCKKALYEALKEIAEEL-------G-L 96 (202)
T ss_pred HHHHHHHcCCcEEEEeCCccccH---HHh---cCCC----------C---ccchhHHHHHHHHHHHHHHC-------C-C
Confidence 99999999999999999853221 111 1001 1 12344455665666666543 2 2
Q ss_pred EEeccC-ccccccc---cccccccCCCCCCCCCC--CCcHHhHHHHHHHHHhhcCCccchhhhcCCCCccccc
Q 004727 511 LVLGSS-NVDEGLR---GYLTKYDCSSADINPIG--SISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577 (733)
Q Consensus 511 lVlgT~-N~sE~~~---Gy~T~~gd~~~~i~Pi~--~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~psaeL~p 577 (733)
-++.|| |.+|..- |+....+ ...+.|+. +++|.+|+++ ++++|+| +++.|+++|+..
T Consensus 97 ~~I~~G~~~dD~~e~~~~~~~~~~--~~iirPL~~~~~~K~ei~~~----a~~~gl~----~~~~~~~~c~~~ 159 (202)
T cd01990 97 DVVLDGTNADDLGDYRPGLKALRE--LGVRSPLAEAGLGKAEIREL----ARELGLP----TWDKPAMACLAS 159 (202)
T ss_pred CEEEEcCccccCcccChHHHHHHH--cCCcCchhhcCCCHHHHHHH----HHHcCCC----CcCCCCcchHHh
Confidence 233333 5666543 3333322 45899998 7999999999 4668888 688899998754
No 72
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.20 E-value=2.1e-11 Score=135.74 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=105.9
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccC-cCChHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS-ENSSQET 427 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~-~~ss~~t 427 (733)
++++++||||+||+++|.++ .+. |.+ ++++++.+ .+.++.+
T Consensus 177 gkvvvllSGGiDS~vaa~l~-------~k~---G~~----------------------------v~av~~~~~~~~~~~~ 218 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLA-------MKR---GVE----------------------------IEAVHFHSPPYTSERA 218 (394)
T ss_pred CCEEEEECCChhHHHHHHHH-------HHC---CCE----------------------------EEEEEEeCCCCCcHHH
Confidence 46999999999999988886 221 433 46677744 3566778
Q ss_pred HHHHHHHHHHhc-----ccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhccc
Q 004727 428 RMLAKKLADEIG-----SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (733)
Q Consensus 428 ~~~A~~lA~~lG-----i~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~ 502 (733)
.+.++++|+.|+ ++|+++|++++...+.. ..| +. ..+++.-|+++.+++.+|+..
T Consensus 219 ~~~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~~-------~~~----------~~-~~~v~~Rr~~~~~a~~~A~~~-- 278 (394)
T PRK01565 219 KEKVIDLARILAKYGGRIKLHVVPFTEIQEEIKK-------KVP----------ES-YLMTLMRRFMMRIADKIAEKR-- 278 (394)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHhh-------cCC----------Cc-eEEEeHHHHHHHHHHHHHHHc--
Confidence 899999999996 99999999986533321 111 11 134567778888888888764
Q ss_pred ccCCCcEEEEeccCcc-----ccccccccccc-cCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCCCCcc
Q 004727 503 VHNKPGFYLVLGSSNV-----DEGLRGYLTKY-DCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAE 574 (733)
Q Consensus 503 ~~~~~g~~lVlgT~N~-----sE~~~Gy~T~~-gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~psae 574 (733)
|..+|.||+- |+...|+.... +.....+.|+.+++|+||+++ ++++|.. ++..+|+.+|
T Consensus 279 ------g~~~IvtG~~~~d~~sqt~~~l~~i~~~~~~~V~rPLig~~K~EI~~l----Ar~iG~~---~~s~~p~~~c 343 (394)
T PRK01565 279 ------GALAIVTGESLGQVASQTLESMYAINAVTNLPVLRPLIGMDKEEIIEI----AKEIGTY---DISILPYEDC 343 (394)
T ss_pred ------CCCEEEEccccccccHHHHHHHHHHhhccCcEEEECCCCCCHHHHHHH----HHHhCCH---HHhcCCCcCe
Confidence 3455666554 34455654331 222456899999999999999 4557753 3667788867
No 73
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.13 E-value=1.7e-10 Score=132.44 Aligned_cols=175 Identities=20% Similarity=0.216 Sum_probs=105.0
Q ss_pred cchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhhe
Q 004727 335 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFY 414 (733)
Q Consensus 335 ~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 414 (733)
...+|+++++. ++++|++|||+||+++|+++ .+++ |.+ ++
T Consensus 205 ~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll-------~~~l--g~~----------------------------v~ 244 (511)
T PRK00074 205 AIEEIREQVGD---KKVILGLSGGVDSSVAAVLL-------HKAI--GDQ----------------------------LT 244 (511)
T ss_pred HHHHHHHhcCC---CcEEEEeCCCccHHHHHHHH-------HHHh--CCc----------------------------eE
Confidence 44567777764 78999999999999999887 4555 322 57
Q ss_pred eeeccCcCChHHHHHHHHH-HHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHH
Q 004727 415 TVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLA 493 (733)
Q Consensus 415 ~v~m~~~~ss~~t~~~A~~-lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~ 493 (733)
++++++......+.++|++ +|+.+|++|+++++++.+ .+.+... + ++++ ...+-.+...-++
T Consensus 245 av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f---~~~l~g~---~---------~~~~--~r~~~~~~~~~~~ 307 (511)
T PRK00074 245 CVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRF---LSALAGV---T---------DPEE--KRKIIGREFIEVF 307 (511)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHH---HHhccCC---C---------CcHH--hhhhhhHHHHHHH
Confidence 8999876544556677775 789999999999998543 2222211 0 1111 1111111111223
Q ss_pred HHHHhhcccccCCCcEEEEeccCcccccc--cccc----c-----ccc----CCCCCCCCCCCCcHHhHHHHHHHHHhhc
Q 004727 494 FMLASLLPWVHNKPGFYLVLGSSNVDEGL--RGYL----T-----KYD----CSSADINPIGSISKQDLRTFLRWAATHL 558 (733)
Q Consensus 494 ~~~A~~~~~~~~~~g~~lVlgT~N~sE~~--~Gy~----T-----~~g----d~~~~i~Pi~~l~K~~vr~l~~~~~~~~ 558 (733)
..+|..+ + ....++.|| |+++.. ++.. . ..| ...+.+.||..++|.|||++ ++.+
T Consensus 308 ~~~a~~~----~-g~~~latGh-n~dD~~Et~~~~~~~~ik~~~~l~Gl~~~~~~~ii~PL~~l~K~EIr~~----a~~~ 377 (511)
T PRK00074 308 EEEAKKL----G-GVKFLAQGT-LYPDVIESGGTKKAATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKL----GLEL 377 (511)
T ss_pred HHHHHHc----c-CCCEEEECC-CcchhhhhcCCCCccccccccCccCcChhHhcccccchhhcCHHHHHHH----HHHc
Confidence 3333221 0 112344443 344321 1110 0 012 12458999999999999999 5668
Q ss_pred CCccchhhhcCC-CCccccc
Q 004727 559 GYSSLAEIEAAP-PTAELEP 577 (733)
Q Consensus 559 g~p~l~~i~~~~-psaeL~p 577 (733)
|+| .+.++++| |.|+|..
T Consensus 378 gLp-~~~~~~~p~p~~~la~ 396 (511)
T PRK00074 378 GLP-EEIVYRHPFPGPGLAI 396 (511)
T ss_pred CCC-HHHhCCCCCCCCceee
Confidence 887 24466899 9999986
No 74
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.04 E-value=4.4e-10 Score=111.71 Aligned_cols=152 Identities=18% Similarity=0.128 Sum_probs=94.6
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcC--ChHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQET 427 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~--ss~~t 427 (733)
+++|++|||+||++++.++ .+....-+-. ++ ++++++.... .++.+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l-------~~~~~~~~~~---------------~~----------~~~~~~d~~~~~~~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVL-------KKLQRRYPYG---------------FE----------LEALTVDEGIPGYRDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHhhcCCC---------------eE----------EEEEEEECCCCCCcHHH
Confidence 4899999999999988886 2221100000 00 4677776433 45788
Q ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCC
Q 004727 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (733)
Q Consensus 428 ~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~ 507 (733)
.+.++++|+.+|+++..+++++.+ ....... . ......++.-.|.|+..++.+|..+
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~-----~----------~~~~~~~~~c~~~r~~~l~~~a~~~------- 105 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEY-TDDIEVK-----K----------RGGKSPCSLCGVLRRGLLNKIAKEL------- 105 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhc-chhhhhh-----c----------cCCCCCCCccHHHHHHHHHHHHHHc-------
Confidence 899999999999999999998644 1000000 0 1112345666788888888888654
Q ss_pred cEEEEeccCc-ccccc--------ccc-----c-----ccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 508 GFYLVLGSSN-VDEGL--------RGY-----L-----TKYDCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 508 g~~lVlgT~N-~sE~~--------~Gy-----~-----T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
+.-++.||+ .++.+ .|. . .........+.|+.+++|.||++++ +..|+|
T Consensus 106 -g~~~l~~Gh~~dD~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~~iirPL~~~~k~eI~~~~----~~~~l~ 173 (185)
T cd01993 106 -GADKLATGHNLDDEAETLLMNLLRGGILRLMRPGPILYLDEGDVTRIRPLVYVREKEIVLYA----ELNGLP 173 (185)
T ss_pred -CCCEEEEcCChHHHHHHHHHHHHhcCHHHHcCCCCccccCCCCceEEeecccCCHHHHHHHH----HHcCCC
Confidence 233444444 34322 111 1 1122334578999999999999995 557887
No 75
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.03 E-value=2.1e-10 Score=118.28 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=94.0
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|.+|||+||+++++++ .+. |.+ ++++++.+.+.+..++
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a-------~~~---~~~----------------------------v~alt~dygq~~~~El 43 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQA-------LQQ---YDE----------------------------VHCVTFDYGQRHRAEI 43 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHH-------Hhc---CCe----------------------------EEEEEEEeCCCCHHHH
Confidence 47999999999999988876 221 222 4788888877778899
Q ss_pred HHHHHHHHHhccc-ccccchhHHHHHH-HHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHH--HHhhccccc
Q 004727 429 MLAKKLADEIGSW-HLDVSIDTVVSAF-LSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFM--LASLLPWVH 504 (733)
Q Consensus 429 ~~A~~lA~~lGi~-~~~i~I~~~~~~~-~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~--~A~~~~~~~ 504 (733)
+.|+.+|+.+|++ |++||++.+- .+ .+.+.+.....|.+.. +..+....-+..|.-..+..+ +|..
T Consensus 44 ~~a~~ia~~~gi~~h~vid~~~l~-~l~~s~Lt~~~~~~p~~~~----~~~~~~~~~vP~RN~lflslAa~~A~~----- 113 (231)
T PRK11106 44 DVARELALKLGARAHKVLDVTLLN-ELAVSSLTRDSIPVPDYEP----EADGLPNTFVPGRNILFLTLAAIYAYQ----- 113 (231)
T ss_pred HHHHHHHHHcCCCeEEEEeccccc-cccccccccccccCCcccc----ccCCCCCEEEecHHHHHHHHHHHHHHH-----
Confidence 9999999999996 9999998532 11 1122211111232210 001122222344443333332 2332
Q ss_pred CCCcEEEEeccC--cccccccc-------------ccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcC-Cc
Q 004727 505 NKPGFYLVLGSS--NVDEGLRG-------------YLTKYDCSSADINPIGSISKQDLRTFLRWAATHLG-YS 561 (733)
Q Consensus 505 ~~~g~~lVlgT~--N~sE~~~G-------------y~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g-~p 561 (733)
.+-..+++|+. +.+..--| +.|. ......+|+.+++|.||+++ ++++| +|
T Consensus 114 -~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~~~--~~i~I~aPl~~lsK~eI~~l----~~~lg~v~ 179 (231)
T PRK11106 114 -VKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMA--KDIRFETPLMWLNKAETWAL----ADYYGQLD 179 (231)
T ss_pred -cCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHhccC--CCcEEEecCCCCCHHHHHHH----HHHcCCcc
Confidence 23356778873 22221111 1121 12568899999999999999 56688 66
No 76
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.01 E-value=1.5e-09 Score=108.62 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=92.0
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhc-CchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcC--ChHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISN-GDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQE 426 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~-G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~--ss~~ 426 (733)
+++|++|||.||++++.++ .+.... |.+ +.++++.... .+..
T Consensus 1 ~v~va~SGG~DS~~ll~ll-------~~~~~~~~~~----------------------------v~~v~vd~g~~~~~~~ 45 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLL-------LKLQPKLKIR----------------------------LIAAHVDHGLRPESDE 45 (189)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHHHcCCC----------------------------EEEEEeCCCCChhHHH
Confidence 4899999999999988886 222110 111 4677776544 3466
Q ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCC
Q 004727 427 TRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 427 t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~ 506 (733)
+.+.++.+|+.+|++++.++++.... . +. .....++...++|+..++.+|..+
T Consensus 46 ~~~~~~~~~~~~gi~~~~~~~~~~~~------~------~~---------~~~~~~~~~r~~R~~~l~~~a~~~------ 98 (189)
T TIGR02432 46 EAEFVQQFCKKLNIPLEIKKVDVKAL------A------KG---------KKKNLEEAAREARYDFFEEIAKKH------ 98 (189)
T ss_pred HHHHHHHHHHHcCCCEEEEEecchhh------c------cc---------cCCCHHHHHHHHHHHHHHHHHHHc------
Confidence 88999999999999999999864210 0 00 111245566788888888888653
Q ss_pred CcEEEEeccCcccccc--------ccc-----cc-----cccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 507 PGFYLVLGSSNVDEGL--------RGY-----LT-----KYDCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 507 ~g~~lVlgT~N~sE~~--------~Gy-----~T-----~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
+-..+++|+ |.++.+ .|. .. .++.....+.|+.+++|.||++++ +..|+|
T Consensus 99 g~~~i~~Gh-~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~~~k~ei~~~~----~~~~lp 166 (189)
T TIGR02432 99 GADYILTAH-HADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLGISKSEIEEYL----KENGLP 166 (189)
T ss_pred CCCEEEEcC-ccHHHHHHHHHHHHcCCCcccccCCccccccCCCCEEECCCCCCCHHHHHHHH----HHcCCC
Confidence 112344443 233321 222 11 112133469999999999999994 557888
No 77
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.00 E-value=5.8e-10 Score=112.67 Aligned_cols=162 Identities=21% Similarity=0.222 Sum_probs=99.7
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHH
Q 004727 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t 427 (733)
.++.||-||||+||+++|+++ .+. |.+ ++++++.+.+.+..+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a-------~~~---~~e----------------------------v~alsfdYGQrh~~E 43 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWA-------KKE---GYE----------------------------VHALTFDYGQRHRKE 43 (222)
T ss_pred CceEEEEccCChhHHHHHHHH-------Hhc---CCE----------------------------EEEEEeeCCCCcHHH
Confidence 367899999999999999887 222 333 689999988888999
Q ss_pred HHHHHHHHHHhcccccccchhHHHHHHH-HHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCC
Q 004727 428 RMLAKKLADEIGSWHLDVSIDTVVSAFL-SLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 428 ~~~A~~lA~~lGi~~~~i~I~~~~~~~~-~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~ 506 (733)
++.|+++|+.||++|++||++-+-+ +. +.+.+-....|+... ..+.+...=+.+|.--.+.++.+ ++...
T Consensus 44 le~A~~iak~lgv~~~iid~~~~~~-~~~saLtd~~~~vp~~~~----~~~~~p~t~VP~RN~iflsiA~~----~Ae~~ 114 (222)
T COG0603 44 LEAAKELAKKLGVPHHIIDVDLLGE-IGGSALTDDSIDVPKYEF----AEEEIPATFVPARNLIFLSIAAA----YAEAL 114 (222)
T ss_pred HHHHHHHHHHcCCCeEEechhHHhh-cCCCcCcCCCcccccccc----ccccCcceEeccccHHHHHHHHH----HHHHc
Confidence 9999999999999999999985432 21 222221112333210 11223333456665544443332 11122
Q ss_pred CcEEEEeccCc---------ccc------ccccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 507 PGFYLVLGSSN---------VDE------GLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 507 ~g~~lVlgT~N---------~sE------~~~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
....+++|-.- +.| .++-+.|..|--. ..+|+..++|.++.++ +.++|+|
T Consensus 115 g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~l~~~~~~~~-i~aPl~~l~Ka~iv~l----~~elg~~ 179 (222)
T COG0603 115 GADAIIIGVNEEDFSGYPDCRPEFIEALNEALNLGTEKGVRI-IHAPLMELTKAEIVKL----ADELGVP 179 (222)
T ss_pred CCCeEEEEecccccCCCCCCCHHHHHHHHHHHHhhccCCccE-EeCCeeeccHHHHHHH----HHHhCCc
Confidence 22456666421 111 1223344443221 4799999999999999 5667755
No 78
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.85 E-value=1.4e-08 Score=111.90 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=98.4
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|++|||+|||++++++ .+ . |.+ ++++++.+...+.+++
T Consensus 3 ~kVvVA~SGGvDSSvla~~l-------~e-~--G~~----------------------------Viavt~d~gq~~~~El 44 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYL-------QE-R--GYA----------------------------VHTVFADTGGVDAEER 44 (400)
T ss_pred CcEEEEEcCChHHHHHHHHH-------HH-c--CCc----------------------------EEEEEEEeCCCCHHHH
Confidence 57999999999999988886 22 2 443 5788888776667899
Q ss_pred HHHHHHHHHhcc-cccccchhHHHHH-HHHHHHh----hhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhccc
Q 004727 429 MLAKKLADEIGS-WHLDVSIDTVVSA-FLSLFQT----LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (733)
Q Consensus 429 ~~A~~lA~~lGi-~~~~i~I~~~~~~-~~~~~~~----~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~ 502 (733)
++|+++|+.+|+ +|+++|+++.+.. +...+-. .-|.+| ..++ |-.-..+ .+...|..+
T Consensus 45 ~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~y~G~yP----------l~~~--nR~~~~~--~l~e~A~~~-- 108 (400)
T PRK04527 45 DFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEGYQGQYP----------LLVS--DRYLIVD--AALKRAEEL-- 108 (400)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchhhcCCCC----------Cccc--cHHHHHH--HHHHHHHHC--
Confidence 999999999999 5999999987653 3332221 113333 2222 2222222 222334322
Q ss_pred ccCCCcEEEEeccCcc-c---cccccccccccCCCCCCCCC--CCCcHHhHHHHHHHHHhhcCCccc
Q 004727 503 VHNKPGFYLVLGSSNV-D---EGLRGYLTKYDCSSADINPI--GSISKQDLRTFLRWAATHLGYSSL 563 (733)
Q Consensus 503 ~~~~~g~~lVlgT~N~-s---E~~~Gy~T~~gd~~~~i~Pi--~~l~K~~vr~l~~~~~~~~g~p~l 563 (733)
.-..++-|+.|+ + +...|..... ..+.++|+ .+++|.++|+-....+++.|+|+.
T Consensus 109 ----G~~~IA~G~tgkgnDq~rfrpg~~Al~--el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 109 ----GTRIIAHGCTGMGNDQVRFDLAVKALG--DYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred ----CCCEEEecCcCCCCchhhccHHHHHhh--cCCccchHHHhcCcccccHHHHHHHHHHcCCCCC
Confidence 234566677544 2 3445555543 56799999 556777888544444666788853
No 79
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.82 E-value=1.7e-08 Score=111.63 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=92.9
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHH
Q 004727 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t 427 (733)
.++++|++|||+||+++|.++ .+.+ |.+ ++++++.+... .+
T Consensus 2 ~~kVvva~SGGlDSsvla~~l-------~e~l--G~e----------------------------Viavt~d~Gq~--~d 42 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWL-------KETY--GCE----------------------------VIAFTADVGQG--EE 42 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHH-------HHhh--CCe----------------------------EEEEEEecCCH--HH
Confidence 358999999999999988876 3333 333 47888876543 68
Q ss_pred HHHHHHHHHHhcc-cccccchhHHHH-HHH-HHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhccccc
Q 004727 428 RMLAKKLADEIGS-WHLDVSIDTVVS-AFL-SLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVH 504 (733)
Q Consensus 428 ~~~A~~lA~~lGi-~~~~i~I~~~~~-~~~-~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~ 504 (733)
.+.|+++|+.+|+ +|+++|+.+.+. .+. ..+.. .+.+ .|..+..++++|..- .+ .+...|...
T Consensus 43 le~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~----n~~y---~g~ypl~~~lcr~~i-~~--~l~~~A~~~---- 108 (399)
T PRK00509 43 LEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRA----NALY---EGKYPLGTALARPLI-AK--KLVEIARKE---- 108 (399)
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHh----ChHh---cCcCCCchHHHHHHH-HH--HHHHHHHHc----
Confidence 9999999999998 578889986553 232 22221 0001 122234455555432 22 233344332
Q ss_pred CCCcEEEEeccCc--c--ccccccccccccCCCCCCCCCCCC---cHHhHHHHHHHHHhhcCCcc
Q 004727 505 NKPGFYLVLGSSN--V--DEGLRGYLTKYDCSSADINPIGSI---SKQDLRTFLRWAATHLGYSS 562 (733)
Q Consensus 505 ~~~g~~lVlgT~N--~--sE~~~Gy~T~~gd~~~~i~Pi~~l---~K~~vr~l~~~~~~~~g~p~ 562 (733)
+-..+.-|+.- . .+...|+.... ...+.++|+.+. +|.+++++ ++++|+|+
T Consensus 109 --G~~~IA~G~t~kGnDq~rf~~g~~al~-pel~VisPlre~~~~tK~eir~~----A~~~Gipv 166 (399)
T PRK00509 109 --GADAVAHGCTGKGNDQVRFELGIAALA-PDLKVIAPWREWDLKSREELIAY----AEEHGIPI 166 (399)
T ss_pred --CCCEEEeCCCcCCCCHHHHHHHHHHhC-CCCeeecchhhcCCCCHHHHHHH----HHHcCCCC
Confidence 11233334422 1 23334444442 234799999776 99999999 56688884
No 80
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.81 E-value=2e-09 Score=109.69 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=81.0
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
++||.+|||+||+++++++ .+. |.+ ++++++.+.+....+++
T Consensus 1 Kavvl~SGG~DSt~~l~~~-------~~~---~~~----------------------------v~al~~~YGq~~~~El~ 42 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWA-------KKE---GYE----------------------------VYALTFDYGQRHRRELE 42 (209)
T ss_dssp EEEEE--SSHHHHHHHHHH-------HHH----SE----------------------------EEEEEEESSSTTCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHc---CCe----------------------------EEEEEEECCCCCHHHHH
Confidence 5799999999999998886 222 333 57888888777889999
Q ss_pred HHHHHHHHhcc-cccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCc
Q 004727 430 LAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (733)
Q Consensus 430 ~A~~lA~~lGi-~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g 508 (733)
.|+++|+.+|+ +|++|+++.+.+-..+.+.+-....|. +....+.....=+..|.-..+..+.+ |+...+-
T Consensus 43 ~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~v~~----~~~~~~~~~~t~vP~RN~l~lsiAa~----~A~~~g~ 114 (209)
T PF06508_consen 43 AAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDDSIEVPE----EEYSEESIPSTYVPFRNGLFLSIAAS----YAESLGA 114 (209)
T ss_dssp HHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHTT----------------------TTHHHHHHHHHHH----HHHHHT-
T ss_pred HHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCCCcCCcc----cccccCCCCceEEecCcHHHHHHHHH----HHHHCCC
Confidence 99999999999 999999986543222233321111221 00011223333345555443332222 2222233
Q ss_pred EEEEeccCccccccccccc--------------c-ccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 509 FYLVLGSSNVDEGLRGYLT--------------K-YDCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 509 ~~lVlgT~N~sE~~~Gy~T--------------~-~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
..+++|.- .++ ..||-. . .+......+|+.+++|.||.++ +.++|+|
T Consensus 115 ~~i~~G~~-~~D-~~~ypDc~~~F~~~~~~~~~~~~~~~v~i~~P~~~~tK~eiv~~----~~~lg~~ 176 (209)
T PF06508_consen 115 EAIYIGVN-AED-ASGYPDCRPEFIDAMNRLLNLGEGGPVRIETPLIDLTKAEIVKL----GVELGVP 176 (209)
T ss_dssp SEEEE----S-S-TT--GGGSHHHHHHHHHHHHHHHTS--EEE-TTTT--HHHHHHH----HHHTTHH
T ss_pred CEEEEEEC-cCc-cCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCHHHHHHH----HHHcCCC
Confidence 55777763 222 123310 0 1233557899999999999999 4556654
No 81
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=98.81 E-value=2.2e-08 Score=102.92 Aligned_cols=164 Identities=23% Similarity=0.280 Sum_probs=101.1
Q ss_pred hhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCC
Q 004727 344 RRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS 423 (733)
Q Consensus 344 ~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~s 423 (733)
.+-|..+++++||||+|||++|+|+ .+|+| +. ++|++.....-
T Consensus 17 ~~vg~~kvi~alSGGVDSsv~a~L~-------~~AiG--d~----------------------------l~cvfVD~GLl 59 (315)
T COG0519 17 EQVGDGKVILALSGGVDSSVAAVLA-------HRAIG--DQ----------------------------LTCVFVDHGLL 59 (315)
T ss_pred HHhCCceEEEEecCCCcHHHHHHHH-------HHHhh--cc----------------------------eEEEEecCCcc
Confidence 3457789999999999999999998 67774 22 57888776543
Q ss_pred hHHHH-HHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhccc
Q 004727 424 SQETR-MLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (733)
Q Consensus 424 s~~t~-~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~ 502 (733)
...+. +--+.+.+.+|++...+|-. +.|++.++.++...-+- -..+|.-.++ .-..|+.+
T Consensus 60 R~~E~e~V~~~f~~~~~~nl~~VdA~---~~Fl~~L~GvtDPE~KR----------KiIG~~FI~V----Fe~ea~k~-- 120 (315)
T COG0519 60 RKGEAEQVVEMFREHLGLNLIVVDAK---DRFLSALKGVTDPEEKR----------KIIGREFIEV----FEEEAKKL-- 120 (315)
T ss_pred cCCcHHHHHHHHHhhcCCceEEEchH---HHHHHHhcCCCCHHHHH----------HHHHHHHHHH----HHHHHHhC--
Confidence 33333 33445666699999888876 45666666543211100 0111111111 11122222
Q ss_pred ccCCCcEEEEecc--Ccccccc------------ccccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhc
Q 004727 503 VHNKPGFYLVLGS--SNVDEGL------------RGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEA 568 (733)
Q Consensus 503 ~~~~~g~~lVlgT--~N~sE~~------------~Gy~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~ 568 (733)
.--+|+-|| .+.-|+. +|-..+ ++...-+-||..++|.+||++ ++.||+| ++++.
T Consensus 121 ----~~~~LaQGTiYpDvIES~~g~~~~IKSHHNVGGLP~-~m~lkLvEPLr~LfKDEVR~l----g~~LGlp--~~iv~ 189 (315)
T COG0519 121 ----GAEFLAQGTIYPDVIESGTGKAGTIKSHHNVGGLPE-DMKLKLVEPLRELFKDEVREL----GRELGLP--EEIVY 189 (315)
T ss_pred ----CcceEEecccccceeeecCCCCCccccccccCCCcc-ccceeeeHHHHHHhHHHHHHH----HHHhCCC--HHHhc
Confidence 113466666 3333433 333222 233557899999999999999 6679998 99999
Q ss_pred CCCCcc
Q 004727 569 APPTAE 574 (733)
Q Consensus 569 ~~psae 574 (733)
+.|-|+
T Consensus 190 RhPFPG 195 (315)
T COG0519 190 RHPFPG 195 (315)
T ss_pred cCCCCC
Confidence 998865
No 82
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.75 E-value=4.3e-08 Score=94.82 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=77.1
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
.++|++|||+||+++++++ .+.. ..+ +.++++.....++++.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~-------~~~~---~~~---------------------------v~~v~~~~g~~~~~~~~ 45 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLL-------KEKY---GLN---------------------------PLAVTVDNGFNSEEAVK 45 (154)
T ss_pred CEEEECCCchhHHHHHHHH-------HHHh---CCc---------------------------eEEEEeCCCCCCHHHHH
Confidence 4799999999999988886 3322 111 35677766566677899
Q ss_pred HHHHHHHH-hcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCc
Q 004727 430 LAKKLADE-IGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (733)
Q Consensus 430 ~A~~lA~~-lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g 508 (733)
.++++|+. +++.+..+++++..+.....+. +.. ..+ ++...|.|+..+..+|... |
T Consensus 46 ~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l~---~~~----------~~p---~~~~~~~~~~~~~~~A~~~-------g 102 (154)
T cd01996 46 NIKNLIKKGLDLDHLVINPEEMKDLQLARFK---AKV----------GDP---CWPCDTAIFTSLYKVALKF-------G 102 (154)
T ss_pred HHHHHHHhCCCeEEEecCHHHHHHHHHHHHh---ccc----------CCC---ChhhhHHHHHHHHHHHHHh-------C
Confidence 99999999 5555666777655444333332 110 011 2334466666666666543 3
Q ss_pred EEEEeccCcccccccccccc
Q 004727 509 FYLVLGSSNVDEGLRGYLTK 528 (733)
Q Consensus 509 ~~lVlgT~N~sE~~~Gy~T~ 528 (733)
...++...|.+|...||.+.
T Consensus 103 ~~~il~G~~~de~~~Gy~~~ 122 (154)
T cd01996 103 IPLIITGENPAQEFGGIREE 122 (154)
T ss_pred cCEEEeCcCHHHhccccccc
Confidence 33667778899999999865
No 83
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.74 E-value=4.7e-08 Score=108.07 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=89.1
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|++|||+||++++.++ .+.+ |.++ ++++++.... ..++.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL-------~e~~--g~~~---------------------------Viav~vd~g~-~~~e~ 45 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLL-------KEKY--GYDE---------------------------VITVTVDVGQ-PEEEI 45 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHH-------HHhc--CCCE---------------------------EEEEEEECCC-ChHHH
Confidence 68999999999999988876 3333 2211 4677776543 34678
Q ss_pred HHHHHHHHHhcccccccchhHHHH-HHH-HHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCC
Q 004727 429 MLAKKLADEIGSWHLDVSIDTVVS-AFL-SLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~~~~-~~~-~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~ 506 (733)
+.|+++|+.+|++|+++|+++.+. .+. ..+.. ..+ + .|. +..+++++ ++|...+..+|+..
T Consensus 46 ~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~---n~~-~---~gY-pl~~~~cR---~~i~~~l~e~A~e~------ 108 (394)
T PRK13820 46 KEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKA---NAL-Y---EGY-PLGTALAR---PLIAEKIVEVAEKE------ 108 (394)
T ss_pred HHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHh---Ccc-c---cCC-cCcHHHHH---HHHHHHHHHHHHHc------
Confidence 899999999999999999995433 332 22221 000 0 011 11111211 12222333444332
Q ss_pred CcEEEEeccCcc--ccc--cccccccccCCCCCCCCCCC--CcHHhHHHHHHHHHhhcCCcc
Q 004727 507 PGFYLVLGSSNV--DEG--LRGYLTKYDCSSADINPIGS--ISKQDLRTFLRWAATHLGYSS 562 (733)
Q Consensus 507 ~g~~lVlgT~N~--sE~--~~Gy~T~~gd~~~~i~Pi~~--l~K~~vr~l~~~~~~~~g~p~ 562 (733)
+-..+..|+.-. |.. ..|.... ..+.++|+.+ ++|.|++++ +++.|+|+
T Consensus 109 G~~~IA~G~t~~gnDq~rfe~~~~a~---~l~viaP~re~~ltK~ei~~y----a~~~gip~ 163 (394)
T PRK13820 109 GASAIAHGCTGKGNDQLRFEAVFRAS---DLEVIAPIRELNLTREWEIEY----AKEKGIPV 163 (394)
T ss_pred CCCEEEECCCCCcchHHHHHHhhHhh---cCeeeCchhccCCCHHHHHHH----HHHcCCCC
Confidence 223444544112 332 3333322 3578899977 899999999 46678774
No 84
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.72 E-value=9.1e-09 Score=104.31 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=49.0
Q ss_pred eeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHH
Q 004727 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (733)
Q Consensus 351 ~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~ 430 (733)
++|+||||+||+++++++ .+ . |.+ +.+++++....+..+.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~-------~~-~--g~~----------------------------v~~~~~~~~~~~~~e~~~ 42 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIA-------KD-E--GYE----------------------------VHAITFDYGQRHSRELES 42 (201)
T ss_pred CEEEeccHHHHHHHHHHH-------HH-c--CCc----------------------------EEEEEEECCCCCHHHHHH
Confidence 489999999999988776 22 1 322 467888766666778899
Q ss_pred HHHHHHHhcccccccchhH
Q 004727 431 AKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 431 A~~lA~~lGi~~~~i~I~~ 449 (733)
|+++|+.+|++|++++++.
T Consensus 43 a~~~a~~lgi~~~~~~~~~ 61 (201)
T TIGR00364 43 ARKIAEALGIEHHVIDLSL 61 (201)
T ss_pred HHHHHHHhCCCeEEEechh
Confidence 9999999999999999985
No 85
>PRK08349 hypothetical protein; Validated
Probab=98.69 E-value=1.1e-07 Score=96.26 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=85.9
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
++|+++|||+||+++|.++ .+ . |.+ ++++++.. +..+.+
T Consensus 2 ~~vvllSGG~DS~v~~~~l-------~~-~--g~~----------------------------v~av~~d~---~~~~~~ 40 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLM-------LR-R--GVE----------------------------VYPVHFRQ---DEKKEE 40 (198)
T ss_pred cEEEEccCChhHHHHHHHH-------HH-c--CCe----------------------------EEEEEEeC---CHHHHH
Confidence 5899999999999988875 11 1 333 57788764 345667
Q ss_pred HHHHHHHHhc----ccc---cccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhccc
Q 004727 430 LAKKLADEIG----SWH---LDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (733)
Q Consensus 430 ~A~~lA~~lG----i~~---~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~ 502 (733)
.|+++|+.++ ++| .++++.+........+... +. ....+..++ |++..++..+|..+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~----------~~~~c~~cr---~~~~~~a~~~A~~~-- 104 (198)
T PRK08349 41 KVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLREL-KK----------EKWTCIFCK---YTMYRKAERIAHEI-- 104 (198)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhh-CC----------CCCchHHHH---HHHHHHHHHHHHHc--
Confidence 7777777775 776 4455443222111111110 10 112233444 34444455555543
Q ss_pred ccCCCcEEEEeccCcccccc----cccccccc-CCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCCCCccc
Q 004727 503 VHNKPGFYLVLGSSNVDEGL----RGYLTKYD-CSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAEL 575 (733)
Q Consensus 503 ~~~~~g~~lVlgT~N~sE~~----~Gy~T~~g-d~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~psaeL 575 (733)
+-..++.| .|.++.+ ....+... .....+.|+.+++|.||+++ ++.+|.+ ++..+|+..|.
T Consensus 105 ----g~~~I~tG-~~~~d~a~~~l~nl~~~~~~~~i~i~rPL~~~~K~eI~~~----a~~~g~~---~~~~~~~~~C~ 170 (198)
T PRK08349 105 ----GASAIITG-DSLGQVASQTLDNLMVISTATDLPVLRPLIGLDKEEIVKI----AKEIGTF---EISIEPEPPCP 170 (198)
T ss_pred ----CCCEEEEe-cCCchHHHHHHHHHhccccccCCeEEcCCCCCCHHHHHHH----HHHcCCh---hhhhCCCCCCc
Confidence 22445555 2444322 11111111 11357889999999999999 4557744 34555666664
No 86
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.65 E-value=1.3e-07 Score=94.14 Aligned_cols=142 Identities=17% Similarity=0.209 Sum_probs=83.5
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhc-CchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCC--hHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISN-GDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS--SQE 426 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~-G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~s--s~~ 426 (733)
+++|++|||+||++++.++ .+.... |.+ +.++++.+... +.+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~-------~~~~~~~~~~----------------------------v~~v~id~~~~~~~~~ 45 (185)
T cd01992 1 KILVAVSGGPDSMALLHLL-------SELKPRLGLR----------------------------LVAVHVDHGLRPESDE 45 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHHHcCCc----------------------------EEEEEecCCCCchHHH
Confidence 4799999999999988886 222110 001 57888876543 358
Q ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCC
Q 004727 427 TRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 427 t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~ 506 (733)
+.+.++++|+.+|++++++... ... +. +.+ .+....++|..++..+|..+
T Consensus 46 ~~~~~~~~~~~~~i~~~~~~~~---------~~~--~~--------~~~-----~~~~~r~~r~~~l~~~a~~~------ 95 (185)
T cd01992 46 EAAFVADLCAKLGIPLYILVVA---------LAP--KP--------GGN-----LEAAAREARYDFFAEIAKEH------ 95 (185)
T ss_pred HHHHHHHHHHHcCCcEEEEeec---------ccc--CC--------CCC-----HHHHHHHHHHHHHHHHHHHc------
Confidence 9999999999999999888110 000 00 111 11222345555566666543
Q ss_pred CcEEEEeccCccccccc--------c--ccccc-------cCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 507 PGFYLVLGSSNVDEGLR--------G--YLTKY-------DCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 507 ~g~~lVlgT~N~sE~~~--------G--y~T~~-------gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
+-..+++|+ |.++.+. | ..++. ......+.|+.+++|.||+++ ++++|+|
T Consensus 96 ~~~~i~~Gh-~~dD~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~~k~eI~~~----~~~~~l~ 162 (185)
T cd01992 96 GADVLLTAH-HADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGITRAEIEAY----LRENGLP 162 (185)
T ss_pred CCCEEEEcC-CcHHHHHHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCCCHHHHHHH----HHHcCCC
Confidence 112344443 2333211 1 11111 123446899999999999999 4568888
No 87
>PRK14561 hypothetical protein; Provisional
Probab=98.60 E-value=1.2e-07 Score=95.70 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=77.0
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
+++|++|||+||+++++++ ..+ .+ | .+.++..+. ..+.+
T Consensus 2 kV~ValSGG~DSslll~~l--------~~~---~~-v-------------------------~a~t~~~g~----~~e~~ 40 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILL--------ERF---YD-V-------------------------ELVTVNFGV----LDSWK 40 (194)
T ss_pred EEEEEEechHHHHHHHHHH--------Hhc---CC-e-------------------------EEEEEecCc----hhHHH
Confidence 5899999999999988765 111 00 1 012333332 24588
Q ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHhh-hCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCc
Q 004727 430 LAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL-TGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (733)
Q Consensus 430 ~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~-~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g 508 (733)
.|+.+|+.+|++|+.++++.-+ .......+ ....| .|-...+|..+++..++ +-
T Consensus 41 ~a~~~a~~lGi~~~~v~~~~~~--~~~~~~~~~~~~~P---------------~~~~~~l~~~~l~~~a~--------g~ 95 (194)
T PRK14561 41 HAREAAKALGFPHRVLELDREI--LEKAVDMIIEDGYP---------------NNAIQYVHEHALEALAE--------EY 95 (194)
T ss_pred HHHHHHHHhCCCEEEEECCHHH--HHHHHHHHHHcCCC---------------CchhHHHHHHHHHHHHc--------CC
Confidence 9999999999999999988632 11111111 11112 12233455555555541 12
Q ss_pred EEEEeccCccccc-----ccccccccc-CCCCCCCCCCCCcHHhHHHHHH
Q 004727 509 FYLVLGSSNVDEG-----LRGYLTKYD-CSSADINPIGSISKQDLRTFLR 552 (733)
Q Consensus 509 ~~lVlgT~N~sE~-----~~Gy~T~~g-d~~~~i~Pi~~l~K~~vr~l~~ 552 (733)
+.++.|+ |.|+. ..|.....+ .+...+.|+.+++|.+|+++++
T Consensus 96 ~~Ia~G~-n~DD~~et~~r~~~~a~~~~~gi~iirPL~~~~K~eI~~la~ 144 (194)
T PRK14561 96 DVIADGT-RRDDRVPKLSRSEIQSLEDRKGVQYIRPLLGFGRKTIDRLVE 144 (194)
T ss_pred CEEEEEe-cCCCcchhccHHHHhhhhcCCCcEEEeeCCCCCHHHHHHHHH
Confidence 4455555 44442 222222211 1112489999999999999953
No 88
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.58 E-value=1.9e-07 Score=92.62 Aligned_cols=147 Identities=21% Similarity=0.158 Sum_probs=77.6
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHH---
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE--- 426 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~--- 426 (733)
+++|++|||+||+++|.++ .+. |.+ ++++++.....+.+
T Consensus 1 ~vlv~~SGG~DS~~la~ll-------~~~---g~~----------------------------v~av~~d~g~~~~~~~~ 42 (177)
T cd01712 1 KALALLSGGIDSPVAAWLL-------MKR---GIE----------------------------VDALHFNSGPFTSEKAR 42 (177)
T ss_pred CEEEEecCChhHHHHHHHH-------HHc---CCe----------------------------EEEEEEeCCCCCchHHH
Confidence 4789999999999988886 221 433 46777765443332
Q ss_pred -HHHHHHHHHHHhccccc--ccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccc
Q 004727 427 -TRMLAKKLADEIGSWHL--DVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWV 503 (733)
Q Consensus 427 -t~~~A~~lA~~lGi~~~--~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~ 503 (733)
....+...++.+|..|. +++.+.. .....+.. +.++ ..+..+|- ++...+..+|..+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~--~~~~----------~~c~~Cr~---~~~~~~~~~A~~~--- 102 (177)
T cd01712 43 EKVEDLARKLARYSPGHKLVVIIFTFF--VQKEIYGY--GKEK----------YRCILCKR---MMYRIAEKLAEEL--- 102 (177)
T ss_pred HHHHHHHHHHHHhCCCCceEEEeCcHH--HHHHHHHh--CCCc----------cHhHHHHH---HHHHHHHHHHHHc---
Confidence 34444445566777775 4444331 00111111 1111 22223322 2223344445432
Q ss_pred cCCCcEEEEeccCc--ccc-ccccccccc-cCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 504 HNKPGFYLVLGSSN--VDE-GLRGYLTKY-DCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 504 ~~~~g~~lVlgT~N--~sE-~~~Gy~T~~-gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
+-..++.|+.- ..+ .+.+..+.. ......+.|+.+++|.||+++ ++++|++
T Consensus 103 ---g~~~I~~G~~~~D~~~~~~~~l~~~~~~~~~~i~rPl~~~~K~eI~~~----a~~~gl~ 157 (177)
T cd01712 103 ---GADAIVTGESLGQVASQTLENLLVISSGTDLPILRPLIGFDKEEIIGI----ARRIGTY 157 (177)
T ss_pred ---CCCEEEEccCcccchHHHHHhhhhcccCCCCeEECCCCCCCHHHHHHH----HHHcCCc
Confidence 22445555521 211 223333221 122557889999999999999 5668888
No 89
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.55 E-value=2.9e-07 Score=100.98 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
-.++||||||+||+++|.++ .+.+| .. +.++++.....++...
T Consensus 60 yD~iV~lSGGkDSs~la~ll-------~~~~g--l~----------------------------~l~vt~~~~~~~e~~~ 102 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVL-------KKKLG--LN----------------------------PLLVTVDPGWNTELGV 102 (343)
T ss_pred CCEEEECCCCHHHHHHHHHH-------HHHhC--Cc----------------------------eEEEEECCCCCCHHHH
Confidence 45999999999999988775 33342 11 2566666555677788
Q ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCc
Q 004727 429 MLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g 508 (733)
++++.+|+.+|++|+.+.++.- .+...+...+... .+.+... .+.++..++.+|... |
T Consensus 103 ~n~~~~~~~lgvd~~~i~~d~~--~~~~l~~~~~~~~-----------~~pc~~c--~~~~~~~l~~~A~~~-------g 160 (343)
T TIGR03573 103 KNLNNLIKKLGFDLHTITINPE--TFRKLQRAYFKKV-----------GDPEWPQ--DHAIFASVYQVALKF-------N 160 (343)
T ss_pred HHHHHHHHHcCCCeEEEeCCHH--HHHHHHHHHHhcc-----------CCCchhh--hhHHHHHHHHHHHHh-------C
Confidence 9999999999999999887642 2222222211111 1112222 233445566666543 3
Q ss_pred EEEEeccCcccccccccccc
Q 004727 509 FYLVLGSSNVDEGLRGYLTK 528 (733)
Q Consensus 509 ~~lVlgT~N~sE~~~Gy~T~ 528 (733)
.-+|+...|.+|...||.|.
T Consensus 161 i~~Il~G~~~dE~fgGy~~~ 180 (343)
T TIGR03573 161 IPLIIWGENIAEEYGGDSEE 180 (343)
T ss_pred CCEEEeCCCHHHhcCCcccc
Confidence 45778888999999998876
No 90
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.55 E-value=1.5e-07 Score=104.40 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=49.6
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++|++|||+||++++.++ .+.+ |.+ ++++++.... ..++.
T Consensus 6 ~kVvva~SGGlDSsvla~~L-------~e~~--G~e----------------------------Viav~id~Gq-~~~el 47 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWL-------RENY--GCE----------------------------VVCFTADVGQ-GIEEL 47 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHH-------HHhh--CCe----------------------------EEEEEEECCC-ChHHH
Confidence 58999999999999988776 2332 333 4788877654 34689
Q ss_pred HHHHHHHHHhcccc-cccchhHHH
Q 004727 429 MLAKKLADEIGSWH-LDVSIDTVV 451 (733)
Q Consensus 429 ~~A~~lA~~lGi~~-~~i~I~~~~ 451 (733)
+.|+++|+.+|++| +++|+.+.|
T Consensus 48 ~~a~~~A~~lGi~~~~v~dl~~ef 71 (404)
T PLN00200 48 EGLEAKAKASGAKQLVVKDLREEF 71 (404)
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHH
Confidence 99999999999975 777877544
No 91
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.53 E-value=3.8e-07 Score=101.05 Aligned_cols=155 Identities=20% Similarity=0.239 Sum_probs=90.5
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCc-CChHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQET 427 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~-~ss~~t 427 (733)
.+++|++|||+||++++.++ .+. |.+ ++++++.+. ..++.+
T Consensus 173 ~kvlvllSGGiDS~vaa~ll-------~kr---G~~----------------------------V~av~~~~~~~~~~~~ 214 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMM-------MKR---GCR----------------------------VVAVHFFNEPAASEKA 214 (371)
T ss_pred CeEEEEecCCchHHHHHHHH-------HHc---CCe----------------------------EEEEEEeCCCCccHHH
Confidence 57999999999999988876 222 433 467777754 345688
Q ss_pred HHHHHHHHHHhc-----ccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHH-HHHHHHHHHHhhcc
Q 004727 428 RMLAKKLADEIG-----SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR-IRMVLAFMLASLLP 501 (733)
Q Consensus 428 ~~~A~~lA~~lG-----i~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR-~R~~~~~~~A~~~~ 501 (733)
.+.|+.+|+.++ +.+..+|+.++...+... .+ .... .+-.| ++..++..+|..+
T Consensus 215 ~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~~-------~~---------~~~~---cv~cRr~m~~~a~~~A~~~- 274 (371)
T TIGR00342 215 REKVERLANSLNETGGSVKLYVFDFTDVQEEIIHI-------IP---------EGYT---CVLCRRMMYKAASKVAEKE- 274 (371)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHhc-------CC---------CCce---eHhHHHHHHHHHHHHHHHc-
Confidence 899999999984 477888888765432211 01 0111 12222 2223344445432
Q ss_pred cccCCCcEEEEeccCccccc----ccccccc-ccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccchhhhcCCCCcc
Q 004727 502 WVHNKPGFYLVLGSSNVDEG----LRGYLTK-YDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAE 574 (733)
Q Consensus 502 ~~~~~~g~~lVlgT~N~sE~----~~Gy~T~-~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~~i~~~~psae 574 (733)
+-..++.|. |.++. +.+..+. .+.....+.|+.+++|.||+++ ++++|.. ++...|+..|
T Consensus 275 -----g~~~I~tG~-~l~d~asqtl~nl~~i~~~~~~~I~rPLi~~~K~EIi~~----a~~iG~~---~~s~~~~~~c 339 (371)
T TIGR00342 275 -----GCLAIVTGE-SLGQVASQTLENLRVIQAVSNTPILRPLIGMDKEEIIEL----AKEIGTY---EISIEPHEDC 339 (371)
T ss_pred -----CCCEEEEcc-ChHhhhccHHHHHHHHhccCCCCEEeCCCCCCHHHHHHH----HHHhCCc---ceeecCCCce
Confidence 223455554 23322 2232221 1223557899999999999999 4556632 3444555544
No 92
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.47 E-value=4.6e-07 Score=100.27 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=84.2
Q ss_pred eeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHH
Q 004727 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (733)
Q Consensus 351 ~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~ 430 (733)
++|++|||+||++++.++ .+.. |.+ ++++++...... ...+.
T Consensus 1 Vvva~SGGlDSsvll~~l-------~e~~--~~e----------------------------V~av~~d~Gq~~-~~~e~ 42 (385)
T cd01999 1 VVLAYSGGLDTSVILKWL-------KEKG--GYE----------------------------VIAVTADVGQPE-EEIEA 42 (385)
T ss_pred CEEEecCCHHHHHHHHHH-------HHhC--CCe----------------------------EEEEEEECCCcc-hhHHH
Confidence 589999999999988876 2331 112 467777665433 33589
Q ss_pred HHHHHHHhccc-ccccchhHHHHH--HHHHHHhhhCCCCceeecCCccccccchh-hHHHHHHHHHHHHHHhhcccccCC
Q 004727 431 AKKLADEIGSW-HLDVSIDTVVSA--FLSLFQTLTGKRPCYKVDGGSNVENLGLQ-NIQARIRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 431 A~~lA~~lGi~-~~~i~I~~~~~~--~~~~~~~~~g~~p~~~~~gg~~~~~~a~~-NiqaR~R~~~~~~~A~~~~~~~~~ 506 (733)
|+++|+.+|+. |+++|+++.+.. +...+.. ..+ + .|......+++ ++.+ ..+..+|+..
T Consensus 43 a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~a---n~~-~---~g~y~l~t~l~R~~i~----~~l~~~A~~~------ 105 (385)
T cd01999 43 IEEKALKLGAKKHVVVDLREEFVEDYIFPAIQA---NAL-Y---EGTYPLGTALARPLIA----KALVEVAKEE------ 105 (385)
T ss_pred HHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHh---Ccc-c---cCCCcCCcHhHHHHHH----HHHHHHHHHc------
Confidence 99999999996 999999875542 2222221 100 0 01000011111 1111 1122334322
Q ss_pred CcEEEEeccCc----cccccccccccccCCCCCCCCCCCC---cHHhHHHHHHHHHhhcCCc
Q 004727 507 PGFYLVLGSSN----VDEGLRGYLTKYDCSSADINPIGSI---SKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 507 ~g~~lVlgT~N----~sE~~~Gy~T~~gd~~~~i~Pi~~l---~K~~vr~l~~~~~~~~g~p 561 (733)
+-..+.-|+.- ..+...|..... -..+.++|+.++ +|.+++++ ++.+|+|
T Consensus 106 Ga~~VA~G~t~~gnDq~rf~~~~~al~-pel~ViaPlre~~~~sr~ev~~~----A~~~Gip 162 (385)
T cd01999 106 GADAVAHGCTGKGNDQVRFELAFYALN-PDLKIIAPWRDWEFLSREEEIEY----AEEHGIP 162 (385)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHhhC-CCCEEEcchhhhhcCCHHHHHHH----HHHcCCC
Confidence 12334444431 122334443332 135689999777 99999999 5668887
No 93
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.44 E-value=5.4e-07 Score=100.01 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=48.8
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
+++|++|||+||++++.++ .+. |.+ ++++++.+... ..+.+
T Consensus 1 kVvla~SGGlDSsvll~~l-------~e~---g~~----------------------------V~av~id~Gq~-~~e~~ 41 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWL-------REK---GYE----------------------------VIAYTADVGQP-EEDID 41 (394)
T ss_pred CEEEEEcCCHHHHHHHHHH-------HHc---CCE----------------------------EEEEEEecCCC-hHHHH
Confidence 4899999999999988876 222 333 46777765433 67899
Q ss_pred HHHHHHHHhcc-cccccchhHHH
Q 004727 430 LAKKLADEIGS-WHLDVSIDTVV 451 (733)
Q Consensus 430 ~A~~lA~~lGi-~~~~i~I~~~~ 451 (733)
.|+++|+.+|+ +|+++|+++.+
T Consensus 42 ~a~~~a~~lGi~~~~viD~~~ef 64 (394)
T TIGR00032 42 AIPEKALEYGAENHYTIDAREEF 64 (394)
T ss_pred HHHHHHHHhCCCeEEEEeCHHHH
Confidence 99999999998 79999997533
No 94
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.43 E-value=6.9e-07 Score=98.71 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=86.0
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
++++++||||+||+++|.++ .+. |.+ +.++++. .++.+.
T Consensus 181 gkvlvllSGGiDSpVAa~ll-------~kr---G~~----------------------------V~~v~f~---~g~~~~ 219 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLM-------MKR---GVE----------------------------VIPVHIY---MGEKTL 219 (381)
T ss_pred CcEEEEEeCChHHHHHHHHH-------HHc---CCe----------------------------EEEEEEE---eCHHHH
Confidence 57999999999999988876 222 444 4677773 346789
Q ss_pred HHHHHHHHHhccc-------ccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcc
Q 004727 429 MLAKKLADEIGSW-------HLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLP 501 (733)
Q Consensus 429 ~~A~~lA~~lGi~-------~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~ 501 (733)
+.++++|+.|+.+ +++++.... ..+...+.+.. + .+ ..+.+++ |.++-++..+|+..
T Consensus 220 e~v~~la~~L~~~~~~~~i~l~~v~~~~~-~~v~~~i~~~~---~-----~~---~~C~~Ck---r~m~r~a~~iA~~~- 283 (381)
T PRK08384 220 EKVRKIWNQLKKYHYGGKAELIVVKPQER-ERIIQKLKELK---K-----EN---YTCVFCK---FMMVKHADRIAKEF- 283 (381)
T ss_pred HHHHHHHHHhcccccCCcceEEEEChHHH-HHHHHHHHHhc---c-----CC---CchHHHH---HHHHHHHHHHHHHc-
Confidence 9999999999954 555655321 12333332210 1 01 1233333 44555677777654
Q ss_pred cccCCCcEEEEeccCcc-c----ccccc-ccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcC
Q 004727 502 WVHNKPGFYLVLGSSNV-D----EGLRG-YLTKYDCSSADINPIGSISKQDLRTFLRWAATHLG 559 (733)
Q Consensus 502 ~~~~~~g~~lVlgT~N~-s----E~~~G-y~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g 559 (733)
+..++.||+. + ..+.. |.+..+...-.+-||.+++|.||++++ ++.|
T Consensus 284 -------g~~~IaTGhslgqvaSQtl~Nl~~i~~~~~lpilRPLi~~dK~EIi~~A----r~iG 336 (381)
T PRK08384 284 -------GAKGIVMGDSLGQVASQTLENMYIVSQASDLPIYRPLIGMDKEEIVAIA----KTIG 336 (381)
T ss_pred -------CCCEEEEcccchhHHHHHHHHHHHHhccCCCcEEeeCCCCCHHHHHHHH----HHcC
Confidence 3345656553 1 11111 222333334578999999999999994 5566
No 95
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.38 E-value=1.6e-06 Score=84.19 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=51.7
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
.++|++|||.||++++.|+ .++. .+. .-+..+++.+....+++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~-------~~~~---~~~-------------------------~~~~~v~~dtg~~~~~~~~ 45 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLA-------LKAL---PEL-------------------------KPVPVIFLDTGYEFPETYE 45 (173)
T ss_pred CeEEEecCChHHHHHHHHH-------HHhc---ccc-------------------------cCceEEEeCCCCCCHHHHH
Confidence 3789999999999998887 2321 110 0046788887777889999
Q ss_pred HHHHHHHHhcccccccchhHHH
Q 004727 430 LAKKLADEIGSWHLDVSIDTVV 451 (733)
Q Consensus 430 ~A~~lA~~lGi~~~~i~I~~~~ 451 (733)
.++++++.+|+++..+..+...
T Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~ 67 (173)
T cd01713 46 FVDRVAERYGLPLVVVRPPDSP 67 (173)
T ss_pred HHHHHHHHhCCCeEEECCCccH
Confidence 9999999999999999887543
No 96
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.36 E-value=1.4e-07 Score=112.13 Aligned_cols=75 Identities=21% Similarity=0.185 Sum_probs=66.9
Q ss_pred cccchhhHhH-HHHHhhcCCCChhHHHHHHHhhhheeeeccceeeecCccccccCCCCCCCccchhhhhhcccCcccccc
Q 004727 607 FHCGPVTMFK-NLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRK 685 (733)
Q Consensus 607 ~~~~p~~~~~-~l~~~~~~~~~~~~i~~~v~~f~~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~~ 685 (733)
+.+|||++++ .|.+.|..+++|++|+.+++++|+.| |||||+. ||++|++.|++++.+..+|+|++ ..|.+||++
T Consensus 562 d~lgpY~~~D~~l~~~~~~~~~~~~i~~~~~~~f~~~--~~~~~~~-~~~~~~~~~~~~~v~~~~~~f~~-~~~~~qfKR 637 (679)
T PRK02628 562 DIIGPYELQDFFLYYFLRYGFRPSKIAFLAWHAWKDA--ERGAWPG-FPEDKRPAYDLATIKKWLEVFLR-RFFSSQFKR 637 (679)
T ss_pred hccCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcc--ccccCCC-CcchhcccCCHHHHHHHHHHHcc-hhchHhhCc
Confidence 4589999999 55567788999999999999999988 9999998 99999999999999999999997 467888874
No 97
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.12 E-value=7.7e-06 Score=86.24 Aligned_cols=122 Identities=25% Similarity=0.315 Sum_probs=69.6
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
..+.+.||||+||+++|+++ .+.. ...+ . .+++..+ .....+.
T Consensus 16 ~~v~~~LSGGlDSs~va~~~-------~~~~---~~~~---------------~----------~~~~~~~--~~~~~e~ 58 (269)
T cd01991 16 VPVGVLLSGGLDSSLVAALA-------ARLL---PEPV---------------K----------TFSIGFG--FEGSDER 58 (269)
T ss_pred CceEEeecccHHHHHHHHHH-------HHhh---CCCC---------------c----------eEEEeeC--CCCCChH
Confidence 56889999999999999887 2221 1111 0 1344443 3334458
Q ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCc
Q 004727 429 MLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g 508 (733)
..|+.+|+.+|++|++++++.. .+...+...... ..+++...|.. ....++..|.. .|
T Consensus 59 ~~a~~~a~~l~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~p~~~~~~~---~~~~l~~~a~~-------~~ 116 (269)
T cd01991 59 EYARRVAEHLGTEHHEVEFTPA--DLLAALPDVIWE----------LDEPFADSSAI---PLYLLSRLARK-------HG 116 (269)
T ss_pred HHHHHHHHHhCCcceEEEcCHH--HHHHHHHHHHHH----------hCCCCCCcHHH---HHHHHHHHHHH-------hC
Confidence 9999999999999999988752 233333221000 01223333332 22223333322 23
Q ss_pred EEEEeccCccccccccccccc
Q 004727 509 FYLVLGSSNVDEGLRGYLTKY 529 (733)
Q Consensus 509 ~~lVlgT~N~sE~~~Gy~T~~ 529 (733)
...+|.....||..-||....
T Consensus 117 ~~v~l~G~g~Delf~Gy~~~~ 137 (269)
T cd01991 117 IKVVLSGEGADELFGGYPRYR 137 (269)
T ss_pred CEEEEecCCccccccChHHHH
Confidence 246666666889988986443
No 98
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.04 E-value=1.1e-05 Score=87.36 Aligned_cols=141 Identities=27% Similarity=0.343 Sum_probs=82.5
Q ss_pred CcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhh
Q 004727 334 GPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIF 413 (733)
Q Consensus 334 ~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 413 (733)
.....++++|-... .+=|-||||+|||++|++++ +.+.+ .+ + .+ +. + +
T Consensus 213 ~~~~aV~KRLM~d~--p~GvLLSGGLDSSLvAsia~-------R~lk~-~~-~----~~--~~-----~----------l 260 (543)
T KOG0571|consen 213 TLEKAVRKRLMTDV--PFGVLLSGGLDSSLVASIAA-------RELKK-AQ-A----AR--GS-----K----------L 260 (543)
T ss_pred HHHHHHHHHhhccC--ceeEEeeCCchHHHHHHHHH-------HHHHH-hh-h----hc--CC-----C----------c
Confidence 33444445554433 34456999999999999983 33321 00 0 00 00 0 4
Q ss_pred eeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHH
Q 004727 414 YTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLA 493 (733)
Q Consensus 414 ~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~ 493 (733)
++...+-++|+ ++..|+++|+.||+.|+++-++. +.-++.+.++.-+...|+ + .-|+|-.-|
T Consensus 261 hsFaIGle~SP--DL~aarkVAd~igt~Hhe~~ft~--qegidal~eVI~hLETYD---------v--ttIRastpm--- 322 (543)
T KOG0571|consen 261 HSFAIGLEDSP--DLLAARKVADFIGTIHHEHTFTI--QEGIDALDEVIYHLETYD---------V--TTIRASTPM--- 322 (543)
T ss_pred eEEEecCCCCh--hHHHHHHHHHHhCCcceEEEEcH--HHHHHHHHHHheeeeccc---------c--ceEecCCch---
Confidence 66655555654 58999999999999998876653 455566666544433332 2 234554444
Q ss_pred HHHHhhcccccCCCcEEEEeccCcccccccccccc
Q 004727 494 FMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528 (733)
Q Consensus 494 ~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~ 528 (733)
|++++.. + +.|-.+||+.---||..-||..+
T Consensus 323 yLlsr~I---k-k~gvkmvlSGEGsDEifggYlYf 353 (543)
T KOG0571|consen 323 YLLSRKI---K-KLGVKMVLSGEGSDEIFGGYLYF 353 (543)
T ss_pred HHHHHHH---H-hcceEEEEecCCchhhhcceeee
Confidence 4444432 1 23455667666677888888755
No 99
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.04 E-value=4.6e-06 Score=90.74 Aligned_cols=182 Identities=20% Similarity=0.244 Sum_probs=98.7
Q ss_pred hhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheee
Q 004727 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (733)
Q Consensus 337 ~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v 416 (733)
.|+++++ |..++++.+|||+|||++++|+ .+|+ |++++ +++
T Consensus 222 ~~i~k~v---G~~~Vl~~vSGgvdStV~a~Ll-------~~al--g~~R~---------------------------~ai 262 (552)
T KOG1622|consen 222 NEIRKWV---GDYKVLVAVSGGVDSTVCAALL-------RRAL--GPDRV---------------------------HAI 262 (552)
T ss_pred HHHHHHh---cccceEEEecCCchHHHHHHHH-------HHhh--CCCce---------------------------EEE
Confidence 4555555 4678999999999999999998 6777 45543 555
Q ss_pred eccCcCChHHHHHHHH-HHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHH-HHHH
Q 004727 417 FMGSENSSQETRMLAK-KLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRM-VLAF 494 (733)
Q Consensus 417 ~m~~~~ss~~t~~~A~-~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~-~~~~ 494 (733)
.....+-...+-+..+ .|.+ ||++...+|-.. .+.+.+..++...-+-+..|.... .++ .-.++++-- ...+
T Consensus 263 ~vdNG~mrk~Ea~~V~~tl~~-lgi~i~v~~as~---~f~s~L~~~~dPE~KRkiIG~tfi-kv~-~~~~~~l~~k~~~~ 336 (552)
T KOG1622|consen 263 HVDNGFMRKKEAEQVEKTLVY-LGIPITVVDASE---TFLSKLKGVTDPEEKRKIIGRTFI-KVF-DPVASELNKKHGEK 336 (552)
T ss_pred EecccchhhhHHHHHHHHHHH-cCCceEEeechH---HHHHhhcccCCHHHhceeccccee-eeC-cHHHHHhhhccCcc
Confidence 5443332222223333 3444 999999998774 445556555433333333222210 010 011111110 0000
Q ss_pred --HHH--hhcccccCCCcEEEEeccCcccc-----ccccccccc-cCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCccch
Q 004727 495 --MLA--SLLPWVHNKPGFYLVLGSSNVDE-----GLRGYLTKY-DCSSADINPIGSISKQDLRTFLRWAATHLGYSSLA 564 (733)
Q Consensus 495 --~~A--~~~~~~~~~~g~~lVlgT~N~sE-----~~~Gy~T~~-gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p~l~ 564 (733)
++| .+.||+-. ...+.|++ .+| ...|...+. --....+.|+.++.|.|||.+ .+.+|+| +
T Consensus 337 ~~flaQgtL~Pd~ie---S~s~~g~~-~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEvr~l----gk~lGlp--~ 406 (552)
T KOG1622|consen 337 ESFLAQGTLRPDLIE---SASVYGSG-HAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEVREL----GKDLGLP--E 406 (552)
T ss_pred ceeeecccccchhhh---hccccCCc-hhhhhhcccccchHHHHHHHhcccCchhHHHHHHHHHHh----hhhcCCc--h
Confidence 111 22344422 22445554 222 111111110 022468899999999999999 7889988 8
Q ss_pred hhhcCCCCc
Q 004727 565 EIEAAPPTA 573 (733)
Q Consensus 565 ~i~~~~psa 573 (733)
.++.+.|-+
T Consensus 407 ~Lv~rhPfp 415 (552)
T KOG1622|consen 407 SLVPRHPFP 415 (552)
T ss_pred hhhccCCCC
Confidence 888888876
No 100
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.04 E-value=1.1e-05 Score=79.40 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=37.5
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
+++|++|||+||++++.++ .+. |.+ ++++++.....+..+.+
T Consensus 1 kvlv~~SGG~DS~~~~~~~-------~~~---~~~----------------------------v~~~~~~~~~~~~~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWA-------KKE---GYE----------------------------VHALSFDYGQRHAKEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHH-------HHc---CCc----------------------------EEEEEEECCCCChhHHH
Confidence 4789999999999988776 221 322 35677764444445668
Q ss_pred HHHHHHHHhc
Q 004727 430 LAKKLADEIG 439 (733)
Q Consensus 430 ~A~~lA~~lG 439 (733)
.++++|+.+|
T Consensus 43 ~~~~~~~~~g 52 (169)
T cd01995 43 AAKLIAEKLG 52 (169)
T ss_pred HHHHHHHHHC
Confidence 9999999999
No 101
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.98 E-value=1.6e-05 Score=83.91 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=82.3
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHH
Q 004727 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t 427 (733)
..+++|++|||.||++++.++..+ .+..+.+.+ +.+++......+ .+
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l----~~~~~~~~~----------------------------l~av~vd~g~~~-~~ 75 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNL----QKRAPINFE----------------------------LVAVNLDQKQPG-FP 75 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHH----HHhCCCCeE----------------------------EEEEEecCCCCC-CC
Confidence 358999999999999888776321 011000000 456665543322 12
Q ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCC
Q 004727 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (733)
Q Consensus 428 ~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~ 507 (733)
.+.++++|+.+|++|++++++.. .... .. .+. + ...+..-.+.|-..++.+|... +
T Consensus 76 ~~~~~~~~~~lgI~~~v~~~~~~-~~~~---~~----~~~-----~-----~~~c~~c~~~R~~~l~~~a~~~------g 131 (258)
T PRK10696 76 EHVLPEYLESLGVPYHIEEQDTY-SIVK---EK----IPE-----G-----KTTCSLCSRLRRGILYRTAREL------G 131 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEecch-hhhh---hh----hcc-----C-----CChhHHHHHHHHHHHHHHHHHc------C
Confidence 23578999999999999887531 1100 00 010 1 1123334455665666666543 1
Q ss_pred cEEEEeccCcccccc--------cc--cccccc-----C-CCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 508 GFYLVLGSSNVDEGL--------RG--YLTKYD-----C-SSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 508 g~~lVlgT~N~sE~~--------~G--y~T~~g-----d-~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
-..+++|. |.++.+ .| ..++.. . ....+-|+..++|.||+++ ++..|+|
T Consensus 132 ~~~Ia~GH-~~dD~~Et~l~nl~rg~~l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y----~~~~~lp 196 (258)
T PRK10696 132 ATKIALGH-HRDDILETLFLNMFYGGKLKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKF----AEAKEFP 196 (258)
T ss_pred CCEEEEcC-chHHHHHHHHHHHHhCCcccccCCeeecCCCceeEEecCccCCHHHHHHH----HHHcCCC
Confidence 13344433 343321 11 111110 0 1236899999999999999 4557888
No 102
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.90 E-value=2.9e-05 Score=77.50 Aligned_cols=142 Identities=24% Similarity=0.326 Sum_probs=74.1
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeec--cCcCChHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM--GSENSSQET 427 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m--~~~~ss~~t 427 (733)
+++||+|||.||.+++.++.. -......+ +.+++. +....|...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~-------~~~~~~~~---------------------------~~~~~vdh~~~~~s~~~ 46 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKE-------LRRRNGIK---------------------------LIAVHVDHGLREESDEE 46 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHH-------HHTTTTTE---------------------------EEEEEEE-STSCCHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH-------HHHhcCCC---------------------------eEEEEEecCCCcccchh
Confidence 589999999999987777622 11000000 344444 344567778
Q ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHH-HHHHHHHHHHhhcccccCC
Q 004727 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR-IRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 428 ~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR-~R~~~~~~~A~~~~~~~~~ 506 (733)
.+..+++|+.+|+++.+..++. .. .+ +.+ .+. .+| .|..+++.+|...
T Consensus 47 ~~~v~~~~~~~~i~~~~~~~~~---------~~----~~------~~~-----~e~-~aR~~Ry~~l~~~a~~~------ 95 (182)
T PF01171_consen 47 AEFVEEICEQLGIPLYIVRIDE---------DR----KK------GSN-----IEE-CARELRYQFLREIAKEE------ 95 (182)
T ss_dssp HHHHHHHHHHTT-EEEEEE--C---------HC----CT------TST-----CHH-HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHhcCCceEEEEeee---------ee----cc------cCC-----HHH-HHHHHHHHHHHHhhhcc------
Confidence 8999999999999999999874 00 00 011 222 233 5555666666432
Q ss_pred CcEEEEeccCccc---cc-----ccc--cccccc-------CCCCCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 507 PGFYLVLGSSNVD---EG-----LRG--YLTKYD-------CSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 507 ~g~~lVlgT~N~s---E~-----~~G--y~T~~g-------d~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
+-..|++|. |.| |. ..| ..++.| .+...+=|+-.++|.||++++ +..|+|
T Consensus 96 g~~~i~~GH-h~dD~~ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~~k~ei~~~~----~~~~i~ 162 (182)
T PF01171_consen 96 GCNKIALGH-HLDDQAETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYVSKDEIRAYA----KENGIP 162 (182)
T ss_dssp T-CEEE----BHHHHHHHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS-HHHHHHHH----HHTT-S
T ss_pred cccceeecC-cCCccHHHHHHHHHHhccchhhccccccccccCcccCCcchhCCHHHHHHHH----HHCCCc
Confidence 223454443 233 31 112 111111 124467799999999999984 557887
No 103
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.87 E-value=5.1e-05 Score=76.53 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=44.4
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeecc-CcCChHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-SENSSQET 427 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~-~~~ss~~t 427 (733)
.++++-||||+||.++|.++ ...|-+ |.+|++- ..++++..
T Consensus 4 gk~l~LlSGGiDSpVAa~lm----------~krG~~----------------------------V~~l~f~~~~~~~~~~ 45 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLM----------MKRGCE----------------------------VIALHFDSPPFTGEKA 45 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHH----------HCBT-E----------------------------EEEEEEE-TTTSSCCC
T ss_pred ceEEEEecCCccHHHHHHHH----------HHCCCE----------------------------EEEEEEECCCCCCHHH
Confidence 57899999999999977775 222433 5677775 23445555
Q ss_pred HHHHHHHHHHh-------cccccccchhHHHHHHH
Q 004727 428 RMLAKKLADEI-------GSWHLDVSIDTVVSAFL 455 (733)
Q Consensus 428 ~~~A~~lA~~l-------Gi~~~~i~I~~~~~~~~ 455 (733)
.+.++++++.| .++++.+|+.+++..+.
T Consensus 46 ~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~ 80 (197)
T PF02568_consen 46 REKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEIL 80 (197)
T ss_dssp HHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHH
Confidence 56666666665 36677889888765543
No 104
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=97.85 E-value=2.6e-05 Score=89.24 Aligned_cols=66 Identities=30% Similarity=0.357 Sum_probs=43.8
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
..+.+.||||+||+++|+++. +.. +...+ . .+++.++. ...-.+.
T Consensus 254 ~~vg~~LSGGlDSs~iaa~a~-------~~~--~~~~~---------------~----------~~t~~~~~-~~~~~E~ 298 (467)
T TIGR01536 254 VPVGVLLSGGLDSSLVAAIAR-------REA--PRGPV---------------H----------TFSIGFEG-SPDFDES 298 (467)
T ss_pred CceEEEecCChhHHHHHHHHH-------Hhc--CCCCc---------------e----------EEEEecCC-CCCCChH
Confidence 467888999999999998862 221 10110 0 13444442 1223446
Q ss_pred HHHHHHHHHhcccccccchhH
Q 004727 429 MLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~ 449 (733)
..|+++|+.+|++|+++++++
T Consensus 299 ~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 299 PYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred HHHHHHHHHhCCcCeEEECCH
Confidence 799999999999999999864
No 105
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=97.84 E-value=2.2e-05 Score=81.40 Aligned_cols=74 Identities=30% Similarity=0.399 Sum_probs=49.1
Q ss_pred hhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheee
Q 004727 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (733)
Q Consensus 337 ~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v 416 (733)
..+.+.++ ....+.+.||||+||+++|+++ .+.. + .. +.++
T Consensus 8 ~av~~rl~--~~~~i~~~LSGGlDSs~i~~~~-------~~~~--~-~~---------------------------~~~~ 48 (255)
T PF00733_consen 8 EAVARRLR--SDKPIGILLSGGLDSSAIAALA-------ARQG--G-PP---------------------------IKTF 48 (255)
T ss_dssp HHHHHHCG--CTSEEEEE--SSHHHHHHHHHH-------HHTC--C-SE---------------------------EEEE
T ss_pred HHHHHHHh--cCCCEEEECCCChhHHHHHHHH-------HHhh--C-Cc---------------------------eeEE
Confidence 33445555 4568899999999999999887 2211 1 11 4566
Q ss_pred eccCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004727 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 417 ~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
+.........+...|+++|+.+|++|+.++++.
T Consensus 49 t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~ 81 (255)
T PF00733_consen 49 TIGFEDDDYDEREYARKVARHLGLEHHEIELDP 81 (255)
T ss_dssp EEECSSCC--HHHHHHHHHHHHT-EEEEEEE-H
T ss_pred EEEcCCCcchhHHHHHHHhcccccccceeeech
Confidence 666555555588999999999999999988876
No 106
>PRK08576 hypothetical protein; Provisional
Probab=97.83 E-value=8e-05 Score=83.71 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=51.9
Q ss_pred hHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeecc
Q 004727 340 WDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG 419 (733)
Q Consensus 340 ~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~ 419 (733)
.+++++.+..+++|++|||.||++++.++ .++.+ + +.++++.
T Consensus 226 ~~~Lr~~~~~rVvVafSGGKDStvLL~La-------~k~~~---~----------------------------V~aV~iD 267 (438)
T PRK08576 226 IKFLRKFEEWTVIVPWSGGKDSTAALLLA-------KKAFG---D----------------------------VTAVYVD 267 (438)
T ss_pred HHHHHHcCCCCEEEEEcChHHHHHHHHHH-------HHhCC---C----------------------------CEEEEeC
Confidence 34555555558999999999999988776 33321 1 3677887
Q ss_pred CcCChHHHHHHHHHHHHHhcccccc
Q 004727 420 SENSSQETRMLAKKLADEIGSWHLD 444 (733)
Q Consensus 420 ~~~ss~~t~~~A~~lA~~lGi~~~~ 444 (733)
+....++|.+.++++|+.+|++++.
T Consensus 268 TG~e~pet~e~~~~lae~LGI~lii 292 (438)
T PRK08576 268 TGYEMPLTDEYVEKVAEKLGVDLIR 292 (438)
T ss_pred CCCCChHHHHHHHHHHHHcCCCEEE
Confidence 7777788999999999999999987
No 107
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.79 E-value=0.0001 Score=86.43 Aligned_cols=90 Identities=36% Similarity=0.376 Sum_probs=55.3
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004727 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+++...+...++.+|+. -..+-+.||||+|||++|+|+. +...++. + ++ .. ...+
T Consensus 220 ~~lr~~L~~AV~~rl~s--dvpvGv~LSGGLDSSlIaala~-------~~~~~~~---~-~~--~~----~~~~------ 274 (586)
T PTZ00077 220 EEIREALEAAVRKRLMG--DVPFGLFLSGGLDSSIVAAIVA-------KLIKNGE---I-DL--SK----RGMP------ 274 (586)
T ss_pred HHHHHHHHHHHHHHhcC--CCceEEEecCCchHHHHHHHHH-------Hhhcccc---c-cc--cc----ccCC------
Confidence 34555555556666653 2467788999999999999973 2221000 0 00 00 0000
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchh
Q 004727 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~ 448 (733)
-++|.+.+...+ .+...|+++|+.||..|+++.++
T Consensus 275 ---~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~~i~~~ 309 (586)
T PTZ00077 275 ---KLHSFCIGLEGS--PDLKAARKVAEYLGTEHHEFTFT 309 (586)
T ss_pred ---CceEEEcCCCCC--chHHHHHHHHHHhCCcCcEEEEC
Confidence 046666665443 46889999999999999888664
No 108
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.78 E-value=0.00011 Score=85.97 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=79.1
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004727 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+++...+...++.+|.. -..+.+.||||+|||++|+++. +.+++.... .. +-+
T Consensus 208 ~~lr~~L~~aV~~rl~s--dvpvgv~LSGGLDSSlIaala~-------~~~~~~~~~--------~~----~~~------ 260 (578)
T PLN02549 208 LVLREAFEKAVIKRLMT--DVPFGVLLSGGLDSSLVASIAA-------RHLAETKAA--------RQ----WGQ------ 260 (578)
T ss_pred HHHHHHHHHHHHHHhcc--CCceeEeecCCccHHHHHHHHH-------Hhhhhcccc--------cc----cCC------
Confidence 34444444455555543 2357788999999999999873 222110000 00 000
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHH
Q 004727 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~ 488 (733)
-+++.+.+...+ .+...|+++|+.||..|+++.++. +.+.+.+.++.-+...| ++.. +.+
T Consensus 261 ---~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~ev~~~~--~e~~~~l~~~i~~le~~--------dp~~---~~~-- 320 (578)
T PLN02549 261 ---QLHSFCVGLEGS--PDLKAAREVADYLGTVHHEFHFTV--QEGIDAIEDVIYHLETY--------DVTT---IRA-- 320 (578)
T ss_pred ---CceEEecCCCCC--CHHHHHHHHHHHhCCCCeEEEECh--HHHHHHHHHHHHHhcCC--------CCcc---chh--
Confidence 035666554443 367899999999999999987753 33333333322111000 0111 111
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeccCcccccccccccc
Q 004727 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528 (733)
Q Consensus 489 R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~T~ 528 (733)
.+-.|++++.. +. .|...||....-||..-||.-.
T Consensus 321 -s~p~yll~r~a---~~-~gvkVvLsGeGaDElFgGY~~~ 355 (578)
T PLN02549 321 -STPMFLMSRKI---KS-LGVKMVLSGEGSDEIFGGYLYF 355 (578)
T ss_pred -HHHHHHHHHHH---Hh-cCCEEEEecCchHhhhcChHhh
Confidence 12234444421 22 2345677777788988899644
No 109
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.72 E-value=0.00014 Score=84.69 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=53.5
Q ss_pred hhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHH
Q 004727 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (733)
Q Consensus 330 ei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~ 409 (733)
++...+...++.+|+. -..+-+-||||+|||++|+++. +..+ +.+. ..+....+-|
T Consensus 211 ~lr~~L~~aV~~rl~s--dvpvGv~LSGGLDSSlIaala~-------~~~~---~~~~-----~~~~~~~~~~------- 266 (554)
T PRK09431 211 ELRDALEAAVKKRLMS--DVPYGVLLSGGLDSSLISAIAK-------KYAA---RRIE-----DDERSEAWWP------- 266 (554)
T ss_pred HHHHHHHHHHHHHhcC--CCceEEEcCCCccHHHHHHHHH-------Hhhc---cccc-----ccccccccCC-------
Confidence 3444444445555543 2456788999999999999873 2211 0000 0000000000
Q ss_pred hhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004727 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 410 ~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
-++|.+.+...+ .+...|+++|+.||..|+++.++.
T Consensus 267 --~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~t~ 302 (554)
T PRK09431 267 --QLHSFAVGLEGS--PDLKAAREVADHLGTVHHEIHFTV 302 (554)
T ss_pred --CceEEEEeCCCC--ChHHHHHHHHHHhCCccEEEEeCH
Confidence 045655554443 368999999999999999998853
No 110
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.64 E-value=0.00032 Score=75.55 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=51.1
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
.+++|++|||.||++++.|+ .+++..+ . .| +..++..+....+++.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La-------~ka~~~~--~---------------~~----------~~vl~iDTG~~FpEt~ 73 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLA-------RKAFYPG--K---------------LP----------FPLLHVDTGWKFPEMI 73 (301)
T ss_pred CCEEEEecCCHHHHHHHHHH-------HHhhccc--C---------------CC----------eeEEEEeCCCCCHHHH
Confidence 67999999999999999887 4444210 0 01 3566777766678999
Q ss_pred HHHHHHHHHhcccccccchhH
Q 004727 429 MLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~ 449 (733)
+.+.++|+.+|+++.++..++
T Consensus 74 ef~d~~a~~~gl~l~v~~~~~ 94 (301)
T PRK05253 74 EFRDRRAKELGLELIVHSNPE 94 (301)
T ss_pred HHHHHHHHHhCCCEEEEeChH
Confidence 999999999999998886653
No 111
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.64 E-value=0.00014 Score=86.39 Aligned_cols=118 Identities=25% Similarity=0.270 Sum_probs=68.1
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
..+.+.||||+|||++|++++ +. +... +.|+++....+...+.
T Consensus 259 ~~vg~~LSGGlDSs~Iaa~~~-------~~---~~~~---------------------------i~t~s~~~~~~~~dE~ 301 (628)
T TIGR03108 259 VPLGAFLSGGVDSSAVVALMA-------GL---SDTP---------------------------VNTCSIAFDDPAFDES 301 (628)
T ss_pred CcceEeecCCccHHHHHHHHH-------Hh---cCCC---------------------------CcEEEEecCCCCCChH
Confidence 356677999999999988762 21 1111 2444444333334677
Q ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCCCc
Q 004727 429 MLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~~g 508 (733)
..|+.+|+.+|.+|+++.+++.. .+.+..+.... .+++...+.-+... +...|. .+
T Consensus 302 ~~A~~vA~~~g~~h~~~~~~~~~---~~~~~~~~~~~----------~~P~~~~~~~~~~~---~~~~a~--------~~ 357 (628)
T TIGR03108 302 AYARQVAERYGTNHRVETVDPDD---FSLVDRLAGLY----------DEPFADSSALPTYR---VCELAR--------KR 357 (628)
T ss_pred HHHHHHHHHhCCCCeEEecCHHH---HHHHHHHHHHh----------CCCCCCchHHHHHH---HHHHHH--------CC
Confidence 89999999999999999887532 12222211100 01222233322211 122221 13
Q ss_pred EEEEeccCccccccccccc
Q 004727 509 FYLVLGSSNVDEGLRGYLT 527 (733)
Q Consensus 509 ~~lVlgT~N~sE~~~Gy~T 527 (733)
..++|+.-..||..-||..
T Consensus 358 ~kV~LsG~GgDElf~GY~~ 376 (628)
T TIGR03108 358 VTVALSGDGGDELFAGYRR 376 (628)
T ss_pred CCEEEeccchhhcccCcHH
Confidence 4577888888999999964
No 112
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.60 E-value=3.6e-05 Score=77.73 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=42.3
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCc---CC---
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE---NS--- 423 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~---~s--- 423 (733)
++++++|||.||++++.++ .+ +|.+ | .++++-+. .+
T Consensus 1 kv~v~~SGGkDS~~al~~a-------~~---~G~~-v---------------------------~~l~~~~~~~~~~~~~ 42 (194)
T cd01994 1 KVVALISGGKDSCYALYRA-------LE---EGHE-V---------------------------VALLNLTPEEGSSMMY 42 (194)
T ss_pred CEEEEecCCHHHHHHHHHH-------HH---cCCE-E---------------------------EEEEEEecCCCCcccc
Confidence 4789999999999988776 23 2544 2 23332211 11
Q ss_pred hHHHHHHHHHHHHHhcccccccchh
Q 004727 424 SQETRMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 424 s~~t~~~A~~lA~~lGi~~~~i~I~ 448 (733)
+....+.++.+|+.+|++|..++++
T Consensus 43 h~~~~e~~~~~A~~lgipl~~i~~~ 67 (194)
T cd01994 43 HTVNHELLELQAEAMGIPLIRIEIS 67 (194)
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCC
Confidence 2336789999999999999999884
No 113
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.59 E-value=0.00013 Score=85.80 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=52.3
Q ss_pred hhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHh
Q 004727 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (733)
Q Consensus 331 i~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~ 410 (733)
+...+...++..++. ...+.+.||||+|||++|+++. + .+ ...
T Consensus 245 l~~~L~~AV~~rl~s--d~pvg~~LSGGlDSs~Iaa~~~-------~-~~--~~~------------------------- 287 (589)
T TIGR03104 245 ILEALRLAVKRRLVA--DVPVGVLLSGGLDSSLIVGLLA-------E-AG--VDG------------------------- 287 (589)
T ss_pred HHHHHHHHHHHHhhc--CCceeEEecCCccHHHHHHHHH-------H-hc--CCC-------------------------
Confidence 333344444455533 3567889999999999988762 1 21 111
Q ss_pred hhheeeeccCcCC---hHHHHHHHHHHHHHhcccccccchhH
Q 004727 411 RIFYTVFMGSENS---SQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 411 ~~~~~v~m~~~~s---s~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
+.|++++...+ ...+...|+++|+.+|..|+++.+++
T Consensus 288 --l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~ 327 (589)
T TIGR03104 288 --LRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPN 327 (589)
T ss_pred --ceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCH
Confidence 34555543333 23567899999999999999998865
No 114
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.59 E-value=0.00027 Score=81.20 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=79.3
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCC-hH-H
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS-SQ-E 426 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~s-s~-~ 426 (733)
.++++.||||+||+++|.++ .+ .|.+ ++++++.+... +. .
T Consensus 178 gk~lvllSGGiDS~va~~~~-------~k---rG~~----------------------------v~~l~f~~g~~~~~~~ 219 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYML-------MR---RGSR----------------------------VHYCFFNLGGAAHEIG 219 (482)
T ss_pred CeEEEEEcCCchHHHHHHHH-------HH---cCCE----------------------------EEEEEEecCCchhHHH
Confidence 47999999999999988775 11 1433 46677654332 23 3
Q ss_pred HHHHHHHHHHHhccc----ccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhh-HHHHHHHHHHHHHHhhcc
Q 004727 427 TRMLAKKLADEIGSW----HLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQN-IQARIRMVLAFMLASLLP 501 (733)
Q Consensus 427 t~~~A~~lA~~lGi~----~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~N-iqaR~R~~~~~~~A~~~~ 501 (733)
..+.|+.+|+.++.. ++++++.+.+.++ +.. .| +. .+. +.-|.-+.++-.+|...
T Consensus 220 ~~~~a~~l~~~~~~~~~~~l~~v~~~~~~~~i---~~~----~~----------~~--~~~~v~rR~ml~iA~~~A~~~- 279 (482)
T PRK01269 220 VKQVAHYLWNRYGSSHRVRFISVDFEPVVGEI---LEK----VD----------DG--QMGVVLKRMMLRAASKVAERY- 279 (482)
T ss_pred HHHHHHHHHHHhCccCCceEEEEecHHHHHHH---Hhc----CC----------Cc--eecHHHHHHHHHHHHHHHHHc-
Confidence 678888898887743 5666766544422 221 11 11 122 33332222334444332
Q ss_pred cccCCCcEEEEeccCccccc----ccccccc-ccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCC
Q 004727 502 WVHNKPGFYLVLGSSNVDEG----LRGYLTK-YDCSSADINPIGSISKQDLRTFLRWAATHLGY 560 (733)
Q Consensus 502 ~~~~~~g~~lVlgT~N~sE~----~~Gy~T~-~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~ 560 (733)
+...+|.|.+ .++. +....+. .+...-.+.|+.+++|.||-++ ++.+|.
T Consensus 280 -----ga~~IvtG~~-l~dvasqtl~nl~~~~~~~~~~v~rPLi~~dK~EIi~~----a~~ig~ 333 (482)
T PRK01269 280 -----GIQALVTGEA-LGQVSSQTLTNLRLIDNVTDTLILRPLIAMDKEDIIDL----AREIGT 333 (482)
T ss_pred -----CCCEEEECcC-hHhhhhHHHHHHHhhhhhcCCceecCCcCCCHHHHHHH----HHHhCC
Confidence 2234555543 3322 1111121 1112446799999999999998 566775
No 115
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.56 E-value=0.00027 Score=80.18 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=49.1
Q ss_pred hhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeec
Q 004727 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (733)
Q Consensus 339 L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m 418 (733)
|...++. .++++||+|||+||.+++.++..+ .....|.+ +++++.
T Consensus 8 l~~~l~~--~~~ilvavSGG~DS~~Ll~~l~~~-----~~~~~~~~----------------------------l~a~hv 52 (436)
T PRK10660 8 LNRQLLT--SRQILVAFSGGLDSTVLLHLLVQW-----RTENPGVT----------------------------LRAIHV 52 (436)
T ss_pred HHHhcCC--CCeEEEEecCCHHHHHHHHHHHHH-----HHhcCCCe----------------------------EEEEEE
Confidence 3444443 267999999999999877765211 00000111 456665
Q ss_pred cCc--CChHHHHHHHHHHHHHhcccccccchh
Q 004727 419 GSE--NSSQETRMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 419 ~~~--~ss~~t~~~A~~lA~~lGi~~~~i~I~ 448 (733)
... ..|.+..+.++.+|+.+|++|++++++
T Consensus 53 nhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 53 HHGLSPNADSWVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred eCCCCcchHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 533 235556688999999999999998876
No 116
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.00069 Score=72.68 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=86.5
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccC--cCChHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS--ENSSQE 426 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~--~~ss~~ 426 (733)
.+++||+|||.||++++.++ ..++ .. + . +.+++..- ...+..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L--------~~l~--~~-~-------~------------------~~a~~Vd~~~~~~~~~ 65 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLL--------KELG--RR-I-------E------------------VEAVHVDHGLRGYSDQ 65 (298)
T ss_pred CeEEEEeCCChHHHHHHHHH--------HHhc--cC-c-------e------------------EEEEEecCCCCCccch
Confidence 68999999999999988876 2221 10 0 0 23444432 223477
Q ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCC
Q 004727 427 TRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 427 t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~ 506 (733)
..+.++.+|+.+|+++.+.+++..+.. . ....-..|.+-.+.|.-+++.+|...
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~~~~~~------~--------------~~~~~~~c~~c~~~R~~~l~~~a~~~------ 119 (298)
T COG0037 66 EAELVEKLCEKLGIPLIVERVTDDLGR------E--------------TLDGKSICAACRRLRRGLLYKIAKEL------ 119 (298)
T ss_pred HHHHHHHHHHHhCCceEEEEEEeeccc------c--------------ccCCCChhHHHHHHHHHHHHHHHHHc------
Confidence 889999999999999988888742210 0 00011245566667777777777654
Q ss_pred CcEEEEecc-Ccccccc----------------cccccccc-CCC-CCCCCCCCCcHHhHHHHHHHHHhhcCCc
Q 004727 507 PGFYLVLGS-SNVDEGL----------------RGYLTKYD-CSS-ADINPIGSISKQDLRTFLRWAATHLGYS 561 (733)
Q Consensus 507 ~g~~lVlgT-~N~sE~~----------------~Gy~T~~g-d~~-~~i~Pi~~l~K~~vr~l~~~~~~~~g~p 561 (733)
| .-+|.| .|.++.+ .|...+.. ... ..+-|+-.+++.++..++ ...|+|
T Consensus 120 -g-~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~~~~~ei~~~~----~~~~l~ 187 (298)
T COG0037 120 -G-ADKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLYVREKEIELYA----KEKGLP 187 (298)
T ss_pred -C-CCeEEeccCcHHHHHHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeecccCCHHHHHHHH----HHcCCC
Confidence 2 223444 3444321 11111111 112 367899999999999994 446666
No 117
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.38 E-value=0.00086 Score=67.01 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=86.8
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
-+++|++|||+|||++|.++ +-+ |.. .-| .+..|| +.-+
T Consensus 61 ~kiaVA~SGG~DSsas~iil--------R~~--g~~---------------v~p-----------~t~~Lp-----~~ir 99 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIIL--------RWA--GFT---------------VDP-----------GTAILP-----DHIR 99 (255)
T ss_pred ceEEEEecCCcchHHHHHHH--------Hhh--cee---------------ecc-----------ccccCC-----HHHh
Confidence 47999999999999988886 222 211 012 233343 4567
Q ss_pred HHHHHHHHHhcccccccchh--HHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHHHHHHHHHHHhhcccccCC
Q 004727 429 MLAKKLADEIGSWHLDVSID--TVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~--~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~R~~~~~~~A~~~~~~~~~ 506 (733)
..++.+++.||..+.-+.++ ++++. .+. |+ .+++-.+|-.-+ ...+..|..+
T Consensus 100 ~n~~~l~~~lg~~p~yveedl~~i~kG---aln---GR-----------fhpCGRCh~~I~---~~V~~k~re~------ 153 (255)
T COG1365 100 RNKEELETLLGEVPEYVEEDLEDIEKG---ALN---GR-----------FHPCGRCHSMIE---NAVMDKAREL------ 153 (255)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh---hcc---CC-----------CCCcchHHHHHH---HHHHHHHHhc------
Confidence 78999999999987665443 22211 111 21 123334443322 1234444333
Q ss_pred CcEEEEeccCccccccccccccc-cCCCCCCCC--CCCCcHHhHHHHHHHHHh----hcCCccchhhhcCCC
Q 004727 507 PGFYLVLGSSNVDEGLRGYLTKY-DCSSADINP--IGSISKQDLRTFLRWAAT----HLGYSSLAEIEAAPP 571 (733)
Q Consensus 507 ~g~~lVlgT~N~sE~~~Gy~T~~-gd~~~~i~P--i~~l~K~~vr~l~~~~~~----~~g~p~l~~i~~~~p 571 (733)
..-|+.+|+. +..||...| .|.---+|- +-.++|.++|.++.|-.- ++|-|-+..+..+.|
T Consensus 154 --di~~vafGDl--Ls~G~~svy~eD~i~rlnlPAflAltK~Elr~il~~~~~e~~~kygCPll~e~hkr~p 221 (255)
T COG1365 154 --DIDVVAFGDL--LSTGYGSVYREDGIFRLNLPAFLALTKDELRSILKWNGYELEMKYGCPLLREVHKRHP 221 (255)
T ss_pred --CCeEEEEccc--ccccccceeccCCEEEEccHHHHhhCcHHHHHHHHhcCccchhccCCchHHHHHHhCc
Confidence 3456777764 567887766 454333331 256899999999988332 245565555555444
No 118
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00043 Score=80.51 Aligned_cols=161 Identities=21% Similarity=0.194 Sum_probs=87.7
Q ss_pred hhhhcCcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHH
Q 004727 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (733)
Q Consensus 329 eei~~~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~ 408 (733)
+++...+...+..+++. ...+.+-||||+|||++|+++. +... ..
T Consensus 213 ~~l~~~l~~sV~~r~~a--dvpvg~~lSGGlDSS~Iaa~a~-------~~~~---~~----------------------- 257 (542)
T COG0367 213 EHLRSLLEDAVKRRLVA--DVPVGVFLSGGLDSSLIAAIAA-------EELG---KE----------------------- 257 (542)
T ss_pred HHHHHHHHHHHHHHhcc--CCcEEEEeCCCccHHHHHHHHH-------Hhcc---cc-----------------------
Confidence 34444444444444432 3456677999999999999972 2211 10
Q ss_pred HhhhheeeeccCcCChHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHHHH
Q 004727 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (733)
Q Consensus 409 ~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~NiqaR~ 488 (733)
..++.+.+..++...+...|+.+|+.||.+|+.+.+.+ +++...+.++....+.. . . +.+
T Consensus 258 ---~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~--~e~~~~~~~vv~~~~~p--------~--~---~~~-- 317 (542)
T COG0367 258 ---GKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTN--EELLNALPEVVKALDTP--------G--G---MAA-- 317 (542)
T ss_pred ---ceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecH--HHHHHHHHHHHhhcCCC--------C--c---ccc--
Confidence 01112333334445678999999999999998887765 45555566554333211 1 1 111
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeccCcccccccccc-ccccCCCCCCCCCCCCcHHhHHHHHHH
Q 004727 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYL-TKYDCSSADINPIGSISKQDLRTFLRW 553 (733)
Q Consensus 489 R~~~~~~~A~~~~~~~~~~g~~lVlgT~N~sE~~~Gy~-T~~gd~~~~i~Pi~~l~K~~vr~l~~~ 553 (733)
..-+|.+++.. .+.|..+|+..---||..-||. ... ....|...+.++..+.+..+
T Consensus 318 -~~ply~~~~~a----~~~g~kVvLSGeGADElFgGY~~~~~----~~~~~~~~~~~~~~~~~~~~ 374 (542)
T COG0367 318 -SIPLYLLSRKA----RAEGEKVVLSGEGADELFGGYPPYSR----FAPGPEELLNEALRRALALI 374 (542)
T ss_pred -hhHHHHHHHhh----hhcCcEEeecCccHHHHhcCCchhhh----hccchHHHHHHHHHhhhhhh
Confidence 23355555432 2233356665555788888993 111 11233344555555555443
No 119
>PRK13794 hypothetical protein; Provisional
Probab=97.18 E-value=0.0024 Score=73.20 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred chhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhhee
Q 004727 336 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (733)
Q Consensus 336 ~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 415 (733)
...|+..+++.+ ..++|++|||.||++++.|+ .++++ .+ +..
T Consensus 236 ~~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~-------~~~~~--~~----------------------------~~v 277 (479)
T PRK13794 236 IGFIRNTAEKIN-KPVTVAYSGGKDSLATLLLA-------LKALG--IN----------------------------FPV 277 (479)
T ss_pred HHHHHHHHHhcC-CCEEEEecchHHHHHHHHHH-------HHHhC--CC----------------------------eEE
Confidence 445555555444 57999999999999988886 44441 11 467
Q ss_pred eeccCcCChHHHHHHHHHHHHHhcccccccchh
Q 004727 416 VFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 416 v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~ 448 (733)
+++.|....++|.+.++++++.+|+++..+..+
T Consensus 278 vfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~ 310 (479)
T PRK13794 278 LFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE 310 (479)
T ss_pred EEEECCCCChHHHHHHHHHHHhcCCcEEEEchH
Confidence 888887778999999999999999999888765
No 120
>PRK13795 hypothetical protein; Provisional
Probab=97.10 E-value=0.0018 Score=76.79 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=59.1
Q ss_pred CcchhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhh
Q 004727 334 GPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIF 413 (733)
Q Consensus 334 ~~~~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 413 (733)
....+|+.++.+. ...++|++|||.||++++.|+ .++.. + +
T Consensus 230 ~ai~~Ir~~~~~~-~~~v~Va~SGGKDS~vll~L~-------~~a~~---~----------------------------~ 270 (636)
T PRK13795 230 EAVNFIRGVAEKY-NLPVSVSFSGGKDSLVVLDLA-------REALK---D----------------------------F 270 (636)
T ss_pred HHHHHHHHHHHHc-CCCEEEEecCcHHHHHHHHHH-------HHhCC---C----------------------------c
Confidence 3355666666655 357999999999999998887 34321 1 3
Q ss_pred eeeeccCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004727 414 YTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 414 ~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
..++..+....++|.+.++++++.+|+++.++..+.
T Consensus 271 ~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~ 306 (636)
T PRK13795 271 KAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGD 306 (636)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccH
Confidence 567777777778999999999999999999987764
No 121
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.09 E-value=0.00064 Score=70.01 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhcccccccchh
Q 004727 425 QETRMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 425 ~~t~~~A~~lA~~lGi~~~~i~I~ 448 (733)
....+.|+.+|+.+|++|..++++
T Consensus 42 ~~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 42 TPNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CCCHHHHHHHHHHhCCCEEEEECC
Confidence 346789999999999999999987
No 122
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.99 E-value=0.0032 Score=65.80 Aligned_cols=74 Identities=18% Similarity=0.114 Sum_probs=56.2
Q ss_pred hhhhHHhhhcCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheee
Q 004727 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (733)
Q Consensus 337 ~~L~dyl~~sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v 416 (733)
..|+.-+++.+ .+++|++|||-||++++.|+ .+ + +.+ +..+
T Consensus 30 e~i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~-------~~-~--~~~----------------------------i~vv 70 (241)
T PRK02090 30 ERLAWALENFG-GRLALVSSFGAEDAVLLHLV-------AQ-V--DPD----------------------------IPVI 70 (241)
T ss_pred HHHHHHHHHcC-CCEEEEecCCHHHHHHHHHH-------Hh-c--CCC----------------------------CcEE
Confidence 33455555544 35999999999999988886 22 1 111 4578
Q ss_pred eccCcCChHHHHHHHHHHHHHhcccccccchhH
Q 004727 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 417 ~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
++.+....++|.+.++++++.+|++++++..+.
T Consensus 71 fiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~ 103 (241)
T PRK02090 71 FLDTGYLFPETYRFIDELTERLLLNLKVYRPDA 103 (241)
T ss_pred EecCCCCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 888877789999999999999999998887653
No 123
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.98 E-value=0.0042 Score=60.69 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=44.4
Q ss_pred eeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHH
Q 004727 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (733)
Q Consensus 351 ~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~ 430 (733)
++|++|||-||++++.|+ .++.. + +..++..+....++|.+.
T Consensus 2 i~vs~SGGKDS~v~l~l~-------~~~~~---~----------------------------~~vv~~dtg~e~p~t~~~ 43 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLA-------REAGR---K----------------------------VPVVFIDTGYEFPETYEF 43 (174)
T ss_dssp EEEE--SSHHHHHHHHHH-------HHHHT---T----------------------------CEEEEEE-STB-HHHHHH
T ss_pred eEEEecCCHHHHHHHHHH-------HHhcC---C----------------------------CcEEEEecCccCHHHHHH
Confidence 689999999999988887 34431 1 245667777788999999
Q ss_pred HHHHHHHhcccccccchhHH
Q 004727 431 AKKLADEIGSWHLDVSIDTV 450 (733)
Q Consensus 431 A~~lA~~lGi~~~~i~I~~~ 450 (733)
++.+++.+|++...+.....
T Consensus 44 ~~~~~~~~~~~i~~~~~~~~ 63 (174)
T PF01507_consen 44 VDELAKRYGIPIIVYRPPET 63 (174)
T ss_dssp HHHHHHHTTCEEEEEETTSH
T ss_pred HHHHHhhhhhhhhhcccccc
Confidence 99999999999666655543
No 124
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.98 E-value=0.007 Score=66.72 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=89.7
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeecc-CcCChHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-SENSSQET 427 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~-~~~ss~~t 427 (733)
.++++-||||+||-|.+.++ ++.|-+ ++.|++. ..++++..
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~----------mkRG~~----------------------------v~~v~f~~~p~~~~~a 217 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLM----------MKRGVE----------------------------VIPVHFGNPPYTSEKA 217 (383)
T ss_pred CcEEEEEeCCCChHHHHHHH----------HhcCCE----------------------------EEEEEEcCCCCchHHH
Confidence 46888999999999988776 222433 4677773 45678888
Q ss_pred HHHHHHHH-HHhccc-----ccccchhHHHHHHHHHHHhhhCCCCceeecCCccccccchhhHHH-HHHHHHHHHHHhhc
Q 004727 428 RMLAKKLA-DEIGSW-----HLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQA-RIRMVLAFMLASLL 500 (733)
Q Consensus 428 ~~~A~~lA-~~lGi~-----~~~i~I~~~~~~~~~~~~~~~g~~p~~~~~gg~~~~~~a~~Niqa-R~R~~~~~~~A~~~ 500 (733)
++.+..|+ ..+... ++.+|..++...+.....+ + +-++-- |+-+-++..+|..
T Consensus 218 ~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~~~------~-------------y~~v~~rR~M~riA~~iae~- 277 (383)
T COG0301 218 REKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKVPE------S-------------YRCVLLKRMMYRIAEKLAEE- 277 (383)
T ss_pred HHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhcCc------c-------------ceehHHHHHHHHHHHHHHHH-
Confidence 88888888 666544 4677887776654432211 1 111222 2222233334432
Q ss_pred ccccCCCcEEEEeccCc----c-cccccc-ccccccCCCCCCCCCCCCcHHhHHHHHHHHHhhcCC---c----cchhhh
Q 004727 501 PWVHNKPGFYLVLGSSN----V-DEGLRG-YLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY---S----SLAEIE 567 (733)
Q Consensus 501 ~~~~~~~g~~lVlgT~N----~-sE~~~G-y~T~~gd~~~~i~Pi~~l~K~~vr~l~~~~~~~~g~---p----~l~~i~ 567 (733)
.|. ..+-||. + |+.+-. +....+-..-.+-||-+++|.+|-+++ ++.|. . -.--.+
T Consensus 278 ------~g~-~aIvtGEsLGQVASQTl~nL~~i~~~t~~pIlRPLI~~DK~eIi~~A----r~IgT~eiSi~p~e~cc~~ 346 (383)
T COG0301 278 ------FGA-KAIVTGESLGQVASQTLENLRVIDSVTNTPVLRPLIGLDKEEIIEIA----RRIGTYEISIEPPEDCCVI 346 (383)
T ss_pred ------hCC-eEEEecCcchhhhHhHHHHHHHHHhccCCceeccccCCCHHHHHHHH----HHhCChhhhccCCCCCcCc
Confidence 233 3344442 1 111111 111112224578899999999999995 44442 1 112344
Q ss_pred cCCCCccccc
Q 004727 568 AAPPTAELEP 577 (733)
Q Consensus 568 ~~~psaeL~p 577 (733)
-+||++--.|
T Consensus 347 f~p~~p~t~~ 356 (383)
T COG0301 347 FAPPTPKTKP 356 (383)
T ss_pred cCCCCCccCc
Confidence 5677766666
No 125
>PRK08557 hypothetical protein; Provisional
Probab=96.66 E-value=0.018 Score=64.70 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=57.1
Q ss_pred cCcchhhhHHhhhcCC--ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHh
Q 004727 333 FGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (733)
Q Consensus 333 ~~~~~~L~dyl~~sg~--~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~ 410 (733)
......|+..+++.+. ..+++++|||.||++++.|+ .++ +.+
T Consensus 164 ~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~-------~~~---~~~-------------------------- 207 (417)
T PRK08557 164 ENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLA-------KEV---IPD-------------------------- 207 (417)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHH-------HHh---CCC--------------------------
Confidence 3344556676776654 35789999999999987775 222 111
Q ss_pred hhheeeeccCcCChHHHHHHHHHHHHHhcccccccchh
Q 004727 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 411 ~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I~ 448 (733)
+..++..|....++|.+.++++++.+|+++.++.-+
T Consensus 208 --i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 208 --LEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred --CEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 356777776667899999999999999999888643
No 126
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=96.55 E-value=0.0049 Score=55.51 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=16.1
Q ss_pred eeeecCCCCCchhHHHHH
Q 004727 351 FLLPLSGGADSSSVAAIV 368 (733)
Q Consensus 351 ~vl~LSGGiDSa~~A~l~ 368 (733)
++|++|||+||++++.++
T Consensus 1 v~v~~SGG~DS~~ll~~l 18 (103)
T cd01986 1 VLVAFSGGKDSSVAAALL 18 (103)
T ss_pred CEEEEeCcHHHHHHHHHH
Confidence 589999999999988876
No 127
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=96.39 E-value=0.012 Score=63.01 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=50.6
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
.+.++++|||.||++++.|+ .+++..+ + .| +..++..+...-+++.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa-------~kaf~~~--~---------------~p----------~~vl~IDTG~~F~Et~ 65 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLA-------RKAFYPG--P---------------LP----------FPLLHVDTGWKFREMI 65 (294)
T ss_pred CCcEEEEecChHHHHHHHHH-------HHHhccc--C---------------CC----------eEEEEEecCCCCHHHH
Confidence 34678899999999988887 4554211 0 11 4567778776678899
Q ss_pred HHHHHHHHHhcccccccchhH
Q 004727 429 MLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~ 449 (733)
+...++|+.+|+++.+...++
T Consensus 66 efrd~~a~~~gl~l~v~~~~~ 86 (294)
T TIGR02039 66 AFRDHMVAKYGLRLIVHSNEE 86 (294)
T ss_pred HHHHHHHHHhCCCEEEEechh
Confidence 999999999999998887654
No 128
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.043 Score=52.89 Aligned_cols=59 Identities=31% Similarity=0.369 Sum_probs=44.0
Q ss_pred eeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHH
Q 004727 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (733)
Q Consensus 351 ~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~ 430 (733)
+-+-+|||-|||+.|.|+ +-+ |.+ |. ++||.++--. +.+.
T Consensus 3 v~vLfSGGKDSSLaA~iL--------~kl--gye-----------------v~---------LVTvnFGv~d----~~k~ 42 (198)
T COG2117 3 VYVLFSGGKDSSLAALIL--------DKL--GYE-----------------VE---------LVTVNFGVLD----SWKY 42 (198)
T ss_pred eEEEecCCCchhHHHHHH--------HHh--CCC-----------------cE---------EEEEEecccc----chhh
Confidence 456799999999977765 445 344 11 5788876543 3577
Q ss_pred HHHHHHHhcccccccchhH
Q 004727 431 AKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 431 A~~lA~~lGi~~~~i~I~~ 449 (733)
|++-|+.||-+|.++.++.
T Consensus 43 A~~tA~~lgF~h~vl~Ldr 61 (198)
T COG2117 43 ARETAAILGFPHEVLQLDR 61 (198)
T ss_pred HHHHHHHhCCCcceeccCH
Confidence 8899999999999998874
No 129
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=95.93 E-value=0.074 Score=54.38 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=47.3
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
..++|+.|||.||+|++-|+ .+. +++ +..+++.+...-++|.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~-------~~~---~~~----------------------------~~v~f~DTg~efpeT~ 55 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLV-------SKI---SPD----------------------------IPVIFLDTGYHFPETY 55 (212)
T ss_pred CCEEEEecCCHHHHHHHHHH-------Hhc---CCC----------------------------CcEEEecCCCCCHHHH
Confidence 47999999999999988876 222 111 3467888888889999
Q ss_pred HHHHHHHHHhcccccccch
Q 004727 429 MLAKKLADEIGSWHLDVSI 447 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I 447 (733)
+...++++.+|.....+.-
T Consensus 56 efv~~~~~~~~l~i~~~~~ 74 (212)
T TIGR00434 56 ELIDELTERYPLNIKVYKP 74 (212)
T ss_pred HHHHHHHHHhCCceEEECC
Confidence 9999999999977655543
No 130
>PRK05370 argininosuccinate synthase; Validated
Probab=95.80 E-value=0.011 Score=66.13 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=49.5
Q ss_pred CCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHH
Q 004727 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (733)
Q Consensus 347 g~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~ 426 (733)
+-+++||+.|||+|||+++..+ .+. |.+ |+|++....+...+
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL-------~e~---~~e----------------------------Via~~aDvGQ~~~e 51 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWM-------RQK---GAV----------------------------PYAYTANLGQPDED 51 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHH-------Hhc---CCe----------------------------EEEEEEECCCCCcc
Confidence 3468999999999999977764 221 333 46666654443346
Q ss_pred HHHHHHHHHHHhcc-cccccchhHHH
Q 004727 427 TRMLAKKLADEIGS-WHLDVSIDTVV 451 (733)
Q Consensus 427 t~~~A~~lA~~lGi-~~~~i~I~~~~ 451 (733)
+.+.+++-|..+|+ +|+++|..+.+
T Consensus 52 d~~~i~~kA~~~GA~~~~viDlr~eF 77 (447)
T PRK05370 52 DYDAIPRRAMEYGAENARLIDCRAQL 77 (447)
T ss_pred chHHHHHHHHHhCCCEEEEeccHHHH
Confidence 78899999999999 69999998654
No 131
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=95.59 E-value=0.02 Score=62.57 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=50.9
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHH
Q 004727 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t 427 (733)
.+++||+.|||+|+|++...+ .+.. |.+ ++|++..-.+. .++
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL-------~e~~--~~e----------------------------Via~tadvGQ~-eed 45 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWL-------KEKG--GAE----------------------------VIAVTADVGQP-EED 45 (403)
T ss_pred CcEEEEEecCCccHHHHHHHH-------HHhc--Cce----------------------------EEEEEEeCCCC-hHH
Confidence 478999999999999877765 3331 122 46777765443 789
Q ss_pred HHHHHHHHHHhccc-ccccchhHHH
Q 004727 428 RMLAKKLADEIGSW-HLDVSIDTVV 451 (733)
Q Consensus 428 ~~~A~~lA~~lGi~-~~~i~I~~~~ 451 (733)
.+.+++=|..+|+. |+++|..+.|
T Consensus 46 ~~~i~eKA~~~Ga~~~~viD~reeF 70 (403)
T COG0137 46 LDAIREKALELGAEEAYVIDAREEF 70 (403)
T ss_pred hHHHHHHHHHhCCceEEEeecHHHH
Confidence 99999999999998 9999998654
No 132
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.48 E-value=0.094 Score=56.67 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=51.2
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHH
Q 004727 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t 427 (733)
+.+.+++.|||.||+|++.|+ .+++..+ . .| +-.++..|...-++|
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa-------~kaf~~~--~---------------~~----------~pvl~VDTG~~FpEt 82 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLA-------MKAFRPT--R---------------PP----------FPLLHVDTTWKFREM 82 (312)
T ss_pred cCCcEEEecCChHHHHHHHHH-------HHhhccc--C---------------CC----------eeEEEeCCCCCCHHH
Confidence 356789999999999988887 4444211 0 01 346778888888999
Q ss_pred HHHHHHHHHHhcccccccchhH
Q 004727 428 RMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 428 ~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
.+...++|+.+|+++.+..-.+
T Consensus 83 ~efrD~~a~~~gl~Liv~~~~~ 104 (312)
T PRK12563 83 IDFRDRRAKELGLDLVVHHNPD 104 (312)
T ss_pred HHHHHHHHHHhCCcEEEecChH
Confidence 9999999999999987765443
No 133
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=95.48 E-value=0.0099 Score=65.88 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=42.5
Q ss_pred eeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHHHH
Q 004727 352 LLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLA 431 (733)
Q Consensus 352 vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~~A 431 (733)
||++|||+|||++...+ .+. |.-+ |+|++....+ +.++.+.+
T Consensus 1 VLAySGGLDTS~~l~~L-------~e~---~~~~---------------------------Via~~aDlGq-~~~d~~~i 42 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWL-------KEE---GGYE---------------------------VIAVTADLGQ-PDEDLEAI 42 (388)
T ss_dssp EEE--SSHHHHHHHHHH-------HHT---TTEE---------------------------EEEEEEESSS-T-S-HHHH
T ss_pred CeeeCCChHHHHHHHHH-------Hhh---cCce---------------------------EEEEEEECCC-cHHHHHHH
Confidence 78999999999877765 222 3222 5777776545 45789999
Q ss_pred HHHHHHhcc-cccccchhHHHH
Q 004727 432 KKLADEIGS-WHLDVSIDTVVS 452 (733)
Q Consensus 432 ~~lA~~lGi-~~~~i~I~~~~~ 452 (733)
++-|..+|+ +|+++|..+.+-
T Consensus 43 ~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp HHHHHHHT-SEEEEEE-HHHHH
T ss_pred HHHHHhcCCceeeecchHHHHH
Confidence 999999998 999999987553
No 134
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=95.17 E-value=0.017 Score=59.55 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhcccccccchhH
Q 004727 424 SQETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 424 s~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
+....+.++..|+.||++++.+.+..
T Consensus 43 h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 43 HSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred ccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 34456889999999999998887643
No 135
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.76 E-value=0.21 Score=52.86 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=49.3
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHHH
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~~ 429 (733)
.++++.|||.||+|++.|+ .++.. + +..++..|..--++|.+
T Consensus 41 ~~~~~~S~Gkds~V~l~L~-------~k~~~---~----------------------------~~vif~DTg~~f~Et~~ 82 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLA-------AKAFP---D----------------------------FPVIFLDTGYHFPETYE 82 (261)
T ss_pred CeEEEecCchhHHHHHHHH-------HHhcC---C----------------------------CcEEEEeCCCcCHHHHH
Confidence 3799999999999999887 44431 1 24677777777899999
Q ss_pred HHHHHHHHhcccccccchhHH
Q 004727 430 LAKKLADEIGSWHLDVSIDTV 450 (733)
Q Consensus 430 ~A~~lA~~lGi~~~~i~I~~~ 450 (733)
-+.++++.+|++..+..-+..
T Consensus 83 ~~d~~~~~~~~~l~~~~~~~~ 103 (261)
T COG0175 83 FRDRLAEEYGLDLKVYRPDDE 103 (261)
T ss_pred HHHHHHHHcCCeEEEecCccc
Confidence 999999999987766665543
No 136
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=92.79 E-value=0.29 Score=50.72 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=44.4
Q ss_pred CceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHH
Q 004727 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (733)
Q Consensus 348 ~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t 427 (733)
...++++.|||.||+|++-|+ .++.+ ++ +-.++..|...-++|
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~-------~~~~~--~~----------------------------i~vv~vDTg~~fpET 67 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLL-------SSISE--PM----------------------------IPVIFIDTLYHFPQT 67 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHH-------HHhhC--CC----------------------------CCEEEEeCCCCCHHH
Confidence 356999999999999988887 23310 11 346788888888999
Q ss_pred HHHHHHHHHHhccc
Q 004727 428 RMLAKKLADEIGSW 441 (733)
Q Consensus 428 ~~~A~~lA~~lGi~ 441 (733)
.+.+.++++.+|..
T Consensus 68 ~e~~d~~~~~~~~~ 81 (226)
T TIGR02057 68 LTLKDELTKKYYQT 81 (226)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999999943
No 137
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=90.68 E-value=0.36 Score=41.54 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=16.0
Q ss_pred eeeecCCCCCchhHHHHH
Q 004727 351 FLLPLSGGADSSSVAAIV 368 (733)
Q Consensus 351 ~vl~LSGGiDSa~~A~l~ 368 (733)
++|++|||.||++++.++
T Consensus 1 ilv~~sgg~dS~~~l~~~ 18 (86)
T cd01984 1 ILVALSGGLDSSVLLHLA 18 (86)
T ss_pred CEEEeeCCHHHHHHHHHH
Confidence 589999999999988776
No 138
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=89.21 E-value=0.54 Score=49.88 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=44.8
Q ss_pred cCCceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChH
Q 004727 346 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQ 425 (733)
Q Consensus 346 sg~~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~ 425 (733)
++.+.+||+.|||+|+|+.++.+ .+ +|.+ +.+||..-. ..
T Consensus 3 ~~~~~vVLAySGgLDTscil~WL-------ke---qGye-----------------------------Viay~AnvG-Q~ 42 (412)
T KOG1706|consen 3 SSKKSVVLAYSGGLDTSCILAWL-------KE---QGYE-----------------------------VIAYLANVG-QK 42 (412)
T ss_pred CCCceEEEEecCCcCchhhhHHH-------Hh---cCce-----------------------------EEEeecccc-ch
Confidence 34578999999999999877665 23 3776 345665432 37
Q ss_pred HHHHHHHHHHHHhccccc-ccchh
Q 004727 426 ETRMLAKKLADEIGSWHL-DVSID 448 (733)
Q Consensus 426 ~t~~~A~~lA~~lGi~~~-~i~I~ 448 (733)
++.+.|++=|..+|+.-. +-|..
T Consensus 43 edfe~ar~kAlk~Gakk~~~ed~~ 66 (412)
T KOG1706|consen 43 EDFEEARKKALKSGAKKVVVEDVR 66 (412)
T ss_pred hhHHHHHHhhhhcCceEEEehhhh
Confidence 889999999999999743 33444
No 139
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=88.04 E-value=0.66 Score=47.48 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=41.7
Q ss_pred eeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCC-----h
Q 004727 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS-----S 424 (733)
Q Consensus 350 g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~s-----s 424 (733)
+++.-+|||-||..++.++ +.+|.+-+ ..+.|.+.+. +
T Consensus 2 k~~aL~SGGKDS~~Al~~a----------~~~G~eV~---------------------------~Ll~~~p~~~dS~m~H 44 (223)
T COG2102 2 KVIALYSGGKDSFYALYLA----------LEEGHEVV---------------------------YLLTVKPENGDSYMFH 44 (223)
T ss_pred cEEEEEecCcHHHHHHHHH----------HHcCCeeE---------------------------EEEEEecCCCCeeeee
Confidence 4567789999998766655 33466621 2222222221 2
Q ss_pred HHHHHHHHHHHHHhcccccccchhH
Q 004727 425 QETRMLAKKLADEIGSWHLDVSIDT 449 (733)
Q Consensus 425 ~~t~~~A~~lA~~lGi~~~~i~I~~ 449 (733)
....+.+..+|+.+|+++.....+.
T Consensus 45 ~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 45 TPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred ccchHHHHHHHHhcCCceEEEecCc
Confidence 2446789999999999998888876
No 140
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=86.46 E-value=0.48 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcccccccch
Q 004727 427 TRMLAKKLADEIGSWHLDVSI 447 (733)
Q Consensus 427 t~~~A~~lA~~lGi~~~~i~I 447 (733)
..+..+..|+.||+++..+..
T Consensus 46 ~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeec
Confidence 457788899999999876544
No 141
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=86.28 E-value=0.65 Score=52.83 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.2
Q ss_pred ceeeeecCCCCCchhHHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIV 368 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~ 368 (733)
..++|++|||-||++++.|+
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv 33 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLI 33 (447)
T ss_pred CceEEEeCCCHHHHHHHHHH
Confidence 45899999999999999888
No 142
>PRK06850 hypothetical protein; Provisional
Probab=85.33 E-value=1 Score=51.94 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=18.3
Q ss_pred ceeeeecCCCCCchhHHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIV 368 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~ 368 (733)
..++||+|||-||++++.|+
T Consensus 35 ~P~vV~fSGGKDStavL~Lv 54 (507)
T PRK06850 35 RPWVIGYSGGKDSTAVLQLV 54 (507)
T ss_pred CCeEEeCCCCchHHHHHHHH
Confidence 56899999999999999887
No 143
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=79.90 E-value=0.76 Score=47.36 Aligned_cols=21 Identities=14% Similarity=0.204 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcccccccchh
Q 004727 428 RMLAKKLADEIGSWHLDVSID 448 (733)
Q Consensus 428 ~~~A~~lA~~lGi~~~~i~I~ 448 (733)
.+..+..|+.||+++..+.++
T Consensus 47 ~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 47 IELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp GTCHHHHHHHHT--EEEEEE-
T ss_pred HHHHHHHHHHCCCCEEEEEcc
Confidence 567788899999999988876
No 144
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=76.80 E-value=1.5 Score=49.05 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.5
Q ss_pred CCceeeeecCCCCCchhHHHHH
Q 004727 347 GASGFLLPLSGGADSSSVAAIV 368 (733)
Q Consensus 347 g~~g~vl~LSGGiDSa~~A~l~ 368 (733)
.-..+.|-+|||+||+++|.|+
T Consensus 249 ~~s~VcVlfSGGvDs~vvA~l~ 270 (520)
T KOG0573|consen 249 HESNVCVLFSGGVDSTVVAVLA 270 (520)
T ss_pred ccCcEEEEecCCchHHHHHHHH
Confidence 4467999999999999999997
No 145
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=75.15 E-value=4.7 Score=43.78 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCceeeeecCCCCCchhHHHHHhh
Q 004727 347 GASGFLLPLSGGADSSSVAAIVGC 370 (733)
Q Consensus 347 g~~g~vl~LSGGiDSa~~A~l~~~ 370 (733)
.+..+.|++|||-||+|++-|+..
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~ 49 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAE 49 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHH
Confidence 457899999999999999988743
No 146
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=59.41 E-value=22 Score=38.63 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=42.1
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCChHHHH
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~ss~~t~ 428 (733)
..+.+|-|||-||++.|..+ ++|. ++ ...+.+. . +..++=+...--+...
T Consensus 52 e~v~igasGgkdstvlA~v~--------~~Ln---~r------~~~g~~l-~------------Lls~degi~gyrd~sl 101 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVL--------DALN---ER------HDYGLRL-F------------LLSIDEGIRGYRDDSL 101 (347)
T ss_pred CccccccccchhHHHHHHHH--------HHhh---hh------cCCCcee-e------------eeeccccccceeccHH
Confidence 45889999999999977653 5552 21 0111000 0 1112211111122334
Q ss_pred HHHHHHHHHhcccccccchhHHHH
Q 004727 429 MLAKKLADEIGSWHLDVSIDTVVS 452 (733)
Q Consensus 429 ~~A~~lA~~lGi~~~~i~I~~~~~ 452 (733)
...+....+.|++..++...+++.
T Consensus 102 ~avkrn~~~~~lPL~ivs~~dl~~ 125 (347)
T KOG2840|consen 102 EAVKRNGVQYGLPLCIVSYKDLYG 125 (347)
T ss_pred HHHHHhhhhcCCceEEecHHHHhc
Confidence 455566788999999998888776
No 147
>PLN02309 5'-adenylylsulfate reductase
Probab=58.66 E-value=1.2e+02 Score=35.02 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=27.0
Q ss_pred eeeccCcCChHHHHHHHHHHHHHhccccccc
Q 004727 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (733)
Q Consensus 415 ~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i 445 (733)
-++++|..--++|.+.+.++++.+|++.+++
T Consensus 138 V~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 138 VFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 5678888888999999999999999887666
No 148
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=50.05 E-value=20 Score=35.99 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=29.7
Q ss_pred heeeeccCcCChHHHHHHHHHHHHHhcccccccch
Q 004727 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSI 447 (733)
Q Consensus 413 ~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i~I 447 (733)
+..+++.|...-++|.+.+.++++.+|+...++.-
T Consensus 19 ~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 19 VKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 35688888888899999999999999998777743
No 149
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=41.41 E-value=45 Score=38.40 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=27.5
Q ss_pred eeeeccCcCChHHHHHHHHHHHHHhccccccc
Q 004727 414 YTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (733)
Q Consensus 414 ~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~~i 445 (733)
--+++.|..--++|.+.+.++++.+|++.+++
T Consensus 142 pV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 142 RVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 45778888888999999999999999887755
No 150
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=30.69 E-value=42 Score=35.49 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004727 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
..++.+.+.|+.|+.-|+..++++... +..... ..+..+...+.+.++++.++++||.+.
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~~~~~~---~~~~~~--~~~~~~~~~~~l~~l~~~A~~~Gv~l~ 150 (279)
T TIGR00542 91 QGLEIMEKAIQLARDLGIRTIQLAGYD---VYYEEH--DEETRRRFREGLKEAVELAARAQVTLA 150 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEecCcc---cccCcC--CHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 456678899999999999999886321 111111 122234455667777776666787664
No 151
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.27 E-value=46 Score=34.99 Aligned_cols=60 Identities=17% Similarity=0.044 Sum_probs=36.8
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004727 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
..++.+.+.|+.|+.-|++.+++| |+............+.+.+.|.++++.++++||.+.
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 91 RALEIMKKAIRLAQDLGIRTIQLA-----GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEC-----CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 456778899999999999999975 332110001112234445567777766666777654
No 152
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=27.10 E-value=46 Score=32.77 Aligned_cols=60 Identities=20% Similarity=0.069 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004727 22 LKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 22 ~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
++.+.+.++.|+.-|++.++++=. +|..........-.+...+.+.++++.++++|+.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g---~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 129 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSG---RYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA 129 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECT---TESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCc---ccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE
Confidence 888999999999999999887711 011111111122334445566666666555675543
No 153
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.67 E-value=55 Score=34.50 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=35.0
Q ss_pred cchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004727 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 20 ~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
..++.+.+.|+.|+.-|+..++++ |+...+........+...+.+.+|++.++.+||.+.
T Consensus 96 ~~~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~ 155 (283)
T PRK13209 96 QALEIMRKAIQLAQDLGIRVIQLA-----GYDVYYEQANNETRRRFIDGLKESVELASRASVTLA 155 (283)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEC-----CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 356678899999999999999874 332111001112223334456666665556776553
No 154
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=26.05 E-value=26 Score=19.94 Aligned_cols=12 Identities=50% Similarity=0.844 Sum_probs=9.9
Q ss_pred ecCccccccCCC
Q 004727 651 VLTPSYHAESYS 662 (733)
Q Consensus 651 ~~~ps~h~~~~~ 662 (733)
++||+-|.++|-
T Consensus 2 tltpgshvdsyv 13 (15)
T PF08111_consen 2 TLTPGSHVDSYV 13 (15)
T ss_pred cccCccchhhhc
Confidence 478999999883
No 155
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=21.45 E-value=1.2e+02 Score=32.64 Aligned_cols=95 Identities=26% Similarity=0.300 Sum_probs=55.4
Q ss_pred hhHHhhhcCCceeeeecCCCCCchhHH-----HHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCCh-------H
Q 004727 339 LWDYLRRSGASGFLLPLSGGADSSSVA-----AIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDS-------R 406 (733)
Q Consensus 339 L~dyl~~sg~~g~vl~LSGGiDSa~~A-----~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~-------~ 406 (733)
|+.++++. .-+.||++|+.|-..-+ .|+..|-..-.+++..|+..+ +|.++ +
T Consensus 199 lk~fi~ey--~pvlIgVdGaAD~l~~~GykP~lIvGdp~~i~~~aLR~ga~vv--------------lpad~dGhApGle 262 (395)
T COG4825 199 LKPFIKEY--QPVLIGVDGAADVLRKAGYKPQLIVGDPDQISTEALRCGAKVV--------------LPADADGHAPGLE 262 (395)
T ss_pred HHHHHHhh--CCEEEEccchHHHHHHcCCCcceeecCcchhhHHHHhccccee--------------eccCCCCCCchHH
Confidence 56666665 45888999998875433 233333333334444444322 23222 2
Q ss_pred HHHhhhheeeeccCcCChHHHHHHHHHHHHHhccccc-----ccchhHHHH
Q 004727 407 EFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHL-----DVSIDTVVS 452 (733)
Q Consensus 407 ~~~~~~~~~v~m~~~~ss~~t~~~A~~lA~~lGi~~~-----~i~I~~~~~ 452 (733)
.|-.--+.+.++|+.+||. +-|-.||..-|..|. ..+|+..++
T Consensus 263 RiQdLGvgAmTFP~~gsst---DlAllLAd~hga~~lv~vG~~~~~~~ffe 310 (395)
T COG4825 263 RIQDLGVGAMTFPAAGSST---DLALLLADHHGAALLVTVGHRANIETFFE 310 (395)
T ss_pred HHHhcCcceeeccCCCchh---hHHHHHhhccCcceeEecCCcccHHHHHh
Confidence 2222225677888777664 678999999999874 456666554
No 156
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=21.02 E-value=2.5e+02 Score=34.56 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=51.4
Q ss_pred ceeeeecCCCCCchhHHHHHhhhHHHHHHHHhcCchhhhhhHhHhccccCCCCCCChHHHHhhhheeeeccCcCC-----
Q 004727 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS----- 423 (733)
Q Consensus 349 ~g~vl~LSGGiDSa~~A~l~~~m~~~~~~al~~G~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~m~~~~s----- 423 (733)
..++|++||+..|.- ++...+|++. .+. .+ .++||..+...
T Consensus 249 e~ilvcI~~~~~~e~---liR~a~RlA~-~~~--a~----------------------------~~av~v~~~~~~~~~~ 294 (890)
T COG2205 249 ERILVCISGSPGSEK---LIRRAARLAS-RLH--AK----------------------------WTAVYVETPELHRLSE 294 (890)
T ss_pred ceEEEEECCCCchHH---HHHHHHHHHH-HhC--CC----------------------------eEEEEEeccccccccH
Confidence 579999999999865 4433344432 221 11 57777665442
Q ss_pred -hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Q 004727 424 -SQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 459 (733)
Q Consensus 424 -s~~t~~~A~~lA~~lGi~~~~i~I~~~~~~~~~~~~ 459 (733)
....+..+.+||++||....++.=+++.+++.+.-.
T Consensus 295 ~~~~~l~~~~~Lae~lGae~~~l~~~dv~~~i~~ya~ 331 (890)
T COG2205 295 KEARRLHENLRLAEELGAEIVTLYGGDVAKAIARYAR 331 (890)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHH
Confidence 234556788999999999999987777777655433
No 157
>KOG2774 consensus NAD dependent epimerase [General function prediction only]
Probab=20.65 E-value=3.5e+02 Score=28.39 Aligned_cols=42 Identities=24% Similarity=0.623 Sum_probs=33.2
Q ss_pred CCChhHHHHHHHhhhheeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccccHH
Q 004727 625 RLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKID 687 (733)
Q Consensus 625 ~~~~~~i~~~v~~f~~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~~~~ 687 (733)
.++|+|+++.+.+ -.|.||. +|.| |-|+-.-+ .||-.|..=|
T Consensus 285 sftpee~~~~~~~--------------~~p~~~i-~y~~-----~srq~iad-~wp~~~dds~ 326 (366)
T KOG2774|consen 285 SFTPEEIADAIRR--------------VMPGFEI-DYDI-----CTRQSIAD-SWPMSLDDSE 326 (366)
T ss_pred ccCHHHHHHHHHh--------------hCCCcee-eccc-----chhhhhhh-hcccccCchh
Confidence 5789999999887 4799998 5888 88988866 6887766443
No 158
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.48 E-value=78 Score=33.18 Aligned_cols=62 Identities=23% Similarity=0.005 Sum_probs=39.3
Q ss_pred cccchhhHHHHHHHHHHcCceeeeCcceeecccccccccccccchhhhHHHHHHHhccCCCCceeee
Q 004727 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (733)
Q Consensus 18 ~e~N~~ri~~~I~~A~~~gadLvVfPEl~ltGY~~~D~~~~~~~~~~~~~~L~~La~~~~~~~i~ii 84 (733)
.+.+++.+.+.|+.|+.-||+.++++-.. .||.. ...+..+...+.|.+|++.++++||.+.
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~----~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 146 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLT----PPNVIWGRLAENLSELCEYAENIGMDLI 146 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCC----CHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 34577889999999999999998775432 23321 1122234445567777766666776654
No 159
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=20.02 E-value=79 Score=35.95 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=41.1
Q ss_pred hcCCCChhHHHHHHHhhhheeeeccceeeecCccccccCCCCCCCccchhhhhhcccCccccccHHHHHHhhh
Q 004727 622 WGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKELD 694 (733)
Q Consensus 622 ~~~~~~~~~i~~~v~~f~~~~~~n~hK~~~~~ps~h~~~~~~d~~r~d~r~~~~~~~~~~~~~~~~~~~~~~~ 694 (733)
|-+.++.+|+..++|+|+.+.- +++|-||---+-.|.|||- -|..| +++.|++..-
T Consensus 109 fv~~l~eee~~~klk~Fl~~lD------RTi~DsF~HaNIGP~dt~~-grlIL----------~~~~EL~~~~ 164 (487)
T PF11230_consen 109 FVQGLDEEEAYKKLKLFLIHLD------RTIPDSFCHANIGPEDTRA-GRLIL----------RVDAELQQAV 164 (487)
T ss_pred cccCCCHHHHHHHHHHHHHHhh------ccCcchhhccCCCCcccHH-HHHHH----------HHHHHHhccC
Confidence 3357899999999999987544 3489999666899999885 35555 5666666543
Done!