RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004727
(733 letters)
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 683 bits (1765), Expect = 0.0
Identities = 181/696 (26%), Positives = 291/696 (41%), Gaps = 70/696 (10%)
Query: 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
+ +++ +N +D++ N+KNI ++I AK A I PEL ITGYGCED FL
Sbjct: 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDW 62
Query: 61 TVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
A E ++ I S G+P+ YNC L N + K +LAN+G
Sbjct: 63 VAETAIEYCFEIA--ASCTDITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEG 120
Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
+ E RWFTAW + + + PFG D + EICE+ +
Sbjct: 121 VHYETRWFTAWPR---------NHTTTFLYNDVKYPFGDVLYNVKDARIGFEICEDAWRT 171
Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
G + +N S SH K R I + Y+Y+N G + GR+
Sbjct: 172 DRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI 231
Query: 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV 300
+DG + G +I + + S K+V ++ A + D+ ++
Sbjct: 232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLTQD------------- 278
Query: 301 AVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
E E L+DY+R+S + GF+L LSGGAD
Sbjct: 279 -----------------------DLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGAD 315
Query: 361 SSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGH---YANGEFPTDSREFAKRIFYTVF 417
SS+ A +V M + +KE+ K++ + + F +++ T +
Sbjct: 316 SSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAY 375
Query: 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVE 477
+ NS ET AK LA+ IG+ + S+D + + + + + + +
Sbjct: 376 QSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPL------TWEKD 429
Query: 478 NLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADIN 537
++ LQNIQAR R + +ML N L++ +SN EG GY T ++ I
Sbjct: 430 DITLQNIQARGRAPIIWMLT-------NVKQ-ALLITTSNRSEGDVGYATMDGDTAGGIA 481
Query: 538 PIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEEL 597
PI + K +R++LRWA + L + PTAEL P S Y+Q DE D+ M Y+ L
Sbjct: 482 PIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAELRP--SEYTQTDERDL-MPYDVL 538
Query: 598 SVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYH 657
+ R PV ++ L T +E VK+FF+ +SIN+ K L PS+H
Sbjct: 539 ARIERKAIKERLSPVQVYTALLTEGP--YTKNEFKYWVKKFFRLWSINQWKRERLAPSFH 596
Query: 658 AESYSPDDNRFDLRQFLYNARWPYQFRKIDELVKEL 693
+ ++ D + L + + + +D+
Sbjct: 597 MDDFNIDPRSWYRFPILSSG-FAKELNDLDQEGHHH 631
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase,
glutaminase, glutamine-dependent synthetase, ligase;
2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 615 bits (1587), Expect = 0.0
Identities = 136/733 (18%), Positives = 245/733 (33%), Gaps = 108/733 (14%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++VA C + D N ++ + + GA + + PEL ++GY ED L+ +
Sbjct: 12 FVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
Query: 63 THAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNY 122
+ L DL+ + G P+ YN V+ ++ + PK +L +
Sbjct: 72 DAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREF 131
Query: 123 RELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI----QFLDTAVAAEICEELF 178
E R + V FG + + EI E++F
Sbjct: 132 YERRQMAPGDGERGTIRI----------GGADVAFGTDLLFAASDLPGFVLHVEIAEDMF 181
Query: 179 TPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDGG 237
P+PP A+ AL G V N SGS + + + R SA+ Y+Y+ +G
Sbjct: 182 VPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTT 241
Query: 238 RLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKI 297
L +DG + + NG ++A+ +F K V VA VD + + R + +F + ++
Sbjct: 242 DLAWDGQTMIWENGALLAESERFP-KGVRRSVADVDTELLRSERLRMGTFDDNRRHHREL 300
Query: 298 PSVAVPYNL-CQPFNLKMSLSSPLKINYHSP---------EEEIAFGPGCWLWDYLRRSG 347
+ P + L ++ P E L LR
Sbjct: 301 TESFRRIDFALDPPAGDIGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALD 360
Query: 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407
++ +SGG DS+ + D
Sbjct: 361 YPKVVIGVSGGLDSTHALIVATHAM-------------------------------DREG 389
Query: 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPC 467
+ + + + T+ A KLA +G ++ I L
Sbjct: 390 RPRSDILAFALPGFATGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIG-------- 441
Query: 468 YKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLT 527
+ G V ++ +N+QA +R F +A N+ G +VLG+ ++ E G+ T
Sbjct: 442 HPYSVGEKVYDVTFENVQAGLRTDYLFRIA-------NQRGG-IVLGTGDLSELALGWST 493
Query: 528 KYDCSS--ADINPIGSISKQDLRTFLRWAATHLGYSS-----LAEIEAAPPTAELEPIRS 580
Y + N + K ++ +RW + + L + T EL P
Sbjct: 494 -YGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPELIPTGE 552
Query: 581 NYSQLDEVDMG-MTYEELSVYGRLRKVFHCGPVTMFKNLCYRWG---------------- 623
Q E +G ++ S++ LR F P + + W
Sbjct: 553 EELQSSEAKVGPFALQDFSLFQVLRYGF--RPSKIAFLAWHAWNDAERGNWPPGFPKSER 610
Query: 624 ARLTPSEVAEKVKQF----FKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNARW 679
+ +E+ ++ F + + R + H + SP R D R +
Sbjct: 611 PSYSLAEIRHWLQIFVQRFYSFSQFKRSALPNGPKVSHGGALSP---RGDWRAPSDMSAR 667
Query: 680 PYQFRKIDELVKE 692
+ +ID V +
Sbjct: 668 IW-LDQIDREVPK 679
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 207 bits (529), Expect = 2e-58
Identities = 124/615 (20%), Positives = 202/615 (32%), Gaps = 126/615 (20%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE---LD 60
L++A +++ D N + I + E GA + PE+ +TGY ED L ++
Sbjct: 5 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVE 64
Query: 61 TVTHAWECLKDLLLGDWTDGILCSFGMPV----------IKGSERYNCQVLCLNRKIIMI 110
A L L + + G N + ++ +
Sbjct: 65 ASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALT 124
Query: 111 RPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVA 170
K L N G + E R+F ++ +A
Sbjct: 125 FAKHHLPNYGVFDEFRYFVPGDT-------------------------MPIVRLHGVDIA 159
Query: 171 AEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230
ICE+L+ G + ++ + S ++ K D R+ G Y
Sbjct: 160 LAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLA 219
Query: 231 HQGCDGGR--LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287
GG+ L FDG S VV +G+++A+ QF VV +DL A +
Sbjct: 220 -MI--GGQDELVFDGDSIVVDRDGEVVARAPQF---SEGCVVLDLDLPAAEAEPPTGVVD 273
Query: 288 QEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSG 347
+ I +P + + + +EE+ L Y+ ++G
Sbjct: 274 DGLRIDRLVISEEPLPAYEAEL--------AGGYADRLDADEEVYSALVVGLRAYVAKNG 325
Query: 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407
L+ LSGG DS+ VAAI DA+
Sbjct: 326 FRSVLIGLSGGIDSALVAAIA-------------------CDALG--------------- 351
Query: 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPC 467
A+ + Y V M S+ SS ++ A +LA G VSI+ + A+++
Sbjct: 352 -AQNV-YGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASL--------- 400
Query: 468 YKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLT 527
+ L +N+Q+R+R ++ N+ G ++VL N E GY T
Sbjct: 401 -------GLTGLAEENLQSRLRGTTLMAIS-------NQEG-HIVLAPGNKSELAVGYST 445
Query: 528 KYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAE-----IEAAPPTAELEPIRSNY 582
Y S PI + K + W PP+AEL P
Sbjct: 446 LYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRP----- 500
Query: 583 SQLDEVDMGMTYEEL 597
Q+D D Y L
Sbjct: 501 GQVDT-DSLPDYPVL 514
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Length = 565
Score = 163 bits (415), Expect = 4e-43
Identities = 123/619 (19%), Positives = 199/619 (32%), Gaps = 151/619 (24%)
Query: 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
++A LN DF N+ I + A +AGA + PEL ++GY ED L
Sbjct: 4 SMKTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPA 63
Query: 61 TVTHAWECLKDL------------LLG-----DWTDGILCSFGMPVIKGSERYNCQVLCL 103
+ L +L L+G DG + + YN L +
Sbjct: 64 FYAASDAALAELAAQLKPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIV 123
Query: 104 NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163
++ K L N + E R+F F
Sbjct: 124 GGEVAGTYRKQDLPNTEVFDEKRYFAT--------------------DAAPYVFELN--- 160
Query: 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223
ICE+++ G +V + +GS + + K RI + G
Sbjct: 161 --GVKFGVVICEDVWHASAA-QLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETG 217
Query: 224 GVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282
+Y N G + FDG S V+ G+++A+ Q
Sbjct: 218 LPMVYVNLVGGQDELV-FDGGSFVLDGAGELVAKMPQ----------------------- 253
Query: 283 SISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDY 342
F+E + + A+P + S E ++ + DY
Sbjct: 254 ----FEEGNAIVEFDGARALPAAIAPAL---------------SVEAQVYRALVLGVRDY 294
Query: 343 LRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFP 402
+ ++G G ++ LSGG DS+ V A+ G E+V+A
Sbjct: 295 IGKNGFPGAIIGLSGGVDSALVLAVAVDAL---------GAERVRA-------------- 331
Query: 403 TDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 462
V M S ++ + A +A +G + +++I + AF +
Sbjct: 332 -------------VMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFDAFRASLAAEF 378
Query: 463 GKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGL 522
E+ +NIQARIR L L+ NK G +VL + N E
Sbjct: 379 AGLA----------EDATEENIQARIRGTLLMALS-------NKFG-SIVLTTGNKSEMA 420
Query: 523 RGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAA----PPTAELEPI 578
GY T Y + I I+K + R+ Y + P+AEL
Sbjct: 421 VGYCTLYGDMAGGFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAELRE- 479
Query: 579 RSNYSQLDEVDMGMTYEEL 597
+Q D+ D Y+ L
Sbjct: 480 ----NQTDQ-DSLPPYDVL 493
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 134 bits (339), Expect = 2e-35
Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 86/315 (27%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI--SNGDEQVKADAIRIGH 395
+L Y++++GA GF+L +SGG DS + G + QL V+ I GD Q A
Sbjct: 28 FLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIREEGGDAQFIA------- 76
Query: 396 YANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIG-SWHLDVSIDTVVSAF 454
V + E A+ I I + VSAF
Sbjct: 77 --------------------VRLPHGTQQDEDD--AQLALKFIKPDKSWKFDIKSTVSAF 114
Query: 455 LSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLG 514
+Q TG + + + N++AR RM+ + + LVLG
Sbjct: 115 SDQYQQETGDQ----------LTDFNKGNVKARTRMIAQYAIGGQ----EG----LLVLG 156
Query: 515 SSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAE 574
+ + E + G+ TKY AD+ P+ ++K+ RT L+ LG + + PTA+
Sbjct: 157 TDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLK----ELG--APERLYLKEPTAD 210
Query: 575 LEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEK 634
L + Q DE ++G++Y+E+ Y ++V ++V+E
Sbjct: 211 LLDEKPQ--QSDETELGISYDEIDDYLEGKEV---------------------SAKVSEA 247
Query: 635 VKQFFKYYSINRHKM 649
+++ YS+ HK
Sbjct: 248 LEKR---YSMTEHKR 259
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide
alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 133 bits (336), Expect = 3e-35
Identities = 68/321 (21%), Positives = 120/321 (37%), Gaps = 92/321 (28%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
WL D A GF++ LSGG DS A+ +
Sbjct: 19 WLSDSCMNYPAEGFVIGLSGGIDS----AVAASLAVK----------------------- 51
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
+ + S+N+ + A +L + + H +SI AFL+
Sbjct: 52 -----------TGLPTTALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLAS 100
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
Q+ T + N + + N QAR+RM+ + A +N +V+G+ N
Sbjct: 101 TQSFTNLQN--------NRQLVIKGNAQARLRMMYLYAYAQQ----YN----RIVIGTDN 144
Query: 518 VDEGLRGYLTKY-DCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELE 576
E GY TK+ D +ADI P+ ++ K + + +L I P+A L
Sbjct: 145 ACEWYMGYFTKFGD-GAADILPLVNLKKSQVFELGK----YLD--VPKNILDKAPSAGLW 197
Query: 577 PIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVK 636
Q DE +MG+TY+E+ + ++V ++ E++
Sbjct: 198 Q-----GQTDEDEMGVTYQEIDDFLDGKQV---------------------SAKALERIN 231
Query: 637 QFFKYYSINRHKMTV-LTPSY 656
+++ + HK + LTP++
Sbjct: 232 ---FWHNRSHHKRKLALTPNF 249
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 131 bits (331), Expect = 3e-34
Identities = 67/312 (21%), Positives = 112/312 (35%), Gaps = 76/312 (24%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
++ DYLR +G +L +SGG DS + G + QL V+ + +
Sbjct: 36 FVADYLRTAGLRACVLGISGGIDS----STAGRLAQLAVERLRASGYDAR---------- 81
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
F + + E + LA L V + A L+
Sbjct: 82 ---------------FVAMRLPYGAQHDEAD-ARRALAFVRADETLTVDVKPAADAMLAA 125
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
+ + L NI+AR RM+ + +A N +V+G+ +
Sbjct: 126 LAAGGLAYLDHAQQ------DFVLGNIKARERMIAQYAVAGA----RN----GVVIGTDH 171
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E + G+ TK+ AD+ P+ ++K+ +R R LG + PTA+LE
Sbjct: 172 AAESVMGFFTKFGDGGADVLPLAGLTKRRVRALAR----MLGAD--EPLVLKTPTADLET 225
Query: 578 IRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQ 637
+R + DE G+TYE++ + + + VAE V +
Sbjct: 226 LRPQ--RPDEHAYGITYEQIDDFLEGKPM---------------------DDAVAETVLR 262
Query: 638 FFKYYSINRHKM 649
F Y RHK
Sbjct: 263 F---YDATRHKR 271
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid,
center for structural genomics O infectious diseases,
alpha beta; 2.40A {Vibrio cholerae}
Length = 279
Score = 129 bits (327), Expect = 1e-33
Identities = 58/314 (18%), Positives = 110/314 (35%), Gaps = 72/314 (22%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
++ L + +L +SGG DS G + QL V+E++ +
Sbjct: 30 FIKRKLTEARYKSLVLGISGGVDS----TTCGRLAQLAVEELNQQHNTTEYQ-------- 77
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIG-SWHLDVSIDTVVSAFLS 456
F V + E A+ I + + V+I V +
Sbjct: 78 ---------------FIAVRLPYGEQKDEDE--AQLALSFIRPTHSVSVNIKAGVDGLHA 120
Query: 457 LFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSS 516
+ + N++AR RMV + +A LVLG+
Sbjct: 121 ASHHALAN--TGLIPSDPAKVDFIKGNVKARARMVAQYEIAGY----VG----GLVLGTD 170
Query: 517 NVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELE 576
+ E + G+ TK+ + D+ P+ ++K+ +R + LG ++ PTA+LE
Sbjct: 171 HSAENITGFYTKFGDGACDLAPLFGLNKRQVRLLAK----TLGAPE--QLVYKTPTADLE 224
Query: 577 PIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVK 636
+ + DE + +TYE++ + + V P+EV++++
Sbjct: 225 ELAPQ--KADEAALNLTYEQIDDFLEGKAV---------------------PAEVSQRLV 261
Query: 637 QFFKYYSINRHKMT 650
Y +HK
Sbjct: 262 AI---YHATQHKRQ 272
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 123 bits (310), Expect = 1e-31
Identities = 62/315 (19%), Positives = 108/315 (34%), Gaps = 82/315 (26%)
Query: 338 WLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHY 396
+L YL+ +L +SGG DS + G +CQ+ + E+
Sbjct: 29 FLKSYLQTYPFIKSLVLGISGGQDS----TLAGKLCQMAINELRLETGNESLQ------- 77
Query: 397 ANGEFPTDSREFAKRIFYTVFM-GSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFL 455
F V + + ++ A L V+I V A
Sbjct: 78 ----------------FIAVRLPYGVQADEQDCQDAIAFIQPDRV--LTVNIKGAVLASE 119
Query: 456 SLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGS 515
+ + G + + N +AR RM + +A + + +V+G+
Sbjct: 120 QALR-----------EAGIELSDFVRGNEKARERMKAQYSIAGM----TS----GVVVGT 160
Query: 516 SNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAEL 575
+ E + G+ TKY DINP+ ++K+ + L L + PTA+L
Sbjct: 161 DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLA----ALACPE--HLYKKAPTADL 214
Query: 576 EPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKV 635
E R + DEV +G+TY+ + Y + V P +VA +
Sbjct: 215 EDDRPSLP--DEVALGVTYDNIDDYLEGKNV---------------------PQQVARTI 251
Query: 636 KQFFKYYSINRHKMT 650
+ + Y HK
Sbjct: 252 ENW---YLKTEHKRR 263
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 119 bits (302), Expect = 1e-30
Identities = 55/261 (21%), Positives = 100/261 (38%), Gaps = 71/261 (27%)
Query: 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHY 396
++ + ++ S + G +L LSGG DS+ VA + A+
Sbjct: 15 DFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------------------KRAL----- 50
Query: 397 ANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLS 456
E + + + M ++ S++ A +L ++ + + I +++ AF+
Sbjct: 51 --KE----------NV-FALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIK 97
Query: 457 LFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSS 516
+ + L N ARIRM L + + LV+G+S
Sbjct: 98 QSENT---------------TLVSLGNFAARIRMSLLYDYS-------ALKN-SLVIGTS 134
Query: 517 NVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELE 576
N E L GY T Y + NPIGS+ K ++ ++ L P+A+L
Sbjct: 135 NKSELLLGYGTIYGDLACAFNPIGSLYKSEIYALAKY----LNLHE--NFIKKAPSADLW 188
Query: 577 PIRSNYSQLDEVDMGMTYEEL 597
+Q DE D+G +Y ++
Sbjct: 189 E-----NQSDEADLGFSYTKI 204
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 114 bits (287), Expect = 2e-28
Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 71/260 (27%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
+L +++ G + LSGG DS+ V +
Sbjct: 15 FLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------------------QKV------- 48
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
F + + + M S S E + A L ++ + + SI + F S
Sbjct: 49 ----------FKENA-HALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSH 97
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
F+ + R N AR+RM + + K LV+G+SN
Sbjct: 98 FKDASLTR---------------KGNFCARLRMAFLYDYS-------LKSD-SLVIGTSN 134
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E + GY T + + INPIG + K ++ R L +I PP+A+L
Sbjct: 135 KSERMLGYGTLFGDLACAINPIGELFKTEVYELARR----LNIPK--KILNKPPSADLFV 188
Query: 578 IRSNYSQLDEVDMGMTYEEL 597
Q DE D+G Y +
Sbjct: 189 -----GQSDEKDLGYPYSVI 203
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 112 bits (283), Expect = 5e-28
Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 71/261 (27%)
Query: 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHY 396
+ +++R G +G ++ +SGG DS++VA + K + G E+V
Sbjct: 11 ERILEFIREKGNNGVVIGISGGVDSATVAYLA-------TKAL--GKEKVLG-------- 53
Query: 397 ANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLS 456
+ M + AK +A+++G + ++I +V +F+
Sbjct: 54 -------------------LIMPY--FENKDVEDAKLVAEKLGIGYKVINIKPIVDSFVE 92
Query: 457 LFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSS 516
N++ GL NI +R RM++ + A N G +VLG+S
Sbjct: 93 NL--------------ELNLDRKGLGNIMSRTRMIMLYAHA-------NSLG-RIVLGTS 130
Query: 517 NVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELE 576
N E L GY TK+ ++D PI ++ K ++ + +G I P+A L
Sbjct: 131 NRSEFLTGYFTKWGDGASDYAPIINLYKTEVWEIAKR----IGVPE--RIVKKKPSAGLW 184
Query: 577 PIRSNYSQLDEVDMGMTYEEL 597
Q DE ++G++Y L
Sbjct: 185 E-----GQTDEDELGISYNLL 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.1 bits (199), Expect = 7e-16
Identities = 83/455 (18%), Positives = 144/455 (31%), Gaps = 139/455 (30%)
Query: 286 SFQEQASCKTKIPSVAVPYNLC--QPF-NLKMSLSSPLKINYHSPEEEIA-FGPGCWLWD 341
+ EQ V YN+ QP+ L+ +L L+ P + + G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LR-----PAKNVLIDGVL----- 159
Query: 342 YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEF 401
G+ + VA V C +V+
Sbjct: 160 ----------------GSGKTWVALDV---CL---------SYKVQ-------------- 177
Query: 402 PTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEI---------GSWHLDVSIDTVVS 452
+ +IF+ + + + NS + + +KL +I S ++ + I ++ +
Sbjct: 178 ----CKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 453 AFLSLFQTLTGKRPCYKV-DGGSNVENLGLQ---NIQARI------RMVLAFMLASL--- 499
L ++ + C V NV+N N+ +I + V F+ A+
Sbjct: 233 ELRRLLKSKPYEN-CLLVLL---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 500 LPWVHNKPGFYLVLGSSNVDEGLRGYLTKY-DCSSAD-------INP-----IGSISKQD 546
+ H+ DE L KY DC D NP I +
Sbjct: 289 ISLDHHSMTLTP-------DEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 547 LRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRK- 605
L T+ W H+ L I I S+ + L+ + ++ LSV
Sbjct: 341 LATWDNWK--HVNCDKLTTI-----------IESSLNVLEPAEYRKMFDRLSV---FPPS 384
Query: 606 VFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFKYYSINRH--KMTVLTPSYHAESYSP 663
+ L W + S+V V + KY + + + T+ PS + E
Sbjct: 385 A----HIPT-ILLSLIWFD-VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 664 DDNRFDL-RQFL--YNARWPYQFRKIDELVKELDG 695
+N + L R + YN P F D + LD
Sbjct: 439 LENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQ 471
Score = 57.2 bits (137), Expect = 2e-08
Identities = 92/715 (12%), Positives = 201/715 (28%), Gaps = 231/715 (32%)
Query: 10 NLNNWALDFDCN-LKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWEC 68
+ + +FDC ++++ +SI +E +I + T
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-------------------- 64
Query: 69 LKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWF 128
L W L S K E V + R NY ++
Sbjct: 65 --LRLF--W---TLLS------KQEEMVQKFVEEVLRI--------------NY---KF- 93
Query: 129 TAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLA 188
L + I +Q S+ +I+ D L+ A
Sbjct: 94 -------------LMSPIKTEQRQPSMMTRM-YIEQRD---------RLYNDNQVFAKYN 130
Query: 189 LNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV 248
++ ++ + +LR+ +R + V+
Sbjct: 131 VSRLQ-------PYLKLRQALLELR----------------PAKN-------------VL 154
Query: 249 VNGDMIAQGSQFSLKDVEIVVAQV--DLDAVAGFRGSIS--SFQEQASCKTKIPSVAVPY 304
++G ++ G K V V I + +C + + +
Sbjct: 155 IDG-VLGSG-----KTW--VALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQ 203
Query: 305 NLC----QPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
L + + SS +K+ HS + E L L+ LL L +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--------LRRLLKSKPYENCLLVLLNVQN 255
Query: 361 SSSVAAI-VGCMCQLVV----KEISNGDEQVKADAIRIGHYANGEFPTDSRE-FAKRIFY 414
+ + A + C++++ K++++ I + H++ P + + K
Sbjct: 256 AKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---- 309
Query: 415 TVFMGSENSS--QETR--------MLAKKLADEIGSW----HLDVS-IDTVVSAFLSLFQ 459
++ +E ++A+ + D + +W H++ + T++ + L++ +
Sbjct: 310 --YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 460 TLTGKRPCYK--------VDGGSNV-ENLGLQNIQARIRMVLAFMLASLLPWVHNK---- 506
R + + + + I++ + +V+ + L K
Sbjct: 368 P-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 507 --PGFYLVLGSSNVDEGL--RGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSS 562
P YL L +E R + Y+ + L + H+G+
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYS---HIGH-H 480
Query: 563 LAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRW 622
L IE + ++ L+ +K+ H W
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLE-----------------QKIRHDSTA---------W 514
Query: 623 GARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNA 677
A + ++Q Y + + P Y + FL
Sbjct: 515 NA---SGSILNTLQQLKFY----KPYICDNDPKYERLVN-------AILDFLPKI 555
Score = 52.5 bits (125), Expect = 5e-07
Identities = 96/675 (14%), Positives = 192/675 (28%), Gaps = 228/675 (33%)
Query: 55 HFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKI--IMIRP 112
H ++ +T H ++ KD+L + D + +F ++ + +L +I I++
Sbjct: 5 HHMDFETGEHQYQY-KDILS-VFEDAFVDNFDCKDVQDMPK---SILS-KEEIDHIIMSK 58
Query: 113 KLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAE 172
A G R L W KQ++ ++ F + L+ Y F+ +
Sbjct: 59 D---AVSGTLR-LFWTLLSKQEEMVQKF-----VEEVLRIN-----YKFL-------MSP 97
Query: 173 ICEELFTPIPPHA------DLALNGVEVF--MNAS--GSHHQLRKLDYRIRAFISATHSR 222
I E P D N +VF N S + +LR+ +R
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--------- 148
Query: 223 GGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQV--DLDAVAGF 280
+ V+++G ++ G K V V
Sbjct: 149 -------PAKN-------------VLIDG-VLGSG-----KTW--VALDVCLSYKVQCKM 180
Query: 281 RGSIS--SFQEQASCKTKIPSVAVPYNLC----QPFNLKMSLSSPLKINYHSPEEEI--- 331
I + +C + + + L + + SS +K+ HS + E+
Sbjct: 181 DFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 332 -----------------------AFGPGC---------WLWDYLRRSGASGFLL-PLSGG 358
AF C + D+L + + L S
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 359 ---ADSSSV-AAIVGC--------MCQ---LVVKEISNGDEQVKADAIRIGHYANGEF-- 401
+ S+ + C + + I+ E ++ ++ +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCDK 354
Query: 402 -------------PTDSREFAKRIFYTVFMGSEN-------------SSQETRMLAKKLA 435
P + R+ R+ VF S + + ++ KL
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 436 D-------------EIGSWHLDVSIDTVVSAFL--SLFQTLTGKRPCYKVDGGSNVEN-- 478
I S +L++ + L S+ + + D
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQ 471
Query: 479 -----LG--LQNIQARIRMVLAFMLASL-LPWVHNK-----PGFYLVLGSSNVDEGLRGY 525
+G L+NI+ + F + L ++ K + N + L+ Y
Sbjct: 472 YFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 526 LTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQL 585
Y C D +P + FL +L I S Y+ L
Sbjct: 531 K-PYIC---DNDPKYERLVNAILDFLPKIEENL-------------------ICSKYTDL 567
Query: 586 DEVDMGMTYEELSVY 600
+ + + E+ +++
Sbjct: 568 --LRIALMAEDEAIF 580
Score = 31.7 bits (71), Expect = 1.1
Identities = 35/231 (15%), Positives = 59/231 (25%), Gaps = 88/231 (38%)
Query: 499 LLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHL 558
+L + F +V + + L+K + I LR F W
Sbjct: 21 ILS--VFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSKDAVSGTLRLF--WT---- 70
Query: 559 GYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNL 618
+ S + ++ V LR N
Sbjct: 71 -------------------LLSKQEE--------MVQKF-VEEVLR-----------IN- 90
Query: 619 CYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVLTPSYHAESYSPDDNRF--DLRQFL-Y 675
Y++ S + + +Q PS Y +R D + F Y
Sbjct: 91 -YKFLM----SPIKTEQRQ----------------PSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 676 NARWPYQFRKIDELVKELDGEKVPFSESGDHEKMGTTLDGGGGMG--VIAA 724
N + K+ + + EL K +DG G G +A
Sbjct: 130 NVSRLQPYLKLRQALLELRPAK------------NVLIDGVLGSGKTWVAL 168
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 52.2 bits (126), Expect = 2e-07
Identities = 67/303 (22%), Positives = 106/303 (34%), Gaps = 83/303 (27%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC--EDHFLEL- 59
++KVA +N L+ D N ++ I A + GA + + PEL TGY + E+
Sbjct: 1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIA 60
Query: 60 ------DTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPK 113
+T T + +D G+ G G YN V+ + P+
Sbjct: 61 QKIPEGETTTFLMDVARDT-------GVYIVAGTAEKDGDVLYNSAVV--------VGPR 105
Query: 114 LWLANDGNYR-------ELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFG-YGFIQFL 165
++ G YR E +F G GF F
Sbjct: 106 GFI---GKYRKIHLFYREKFFFEP---------------------------GDLGFRVF- 134
Query: 166 DTA---VAAEICEELFTPIPPHADLALNGVEVFMN--ASGSHHQLRKLDYRIRAFISATH 220
D V IC + F P LAL G +V + + IRA +
Sbjct: 135 DLGFMKVGVMICFDWFFPESART-LALKGADVIAHPANLVMPYA--PRAMPIRALEN--- 188
Query: 221 SRGGVYM-YSNHQGCDGGRLYFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVA 278
VY ++ G + G L F G S + ++++ S+ + E+ VA++DL V
Sbjct: 189 ---KVYTVTADRVGEERG-LKFIGKSLIASPKAEVLSMASE---TEEEVGVAEIDLSLVR 241
Query: 279 GFR 281
R
Sbjct: 242 NKR 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 6e-06
Identities = 116/695 (16%), Positives = 188/695 (27%), Gaps = 272/695 (39%)
Query: 127 WFTAWKQKDQL-EDFQ--LP---NEISVALKQKSVP--FGYGFIQFLDTAVAAEICEELF 178
+F A QL E F LP + + + G F+ ++ + V + F
Sbjct: 27 FFIA----SQLQEQFNKILPEPTEGFAADDEPTTPAELVGK-FLGYVSSLVEPSKVGQ-F 80
Query: 179 TPIPPHADLALNGVE-VFMNASGSH-----------HQLRKLDYRIRAFISATHSRGGVY 226
+ +L L E ++ + H L K I+ +I+A +
Sbjct: 81 DQV---LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 227 MYSNH-----QGCDGG--RLY--FDGCSCVVVNGDMIAQGSQ---FS-LKDV-EIVVAQV 272
+ G +L F G QG+ F L+D+ +
Sbjct: 138 D-KKSNSALFRAVGEGNAQLVAIFGG------------QGNTDDYFEELRDLYQT----- 179
Query: 273 DLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIA 332
+ + + ++ L + + E
Sbjct: 180 -------YHVLVGDLIKFSA------------ETLSE------LIR------TTLDAEKV 208
Query: 333 FGPGC----WL--------WDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIS 380
F G WL DYL S PL G + QL
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPIS---CPLIG-------------VIQLA----- 247
Query: 381 NGDEQVKADAIRIGHYAN-----GEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLA 435
HY G P + + G+ SQ + A +A
Sbjct: 248 --------------HYVVTAKLLGFTPGE--------LRSYLKGATGHSQGL-VTAVAIA 284
Query: 436 DEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFM 495
E SW + +V A LF G R CY+ +++ L++ V + M
Sbjct: 285 -ETDSW--ESFFVSVRKAITVLF--FIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 496 LASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAA 555
L+ + + E ++ Y+ K + + IS L A
Sbjct: 339 LS--------------ISNLT--QEQVQDYVNKTNSHLPAGKQV-EIS-------LVNGA 374
Query: 556 THL---GY-SSLA----EIEAAPPTAELEPIRSNYSQLDEVDMGMTYEELSVYGRLRKV- 606
+L G SL + A + L+ R +S+ +L R V
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE----------RKLKFSNRFLPVA 424
Query: 607 --FHCGPVTMFKNLCYRWGARLTPSEVAEKVKQ--FFKYYSINRHKMTVLTPSYHAESYS 662
FH L P ++ + + S N + + P Y
Sbjct: 425 SPFHS-H--------L-----LVP--ASDLINKDLVKNNVSFNAKDIQI--PVYDTF--- 463
Query: 663 PDDNRFDLRQFLYN-------------ARWPYQFRKIDELVKE-----LD-GEKVPFSES 703
D DLR + +W + LD G P S
Sbjct: 464 --DGS-DLRVLSGSISERIVDCIIRLPVKWE-------TTTQFKATHILDFG---PGGAS 510
Query: 704 G-----DHEKMGTTLDGGGGMGVIAAGS--GNPKS 731
G K GT G+ VI AG+ NP
Sbjct: 511 GLGVLTHRNKDGT------GVRVIVAGTLDINPDD 539
Score = 32.7 bits (74), Expect = 0.60
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 21/69 (30%)
Query: 553 W--AATH----LGYSSLAEIEAAPPTAEL-------EPIRSNYSQLDEVDMGMTYEELS- 598
W A H G+S L + P + + IR NY M +E +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-------SAMIFETIVD 1698
Query: 599 VYGRLRKVF 607
+ K+F
Sbjct: 1699 GKLKTEKIF 1707
Score = 30.8 bits (69), Expect = 2.3
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 52/143 (36%)
Query: 583 SQLDEVDMGMTYEELSVYGRLRKVFHCGPVTMFKNLCYRWGARLTPSEVAEKVKQFFK-- 640
SQ E MGM L K A+ +V + FK
Sbjct: 1626 SQ--EQGMGMD---------LYKTS---KA-----------AQ----DVWNRADNHFKDT 1656
Query: 641 Y-YSI------NRHKMTVLTPSYHAESYSPDDNRFDLRQFLYNA----RWPYQFRKIDEL 689
Y +SI N +T+ + +R+ Y+A K +++
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKR---------IRE-NYSAMIFETIVDGKLKTEKI 1706
Query: 690 VKELDGEKVPFSESGDHEKMGTT 712
KE++ ++ + + T
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSAT 1729
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 42.6 bits (101), Expect = 3e-04
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 22/110 (20%)
Query: 187 LALNGVEV------FMNASGSHHQLRKLDYRIRAFISATHSRGGVYM-YSNHQGCDGGRL 239
A G ++ S + RA + G+ + Y+NH G +GG +
Sbjct: 177 AAARGAQLVLVPTALAGDETSVPGILL---PARAVEN------GITLAYANHCGPEGGLV 227
Query: 240 YFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288
+ G S VV G + + + ++V + + S Q
Sbjct: 228 FD-GGSVVVGPAGQPLGELGV----EPGLLVVDLPDQSQDAGSDSADYLQ 272
Score = 39.1 bits (92), Expect = 0.003
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL 59
+++A LD NL I ++ RA E GA + L PEL GY ++
Sbjct: 21 MRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQV 76
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A
{Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A*
1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Length = 303
Score = 42.0 bits (99), Expect = 4e-04
Identities = 53/320 (16%), Positives = 103/320 (32%), Gaps = 67/320 (20%)
Query: 2 RLLKVATCNLNN--WALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL 59
R + +A A + + + + + +A GA + PEL +T + HF +
Sbjct: 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61
Query: 60 DTVTHAWECLKDLLLGDWTD---------GILCSFGM----PVIKGSERYNCQVLCLNRK 106
+ +E G GI + G R+N +L
Sbjct: 62 AELDSFYETEMP---GPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSIL----- 113
Query: 107 IIMIRPKLWLANDGN----YRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162
+ G YR++ ++++ K+ P GF
Sbjct: 114 ---------VDKSGKIVGKYRKIHLP-------GHKEYEAYRPFQHLEKRYFEPGDLGFP 157
Query: 163 QFLDTA---VAAEICEEL-FTPIPPHA--DLALNGVEVFMN--ASGSHHQLRKLDYRIRA 214
+ D + I + + P A + L G E+ + +H+ + +
Sbjct: 158 VY-DVDAAKMGMFIANDRRW----PEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTS 212
Query: 215 FISATHSRG-----GVYM-YSNHQGCDGGRLYFDGCSCVVV-NGDMIAQGSQFSLKDVEI 267
F + G + + G + + G SC+V G+++A + + E+
Sbjct: 213 FHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLL-GHSCIVAPTGEIVALTTT---LEDEV 268
Query: 268 VVAQVDLDAVAGFRGSISSF 287
+ A VDLD R I +F
Sbjct: 269 ITAAVDLDRCRELREHIFNF 288
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori
aliphatic amidase, hydrolase; 1.75A {Helicobacter
pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Length = 334
Score = 38.9 bits (91), Expect = 0.004
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 21/103 (20%)
Query: 187 LALNGVEV------FMNASGSHHQLRKLDYRIRAFISATHSRGGVYM-YSNHQGCDGGRL 239
A G V + L R A+ + +Y N G D
Sbjct: 178 AAYKGCNVYIRISGYSTQVNDQWIL---TNRSNAWHN------LMYTVSVNLAGYDNV-F 227
Query: 240 YFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281
Y+ G + +G + QG + EIV ++ R
Sbjct: 228 YYFGEGQICNFDGTTLVQGHR---NPWEIVTGEIYPKMADNAR 267
Score = 33.2 bits (76), Expect = 0.28
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 1 MRLLKVA----TCNLNNWALDFDCNLKNIKESIG--RAKEAGAVIRLGPELEITGYGCED 54
+ VA + N D D N+++I ++ +A G + + PE G
Sbjct: 11 IEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAK 70
Query: 55 HFLE 58
E
Sbjct: 71 WLSE 74
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer,
thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A
{Pseudomonas aeruginosa} PDB: 2plq_A
Length = 341
Score = 38.7 bits (90), Expect = 0.005
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 187 LALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSC 246
A+ G E+ + G + + + A Y+ + G + G S
Sbjct: 178 CAMKGAELIVRCQGYMYPAKD---QQVMMAKAMAWANNCYVAVANAAGFDGVYSYFGHSA 234
Query: 247 VV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288
++ +G + + + +++ I AQ+ L + R + S
Sbjct: 235 IIGFDGRTLGECGE---EEMGIQYAQLSLSQIRDARANDQSQN 274
Score = 29.8 bits (67), Expect = 3.0
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 4 LKVATCNLNNWAL----DFDCNLKNIKESIGRAKEA--GAVIRLGPELEITGYGCEDH 55
+ VA N L + N + I E I K+ G + + PE + G +
Sbjct: 13 VGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPA 70
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A
{Xanthomonas campestris PV}
Length = 266
Score = 38.0 bits (89), Expect = 0.007
Identities = 40/316 (12%), Positives = 85/316 (26%), Gaps = 87/316 (27%)
Query: 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL--E 58
M L+++ + D N + ++ L PE +G+ E +
Sbjct: 1 MHDLRISLVQGSTRWHDPAGNRDYYGALLEPLAGQSDLVIL-PETFTSGFSNEAIDKAED 59
Query: 59 LDTVTHAWECLKDLLLGDW--TDGILCSFGMPVIKGSERYNCQVLCLN-------RKIIM 109
+D T AW + G + + + +N + K +
Sbjct: 60 MDGPTVAW-------IRTQAARLGAAITGSVQLRTEHGVFNRLLWATPDGALQYYDKRHL 112
Query: 110 IRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAV 169
R E + A ++ + + + +
Sbjct: 113 FRF---------GNEHLRYAA--------------------GRERLCVEWKGWR-----I 138
Query: 170 AAEIC-----EELFTPIPPHADLALNGVEV------FMNASGSHHQLRKLDYRIRA---- 214
++C ++ + +A + L R RA
Sbjct: 139 NPQVCYDLRFPVFCRNRFDVERPGQLDFDLQLFVANWPSARAYAWKT--L-LRARAIENL 195
Query: 215 -FISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQV 272
F++A N G DG +L++ G S V+ G + + ++V +
Sbjct: 196 CFVAA----------VNRVGVDGNQLHYAGDSAVIDFLGQPQVEIRE----QEQVVTTTI 241
Query: 273 DLDAVAGFRGSISSFQ 288
A+A R +
Sbjct: 242 SAAALAEHRARFPAML 257
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus
aureus subsp}
Length = 281
Score = 34.6 bits (80), Expect = 0.081
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 230 NHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288
N G DG Y G S V+ NGD++ + ++ +I+ ++L+ V R +I F+
Sbjct: 219 NSTGFDGNTEYA-GHSIVINPNGDLVGELNE----SADILTVDLNLNEVEQQRENIPVFK 273
Score = 30.7 bits (70), Expect = 1.6
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGA-VIRLGPELEITGYGCED 54
+KV L D N I + + A V+ L PE+ GY E
Sbjct: 21 MKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVL-PEMWNNGYDLEH 71
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 31.4 bits (72), Expect = 1.2
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 7/69 (10%)
Query: 606 VFHCGPVTMFKNL-CYRWGARLTPSEVAEKVKQFFKYYSINRHKMTVL---TPSYHAESY 661
H ++ L G + + E F I RH++ + +
Sbjct: 241 APHNFMLSSPGALGVLHAGGCVVMAPNPE-PLNCFS--IIQRHQVNMASLVPSAVIMWLE 297
Query: 662 SPDDNRFDL 670
+ +
Sbjct: 298 KAAQYKDQI 306
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 31.3 bits (71), Expect = 1.2
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 7/58 (12%)
Query: 1 MRLLKVATC-------NLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYG 51
R+++V + +K I A EAG I E +
Sbjct: 70 RRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFA 127
Score = 29.0 bits (65), Expect = 6.6
Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 20/118 (16%)
Query: 187 LALNGVEVFMN--ASGSHHQLR--KLDYRIRA-----FISATHSRGGVYMYSNHQGCDGG 237
LNG E+ N A+ ++ R A F +R G + N G
Sbjct: 246 FGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFT-VPINRVGTEQFPNEYTSGDG 304
Query: 238 R------LYFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288
F G S V +G S+ ++V ++DL+ +
Sbjct: 305 NKAHKEFGPFYGSSYVAAPDGSRTPSLSR---DKDGLLVVELDLNLCRQVKDFWGFRM 359
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.00A {Homo sapiens} PDB:
2ek6_A
Length = 95
Score = 28.8 bits (65), Expect = 1.8
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 134 KDQLEDF-----QLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEEL 177
D++ DF +P + + +K +P G + F A +L
Sbjct: 29 IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 30.3 bits (69), Expect = 2.5
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 394 GHYANGEFPTDSREFAKRIFYTVFMGSENS-SQETRMLAKKLADEIGSWHLDVSIDTVVS 452
H+++G P S + + + + S E L + ++ G+ L + D +
Sbjct: 8 HHHSSGLVPRGSHMAHSQSIFDIHSLTSPVLSAEEIHLIEASVEQFGAPLLLLDCDVIRQ 67
Query: 453 AFLSLFQTLTGKRPCYKV 470
+ +L L Y +
Sbjct: 68 QYRALKNALPNVTLHYAL 85
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics,
paracytosis, peripheral membrane protein, PSI, protein
structure initiative; 1.65A {Escherichia coli} SCOP:
a.198.1.1 PDB: 1qz4_A
Length = 213
Score = 29.5 bits (66), Expect = 3.3
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 442 HLDVSIDTVVSAFLSLFQ-TLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLL 500
H D+ +T++SA +++ ++ P +V G + L +QA++R L + + +
Sbjct: 122 HFDLQSETLMSAMAAIYVDVISPLGPRIQVTG--SPAVLQSPQVQAKVRATLLAGIRAAV 179
Query: 501 PW 502
W
Sbjct: 180 LW 181
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Length = 110
Score = 28.1 bits (63), Expect = 4.4
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 154 SVPFGYGFIQFLDTAVAAEICEEL 177
SV GY F+Q+ + A
Sbjct: 59 SVHKGYAFVQYSNERHARAAVLGE 82
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding
domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 98
Score = 27.6 bits (62), Expect = 4.5
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 134 KDQLEDF-----QLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEEL 177
D++ DF +P + + +K +P G + F A +L
Sbjct: 29 IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA
splicing factor, RNA recognition motif, RNA binding
protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Length = 172
Score = 28.7 bits (65), Expect = 4.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 158 GYGFIQFLDTAVAAEICEEL 177
GY F +++D V + L
Sbjct: 137 GYAFCEYVDINVTDQAIAGL 156
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 29.3 bits (66), Expect = 5.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 355 LSGGADSSSVAAI 367
LSGG DSS VAA
Sbjct: 248 LSGGIDSSGVAAC 260
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 27.3 bits (61), Expect = 5.9
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 151 KQKSVPFGYGFIQFLDTAVAAEICEEL-FTPIP 182
+ +P GY F++F D A A + ++ P+P
Sbjct: 46 RLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78
>2vha_A Periplasmic binding transport protein; periplasmic binding protein,
ligand binding, ultrahigh resolution; HET: GLU; 1.00A
{Shigella flexneri} PDB: 2ia4_A*
Length = 287
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 133 QKDQLEDFQLPNEISVALKQKSVPFGY--------GFIQFLDTAVAAEICEELFTP 180
L+ I V ++ SVPF Y G+ Q A+ + ++L P
Sbjct: 6 AGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKP 61
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
synthetase, AS-B, class B asparagine synthetase,
AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
c.26.2.1 d.153.1.1 PDB: 1q19_A*
Length = 503
Score = 28.9 bits (65), Expect = 6.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 355 LSGGADSSSVAAI 367
LSGG DSS V A+
Sbjct: 245 LSGGLDSSLVTAL 257
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 27.9 bits (63), Expect = 7.1
Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 37/113 (32%)
Query: 540 GSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQLDEVDMGMTYEE-LS 598
G I +DL+ LG PP EL + L E + + L+
Sbjct: 31 GFIGMEDLKDMFSS----LGRV--------PPDDELNAM------LKECPGQLNFTAFLT 72
Query: 599 VYGR----------LRKVFHC------GPVTM--FKNLCYRWGARLTPSEVAE 633
++G LR F G + K+L G + E+
Sbjct: 73 LFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKN 125
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure,
transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Length = 179
Score = 27.9 bits (62), Expect = 8.0
Identities = 12/87 (13%), Positives = 32/87 (36%)
Query: 247 VVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNL 306
V+++G +G S K+ + A++ ++ + + ++S + ++ S+ L
Sbjct: 50 VIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGL 109
Query: 307 CQPFNLKMSLSSPLKINYHSPEEEIAF 333
K L+ + F
Sbjct: 110 INRIAQKKRLTVNYEQCASGVHGPEGF 136
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 28.6 bits (65), Expect = 9.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 352 LLPLSGGADSSSVAAIV 368
LL +SGG DSS++A ++
Sbjct: 213 LLAVSGGVDSSTLALLL 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,782,977
Number of extensions: 739718
Number of successful extensions: 1913
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1837
Number of HSP's successfully gapped: 65
Length of query: 733
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 632
Effective length of database: 3,881,772
Effective search space: 2453279904
Effective search space used: 2453279904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)