Query 004728
Match_columns 733
No_of_seqs 276 out of 543
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 11:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 2E-107 3E-112 923.5 64.7 639 5-689 6-660 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 3E-80 6.4E-85 718.6 15.8 449 36-506 2-469 (619)
3 KOG4302 Microtubule-associated 99.9 4.3E-21 9.2E-26 219.6 49.6 324 69-413 16-405 (660)
4 PF03999 MAP65_ASE1: Microtubu 99.9 6E-25 1.3E-29 256.3 11.7 410 12-504 32-471 (619)
5 PF12128 DUF3584: Protein of u 96.2 2 4.3E-05 55.3 28.4 46 218-263 765-813 (1201)
6 KOG4643 Uncharacterized coiled 95.5 9.7 0.00021 47.1 34.7 51 359-409 527-578 (1195)
7 KOG0161 Myosin class II heavy 95.2 18 0.00039 48.4 36.2 148 51-202 1194-1343(1930)
8 PHA02562 46 endonuclease subun 95.0 9.4 0.0002 44.6 26.2 96 32-139 148-243 (562)
9 TIGR03185 DNA_S_dndD DNA sulfu 94.9 12 0.00026 45.1 36.2 239 99-383 206-453 (650)
10 KOG0933 Structural maintenance 94.7 16 0.00034 45.4 26.6 74 221-312 903-976 (1174)
11 KOG0161 Myosin class II heavy 94.6 24 0.00053 47.3 35.6 44 41-85 1044-1087(1930)
12 TIGR02169 SMC_prok_A chromosom 94.3 21 0.00045 45.3 32.9 35 161-195 799-833 (1164)
13 TIGR02168 SMC_prok_B chromosom 94.0 24 0.00052 44.7 31.9 10 605-614 1117-1126(1179)
14 PF13514 AAA_27: AAA domain 93.8 27 0.00059 44.8 30.4 243 16-264 581-841 (1111)
15 COG1196 Smc Chromosome segrega 93.8 28 0.00061 44.9 34.5 63 362-440 946-1010(1163)
16 TIGR00606 rad50 rad50. This fa 93.6 32 0.0007 45.0 37.0 297 54-391 434-742 (1311)
17 PF08317 Spc7: Spc7 kinetochor 93.0 17 0.00036 40.1 22.4 86 47-139 69-161 (325)
18 PRK04778 septation ring format 92.7 26 0.00057 41.5 35.7 67 16-85 63-130 (569)
19 TIGR03185 DNA_S_dndD DNA sulfu 92.4 31 0.00067 41.6 34.8 40 294-333 480-519 (650)
20 PRK11637 AmiB activator; Provi 92.3 25 0.00054 40.1 23.2 28 225-252 199-226 (428)
21 KOG4643 Uncharacterized coiled 90.7 54 0.0012 41.0 31.7 41 99-139 174-214 (1195)
22 cd09234 V_HD-PTP_like Protein- 90.7 31 0.00067 38.2 29.4 194 47-255 7-219 (337)
23 KOG4674 Uncharacterized conser 90.4 77 0.0017 42.4 40.7 134 37-197 635-775 (1822)
24 PF08317 Spc7: Spc7 kinetochor 89.8 15 0.00033 40.4 17.0 86 103-204 210-299 (325)
25 KOG0250 DNA repair protein RAD 88.8 54 0.0012 41.4 21.9 28 155-182 332-359 (1074)
26 KOG0994 Extracellular matrix g 88.6 59 0.0013 41.3 21.6 40 223-262 1590-1629(1758)
27 KOG0964 Structural maintenance 87.5 88 0.0019 39.2 30.3 74 300-386 908-981 (1200)
28 KOG0996 Structural maintenance 86.9 1E+02 0.0022 39.4 24.2 41 222-262 933-973 (1293)
29 TIGR00606 rad50 rad50. This fa 86.9 1.2E+02 0.0025 40.0 45.2 121 35-188 170-290 (1311)
30 KOG0612 Rho-associated, coiled 86.1 1.1E+02 0.0025 39.1 36.9 38 222-259 635-673 (1317)
31 COG1196 Smc Chromosome segrega 86.1 1.2E+02 0.0026 39.3 34.9 25 430-454 1067-1093(1163)
32 KOG0995 Centromere-associated 85.7 84 0.0018 37.2 31.7 42 223-264 452-493 (581)
33 PF10174 Cast: RIM-binding pro 84.8 1.1E+02 0.0024 37.8 39.0 228 12-269 23-269 (775)
34 PRK11637 AmiB activator; Provi 84.5 81 0.0017 36.0 21.7 41 99-139 44-84 (428)
35 PRK09039 hypothetical protein; 84.4 42 0.00092 37.3 16.8 104 63-196 49-152 (343)
36 cd08915 V_Alix_like Protein-in 84.4 71 0.0015 35.2 29.5 117 71-191 102-221 (342)
37 PF06705 SF-assemblin: SF-asse 84.0 61 0.0013 34.2 18.6 177 37-262 62-239 (247)
38 TIGR02168 SMC_prok_B chromosom 83.9 1.3E+02 0.0029 38.0 33.3 16 360-375 967-982 (1179)
39 KOG0977 Nuclear envelope prote 83.8 1E+02 0.0022 36.5 22.6 32 52-83 98-129 (546)
40 PF03915 AIP3: Actin interacti 83.4 34 0.00074 39.2 15.6 172 159-388 150-322 (424)
41 KOG1029 Endocytic adaptor prot 83.3 63 0.0014 39.4 17.8 69 61-136 438-506 (1118)
42 PF10498 IFT57: Intra-flagella 83.2 24 0.00053 39.5 14.2 105 50-180 217-321 (359)
43 KOG0933 Structural maintenance 83.1 1.4E+02 0.003 37.7 33.2 44 292-343 904-947 (1174)
44 PF00038 Filament: Intermediat 82.2 78 0.0017 34.2 30.9 37 100-136 52-88 (312)
45 PF00038 Filament: Intermediat 82.2 78 0.0017 34.2 26.0 233 49-332 57-306 (312)
46 PRK10869 recombination and rep 82.0 1.2E+02 0.0026 36.1 24.3 37 100-136 162-198 (553)
47 PRK09039 hypothetical protein; 81.7 93 0.002 34.7 19.0 132 98-238 112-252 (343)
48 PF10146 zf-C4H2: Zinc finger- 81.6 43 0.00092 35.4 14.5 107 48-202 3-110 (230)
49 cd09236 V_AnPalA_UmRIM20_like 81.4 96 0.0021 34.6 29.3 118 74-191 106-223 (353)
50 TIGR02680 conserved hypothetic 81.0 2E+02 0.0043 38.0 28.6 128 36-178 740-869 (1353)
51 COG4942 Membrane-bound metallo 80.0 1.2E+02 0.0026 34.8 22.0 182 35-254 35-219 (420)
52 PRK02224 chromosome segregatio 79.7 1.7E+02 0.0037 36.4 38.3 25 359-383 483-507 (880)
53 PF11995 DUF3490: Domain of un 78.4 1.2 2.6E-05 43.7 1.7 25 319-343 3-27 (161)
54 KOG2129 Uncharacterized conser 78.3 54 0.0012 37.2 14.4 45 224-274 179-223 (552)
55 PF13949 ALIX_LYPXL_bnd: ALIX 77.7 1E+02 0.0022 32.9 28.0 121 67-189 50-170 (296)
56 cd07627 BAR_Vps5p The Bin/Amph 77.2 94 0.002 32.1 15.7 37 297-333 171-214 (216)
57 PF11995 DUF3490: Domain of un 76.9 47 0.001 33.0 12.1 95 247-347 2-118 (161)
58 PF15066 CAGE1: Cancer-associa 76.0 75 0.0016 36.7 14.9 147 38-192 331-503 (527)
59 PF09726 Macoilin: Transmembra 76.0 64 0.0014 39.4 15.6 39 161-199 623-661 (697)
60 TIGR00634 recN DNA repair prot 75.5 1.8E+02 0.0039 34.5 25.3 37 100-136 166-202 (563)
61 PRK04863 mukB cell division pr 75.3 2.9E+02 0.0064 36.9 34.4 33 166-198 455-487 (1486)
62 smart00787 Spc7 Spc7 kinetocho 75.2 1.4E+02 0.003 33.0 24.1 78 62-139 72-156 (312)
63 COG1340 Uncharacterized archae 74.8 1.4E+02 0.003 32.8 24.7 122 52-181 19-152 (294)
64 cd09234 V_HD-PTP_like Protein- 74.8 1.4E+02 0.0031 33.0 29.0 112 75-191 108-219 (337)
65 PF05557 MAD: Mitotic checkpoi 74.1 14 0.00029 45.2 9.5 37 157-193 500-536 (722)
66 PF07106 TBPIP: Tat binding pr 73.9 58 0.0013 32.2 12.4 99 100-247 70-168 (169)
67 PRK04778 septation ring format 73.5 2E+02 0.0044 34.2 34.5 48 351-408 466-513 (569)
68 KOG0976 Rho/Rac1-interacting s 73.5 2.4E+02 0.0051 34.9 32.9 85 49-140 88-172 (1265)
69 PF15254 CCDC14: Coiled-coil d 73.4 67 0.0015 39.2 14.4 163 13-190 337-517 (861)
70 PF05557 MAD: Mitotic checkpoi 73.0 58 0.0013 39.8 14.6 39 219-257 498-536 (722)
71 smart00787 Spc7 Spc7 kinetocho 72.5 1.6E+02 0.0035 32.5 20.2 22 218-239 265-286 (312)
72 KOG4460 Nuclear pore complex, 71.2 2.2E+02 0.0048 33.7 21.5 126 108-252 611-737 (741)
73 KOG0976 Rho/Rac1-interacting s 70.1 2.8E+02 0.0061 34.4 30.3 39 160-198 141-179 (1265)
74 COG1340 Uncharacterized archae 70.1 1.7E+02 0.0038 32.0 15.9 29 56-84 72-100 (294)
75 KOG4674 Uncharacterized conser 70.0 4E+02 0.0087 36.1 42.3 264 18-333 544-822 (1822)
76 PF10168 Nup88: Nuclear pore c 68.1 3E+02 0.0065 33.9 25.9 117 118-253 598-714 (717)
77 TIGR03007 pepcterm_ChnLen poly 67.7 2.4E+02 0.0052 32.6 22.8 141 56-198 207-348 (498)
78 cd09237 V_ScBro1_like Protein- 67.6 2.1E+02 0.0045 31.9 34.7 32 224-255 198-229 (356)
79 PHA02562 46 endonuclease subun 67.0 2.6E+02 0.0056 32.7 26.5 31 159-189 298-328 (562)
80 PF10239 DUF2465: Protein of u 66.1 1.9E+02 0.0042 32.0 15.4 136 16-183 61-211 (318)
81 PF07888 CALCOCO1: Calcium bin 65.9 2.9E+02 0.0062 32.9 33.0 18 293-310 370-387 (546)
82 PF06160 EzrA: Septation ring 65.2 3E+02 0.0064 32.8 39.9 70 13-85 56-126 (560)
83 KOG0996 Structural maintenance 64.9 4.1E+02 0.0089 34.4 34.1 19 580-598 1232-1250(1293)
84 PF05667 DUF812: Protein of un 63.4 3.3E+02 0.0072 32.8 25.4 61 114-190 319-379 (594)
85 PF10146 zf-C4H2: Zinc finger- 62.9 1.8E+02 0.0039 30.8 13.7 37 224-260 32-68 (230)
86 PRK02224 chromosome segregatio 61.5 4.1E+02 0.0088 33.1 46.2 88 160-256 412-500 (880)
87 PF05667 DUF812: Protein of un 61.1 3.6E+02 0.0079 32.5 20.2 205 225-454 329-534 (594)
88 COG4026 Uncharacterized protei 60.6 1.6E+02 0.0035 31.0 12.4 42 98-139 131-172 (290)
89 COG4026 Uncharacterized protei 60.4 1E+02 0.0022 32.4 11.0 80 160-268 135-214 (290)
90 COG0497 RecN ATPase involved i 59.3 3.8E+02 0.0082 32.1 23.4 199 102-386 164-370 (557)
91 smart00806 AIP3 Actin interact 58.8 3.4E+02 0.0073 31.3 26.0 169 159-388 154-326 (426)
92 KOG0018 Structural maintenance 58.7 5E+02 0.011 33.3 23.0 105 26-139 649-755 (1141)
93 PF15070 GOLGA2L5: Putative go 57.8 4.2E+02 0.0091 32.1 28.5 236 64-380 1-256 (617)
94 PF12064 DUF3544: Domain of un 56.2 36 0.00077 34.1 6.7 79 520-615 7-86 (207)
95 cd09236 V_AnPalA_UmRIM20_like 56.2 3.3E+02 0.0071 30.4 35.6 200 47-255 7-223 (353)
96 KOG0977 Nuclear envelope prote 55.6 4.3E+02 0.0092 31.5 27.4 134 48-198 51-186 (546)
97 KOG0982 Centrosomal protein Nu 54.5 3.8E+02 0.0083 30.9 15.0 78 158-238 337-417 (502)
98 COG5293 Predicted ATPase [Gene 53.1 4.3E+02 0.0093 30.8 18.1 58 19-84 300-359 (591)
99 PLN03188 kinesin-12 family pro 52.5 6.7E+02 0.015 32.9 26.3 33 298-332 1046-1080(1320)
100 PF10168 Nup88: Nuclear pore c 52.4 2.1E+02 0.0045 35.3 13.8 36 155-190 680-715 (717)
101 PF01576 Myosin_tail_1: Myosin 52.3 4.7 0.0001 50.2 0.0 99 40-139 182-280 (859)
102 COG2433 Uncharacterized conser 51.1 3E+02 0.0065 33.1 14.1 92 98-195 418-509 (652)
103 cd09235 V_Alix Middle V-domain 51.0 3.8E+02 0.0083 29.7 28.2 287 13-330 24-337 (339)
104 PF04949 Transcrip_act: Transc 50.9 1.5E+02 0.0032 29.4 9.7 35 50-84 88-122 (159)
105 COG4913 Uncharacterized protei 50.4 2.4E+02 0.0053 34.6 13.2 119 50-189 765-885 (1104)
106 PF08606 Prp19: Prp19/Pso4-lik 49.7 1.1E+02 0.0025 26.4 7.9 64 12-77 3-67 (70)
107 PRK10884 SH3 domain-containing 49.1 2.9E+02 0.0063 28.7 12.4 34 161-194 140-173 (206)
108 PRK10869 recombination and rep 48.4 5.4E+02 0.012 30.6 25.0 99 120-241 215-313 (553)
109 PF14662 CCDC155: Coiled-coil 48.1 3.3E+02 0.0072 28.1 18.1 77 53-140 29-105 (193)
110 PF10211 Ax_dynein_light: Axon 47.8 3.2E+02 0.007 27.8 15.0 18 122-139 169-186 (189)
111 PF04108 APG17: Autophagy prot 46.9 4.9E+02 0.011 29.7 31.2 324 13-360 26-403 (412)
112 TIGR03007 pepcterm_ChnLen poly 46.6 5.1E+02 0.011 29.9 27.1 140 109-257 204-343 (498)
113 smart00806 AIP3 Actin interact 46.4 5.2E+02 0.011 29.8 28.6 138 100-272 153-299 (426)
114 PF04065 Not3: Not1 N-terminal 46.4 3.9E+02 0.0084 28.4 13.3 68 373-447 76-144 (233)
115 KOG0980 Actin-binding protein 46.3 7.1E+02 0.015 31.4 23.6 69 62-134 388-456 (980)
116 KOG0971 Microtubule-associated 46.2 7.3E+02 0.016 31.5 31.7 35 294-328 462-502 (1243)
117 KOG2398 Predicted proline-seri 44.6 5E+02 0.011 31.5 15.0 41 360-400 141-186 (611)
118 PF12325 TMF_TATA_bd: TATA ele 44.0 2.9E+02 0.0063 26.3 11.4 17 160-176 96-112 (120)
119 PF08614 ATG16: Autophagy prot 43.9 42 0.00091 34.1 5.4 83 99-197 71-153 (194)
120 KOG0964 Structural maintenance 42.9 8.3E+02 0.018 31.2 29.8 136 226-375 281-428 (1200)
121 PF13870 DUF4201: Domain of un 42.5 3.6E+02 0.0077 26.8 22.0 74 107-195 4-77 (177)
122 COG1579 Zn-ribbon protein, pos 42.5 4.5E+02 0.0098 28.0 18.4 39 101-139 88-126 (239)
123 cd09237 V_ScBro1_like Protein- 42.2 5.3E+02 0.011 28.7 25.8 122 69-191 96-229 (356)
124 PF13543 KSR1-SAM: SAM like do 41.9 2.6E+02 0.0057 27.0 10.0 111 156-275 9-125 (129)
125 PF04912 Dynamitin: Dynamitin 41.7 5.6E+02 0.012 28.9 23.0 55 178-238 206-260 (388)
126 PRK03918 chromosome segregatio 41.0 8E+02 0.017 30.5 39.6 31 105-135 455-485 (880)
127 PF11629 Mst1_SARAH: C termina 40.8 53 0.0012 26.4 4.2 25 361-385 22-47 (49)
128 KOG4603 TBP-1 interacting prot 40.7 4.1E+02 0.0088 27.0 17.1 38 48-85 81-118 (201)
129 PF09738 DUF2051: Double stran 40.1 5.5E+02 0.012 28.3 15.4 39 218-256 198-244 (302)
130 KOG3091 Nuclear pore complex, 40.0 5.6E+02 0.012 30.1 13.8 34 47-80 356-389 (508)
131 PF07083 DUF1351: Protein of u 39.5 4.6E+02 0.0099 27.2 18.4 93 164-266 93-186 (215)
132 PF09727 CortBP2: Cortactin-bi 39.0 4.2E+02 0.0091 27.4 11.5 98 39-136 85-182 (192)
133 KOG0250 DNA repair protein RAD 38.9 9.7E+02 0.021 30.9 30.4 72 122-197 254-325 (1074)
134 PF10212 TTKRSYEDQ: Predicted 37.8 7.4E+02 0.016 29.4 14.5 70 105-187 444-514 (518)
135 PF13514 AAA_27: AAA domain 37.3 1E+03 0.023 30.7 45.4 212 50-335 561-776 (1111)
136 KOG2150 CCR4-NOT transcription 37.2 8E+02 0.017 29.4 29.1 69 371-446 74-143 (575)
137 COG5185 HEC1 Protein involved 37.2 7.5E+02 0.016 29.0 27.5 40 295-334 534-576 (622)
138 PF02183 HALZ: Homeobox associ 36.4 1.6E+02 0.0035 23.1 6.3 42 42-84 2-43 (45)
139 PRK03918 chromosome segregatio 36.0 9.4E+02 0.02 29.9 41.7 23 355-377 449-471 (880)
140 PF07083 DUF1351: Protein of u 35.6 5.2E+02 0.011 26.8 15.6 95 104-205 91-189 (215)
141 KOG4848 Extracellular matrix-a 35.3 5.2E+02 0.011 26.7 12.3 95 329-445 65-159 (225)
142 PRK04863 mukB cell division pr 35.3 1.3E+03 0.028 31.2 41.8 67 250-334 422-488 (1486)
143 COG4717 Uncharacterized conser 35.2 1E+03 0.022 30.1 21.0 114 20-139 592-713 (984)
144 PF09726 Macoilin: Transmembra 35.1 9.5E+02 0.021 29.6 27.2 33 159-191 417-449 (697)
145 PF14643 DUF4455: Domain of un 35.0 7.8E+02 0.017 28.6 35.6 46 288-333 236-281 (473)
146 PF10481 CENP-F_N: Cenp-F N-te 34.9 4.8E+02 0.01 28.4 11.5 43 97-139 62-104 (307)
147 PF10186 Atg14: UV radiation r 34.7 5.7E+02 0.012 26.9 15.8 22 316-337 259-280 (302)
148 PF04111 APG6: Autophagy prote 34.6 4.9E+02 0.011 28.7 12.2 33 52-84 49-81 (314)
149 PF10191 COG7: Golgi complex c 34.5 1E+03 0.022 29.7 19.4 118 160-312 151-275 (766)
150 COG1579 Zn-ribbon protein, pos 34.3 6E+02 0.013 27.1 17.7 41 157-197 86-126 (239)
151 KOG3215 Uncharacterized conser 33.3 5.8E+02 0.013 26.6 11.8 61 75-136 131-191 (222)
152 PF14643 DUF4455: Domain of un 33.2 8.3E+02 0.018 28.4 31.2 50 357-408 410-460 (473)
153 PF04100 Vps53_N: Vps53-like, 32.9 7.7E+02 0.017 27.9 15.8 148 100-277 62-224 (383)
154 PF10498 IFT57: Intra-flagella 32.8 1.2E+02 0.0026 34.2 7.1 92 107-198 218-311 (359)
155 PF11932 DUF3450: Protein of u 32.6 5.6E+02 0.012 27.0 11.9 31 51-81 40-70 (251)
156 KOG0972 Huntingtin interacting 32.5 4.1E+02 0.009 29.1 10.6 35 50-84 224-258 (384)
157 TIGR01834 PHA_synth_III_E poly 32.4 4.1E+02 0.0088 29.6 10.9 91 17-131 228-318 (320)
158 PF11365 DUF3166: Protein of u 31.7 3.8E+02 0.0082 24.7 8.8 70 39-116 9-83 (96)
159 PF04849 HAP1_N: HAP1 N-termin 31.4 7.5E+02 0.016 27.4 18.3 37 221-257 266-302 (306)
160 PRK03947 prefoldin subunit alp 31.3 4.7E+02 0.01 24.9 12.1 33 47-79 14-46 (140)
161 PF06818 Fez1: Fez1; InterPro 29.7 6.6E+02 0.014 26.1 11.4 41 160-200 10-50 (202)
162 PF04111 APG6: Autophagy prote 29.6 1.7E+02 0.0037 32.2 7.6 31 106-136 61-91 (314)
163 COG2433 Uncharacterized conser 29.6 7.5E+02 0.016 29.9 12.9 80 292-389 420-505 (652)
164 KOG0982 Centrosomal protein Nu 29.6 9.4E+02 0.02 27.9 13.3 23 158-180 372-394 (502)
165 PF06818 Fez1: Fez1; InterPro 29.4 6.5E+02 0.014 26.2 11.1 90 107-199 15-105 (202)
166 PF05384 DegS: Sensor protein 28.7 5.8E+02 0.013 25.5 10.4 131 50-200 3-134 (159)
167 PF14992 TMCO5: TMCO5 family 28.7 7.2E+02 0.016 27.1 11.8 29 55-86 16-44 (280)
168 PF14992 TMCO5: TMCO5 family 27.3 8.5E+02 0.018 26.6 13.1 64 11-78 30-95 (280)
169 PF11221 Med21: Subunit 21 of 27.2 2.5E+02 0.0055 27.2 7.5 24 62-85 71-94 (144)
170 PRK03947 prefoldin subunit alp 27.2 5.5E+02 0.012 24.4 10.3 33 161-193 102-134 (140)
171 PF07106 TBPIP: Tat binding pr 26.7 6.2E+02 0.014 24.9 14.3 41 219-259 67-107 (169)
172 PF15066 CAGE1: Cancer-associa 26.6 1.1E+03 0.024 27.7 18.4 125 167-313 345-472 (527)
173 KOG0995 Centromere-associated 26.6 1.2E+03 0.026 28.1 34.5 38 163-200 356-393 (581)
174 PF10267 Tmemb_cc2: Predicted 26.4 7.7E+02 0.017 28.3 12.1 59 226-307 260-318 (395)
175 PF08172 CASP_C: CASP C termin 26.1 5.7E+02 0.012 27.3 10.5 37 159-195 85-121 (248)
176 PF15290 Syntaphilin: Golgi-lo 25.9 3.4E+02 0.0073 29.6 8.6 104 84-199 50-156 (305)
177 KOG0971 Microtubule-associated 25.7 1.5E+03 0.032 28.9 34.7 150 294-455 403-562 (1243)
178 PF01496 V_ATPase_I: V-type AT 25.7 2.1E+02 0.0045 35.3 8.2 211 39-261 11-266 (759)
179 PF10147 CR6_interact: Growth 25.6 3.5E+02 0.0075 28.5 8.5 63 419-487 122-202 (217)
180 KOG1937 Uncharacterized conser 25.3 1.1E+03 0.025 27.4 19.4 151 19-197 309-464 (521)
181 PF01576 Myosin_tail_1: Myosin 25.2 24 0.00051 44.1 0.0 89 51-139 136-224 (859)
182 PF11932 DUF3450: Protein of u 25.1 8E+02 0.017 25.8 11.5 18 250-267 147-164 (251)
183 PF10212 TTKRSYEDQ: Predicted 24.6 7.2E+02 0.016 29.4 11.6 36 49-84 416-451 (518)
184 PF10186 Atg14: UV radiation r 24.6 8.4E+02 0.018 25.6 16.0 40 100-139 68-107 (302)
185 TIGR02231 conserved hypothetic 24.6 6.7E+02 0.015 29.4 11.8 43 98-140 127-169 (525)
186 PF04201 TPD52: Tumour protein 24.6 1.9E+02 0.004 29.0 6.0 44 30-88 25-71 (162)
187 PF13949 ALIX_LYPXL_bnd: ALIX 24.5 8.6E+02 0.019 25.8 24.3 32 223-254 140-171 (296)
188 PF04912 Dynamitin: Dynamitin 24.5 1E+03 0.023 26.7 23.8 52 120-174 206-260 (388)
189 COG3883 Uncharacterized protei 24.2 9.4E+02 0.02 26.1 15.9 141 104-257 33-181 (265)
190 KOG0289 mRNA splicing factor [ 24.1 3.2E+02 0.0069 31.6 8.4 72 11-84 65-137 (506)
191 KOG0239 Kinesin (KAR3 subfamil 23.8 8.1E+02 0.017 30.1 12.4 16 430-445 421-436 (670)
192 PF10267 Tmemb_cc2: Predicted 23.8 6.9E+02 0.015 28.6 11.1 58 297-371 261-318 (395)
193 PF07798 DUF1640: Protein of u 23.7 7.4E+02 0.016 24.7 11.6 14 27-40 12-25 (177)
194 PF06248 Zw10: Centromere/kine 23.3 1.1E+03 0.023 28.2 13.3 166 55-261 9-177 (593)
195 PF09766 FimP: Fms-interacting 23.3 5.3E+02 0.011 28.9 10.1 31 359-389 85-115 (355)
196 PF12761 End3: Actin cytoskele 23.2 8.5E+02 0.018 25.2 11.7 61 62-129 134-194 (195)
197 PRK10361 DNA recombination pro 23.2 1.1E+03 0.024 27.8 12.7 25 309-333 275-299 (475)
198 PF08172 CASP_C: CASP C termin 22.8 8.6E+02 0.019 26.0 11.1 31 52-82 5-35 (248)
199 KOG1850 Myosin-like coiled-coi 22.6 1.1E+03 0.024 26.3 30.8 105 69-200 71-176 (391)
200 PF14362 DUF4407: Domain of un 22.5 9.9E+02 0.021 25.7 16.8 38 47-84 129-166 (301)
201 KOG0979 Structural maintenance 22.0 1.8E+03 0.038 28.5 23.5 42 223-264 317-358 (1072)
202 TIGR00634 recN DNA repair prot 22.0 1.4E+03 0.029 27.2 28.0 116 120-257 219-334 (563)
203 PF04799 Fzo_mitofusin: fzo-li 21.7 3.4E+02 0.0073 27.5 7.2 37 43-79 103-139 (171)
204 cd00632 Prefoldin_beta Prefold 21.6 4.6E+02 0.01 23.8 7.8 97 160-257 6-103 (105)
205 cd07595 BAR_RhoGAP_Rich-like T 21.5 9.9E+02 0.021 25.4 14.7 122 12-136 76-200 (244)
206 PRK09343 prefoldin subunit bet 21.4 6.9E+02 0.015 23.5 10.6 43 98-140 74-116 (121)
207 PRK11546 zraP zinc resistance 21.2 6.3E+02 0.014 24.9 8.8 48 61-116 62-110 (143)
208 PF02994 Transposase_22: L1 tr 20.3 1.7E+02 0.0037 33.0 5.5 36 225-260 152-187 (370)
209 PF04156 IncA: IncA protein; 20.2 8.6E+02 0.019 24.1 14.4 24 106-129 127-150 (191)
210 PF05600 DUF773: Protein of un 20.2 9.2E+02 0.02 28.5 11.7 46 97-142 126-171 (507)
211 PF14712 Snapin_Pallidin: Snap 20.2 5.3E+02 0.012 22.6 7.7 37 47-83 8-44 (92)
212 TIGR03752 conj_TIGR03752 integ 20.1 8.9E+02 0.019 28.4 11.1 56 81-139 48-103 (472)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=1.6e-107 Score=923.48 Aligned_cols=639 Identities=48% Similarity=0.672 Sum_probs=540.7
Q ss_pred CCCcchhhhhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 5 NDPLLQVETTCGSLLYELQIIWDEVGETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 5 ~~~~~~~~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
+.+.++..++|++++.+|+.|||+||+++++|+.++..|++||+++|+++|+++...+++|+++|+.+++|+++||++||
T Consensus 6 ~~~~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~ 85 (660)
T KOG4302|consen 6 SEVSLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALG 85 (660)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHH
Q 004728 85 ERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEE 164 (733)
Q Consensus 85 e~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~Lee 164 (733)
+++++..+++++.++|+++|..+.++|+.|+++|++|+++|.+++.||+.||.+|+|. ...+..+.+|..|||+++|++
T Consensus 86 ~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~-~~~~~~~~~D~~dlsl~kLee 164 (660)
T KOG4302|consen 86 EPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP-EDLPSFLIADESDLSLEKLEE 164 (660)
T ss_pred CcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccCCcccccCcccccHHHHHH
Confidence 9999887788899999999999999999999999999999999999999999999876 111223467899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004728 165 FHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEG--SMSISNDAIERLTIAIHKLREVKIQ 242 (733)
Q Consensus 165 L~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~--s~~LS~~tL~~L~~~l~~LeeeK~~ 242 (733)
|+.+|.+|++||..|+++|.+++.+|+.||.+||++|...++++||+|.+..+ +++||+++|++|...+..|+++|.+
T Consensus 165 lr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~q 244 (660)
T KOG4302|consen 165 LREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQ 244 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999899999977654 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004728 243 RMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELVLKKR 322 (733)
Q Consensus 243 R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI~k~R 322 (733)
|++++++|+.+|.+||++|++|++||..|.+++ ++++|.+++||.++|.+++.||.||++||+++||+||+++|
T Consensus 245 r~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r 318 (660)
T KOG4302|consen 245 RLQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKR 318 (660)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999875 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCc--hhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004728 323 LELEEICRNTHMVP--ENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKEILERVEKWLGACEEECWLEEY 400 (733)
Q Consensus 323 ~ELeeLWdk~~~s~--eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~IlelVekw~~l~eEe~~LEe~ 400 (733)
.||++||+.+||+. ++|..|. +.+|++|..+..++|+.++.+|.++|+++.+||+|+++|++|+++|+++.|||+|
T Consensus 319 ~Eleel~~~~h~s~~~e~~~~f~--~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~ 396 (660)
T KOG4302|consen 319 SELEELWRLLHYSEENESRRRFI--TYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEY 396 (660)
T ss_pred HHHHHHHHHHhccccHHHHHHHH--HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Confidence 99999999999999 7777776 4668999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhccCCCCccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHcCCeeEECCccHHHHHHHHHHHHHHHHHHHHHH
Q 004728 401 NRDDNRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASKTIAWEKERGVEFLYDGVRLLSMLEEYTILRQEKEQERRRQ 480 (733)
Q Consensus 401 skDpnRy~nrrGah~~LlreEK~Rk~v~KLPklee~L~~kl~~WE~e~g~pFl~dG~~lLe~Lee~~~~r~eKE~ek~r~ 480 (733)
++|.|||+++||+|++|+||||+|++++|||++++.|+.++.+||+++|++|+|||++|++|+++|..||++||++++|+
T Consensus 397 n~D~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~k~r~ 476 (660)
T KOG4302|consen 397 NRDSNRYNAGRGAHLLLKREEKARKLVSKLPKMVEALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQEKARQ 476 (660)
T ss_pred cchhhhHhccccchhHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccccCccccCCCCCCCCCCCCCCCCCccccchhhhc
Q 004728 481 RDQKKLQGQLIAEQEALYGSKPSPSKTQSVKKAPRVSTGSVSHRRLSVGGAMLQTPKPELPSSTKATPHPRTVKKIDRIL 560 (733)
Q Consensus 481 R~~KK~q~q~~~e~e~~~Gs~psp~k~~~~~k~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (733)
|++||.++|+..+++..|||+|||++|.+.||..+.+++ ++.+++.|++..+...+ .+.++
T Consensus 477 rd~kk~s~q~~~~~~~~~~sk~sp~~p~s~rk~~~~~t~--~~~~~~~~ps~~~~s~~-------~~~~s---------- 537 (660)
T KOG4302|consen 477 RDQKKTSGQLKPEQEGRYGSKPSPSKPNSPRKNRGRSTP--PNGSLSKTPSKRPLSGG-------NSAAS---------- 537 (660)
T ss_pred ccccccccccCccccccccCCCCCCCCCccccCCCCCCC--CCCCCCCCCccCcCCCC-------CCCCC----------
Confidence 999999999999999999999999999999987544322 22333322211111111 11000
Q ss_pred cccccccccCCcccccccCcCCcccCCCccccCCCCCC-CCCCCCcCCCCCCCCccc-cchhhhhhhhhhhhcccccccc
Q 004728 561 QNDHTNVRMDDGFAALSAGRRGLDIAGFPIKKHSLGAC-EPQSPMIRKPFSPISSTA-SSKSNIINLLEDLNSHGETTMQ 638 (733)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 638 (733)
...+...+| +|++...+..|..+...++. .+.|+...+++++.+.+. -++.|+.++.-..-.
T Consensus 538 --------~~~~~~~~s-~r~~~~~st~p~n~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 601 (660)
T KOG4302|consen 538 --------TQNRTTPLS-PRRLRASSTTPANKVARQKIESLNSNNSSPASSSLSTSQTHSQLNVEKSTIFLVP------- 601 (660)
T ss_pred --------cccCCCCCC-cccccCCCCCCchhhhcccccccccCCCCCccCCCCCCCCccccccccccccccc-------
Confidence 001112222 37777777777777766666 455555555566555553 445555444321100
Q ss_pred ccCCCCcccCCCCccccc-cccccC-------CCCCCC--CCCCCCCccccccccccccCC
Q 004728 639 KAVPPIESFTTPSKTNTL-VDEENR-------TPKAMP--IPVPSTPSTVSVPMQTAITPA 689 (733)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 689 (733)
........+ +..+.+. +-++-+ +|++.. .++|++|..||++|.++.||.
T Consensus 602 -~~~~~~~~s-~~~s~~~r~~~~~r~~~~~~~~~~~s~k~~~~~~~~~~ss~~~~~~p~~~ 660 (660)
T KOG4302|consen 602 -SDHETCSRS-GRSSTGTRNSEKKRLLSKSSSSPDTSGKLNSPPNEPEFSSYELSKSPTFL 660 (660)
T ss_pred -CcchhhccC-CCCCccccchhhhcccchhccCCchhhhhcCCCCCccccccccccCCCCC
Confidence 001111111 1222211 111111 233222 568999999999999999974
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=3e-80 Score=718.65 Aligned_cols=449 Identities=41% Similarity=0.593 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------Cccccc-----ccccccc
Q 004728 36 RDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGER-----------PVHIRQ-----SDQTAES 99 (733)
Q Consensus 36 Rd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~-----------p~~~~~-----~e~~~~t 99 (733)
++.|+..++++|+++|.++|++++..+++|+++|+++++|++.||++||+. |+.... ......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 81 (619)
T PF03999_consen 2 CDLMVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMP 81 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhccccc
Confidence 467889999999999999999999999999999999999999995555443 322110 0112467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCC-HHHHHHHHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLS-LRKLEEFHRELHELQKEKSN 178 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS-~e~LeeL~~~L~~Lq~EK~~ 178 (733)
|.+++..|+++|+.|++++.+|+++|.+|+.+++.||.+|+..+... ....++..+++ .++|+.|+.+|+.|++||+.
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~-~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~ 160 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCL-NPFDIDESDLPSLEELEELRQHLQRLQEEKER 160 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCC-ccccCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996443322 11235566666 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcc-ccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 179 RLKQVQDHLNTLSSLCSVLGIDFK-HTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLEL 257 (733)
Q Consensus 179 Rl~kv~~l~~~I~~L~~~Lg~d~~-~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eL 257 (733)
|+++|.+++..|+.||.+||++|. ..+......+.+++..++||+++|++|...++.|+++|.+|.+++++|+.+|..|
T Consensus 161 R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~L 240 (619)
T PF03999_consen 161 RLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEEL 240 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 4443332232355678999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCch
Q 004728 258 WNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMVPE 337 (733)
Q Consensus 258 W~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~e 337 (733)
|++|++|++||+.|.. .+++||.++|++++.||+||+++|+++|++||+++|.+|++|||+|||+++
T Consensus 241 W~~L~~~~ee~~~F~~-------------~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~e 307 (619)
T PF03999_consen 241 WNRLDVPEEEREAFLE-------------ENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEE 307 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCCHHHHHHHhh-------------ccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999954 467899999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHhcCchhhccCCCCccch
Q 004728 338 NDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKEILERVEKWLGACEEECWLEEYNRDDNRYNAGKGAHLTL 417 (733)
Q Consensus 338 eR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~IlelVekw~~l~eEe~~LEe~skDpnRy~nrrGah~~L 417 (733)
+|.+|..++. +.++++||+.||.||++|+++|.+|++||++|++|.++|+++.|||+|++|||||+|||| | |
T Consensus 308 er~~F~~~~~-----d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg-~--L 379 (619)
T PF03999_consen 308 ERQAFTPFYI-----DSYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLNNRGG-H--L 379 (619)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG---------H
T ss_pred HHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhccccc-H--H
Confidence 9999986553 347799999999999999999999999999999999999999999999999999996554 5 8
Q ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHcCCeeEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 004728 418 KRAEKARSLVN-KLPGMVEALASKTIAWEKERGVEFLYDGVRLLSMLEEYTILRQEKEQERRRQRDQKKLQGQLIAEQEA 496 (733)
Q Consensus 418 lreEK~Rk~v~-KLPklee~L~~kl~~WE~e~g~pFl~dG~~lLe~Lee~~~~r~eKE~ek~r~R~~KK~q~q~~~e~e~ 496 (733)
|+|||.|++|. +||+|+++|+.+|.+||.++|+||+|||++|+++|++|......++++|.+.|++|+.+.+..+++++
T Consensus 380 LkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~ 459 (619)
T PF03999_consen 380 LKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWERKREEKERSKQQKKLQNQKQTEQEM 459 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHhhhhhhccccccCCCCCCCccccCC
Confidence 99999999775 59999999999999999999999999999999999866666667777777788889999899999999
Q ss_pred hcCCCCCCCC
Q 004728 497 LYGSKPSPSK 506 (733)
Q Consensus 497 ~~Gs~psp~k 506 (733)
+||++|+|.+
T Consensus 460 ~~~s~~s~~~ 469 (619)
T PF03999_consen 460 PYGSKPSPAP 469 (619)
T ss_dssp HC--------
T ss_pred CCCCccccCC
Confidence 9999887654
No 3
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.92 E-value=4.3e-21 Score=219.61 Aligned_cols=324 Identities=19% Similarity=0.237 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccC
Q 004728 69 IADSEADLAAICSAMGERPVHIRQSDQTAESLKEE-LRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYIS 147 (733)
Q Consensus 69 Ia~~~~El~~L~seLge~p~~~~~~e~~~~tLkeq-L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~ 147 (733)
...+-.+++.|++++|+...... +...-|.++ +..+...+++....+..-.+++..+++++..||..|+..+.+..
T Consensus 16 ~~~~~~eL~~IW~~igE~~~e~d---~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~ 92 (660)
T KOG4302|consen 16 CGNLLNELQKIWDEIGESETERD---KKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE 92 (660)
T ss_pred HHHHHHHHHHHHHHhCccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 33344459999999998654322 222334333 55667888999999999999999999999999999966544332
Q ss_pred cccccCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHH
Q 004728 148 SKTVVDDADLS-LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAI 226 (733)
Q Consensus 148 ~~~~vde~dLS-~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL 226 (733)
.++...-| .++|..+...|+.|++.|++|..+|.++..+|..||.+||..+.. .+..+ .+..+||+..|
T Consensus 93 ---~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~----~~~~~---~D~~dlsl~kL 162 (660)
T KOG4302|consen 93 ---ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDL----PSFLI---ADESDLSLEKL 162 (660)
T ss_pred ---cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC----Ccccc---cCcccccHHHH
Confidence 23333335 589999999999999999999999999999999999999987211 11111 23578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccC--CCCCCcHHHHHHHHHHHH
Q 004728 227 ERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEIT--EPNTLSVDFISYVETEVS 304 (733)
Q Consensus 227 ~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t--~~~~LS~~~Ie~le~EV~ 304 (733)
+.|+..+..|+++|..|++++.++...|..||..||++ |..+...++++...-. .+.++|.++|+.+..-|+
T Consensus 163 eelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~ 236 (660)
T KOG4302|consen 163 EELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVK 236 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 5444455555543333 368899999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHH------------HHh----------------------
Q 004728 305 RLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIE------------AIE---------------------- 350 (733)
Q Consensus 305 RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~------------~i~---------------------- 350 (733)
.|.+.|.+++.++ ..++..+.+||++|.+|+++|..|.++.. .|.
T Consensus 237 ~l~~~k~qr~~kl-~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~ 315 (660)
T KOG4302|consen 237 KLKEEKKQRLQKL-QDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIE 315 (660)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999985 99999999999999999999999954111 000
Q ss_pred ---------------cC-------------CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHhc
Q 004728 351 ---------------SG-------------AMDTANVLEQIELQIAKVKEEAFSRKEILERVEKWLGACEEECWLEEYNR 402 (733)
Q Consensus 351 ---------------sg-------------~~~~eeLLe~~E~EI~rLKe~~~srk~IlelVekw~~l~eEe~~LEe~sk 402 (733)
++ +.+++++++.|+. |..+...+...+.+++.|-+|..-|......|.+.-
T Consensus 316 k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~-~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~le 394 (660)
T KOG4302|consen 316 KKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLEN-IDNLIKKYKEEALSRKEILERVEKWESACEEESWLE 394 (660)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 11 1367778888888 888888888889999999999999999999999999
Q ss_pred CchhhccCCCC
Q 004728 403 DDNRYNAGKGA 413 (733)
Q Consensus 403 DpnRy~nrrGa 413 (733)
|+||-.||=.+
T Consensus 395 e~n~D~nR~~~ 405 (660)
T KOG4302|consen 395 EYNRDSNRYNA 405 (660)
T ss_pred cccchhhhHhc
Confidence 99999986665
No 4
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.91 E-value=6e-25 Score=256.35 Aligned_cols=410 Identities=20% Similarity=0.289 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHhHhCCChHHHHHHHH-------------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 12 ETTCGSLLYELQIIWDEVGETDTDRDKMLL-------------ELEQ-----ECLEVYRRKVDQANRCRAQLRQAIADSE 73 (733)
Q Consensus 12 ~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~-------------~leq-----e~l~vy~~kVdee~~~r~~L~qsIa~~~ 73 (733)
...+..+-.++..|+.++|+..+.-...|. +... +++..++..+++..+.+...++.|.++.
T Consensus 32 ~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~ 111 (619)
T PF03999_consen 32 LQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQ 111 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778899998888876554322222 2111 2444467788888888889999999999
Q ss_pred HHHHHHHHHhCCCCcccc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---ccCc
Q 004728 74 ADLAAICSAMGERPVHIR--QSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTV---YISS 148 (733)
Q Consensus 74 ~El~~L~seLge~p~~~~--~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~---~~~~ 148 (733)
.++..||..||..+.... ..+....+-.++|..++.+|+.|++++..|+.+|..+..+|..||.+|+..+. +...
T Consensus 112 ~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~ 191 (619)
T PF03999_consen 112 EQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKD 191 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhh
Confidence 999999999997765432 12232334347789999999999999999999999999999999999976553 2111
Q ss_pred ccc----cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHH
Q 004728 149 KTV----VDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISND 224 (733)
Q Consensus 149 ~~~----vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~ 224 (733)
... .+..+||.+.|+.|+..++.|+.+|..|..++..+...|..||..|+++.++....+ ..+.++|.+
T Consensus 192 l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~-------~~~~~ls~~ 264 (619)
T PF03999_consen 192 LLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFL-------EENSGLSLD 264 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-------hccCcchHH
Confidence 111 235789999999999999999999999999999999999999999999877664322 135789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHH
Q 004728 225 AIERLTIAIHKLREVKIQRMQKL-QDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEV 303 (733)
Q Consensus 225 tL~~L~~~l~~LeeeK~~R~~kl-~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV 303 (733)
+|+.|+.++++|+++|.++++.+ ...+.+|.+||+.|.+++++|..|..++.+ +++.++++.++.||
T Consensus 265 ~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d------------~~~E~lL~~hE~Ei 332 (619)
T PF03999_consen 265 TIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYID------------SYTEELLELHEEEI 332 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc------------cchHHHHHHHHHHH
Confidence 99999999999999999999998 679999999999999999999999887653 35689999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCC--CCcHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004728 304 SRLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGA--MDTANVLEQIELQIAKVKEEAFSRKEIL 381 (733)
Q Consensus 304 ~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~--~~~eeLLe~~E~EI~rLKe~~~srk~Il 381 (733)
.||++....+=. |+++-.++.++|+.+. .|..... |.+- .-...||..-+..-.-.+.+...-+.|.
T Consensus 333 ~~Lk~~~~~~k~--Il~~v~k~~~l~~~~~-------~Le~~~~--D~~Rl~~RGg~LLkEEk~rk~i~k~lPkle~~L~ 401 (619)
T PF03999_consen 333 ERLKEEYESRKP--ILELVEKWESLWEEME-------ELEESSK--DPSRLNNRGGHLLKEEKERKRIQKKLPKLEEELK 401 (619)
T ss_dssp --HHHHHHHHHH--HHHHHHHHHHHHHHHH-------HHHHHHH---CCGG------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHH-------HHHHHhc--ChhhhcccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999998543 6788899999998664 2221110 0000 0113366666666666778888889999
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCchhhccCCCCccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHcCCeeEECCccHHH
Q 004728 382 ERVEKWLGACEEECWLEEYNRDDNRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASKTIAWEKERGVEFLYDGVRLLS 461 (733)
Q Consensus 382 elVekw~~l~eEe~~LEe~skDpnRy~nrrGah~~LlreEK~Rk~v~KLPklee~L~~kl~~WE~e~g~pFl~dG~~lLe 461 (733)
.+|..|+. -...| |.- -|.. +.+-| . +
T Consensus 402 ~~l~~wE~----------e~g~p--Flv-~G~~------------------~le~l----~------------------e 428 (619)
T PF03999_consen 402 KKLEEWEE----------EHGKP--FLV-DGER------------------YLEYL----E------------------E 428 (619)
T ss_dssp HHHHHHHH----------HHTS----EE-TTEE------------------HHHHH----H-------------------
T ss_pred HHHHHHHH----------HcCCe--EEE-cCcc------------------HHHHH----H------------------H
Confidence 99999942 11222 442 3331 11111 1 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCCCC
Q 004728 462 MLEEYTILRQEKEQERRRQRDQKKLQGQLIAEQEALYGSKPSP 504 (733)
Q Consensus 462 ~Lee~~~~r~eKE~ek~r~R~~KK~q~q~~~e~e~~~Gs~psp 504 (733)
+.++|..++++|+..+...+.+.+.+.+...---..-.+.|+|
T Consensus 429 ~~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~~~~s~~s~~~~~ 471 (619)
T PF03999_consen 429 YEEQWERKREEKERSKQQKKLQNQKQTEQEMPYGSKPSPAPST 471 (619)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHhhhhhhccccccCCCCCCCccccCCCCCCccccCCCC
Confidence 5688999999999888765555555544444433333344433
No 5
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.20 E-value=2 Score=55.33 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCC
Q 004728 218 SMSISNDAIERLTIAIHKLREVKI---QRMQKLQDLATTMLELWNLMDT 263 (733)
Q Consensus 218 s~~LS~~tL~~L~~~l~~LeeeK~---~R~~kl~eL~~~I~eLW~~L~i 263 (733)
..++....|..|+..+..|+..-. ++...+.+|..-+..+|..++-
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~ 813 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDE 813 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 456777888888888888765433 4556678899999999998653
No 6
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.46 E-value=9.7 Score=47.12 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhHHHHHHHHHhcCchhhcc
Q 004728 359 VLEQIELQIAKVKEEAF-SRKEILERVEKWLGACEEECWLEEYNRDDNRYNA 409 (733)
Q Consensus 359 LLe~~E~EI~rLKe~~~-srk~IlelVekw~~l~eEe~~LEe~skDpnRy~n 409 (733)
++..+=.++..++..++ .+..++..|...+.-|..-..||..++|-.+|++
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~ 578 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHN 578 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Confidence 33444444555554444 4588999999988888888889999999888864
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.15 E-value=18 Score=48.44 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 51 YRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLE 130 (733)
Q Consensus 51 y~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (733)
+...+++....+..+...-.+++.++.+++.+++-........+.....+..+|..++..+.++.....+-..+...+..
T Consensus 1194 l~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~ 1273 (1930)
T KOG0161|consen 1194 LQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQN 1273 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34466666777777777778888888888888874332211112222334445555555555554443332222333333
Q ss_pred HHHHHHHHhcCCCCccCcccccCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 004728 131 QIEMIKSEILGSTVYISSKTVVDDADLS--LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFK 202 (733)
Q Consensus 131 qI~~Lc~eL~g~~~~~~~~~~vde~dLS--~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~ 202 (733)
+...+...+.. ..... ... ..+.+ ..+|+.++.+++.-...+......+..+...+..|-+.+..+.+
T Consensus 1274 E~~~l~~~lee-~e~~~--~~~-~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e 1343 (1930)
T KOG0161|consen 1274 ENEELSRQLEE-AEAKL--SAL-SRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQE 1343 (1930)
T ss_pred hHHHHhhHhHH-HHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333322211 00000 000 01111 25677777777777777777777888888777777777765543
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.00 E-value=9.4 Score=44.64 Aligned_cols=96 Identities=13% Similarity=0.161 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHH
Q 004728 32 TDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQV 111 (733)
Q Consensus 32 ~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~L 111 (733)
...+|..++..+.. +++|..+-...+.....+.+.++.+.+++..+-..+..-... ...+..+ ....+
T Consensus 148 ~~~er~~il~~l~~--~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~-------i~~~~~~---~~~~i 215 (562)
T PHA02562 148 SAPARRKLVEDLLD--ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKN-------IEEQRKK---NGENI 215 (562)
T ss_pred ChHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHH---HHHHH
Confidence 34566677666653 456766555555555566667777777777766665421100 1112221 22345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 112 EEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 112 EeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
+.++++.++-..+...+..++..+-.+|
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666777777776666
No 9
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.90 E-value=12 Score=45.08 Aligned_cols=239 Identities=13% Similarity=0.196 Sum_probs=123.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccCcccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004728 99 SLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGST-VYISSKTVVDDADLSLRKLEEFHRELHELQKEKS 177 (733)
Q Consensus 99 tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~-~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~ 177 (733)
.+..++..+...+..+..+..+-.+++..++.++..+-..+..-. .+. ....-..++.+.+..++..++.++.
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~------~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR------SEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655555555555555555555442110 000 0111233556677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004728 178 NRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQD-LATTMLE 256 (733)
Q Consensus 178 ~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~e-L~~~I~e 256 (733)
++.+.+..+.+. ..++.|....|..+...+...+.-+ +.+.+.+ +......
T Consensus 280 e~~~~l~~l~~~--------------------------~~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~~~~ 331 (650)
T TIGR03185 280 ANRAQLRELAAD--------------------------PLPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEERDKE 331 (650)
T ss_pred HHHHHHHHHhcc--------------------------cCCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 776666554432 1245667778888888887765433 3333444 4466777
Q ss_pred HHHhc---CCCHHHHHHhHhhhhc-ccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHH
Q 004728 257 LWNLM---DTPVEEQQAFQSVTCN-IAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKEL---VLKKRLELEEIC 329 (733)
Q Consensus 257 LW~~L---~ip~eEr~~F~~~~~~-i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKel---I~k~R~ELeeLW 329 (733)
||..+ ..+.+..+........ ..+...+..-+-+++...+..+..-++.+..-....+..+ +.++..+|.++=
T Consensus 332 i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~ 411 (650)
T TIGR03185 332 LLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVD 411 (650)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 5555544333332211 1111112222345666666666665555552212223333 346667777777
Q ss_pred HhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004728 330 RNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKEILER 383 (733)
Q Consensus 330 dk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~Ilel 383 (733)
+++.-.++.. .+.. -.+-++.++.++..++..+.....-++.
T Consensus 412 ~~l~~~~~~e-~i~~-----------l~e~l~~l~~~l~~~~~~~~~~~~~~~~ 453 (650)
T TIGR03185 412 KKISTIPSEE-QIAQ-----------LLEELGEAQNELFRSEAEIEELLRQLET 453 (650)
T ss_pred HHHhcCCChH-HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665433321 1111 1233555566666665555554444433
No 10
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=16 Score=45.45 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHH
Q 004728 221 ISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVE 300 (733)
Q Consensus 221 LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le 300 (733)
.....+..|...+.+++.+++...+++..+..+..-| .+|...|...... -++...+...+.
T Consensus 903 ~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi-------~~ek~~fgk~gt~-----------yDf~~~~p~~ar 964 (1174)
T KOG0933|consen 903 DGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWI-------GDEKRLFGKKGTD-----------YDFESYDPHEAR 964 (1174)
T ss_pred cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccch-------hHHHHhhcCCCCc-----------cccccCCHhHHH
Confidence 3455678899999999999888888887777665322 2677788763221 123344455666
Q ss_pred HHHHHHHHHHHH
Q 004728 301 TEVSRLEELKTS 312 (733)
Q Consensus 301 ~EV~RLeeLK~~ 312 (733)
.++.+|++.+..
T Consensus 965 e~l~~Lq~k~~~ 976 (1174)
T KOG0933|consen 965 EELKKLQEKKEK 976 (1174)
T ss_pred HHHHHhhHHHHH
Confidence 666666655443
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.59 E-value=24 Score=47.25 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 41 LELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGE 85 (733)
Q Consensus 41 ~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge 85 (733)
..++.++ ...+.-+++.+..++.+-..++..+.|+..|-..++.
T Consensus 1044 rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1044 RKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred HHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455555 4555666666677777777777777777777777664
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.31 E-value=21 Score=45.31 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 161 KLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCS 195 (733)
Q Consensus 161 ~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~ 195 (733)
.+..++..+..++.+...-...+..+...+..+-.
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 833 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544455544444444333
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.96 E-value=24 Score=44.67 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=4.7
Q ss_pred cCCCCCCCCc
Q 004728 605 IRKPFSPISS 614 (733)
Q Consensus 605 ~~~~~~~~~~ 614 (733)
+--|++-+++
T Consensus 1117 lDE~~~~ld~ 1126 (1179)
T TIGR02168 1117 LDEVDAPLDD 1126 (1179)
T ss_pred ecCccccccH
Confidence 3445555543
No 14
>PF13514 AAA_27: AAA domain
Probab=93.81 E-value=27 Score=44.80 Aligned_cols=243 Identities=19% Similarity=0.218 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhHhCCChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccc-
Q 004728 16 GSLLYELQIIWDEVGETDTDRDKMLLEL--EQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQ- 92 (733)
Q Consensus 16 ~~~l~eLq~IWdEIG~~e~eRd~~l~~l--eqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~- 92 (733)
..+-.....+|.-.|.|..- ..|..=+ -+.++.... -+.......+.+....+.+...|......+|.. .....
T Consensus 581 ~~~~~~W~~~~~~~g~p~~p-~~~~~Wl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~l~~~ 657 (1111)
T PF13514_consen 581 AALEAAWAALWAAAGLPLSP-AEMRDWLARREAALEAAE-ELRAARAELEALRARRAAARAALAAALAALGPA-EELAAL 657 (1111)
T ss_pred HHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccHHHH
Confidence 33445566778888977544 3332211 112222222 222233344556666667777776666666651 00000
Q ss_pred ccc-------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCC-C
Q 004728 93 SDQ-------------TAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADL-S 158 (733)
Q Consensus 93 ~e~-------------~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dL-S 158 (733)
... ....+..++..+...++.+..+...-...+.....+....+.+++..+...+. .+.. .+ .
T Consensus 658 l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~--~~~~-~l~~ 734 (1111)
T PF13514_consen 658 LEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPE--EALE-ALEL 734 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHH--HHHH-HHHH
Confidence 000 00112222222223333333333333333444444444444444332221110 0001 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc-ccccccccCcCCCCCCHHHHHHHHHHHHHHH
Q 004728 159 LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVS-DIHPSFCENEGSMSISNDAIERLTIAIHKLR 237 (733)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~-ev~psl~e~~~s~~LS~~tL~~L~~~l~~Le 237 (733)
.+.+......+..++.....-...+..+...+..|+..++.+...... .....+...-....-....+..+...+..++
T Consensus 735 l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~ 814 (1111)
T PF13514_consen 735 LEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELE 814 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444445666666666666677888888888899888875432210 0000000000000001223344444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004728 238 EVKIQRMQKLQDLATTMLELWNLMDTP 264 (733)
Q Consensus 238 eeK~~R~~kl~eL~~~I~eLW~~L~ip 264 (733)
....+-...+..+...+..|+...++.
T Consensus 815 ~~~~~~~~~l~~~~~~l~~L~~~a~~~ 841 (1111)
T PF13514_consen 815 EELEQAEEELEELEAELAELLEQAGVE 841 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 555555555555666666666655543
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.77 E-value=28 Score=44.88 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhHHHHHHHHHhcCchhhccCCCCccchHHHHHHHHHh-hhhhHHHHHHHH
Q 004728 362 QIELQIAKVKEEAFSRKEI-LERVEKWLGACEEECWLEEYNRDDNRYNAGKGAHLTLKRAEKARSLV-NKLPGMVEALAS 439 (733)
Q Consensus 362 ~~E~EI~rLKe~~~srk~I-lelVekw~~l~eEe~~LEe~skDpnRy~nrrGah~~LlreEK~Rk~v-~KLPklee~L~~ 439 (733)
..+.+|.+++.......+| +..++.|...-++...|... +-.-+++++.+ ..+-.+.+..+.
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~----------------~~dl~~a~~~l~~~i~~~d~~~~~ 1009 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQ----------------REDLEEAKEKLLEVIEELDKEKRE 1009 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666664433332 33444444333333333221 33445555544 336666665544
Q ss_pred H
Q 004728 440 K 440 (733)
Q Consensus 440 k 440 (733)
.
T Consensus 1010 ~ 1010 (1163)
T COG1196 1010 R 1010 (1163)
T ss_pred H
Confidence 3
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.60 E-value=32 Score=44.97 Aligned_cols=297 Identities=11% Similarity=0.144 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 004728 54 KVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKR--KSDRKKQFVDVLEQ 131 (733)
Q Consensus 54 kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~--K~eR~~ef~~l~~q 131 (733)
.+.............++....++..+..+|+.-.... .....+..++..+...|+.+... -.....++.....+
T Consensus 434 ~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 509 (1311)
T TIGR00606 434 EKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSS----DRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNE 509 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCh----HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3333333444455566666666777777777432211 11334555555555555544432 11222333333333
Q ss_pred HHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCcccccccccc
Q 004728 132 IEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLC-SVLGIDFKHTVSDIHP 210 (733)
Q Consensus 132 I~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~-~~Lg~d~~~~i~ev~p 210 (733)
+..|-.++.. ++...-........+..+.-+++++..+...+..+......-. ..+| ++ .. . +
T Consensus 510 ~~~le~~~~~----------l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~-~~-~---~ 573 (1311)
T TIGR00606 510 KADLDRKLRK----------LDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YF-PN-K---K 573 (1311)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CC-c---H
Confidence 3333333311 0011112345556777788888888888888887777654333 3445 44 11 0 1
Q ss_pred ccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCC
Q 004728 211 SFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNT 290 (733)
Q Consensus 211 sl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~ 290 (733)
.+ ...+..+...+..+++......+.+..+-.++..+=..+.--..+.+.+...+... .+...
T Consensus 574 ~l----------~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~-------~~~~~ 636 (1311)
T TIGR00606 574 QL----------EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV-------CGSQD 636 (1311)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCchh
Confidence 11 33444444444444444444444444433333333333333333322222221100 01111
Q ss_pred CcHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHH---HHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHH
Q 004728 291 LSVDFISYVETEVSRLEELKT------SKMKELVLKKRLE---LEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLE 361 (733)
Q Consensus 291 LS~~~Ie~le~EV~RLeeLK~------~~mKelI~k~R~E---LeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe 361 (733)
|. +.|..++.++.....-.. ..+..+|.....+ -+-||.+-+-+.++...|.. -+........+.++
T Consensus 637 ~~-~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~---~L~~~~~~~p~~~~ 712 (1311)
T TIGR00606 637 EE-SDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFIS---DLQSKLRLAPDKLK 712 (1311)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHH---HHHHHHhcchhhHH
Confidence 11 255555555554441111 1122222222111 22344444444444445542 22221112234567
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 004728 362 QIELQIAKVKEEAFSRKEILERVEKWLGAC 391 (733)
Q Consensus 362 ~~E~EI~rLKe~~~srk~IlelVekw~~l~ 391 (733)
..+..+..+++.+..-..+-..++.|..+.
T Consensus 713 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~ 742 (1311)
T TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLK 742 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 777778888888887777777777776665
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.03 E-value=17 Score=40.07 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Cccc--c--ccccccccHHHHHHHHHHHHHH--HHHHHH
Q 004728 47 CLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGER-PVHI--R--QSDQTAESLKEELRRILPQVEE--MRKRKS 119 (733)
Q Consensus 47 ~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~-p~~~--~--~~e~~~~tLkeqL~~i~~~LEe--Lrk~K~ 119 (733)
++++|.-.+.+..+ .|.+.+.-+..+-.+.... |... + -++.....+..|+..++.+-.. -..-++
T Consensus 69 ~Lely~~~c~EL~~-------~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYe 141 (325)
T PF08317_consen 69 MLELYQFSCRELKK-------YISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYE 141 (325)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444 4444444444444443322 2111 0 0122234577777777755443 333477
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004728 120 DRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 120 eR~~ef~~l~~qI~~Lc~eL 139 (733)
=|++-+..+...+..-...|
T Consensus 142 WR~~ll~gl~~~L~~~~~~L 161 (325)
T PF08317_consen 142 WRMQLLEGLKEGLEENLELL 161 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877766
No 18
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.72 E-value=26 Score=41.54 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 16 GSLLYELQIIWDEVG-ETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGE 85 (733)
Q Consensus 16 ~~~l~eLq~IWdEIG-~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge 85 (733)
...+.+++.=|++|- ..=.+-+..+..++..+ -+-.+-.++..-..+.+.|...+.++..|..+|..
T Consensus 63 ~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~---~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~ 130 (569)
T PRK04778 63 EEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELN---DKFRFRKAKHEINEIESLLDLIEEDIEQILEELQE 130 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888898853 33334455666666522 22344455555566677777777777777776663
No 19
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.44 E-value=31 Score=41.62 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 004728 294 DFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTH 333 (733)
Q Consensus 294 ~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~ 333 (733)
..++.++.-...|+.++.......+..+..++.+++..+.
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~ 519 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLM 519 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555556666666666666666666666666666553
No 20
>PRK11637 AmiB activator; Provisional
Probab=92.26 E-value=25 Score=40.13 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 225 AIERLTIAIHKLREVKIQRMQKLQDLAT 252 (733)
Q Consensus 225 tL~~L~~~l~~LeeeK~~R~~kl~eL~~ 252 (733)
.+..+......|+..+.++...+..|..
T Consensus 199 ~~~e~~~~k~~L~~~k~e~~~~l~~L~~ 226 (428)
T PRK11637 199 LLYEQQAQQQKLEQARNERKKTLTGLES 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555444444444
No 21
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.66 E-value=54 Score=41.00 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 99 SLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 99 tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
-|..+++.+...+-.|+.+-++....+.++..+|+.+-.++
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~ 214 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEI 214 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666655554444444555444444433
No 22
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=90.65 E-value=31 Score=38.17 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc---ccccHHHHHHHHHHH----------HHH
Q 004728 47 CLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQ---TAESLKEELRRILPQ----------VEE 113 (733)
Q Consensus 47 ~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~---~~~tLkeqL~~i~~~----------LEe 113 (733)
...+|....++.-+ . ....+..+-.++....+.|++|.......+. -..+|.+.-..++.+ +.+
T Consensus 7 a~S~Y~E~ka~lvr--~-~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~~~~ 83 (337)
T cd09234 7 ASSLYSEEKAKLLR--E-VVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEAMGE 83 (337)
T ss_pred HHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 56788887777643 2 3677888899999999999998753211111 112233333333321 222
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 004728 114 MR---KRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRL---KQVQDHL 187 (733)
Q Consensus 114 Lr---k~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl---~kv~~l~ 187 (733)
|. ..-.+-+.+...+......=|..+- ..|+. ...|..-...|+..+..++.-...=. ..+....
T Consensus 84 L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R--~k~G~-------~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~ 154 (337)
T cd09234 84 LSDVYQDVEAMLNEIESLLEEEELQEKEFQ--EAVGK-------RGSSIAHVTELKRELKKYKEAHEKASQSNTELHKAM 154 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHcCC-------CCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 22 2222222222222222222222221 01211 11222223334444443333221111 2333333
Q ss_pred HHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 188 NTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTML 255 (733)
Q Consensus 188 ~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~ 255 (733)
.........|+.+..... ...|+.... . .+-....+..|+..+.+|+.++.+|...+.+|+.+++
T Consensus 155 ~~~~~~l~lL~~~~~~l~-~~iPs~~~~-~-~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 155 NLHIANLKLLAGPLDELQ-KKLPSPSLL-D-RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHcCcHHHHH-hhCCCcccc-C-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344445544432221 122332111 0 1124567999999999999999999999998877653
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.44 E-value=77 Score=42.38 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHH
Q 004728 37 DKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRK 116 (733)
Q Consensus 37 d~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk 116 (733)
+..+.+++.++ +.|. .+....-..+...+..++.++..|.+.|+--... ..--++++..+...|+.++.
T Consensus 635 e~~l~qLe~~l-e~~~---~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~-------~~fA~ekle~L~~~ie~~K~ 703 (1822)
T KOG4674|consen 635 EKRLRQLENEL-ESYK---KEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNE-------LNLAKEKLENLEKNLELTKE 703 (1822)
T ss_pred HHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 66677777643 3333 2333323345667788888888887777732111 11223445555555555555
Q ss_pred HHHH---HHH----HHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 117 RKSD---RKK----QFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNT 189 (733)
Q Consensus 117 ~K~e---R~~----ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~ 189 (733)
+... |.+ .+..-...+..+..+|.+ +...+..+...+..|+.|+.-+......+...
T Consensus 704 e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~----------------a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e 767 (1822)
T KOG4674|consen 704 EVETLEERNKNLQSTISKQEQTVHTLSQELLS----------------ANEKLEKLEAELSNLKQEKLLLKETEERLSQE 767 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553 322 233333333344445522 34788999999999999999999999999999
Q ss_pred HHHHHHHh
Q 004728 190 LSSLCSVL 197 (733)
Q Consensus 190 I~~L~~~L 197 (733)
...|+.+.
T Consensus 768 ~~~l~~e~ 775 (1822)
T KOG4674|consen 768 LEKLSAEQ 775 (1822)
T ss_pred HHHHHHHH
Confidence 98888764
No 24
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.77 E-value=15 Score=40.42 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHH---
Q 004728 103 ELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNR--- 179 (733)
Q Consensus 103 qL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~R--- 179 (733)
+|..++..|..+...-+.+.+++.+++.++..+-..+.. ...+..++...|.++++....+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~----------------~~~~k~~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE----------------LEEQKQELLAEIAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444444444444444444455555555555544421 1145556677777777666543
Q ss_pred -HHHHHHHHHHHHHHHHHhCCCcccc
Q 004728 180 -LKQVQDHLNTLSSLCSVLGIDFKHT 204 (733)
Q Consensus 180 -l~kv~~l~~~I~~L~~~Lg~d~~~~ 204 (733)
..++..++..+..|....|..+...
T Consensus 274 t~~Ev~~Lk~~~~~Le~~~gw~~~~~ 299 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKLTGWKIVSI 299 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHCcEEEEE
Confidence 3578889999999999999877554
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.79 E-value=54 Score=41.38 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 155 ADLSLRKLEEFHRELHELQKEKSNRLKQ 182 (733)
Q Consensus 155 ~dLS~e~LeeL~~~L~~Lq~EK~~Rl~k 182 (733)
.+...++++.++..+..+..++.+=..+
T Consensus 332 ~~~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 332 VDAQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666555555544443333
No 26
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.63 E-value=59 Score=41.32 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004728 223 NDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMD 262 (733)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ 262 (733)
+..|.-.+..+.+.+++-..-...+.....++.+||.+|.
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666777778888888888765
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.46 E-value=88 Score=39.20 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhH
Q 004728 300 ETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKE 379 (733)
Q Consensus 300 e~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~ 379 (733)
..|++++-..+.. ..++|.|+.+--+.++..+++ +|..+. +..+.+|+..+..=...|+.+-..+|-
T Consensus 908 dKe~Ek~~~rk~~-----Ll~KreE~~ekIr~lG~Lp~d--af~ky~------~~~~~el~kkL~~~neelk~ys~VNKk 974 (1200)
T KOG0964|consen 908 DKELEKLVRRKHM-----LLKKREECCEKIRELGVLPED--AFEKYQ------DKKSKELMKKLHRCNEELKGYSNVNKK 974 (1200)
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCchH--HHHHhc------cCCHHHHHHHHHHHHHHHhhcchhhHH
Confidence 3566666555543 334777776666666777654 676533 356788888888888888888888887
Q ss_pred HHHHHHH
Q 004728 380 ILERVEK 386 (733)
Q Consensus 380 IlelVek 386 (733)
-|+-+..
T Consensus 975 AldQf~n 981 (1200)
T KOG0964|consen 975 ALDQFVN 981 (1200)
T ss_pred HHHHHHH
Confidence 6655433
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.92 E-value=1e+02 Score=39.38 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004728 222 SNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMD 262 (733)
Q Consensus 222 S~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ 262 (733)
++.++.+++..+..|+.+...-..++..|...+..+=.++.
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~ 973 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAA 973 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45566666666666666666666666665555555544433
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.90 E-value=1.2e+02 Score=39.97 Aligned_cols=121 Identities=13% Similarity=0.166 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHH
Q 004728 35 DRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEM 114 (733)
Q Consensus 35 eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeL 114 (733)
+|..++.++.. .+.|....+.....+....+.|..+..++..+-. .+++...++..+..+
T Consensus 170 ~rk~~~d~if~--~~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~------------------~~~~~~~ir~~l~~~ 229 (1311)
T TIGR00606 170 ALKQKFDEIFS--ATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQ------------------YKEKACEIRDQITSK 229 (1311)
T ss_pred HHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHH
Confidence 45555555553 3568888888888888888888888888876643 344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 115 RKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLN 188 (733)
Q Consensus 115 rk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~ 188 (733)
+.+.+.-..+...+..++..+...+..- + -....+..+...+..++..+..+...+..+..
T Consensus 230 q~kie~~~~~~~~le~ei~~l~~~~~~l--~-----------~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~ 290 (1311)
T TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEI--E-----------HNLSKIMKLDNEIKALKSRKKQMEKDNSELEL 290 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444444444444444433110 0 01234455666666665555555444444443
No 30
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.11 E-value=1.1e+02 Score=39.13 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004728 222 SNDAIERLTIAIHKLREVKIQRMQKLQDLAT-TMLELWN 259 (733)
Q Consensus 222 S~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~-~I~eLW~ 259 (733)
+.+++..+...+..+++++..+.+.+.+... .+...|+
T Consensus 635 L~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e 673 (1317)
T KOG0612|consen 635 LEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLE 673 (1317)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888877655 4444444
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=86.10 E-value=1.2e+02 Score=39.34 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=12.8
Q ss_pred hhHHHHHHHHH--HHHHHHHcCCeeEE
Q 004728 430 LPGMVEALASK--TIAWEKERGVEFLY 454 (733)
Q Consensus 430 LPklee~L~~k--l~~WE~e~g~pFl~ 454 (733)
|-+=++.|.+. |-+--.-+-.||.|
T Consensus 1067 LSGGEKsLtAlAllFAi~~~~PaPf~v 1093 (1163)
T COG1196 1067 LSGGEKSLTALALLFAIQKYRPAPFYV 1093 (1163)
T ss_pred cCCcHHHHHHHHHHHHHHhhCCCCeee
Confidence 34444454433 33444555677776
No 32
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.65 E-value=84 Score=37.16 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004728 223 NDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTP 264 (733)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip 264 (733)
.++|+.+...+..++.+-.....+++..+..-.++|..++..
T Consensus 452 ~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E 493 (581)
T KOG0995|consen 452 ASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKE 493 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666777777777888888876653
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=84.76 E-value=1.1e+02 Score=37.84 Aligned_cols=228 Identities=15% Similarity=0.247 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhCC
Q 004728 12 ETTCGSLLYELQIIWDEVGETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADL------AAICSAMGE 85 (733)
Q Consensus 12 ~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El------~~L~seLge 85 (733)
....++++..+..+|. |+-.|++-+...+.-=+.++..-.......-..+.-.|..++.+| ..|...+.-
T Consensus 23 ~~~l~~~~~~i~~fws----pElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeELr~q~e~~rL~~~~e~ 98 (775)
T PF10174_consen 23 QSKLGSSMNSIKTFWS----PELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEELRAQRELNRLQQELEK 98 (775)
T ss_pred HhHHHHHHHhHhcccc----hhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 3445666667767664 455566555554433334444333333222334445555555555 223333222
Q ss_pred CCccccc---ccc---cccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCccccc
Q 004728 86 RPVHIRQ---SDQ---TAES-------LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVV 152 (733)
Q Consensus 86 ~p~~~~~---~e~---~~~t-------LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~v 152 (733)
....... .|. .... +..++..++..++.+..+-..-.+.+....+.|..|...|.+-..- . . ..
T Consensus 99 ~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~-~-~-~~ 175 (775)
T PF10174_consen 99 AQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLS-A-E-AE 175 (775)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-c-c-ch
Confidence 1111100 000 0011 2333444444555554444444455666677777777766432110 0 0 01
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHH
Q 004728 153 DDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIA 232 (733)
Q Consensus 153 de~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~ 232 (733)
.+...-..++.++..++..|+..+..+-.....++.+++.-+. +.++.. .-..|+..
T Consensus 176 ~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~---~~~~~a--------------------~t~alq~~ 232 (775)
T PF10174_consen 176 EEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQ---MERDDA--------------------ETEALQTV 232 (775)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---cCCCch--------------------hHHHHHHH
Confidence 1122234578888888888888888888777777666555442 111111 11123333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 004728 233 IHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQ 269 (733)
Q Consensus 233 l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~ 269 (733)
|+.=...-..-...+.++-..|..|=..+++...+|+
T Consensus 233 ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~ 269 (775)
T PF10174_consen 233 IEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRD 269 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence 3222222222222345577788888888888877765
No 34
>PRK11637 AmiB activator; Provisional
Probab=84.49 E-value=81 Score=35.99 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 99 SLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 99 tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
.++++|+.+..+++.+.++..+-..++.++..++..+-..|
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666555554555555555555555544
No 35
>PRK09039 hypothetical protein; Validated
Probab=84.38 E-value=42 Score=37.34 Aligned_cols=104 Identities=12% Similarity=0.171 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004728 63 AQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGS 142 (733)
Q Consensus 63 ~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~ 142 (733)
..+-+.|+.+.++|+.|-..|+..- .....|..++..++.+++.++..+.+ +...+...+.
T Consensus 49 ~~~~~eL~~L~~qIa~L~e~L~le~-------~~~~~l~~~l~~l~~~l~~a~~~r~~-------Le~~~~~~~~----- 109 (343)
T PRK09039 49 SGKDSALDRLNSQIAELADLLSLER-------QGNQDLQDSVANLRASLSAAEAERSR-------LQALLAELAG----- 109 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhh-----
Confidence 3456677888888888887777532 23466888888888888876666553 2222221110
Q ss_pred CCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 143 TVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSV 196 (733)
Q Consensus 143 ~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~ 196 (733)
....-..++..+...|..++.+..+-..+|..+..+|..|=..
T Consensus 110 -----------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 110 -----------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred -----------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0112246777888888888888888888888888887666544
No 36
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=84.35 E-value=71 Score=35.25 Aligned_cols=117 Identities=10% Similarity=0.096 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccCcc
Q 004728 71 DSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTV-YISSK 149 (733)
Q Consensus 71 ~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~-~~~~~ 149 (733)
.=..+...+....|..-...+.+..-...|+.++..++..|+.-..--..-...|.....-+.-||. +.. .....
T Consensus 102 ~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~----~~~~l~~~~ 177 (342)
T cd08915 102 EEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLCG----GYKELKAFI 177 (342)
T ss_pred HHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcC----ChHHHHHhC
Confidence 3344455666677753322211223345788888888888887666555555556665555555553 211 00001
Q ss_pred cccC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 150 TVVD-DADLS-LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLS 191 (733)
Q Consensus 150 ~~vd-e~dLS-~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~ 191 (733)
|... ..+.+ ...+..|+..|.+|...+.+|..-+.+++..++
T Consensus 178 Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~ 221 (342)
T cd08915 178 PSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSR 221 (342)
T ss_pred CCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 11112 367889999999999999999999999977653
No 37
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=84.00 E-value=61 Score=34.19 Aligned_cols=177 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc-ccccccccHHHHHHHHHHHHHHHH
Q 004728 37 DKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIR-QSDQTAESLKEELRRILPQVEEMR 115 (733)
Q Consensus 37 d~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~-~~e~~~~tLkeqL~~i~~~LEeLr 115 (733)
..+-..+++.+.+++.+.-........++-..+..+...+..|-..++......+ ..+.....|..++..+...++.
T Consensus 62 ~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~-- 139 (247)
T PF06705_consen 62 KKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFEN-- 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 116 KRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCS 195 (733)
Q Consensus 116 k~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~ 195 (733)
++..|...=..+...+..+...|.. .+..|+..|...+.++++.|..++.
T Consensus 140 -Er~~R~erE~~i~krl~e~~~~l~~-----------------------------~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 140 -ERNEREEREENILKRLEEEENRLQE-----------------------------KIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004728 196 VLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMD 262 (733)
Q Consensus 196 ~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ 262 (733)
.=...-+.. ..-+++.|......|..+...|...=.++...|..+=..|+
T Consensus 190 ~~~~~~e~f-----------------~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ 239 (247)
T PF06705_consen 190 RREKGDEQF-----------------QNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQ 239 (247)
T ss_pred HHhhhhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
No 38
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=83.88 E-value=1.3e+02 Score=38.04 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 004728 360 LEQIELQIAKVKEEAF 375 (733)
Q Consensus 360 Le~~E~EI~rLKe~~~ 375 (733)
+..++.+|..|..-..
T Consensus 967 ~~~l~~~i~~lg~aie 982 (1179)
T TIGR02168 967 EEEARRRLKRLENKIK 982 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554333
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.75 E-value=1e+02 Score=36.54 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 52 RRKVDQANRCRAQLRQAIADSEADLAAICSAM 83 (733)
Q Consensus 52 ~~kVdee~~~r~~L~qsIa~~~~El~~L~seL 83 (733)
++.|++....++.+...|..++.|+..+..-+
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677777777777777777777776665444
No 40
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=83.39 E-value=34 Score=39.25 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCC-CHHHHHHHHHHHHHHH
Q 004728 159 LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSI-SNDAIERLTIAIHKLR 237 (733)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~L-S~~tL~~L~~~l~~Le 237 (733)
..++..|+..|.-|+.-+..-...+...+..|..-...+ .. .+... ....=..+..-...|.
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~----k~-------------~s~~~~~~~~R~~~~~~k~~L~ 212 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKV----KS-------------ASTNASGDSNRAYMESGKKKLS 212 (424)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------------hhccccccchhHHHHHHHHHHH
Confidence 567778888888877777776666555554443222111 00 01111 1233444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004728 238 EVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKEL 317 (733)
Q Consensus 238 eeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKel 317 (733)
..-..-..++.+|...|..| |....+.-|. .+..-++.+..++.++..-=. .|+.+
T Consensus 213 ~~sd~Ll~kVdDLQD~VE~L----------RkDV~~RgvR-------------p~~~qle~v~kdi~~a~~~L~-~m~~~ 268 (424)
T PF03915_consen 213 EESDRLLTKVDDLQDLVEDL----------RKDVVQRGVR-------------PSPKQLETVAKDISRASKELK-KMKEY 268 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHH------------------HHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHcCCc-------------CCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 55555566666666666554 3334333332 245788888888888876544 48889
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 004728 318 VLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKEILERVEKWL 388 (733)
Q Consensus 318 I~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~IlelVekw~ 388 (733)
|...+--|..+|..-. ..+. .-.+.|...|.-+..|++-...-.++|.+|+++-
T Consensus 269 i~~~kp~WkKiWE~EL---------~~V~--------eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~ 322 (424)
T PF03915_consen 269 IKTEKPIWKKIWESEL---------QKVC--------EEQQFLKLQEDLLSDLKEDLKKASETFALVEQCT 322 (424)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCHHHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998542 2111 2245566777888899999999999999999874
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.26 E-value=63 Score=39.43 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 61 CRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIK 136 (733)
Q Consensus 61 ~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (733)
.+.+|.+.+..+...+..|-..|+.- + -..++-+.+++.++.+.|.+..+..+...+++++++.+..|.
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dv----r---~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~ 506 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDV----R---VDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLA 506 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh----e---eccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555556666665665555554421 1 124555655555555555555554444444455444444443
No 42
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.15 E-value=24 Score=39.55 Aligned_cols=105 Identities=16% Similarity=0.307 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 50 VYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVL 129 (733)
Q Consensus 50 vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~ 129 (733)
-||.-++++...+..|-..+.+....|..|-..++-.- ++ ..-+| +.|..+++.+..++.....++.+++
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~l------ek--I~sRE--k~iN~qle~l~~eYr~~~~~ls~~~ 286 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTL------EK--IESRE--KYINNQLEPLIQEYRSAQDELSEVQ 286 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH------HH--HHHHH--HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999999999999998888877321 11 11222 5666777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004728 130 EQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRL 180 (733)
Q Consensus 130 ~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl 180 (733)
.+.......+.. -...|.++...|+..+.+.++|-
T Consensus 287 ~~y~~~s~~V~~----------------~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 287 EKYKQASEGVSE----------------RTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHHhhHHHH----------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 777766654421 02566777777777777777774
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.14 E-value=1.4e+02 Score=37.69 Aligned_cols=44 Identities=27% Similarity=0.139 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHH
Q 004728 292 SVDFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIE 343 (733)
Q Consensus 292 S~~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~ 343 (733)
+...+..++.||.+++.-++..-++ |.++..+.+-| .++++.|.
T Consensus 904 ~~l~~kkle~e~~~~~~e~~~~~k~-v~~l~~k~~wi-------~~ek~~fg 947 (1174)
T KOG0933|consen 904 GELERKKLEHEVTKLESEKANARKE-VEKLLKKHEWI-------GDEKRLFG 947 (1174)
T ss_pred ccchHHHHHhHHHHhhhhHHHHHHH-HHHHHHhccch-------hHHHHhhc
Confidence 3467889999999999998875554 35555555443 35666675
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.24 E-value=78 Score=34.17 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIK 136 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (733)
...++..++..|+.+..++..-.-++..+...+..+-
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.24 E-value=78 Score=34.17 Aligned_cols=233 Identities=19% Similarity=0.231 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 49 EVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDV 128 (733)
Q Consensus 49 ~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l 128 (733)
.-+++.|+.....++++...+..+..++..+-..+...- .....+..++..++..++.....+.+--.++..+
T Consensus 57 ~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~-------~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L 129 (312)
T PF00038_consen 57 RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL-------AERKDLEEELESLRKDLDEETLARVDLENQIQSL 129 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHH
Confidence 456778888888888888888888888877765554210 1124566666666666666555555554555555
Q ss_pred HHHHHHHHH----HhcCCCC-c-cCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHh
Q 004728 129 LEQIEMIKS----EILGSTV-Y-ISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQ-----DHLNTLSSLCSVL 197 (733)
Q Consensus 129 ~~qI~~Lc~----eL~g~~~-~-~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~-----~l~~~I~~L~~~L 197 (733)
+.+|.-+-. +|..--. . ....+.++. ..-..|...|..++.+++....+.. -+..+|..+....
T Consensus 130 ~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~-----~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~ 204 (312)
T PF00038_consen 130 KEELEFLKQNHEEEIEELREQIQSSVTVEVDQ-----FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQS 204 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTSTT---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhccccccceeecc-----cccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccc
Confidence 554443321 1211000 0 000011111 1112355555555555544333222 2222333332222
Q ss_pred CCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhc
Q 004728 198 GIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCN 277 (733)
Q Consensus 198 g~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~ 277 (733)
+..-.. +. -...-+..++..++.|+.+-..-..+...|-..|..|+..++. +++.|.
T Consensus 205 ~~~~~~--------~~-------~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~---~~~~~~----- 261 (312)
T PF00038_consen 205 EKSSEE--------LE-------SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE---EREEYQ----- 261 (312)
T ss_dssp HHHHHH--------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----
T ss_pred cccccc--------cc-------hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH---HHHHHH-----
Confidence 111000 00 0133455666666666666665556667788888888887764 444444
Q ss_pred ccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHhc
Q 004728 278 IAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELV------LKKRLELEEICRNT 332 (733)
Q Consensus 278 i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI------~k~R~ELeeLWdk~ 332 (733)
..|..++.|+..|..--...+.++- ..+-.||..|-..+
T Consensus 262 ----------------~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 262 ----------------AEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566666666666555544443321 23445555554443
No 46
>PRK10869 recombination and repair protein; Provisional
Probab=81.95 E-value=1.2e+02 Score=36.07 Aligned_cols=37 Identities=5% Similarity=0.055 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIK 136 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (733)
+-.++..+...|++++....+|.+++.-++.|+..|-
T Consensus 162 ~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 162 AYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777888888888888888888888777
No 47
>PRK09039 hypothetical protein; Validated
Probab=81.74 E-value=93 Score=34.69 Aligned_cols=132 Identities=11% Similarity=0.148 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004728 98 ESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKS 177 (733)
Q Consensus 98 ~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~ 177 (733)
..++.++..+...|..++....+-..++..|..||..|-..|+.-.. .+ +-+..+..+.+.+++.|+.+.+
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~------~L---~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA------AL---DASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------HH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777776666666666666666666655532110 00 1122333455555555544444
Q ss_pred H----HHHHHHHHHHHHHHHH-HHhCCCcccccc-c---cccccccCcCCCCCCHHHHHHHHHHHHHHHH
Q 004728 178 N----RLKQVQDHLNTLSSLC-SVLGIDFKHTVS-D---IHPSFCENEGSMSISNDAIERLTIAIHKLRE 238 (733)
Q Consensus 178 ~----Rl~kv~~l~~~I~~L~-~~Lg~d~~~~i~-e---v~psl~e~~~s~~LS~~tL~~L~~~l~~Lee 238 (733)
. +...+..++.++..-. ..+|....-.+. . +...+.=+.++..|++.....|......|..
T Consensus 183 ~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~~~~~~vlF~~gsa~L~~~~~~~L~~ia~~l~~ 252 (343)
T PRK09039 183 VALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRFVFQSEVLFPTGSAELNPEGQAEIAKLAAALIE 252 (343)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEEEecCCceeCCCCcccCHHHHHHHHHHHHHHHH
Confidence 3 4556666777664333 455543222111 0 0101111235667888877777766655543
No 48
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.61 E-value=43 Score=35.35 Aligned_cols=107 Identities=13% Similarity=0.219 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 48 LEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVD 127 (733)
Q Consensus 48 l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~ 127 (733)
+.=.+.++.+..+.+.+|++.++.++.|-.- |..++...+.|..+|....+++..
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~-------------------------L~e~~kE~~~L~~Er~~h~eeLrq 57 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKC-------------------------LEEYRKEMEELLQERMAHVEELRQ 57 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777666544321 234555566666777777777777
Q ss_pred HHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcc
Q 004728 128 VLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSV-LGIDFK 202 (733)
Q Consensus 128 l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~-Lg~d~~ 202 (733)
+...|..|-+.|.. +....+..+..+..+..|+ ..++.+|..+-.+ +|++.-
T Consensus 58 I~~DIn~lE~iIkq----------------a~~er~~~~~~i~r~~eey-------~~Lk~~in~~R~e~lgl~~L 110 (230)
T PF10146_consen 58 INQDINTLENIIKQ----------------AESERNKRQEKIQRLYEEY-------KPLKDEINELRKEYLGLEPL 110 (230)
T ss_pred HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCCC
Confidence 77776666654421 1133334444444444444 4455555555555 787653
No 49
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=81.39 E-value=96 Score=34.60 Aligned_cols=118 Identities=10% Similarity=0.105 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccC
Q 004728 74 ADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVD 153 (733)
Q Consensus 74 ~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd 153 (733)
.+-..+....|...........-..+|..++..++..|+.-..-=..-...|.....-|.-||.-...-..+.+....+.
T Consensus 106 ~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~ 185 (353)
T cd09236 106 SEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPS 185 (353)
T ss_pred hHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCC
Confidence 34456666677432222212233457888899999999865555444455566666666655531100000111100111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 154 DADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLS 191 (733)
Q Consensus 154 e~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~ 191 (733)
..+-....+..|+..|.+|...+.+|..-+.+++..++
T Consensus 186 ~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 186 IPPELERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122478889999999999999999999999988754
No 50
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.98 E-value=2e+02 Score=38.04 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc--ccccccccHHHHHHHHHHHHHH
Q 004728 36 RDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIR--QSDQTAESLKEELRRILPQVEE 113 (733)
Q Consensus 36 Rd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~--~~e~~~~tLkeqL~~i~~~LEe 113 (733)
|.++|.+|+.+| .+.....+.+-..|+.+.+.+..|-.+..--|.... ........-...+......++.
T Consensus 740 R~~ri~el~~~I--------aeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~ 811 (1353)
T TIGR02680 740 RLRRIAELDARL--------AAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELAR 811 (1353)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776654 333333444555555666666666666553232110 0000011122234555566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004728 114 MRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSN 178 (733)
Q Consensus 114 Lrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~ 178 (733)
.+.+.......+.....++...|.++..... . +...--...|+.|+..++.++.....
T Consensus 812 a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~--~-----~~l~~~~~aL~~y~~~l~~l~~~~~~ 869 (1353)
T TIGR02680 812 AARKAAAAAAAWKQARRELERDAADLDLPTD--P-----DALEAVGLALKRFGDHLHTLEVAVRE 869 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--h-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888999988853221 0 01111235555666666665544443
No 51
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.96 E-value=1.2e+02 Score=34.81 Aligned_cols=182 Identities=13% Similarity=0.244 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHH
Q 004728 35 DRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEM 114 (733)
Q Consensus 35 eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeL 114 (733)
.+++.+.++.+++ .-....+.+....++.|...|++.+.+++.|-.+|-... ....-+...++.+...++.|
T Consensus 35 a~~~~l~q~q~ei-~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~-------~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 35 ADDKQLKQIQKEI-AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA-------DDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHhhHHHHHHHHHHH
Confidence 3345555655544 556778888888999999999999999999988887532 22345677778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 115 RKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRK---LEEFHRELHELQKEKSNRLKQVQDHLNTLS 191 (733)
Q Consensus 115 rk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~---LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~ 191 (733)
..++.+|... |-.++.-+. ..+..|+. --.++.+. -..+..++..|..+..+|...+......|.
T Consensus 107 ~~q~r~qr~~---La~~L~A~~-r~g~~p~~--------~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~ 174 (420)
T COG4942 107 EVQEREQRRR---LAEQLAALQ-RSGRNPPP--------ALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLA 174 (420)
T ss_pred HHHHHHHHHH---HHHHHHHHH-hccCCCCc--------hhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 8777444333 333334343 33222221 01122222 235566666666666666666655555554
Q ss_pred HHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 192 SLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTM 254 (733)
Q Consensus 192 ~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I 254 (733)
..-..+.-.-.+ ....+........+|.....+|.+.+..+-..+
T Consensus 175 ~~~~~iaaeq~~------------------l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l 219 (420)
T COG4942 175 AVRAEIAAEQAE------------------LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSEL 219 (420)
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333211100 123444555555555555555555555555444
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=79.72 E-value=1.7e+02 Score=36.44 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 004728 359 VLEQIELQIAKVKEEAFSRKEILER 383 (733)
Q Consensus 359 LLe~~E~EI~rLKe~~~srk~Ilel 383 (733)
-++.++.++..++..+..-+.+.+.
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~ 507 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEA 507 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444443
No 53
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=78.42 E-value=1.2 Score=43.75 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCCchhhhhHH
Q 004728 319 LKKRLELEEICRNTHMVPENDHSIE 343 (733)
Q Consensus 319 ~k~R~ELeeLWdk~~~s~eeR~aF~ 343 (733)
++.|.+|-+||+.|++|.-.|..|-
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyFf 27 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYFF 27 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5778999999999999999999885
No 54
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=78.28 E-value=54 Score=37.18 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhh
Q 004728 224 DAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSV 274 (733)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~ 274 (733)
.||+.|+...-+|+.--.+ +--.-...||.+||-=+.|.+-.+..
T Consensus 179 ~~leQLRre~V~lentlEQ------EqEalvN~LwKrmdkLe~ekr~Lq~K 223 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQ------EQEALVNSLWKRMDKLEQEKRYLQKK 223 (552)
T ss_pred hhHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554444433222 22233567888888766666555443
No 55
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=77.73 E-value=1e+02 Score=32.86 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 004728 67 QAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYI 146 (733)
Q Consensus 67 qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~ 146 (733)
..+..-..+...+....|. .........-...+..++..++..|+.-..--..-...|.....-|.-||.-...-..+.
T Consensus 50 ~~L~~E~~ed~~~r~~~g~-~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~l 128 (296)
T PF13949_consen 50 EMLDEEEREDEQLRAKYGE-RWTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASL 128 (296)
T ss_dssp HHHHHHHHHHHHHHHHSTT-TCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcC-CCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhC
Confidence 3444445555666666765 222211122234688888888888887666555555555555555555543110000011
Q ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 147 SSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNT 189 (733)
Q Consensus 147 ~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~ 189 (733)
+.. .....+-....+..|+..+..+..-+.+|..-+..++..
T Consensus 129 p~~-~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~ 170 (296)
T PF13949_consen 129 PSS-SPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEK 170 (296)
T ss_dssp --B----SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCC-CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 001222236778888888888888888888877777664
No 56
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=77.17 E-value=94 Score=32.09 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhcC
Q 004728 297 SYVETEVSRLEELKTSKMKELVL-------KKRLELEEICRNTH 333 (733)
Q Consensus 297 e~le~EV~RLeeLK~~~mKelI~-------k~R~ELeeLWdk~~ 333 (733)
+.+..||.|.+.-|..-|+..+. ....++.++|..++
T Consensus 171 ~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~ 214 (216)
T cd07627 171 ELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFY 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567888887777665554443 35678888898653
No 57
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=76.93 E-value=47 Score=32.97 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHhHhhhhccccc-------------------cc---ccCCCCCCcHHHHHHHHHHHH
Q 004728 247 LQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAAS-------------------EH---EITEPNTLSVDFISYVETEVS 304 (733)
Q Consensus 247 l~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aS-------------------e~---e~t~~~~LS~~~Ie~le~EV~ 304 (733)
+...+.+|.+||+.|++|.-.|-.|.-.+.|..+. .. -..++...-..++.++..|-+
T Consensus 2 Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~ 81 (161)
T PF11995_consen 2 FERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRERE 81 (161)
T ss_pred hHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHH
Confidence 35577899999999999999988886655544321 00 011111222335666666655
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHH
Q 004728 305 RLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIE 347 (733)
Q Consensus 305 RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~ 347 (733)
-|-..-..++ .+.|.++|+-+..++.+..+.-.....
T Consensus 82 ~L~k~m~~rl------s~eere~ly~kWgI~l~sK~RrlQL~~ 118 (161)
T PF11995_consen 82 MLAKQMQKRL------SREEREELYKKWGIPLDSKQRRLQLAN 118 (161)
T ss_pred HHHHHHHHhC------CHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 5432222222 246788899999999888765554333
No 58
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=76.01 E-value=75 Score=36.65 Aligned_cols=147 Identities=18% Similarity=0.321 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhCCCCcccc----ccccccccHHHHHHHHHH
Q 004728 38 KMLLELEQECLEVYR-RKVDQANR--CRAQ-LRQAIADSEADLAAICSAMGERPVHIR----QSDQTAESLKEELRRILP 109 (733)
Q Consensus 38 ~~l~~leqe~l~vy~-~kVdee~~--~r~~-L~qsIa~~~~El~~L~seLge~p~~~~----~~e~~~~tLkeqL~~i~~ 109 (733)
..|..|. |-++|- .+|.+... .|++ ++.-|..++..+..|.. +.+-+- +.++..-.|++-|+....
T Consensus 331 ~~IqdLq--~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIe----dKY~viLEKnd~~k~lqnLqe~la~tqk 404 (527)
T PF15066_consen 331 NRIQDLQ--CSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIE----DKYRVILEKNDIEKTLQNLQEALANTQK 404 (527)
T ss_pred HHHHHhh--hccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----hHhHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344443 777655 45655432 2322 34455556665555533 222110 123445568888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCccCcccccC-CCCCCH-----HHHHHHH--------HHHHH
Q 004728 110 QVEEMRKRKSDRKKQFVDVLEQIEMIK----SEILGSTVYISSKTVVD-DADLSL-----RKLEEFH--------RELHE 171 (733)
Q Consensus 110 ~LEeLrk~K~eR~~ef~~l~~qI~~Lc----~eL~g~~~~~~~~~~vd-e~dLS~-----e~LeeL~--------~~L~~ 171 (733)
+|.+-|.+|+-..-+|+.++..-..|- ++|.....+.. .++. +..||. ++|..++ .-|+.
T Consensus 405 ~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvs--qclEmdk~LskKeeeverLQ~lkgelEkat~SALdl 482 (527)
T PF15066_consen 405 HLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVS--QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDL 482 (527)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777666665554433322 22211110000 0000 122332 3344444 56777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004728 172 LQKEKSNRLKQVQDHLNTLSS 192 (733)
Q Consensus 172 Lq~EK~~Rl~kv~~l~~~I~~ 192 (733)
|+.||..|-++|..+..+.+.
T Consensus 483 LkrEKe~~EqefLslqeEfQk 503 (527)
T PF15066_consen 483 LKREKETREQEFLSLQEEFQK 503 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887543
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.99 E-value=64 Score=39.42 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 161 KLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGI 199 (733)
Q Consensus 161 ~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~ 199 (733)
-|.+-+.+|+.++.....|-++|.+|+..|.+++.+|-.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345667788888888889999999999999999999954
No 60
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.55 E-value=1.8e+02 Score=34.52 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIK 136 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (733)
+..++..+...|+++++...++.+++..++.++..|.
T Consensus 166 ~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 166 LYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777777777777777777776
No 61
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.32 E-value=2.9e+02 Score=36.89 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 166 HRELHELQKEKSNRLKQVQDHLNTLSSLCSVLG 198 (733)
Q Consensus 166 ~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg 198 (733)
...+..++.+.+.-......+......++..-|
T Consensus 455 e~qL~elE~kL~~lea~leql~~~~~~l~~~~G 487 (1486)
T PRK04863 455 TEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG 487 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333334444444444444444444445555544
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.18 E-value=1.4e+02 Score=33.00 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-ccc--c--ccccccccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 62 RAQLRQAIADSEADLAAICSAMGERP-VHI--R--QSDQTAESLKEELRRILPQ--VEEMRKRKSDRKKQFVDVLEQIEM 134 (733)
Q Consensus 62 r~~L~qsIa~~~~El~~L~seLge~p-~~~--~--~~e~~~~tLkeqL~~i~~~--LEeLrk~K~eR~~ef~~l~~qI~~ 134 (733)
...|.+-|.+.+.-+..+-.+.-..+ --. + .++.....+..|+..++.+ ++.-..-++=|++.+..++..+..
T Consensus 72 C~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~ 151 (312)
T smart00787 72 CKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDE 151 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777776666666654332 111 1 1223344566777766644 444444577799999999988888
Q ss_pred HHHHh
Q 004728 135 IKSEI 139 (733)
Q Consensus 135 Lc~eL 139 (733)
-...|
T Consensus 152 ~~~~l 156 (312)
T smart00787 152 NLEGL 156 (312)
T ss_pred HHHHH
Confidence 77666
No 63
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.79 E-value=1.4e+02 Score=32.77 Aligned_cols=122 Identities=16% Similarity=0.255 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 52 RRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQ 131 (733)
Q Consensus 52 ~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~q 131 (733)
+.-+.+.+..|..+.+.++...++-..|-....+.. .....+..+.+.+..++.+++..+.+-...+..+...
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~-------e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~ 91 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELR-------EKAQELREERDEINEEVQELKEKRDEINAKLQELRKE 91 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555544443333211 1134566677777777777777776666666666666
Q ss_pred HHHHHHHhcCCCCccCccc------------ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 132 IEMIKSEILGSTVYISSKT------------VVDDADLSLRKLEEFHRELHELQKEKSNRLK 181 (733)
Q Consensus 132 I~~Lc~eL~g~~~~~~~~~------------~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~ 181 (733)
+..+...+.+.. ..+... .....+||++.=..|-..|..|++++..+.+
T Consensus 92 ~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k 152 (294)
T COG1340 92 YRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665543210 000000 0013466666666666666666666655543
No 64
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=74.77 E-value=1.4e+02 Score=32.99 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCC
Q 004728 75 DLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDD 154 (733)
Q Consensus 75 El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde 154 (733)
+-..+....|..|. +..-..+|+.++..++..|+.-..-=..-...|.....-+.-||.....-..+.+.....+
T Consensus 108 ed~~~R~k~G~~~~----S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~- 182 (337)
T cd09234 108 QEKEFQEAVGKRGS----SIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPSPSLLD- 182 (337)
T ss_pred HHHHHHHHcCCCCC----chhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCccccC-
Confidence 33455566775421 1122456899999999999876665444445555555555555532110000111111111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 155 ADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLS 191 (733)
Q Consensus 155 ~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~ 191 (733)
.+-....+..|+..+..+..-+.+|..-+.+++..++
T Consensus 183 ~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 183 RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1123467889999999999999999999999887754
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.10 E-value=14 Score=45.20 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 157 LSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSL 193 (733)
Q Consensus 157 LS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L 193 (733)
.+.+++..|+..+..|+.+...=..++..+..+|..+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468888999999999988877667777666666543
No 66
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.87 E-value=58 Score=32.25 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNR 179 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~R 179 (733)
-.+++..+...+.+|+.+-.+...+++.+..++..|.+.+ |.+ ++...+..|+.+...-
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~------------------t~~---el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP------------------TNE---ELREEIEELEEEIEEL 128 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------CHH---HHHHHHHHHHHHHHHH
Confidence 3556777777777777776666666666666666665432 222 3444444444443332
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 180 LKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKL 247 (733)
Q Consensus 180 l~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl 247 (733)
..++..+.. +...+|.+-+..+......+..+-..|...|
T Consensus 129 ~~kL~~l~~----------------------------~~~~vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 129 EEKLEKLRS----------------------------GSKPVSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHh----------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222221 1223678888888888888888777776543
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.55 E-value=2e+02 Score=34.20 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=29.4
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHhcCchhhc
Q 004728 351 SGAMDTANVLEQIELQIAKVKEEAFSRKEILERVEKWLGACEEECWLEEYNRDDNRYN 408 (733)
Q Consensus 351 sg~~~~eeLLe~~E~EI~rLKe~~~srk~IlelVekw~~l~eEe~~LEe~skDpnRy~ 408 (733)
.|.++-..+=...+.-..++..+.....+|.+.+..-..++.. .|||.
T Consensus 466 ~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy----------~nRfr 513 (569)
T PRK04778 466 EKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY----------ANRYR 513 (569)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhccC
Confidence 4555544444466666666777777777777776666544433 67885
No 68
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.45 E-value=2.4e+02 Score=34.93 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 49 EVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDV 128 (733)
Q Consensus 49 ~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l 128 (733)
..||+-|...+..+..+..+|..++..+..+-.++.- .+ .....++.++..-...||.++.+...-.+++..-
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~--lQ-----~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQK--LQ-----DTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 5788888777666666656665555554444333321 00 1112355666666677777777777777777777
Q ss_pred HHHHHHHHHHhc
Q 004728 129 LEQIEMIKSEIL 140 (733)
Q Consensus 129 ~~qI~~Lc~eL~ 140 (733)
..+|..+..+|.
T Consensus 161 ~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 161 AHDIFMIGEDLH 172 (1265)
T ss_pred hHHHHHHHHHHh
Confidence 777777777774
No 69
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.44 E-value=67 Score=39.21 Aligned_cols=163 Identities=19% Similarity=0.221 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 004728 13 TTCGSLLYELQIIWDEVGETDTDRDKMLLELEQECLEVYRRKVDQANRC------RAQLRQAIADSEADLAAICSAMGER 86 (733)
Q Consensus 13 t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~------r~~L~qsIa~~~~El~~L~seLge~ 86 (733)
.|..++|.||..+--+.|.++.+|. +.++|. |..++=..+...+.. -.-|+-+.+.++..|.-|-..|.+.
T Consensus 337 rt~KYLLgELkaLVaeq~DsE~qRL--itEvE~-cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreq 413 (861)
T PF15254_consen 337 RTLKYLLGELKALVAEQEDSEVQRL--ITEVEA-CISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQ 413 (861)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHH--HHHHHH-HHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5788999999999988877777664 455654 887776554443321 1223344444444444444444332
Q ss_pred Ccccc-----ccc------cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCC
Q 004728 87 PVHIR-----QSD------QT-AESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDD 154 (733)
Q Consensus 87 p~~~~-----~~e------~~-~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde 154 (733)
.-... ..+ +. -.+|+.||......+|.|+.+-++.++.+...+++=.+|...+....
T Consensus 414 e~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd----------- 482 (861)
T PF15254_consen 414 EKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKD----------- 482 (861)
T ss_pred HhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 11000 000 00 13577777777788888888888888888887777777776553211
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 155 ADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTL 190 (733)
Q Consensus 155 ~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I 190 (733)
.-.++.-..|..+..+++.|.++-+.+|..++-.+
T Consensus 483 -~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kL 517 (861)
T PF15254_consen 483 -QELLENKQQFDIETTRIKIEVEEALVNVKSLQFKL 517 (861)
T ss_pred -HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 00123334566666777777777777777766654
No 70
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.95 E-value=58 Score=39.81 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 219 MSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLEL 257 (733)
Q Consensus 219 ~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eL 257 (733)
+..+.+-+..|+..+..|+.+...-..++..|..+|..+
T Consensus 498 ~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 498 LSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456677788888888777666555666666666544
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.45 E-value=1.6e+02 Score=32.51 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 004728 218 SMSISNDAIERLTIAIHKLREV 239 (733)
Q Consensus 218 s~~LS~~tL~~L~~~l~~Leee 239 (733)
+.+.|..-+..|...++.|+..
T Consensus 265 ~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 265 CRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 5667787888888888777543
No 72
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.24 E-value=2.2e+02 Score=33.68 Aligned_cols=126 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCccccc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 108 LPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVV-DDADLSLRKLEEFHRELHELQKEKSNRLKQVQDH 186 (733)
Q Consensus 108 ~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~v-de~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l 186 (733)
+..++++...-++|..+..+-++-+.+.|..|...+.-. ..+.. .+.|.+.+ +..+-.+++.|+.-.+.-..+|...
T Consensus 611 r~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~-lp~l~~AErdFk~E-lq~~~~~~~~L~~~iET~~~~~~KQ 688 (741)
T KOG4460|consen 611 RKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSE-LPVLSDAERDFKKE-LQLIPDQLRHLGNAIETVTMKKDKQ 688 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc-CCcchhHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777788898899888888888888885433210 00111 12222211 1222222222222222222222222
Q ss_pred HHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 187 LNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLAT 252 (733)
Q Consensus 187 ~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~ 252 (733)
+..+-.....|. -....+++..+..++..+.+|-.+-....+++.....
T Consensus 689 ~~H~~~v~~al~-----------------K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 689 QQHMEKVLSALP-----------------KPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRN 737 (741)
T ss_pred HHHHHHHHhhcc-----------------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111111111 0134567777888888888888887777777766554
No 73
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=70.09 E-value=2.8e+02 Score=34.36 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 160 RKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLG 198 (733)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg 198 (733)
-+|+++...++.+..+.+.-...+...-..+++-|.+|.
T Consensus 141 telE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt 179 (1265)
T KOG0976|consen 141 IEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELN 179 (1265)
T ss_pred HHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHh
Confidence 567777777777777777777777777777777676663
No 74
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=70.09 E-value=1.7e+02 Score=31.97 Aligned_cols=29 Identities=3% Similarity=0.142 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 56 DQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 56 dee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
.+.+..|..+-..+..+..++..+....+
T Consensus 72 ~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 72 QELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444455555555555555554444
No 75
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.04 E-value=4e+02 Score=36.15 Aligned_cols=264 Identities=17% Similarity=0.250 Sum_probs=155.0
Q ss_pred HHHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccccccc--
Q 004728 18 LLYELQIIWDEVGETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG-ERPVHIRQSD-- 94 (733)
Q Consensus 18 ~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg-e~p~~~~~~e-- 94 (733)
||.-+..+=+.+-..+..-+.++....++-++-....|++..+.....-+.|..+..+.+.+-..+- ..+.+...++
T Consensus 544 LL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss 623 (1822)
T KOG4674|consen 544 LLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSS 623 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCch
Confidence 3344444444454444445667776666666777777777777777777777777777666532211 1111100011
Q ss_pred ---cc--cccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHH
Q 004728 95 ---QT--AESLKEELRRILPQVEEMRKRKSDRK----KQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEF 165 (733)
Q Consensus 95 ---~~--~~tLkeqL~~i~~~LEeLrk~K~eR~----~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL 165 (733)
.. ..+....|..+...++.++.++.+++ ++|..++.++..|-..++-.. ....++.++++-|
T Consensus 624 ~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~---------~~~~fA~ekle~L 694 (1822)
T KOG4674|consen 624 ALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLK---------NELNLAKEKLENL 694 (1822)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHH
Confidence 11 12235556666777777777766654 456777777777777774211 1346778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004728 166 HRELHELQKEKSNRLKQVQDHLNTLSS---LCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQ 242 (733)
Q Consensus 166 ~~~L~~Lq~EK~~Rl~kv~~l~~~I~~---L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~ 242 (733)
+..|+.++.+...=.+....+...|+. ....+.- ....++..+..|...+..|+.++.-
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~------------------eL~~a~~k~~~le~ev~~LKqE~~l 756 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQ------------------ELLSANEKLEKLEAELSNLKQEKLL 756 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888887433333333333322 1111110 1112567889999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004728 243 RMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELVLKKR 322 (733)
Q Consensus 243 R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI~k~R 322 (733)
+...-..|......|..... ... +....+.....+.++.+.-.+.++..=|..+.
T Consensus 757 l~~t~~rL~~e~~~l~~e~~-------~L~------------------~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~ 811 (1822)
T KOG4674|consen 757 LKETEERLSQELEKLSAEQE-------SLQ------------------LLLDNLQTQKNELEESEMATKDKCESRIKELE 811 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776667666666655211 111 12245666666777777766666666666666
Q ss_pred HHHHHHHHhcC
Q 004728 323 LELEEICRNTH 333 (733)
Q Consensus 323 ~ELeeLWdk~~ 333 (733)
.+|..+-..+.
T Consensus 812 ~el~~lk~klq 822 (1822)
T KOG4674|consen 812 RELQKLKKKLQ 822 (1822)
T ss_pred HHHHHHHHHHH
Confidence 67776666544
No 76
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.10 E-value=3e+02 Score=33.94 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 118 KSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVL 197 (733)
Q Consensus 118 K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~L 197 (733)
-++|++.+.+-++.|.+=|..+...... ....+|..+ .++..+|+.++.+...=...+.+++.++......+
T Consensus 598 LaeR~e~a~d~Qe~L~~R~~~vl~~l~~-------~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 598 LAERYEEAKDKQEKLMKRVDRVLQLLNS-------QLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555544444322110 122356544 45555555555544332233333333333333222
Q ss_pred CCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 198 GIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATT 253 (733)
Q Consensus 198 g~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~ 253 (733)
. . .... ...+..|+......++..+.+.-++=.+-+++++.+...
T Consensus 670 ~-~-~~~~---------~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 670 E-S-QKSP---------KKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred h-c-cccc---------cCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 0 0000 012456888888888888887776666666666555544
No 77
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.73 E-value=2.4e+02 Score=32.64 Aligned_cols=141 Identities=14% Similarity=0.175 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 56 DQANRCRAQLRQAIADSEADLAAICSAMGERPVHIR-QSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEM 134 (733)
Q Consensus 56 dee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~-~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~ 134 (733)
.+.+.........++..++.++.|...++..+-... ........+..+|..+..++..+...+-+..-.+.+++.+|..
T Consensus 207 ~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~ 286 (498)
T TIGR03007 207 SEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQ 286 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 333444444555566667777777777764321111 0111234688899999999999999888888888888888888
Q ss_pred HHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 135 IKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLG 198 (733)
Q Consensus 135 Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg 198 (733)
+-..+.....-... ...........+..+...+..++.+...-..++..+..++..+-..++
T Consensus 287 l~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 287 LEEQKEEEGSAKNG--GPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHhhcccccc--CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877432110000 000111112234566666777777666666666666666655544443
No 78
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=67.61 E-value=2.1e+02 Score=31.91 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 224 DAIERLTIAIHKLREVKIQRMQKLQDLATTML 255 (733)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~ 255 (733)
..+..|+..+.+|+.+|.+|...+.+|+.+++
T Consensus 198 ~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~ 229 (356)
T cd09237 198 KQIKQLEELLEDLNLIKEERQRVLKDLKQKIH 229 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999988764
No 79
>PHA02562 46 endonuclease subunit; Provisional
Probab=66.98 E-value=2.6e+02 Score=32.73 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 159 LRKLEEFHRELHELQKEKSNRLKQVQDHLNT 189 (733)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~ 189 (733)
..++..|...+..|+.++..-...+.++...
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~ 328 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEI 328 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777776666666665555555444443
No 80
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=66.11 E-value=1.9e+02 Score=31.95 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhHhCCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q 004728 16 GSLLYELQIIWDEVGETDTDR-----DKMLLELEQECLEVYRRKVDQANRCRAQLRQA----------IADSEADLAAIC 80 (733)
Q Consensus 16 ~~~l~eLq~IWdEIG~~e~eR-----d~~l~~leqe~l~vy~~kVdee~~~r~~L~qs----------Ia~~~~El~~L~ 80 (733)
.+++.+|..+-.|+|.|...- ...+..- +.|+.++.-.+.|....|--..+. =.....++..+|
T Consensus 61 ~~f~~Els~~L~El~CPy~~L~~G~~~~rl~~~-~~~l~LL~fL~sELqaarl~~~k~~~~~~~~~~~~s~~~~~l~~i~ 139 (318)
T PF10239_consen 61 ESFLLELSGFLKELGCPYSALTSGDISDRLQSK-EDRLLLLEFLCSELQAARLLAKKKPEEPEQEEEKESEVAQELKAIC 139 (318)
T ss_pred HHHHHHHHHHHHhcCCCcHHHcCCcchhhhcCH-HHHHHHHHHHHHHHHHHHHHHhccCCccccccccccHHHHHHHHHH
Confidence 357889999999999986632 1122211 224445555555543222111111 234456889999
Q ss_pred HHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHH
Q 004728 81 SAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLR 160 (733)
Q Consensus 81 seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e 160 (733)
..||++..+. ..+..+- |..+..+|..+...+ ++.+.. .|.+ ...||.+
T Consensus 140 ~~L~l~~p~~------~i~~~~l---------------------f~~i~~ki~~~L~~l--p~~~~~-~PLl-~~~L~~~ 188 (318)
T PF10239_consen 140 QALGLPKPPP------NITASQL---------------------FSKIEAKIEELLSKL--PPGHMG-KPLL-KKSLTDE 188 (318)
T ss_pred HHhCCCCCCC------CCCHHHH---------------------HHHHHHHHHHHHHhc--CccccC-CCCc-CCCCCHH
Confidence 9999864321 1233332 444444555555555 222211 1233 6789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004728 161 KLEEFHRELHELQKEKSNRLKQV 183 (733)
Q Consensus 161 ~LeeL~~~L~~Lq~EK~~Rl~kv 183 (733)
+.+.|...-+.|..||.-|.+-+
T Consensus 189 Qw~~Le~i~~~L~~EY~~RR~mL 211 (318)
T PF10239_consen 189 QWEKLEKINQALSKEYECRRQML 211 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998653
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=65.92 E-value=2.9e+02 Score=32.92 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004728 293 VDFISYVETEVSRLEELK 310 (733)
Q Consensus 293 ~~~Ie~le~EV~RLeeLK 310 (733)
.+-|..+..|++++++--
T Consensus 370 k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHL 387 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777777776543
No 82
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=65.24 E-value=3e+02 Score=32.83 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHhHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 13 TTCGSLLYELQIIWDEVG-ETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGE 85 (733)
Q Consensus 13 t~c~~~l~eLq~IWdEIG-~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge 85 (733)
..+...+.++..=|++|- ..=.+-+.++.++|+. +.+-.+..++..-..+.+.|..++.++..|..+|..
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~---~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~ 126 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY---ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDE 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778899999999986 3334556777777763 233345555555667777888888888888777764
No 83
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.92 E-value=4.1e+02 Score=34.37 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=9.7
Q ss_pred cCCcccCCCccccCCCCCC
Q 004728 580 RRGLDIAGFPIKKHSLGAC 598 (733)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~ 598 (733)
-|+.-|.++=||-..-||-
T Consensus 1232 fkNVSIVanYIkErTkNAQ 1250 (1293)
T KOG0996|consen 1232 FKNVSIVANYIKERTKNAQ 1250 (1293)
T ss_pred cccchhHHHHHHHhccCCe
Confidence 3455555555554444443
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=63.41 E-value=3.3e+02 Score=32.80 Aligned_cols=61 Identities=13% Similarity=0.277 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 114 MRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTL 190 (733)
Q Consensus 114 Lrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I 190 (733)
...++.++.+++.+++.+++.|...+... ...++.+...+..+..+..+.......+..+.
T Consensus 319 ~~~~~~~~~~el~~l~~~l~~l~~~i~~~----------------~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 319 EEDEQEEQEQELEELQEQLDELESQIEEL----------------EAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888888888888877431 14555666666666666665555555554443
No 85
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.93 E-value=1.8e+02 Score=30.78 Aligned_cols=37 Identities=14% Similarity=0.325 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 224 DAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNL 260 (733)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~ 260 (733)
.-|..+.++...|..+|....+.+..+-..|..|=+.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999999998888888777777665443
No 86
>PRK02224 chromosome segregation protein; Provisional
Probab=61.50 E-value=4.1e+02 Score=33.15 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcC-CCCCCHHHHHHHHHHHHHHHH
Q 004728 160 RKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEG-SMSISNDAIERLTIAIHKLRE 238 (733)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~-s~~LS~~tL~~L~~~l~~Lee 238 (733)
..|.+++..++.++.....-...+..+...|..+-..|.- ..+| +|..+- ...+ .+.++.+...+..+..
T Consensus 412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~-------~~Cp-~C~r~~~~~~~-~~~~~~~~~~~~~~~~ 482 (880)
T PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEA-------GKCP-ECGQPVEGSPH-VETIEEDRERVEELEA 482 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCC-CCCCcCCCcch-hhhHHHHHHHHHHHHH
Confidence 4555555555555555554444444444444444332211 1233 333211 1111 2555566666666555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004728 239 VKIQRMQKLQDLATTMLE 256 (733)
Q Consensus 239 eK~~R~~kl~eL~~~I~e 256 (733)
....-...+.++...+..
T Consensus 483 ~~~~le~~l~~~~~~~e~ 500 (880)
T PRK02224 483 ELEDLEEEVEEVEERLER 500 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555544445444444443
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.11 E-value=3.6e+02 Score=32.48 Aligned_cols=205 Identities=15% Similarity=0.143 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHH
Q 004728 225 AIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVS 304 (733)
Q Consensus 225 tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~ 304 (733)
-++.|+..++.|......-...+..+...+..++.....-..+...-...+. ++. =..+.+...+.=|.
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~----------k~~~lL~d~e~ni~ 397 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKK----------KTVELLPDAEENIA 397 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----------HHHHHhcCcHHHHH
Confidence 4666666666666666666666666666666666655433322221111110 000 00112222233334
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004728 305 RLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKEILERV 384 (733)
Q Consensus 305 RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~IlelV 384 (733)
+|+.+-..... ...+|..-|..--.+..+...-.. .... +--......+..+++.....+.|..-+
T Consensus 398 kL~~~v~~s~~-----rl~~L~~qWe~~R~pL~~e~r~lk--~~~~-------~~~~e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 398 KLQALVEASEQ-----RLVELAQQWEKHRAPLIEEYRRLK--EKAS-------NRESESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHH--HHHh-------hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332 335666777766555433221111 0000 001123334566666667777777777
Q ss_pred HHHHHHhHH-HHHHHHHhcCchhhccCCCCccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHcCCeeEE
Q 004728 385 EKWLGACEE-ECWLEEYNRDDNRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASKTIAWEKERGVEFLY 454 (733)
Q Consensus 385 ekw~~l~eE-e~~LEe~skDpnRy~nrrGah~~LlreEK~Rk~v~KLPklee~L~~kl~~WE~e~g~pFl~ 454 (733)
..|.....+ ...++...+|.||-.--+.-+-+-..-.|++.-|.|+-.=...|...|..-...-.+.|.|
T Consensus 464 ~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v 534 (594)
T PF05667_consen 464 RQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTV 534 (594)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 777665544 3458889999999321122222233445555555554444455555555555555556655
No 88
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.61 E-value=1.6e+02 Score=30.96 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 98 ESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 98 ~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
..+++.+..++..|+++.++|.+.++++.+++.+......+|
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888999999999999998888877777766655544
No 89
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.42 E-value=1e+02 Score=32.37 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHH
Q 004728 160 RKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREV 239 (733)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~Leee 239 (733)
+.+++++..++++++||..-++...++..+...+ ++-|.+|.....+|+++
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~-----------------------------~erlk~le~E~s~LeE~ 185 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEV-----------------------------QERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH
Confidence 5666777777888888777666666655543211 45678888888889888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 004728 240 KIQRMQKLQDLATTMLELWNLMDTPVEEQ 268 (733)
Q Consensus 240 K~~R~~kl~eL~~~I~eLW~~L~ip~eEr 268 (733)
...+.-++.+|..+..+|-..+..|++++
T Consensus 186 ~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 186 LKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 88888888888888888888888877654
No 90
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=59.26 E-value=3.8e+02 Score=32.06 Aligned_cols=199 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 102 EELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLK 181 (733)
Q Consensus 102 eqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~ 181 (733)
..+..++..|+.++....++.++..-++-|+..|- ..+|...+.++|. +...|+.
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele-----------------~~~l~~gE~e~L~--------~e~~rLs 218 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEELE-----------------ELNLQPGEDEELE--------EERKRLS 218 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hcCCCCchHHHHH--------HHHHHHh
Q ss_pred HHHHHHHHHHHHHHHh--CCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 182 QVQDHLNTLSSLCSVL--GIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWN 259 (733)
Q Consensus 182 kv~~l~~~I~~L~~~L--g~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~ 259 (733)
....+...+...+..| .-+.......+...+.. ...+......+..+.+...+-.-.+.+...+|..+-+
T Consensus 219 n~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~--------l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~ 290 (557)
T COG0497 219 NSEKLAEAIQNALELLSGEDDTVSALSLLGRALEA--------LEDLSEYDGKLSELAELLEEALYELEEASEELRAYLD 290 (557)
T ss_pred hHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH--------HHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHhcC
Q 004728 260 LMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSK------MKELVLKKRLELEEICRNTH 333 (733)
Q Consensus 260 ~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~------mKelI~k~R~ELeeLWdk~~ 333 (733)
.+++++ .-++..+.-+..|..+++.. +..+..++..+|..|
T Consensus 291 ~le~Dp----------------------------~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L----- 337 (557)
T COG0497 291 ELEFDP----------------------------NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL----- 337 (557)
T ss_pred cCCCCH----------------------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-----
Q ss_pred CCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004728 334 MVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKEILERVEK 386 (733)
Q Consensus 334 ~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~IlelVek 386 (733)
...++-++.++.++..++..|..-...|....+
T Consensus 338 --------------------~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 338 --------------------DNSEESLEALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred --------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 91
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=58.79 E-value=3.4e+02 Score=31.32 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCccccccccccccccCcCCCCCCHHHHHHHHHHHHH
Q 004728 159 LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVL---GIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHK 235 (733)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~L---g~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~ 235 (733)
...|..|+..|.-|+.-++.-...+...+..|..=...+ +.+... +.+-..+..-..+
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~-------------------~s~R~y~e~~k~k 214 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASG-------------------SSNRAYVESSKKK 214 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------------------CcchHHHHHhHHH
Confidence 477888888899998888888777666666554433332 111110 1112222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHH
Q 004728 236 LREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMK 315 (733)
Q Consensus 236 LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mK 315 (733)
|.++-..-+.++.+|..-|..| |... +..|+.| +..-++.+..++..+..-=. .|.
T Consensus 215 L~~~Sd~lltkVDDLQD~vE~L----------RkDV--~~RgVRp-----------~~~qLe~v~kdi~~a~keL~-~m~ 270 (426)
T smart00806 215 LSEDSDSLLTKVDDLQDIIEAL----------RKDV--AQRGVRP-----------SKKQLETVQKELETARKELK-KME 270 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHH--HHcCCCC-----------CHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3333334444444444444333 2222 2334443 34666777777776665433 477
Q ss_pred HHHHHHHHHHHHHHHhc-CCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 004728 316 ELVLKKRLELEEICRNT-HMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKEILERVEKWL 388 (733)
Q Consensus 316 elI~k~R~ELeeLWdk~-~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~IlelVekw~ 388 (733)
++|..-+--|..+|..= ..-.++ -+.|...|.-+..|++-...-.+.|.+|+.+-
T Consensus 271 ~~i~~eKP~WkKiWE~EL~~VcEE------------------qqfL~lQedL~~DL~dDL~ka~eTf~lVeq~~ 326 (426)
T smart00806 271 EYIDIEKPIWKKIWEAELDKVCEE------------------QQFLTLQEDLIADLKEDLEKAEETFDLVEQCC 326 (426)
T ss_pred HHHhhcChHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888642 211222 33466677778888888888899999999884
No 92
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.73 E-value=5e+02 Score=33.30 Aligned_cols=105 Identities=17% Similarity=0.370 Sum_probs=53.0
Q ss_pred HhHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHH
Q 004728 26 WDEVGETD--TDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEE 103 (733)
Q Consensus 26 WdEIG~~e--~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeq 103 (733)
||+=-++. ..|++.+.+|.. +.. -+..|.+.......|-..|+-+..++..+-..|.... ....-+..+
T Consensus 649 wdek~~~~L~~~k~rl~eel~e-i~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~-------~El~~~~~~ 719 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKE-IQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNE-------LELQRTESE 719 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-HHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 77643322 234444444432 333 2224444444555566666666666666554443211 112223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 104 LRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
++.+.|.+-++.++-..|-..+.+|+.++..+-+.|
T Consensus 720 i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 720 IDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666667777666666555
No 93
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=57.81 E-value=4.2e+02 Score=32.13 Aligned_cols=236 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004728 64 QLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGST 143 (733)
Q Consensus 64 ~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~ 143 (733)
+|..+|..+..|-+.....|. .....|+++...+...+..|+++|..-+..+.+|..+|..|-..+...+
T Consensus 1 ql~e~l~qlq~Erd~ya~~lk----------~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 1 QLMESLKQLQAERDQYAQQLK----------EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred ChHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q ss_pred CccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCH
Q 004728 144 VYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISN 223 (733)
Q Consensus 144 ~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~ 223 (733)
. ......+|... ..|+..+..|+++++.=..++......-..|......- .
T Consensus 71 ~------~~~pa~pse~E-~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~Eq----------------------E 121 (617)
T PF15070_consen 71 P------PEPPAGPSEVE-QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQ----------------------E 121 (617)
T ss_pred C------ccccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccC
Q 004728 224 DAIERLTIAIHKLREVKIQRMQKL-----------------QDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEIT 286 (733)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl-----------------~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t 286 (733)
.-|..|...+.++++....+.+.+ .+|..+|.+|=+ .|..
T Consensus 122 erL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~----------~Fv~------------- 178 (617)
T PF15070_consen 122 ERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQD----------AFVK------------- 178 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHH----------HHHH-------------
Q ss_pred CCCCCcHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHH
Q 004728 287 EPNTLSVDF---ISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQI 363 (733)
Q Consensus 287 ~~~~LS~~~---Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~ 363 (733)
||.+. -.++..|-..-.+|.+. ...+..+|..+=.++..-..+-..... ....++..+
T Consensus 179 ----ltne~~elt~~lq~Eq~~~keL~~k-----l~~l~~~l~~~~e~le~K~qE~~~Lq~----------q~dq~~~~L 239 (617)
T PF15070_consen 179 ----LTNENMELTSALQSEQHVKKELQKK-----LGELQEKLHNLKEKLELKSQEAQSLQE----------QRDQYLGHL 239 (617)
T ss_pred ----HHHhhhHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHH----------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHH
Q 004728 364 ELQIAKVKEEAFSRKEI 380 (733)
Q Consensus 364 E~EI~rLKe~~~srk~I 380 (733)
....+........+..+
T Consensus 240 qqy~a~~q~l~~e~e~L 256 (617)
T PF15070_consen 240 QQYVAAYQQLASEKEEL 256 (617)
T ss_pred HHHHHHHHHHHHHHHHH
No 94
>PF12064 DUF3544: Domain of unknown function (DUF3544); InterPro: IPR021931 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 198 to 216 amino acids in length. This domain is found associated with PF00628 from PFAM, PF01753 from PFAM, PF00439 from PFAM, PF00855 from PFAM.
Probab=56.23 E-value=36 Score=34.08 Aligned_cols=79 Identities=28% Similarity=0.367 Sum_probs=47.8
Q ss_pred CCCccccccCccccCCCCCCCCCCCCCCCCCccccchhhhccccccccccCCcccccccCcCCcccCCCccccCCCCCC-
Q 004728 520 SVSHRRLSVGGAMLQTPKPELPSSTKATPHPRTVKKIDRILQNDHTNVRMDDGFAALSAGRRGLDIAGFPIKKHSLGAC- 598 (733)
Q Consensus 520 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 598 (733)
+..+||+++.- +||-|.|++.++|.-.--..+-. .+..-.+-.|+|--..|..+-|+.-..--|+
T Consensus 7 ~~~grRis~tD------mPrSPmSTnSSvHTGSDgEq~~~--------~k~~~s~h~StgEESMD~TASPas~k~g~ags 72 (207)
T PF12064_consen 7 GGMGRRISLTD------MPRSPMSTNSSVHTGSDGEQDEE--------KKSAPSSHYSTGEESMDCTASPASTKTGPAGS 72 (207)
T ss_pred CCCcccccccc------CCCCCccCCCccccCcchhhhhh--------hccCcccccccccccccccCCCCCCCcCCCCc
Confidence 34479998753 56666677777764321111100 0111123346677777877777766655555
Q ss_pred CCCCCCcCCCCCCCCcc
Q 004728 599 EPQSPMIRKPFSPISST 615 (733)
Q Consensus 599 ~~~~~~~~~~~~~~~~~ 615 (733)
...|| |||+|-.++
T Consensus 73 ~~~SP---K~f~p~~~~ 86 (207)
T PF12064_consen 73 SSGSP---KPFNPQAST 86 (207)
T ss_pred cCCCC---CCCCCCCCC
Confidence 68899 999998866
No 95
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=56.16 E-value=3.3e+02 Score=30.39 Aligned_cols=200 Identities=11% Similarity=0.101 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccccccccHHHHHH---------HHHHHHHHH-
Q 004728 47 CLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHI--RQSDQTAESLKEELR---------RILPQVEEM- 114 (733)
Q Consensus 47 ~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~--~~~e~~~~tLkeqL~---------~i~~~LEeL- 114 (733)
...+|....++.- ++.+...|..+-.++......|++|.... ..+..-..+|.+.-. .|...+.+|
T Consensus 7 a~s~Y~erk~~lV--r~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l~ 84 (353)
T cd09236 7 AISIYDDRKDRLV--NESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASLDDVA 84 (353)
T ss_pred HHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5678887777664 45567788888999999999999875321 001111112332212 222333333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 004728 115 --RKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRL---KQVQDHLNT 189 (733)
Q Consensus 115 --rk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl---~kv~~l~~~ 189 (733)
...-.+.+.+...+......=|..+- .-|.. .--...+|..--..|+..+..++.-...=. ..+......
T Consensus 85 ~l~~~~~~~L~e~~~~L~~E~~ed~~~R--~k~g~---~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~~v~~k~~~ 159 (353)
T cd09236 85 RLAASDRAILEEAMDILDDEASEDESLR--RKFGT---DRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDELVRRKLDE 159 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHcCC---CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333334444434333333333331 11210 001122333323344444444333322211 233444444
Q ss_pred HHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 190 LSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTML 255 (733)
Q Consensus 190 I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~ 255 (733)
+......|..+.... ....|+......... ....+..|+..+.+|..+|.+|...+.+|+.++.
T Consensus 160 ~~~~l~lL~~~~~~l-~~~~Ps~~~~~~~~~-~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 160 WEDLIQILTGDERDL-ENFVPSSRRPSIPPE-LERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHHHHHHcCCHHHH-HHhCCCCCCCCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554443332 222343211011111 2357999999999999999999999999887654
No 96
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=55.61 E-value=4.3e+02 Score=31.54 Aligned_cols=134 Identities=17% Similarity=0.235 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 48 LEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVD 127 (733)
Q Consensus 48 l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~ 127 (733)
|..|=.+|-..+..-..| +.+|..|....|-+...+ ...-..++...+..|++-.+.+.+-..+|..
T Consensus 51 LA~YIekVR~LEaqN~~L-------~~di~~lr~~~~~~ts~i------k~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 51 LAVYIEKVRFLEAQNRKL-------EHDINLLRGVVGRETSGI------KAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHhhccCCCcch------hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665554443344 344444445555332111 1122334556666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCccCcccccCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 128 VLEQIEMIKSEILGSTVYISSKTVVDDADLS--LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLG 198 (733)
Q Consensus 128 l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS--~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg 198 (733)
+..++..+-..+...... ......++. ...|..++..+..++..+..=..++..++.++..|+..|+
T Consensus 118 l~~e~~elr~~~~~~~k~----~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKE----RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred hHHHHHHHHHHHHHHHHH----HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 666666665544211000 000011111 3445555555555555555555555566666666666553
No 97
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.51 E-value=3.8e+02 Score=30.88 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHH
Q 004728 158 SLRKLEEFHRELHELQKEK---SNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIH 234 (733)
Q Consensus 158 S~e~LeeL~~~L~~Lq~EK---~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~ 234 (733)
+.+.|+.++.++...|+.+ .+++..|..-+..++.|..+|+-.....-. ....+..+ ..+.+-.-...|..++.
T Consensus 337 ~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~--~kl~~a~p-~rgrsSaRe~eleqevk 413 (502)
T KOG0982|consen 337 SSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR--RKLVLANP-VRGRSSAREIELEQEVK 413 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHhhcc-ccCchhHHHHHHHHHHH
Confidence 6688888888887766655 567777888888888888888755432100 00111111 23444455666666666
Q ss_pred HHHH
Q 004728 235 KLRE 238 (733)
Q Consensus 235 ~Lee 238 (733)
+|+.
T Consensus 414 rLrq 417 (502)
T KOG0982|consen 414 RLRQ 417 (502)
T ss_pred Hhcc
Confidence 6643
No 98
>COG5293 Predicted ATPase [General function prediction only]
Probab=53.08 E-value=4.3e+02 Score=30.82 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=36.1
Q ss_pred HHHHHHHHhHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 19 LYELQIIWDEVGE--TDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 19 l~eLq~IWdEIG~--~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
+.+.+.+++++|. |..-.. =..|+..+|++++++- ++-+...|+..++.+..+-..+.
T Consensus 300 pd~i~~~ye~vg~~fpg~Vkk-----~~e~v~~F~r~~~e~R---~~yl~~ei~~i~~dLk~~n~~~~ 359 (591)
T COG5293 300 PDEIQVLYEEVGVLFPGQVKK-----DFEHVIAFNRAITEER---HDYLQEEIAEIEGDLKEVNAELD 359 (591)
T ss_pred hHHHHHHHHHhhhcChHHHHH-----hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899884 433222 1345778999998875 34455566666666655544433
No 99
>PLN03188 kinesin-12 family protein; Provisional
Probab=52.47 E-value=6.7e+02 Score=32.90 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhc
Q 004728 298 YVETEVSRLEELKT--SKMKELVLKKRLELEEICRNT 332 (733)
Q Consensus 298 ~le~EV~RLeeLK~--~~mKelI~k~R~ELeeLWdk~ 332 (733)
..+.|.+|+.-+++ .+| .+.+.+|.+|+. |+.+
T Consensus 1046 e~~l~~er~~w~e~es~wi-slteelr~eles-~r~l 1080 (1320)
T PLN03188 1046 EKKLEQERLRWTEAESKWI-SLAEELRTELDA-SRAL 1080 (1320)
T ss_pred hHHHHHHHHHHHHHhhhhe-echHHHHHHHHH-HHHH
Confidence 44445666554443 344 356788888888 6644
No 100
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.42 E-value=2.1e+02 Score=35.29 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 155 ADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTL 190 (733)
Q Consensus 155 ~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I 190 (733)
..++..+...++..|.+.-++..+-++++..+.+.|
T Consensus 680 ~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 680 IVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368889999999999998888777777776666553
No 101
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=52.35 E-value=4.7 Score=50.15 Aligned_cols=99 Identities=20% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHH
Q 004728 40 LLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKS 119 (733)
Q Consensus 40 l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~ 119 (733)
...+|. -+.-++.++++....+..+......+..|+..|...|...........+....|..+|..++..|++-.+.+.
T Consensus 182 ~K~lE~-qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~ 260 (859)
T PF01576_consen 182 RKQLEA-QLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQ 260 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhh
Confidence 344444 3345667777777778888888888888888888887765544333334445677777777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004728 120 DRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 120 eR~~ef~~l~~qI~~Lc~eL 139 (733)
.-...+..+..++..|-..+
T Consensus 261 ~L~~~l~~le~e~~~L~eql 280 (859)
T PF01576_consen 261 ALEKQLRQLEHELEQLREQL 280 (859)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555
No 102
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.14 E-value=3e+02 Score=33.06 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=66.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004728 98 ESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKS 177 (733)
Q Consensus 98 ~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~ 177 (733)
+.....+..+...++.|..+-.+....+.+++..|..|-++|..... .+.....-..++..+...+..|+.+..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r------~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR------EVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888777888888888888877743211 111223334778888899999999888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004728 178 NRLKQVQDHLNTLSSLCS 195 (733)
Q Consensus 178 ~Rl~kv~~l~~~I~~L~~ 195 (733)
+-...+..|...+..+-.
T Consensus 492 e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 492 EKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777766653
No 103
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=51.01 E-value=3.8e+02 Score=29.67 Aligned_cols=287 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHhCCChH----HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 004728 13 TTCGSLLYELQIIWDEVGETDT----DRDKMLLELEQECLEV--------YRRKVDQANRCRAQLRQAIADSEADL---- 76 (733)
Q Consensus 13 t~c~~~l~eLq~IWdEIG~~e~----eRd~~l~~leqe~l~v--------y~~kVdee~~~r~~L~qsIa~~~~El---- 76 (733)
..+..+=..|..+-++++.|.. +....=..+-++|-+| +...+.+....+.+....|.++..-|
T Consensus 24 ~~l~~~~~~l~~~L~slnLP~sl~~l~~~~lP~sl~~~~~~i~~~gg~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~ 103 (339)
T cd09235 24 GKLREATQLLNGVLASLNLPAAIEDVSGDTVPQSLLEKSRTVIEKGGIQTIDQLIKELPELLQRNREILDEALRMLDEEE 103 (339)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred ---HHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccC
Q 004728 77 ---AAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVD 153 (733)
Q Consensus 77 ---~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd 153 (733)
..+....|..=...+ ...-..+|..++..++..|+.-..-=..-...|.....-|.-||.-...-..+.+......
T Consensus 104 ~ed~~~R~k~g~~Wtr~p-S~~~~~~l~~~~~kyr~~L~~A~~sD~~v~~k~~~~~~~l~lLs~~~~~l~~~lPss~~~~ 182 (339)
T cd09235 104 ASDNQLRAQFKERWTRTP-SNKLTKPLRAEGSKYRTILDNAVQADKIVREKYESHREGIELLSKPEEELANAIPSASPAK 182 (339)
T ss_pred hHHHHHHHHhCCcCCCCC-hHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCC
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHH
Q 004728 154 DADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAI 233 (733)
Q Consensus 154 e~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l 233 (733)
.. -....+..|+..+.++...+.+|..-..+++..=.++...|=...... +.+....-.-..|.+..
T Consensus 183 ~~-~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~~dDI~~~ll~~~~~~------------~~~~~e~l~~~eL~k~f 249 (339)
T cd09235 183 TL-QGSEAVQELRQLMEQVETIKAEREVIESELKSATFDMKSKFLSALAQD------------GAINEEAISVEELDRVY 249 (339)
T ss_pred Cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhc------------CCccHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHH
Q 004728 234 HKLREVKIQRMQKLQDLATTMLELWNLM------DTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLE 307 (733)
Q Consensus 234 ~~LeeeK~~R~~kl~eL~~~I~eLW~~L------~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLe 307 (733)
+.+...-.+...+=..+..+|...|..+ +....+|+.+..... ...+.+..-+.-|+
T Consensus 250 ~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~-----------------~Ay~~y~el~~nl~ 312 (339)
T cd09235 250 GPLQKQVQESLSRQESLLANIQVAHQEFSKEKQSNSGANEREEVLKDLA-----------------AAYDAFMELTANLK 312 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH-----------------HHHHHHHHHHHhHH
Q ss_pred HHH--HHhHHHHHHHHHHHHHHHHH
Q 004728 308 ELK--TSKMKELVLKKRLELEEICR 330 (733)
Q Consensus 308 eLK--~~~mKelI~k~R~ELeeLWd 330 (733)
+=. -.-|.+++.+.+.++.+++.
T Consensus 313 eG~kFY~dL~~~~~~~~~~~~~fv~ 337 (339)
T cd09235 313 EGTKFYNDLTEILVKFQNKCSDFVF 337 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
No 104
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=50.93 E-value=1.5e+02 Score=29.37 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 50 VYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 50 vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
..|.+||..+..-.-+-+.....+.|......++.
T Consensus 88 ~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 88 MVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444444
No 105
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.39 E-value=2.4e+02 Score=34.55 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=70.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh-CCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 50 VYRRKVDQAN-RCRAQLRQAIADSEADLAAICSAM-GERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVD 127 (733)
Q Consensus 50 vy~~kVdee~-~~r~~L~qsIa~~~~El~~L~seL-ge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~ 127 (733)
.....|+... ..|..|.+.|..-.++|..|..++ |.-.....+-.-...-+.-+|+.+-.++..|..-.++++-+|..
T Consensus 765 ~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~a 844 (1104)
T COG4913 765 QHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLA 844 (1104)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHH
Confidence 3445566655 567778888888877777766553 21100100000012335555677777777777777777766643
Q ss_pred HHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 128 VLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNT 189 (733)
Q Consensus 128 l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~ 189 (733)
..+.|..+. |...+..|-.+|..-..+..+|++-++.-...
T Consensus 845 ---rF~~llN~~------------------S~~~v~q~~~~L~~er~~IeERIe~IN~SL~~ 885 (1104)
T COG4913 845 ---RFQELLNRS------------------SDDGVTQLLSHLDHERALIEERIEAINDSLRR 885 (1104)
T ss_pred ---HHHHHhhhc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223333222 33567788888888888888998877765543
No 106
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=49.72 E-value=1.1e+02 Score=26.37 Aligned_cols=64 Identities=31% Similarity=0.327 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 12 ETTCGSLLYELQIIWDEVGETDTDRDKMLLELEQECLE-VYRRKVDQANRCRAQLRQAIADSEADLA 77 (733)
Q Consensus 12 ~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~-vy~~kVdee~~~r~~L~qsIa~~~~El~ 77 (733)
.+++-++|.-||.=||.|-.....-.+.+.+..+|.-. +|+. |-+...-++++++-.+++..++
T Consensus 3 ~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~--DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQH--DAACRVIARLLKERDEAREALA 67 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHhHHHHHHHHH
Confidence 47889999999999999988777766677777666544 4442 3333334444444444444443
No 107
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.06 E-value=2.9e+02 Score=28.69 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 161 KLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLC 194 (733)
Q Consensus 161 ~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~ 194 (733)
+..+|+.+++.++++...=..+...+...+..-|
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~w 173 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443444444444444333
No 108
>PRK10869 recombination and repair protein; Provisional
Probab=48.41 E-value=5.4e+02 Score=30.63 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 120 DRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGI 199 (733)
Q Consensus 120 eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~ 199 (733)
.|+.....+.+-+..+...|.+... .. ....|......+..+ ..++.++..+.+....+.....++..
T Consensus 215 ~~L~n~e~i~~~~~~~~~~L~~~~~----------~~-~~~~l~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~ 282 (553)
T PRK10869 215 KRLANSGQLLTTSQNALQLLADGEE----------VN-ILSQLYSAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASD 282 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc----------cc-HHHHHHHHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665632100 00 134455555555555 33444444444444443333333322
Q ss_pred CccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 004728 200 DFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKI 241 (733)
Q Consensus 200 d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~ 241 (733)
+..... +...+.+..|+.++..+..|+..|.
T Consensus 283 ~l~~~~-----------~~~~~dp~~l~~ie~Rl~~l~~L~r 313 (553)
T PRK10869 283 ELRHYL-----------DRLDLDPNRLAELEQRLSKQISLAR 313 (553)
T ss_pred HHHHHH-----------hhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 211110 1223456667777776666655554
No 109
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=48.15 E-value=3.3e+02 Score=28.08 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 53 RKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQI 132 (733)
Q Consensus 53 ~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI 132 (733)
+.|+-+...-++|...|.++..++..+-.++.. ..++.++|..++.-+-.+...+..-+.+-..+..+.
T Consensus 29 ~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~-----------aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 29 RSVETAEEGNAQLAEEITDLRKQLKSLQQALQK-----------AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556666666666666666544442 346888888888888888888888888888888888
Q ss_pred HHHHHHhc
Q 004728 133 EMIKSEIL 140 (733)
Q Consensus 133 ~~Lc~eL~ 140 (733)
+.|..+|+
T Consensus 98 q~L~~~i~ 105 (193)
T PF14662_consen 98 QSLVAEIE 105 (193)
T ss_pred HHHHHHHH
Confidence 88888774
No 110
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.77 E-value=3.2e+02 Score=27.84 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004728 122 KKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 122 ~~ef~~l~~qI~~Lc~eL 139 (733)
..++..++.+.+.|.+.|
T Consensus 169 ~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 169 QEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555554
No 111
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=46.87 E-value=4.9e+02 Score=29.72 Aligned_cols=324 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc--
Q 004728 13 TTCGSLLYELQIIWDEVGETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHI-- 90 (733)
Q Consensus 13 t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~-- 90 (733)
++....|.+...+=-.+|+=-..-...+.-|...+..-....-+-....-..+...+....++|......|...+++.
T Consensus 26 ~~ar~~l~~~~~~~~k~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~ 105 (412)
T PF04108_consen 26 TSARQSLEESVPLSAKTGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPPFF 105 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCccc
Q ss_pred ---cc---------cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCCccCcccccC
Q 004728 91 ---RQ---------SDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIK-----SEILGSTVYISSKTVVD 153 (733)
Q Consensus 91 ---~~---------~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc-----~eL~g~~~~~~~~~~vd 153 (733)
.. .+.+...|+.-++.....+...+..-+.=+..|......+.+.. ........+........
T Consensus 106 ~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 185 (412)
T PF04108_consen 106 RPPGEEPKTLYDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSP 185 (412)
T ss_pred cCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCC
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccccccccccccccC----------------
Q 004728 154 DADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVL--GIDFKHTVSDIHPSFCEN---------------- 215 (733)
Q Consensus 154 e~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~L--g~d~~~~i~ev~psl~e~---------------- 215 (733)
....|..-+..+-..+..|..+-.+=++-+..+=.+|....... +-.......+.-.+|..+
T Consensus 186 ~~~~s~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~ 265 (412)
T PF04108_consen 186 SSSSSNPLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLD 265 (412)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHH
Q ss_pred -------------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhHhhhhcc
Q 004728 216 -------------EGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVE----EQQAFQSVTCNI 278 (733)
Q Consensus 216 -------------~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~e----Er~~F~~~~~~i 278 (733)
.............+...+..|..-+. ++.........+...|.....+.. +-..+...|.++
T Consensus 266 ~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F 344 (412)
T PF04108_consen 266 EMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGE-RLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGF 344 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHH
Q 004728 279 AASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTAN 358 (733)
Q Consensus 279 ~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~ee 358 (733)
. .....+=.||.|=... ..+|+.++.....+|..+.+ +++.+...+.. +.|+.-|++
T Consensus 345 ~--------------~aY~~LL~Ev~RRr~~-~~k~~~i~~~~~eeL~~l~e------eE~~~Re~F~~--e~GdyLP~d 401 (412)
T PF04108_consen 345 L--------------SAYDSLLLEVERRRAV-RDKMKKIIREANEELDKLRE------EEQRRREAFLK--EYGDYLPED 401 (412)
T ss_pred H--------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HccCcCChh
Q ss_pred HH
Q 004728 359 VL 360 (733)
Q Consensus 359 LL 360 (733)
++
T Consensus 402 iw 403 (412)
T PF04108_consen 402 IW 403 (412)
T ss_pred hC
No 112
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.64 E-value=5.1e+02 Score=29.88 Aligned_cols=140 Identities=11% Similarity=0.159 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 109 PQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLN 188 (733)
Q Consensus 109 ~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~ 188 (733)
.++..+..+..+-..++..++.++..+-..+.+.++........ ....-..+|.+++.++..+...+....-+|..+..
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~-~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~ 282 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSV-ANSELDGRIEALEKQLDALRLRYTDKHPDVIATKR 282 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCccccc-CCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 34444444444444455667777777777675544321110011 11223577999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 189 TLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLEL 257 (733)
Q Consensus 189 ~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eL 257 (733)
+|..+-..+.-....... ........+..+..|...+..++........++..+...+..+
T Consensus 283 qi~~l~~~l~~~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 283 EIAQLEEQKEEEGSAKNG--------GPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHHHHHHHhhcccccc--------CcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888776432211110 0011122334455566666666555555555555566665555
No 113
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=46.40 E-value=5.2e+02 Score=29.85 Aligned_cols=138 Identities=19% Similarity=0.321 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQF----VDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKE 175 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef----~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~E 175 (733)
-..++.+++..|-.||.-+..-...+ ..+..++..+-. ++-.. ..+ .=+.+++.-+++
T Consensus 153 ~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~-~~~~~----------~~~-------s~R~y~e~~k~k 214 (426)
T smart00806 153 QRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS-SSLSA----------SGS-------SNRAYVESSKKK 214 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcc----------CCC-------cchHHHHHhHHH
Confidence 34667788888887777766654433 334444444432 11000 011 224455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 176 KSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTML 255 (733)
Q Consensus 176 K~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~ 255 (733)
.+..-..+..-+..++.+.+.|.-|.... .+.| +...|+...+.+..+.. .+++++++.....
T Consensus 215 L~~~Sd~lltkVDDLQD~vE~LRkDV~~R--gVRp-----------~~~qLe~v~kdi~~a~k----eL~~m~~~i~~eK 277 (426)
T smart00806 215 LSEDSDSLLTKVDDLQDIIEALRKDVAQR--GVRP-----------SKKQLETVQKELETARK----ELKKMEEYIDIEK 277 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCC-----------CHHHHHHHHHHHHHHHH----HHHHHHHHHhhcC
Confidence 66677777777777777777776554322 2333 56677777777776643 4555666666666
Q ss_pred HHHHh-----cCCCHHHHHHhH
Q 004728 256 ELWNL-----MDTPVEEQQAFQ 272 (733)
Q Consensus 256 eLW~~-----L~ip~eEr~~F~ 272 (733)
..|.+ |+.=.+||+-|.
T Consensus 278 P~WkKiWE~EL~~VcEEqqfL~ 299 (426)
T smart00806 278 PIWKKIWEAELDKVCEEQQFLT 299 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 66643 555566776443
No 114
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.39 E-value=3.9e+02 Score=28.38 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=43.2
Q ss_pred HHHhhhHHHHHHHHHHHHhHHHHHHHHHhcCchhhccCCCCccchHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH
Q 004728 373 EAFSRKEILERVEKWLGACEEECWLEEYNRDDNRYNAGKGAHLTLKRAEKARSLVNK-LPGMVEALASKTIAWEKE 447 (733)
Q Consensus 373 ~~~srk~IlelVekw~~l~eEe~~LEe~skDpnRy~nrrGah~~LlreEK~Rk~v~K-LPklee~L~~kl~~WE~e 447 (733)
+...|+-|=..++++. .|+.+.-.-.|++.. =++.-.+-..+++|.-+.. |-..++.|..++..||.+
T Consensus 76 L~e~Rk~IE~~MErFK-~vEkesKtKafSkeG------L~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E 144 (233)
T PF04065_consen 76 LLENRKLIEEQMERFK-VVEKESKTKAFSKEG------LMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAE 144 (233)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhcccccchhh------hhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777774 344444444444432 1111123457788885554 999999999999999998
No 115
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=46.26 E-value=7.1e+02 Score=31.38 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 62 RAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEM 134 (733)
Q Consensus 62 r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~ 134 (733)
.++|...++.+.+.-..+-.+.+. +...+.....++.+++.+...+.+|+..+.+-+.++.+++.|...
T Consensus 388 ~eqLr~elaql~a~r~q~eka~~~----~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~ 456 (980)
T KOG0980|consen 388 QEQLRNELAQLLASRTQLEKAQVL----VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLES 456 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555543 112334456778888888888888888888888888887776544
No 116
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.21 E-value=7.3e+02 Score=31.48 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHH
Q 004728 294 DFISYVETEVSRLEELKT------SKMKELVLKKRLELEEI 328 (733)
Q Consensus 294 ~~Ie~le~EV~RLeeLK~------~~mKelI~k~R~ELeeL 328 (733)
+-+..++.+|..|+.+.. +.=+++..++|.||+.+
T Consensus 462 ekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 462 EKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666655542 22334555666666554
No 117
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.63 E-value=5e+02 Score=31.48 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH-----HHHHHHhHHHHHHHHH
Q 004728 360 LEQIELQIAKVKEEAFSRKEILERV-----EKWLGACEEECWLEEY 400 (733)
Q Consensus 360 Le~~E~EI~rLKe~~~srk~IlelV-----ekw~~l~eEe~~LEe~ 400 (733)
+..++.-|+++.+.|..+.+-+++| ++|-.+|.+...+|++
T Consensus 141 ~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~ 186 (611)
T KOG2398|consen 141 LAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEES 186 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999887 6788888877777765
No 118
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=44.05 E-value=2.9e+02 Score=26.28 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004728 160 RKLEEFHRELHELQKEK 176 (733)
Q Consensus 160 e~LeeL~~~L~~Lq~EK 176 (733)
++.++|+.-+.+|+.-+
T Consensus 96 E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 119
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.88 E-value=42 Score=34.11 Aligned_cols=83 Identities=19% Similarity=0.364 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004728 99 SLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSN 178 (733)
Q Consensus 99 tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~ 178 (733)
++...+..++..|.++.+.+.+...++..+..++..+-..+.. -...|..|+..+..|+.+...
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~----------------~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSE----------------KERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777777777777666666666666655544411 136788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004728 179 RLKQVQDHLNTLSSLCSVL 197 (733)
Q Consensus 179 Rl~kv~~l~~~I~~L~~~L 197 (733)
+...+.+....+..+-+++
T Consensus 135 l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888777776655544
No 120
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.95 E-value=8.3e+02 Score=31.25 Aligned_cols=136 Identities=16% Similarity=0.180 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHH
Q 004728 226 IERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSR 305 (733)
Q Consensus 226 L~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~R 305 (733)
|..|....++++....+-+++...|--++..|-+..--..+.|..-.++...+. +-|..-+.|+..
T Consensus 281 l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~--------------~ki~e~~~EL~~ 346 (1200)
T KOG0964|consen 281 LTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVK--------------DKIEEKKDELSK 346 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 334444444444444444444444555555555555554444444433322221 223333333333
Q ss_pred HHHHHHH------hHHHHHHHHHHHHHHHHHhc-----CCCchhhhhHHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 004728 306 LEELKTS------KMKELVLKKRLELEEICRNT-----HMVPENDHSIEY-AIEAIESGAMDTANVLEQIELQIAKVKEE 373 (733)
Q Consensus 306 LeeLK~~------~mKelI~k~R~ELeeLWdk~-----~~s~eeR~aF~~-~~~~i~sg~~~~eeLLe~~E~EI~rLKe~ 373 (733)
.+-.+.+ ..+.=|..++.+..+|+.+- |-+-++|..|.+ -+.-+..+-.++-+.-+.+..+|..++..
T Consensus 347 I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~ 426 (1200)
T KOG0964|consen 347 IEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESE 426 (1200)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 2222211 22222334444555555443 334567776652 11222223234445555555666665555
Q ss_pred HH
Q 004728 374 AF 375 (733)
Q Consensus 374 ~~ 375 (733)
+.
T Consensus 427 l~ 428 (1200)
T KOG0964|consen 427 LK 428 (1200)
T ss_pred HH
Confidence 44
No 121
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.48 E-value=3.6e+02 Score=26.84 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 107 ILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDH 186 (733)
Q Consensus 107 i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l 186 (733)
-+..++.+|-.......++..+..++...- +|+ .+++.-.++.|+.....|.+..++|-..+..+
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke-~lg--------------e~L~~iDFeqLkien~~l~~kIeERn~eL~~L 68 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKE-ELG--------------EGLHLIDFEQLKIENQQLNEKIEERNKELLKL 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc--------------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777776665 453 23566778899999999999999999999999
Q ss_pred HHHHHHHHH
Q 004728 187 LNTLSSLCS 195 (733)
Q Consensus 187 ~~~I~~L~~ 195 (733)
+..+..-..
T Consensus 69 k~~~~~~v~ 77 (177)
T PF13870_consen 69 KKKIGKTVQ 77 (177)
T ss_pred HHHHHHHHH
Confidence 988654443
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.47 E-value=4.5e+02 Score=28.02 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 101 KEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 101 keqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
..+++++...+..+..+...-..++.++...+..|..++
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777777776666667777777777766666
No 123
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=42.23 E-value=5.3e+02 Score=28.72 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CC
Q 004728 69 IADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEIL------GS 142 (733)
Q Consensus 69 Ia~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~------g~ 142 (733)
+..=..+...+....|.. ........-..+|+.++..++..|+.-..-=..-...|......|.-||.-.. +.
T Consensus 96 L~~E~~ed~~~R~k~g~~-Wtr~~S~~~~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~ 174 (356)
T cd09237 96 LDEEMKEIEKMRKKILAK-WTQSPSSSLTASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGF 174 (356)
T ss_pred HHHHHHHHHHHHHHHhcc-cccccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcC
Confidence 344445556677777762 22111223346799999999999987655544445556666666666653110 00
Q ss_pred CCccCcccccCCCCC-----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 143 TVYISSKTVVDDADL-----S-LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLS 191 (733)
Q Consensus 143 ~~~~~~~~~vde~dL-----S-~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~ 191 (733)
|......+.+.+.|. + ...+..|+..+.+|...+.+|...+.+++..++
T Consensus 175 p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~ 229 (356)
T cd09237 175 SSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIH 229 (356)
T ss_pred CCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110000011111111 1 357889999999999999999999999988764
No 124
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=41.94 E-value=2.6e+02 Score=27.01 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccc--ccccccCcCCCCCCHHHHHHH
Q 004728 156 DLSLRKLEEFHRELH----ELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDI--HPSFCENEGSMSISNDAIERL 229 (733)
Q Consensus 156 dLS~e~LeeL~~~L~----~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev--~psl~e~~~s~~LS~~tL~~L 229 (733)
|+|-++|+.|+.+.. -.|.|......|+..+.++... .....+....-.++ +|++..=-.-.+|+.+.|..+
T Consensus 9 disa~~L~glRtqc~~s~eltqqeIr~lE~KLvK~fSkQL~--~K~k~~~~~~~~~l~~yP~l~~WL~vVgl~~~~i~~i 86 (129)
T PF13543_consen 9 DISAEQLEGLRTQCATSSELTQQEIRTLEGKLVKYFSKQLQ--CKAKVAERERAAELNSYPSLRQWLRVVGLRPESIQAI 86 (129)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCccCchhcccCCcHHHHhhhcCCCHHHHHHH
Confidence 445566666666552 2444555555566666555222 22222222111111 233322112578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhh
Q 004728 230 TIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVT 275 (733)
Q Consensus 230 ~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~ 275 (733)
-..+..|.....-..++ +..+.+.++...||+..|....
T Consensus 87 ~~~~~tLe~Llemsd~e-------l~~~l~~~g~~~EE~rRL~~Al 125 (129)
T PF13543_consen 87 LSKVLTLEALLEMSDEE-------LKEILNRCGAREEECRRLCRAL 125 (129)
T ss_pred HHhhcCHHHHHhCCHHH-------HHHHHHHhCCCHHHHHHHHHHH
Confidence 76777776665544444 4445555788888888776643
No 125
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=41.66 E-value=5.6e+02 Score=28.89 Aligned_cols=55 Identities=25% Similarity=0.299 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHH
Q 004728 178 NRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLRE 238 (733)
Q Consensus 178 ~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~Lee 238 (733)
.-+.++.++-..|..|=..||++... .+.++.+..+.+|. .+|+.|...+.-|..
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~-----~~~l~~~~~~~~l~-~~l~~L~~~lslL~~ 260 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDK-----MSSLDSDTSSSPLL-PALNELERQLSLLDP 260 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccc-----cccccccCCcchHH-HHHHHHHHHHHhcCH
Confidence 34667888888888888899985332 12343322233332 356777777666643
No 126
>PRK03918 chromosome segregation protein; Provisional
Probab=41.03 E-value=8e+02 Score=30.48 Aligned_cols=31 Identities=3% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 105 RRILPQVEEMRKRKSDRKKQFVDVLEQIEMI 135 (733)
Q Consensus 105 ~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~L 135 (733)
+.+...++.++.+...-..++..+...+..+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655555555555555555544
No 127
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=40.82 E-value=53 Score=26.40 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHH
Q 004728 361 EQIELQIAKVKEEAF-SRKEILERVE 385 (733)
Q Consensus 361 e~~E~EI~rLKe~~~-srk~IlelVe 385 (733)
..||.||..+...|. .|+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 478999999988886 6799999885
No 128
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.73 E-value=4.1e+02 Score=27.01 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 48 LEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGE 85 (733)
Q Consensus 48 l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge 85 (733)
+.+++.++.........|.+.+....+||..|-+.|..
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 45556666666666778899999999999999988875
No 129
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=40.13 E-value=5.5e+02 Score=28.32 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 218 SMSISNDAIERLTIA--------IHKLREVKIQRMQKLQDLATTMLE 256 (733)
Q Consensus 218 s~~LS~~tL~~L~~~--------l~~LeeeK~~R~~kl~eL~~~I~e 256 (733)
...+|.++...|... +.+|-.+|..-+.+|..+..+|.+
T Consensus 198 ~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 198 RALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred ccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777766655 777778887777777777766643
No 130
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.98 E-value=5.6e+02 Score=30.08 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 47 CLEVYRRKVDQANRCRAQLRQAIADSEADLAAIC 80 (733)
Q Consensus 47 ~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~ 80 (733)
.++.....|.+.++.-+.-.-.|+.++..+..|.
T Consensus 356 ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls 389 (508)
T KOG3091|consen 356 RINAIGERVTELQKHHADAVAKIEEAKNRHVELS 389 (508)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344445666666555555666766666665553
No 131
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=39.49 E-value=4.6e+02 Score=27.24 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=48.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004728 164 EFHRELHELQ-KEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQ 242 (733)
Q Consensus 164 eL~~~L~~Lq-~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~ 242 (733)
.+...+..+. .++..|.+.+.. -+..+|..+|+++......+.+.+.. .+.++.. +++.+...+..+......
T Consensus 93 ~I~~~ik~~Ee~~k~~k~~~i~~---~~~~~~~~~~v~~~~fe~~~~~~wln--ks~s~kk-~~eei~~~i~~~~~~~~~ 166 (215)
T PF07083_consen 93 KIDEQIKEFEEKEKEEKREKIKE---YFEEMAEEYGVDPEPFERIIKPKWLN--KSYSLKK-IEEEIDDQIDKIKQDLEE 166 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCChHHHhhhcchHHhh--cCCcHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333444433 234455555544 45568999998765432112222221 1334444 778888888777555554
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHH
Q 004728 243 RMQKLQDLATTMLELWNLMDTPVE 266 (733)
Q Consensus 243 R~~kl~eL~~~I~eLW~~L~ip~e 266 (733)
.....+ .+.......++|..
T Consensus 167 ~~~~~~----~i~~~A~~~~l~~~ 186 (215)
T PF07083_consen 167 IKAAKQ----AIEEKAEEYGLPAD 186 (215)
T ss_pred HHHHHH----HHHHHHHHcCCCcH
Confidence 444444 34444444777643
No 132
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=38.98 E-value=4.2e+02 Score=27.35 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHH
Q 004728 39 MLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRK 118 (733)
Q Consensus 39 ~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K 118 (733)
.|..+..+|...|++|..+.-..-..=.+.|.++..|-..=..-+.-........++...-|+++|..-..+++.+.++.
T Consensus 85 ~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~ 164 (192)
T PF09727_consen 85 ELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEH 164 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888887774433333333344444433222222211110000011222334555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004728 119 SDRKKQFVDVLEQIEMIK 136 (733)
Q Consensus 119 ~eR~~ef~~l~~qI~~Lc 136 (733)
......+.+=..+...+.
T Consensus 165 ~K~~~~l~eE~~k~K~~~ 182 (192)
T PF09727_consen 165 KKLVSQLEEERTKLKSFV 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555444
No 133
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.94 E-value=9.7e+02 Score=30.89 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 122 KKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVL 197 (733)
Q Consensus 122 ~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~L 197 (733)
+++..++.+++..|-++++=.--|. ...+..--.+.+...+..+.+|+++.+.+..++.++...+...=..+
T Consensus 254 ~~~~e~~~~~l~~Lk~k~~W~~V~~----~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i 325 (1074)
T KOG0250|consen 254 LEQLEDLKENLEQLKAKMAWAWVNE----VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKI 325 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4455666666666666553111010 00011111234445566666666666667766666665444443333
No 134
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.85 E-value=7.4e+02 Score=29.38 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 105 RRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGST-VYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQV 183 (733)
Q Consensus 105 ~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~-~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (733)
..+..+|+...++|.....++..+...|..|-+||.... .| .++|..+-.||..|+.......++|
T Consensus 444 ~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY-------------E~QLs~MSEHLasmNeqL~~Q~eeI 510 (518)
T PF10212_consen 444 RALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY-------------EEQLSMMSEHLASMNEQLAKQREEI 510 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666777777888889999999999995322 13 3788999999999999888888888
Q ss_pred HHHH
Q 004728 184 QDHL 187 (733)
Q Consensus 184 ~~l~ 187 (733)
..++
T Consensus 511 ~~LK 514 (518)
T PF10212_consen 511 QTLK 514 (518)
T ss_pred HHHh
Confidence 7776
No 135
>PF13514 AAA_27: AAA domain
Probab=37.27 E-value=1e+03 Score=30.74 Aligned_cols=212 Identities=13% Similarity=0.154 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 50 VYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVL 129 (733)
Q Consensus 50 vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~ 129 (733)
..+..+++.....+.+...++.+......++..+|. |.. | .....+......+....+.+.....+ +..+.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~-p~~---p-~~~~~Wl~~~~~~~~~~~~~~~~~~~----~~~~~ 631 (1111)
T PF13514_consen 561 EARARLARAQARLAAAEAALAALEAAWAALWAAAGL-PLS---P-AEMRDWLARREAALEAAEELRAARAE----LEALR 631 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC---h-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 344455555555566666677777777778888884 322 2 33555666666666666665554443 44444
Q ss_pred HHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccc
Q 004728 130 EQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIH 209 (733)
Q Consensus 130 ~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~ 209 (733)
.....++..|...... ++. ...|..+-.....+..+......+...+.
T Consensus 632 ~~~~~~~~~L~~~l~~------~~~----~~~l~~~l~~a~~~~~~~~~~~~~~~~l~---------------------- 679 (1111)
T PF13514_consen 632 ARRAAARAALAAALAA------LGP----AEELAALLEEAEALLEEWEQAAARREQLE---------------------- 679 (1111)
T ss_pred HHHHHHHHHHHHHHHh------CCc----cccHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 4444444444221100 000 11122221111111111111111111111
Q ss_pred cccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhHhhhhccccccccc
Q 004728 210 PSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVE----EQQAFQSVTCNIAASEHEI 285 (733)
Q Consensus 210 psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~e----Er~~F~~~~~~i~aSe~e~ 285 (733)
..+..+...+..++.....-...+..+......++..+|.|.. .-..+...+
T Consensus 680 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l---------- 735 (1111)
T PF13514_consen 680 --------------EELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELL---------- 735 (1111)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH----------
Confidence 1233344444555555555555666677777777777776643 222222211
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC
Q 004728 286 TEPNTLSVDFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMV 335 (733)
Q Consensus 286 t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s 335 (733)
+.+.....++..+.. +.+.|..-+.....++..|+..+..+
T Consensus 736 --------~~l~~~~~~~~~~~~-ri~~~~~~~~~f~~~~~~L~~~l~~~ 776 (1111)
T PF13514_consen 736 --------EELREALAEIRELRR-RIEQMEADLAAFEEQVAALAERLGPD 776 (1111)
T ss_pred --------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 233344445555544 34456666777888899999988764
No 136
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=37.19 E-value=8e+02 Score=29.39 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=45.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHHHHHHhcCchhhccCCCCccchHHHHHHHHHh-hhhhHHHHHHHHHHHHHHH
Q 004728 371 KEEAFSRKEILERVEKWLGACEEECWLEEYNRDDNRYNAGKGAHLTLKRAEKARSLV-NKLPGMVEALASKTIAWEK 446 (733)
Q Consensus 371 Ke~~~srk~IlelVekw~~l~eEe~~LEe~skDpnRy~nrrGah~~LlreEK~Rk~v-~KLPklee~L~~kl~~WE~ 446 (733)
..+..-|+=|=..+|+++ +|+.+.--..+++. |=|..-.|--.||++.-+ .=|--++++|-.++..+|.
T Consensus 74 ~~L~d~RrlIE~~MErfK-~vEke~KtKa~Ske------gL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 74 DSLLDNRRLIEQRMERFK-AVEKEMKTKAFSKE------GLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhccccchh------hccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666677764 34443333333332 344445578888888844 5599999999999999998
No 137
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.17 E-value=7.5e+02 Score=29.03 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHhcCC
Q 004728 295 FISYVETEVSRLEELKTSKM---KELVLKKRLELEEICRNTHM 334 (733)
Q Consensus 295 ~Ie~le~EV~RLeeLK~~~m---KelI~k~R~ELeeLWdk~~~ 334 (733)
-++.+|.|+..|.-+-...| ..+|++.+-++.++-..|.+
T Consensus 534 E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~ 576 (622)
T COG5185 534 EIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNR 576 (622)
T ss_pred HHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHH
Confidence 46677777777765543332 35566667777776665543
No 138
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.36 E-value=1.6e+02 Score=23.14 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 42 ELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 42 ~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
|+|..| ++++.-.+.....-+.|.+.-+.+.+++..|-..|+
T Consensus 2 QlE~Dy-~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDY-DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466666 677777777777778888888889999988877665
No 139
>PRK03918 chromosome segregation protein; Provisional
Probab=36.01 E-value=9.4e+02 Score=29.86 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=15.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhh
Q 004728 355 DTANVLEQIELQIAKVKEEAFSR 377 (733)
Q Consensus 355 ~~eeLLe~~E~EI~rLKe~~~sr 377 (733)
+..+++..++.++..+...+..-
T Consensus 449 ~~~el~~~~~~ei~~l~~~~~~l 471 (880)
T PRK03918 449 HRKELLEEYTAELKRIEKELKEI 471 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777776666543
No 140
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=35.64 E-value=5.2e+02 Score=26.80 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccCc-ccccCCCCCCHH-HHHHHHHHHHHHHHHHHHH
Q 004728 104 LRRILPQVEEMRK-RKSDRKKQFVDVLEQIEMIKSEILGSTV-YISS-KTVVDDADLSLR-KLEEFHRELHELQKEKSNR 179 (733)
Q Consensus 104 L~~i~~~LEeLrk-~K~eR~~ef~~l~~qI~~Lc~eL~g~~~-~~~~-~~~vde~dLS~e-~LeeL~~~L~~Lq~EK~~R 179 (733)
.+.|..++..+.. +|..|...+ +.-+..+|...+..+. |... .+.......|+. -++++...+... ...
T Consensus 91 ~~~I~~~ik~~Ee~~k~~k~~~i---~~~~~~~~~~~~v~~~~fe~~~~~~wlnks~s~kk~~eei~~~i~~~----~~~ 163 (215)
T PF07083_consen 91 SDKIDEQIKEFEEKEKEEKREKI---KEYFEEMAEEYGVDPEPFERIIKPKWLNKSYSLKKIEEEIDDQIDKI----KQD 163 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCChHHHhhhcchHHhhcCCcHHHHHHHHHHHHHHH----HHH
Confidence 3445555554433 344554444 4445668877753322 2210 011112344543 333455444444 555
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccc
Q 004728 180 LKQVQDHLNTLSSLCSVLGIDFKHTV 205 (733)
Q Consensus 180 l~kv~~l~~~I~~L~~~Lg~d~~~~i 205 (733)
++.+......|...|...|+++...+
T Consensus 164 ~~~~~~~~~~i~~~A~~~~l~~~~yi 189 (215)
T PF07083_consen 164 LEEIKAAKQAIEEKAEEYGLPADPYI 189 (215)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 66677777888888999998876554
No 141
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=35.34 E-value=5.2e+02 Score=26.69 Aligned_cols=95 Identities=11% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHhcCchhhc
Q 004728 329 CRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEEAFSRKEILERVEKWLGACEEECWLEEYNRDDNRYN 408 (733)
Q Consensus 329 Wdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~~~srk~IlelVekw~~l~eEe~~LEe~skDpnRy~ 408 (733)
|+..- ..-.|.+|..+-. .+.+.++.+.-.+|. |..+.......++.+..+.. +-=-.|...|.+|+
T Consensus 65 w~~~~-~~y~r~~FgrYGa---~SgV~p~~lfpS~e~-~rE~~~~~~e~~e~l~km~E--------slRi~~~~e~~k~~ 131 (225)
T KOG4848|consen 65 WDSER-RAYRRERFGRYGA---KSGVPPEELFPSAEE-IREFNNAKKEYKELLKKMRE--------SLRILYTKEPEKFT 131 (225)
T ss_pred hhhcc-HHHHHHHHHhhcc---ccCCChhhhCCCHHH-HHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHH
Confidence 54433 3335677775432 234677777777763 22222222222233322211 11112445566665
Q ss_pred cCCCCccchHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 004728 409 AGKGAHLTLKRAEKARSLVNKLPGMVEALASKTIAWE 445 (733)
Q Consensus 409 nrrGah~~LlreEK~Rk~v~KLPklee~L~~kl~~WE 445 (733)
. |++-.-+...|+|.+..++.+++..=|
T Consensus 132 ~---------Re~~iak~m~K~pq~~a~~~a~~~k~e 159 (225)
T KOG4848|consen 132 F---------REAEIAKNMKKYPQTLAKYEASLVKQE 159 (225)
T ss_pred H---------HHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 2 455555667778888888777776433
No 142
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.30 E-value=1.3e+03 Score=31.21 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004728 250 LATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELVLKKRLELEEIC 329 (733)
Q Consensus 250 L~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLW 329 (733)
-......|+...+.+.++=+.....+. ..++..+.++.+|+..... ++.-+...+.....+.
T Consensus 422 ~Le~~~~~~~~~~~SdEeLe~~LenF~-----------------aklee~e~qL~elE~kL~~-lea~leql~~~~~~l~ 483 (1486)
T PRK04863 422 ALERAKQLCGLPDLTADNAEDWLEEFQ-----------------AKEQEATEELLSLEQKLSV-AQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 445667788888888887554444332 4556666666666654443 4444466667777766
Q ss_pred HhcCC
Q 004728 330 RNTHM 334 (733)
Q Consensus 330 dk~~~ 334 (733)
....-
T Consensus 484 ~~~Gk 488 (1486)
T PRK04863 484 KIAGE 488 (1486)
T ss_pred HHcCC
Confidence 66653
No 143
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=35.20 E-value=1e+03 Score=30.07 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=62.4
Q ss_pred HHHHHHHhHhCCC-hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccc
Q 004728 20 YELQIIWDEVGET-DTDRDKMLL--ELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQT 96 (733)
Q Consensus 20 ~eLq~IWdEIG~~-e~eRd~~l~--~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~ 96 (733)
.++....|++|++ +..++..+. ..-+.|. -...++.+.+...++|.+..+.....+..|...+ +.++... .
T Consensus 592 se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~-~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~-e~~~~~l----s 665 (984)
T COG4717 592 SEWEEALDELGLSRELSPEQQLDILSTMKDLK-KLMQKKAELTHQVARLREEQAAFEERVEGLLAVL-EAQFIDL----S 665 (984)
T ss_pred HHHHHHHHhccCCccCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccchh----H
Confidence 3556666778887 334443322 2223332 2345777778888899999999999988887777 4443221 1
Q ss_pred cccHHHHH-HHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHh
Q 004728 97 AESLKEEL-RRILPQVEEMRK---RKSDRKKQFV-DVLEQIEMIKSEI 139 (733)
Q Consensus 97 ~~tLkeqL-~~i~~~LEeLrk---~K~eR~~ef~-~l~~qI~~Lc~eL 139 (733)
.....+++ .+...+-|+-|. .-..|.+++. .|+.+++.--.+|
T Consensus 666 ~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei 713 (984)
T COG4717 666 TLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEI 713 (984)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 111122233222 1345677776 7777776666666
No 144
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.09 E-value=9.5e+02 Score=29.63 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 159 LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLS 191 (733)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~ 191 (733)
.+.+..|...+.+|+.+.....+.=.+|+.+|.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis 449 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQIS 449 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 455667777777887777666666666666654
No 145
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=35.01 E-value=7.8e+02 Score=28.63 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 004728 288 PNTLSVDFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTH 333 (733)
Q Consensus 288 ~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~ 333 (733)
|..+|..-+..|...+..|.+--...+..+..+++...+..|+.|.
T Consensus 236 Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~ 281 (473)
T PF14643_consen 236 PPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKICQECL 281 (473)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999886
No 146
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=34.93 E-value=4.8e+02 Score=28.39 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 97 AESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 97 ~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
..+|+.+...+....+.|.+.+..--.++..-..++.-+++.|
T Consensus 62 ~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl 104 (307)
T PF10481_consen 62 YSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQL 104 (307)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 3556666666666666666655544444433334444444333
No 147
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.68 E-value=5.7e+02 Score=26.93 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCch
Q 004728 316 ELVLKKRLELEEICRNTHMVPE 337 (733)
Q Consensus 316 elI~k~R~ELeeLWdk~~~s~e 337 (733)
.=|.-+...|..|+...+++..
T Consensus 259 ~~v~lLn~nI~~L~~~q~~~~~ 280 (302)
T PF10186_consen 259 YAVFLLNKNIAQLCFSQGIDVP 280 (302)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 3455667778888886655544
No 148
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.60 E-value=4.9e+02 Score=28.67 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 52 RRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 52 ~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
...+...+.....+.+.+..++.+.+.|..+|.
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555554444
No 149
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=34.49 E-value=1e+03 Score=29.70 Aligned_cols=118 Identities=18% Similarity=0.314 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHH
Q 004728 160 RKLEEFHRELHELQK--EKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLR 237 (733)
Q Consensus 160 e~LeeL~~~L~~Lq~--EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~Le 237 (733)
++|.+++.-|.-|.. ++++|...+..+++.+..+.. |.|.. .|....++..+..+.-+.
T Consensus 151 ~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vs--------------p~Lv~-----al~~~~~~~~~~~~~if~ 211 (766)
T PF10191_consen 151 DRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVS--------------PQLVQ-----ALNSRDVDAAKEYVKIFS 211 (766)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhh--------------HHHHH-----HHHhcCHHHHHHHHHHHH
Confidence 666677766666655 578888888888888765543 11111 112222344444444443
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 004728 238 EVKIQRMQKLQD-----LATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTS 312 (733)
Q Consensus 238 eeK~~R~~kl~e-----L~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~ 312 (733)
.. .|+..+.. ....+..+|......... ..|..... .+=..++..++.|+.-+-.+=-.
T Consensus 212 ~i--~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~~-~~~~~~L~-------------~fyd~ll~~l~~E~~w~~~vF~~ 275 (766)
T PF10191_consen 212 SI--GREPQLEQYYCKCRKAPLQRLWQEYCQSDQS-QSFAEWLP-------------SFYDELLSLLHQELKWCSQVFPD 275 (766)
T ss_pred Hc--CCHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHH-------------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 44444433 456778899876655421 22322111 12236677777777766555433
No 150
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.30 E-value=6e+02 Score=27.10 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 157 LSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVL 197 (733)
Q Consensus 157 LS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~L 197 (733)
-+.++++.|...++.++.....=..++..+...+..|-..+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887777777776667777666666665544
No 151
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.32 E-value=5.8e+02 Score=26.64 Aligned_cols=61 Identities=20% Similarity=0.337 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 75 DLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIK 136 (733)
Q Consensus 75 El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (733)
|...|.+.+...|.-. .+++..+-|+.+++.+...=.-.....+-|.++|.-+..-+..+-
T Consensus 131 e~~~l~kvis~~p~Rs-Et~k~l~el~keleel~~~~~s~~~klelrRkqf~~lm~~~~elQ 191 (222)
T KOG3215|consen 131 EYSALSKVISDCPARS-ETDKDLNELKKELEELDDLNNSTETKLELRRKQFKYLMVSTEELQ 191 (222)
T ss_pred HHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHhhHHHHH
Confidence 4455666666544221 133334445544443333333344456677888877766665554
No 152
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=33.22 E-value=8.3e+02 Score=28.40 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhHHHHHHHHHhcCchhhc
Q 004728 357 ANVLEQIELQIAKVKEEAFSR-KEILERVEKWLGACEEECWLEEYNRDDNRYN 408 (733)
Q Consensus 357 eeLLe~~E~EI~rLKe~~~sr-k~IlelVekw~~l~eEe~~LEe~skDpnRy~ 408 (733)
...|+.+..-+..++..|... +..+..|..+=.++. ..++.|..-=++|.
T Consensus 410 ~~~l~~~~~~Ld~Ie~~Y~~fh~~~~~~~~~yP~~i~--~e~~~Y~~~l~~~f 460 (473)
T PF14643_consen 410 KEHLEKALDLLDQIEEEYEDFHKKQTAIVMEYPEMIL--KELESYSESLCQFF 460 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 334555566666677777654 677777777765553 33555555445554
No 153
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.86 E-value=7.7e+02 Score=27.92 Aligned_cols=148 Identities=14% Similarity=0.254 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHH-
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSN- 178 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~- 178 (733)
.+..+..+-..+.+.+.+- ..-+..+..||.+|.. -++.. -.+-.+--++++|.-|-.-++.|+.--..
T Consensus 62 a~~~i~~L~~~i~~ik~kA-------~~sE~~V~~it~dIk~-LD~AK--rNLT~SIT~LkrL~MLv~a~~qL~~~~~~r 131 (383)
T PF04100_consen 62 AQEAIQELFEKISEIKSKA-------EESEQMVQEITRDIKQ-LDNAK--RNLTQSITTLKRLQMLVTAVEQLKELAKKR 131 (383)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444455555555544433 2355667778887732 22110 00111122345555555555555554433
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------
Q 004728 179 RLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQK-LQDL------- 250 (733)
Q Consensus 179 Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~k-l~eL------- 250 (733)
+..++..+...+.+|+... ... -|-+.|..|...+..|+..-...+.. +..+
T Consensus 132 ~Y~e~a~~L~av~~L~~~F----~~y----------------ksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~ 191 (383)
T PF04100_consen 132 QYKEIASLLQAVKELLEHF----KPY----------------KSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDE 191 (383)
T ss_pred CHHHHHHHHHHHHHHHHHH----Hcc----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3345555555555554322 111 02345666666666665443333222 1221
Q ss_pred -----HHHHHHHHHhcCC-CHHHHHHhHhhhhc
Q 004728 251 -----ATTMLELWNLMDT-PVEEQQAFQSVTCN 277 (733)
Q Consensus 251 -----~~~I~eLW~~L~i-p~eEr~~F~~~~~~ 277 (733)
...+..-|..++. ..+.|+.+..-+|+
T Consensus 192 ~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~ 224 (383)
T PF04100_consen 192 SPGQSSQQLSDACLVVDALGPDVREELIDWFCN 224 (383)
T ss_pred cccchHhHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 2345555555555 55566666655553
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.85 E-value=1.2e+02 Score=34.15 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCc-ccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 107 ILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISS-KTVVD-DADLSLRKLEEFHRELHELQKEKSNRLKQVQ 184 (733)
Q Consensus 107 i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~-~~~vd-e~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~ 184 (733)
-|.+|+.|+..+..--..+.++..++.+|..+|....+-... .-.++ .......++...+..|...+.++...-..|.
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~ 297 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVS 297 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345566677777777777777888888888777532210000 00011 1223345566666677777777777777777
Q ss_pred HHHHHHHHHHHHhC
Q 004728 185 DHLNTLSSLCSVLG 198 (733)
Q Consensus 185 ~l~~~I~~L~~~Lg 198 (733)
++..++..+..+|.
T Consensus 298 ~~t~~L~~IseeLe 311 (359)
T PF10498_consen 298 ERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666663
No 155
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.58 E-value=5.6e+02 Score=26.99 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 51 YRRKVDQANRCRAQLRQAIADSEADLAAICS 81 (733)
Q Consensus 51 y~~kVdee~~~r~~L~qsIa~~~~El~~L~s 81 (733)
.+..+++-...+..+.+.+..+.+|++.|-.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888888888888887754
No 156
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=32.49 E-value=4.1e+02 Score=29.14 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 50 VYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 50 vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
-||..|++++.++..|.+.+......+..|.+++.
T Consensus 224 DWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit 258 (384)
T KOG0972|consen 224 DWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT 258 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 36667788887777777777777777776665554
No 157
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=32.37 E-value=4.1e+02 Score=29.57 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccc
Q 004728 17 SLLYELQIIWDEVGETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQT 96 (733)
Q Consensus 17 ~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~ 96 (733)
.+.+++.+||-+.-+........ -.+...+|.+.|+..-..|.++ ...++..+..||+|.
T Consensus 228 ~s~re~~d~W~~~ae~~~~e~~~----S~efak~~G~lvna~m~lr~~~-------qe~~e~~L~~LnlPT--------- 287 (320)
T TIGR01834 228 KTAKALYDLWVIAAEEAYAEVFA----SEENAKVHGKFINALMRLRIQQ-------QEIVEALLKMLNLPT--------- 287 (320)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhCCCCC---------
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 97 AESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQ 131 (733)
Q Consensus 97 ~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~q 131 (733)
+.+++.+...|.+|+++-....+++.++..+
T Consensus 288 ----RsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 288 ----RSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 158
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=31.69 E-value=3.8e+02 Score=24.66 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc----ccc-cccccHHHHHHHHHHHHHH
Q 004728 39 MLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIR----QSD-QTAESLKEELRRILPQVEE 113 (733)
Q Consensus 39 ~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~----~~e-~~~~tLkeqL~~i~~~LEe 113 (733)
.|.=.|+|. +++|+++.+......++...++.++ +..|....... .++ -....|+++|+..+-++..
T Consensus 9 qLqFvEEEa-~LlRRkl~ele~eN~~l~~EL~kyk-------~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~ 80 (96)
T PF11365_consen 9 QLQFVEEEA-ELLRRKLSELEDENKQLTEELNKYK-------SKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINE 80 (96)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-------HhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 333344444 7889999988888888866555554 44543221110 011 1123477777766666655
Q ss_pred HHH
Q 004728 114 MRK 116 (733)
Q Consensus 114 Lrk 116 (733)
|..
T Consensus 81 Ls~ 83 (96)
T PF11365_consen 81 LSG 83 (96)
T ss_pred Hhh
Confidence 543
No 159
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=31.43 E-value=7.5e+02 Score=27.36 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 221 ISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLEL 257 (733)
Q Consensus 221 LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eL 257 (733)
.+.++=..|...+..|++...+-+..+.+....+..|
T Consensus 266 ~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 266 ASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667788888888888888777777777776655
No 160
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.33 E-value=4.7e+02 Score=24.90 Aligned_cols=33 Identities=9% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 47 CLEVYRRKVDQANRCRAQLRQAIADSEADLAAI 79 (733)
Q Consensus 47 ~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L 79 (733)
-+..|+..++.....+..|...|.++..-+..|
T Consensus 14 ~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l 46 (140)
T PRK03947 14 QLQALQAQIEALQQQLEELQASINELDTAKETL 46 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777766666665555444
No 161
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=29.69 E-value=6.6e+02 Score=26.15 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004728 160 RKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGID 200 (733)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d 200 (733)
..|.-|+.+|.+.+.|.+.+...+..++.++...-..|...
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNK 50 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 45778999999999999999999999999998888877543
No 162
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.63 E-value=1.7e+02 Score=32.21 Aligned_cols=31 Identities=19% Similarity=0.500 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 106 RILPQVEEMRKRKSDRKKQFVDVLEQIEMIK 136 (733)
Q Consensus 106 ~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (733)
.+...|+.|.++.++-.+++..+..+...+.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 163
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.58 E-value=7.5e+02 Score=29.91 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHH
Q 004728 292 SVDFISYVETEVSRLEELKTS------KMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIEL 365 (733)
Q Consensus 292 S~~~Ie~le~EV~RLeeLK~~------~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~ 365 (733)
...-|..++.-|+||+..-+. .|+..|++++.+|+.+-+.++... --.-=++..+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~------------------~~~rei~~~~~ 481 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV------------------RKDREIRARDR 481 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhhHHHHHHHH
Confidence 445666677777776654433 233444455555555444443111 11122456677
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 004728 366 QIAKVKEEAFSRKEILERVEKWLG 389 (733)
Q Consensus 366 EI~rLKe~~~srk~IlelVekw~~ 389 (733)
+|.+|+..+...+.-.+-.++-..
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 482 RIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666655444444444333
No 164
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.58 E-value=9.4e+02 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 004728 158 SLRKLEEFHRELHELQKEKSNRL 180 (733)
Q Consensus 158 S~e~LeeL~~~L~~Lq~EK~~Rl 180 (733)
+.+-+++|+..|+.++..|..+.
T Consensus 372 tqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 372 TQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566666666666665544
No 165
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=29.37 E-value=6.5e+02 Score=26.22 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 107 ILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDAD-LSLRKLEEFHRELHELQKEKSNRLKQVQD 185 (733)
Q Consensus 107 i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~d-LS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~ 185 (733)
+..+|.+...+-..+..++..|+.++...-+.+.....-.. ...+.. --.-.|+.....|+....+..--..++..
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~---~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~ 91 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQ---ELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ 91 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence 33455556666677888899999888888877743221000 000000 01234455566666666665555566666
Q ss_pred HHHHHHHHHHHhCC
Q 004728 186 HLNTLSSLCSVLGI 199 (733)
Q Consensus 186 l~~~I~~L~~~Lg~ 199 (733)
+..++..|-..+..
T Consensus 92 le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 92 LEAELAELREELAC 105 (202)
T ss_pred hHHHHHHHHHHHHh
Confidence 66667666666643
No 166
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.74 E-value=5.8e+02 Score=25.47 Aligned_cols=131 Identities=18% Similarity=0.410 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 50 VYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVL 129 (733)
Q Consensus 50 vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~ 129 (733)
++..+|+-....|.+|..-...++.|...|..+|.+ ++.++..+...++.|.+....=...+.++-
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~e--------------vk~~v~~~I~evD~Le~~er~aR~rL~eVS 68 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEE--------------VKEEVSEVIEEVDKLEKRERQARQRLAEVS 68 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777777777777777777776663 444555555556655443222111222221
Q ss_pred HHHHHHHH-HhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004728 130 EQIEMIKS-EILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGID 200 (733)
Q Consensus 130 ~qI~~Lc~-eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d 200 (733)
.....+.. +| ..-|.. ..+--+-+.-+.+=..+|..-+.+.+.|+..+...+..-..|...+|+-
T Consensus 69 ~~f~~ysE~di--k~AYe~----A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vv 134 (159)
T PF05384_consen 69 RNFDRYSEEDI--KEAYEE----AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVV 134 (159)
T ss_pred hhhcccCHHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 00 000100 0000001111222233444555566777887777777777777776653
No 167
>PF14992 TMCO5: TMCO5 family
Probab=28.73 E-value=7.2e+02 Score=27.15 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004728 55 VDQANRCRAQLRQAIADSEADLAAICSAMGER 86 (733)
Q Consensus 55 Vdee~~~r~~L~qsIa~~~~El~~L~seLge~ 86 (733)
++++|. .+++.|...+..+..|-+++-..
T Consensus 16 ldE~Nq---~lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 16 LDEANQ---SLLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 56777777777777777666543
No 168
>PF14992 TMCO5: TMCO5 family
Probab=27.29 E-value=8.5e+02 Score=26.63 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 11 VETTCGSLLYELQIIWDEVGETDTDRDKMLLELEQEC--LEVYRRKVDQANRCRAQLRQAIADSEADLAA 78 (733)
Q Consensus 11 ~~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~--l~vy~~kVdee~~~r~~L~qsIa~~~~El~~ 78 (733)
-+.++.++..++-..=+-++.++++ +....+-+..+ ++....+++..+ ..+.++|.+++.++..
T Consensus 30 ~E~~iq~Le~Eit~~~~~~~~~e~e-~~~~~~~e~~l~~le~e~~~LE~~n---e~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 30 KEGAIQSLEREITKMDHIADRSEEE-DIISEERETDLQELELETAKLEKEN---EHLSKSVQELQRKQDE 95 (280)
T ss_pred HHHHHHHHHHHHHHHccccCchhHH-hhhhhchHHHHHHHHhhhHHHhhhh---Hhhhhhhhhhhhhhcc
Confidence 3666777777777766666665443 33333333322 223334444443 3556677777766553
No 169
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=27.20 E-value=2.5e+02 Score=27.22 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 62 RAQLRQAIADSEADLAAICSAMGE 85 (733)
Q Consensus 62 r~~L~qsIa~~~~El~~L~seLge 85 (733)
...+-..|....+.|..|.+.|=.
T Consensus 71 ~~elA~dIi~kakqIe~LIdsLPg 94 (144)
T PF11221_consen 71 IKELATDIIRKAKQIEYLIDSLPG 94 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445667788888899999998843
No 170
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.18 E-value=5.5e+02 Score=24.40 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 161 KLEEFHRELHELQKEKSNRLKQVQDHLNTLSSL 193 (733)
Q Consensus 161 ~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L 193 (733)
+++.+...+..|+.....=.+++..+...+..+
T Consensus 102 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 102 RKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 171
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.66 E-value=6.2e+02 Score=24.88 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 219 MSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWN 259 (733)
Q Consensus 219 ~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~ 259 (733)
-.+|.+.+..|...+..|+++-..-...+..+..++..|=.
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34688899999999999998888888888888777766644
No 172
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=26.61 E-value=1.1e+03 Score=27.67 Aligned_cols=125 Identities=20% Similarity=0.207 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccc---cccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004728 167 RELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSD---IHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQR 243 (733)
Q Consensus 167 ~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~e---v~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R 243 (733)
..+.+||. |..|.+.|.++.+.+..=.++|=.|-...+-+ +...+.+ -.+.++..++.++.-+.+|..-
T Consensus 345 ~kvkeLQ~-k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqn-------Lqe~la~tqk~LqEsr~eKetL 416 (527)
T PF15066_consen 345 KKVKELQM-KITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQN-------LQEALANTQKHLQESRNEKETL 416 (527)
T ss_pred HHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHH
Confidence 33444433 44566777777777666666664332222100 0000000 0122333344444444555555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Q 004728 244 MQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSK 313 (733)
Q Consensus 244 ~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~ 313 (733)
+-++..+...-..|=++--....++..|.+.+..+ +.++..-+.||+||+.+|.+.
T Consensus 417 qlelkK~k~nyv~LQEry~~eiQqKnksvsqclEm--------------dk~LskKeeeverLQ~lkgel 472 (527)
T PF15066_consen 417 QLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM--------------DKTLSKKEEEVERLQQLKGEL 472 (527)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHhhhhHHHHHHHHHHHHHH
Confidence 55555555555566666556666777777765443 257788899999999999763
No 173
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.55 E-value=1.2e+03 Score=28.05 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004728 163 EEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGID 200 (733)
Q Consensus 163 eeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d 200 (733)
+.|...+-.+.-+...+.+.+......++.+...|+..
T Consensus 356 d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 356 DRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555443
No 174
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.43 E-value=7.7e+02 Score=28.25 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHH
Q 004728 226 IERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSR 305 (733)
Q Consensus 226 L~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~R 305 (733)
.++|+..+..+ -.-...++..|...|...|++|.+-..|| |..+ .++|+.++.-|.+
T Consensus 260 ~erLEeqlNd~---~elHq~Ei~~LKqeLa~~EEK~~Yqs~eR--aRdi------------------~E~~Es~qtRisk 316 (395)
T PF10267_consen 260 YERLEEQLNDL---TELHQNEIYNLKQELASMEEKMAYQSYER--ARDI------------------WEVMESCQTRISK 316 (395)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HhHH------------------HHHHHHHHHHHHH
Confidence 34444444444 34456678889999999999999876665 3332 2688889998888
Q ss_pred HH
Q 004728 306 LE 307 (733)
Q Consensus 306 Le 307 (733)
||
T Consensus 317 lE 318 (395)
T PF10267_consen 317 LE 318 (395)
T ss_pred HH
Confidence 88
No 175
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.08 E-value=5.7e+02 Score=27.33 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 159 LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCS 195 (733)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~ 195 (733)
..+-++|+....+|++|...=.+++..++.+|..|-.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999998888899888888876654
No 176
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.94 E-value=3.4e+02 Score=29.63 Aligned_cols=104 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCCCccccccccccccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHH
Q 004728 84 GERPVHIRQSDQTAESLKEE---LRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLR 160 (733)
Q Consensus 84 ge~p~~~~~~e~~~~tLkeq---L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e 160 (733)
|+.|-..+ +-+++|++. +..++..|.+-..+-.+|-.++.+|+.|+.++-.+--....+.-+ -.-
T Consensus 50 GikPP~PE---QYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVE---------AQL 117 (305)
T PF15290_consen 50 GIKPPNPE---QYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVE---------AQL 117 (305)
T ss_pred CCCCCCHH---HhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 161 KLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGI 199 (733)
Q Consensus 161 ~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~ 199 (733)
-|.+-+..|+.|+.-.+.=..-+.+--.-|+.++..+.+
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINi 156 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINI 156 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhh
No 177
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.71 E-value=1.5e+03 Score=28.94 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 004728 294 DFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVKEE 373 (733)
Q Consensus 294 ~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLKe~ 373 (733)
+-++....|+.-|...|. +++.=+...-..|.+|-....-..-.-.. +.-+.+-+...|+-...+|.+|..|+..
T Consensus 403 kelE~k~sE~~eL~r~kE-~Lsr~~d~aEs~iadlkEQVDAAlGAE~M----V~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKE-RLSRELDQAESTIADLKEQVDAALGAEEM----VEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcHHHH----HHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 345555556555555443 34433444444454443333211111111 1122223456788888888888887766
Q ss_pred HHhhhHHHH--------HHHHHHHHhHHHHHHHHHhcC--chhhccCCCCccchHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 004728 374 AFSRKEILE--------RVEKWLGACEEECWLEEYNRD--DNRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASKTIA 443 (733)
Q Consensus 374 ~~srk~Ile--------lVekw~~l~eEe~~LEe~skD--pnRy~nrrGah~~LlreEK~Rk~v~KLPklee~L~~kl~~ 443 (733)
-..+..+.+ +.++...+---...|...-++ ..-|- |.. ---|.|-++.+|--...+|+.....
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yD--rdq-----TI~KfRelva~Lqdqlqe~~dq~~S 550 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYD--RDQ-----TIKKFRELVAHLQDQLQELTDQQES 550 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh--HHH-----HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 554433333 222222111111111111000 00110 111 1246777888888888888888888
Q ss_pred HHHHcCCeeEEC
Q 004728 444 WEKERGVEFLYD 455 (733)
Q Consensus 444 WE~e~g~pFl~d 455 (733)
-+++-..+--+|
T Consensus 551 seees~q~~s~~ 562 (1243)
T KOG0971|consen 551 SEEESQQPPSVD 562 (1243)
T ss_pred hHHHhcCCCCCc
Confidence 888877666666
No 178
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=25.71 E-value=2.1e+02 Score=35.31 Aligned_cols=211 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCccccccccccccHHHHHHHHHHH
Q 004728 39 MLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG--------ERPVHIRQSDQTAESLKEELRRILPQ 110 (733)
Q Consensus 39 ~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg--------e~p~~~~~~e~~~~tLkeqL~~i~~~ 110 (733)
.+..+.++.....+..+.+.++ .+++...+...+.++..+-..+. ..+....+.+.....+.+++..+...
T Consensus 11 qF~Dln~~~~~fqr~f~~ev~r-~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~ 89 (759)
T PF01496_consen 11 QFRDLNEDVSAFQRKFVNEVRR-CDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNEN 89 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECccchhHHHHHhhhcccc-HHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCccCcccccCCCC-------------CCHHHHHHHHHHHHHHHHH-
Q 004728 111 VEEMRKRKSDRKKQFVDVLEQIEMIKSE-ILGSTVYISSKTVVDDAD-------------LSLRKLEEFHRELHELQKE- 175 (733)
Q Consensus 111 LEeLrk~K~eR~~ef~~l~~qI~~Lc~e-L~g~~~~~~~~~~vde~d-------------LS~e~LeeL~~~L~~Lq~E- 175 (733)
++.|.++..+..+....+......+... +..-..+.......+.-. +..+..+.|+..+.+....
T Consensus 90 ~e~L~~~~~~L~E~~~~L~~~~~~l~~~~~~~l~~~~~l~~~~~~l~~~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N 169 (759)
T PF01496_consen 90 LEKLEEELNELEEEKNVLEEEIEFLEELKLEELEPWKNLDIDLEELESSKFLNLGFIAGVIPREKIESFERILWRATRGN 169 (759)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhhccccceeeeEEEEEEehhhHHHHHHHHHHhccCC
Q ss_pred ---HHHHHHHH-------------------HHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHH
Q 004728 176 ---KSNRLKQV-------------------QDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAI 233 (733)
Q Consensus 176 ---K~~Rl~kv-------------------~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l 233 (733)
+....+.. .+..++|.++|..+|...... ++..+.-.+.+..++..+
T Consensus 170 ~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~-----------p~~~~~p~e~~~~l~~~i 238 (759)
T PF01496_consen 170 IFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDL-----------PEDEGTPEEAIKELEEEI 238 (759)
T ss_dssp ----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B---------------GGGGG-HHHHHHHHHHH
T ss_pred eEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCceecCC-----------CCccccHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004728 234 HKLREVKIQRMQKLQDLATTMLELWNLM 261 (733)
Q Consensus 234 ~~LeeeK~~R~~kl~eL~~~I~eLW~~L 261 (733)
++++++..+-.+++..+..++......+
T Consensus 239 ~~l~~~~~~~~~~l~~~~~~~~~~l~~~ 266 (759)
T PF01496_consen 239 EELEKELEELEEELKKLLEKYAEELEAW 266 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 179
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=25.59 E-value=3.5e+02 Score=28.46 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHH------------------HcCCeeEECCccHHHHHHHHHHHHHHHHHHHHHH
Q 004728 419 RAEKARSLVNKLPGMVEALASKTIAWEK------------------ERGVEFLYDGVRLLSMLEEYTILRQEKEQERRRQ 480 (733)
Q Consensus 419 reEK~Rk~v~KLPklee~L~~kl~~WE~------------------e~g~pFl~dG~~lLe~Lee~~~~r~eKE~ek~r~ 480 (733)
|++..-+...|+|+++.++..++..=+. .+|.-.-...-+|.+||++- || ++|++.
T Consensus 122 Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~~k-----Ek-eeKKk~ 195 (217)
T PF10147_consen 122 REKEIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQEK-----EK-EEKKKK 195 (217)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHHHH-----HH-HHHHHH
Confidence 4444445566778877777766653322 24555555667799999644 22 334445
Q ss_pred HHHHHHh
Q 004728 481 RDQKKLQ 487 (733)
Q Consensus 481 R~~KK~q 487 (733)
++.||-+
T Consensus 196 K~aKkk~ 202 (217)
T PF10147_consen 196 KEAKKKE 202 (217)
T ss_pred HHHHHHH
Confidence 6666544
No 180
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.28 E-value=1.1e+03 Score=27.44 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=71.0
Q ss_pred HHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc
Q 004728 19 LYELQIIWDEVGETDTDRDKMLLELEQECLEVYR---RKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQ 95 (733)
Q Consensus 19 l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~---~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~ 95 (733)
+.+|..+|+..-.+-.+....|.+ +.+|+++=. +.+.+....-...-+.|...+..-+.|.++|.--|-... .
T Consensus 309 ~~~ltqqwed~R~pll~kkl~Lr~-~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~---r 384 (521)
T KOG1937|consen 309 MEELTQQWEDTRQPLLQKKLQLRE-ELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ---R 384 (521)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH---H
Confidence 668899999888877765544333 233443322 122222221222223344444445667777764332111 0
Q ss_pred cc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHH
Q 004728 96 TA--ESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQ 173 (733)
Q Consensus 96 ~~--~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq 173 (733)
.. --+++=..++|.+=+++.+--. +=.+|+.|+..+...|..+ |. .+| .+--..
T Consensus 385 k~ytqrikEi~gniRKq~~DI~Kil~----etreLqkq~ns~se~L~Rs--fa----vtd--------------ellf~s 440 (521)
T KOG1937|consen 385 KVYTQRIKEIDGNIRKQEQDIVKILE----ETRELQKQENSESEALNRS--FA----VTD--------------ELLFMS 440 (521)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhh--HH----HHH--------------HHHHHH
Confidence 00 0011111222222222222222 2355667777777666332 21 111 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 174 KEKSNRLKQVQDHLNTLSSLCSVL 197 (733)
Q Consensus 174 ~EK~~Rl~kv~~l~~~I~~L~~~L 197 (733)
..+..-..+.-.+...||..|++|
T Consensus 441 akhddhvR~aykllt~iH~nc~ei 464 (521)
T KOG1937|consen 441 AKHDDHVRLAYKLLTRIHLNCMEI 464 (521)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHH
Confidence 444555557777888888888876
No 181
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=25.24 E-value=24 Score=44.11 Aligned_cols=89 Identities=12% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 51 YRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLE 130 (733)
Q Consensus 51 y~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~ 130 (733)
+..-|++..+.|..+-+.-..+..++..|...|..-.-.-...++....+..+|..+...+++......+.......+..
T Consensus 136 L~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~ 215 (859)
T PF01576_consen 136 LNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQS 215 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444455555555444432110000122223345555555555555555544444444444444
Q ss_pred HHHHHHHHh
Q 004728 131 QIEMIKSEI 139 (733)
Q Consensus 131 qI~~Lc~eL 139 (733)
++..|...|
T Consensus 216 E~~eL~~qL 224 (859)
T PF01576_consen 216 ENSELTRQL 224 (859)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444444444
No 182
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.14 E-value=8e+02 Score=25.78 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCCHHH
Q 004728 250 LATTMLELWNLMDTPVEE 267 (733)
Q Consensus 250 L~~~I~eLW~~L~ip~eE 267 (733)
...++..+|+.+.+..++
T Consensus 147 ~~ek~r~vlea~~~E~~y 164 (251)
T PF11932_consen 147 LAEKFRRVLEAYQIEMEY 164 (251)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445666666666654443
No 183
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.62 E-value=7.2e+02 Score=29.44 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 49 EVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 49 ~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
..|...|++....++...-......+|...|+..|.
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~ 451 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333333444444444433
No 184
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.60 E-value=8.4e+02 Score=25.65 Aligned_cols=40 Identities=28% Similarity=0.570 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
++.++..++..++.++++-.+..+.+.+++.++......|
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555444
No 185
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.59 E-value=6.7e+02 Score=29.36 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004728 98 ESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEIL 140 (733)
Q Consensus 98 ~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (733)
..|.+-+..+..++.+++.+..+--.++.++..+|..+-.+|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777788888887777777777777777777777664
No 186
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.57 E-value=1.9e+02 Score=29.05 Aligned_cols=44 Identities=30% Similarity=0.532 Sum_probs=0.0
Q ss_pred CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 004728 30 GETDTDRDKM---LLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPV 88 (733)
Q Consensus 30 G~~e~eRd~~---l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~ 88 (733)
++++++|+.+ |.++|.|+. .|.|-|+..+.....|-+.||+.++
T Consensus 25 ~LsEeE~eeLr~EL~KvEeEI~---------------TLrqvL~aKer~~~eLKrkLGit~l 71 (162)
T PF04201_consen 25 GLSEEEREELRSELAKVEEEIQ---------------TLRQVLAAKERHCAELKRKLGITPL 71 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhHHHHHHHHCCchH
No 187
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=24.48 E-value=8.6e+02 Score=25.77 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 223 NDAIERLTIAIHKLREVKIQRMQKLQDLATTM 254 (733)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I 254 (733)
...+..|+..+.+++.++.+|...+.++...+
T Consensus 140 ~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 140 SEVIRQLRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998887776533
No 188
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=24.48 E-value=1e+03 Score=26.73 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCcccccC---CCCCCHHHHHHHHHHHHHHHH
Q 004728 120 DRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVD---DADLSLRKLEEFHRELHELQK 174 (733)
Q Consensus 120 eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vd---e~dLS~e~LeeL~~~L~~Lq~ 174 (733)
.-...+.++...|..|-.-||..++.. +.++ ...+-...++.|..++.-|..
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~---~~l~~~~~~~~l~~~l~~L~~~lslL~~ 260 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKM---SSLDSDTSSSPLLPALNELERQLSLLDP 260 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccc---ccccccCCcchHHHHHHHHHHHHHhcCH
Confidence 346678888888999988886533211 1111 122335778888888888864
No 189
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.20 E-value=9.4e+02 Score=26.09 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 104 LRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQV 183 (733)
Q Consensus 104 L~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv 183 (733)
+..-...+.++.+.+..--+++..+..+|..+...+.... .+.+=+...+..|+..|..+.+...+|.+.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~---------~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ---------KEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777778878777777663211 1223356788888888888888888888888
Q ss_pred HHHHHHHHH------HHHHh-C-CCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 184 QDHLNTLSS------LCSVL-G-IDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTML 255 (733)
Q Consensus 184 ~~l~~~I~~------L~~~L-g-~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~ 255 (733)
..-.+.++. +.++| + -+|.+.+..+. .+.. -.+-....|..+......|++.+.....+++.+..-..
T Consensus 104 ~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvt-Ai~~---iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~ 179 (265)
T COG3883 104 KKRARAMQVNGTATSYIDVILNSKSFSDLISRVT-AISV---IVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQN 179 (265)
T ss_pred HHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHH-HHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666542 22222 2 12222221110 0000 01112445666777777777776666666655444444
Q ss_pred HH
Q 004728 256 EL 257 (733)
Q Consensus 256 eL 257 (733)
+|
T Consensus 180 e~ 181 (265)
T COG3883 180 EL 181 (265)
T ss_pred HH
Confidence 33
No 190
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.14 E-value=3.2e+02 Score=31.57 Aligned_cols=72 Identities=28% Similarity=0.319 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 11 VETTCGSLLYELQIIWDEVGETDTDRDKMLLELEQECLE-VYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 11 ~~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~-vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
..|.+=.+|.-||+=||-|=+....-.+.|...-||.-. +|+. |.+-..-++|.++..++++-|+.+-...|
T Consensus 65 satSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELShaLYqh--DAAcrViaRL~kE~~eareaLa~~~~qa~ 137 (506)
T KOG0289|consen 65 SATSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHALYQH--DAACRVIARLTKERDEAREALAKLSPQAG 137 (506)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 567889999999999999999999888888888887765 4542 44444455566666666666655544444
No 191
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=23.81 E-value=8.1e+02 Score=30.08 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 004728 430 LPGMVEALASKTIAWE 445 (733)
Q Consensus 430 LPklee~L~~kl~~WE 445 (733)
+|.-++.|-..+..-.
T Consensus 421 ipral~~lF~~~~~~~ 436 (670)
T KOG0239|consen 421 IPRALEKLFRTITSLK 436 (670)
T ss_pred cHHHHHHHHHHHHhhc
Confidence 5666655555555433
No 192
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=23.81 E-value=6.9e+02 Score=28.64 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 004728 297 SYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVK 371 (733)
Q Consensus 297 e~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLK 371 (733)
+.+|..|+-+-++-.. =|..++.+|..++.+|.|--.+|. -|-.|.++.+...|.+|+
T Consensus 261 erLEeqlNd~~elHq~----Ei~~LKqeLa~~EEK~~Yqs~eRa-------------Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 261 ERLEEQLNDLTELHQN----EIYNLKQELASMEEKMAYQSYERA-------------RDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHH
Confidence 3455555555554433 235677888888888876655542 144677888888888887
No 193
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.68 E-value=7.4e+02 Score=24.72 Aligned_cols=14 Identities=14% Similarity=0.442 Sum_probs=9.3
Q ss_pred hHhCCChHHHHHHH
Q 004728 27 DEVGETDTDRDKML 40 (733)
Q Consensus 27 dEIG~~e~eRd~~l 40 (733)
..-|++.++=+.++
T Consensus 12 e~~Gft~~QAe~i~ 25 (177)
T PF07798_consen 12 EAAGFTEEQAEAIM 25 (177)
T ss_pred HHCCCCHHHHHHHH
Confidence 34599988765553
No 194
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=23.33 E-value=1.1e+03 Score=28.24 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHH
Q 004728 55 VDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQV-EEMRK-RKSDRKKQFVDVLEQI 132 (733)
Q Consensus 55 Vdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~L-EeLrk-~K~eR~~ef~~l~~qI 132 (733)
.+..+....+|...|.+.+.++.+....=-..-.+.- .....|..+...+...+ +-+.. .-..-..++.+..++.
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~---~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~ 85 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSL---QSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEEL 85 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q ss_pred HHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccc
Q 004728 133 EMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQ-KEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPS 211 (733)
Q Consensus 133 ~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq-~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~ps 211 (733)
..|..+|........ ..+.|.++...+..++ ...+.+.-.......++..+...++-+....
T Consensus 86 ~~L~~eL~~~~~~l~----------~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~------- 148 (593)
T PF06248_consen 86 QELKRELEENEQLLE----------VLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEE------- 148 (593)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccc-------
Q ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004728 212 FCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLM 261 (733)
Q Consensus 212 l~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L 261 (733)
...+..|+.....+ ...+...+.+.|+.+
T Consensus 149 -----------~~i~~~Lk~e~~~l----------r~~L~~~L~~~w~~l 177 (593)
T PF06248_consen 149 -----------LKILKLLKDEYSEL----------RENLQYQLSEEWERL 177 (593)
T ss_pred -----------cHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh
No 195
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=23.30 E-value=5.3e+02 Score=28.94 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 004728 359 VLEQIELQIAKVKEEAFSRKEILERVEKWLG 389 (733)
Q Consensus 359 LLe~~E~EI~rLKe~~~srk~IlelVekw~~ 389 (733)
-...|+.-++||+-+...|+.+.+..+++..
T Consensus 85 ~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~ 115 (355)
T PF09766_consen 85 EDDEHQLMLARLEFELEQRKRLEEQLKELEQ 115 (355)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999988888877753
No 196
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.23 E-value=8.5e+02 Score=25.23 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 62 RAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVL 129 (733)
Q Consensus 62 r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~ 129 (733)
|.++.+-+.-.+.++..+-. |-.+ .......+++.|+.|..||+.|...-..|..++..|+
T Consensus 134 k~e~EqLL~YK~~ql~~~~~--~~~~-----~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRELEE--GRSK-----SGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhhhc--cCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555666655544 3221 1234677999999999999999998888888887764
No 197
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.18 E-value=1.1e+03 Score=27.77 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcC
Q 004728 309 LKTSKMKELVLKKRLELEEICRNTH 333 (733)
Q Consensus 309 LK~~~mKelI~k~R~ELeeLWdk~~ 333 (733)
.+...++.++..+|..|.+|=.+-|
T Consensus 275 ~r~~~Lk~H~~svr~HI~~Ls~K~Y 299 (475)
T PRK10361 275 TRESALQEHIASVRNHIRLLGRKDY 299 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 3456788888999999998866644
No 198
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.83 E-value=8.6e+02 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 52 RRKVDQANRCRAQLRQAIADSEADLAAICSA 82 (733)
Q Consensus 52 ~~kVdee~~~r~~L~qsIa~~~~El~~L~se 82 (733)
+..+.+++..-++..+-|+.++..|..+...
T Consensus 5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 5 QKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555666677777777777655
No 199
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=22.63 E-value=1.1e+03 Score=26.34 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCc
Q 004728 69 IADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISS 148 (733)
Q Consensus 69 Ia~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~ 148 (733)
-..++..+..||++|.-. ..+++++ .+-.|+++-++|......++..+..|-..|+....
T Consensus 71 t~larsKLeelCRelQr~----------nk~~keE------~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~---- 130 (391)
T KOG1850|consen 71 TELARSKLEELCRELQRA----------NKQTKEE------ACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRS---- 130 (391)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcch----
Confidence 345678899999999831 2345554 34456777777777777777778888877753221
Q ss_pred ccccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 004728 149 KTVVDDADLSL-RKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGID 200 (733)
Q Consensus 149 ~~~vde~dLS~-e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d 200 (733)
...++ +.=-+|...+..|-..+..|.+.+......+. +|..+|-.
T Consensus 131 ------~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~a 176 (391)
T KOG1850|consen 131 ------KNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKA 176 (391)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH
Confidence 11122 22236777888888899999999998888876 99999853
No 200
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.47 E-value=9.9e+02 Score=25.71 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 47 CLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 47 ~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
....|+..+.+.....+.+...++.++.++......+.
T Consensus 129 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 129 VQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666677777778888877777655543
No 201
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.04 E-value=1.8e+03 Score=28.53 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004728 223 NDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTP 264 (733)
Q Consensus 223 ~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip 264 (733)
.+-+..+...+..|+..-..|+..+...+..|..+=+.|...
T Consensus 317 ~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 317 EDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 456777778888888888888888888888888888777643
No 202
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.04 E-value=1.4e+03 Score=27.18 Aligned_cols=116 Identities=8% Similarity=0.172 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 120 DRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGI 199 (733)
Q Consensus 120 eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~ 199 (733)
.|+.....+.+-+..+...|.+.. .. .... ....|......|..+ +..++..+.+...++.....++..
T Consensus 219 ~~L~n~e~i~~~~~~~~~~L~~~~-~~------~~~~-~~~~l~~~~~~l~~~---~d~~~~~~~~~l~~~~~~l~d~~~ 287 (563)
T TIGR00634 219 QRLSNLEKLRELSQNALAALRGDV-DV------QEGS-LLEGLGEAQLALASV---IDGSLRELAEQVGNALTEVEEATR 287 (563)
T ss_pred HHHhCHHHHHHHHHHHHHHHhCCc-cc------cccC-HHHHHHHHHHHHHHh---hhHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666665553210 00 0001 234555555555444 455555444444443333333322
Q ss_pred CccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 200 DFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLEL 257 (733)
Q Consensus 200 d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eL 257 (733)
+..... +...+.+..|+.++..+..++..+...-..+.++...+..+
T Consensus 288 ~l~~~~-----------~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l 334 (563)
T TIGR00634 288 ELQNYL-----------DELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKI 334 (563)
T ss_pred HHHHHH-----------HhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 221111 12234566778888877777776655444444444444333
No 203
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.65 E-value=3.4e+02 Score=27.54 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 43 LEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAI 79 (733)
Q Consensus 43 leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L 79 (733)
+-+|+-..+.+.-.+......+|..+|+++..+++.|
T Consensus 103 VqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~l 139 (171)
T PF04799_consen 103 VQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRL 139 (171)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555554444444555555555555555544
No 204
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.61 E-value=4.6e+02 Score=23.78 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHH
Q 004728 160 RKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSV-LGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLRE 238 (733)
Q Consensus 160 e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~-Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~Lee 238 (733)
.++..|+..++.+...+..=.....++...+..|-.. -+......++.+. ...+-.....-=.+.++.+...+.+|..
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vf-v~~~~~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVL-VKQEKEEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHH-hhccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004728 239 VKIQRMQKLQDLATTMLEL 257 (733)
Q Consensus 239 eK~~R~~kl~eL~~~I~eL 257 (733)
....-.+++.++..+|.++
T Consensus 85 ~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 85 QEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 205
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=21.54 E-value=9.9e+02 Score=25.38 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--cc
Q 004728 12 ETTCGSLLYELQIIWDEVGETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERP--VH 89 (733)
Q Consensus 12 ~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p--~~ 89 (733)
++.-+.+|......+..||.... .....+++.++.-+++.++..-..-...++.+...+-.++...+.+.--. ..
T Consensus 76 ~s~lg~~L~~~g~a~~~ia~~~~---~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~ 152 (244)
T cd07595 76 DSLLGKVLKLCGEAQNTLARELV---DHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSG 152 (244)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccc
Confidence 44455566666666666664433 34455667777777777654433333344444555555554444443110 00
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 004728 90 IRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDV-LEQIEMIK 136 (733)
Q Consensus 90 ~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l-~~qI~~Lc 136 (733)
..........|++++......+++-+.....+|..|.+- .+.+..|.
T Consensus 153 ~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~ 200 (244)
T cd07595 153 GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLI 200 (244)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 000011124578888887778887777777777776665 44444444
No 206
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.39 E-value=6.9e+02 Score=23.52 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004728 98 ESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEIL 140 (733)
Q Consensus 98 ~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (733)
..|..++..|...+..|.+....-.+.+.+++.++..+....+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4577788888888888888888888889999999888886553
No 207
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.19 E-value=6.3e+02 Score=24.89 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc-ccccHHHHHHHHHHHHHHHHH
Q 004728 61 CRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQ-TAESLKEELRRILPQVEEMRK 116 (733)
Q Consensus 61 ~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~-~~~tLkeqL~~i~~~LEeLrk 116 (733)
.-..|+++|-..+.|+..|... ++ ||. ...-|..|+..++.+|.+.|.
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~---~~-----pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTA---NP-----PDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---CC-----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888877321 11 222 133455555555555554444
No 208
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.28 E-value=1.7e+02 Score=33.00 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 225 AIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNL 260 (733)
Q Consensus 225 tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~ 260 (733)
-|..|...+..+...-....+.+..+..+|.+||++
T Consensus 152 ris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 152 RISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555555555554445555666777888888886
No 209
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.24 E-value=8.6e+02 Score=24.14 Aligned_cols=24 Identities=4% Similarity=0.221 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 106 RILPQVEEMRKRKSDRKKQFVDVL 129 (733)
Q Consensus 106 ~i~~~LEeLrk~K~eR~~ef~~l~ 129 (733)
.....++.++....+..+++.++.
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 210
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.22 E-value=9.2e+02 Score=28.49 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004728 97 AESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGS 142 (733)
Q Consensus 97 ~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~ 142 (733)
...|+.++..+..+++++.++..+-.+.......+....|..++..
T Consensus 126 IP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~ 171 (507)
T PF05600_consen 126 IPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIK 171 (507)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3469999999999999999999999999999999999999999643
No 211
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.18 E-value=5.3e+02 Score=22.58 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 47 CLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAM 83 (733)
Q Consensus 47 ~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seL 83 (733)
++.+|.-.|++....-..+.++=..+...+..+...|
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L 44 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKL 44 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444444444444444444444
No 212
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.09 E-value=8.9e+02 Score=28.39 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004728 81 SAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEI 139 (733)
Q Consensus 81 seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL 139 (733)
.+||+.... |.+...+|--+++.++..++.|.++-+...++-..|+.+...+-..|
T Consensus 48 kalGiegDT---P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 48 KALGIEGDT---PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HhcCCCCCC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 455654332 33445566666777777777776666665666666666555555544
Done!