Query 004728
Match_columns 733
No_of_seqs 276 out of 543
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 100.0 1E-35 3.5E-40 278.2 15.7 126 368-500 3-130 (130)
2 1i84_S Smooth muscle myosin he 91.1 0.46 1.6E-05 59.1 9.4 9 362-370 1155-1163(1184)
3 1i84_S Smooth muscle myosin he 89.3 0.35 1.2E-05 60.2 6.1 70 54-137 872-941 (1184)
4 3ol1_A Vimentin; structural ge 78.1 17 0.00058 33.0 10.7 102 11-132 14-117 (119)
5 3s84_A Apolipoprotein A-IV; fo 77.0 31 0.0011 35.7 13.7 27 58-84 35-61 (273)
6 2xs1_A Programmed cell death 6 76.5 1.2E+02 0.0041 35.3 27.9 111 73-188 468-581 (704)
7 3ghg_A Fibrinogen alpha chain; 71.6 8 0.00027 43.3 7.8 131 99-236 54-188 (562)
8 2v71_A Nuclear distribution pr 68.6 93 0.0032 30.5 19.2 81 97-189 5-85 (189)
9 3na7_A HP0958; flagellar bioge 68.3 1E+02 0.0036 31.1 23.4 84 100-197 44-127 (256)
10 2lw1_A ABC transporter ATP-bin 64.6 23 0.0008 30.3 7.9 62 62-128 24-85 (89)
11 1go4_E MAD1 (mitotic arrest de 61.9 40 0.0014 29.8 8.9 75 100-178 10-86 (100)
12 3na7_A HP0958; flagellar bioge 59.1 1.5E+02 0.0053 29.8 18.3 110 52-189 52-161 (256)
13 1l8d_A DNA double-strand break 58.1 75 0.0026 27.7 10.3 31 225-255 65-95 (112)
14 3oja_B Anopheles plasmodium-re 55.5 2.5E+02 0.0086 31.2 19.7 126 52-203 462-587 (597)
15 1go4_E MAD1 (mitotic arrest de 53.1 74 0.0025 28.1 9.0 47 156-204 8-54 (100)
16 3vkg_A Dynein heavy chain, cyt 50.8 1E+02 0.0035 42.3 13.9 95 156-258 2010-2104(3245)
17 3oja_B Anopheles plasmodium-re 50.8 2.4E+02 0.0082 31.4 15.5 78 159-254 455-532 (597)
18 3lay_A Zinc resistance-associa 48.5 1.7E+02 0.0059 28.2 11.8 65 219-311 66-130 (175)
19 2dfs_A Myosin-5A; myosin-V, in 45.6 48 0.0017 40.8 9.1 22 64-85 918-939 (1080)
20 3s84_A Apolipoprotein A-IV; fo 43.7 2.8E+02 0.0097 28.4 24.2 18 315-332 208-225 (273)
21 1sjj_A Actinin; 3-helix bundle 43.0 4.6E+02 0.016 30.6 24.5 76 158-251 402-477 (863)
22 3hnw_A Uncharacterized protein 41.7 2.1E+02 0.0073 26.4 15.9 42 99-140 93-134 (138)
23 1nfn_A Apolipoprotein E3; lipi 41.2 2.3E+02 0.008 27.4 11.7 53 122-185 105-157 (191)
24 3o0z_A RHO-associated protein 40.5 2.6E+02 0.0087 26.9 13.6 75 97-180 64-138 (168)
25 2dfs_A Myosin-5A; myosin-V, in 38.1 1.3E+02 0.0045 37.0 11.3 24 228-251 1020-1043(1080)
26 2i3s_B Checkpoint serine/threo 37.7 8.7 0.0003 27.8 0.5 12 708-719 17-28 (36)
27 1deq_A Fibrinogen (alpha chain 37.1 68 0.0023 34.7 7.5 31 224-254 113-143 (390)
28 2i3t_B Spindle assembly checkp 36.6 9.3 0.00032 29.9 0.6 12 708-719 24-35 (54)
29 3kbt_A Beta-I spectrin, spectr 36.1 3.5E+02 0.012 27.2 22.7 94 98-195 79-179 (326)
30 2v4h_A NF-kappa-B essential mo 36.0 2.1E+02 0.0071 25.6 9.2 71 13-84 34-107 (110)
31 3rrk_A V-type ATPase 116 kDa s 35.1 4.1E+02 0.014 27.6 16.2 170 12-189 62-255 (357)
32 1zke_A Hypothetical protein HP 34.5 1.8E+02 0.0061 24.4 7.9 52 318-376 14-70 (83)
33 3mq9_A Bone marrow stromal ant 33.8 2.4E+02 0.0081 30.6 11.7 44 39-82 374-419 (471)
34 1fxk_C Protein (prefoldin); ar 33.2 2.5E+02 0.0085 25.1 9.9 35 47-81 9-43 (133)
35 3ol1_A Vimentin; structural ge 32.6 2.7E+02 0.0093 24.9 10.1 32 48-79 22-53 (119)
36 1deq_A Fibrinogen (alpha chain 32.5 2.1E+02 0.0073 30.9 10.3 85 99-189 57-142 (390)
37 3ghg_A Fibrinogen alpha chain; 29.6 4.7E+02 0.016 29.5 12.7 71 100-171 115-187 (562)
38 1l8d_A DNA double-strand break 29.0 2.8E+02 0.0096 23.9 11.8 31 49-79 13-43 (112)
39 1nfn_A Apolipoprotein E3; lipi 28.7 2.9E+02 0.0098 26.8 10.0 66 53-127 92-157 (191)
40 3lay_A Zinc resistance-associa 28.6 4E+02 0.014 25.6 12.7 64 155-240 66-129 (175)
41 2a01_A Apolipoprotein A-I; fou 28.3 4.6E+02 0.016 26.1 16.1 15 247-261 222-236 (243)
42 2lw9_A Unconventionnal myosin- 28.0 88 0.003 24.0 4.6 38 294-331 6-43 (51)
43 4gwp_A Mediator of RNA polymer 27.6 2.2E+02 0.0075 25.7 8.0 91 11-115 16-106 (115)
44 2jo8_A Serine/threonine-protei 27.3 56 0.0019 25.4 3.5 25 361-385 24-49 (51)
45 3r2p_A Apolipoprotein A-I; amp 27.3 1.7E+02 0.006 27.9 8.1 27 58-84 80-106 (185)
46 3ra3_B P2F; coiled coil domain 24.4 83 0.0028 20.8 3.4 20 60-79 7-26 (28)
47 3onj_A T-snare VTI1; helix, HA 24.4 3.4E+02 0.012 23.3 10.5 28 18-45 13-41 (97)
48 2yy0_A C-MYC-binding protein; 24.1 1.3E+02 0.0044 23.4 5.2 30 111-140 21-50 (53)
49 4dci_A Uncharacterized protein 24.0 4.5E+02 0.016 24.7 10.0 66 63-136 39-104 (150)
50 2qyw_A Vesicle transport throu 23.9 3.6E+02 0.012 23.4 10.6 18 99-116 82-99 (102)
51 1vmg_A Hypothetical protein SS 23.3 1.8E+02 0.0063 25.0 6.6 66 19-87 17-85 (95)
52 3efg_A Protein SLYX homolog; x 23.1 2.9E+02 0.0099 23.0 7.6 56 29-85 5-60 (78)
53 3viq_A SWI5-dependent recombin 22.8 1.5E+02 0.0053 26.9 6.3 33 378-412 39-72 (122)
54 2c5k_T Syntaxin TLG1, T-snare 22.6 3.7E+02 0.013 23.1 10.2 24 5-28 5-28 (95)
55 3swk_A Vimentin; cytoskeleton, 21.3 3E+02 0.01 23.3 7.5 31 51-81 5-35 (86)
56 1hs7_A Syntaxin VAM3; UP-and-D 21.0 4.2E+02 0.014 23.1 9.4 48 64-119 10-58 (97)
57 3rrk_A V-type ATPase 116 kDa s 20.9 3.2E+02 0.011 28.5 9.4 45 73-120 198-244 (357)
58 3okq_A BUD site selection prot 20.1 5.3E+02 0.018 24.0 18.3 88 292-406 52-139 (141)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=100.00 E-value=1e-35 Score=278.16 Aligned_cols=126 Identities=32% Similarity=0.505 Sum_probs=115.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHhcCchhhccCCCCccchHHHHHHHHHhhh-hhHHHHHHHHHHHHHHH
Q 004728 368 AKVKEEAFSRKEILERVEKWLGACEEECWLEEYNRDDNRYNAGKGAHLTLKRAEKARSLVNK-LPGMVEALASKTIAWEK 446 (733)
Q Consensus 368 ~rLKe~~~srk~IlelVekw~~l~eEe~~LEe~skDpnRy~nrrGah~~LlreEK~Rk~v~K-LPklee~L~~kl~~WE~ 446 (733)
++|+++|.+|++||++|++|..+|.++..||+|++|||||+|||| +|++|||+|++|+| ||+|++.|+++|.+||.
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~~Rgg---~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~ 79 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFTNRGG---NLLKEEKQRAKLQKMLPKLEEELKARIELWEQ 79 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999998665 59999999999988 99999999999999999
Q ss_pred HcCCeeEECCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCC
Q 004728 447 ERGVEFLYDGVRLLSML-EEYTILRQEKEQERRRQRDQKKLQGQLIAEQEALYGS 500 (733)
Q Consensus 447 e~g~pFl~dG~~lLe~L-ee~~~~r~eKE~ek~r~R~~KK~q~q~~~e~e~~~Gs 500 (733)
++|.||+|||++|+++| ++|+.+|++||+||+| |++||. +.+|+||+|||
T Consensus 80 e~g~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~---~~~e~e~~~gs 130 (130)
T 3nrx_A 80 EHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNK---KQTETEMLYGS 130 (130)
T ss_dssp HHTSCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHCC
T ss_pred HcCCeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHhccCC
Confidence 99999999999999999 5699999999999998 999987 45999999998
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.11 E-value=0.46 Score=59.09 Aligned_cols=9 Identities=0% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 004728 362 QIELQIAKV 370 (733)
Q Consensus 362 ~~E~EI~rL 370 (733)
.+..+|..+
T Consensus 1155 ~L~~~Ieel 1163 (1184)
T 1i84_S 1155 ALKTELEDT 1163 (1184)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333444333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=89.26 E-value=0.35 Score=60.17 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 54 KVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIE 133 (733)
Q Consensus 54 kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~ 133 (733)
.+.........+...+..++.++..+...|.. ...++..+...++.+..++.+...++.++..++.
T Consensus 872 ~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~--------------e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQA--------------ETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555555555555544431 2222333334444444444444444444444444
Q ss_pred HHHH
Q 004728 134 MIKS 137 (733)
Q Consensus 134 ~Lc~ 137 (733)
.+-.
T Consensus 938 e~ee 941 (1184)
T 1i84_S 938 EEEE 941 (1184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 4
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.10 E-value=17 Score=32.97 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 004728 11 VETTCGSLLYELQIIWDEVGETDTDRDKMLLELEQ--ECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPV 88 (733)
Q Consensus 11 ~~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leq--e~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~ 88 (733)
........+..|+.-.+.++ .++.++..++.. ...+-|+.+.+.+...|..+-..|..+++.++...-.
T Consensus 14 ~~~~ye~~I~~LR~qid~~~---~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~------ 84 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLT---NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA------ 84 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHH------
Confidence 44455555555555555444 344444444432 2345577888877776666555554444444322110
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 89 HIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQI 132 (733)
Q Consensus 89 ~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI 132 (733)
..-|..++..+...|.-|++-.++ ++.+++.+|
T Consensus 85 --------r~dLE~~iesL~eEl~FLKk~hee---El~eLq~qi 117 (119)
T 3ol1_A 85 --------RLDLERKVESLQEEIAFLKKLHEE---EIQELQAQI 117 (119)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSCC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 123455555555555555555543 455555544
No 5
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=76.99 E-value=31 Score=35.67 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 58 ANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 58 e~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
+...+..+.+.+.+++..+.-...+|.
T Consensus 35 ~~~l~~~l~~~le~lr~~L~Py~~el~ 61 (273)
T 3s84_A 35 ANEVSQKIGDNLRELQQRLEPYADQLR 61 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666666655554443
No 6
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=76.54 E-value=1.2e+02 Score=35.31 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCccCcc
Q 004728 73 EADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKS---EILGSTVYISSK 149 (733)
Q Consensus 73 ~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~---eL~g~~~~~~~~ 149 (733)
..+...+....|.. .....+..-..+|..++..++..|++-..--..-...|......|.-||. +|.. +.+..
T Consensus 468 ~~ed~~~R~k~g~~-w~r~~S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l~~---~~p~~ 543 (704)
T 2xs1_A 468 EATDNDLRAKFKER-WQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNA---AIPSA 543 (704)
T ss_dssp HHHHHHHHHHCTTT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHHHH---TSCCC
T ss_pred HHHHHHHHHHhccc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHh---hCccC
Confidence 44556677778853 21111222234578888888888877655444444455555555555542 1110 11100
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 150 TVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLN 188 (733)
Q Consensus 150 ~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~ 188 (733)
..... ......+..|+..+.++..-+.+|...+.+++.
T Consensus 544 ~~~~~-~~~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~ 581 (704)
T 2xs1_A 544 NPAKT-MQGSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581 (704)
T ss_dssp CCCGG-GSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00001 112357889999999999999999877776643
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.60 E-value=8 Score=43.35 Aligned_cols=131 Identities=9% Similarity=0.173 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHH-HHHHHHHHHHHHHH
Q 004728 99 SLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLE-EFHRELHELQKEKS 177 (733)
Q Consensus 99 tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~Le-eL~~~L~~Lq~EK~ 177 (733)
.|.++-..+...|++|+.+.++-.+..++...-...+...|... +.. ..+.+-..-++. +|+.+++.|+.+..
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~r--q~q----~~dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGD--FSS----ANNRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSH--HHH----HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH--HHh----hhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45555578889999999998888777788887788888766321 100 001111333444 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh---CCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHH
Q 004728 178 NRLKQVQDHLNTLSSLCSVL---GIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKL 236 (733)
Q Consensus 178 ~Rl~kv~~l~~~I~~L~~~L---g~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~L 236 (733)
.-+..+..|+..|.++..+| ..|..-.+. -+..-|...-.+-+.....+.+++.+.++
T Consensus 128 nQlsnIrvLQsnLedq~~kIQRLEvDIdiqir-sCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR-SCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccchheeecchHHHHHHHHHHHHH
Confidence 99998888888888887765 222211110 01111222224567777777777777666
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=68.59 E-value=93 Score=30.53 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHH
Q 004728 97 AESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEK 176 (733)
Q Consensus 97 ~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK 176 (733)
..+..+++...+..++.+..+..+--.+|.+.++.=..|-.+|...- .-+..++..|+..+..|..+.
T Consensus 5 f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL------------~~~Ek~~~~L~~~~~~L~~E~ 72 (189)
T 2v71_A 5 FSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQL------------VQAEQRNRDLQADNQRLKYEV 72 (189)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888877788888777777777763210 002244555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 004728 177 SNRLKQVQDHLNT 189 (733)
Q Consensus 177 ~~Rl~kv~~l~~~ 189 (733)
..=..++.....+
T Consensus 73 e~~k~K~~~~~~e 85 (189)
T 2v71_A 73 EALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444443
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.35 E-value=1e+02 Score=31.06 Aligned_cols=84 Identities=11% Similarity=0.135 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNR 179 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~R 179 (733)
++.++..+...++.+..+....-.++.++...|.+.-..|..- -+.+.+..|...++.++.+....
T Consensus 44 l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v--------------~~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 44 KNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI--------------KSERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------SSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777777778888888888888777321 04478888888899888888888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004728 180 LKQVQDHLNTLSSLCSVL 197 (733)
Q Consensus 180 l~kv~~l~~~I~~L~~~L 197 (733)
-..+.++...|..+-..+
T Consensus 110 E~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888876655443
No 10
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=64.65 E-value=23 Score=30.25 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 62 RAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDV 128 (733)
Q Consensus 62 r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l 128 (733)
-+.|-..|+.++++++.|-..|..+.|+...++ ....|..++..+...|+. ..+|..++.++
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~-~~~~l~~~l~~~e~eLe~----~~erWeeLe~~ 85 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHE-QTQKVLADMAAAEQELEQ----AFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 346778899999999999999998876532111 234455555665555554 44555555544
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.86 E-value=40 Score=29.80 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCccccc--CCCCCCHHHHHHHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVV--DDADLSLRKLEEFHRELHELQKEKS 177 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~v--de~dLS~e~LeeL~~~L~~Lq~EK~ 177 (733)
-.+++..++..++.|+.+.....++...+..++...| |-| +|.+...-| -...|........+..++.|+.|..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~G--d~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~e 85 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQG--DYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCS--CCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcc--ccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999888888888888887765 534 343321111 1234555555677777777777755
Q ss_pred H
Q 004728 178 N 178 (733)
Q Consensus 178 ~ 178 (733)
.
T Consensus 86 r 86 (100)
T 1go4_E 86 R 86 (100)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.09 E-value=1.5e+02 Score=29.80 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 52 RRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQ 131 (733)
Q Consensus 52 ~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~q 131 (733)
+..++.......++-..|++..+.+...-..|+. +.-..++.++...++.+.++....-.++.++..+
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~------------v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE------------IKSERELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555666666666655555542 1112234566666666666666666666666666
Q ss_pred HHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 132 IEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNT 189 (733)
Q Consensus 132 I~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~ 189 (733)
+..+-..+.. ....+..++..+..++.+....+..+..-...
T Consensus 120 ie~~~~~l~~----------------~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~ 161 (256)
T 3na7_A 120 IKRKSEKQED----------------LKKEMLELEKLALELESLVENEVKNIKETQQI 161 (256)
T ss_dssp HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655521 12455566666666666665555544443333
No 13
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=58.08 E-value=75 Score=27.75 Aligned_cols=31 Identities=3% Similarity=0.223 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 225 AIERLTIAIHKLREVKIQRMQKLQDLATTML 255 (733)
Q Consensus 225 tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~ 255 (733)
.++.....+..++.....-...+..+...+.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444444444444444443
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.53 E-value=2.5e+02 Score=31.19 Aligned_cols=126 Identities=9% Similarity=0.081 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 52 RRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQ 131 (733)
Q Consensus 52 ~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~q 131 (733)
+..|...+....+..+.++..+.++......+.... ......++++... +..++.+.+.+..+....+.+
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~-------~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPK-------DGLARSSDNLNKV---FTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------CSSSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccc-------cccCCHHHHHHHH---HHHHHhhhhhhHHHHHHHHHh
Confidence 445555555556667777788888877777666432 1123334433333 333333334444444444444
Q ss_pred HHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 004728 132 IEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKH 203 (733)
Q Consensus 132 I~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~ 203 (733)
++....++.. -.++.++++.+++..++...+=.++...+..+|.+|-..+.-.|..
T Consensus 532 ~~~~~~~~~~----------------~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 532 ADAKQKETED----------------LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hhhhhcchhh----------------HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4444433310 0134445555555555555555556666677777777777666543
No 15
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.07 E-value=74 Score=28.12 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q 004728 156 DLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHT 204 (733)
Q Consensus 156 dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~ 204 (733)
.+|.+.+..|+..|+.|+.|...=.+.+..+-.++-..+ |.-+|...
T Consensus 8 ~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~~~~ 54 (100)
T 1go4_E 8 LFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDYDQS 54 (100)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCCCTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccCCc
Confidence 348899999999999999999888888888777775554 54455443
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.76 E-value=1e+02 Score=42.34 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHH
Q 004728 156 DLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHK 235 (733)
Q Consensus 156 dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~ 235 (733)
.|-.++|.+++..+...+.+...-.+++.++...|..|-..+..--.+. . .+. .........|++-..++..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek----~-~L~---~e~~~~~~kl~rA~~Li~g 2081 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET----E-QIK---TESSKVKNKVDRSIALLDN 2081 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHH---HHHHHHHHHHHHHHHHHHh
Confidence 3455667777776666666665555555555555555544432110000 0 000 0111234567777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004728 236 LREVKIQRMQKLQDLATTMLELW 258 (733)
Q Consensus 236 LeeeK~~R~~kl~eL~~~I~eLW 258 (733)
|..+|..=.+.+..+..++..|-
T Consensus 2082 L~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2082 LNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHhcc
Confidence 88877766666666666655553
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.75 E-value=2.4e+02 Score=31.39 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHHH
Q 004728 159 LRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLRE 238 (733)
Q Consensus 159 ~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~Lee 238 (733)
.+.+.+++..+..|+.+...-.+.+..+...|......+........ ...+.+.+.+..+++
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~ 516 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA------------------RSSDNLNKVFTHLKE 516 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSS------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccC------------------CHHHHHHHHHHHHHh
Confidence 35777888888888888888888888888888888777766544321 123556666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 004728 239 VKIQRMQKLQDLATTM 254 (733)
Q Consensus 239 eK~~R~~kl~eL~~~I 254 (733)
..+....+++.....+
T Consensus 517 ~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 517 RQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhh
Confidence 6666666665555554
No 18
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=48.52 E-value=1.7e+02 Score=28.18 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhhhcccccccccCCCCCCcHHHHHH
Q 004728 219 MSISNDAIERLTIAIHKLREVKIQRMQKLQDLATTMLELWNLMDTPVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISY 298 (733)
Q Consensus 219 ~~LS~~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I~eLW~~L~ip~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~ 298 (733)
.+||++--++++...++.........+++...+.+|..|+.- ..++...|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a----------------------------~~~DeakI~a 117 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA----------------------------SSPDTAKINA 117 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------------------------SSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------------CCCCHHHHHH
Confidence 579999999999998888877766666666666666665542 2345677777
Q ss_pred HHHHHHHHHHHHH
Q 004728 299 VETEVSRLEELKT 311 (733)
Q Consensus 299 le~EV~RLeeLK~ 311 (733)
+..|+..|..-..
T Consensus 118 L~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 118 VAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765433
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.62 E-value=48 Score=40.78 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC
Q 004728 64 QLRQAIADSEADLAAICSAMGE 85 (733)
Q Consensus 64 ~L~qsIa~~~~El~~L~seLge 85 (733)
.+......++.++..|-..|++
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDE 939 (1080)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666654
No 20
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=43.74 E-value=2.8e+02 Score=28.37 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 004728 315 KELVLKKRLELEEICRNT 332 (733)
Q Consensus 315 KelI~k~R~ELeeLWdk~ 332 (733)
..+-..++..+++++..+
T Consensus 208 ~~~~~~~~qq~e~f~~~~ 225 (273)
T 3s84_A 208 AELGGHLDQQVEEFRRRV 225 (273)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444455555555554
No 21
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=43.02 E-value=4.6e+02 Score=30.62 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHHHHH
Q 004728 158 SLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIHKLR 237 (733)
Q Consensus 158 S~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~~Le 237 (733)
+...+..+....+.++.+...+...|..+......|.. .+.... . . -...++.|...-+.|.
T Consensus 402 dl~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~-~~~~~~---~----~----------I~~~~~~l~~~W~~L~ 463 (863)
T 1sjj_A 402 TLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNE-LDYYDS---P----S----------VNARCQKICDQWDNLG 463 (863)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH-TCCTTH---H----H----------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccH---H----H----------HHHHHHHHHHHHHHHH
Confidence 77888888888888998888877777766655555542 121100 0 0 1234666666666676
Q ss_pred HHHHHHHHHHHHHH
Q 004728 238 EVKIQRMQKLQDLA 251 (733)
Q Consensus 238 eeK~~R~~kl~eL~ 251 (733)
+.-..|..++++..
T Consensus 464 ~~~~~R~~~L~~~l 477 (863)
T 1sjj_A 464 ALTQKRREALERTE 477 (863)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665533
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.73 E-value=2.1e+02 Score=26.38 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004728 99 SLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEIL 140 (733)
Q Consensus 99 tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (733)
.|+.+|...+-.++.+.++..+..+++..++.++.+|-+++.
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777778888888888888888889988888887763
No 23
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=41.17 E-value=2.3e+02 Score=27.39 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 122 KKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEKSNRLKQVQD 185 (733)
Q Consensus 122 ~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~ 185 (733)
.+.+.+++.++.-+..+|...-. ..+ .+--..|..+.++|+.....+++.|..
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~l~-----~~~------Eelr~~L~Py~eelr~kl~~~~eeLr~ 157 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAMLG-----QST------EELRVRLASHLRKLRKRLLRDADDLQK 157 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-----CCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH-----HHH------HHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 56688888888888888843211 001 122235556666666666655554443
No 24
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.51 E-value=2.6e+02 Score=26.90 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=50.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHHHHHHH
Q 004728 97 AESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHELQKEK 176 (733)
Q Consensus 97 ~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~Lq~EK 176 (733)
...|..++..+..+|+.=|.-...+-..+.+++..|..|+.+|.....-.. =.......|+..|..|++++
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~---------k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE---------KVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999987777777777788999999999988843211000 00123345666666666666
Q ss_pred HHHH
Q 004728 177 SNRL 180 (733)
Q Consensus 177 ~~Rl 180 (733)
+...
T Consensus 135 a~~e 138 (168)
T 3o0z_A 135 NNLE 138 (168)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6554
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.05 E-value=1.3e+02 Score=37.00 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 228 RLTIAIHKLREVKIQRMQKLQDLA 251 (733)
Q Consensus 228 ~L~~~l~~LeeeK~~R~~kl~eL~ 251 (733)
.|+..+..|++++....+++.++-
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 26
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=37.67 E-value=8.7 Score=27.83 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=10.1
Q ss_pred hhcchhhhhhhh
Q 004728 708 EIEYSFEERRAG 719 (733)
Q Consensus 708 ~~~~~~~~~~~~ 719 (733)
..||||||.|+.
T Consensus 17 ~~E~s~eEllA~ 28 (36)
T 2i3s_B 17 DEEFNTEEILAM 28 (36)
T ss_dssp SCCCCHHHHHHH
T ss_pred CcEecHHHHHHH
Confidence 479999999973
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.12 E-value=68 Score=34.65 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 224 DAIERLTIAIHKLREVKIQRMQKLQDLATTM 254 (733)
Q Consensus 224 ~tL~~L~~~l~~LeeeK~~R~~kl~eL~~~I 254 (733)
+..+.|+..+.-|++.-...+..+.-|+..|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l 143 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNV 143 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555555555544444444433333333
No 28
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=36.61 E-value=9.3 Score=29.90 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=9.8
Q ss_pred hhcchhhhhhhh
Q 004728 708 EIEYSFEERRAG 719 (733)
Q Consensus 708 ~~~~~~~~~~~~ 719 (733)
..||||||.||.
T Consensus 24 ~~E~sfeEllA~ 35 (54)
T 2i3t_B 24 RLEFSLEEVLAI 35 (54)
T ss_dssp -CBCCHHHHHHH
T ss_pred cceeeHHHHHHH
Confidence 369999999984
No 29
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=36.06 E-value=3.5e+02 Score=27.21 Aligned_cols=94 Identities=7% Similarity=0.163 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCCCccCcccccCCCCCCHHHHHHHHHHHHH
Q 004728 98 ESLKEELRRILPQVEEMRKRKSDRKKQFVDVL------EQIEMIKSEILGSTVYISSKTVVDDADLSLRKLEEFHRELHE 171 (733)
Q Consensus 98 ~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~------~qI~~Lc~eL~g~~~~~~~~~~vde~dLS~e~LeeL~~~L~~ 171 (733)
..+...+..+....+.|...-.+|...+.+.. .....+..=|....... ...+..-+...+..+....+.
T Consensus 79 ~~i~~~l~~l~~~w~~L~~~~~~R~~~Le~~l~l~~f~~~~~~l~~Wl~~~e~~l----~~~~~g~d~~~v~~l~~~~~~ 154 (326)
T 3kbt_A 79 EQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVA----SSPEMGQDFDHVTLLRDKFRD 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccccCCCCHHHHHHHHHHHHH
Confidence 34666666666666666665555555544332 11112221111100000 001112246677777777777
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH
Q 004728 172 LQKEKSN-RLKQVQDHLNTLSSLCS 195 (733)
Q Consensus 172 Lq~EK~~-Rl~kv~~l~~~I~~L~~ 195 (733)
++.+... +...|..+......|..
T Consensus 155 f~~el~~~~~~~v~~l~~~~~~L~~ 179 (326)
T 3kbt_A 155 FARETGAIGQERVDNVNAFIERLID 179 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7777665 55555554444444443
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=36.00 E-value=2.1e+02 Score=25.63 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHhHhCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 13 TTCGSLLYELQIIWDEVGETDTDRDKM---LLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 13 t~c~~~l~eLq~IWdEIG~~e~eRd~~---l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
+.|..+|..-+.-.+++......++.. +.-|++ =.++|+.=..-+...|+++...+..+..+++.|...+.
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLka-Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKA-QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345666666677777776666655542 222333 33678877777777888888888888888888876654
No 31
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=35.06 E-value=4.1e+02 Score=27.63 Aligned_cols=170 Identities=13% Similarity=0.003 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHHHHhHhCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-
Q 004728 12 ETTCGSLLYELQIIWDEVGETDTDR----DKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEAD---LAAICSAM- 83 (733)
Q Consensus 12 ~t~c~~~l~eLq~IWdEIG~~e~eR----d~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~E---l~~L~seL- 83 (733)
...|.+.+.++..+++.+|...... ..-+.++++.+..++. .|.+....+.+|...+..++.. +..|.--.
T Consensus 62 ~~~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~-~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~ 140 (357)
T 3rrk_A 62 LKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVAS-RAEVLGKERAALEEEIQTIELFGKAAEKLAALAH 140 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCSSCCCSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Confidence 4689999999999999998532111 0013444444333333 4455555677888888888888 77775433
Q ss_pred CCCCccccccccccccH--HHHHHHHHHHHHHHHHH-HH---HHHHH--------HHHHHHHHHHHHHHhcCCCCccCcc
Q 004728 84 GERPVHIRQSDQTAESL--KEELRRILPQVEEMRKR-KS---DRKKQ--------FVDVLEQIEMIKSEILGSTVYISSK 149 (733)
Q Consensus 84 ge~p~~~~~~e~~~~tL--keqL~~i~~~LEeLrk~-K~---eR~~e--------f~~l~~qI~~Lc~eL~g~~~~~~~~ 149 (733)
+.+ .... ..-..|++ .+.+..+...|...... .. ..-.. -.....++.++|..++... +.
T Consensus 141 ~ld-~~~~-~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~-~~--- 214 (357)
T 3rrk_A 141 GLD-ESPR-LGVIPFLVAKPEELEAVRKALQEALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAE-LR--- 214 (357)
T ss_dssp TTT-TCTT-EEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCB-CC---
T ss_pred cCC-ccce-eeeeeEEecChhhHHHHHHHHHHhcCCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCee-cc---
Confidence 332 1111 00001244 44445554444332110 00 00000 0234567788888775432 11
Q ss_pred cccCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 150 TVVDDAD--LSLRKLEEFHRELHELQKEKSNRLKQVQDHLNT 189 (733)
Q Consensus 150 ~~vde~d--LS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~ 189 (733)
.++... .-.+.+.+++.+++.++.+...-.+++..+...
T Consensus 215 -~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 215 -FPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp -CCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 345778888888888888877665555555444
No 32
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=34.53 E-value=1.8e+02 Score=24.41 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCC-----CcHHHHHHHHHHHHHHHHHHHh
Q 004728 318 VLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAM-----DTANVLEQIELQIAKVKEEAFS 376 (733)
Q Consensus 318 I~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~-----~~eeLLe~~E~EI~rLKe~~~s 376 (733)
|+..|.||+-+-+...+|-.. | =.|..|+. .+...|++++.||.+||+...+
T Consensus 14 IE~~q~eI~~lL~~AkiSl~D-----y--ImiKRGS~DmPe~L~~~~~~QideeV~~LKe~Ida 70 (83)
T 1zke_A 14 IEDSQNEIEMLLKLANLSLGD-----F--IEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 70 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHHH-----H--HHHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-----H--hheeccCccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999988532 1 13445543 4677899999999999987654
No 33
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.85 E-value=2.4e+02 Score=30.55 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 39 MLLELEQECLEVYRRKVD--QANRCRAQLRQAIADSEADLAAICSA 82 (733)
Q Consensus 39 ~l~~leqe~l~vy~~kVd--ee~~~r~~L~qsIa~~~~El~~L~se 82 (733)
.+.++.+.+-.++.+... ++.+..+-|.+.|.+.++.+..+...
T Consensus 374 al~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 374 ALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 444555555555555443 35556666788888888888777544
No 34
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.20 E-value=2.5e+02 Score=25.15 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 47 CLEVYRRKVDQANRCRAQLRQAIADSEADLAAICS 81 (733)
Q Consensus 47 ~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~s 81 (733)
.+..|+..+......++.|...|.+...=++.|-.
T Consensus 9 ~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 9 QLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888888888888877777766666644
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.64 E-value=2.7e+02 Score=24.88 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 48 LEVYRRKVDQANRCRAQLRQAIADSEADLAAI 79 (733)
Q Consensus 48 l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L 79 (733)
+.-+|+.|+.....+++|.-.|..++..+..+
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655666555555555444444
No 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.50 E-value=2.1e+02 Score=30.87 Aligned_cols=85 Identities=11% Similarity=0.160 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 004728 99 SLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVVDDADLS-LRKLEEFHRELHELQKEKS 177 (733)
Q Consensus 99 tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~vde~dLS-~e~LeeL~~~L~~Lq~EK~ 177 (733)
+|.++-..+...+++|+....+-.+...+...-+..+...|... +. ...+.+-. .+-.++|+.++..|+....
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~--~~----q~~dndn~~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGD--FA----KANNNDNTFKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HH----hhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444466777777777766665555555555555555444221 10 11122222 2344466666666665555
Q ss_pred HHHHHHHHHHHH
Q 004728 178 NRLKQVQDHLNT 189 (733)
Q Consensus 178 ~Rl~kv~~l~~~ 189 (733)
.-+..+..|+..
T Consensus 131 ~q~~~ir~Lq~~ 142 (390)
T 1deq_A 131 EQVQRINLLQKN 142 (390)
T ss_pred HHhHHHHHHHHH
Confidence 544444444333
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.57 E-value=4.7e+02 Score=29.51 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCccccc--CCCCCCHHHHHHHHHHHHH
Q 004728 100 LKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIKSEILGSTVYISSKTVV--DDADLSLRKLEEFHRELHE 171 (733)
Q Consensus 100 LkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~g~~~~~~~~~~v--de~dLS~e~LeeL~~~L~~ 171 (733)
|+.++..|+..|..--....-....|.++..+|++|-..|.....+ ...++. -+.-+-++-++.++.+|++
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs-CKgsCsr~~~~~vd~~sY~~~QKQLeQ 187 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS-CRGSCSRALAREVDLKDYEDQQKQLEQ 187 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGTBSCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccchheeecchHHHHHHHHHHHH
Confidence 4444444444443222333333444555555556555555321110 000111 1234456777777766554
No 38
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.01 E-value=2.8e+02 Score=23.92 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 49 EVYRRKVDQANRCRAQLRQAIADSEADLAAI 79 (733)
Q Consensus 49 ~vy~~kVdee~~~r~~L~qsIa~~~~El~~L 79 (733)
+-++..+.+....+..+...|..+...+..+
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555666666666666666544
No 39
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=28.67 E-value=2.9e+02 Score=26.77 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 53 RKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVD 127 (733)
Q Consensus 53 ~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~ 127 (733)
+.-......|.++.+.+.++++.|.-...+|...- ....-.++ ..+.|..++|+.+-.+++.+|..
T Consensus 92 ~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l------~~~~Eelr---~~L~Py~eelr~kl~~~~eeLr~ 157 (191)
T 1nfn_A 92 RLSKELQAAQARLGADMEDVCGRLVQYRGEVQAML------GQSTEELR---VRLASHLRKLRKRLLRDADDLQK 157 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHH
Confidence 34445566778888888888888887777765321 11122355 46678889999988888776654
No 40
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.57 E-value=4e+02 Score=25.56 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccccCcCCCCCCHHHHHHHHHHHH
Q 004728 155 ADLSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCSVLGIDFKHTVSDIHPSFCENEGSMSISNDAIERLTIAIH 234 (733)
Q Consensus 155 ~dLS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~~Lg~d~~~~i~ev~psl~e~~~s~~LS~~tL~~L~~~l~ 234 (733)
.+||.++-..++...++.+.+...-.+++...+.+++.|+.- .+.+...|.+|..++.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a----------------------~~~DeakI~aL~~Ei~ 123 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA----------------------SSPDTAKINAVAKEME 123 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------------------SSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------CCCCHHHHHHHHHHHH
Confidence 589999999999998888888777777777777766655421 1234567777777777
Q ss_pred HHHHHH
Q 004728 235 KLREVK 240 (733)
Q Consensus 235 ~LeeeK 240 (733)
.|+...
T Consensus 124 ~Lr~qL 129 (175)
T 3lay_A 124 SLGQKL 129 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 41
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=28.33 E-value=4.6e+02 Score=26.14 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhc
Q 004728 247 LQDLATTMLELWNLM 261 (733)
Q Consensus 247 l~eL~~~I~eLW~~L 261 (733)
++++..++..+|+.+
T Consensus 222 ~e~~~~~l~~~~e~~ 236 (243)
T 2a01_A 222 LESFKVSFLSALEEY 236 (243)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466677777777643
No 42
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=28.03 E-value=88 Score=24.03 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 004728 294 DFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRN 331 (733)
Q Consensus 294 ~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk 331 (733)
+-|-.++.|+++|+..|...+..|-...+.+|..+-|.
T Consensus 6 EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~ 43 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQ 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 45778999999999999999988888888888776553
No 43
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=27.63 E-value=2.2e+02 Score=25.68 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=54.3
Q ss_pred hhhhHHHHHHHHHHHHhHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q 004728 11 VETTCGSLLYELQIIWDEVGETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERPVHI 90 (733)
Q Consensus 11 ~~t~c~~~l~eLq~IWdEIG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p~~~ 90 (733)
++..+.++|.++..+.+-.++...--...-.+.++|..++|...=.-+. .+++|+..|=...|..-.|+
T Consensus 16 ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~-----------~LRkEIK~lDeNiG~~lLPI 84 (115)
T 4gwp_A 16 IETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTT-----------QLRKEIQLLDENVGTRLLPI 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhccCceEecc
Confidence 6788889999999988877652222223345678888889986544333 34456666666677665555
Q ss_pred cccccccccHHHHHHHHHHHHHHHH
Q 004728 91 RQSDQTAESLKEELRRILPQVEEMR 115 (733)
Q Consensus 91 ~~~e~~~~tLkeqL~~i~~~LEeLr 115 (733)
. .++..+.+-. ..+..++++|.
T Consensus 85 n-VdkKa~~~~~--~Kl~eqi~~L~ 106 (115)
T 4gwp_A 85 N-VNKKALGQDT--EKMEEQLDLLS 106 (115)
T ss_dssp S-SCCCCCTHHH--HHHHHHHHHHH
T ss_pred c-cccccccccH--HHHHHHHHHHH
Confidence 3 5554444332 34444444443
No 44
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.31 E-value=56 Score=25.41 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHH
Q 004728 361 EQIELQIAKVKEEAF-SRKEILERVE 385 (733)
Q Consensus 361 e~~E~EI~rLKe~~~-srk~IlelVe 385 (733)
..||.||..+...|. .|+||++.|+
T Consensus 24 ~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 24 PMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 478999999988776 6799999986
No 45
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=27.25 E-value=1.7e+02 Score=27.92 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 004728 58 ANRCRAQLRQAIADSEADLAAICSAMG 84 (733)
Q Consensus 58 e~~~r~~L~qsIa~~~~El~~L~seLg 84 (733)
....|.+|.+.+.+++..+.-.+.++.
T Consensus 80 ~~~Lr~~l~kdlee~r~~l~P~~~e~~ 106 (185)
T 3r2p_A 80 TEGLRQEMSKDLEEVKAKVQPYLDDFQ 106 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344566677777777777766665554
No 46
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.43 E-value=83 Score=20.76 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004728 60 RCRAQLRQAIADSEADLAAI 79 (733)
Q Consensus 60 ~~r~~L~qsIa~~~~El~~L 79 (733)
..-++|.|.|+.++-|++.|
T Consensus 7 qknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 34568899999999998876
No 47
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.41 E-value=3.4e+02 Score=23.30 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=14.8
Q ss_pred HHHHHHHHHhHh-CCChHHHHHHHHHHHH
Q 004728 18 LLYELQIIWDEV-GETDTDRDKMLLELEQ 45 (733)
Q Consensus 18 ~l~eLq~IWdEI-G~~e~eRd~~l~~leq 45 (733)
+...+...-+.+ +.+.++|...+.+++.
T Consensus 13 ~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~ 41 (97)
T 3onj_A 13 TLEQAKASLAEAPSQPLSQRNTTLKHVEQ 41 (97)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 333333333333 3566677777666654
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.15 E-value=1.3e+02 Score=23.39 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004728 111 VEEMRKRKSDRKKQFVDVLEQIEMIKSEIL 140 (733)
Q Consensus 111 LEeLrk~K~eR~~ef~~l~~qI~~Lc~eL~ 140 (733)
+|.|+.+..+-..++..|..+++.+|+.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444545556666777777777663
No 49
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=23.99 E-value=4.5e+02 Score=24.66 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 63 AQLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELRRILPQVEEMRKRKSDRKKQFVDVLEQIEMIK 136 (733)
Q Consensus 63 ~~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~~i~~~LEeLrk~K~eR~~ef~~l~~qI~~Lc 136 (733)
.++-..++.++-+...+..+..-..... ...-..+++..++.+++. ++.+|......+..++..+-
T Consensus 39 ~q~d~elqQLefq~kr~~~e~~~q~~~~-----~~p~~~~qi~~iq~q~~~---ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 39 ANADQQLAQLEQEGQTVVDQVRRQSANP-----LDPRVQEQVANIQQQVAG---KRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCT-----TCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC-----CChhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555554211110 013356667777777765 56666666666677777666
No 50
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.94 E-value=3.6e+02 Score=23.41 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 004728 99 SLKEELRRILPQVEEMRK 116 (733)
Q Consensus 99 tLkeqL~~i~~~LEeLrk 116 (733)
.+..++..++..|+.|++
T Consensus 82 ~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 82 PMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455555666666665544
No 51
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=23.29 E-value=1.8e+02 Score=25.04 Aligned_cols=66 Identities=20% Similarity=0.059 Sum_probs=44.8
Q ss_pred HHHHHHHHhHhCCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 004728 19 LYELQIIWDEVGETDTD---RDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGERP 87 (733)
Q Consensus 19 l~eLq~IWdEIG~~e~e---Rd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge~p 87 (733)
+.+||.--..+|++-.. -...+..+.+|+-++-..... ..++.+..+|.+..--+..||..+|+++
T Consensus 17 l~~lq~~a~~~gfdw~~~~~~~~~~~kl~EE~gEl~eai~~---~~~~~i~eELgDvLf~lv~lA~~lgiD~ 85 (95)
T 1vmg_A 17 LKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLS---NNLDSIQEELADVIAWTVSIANLEGIDI 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 34666666777766553 245556666666655543322 2356788999999999999999999865
No 52
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.11 E-value=2.9e+02 Score=23.04 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=40.9
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004728 29 VGETDTDRDKMLLELEQECLEVYRRKVDQANRCRAQLRQAIADSEADLAAICSAMGE 85 (733)
Q Consensus 29 IG~~e~eRd~~l~~leqe~l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L~seLge 85 (733)
+.+.+.+-+.+|.+||.. +.+..+.|++.+..-.+-.+.|..++.++..|...|..
T Consensus 5 ~~~~~~~le~Ri~~LE~k-lAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 5 LSPRDQELEARLVELETR-LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp ---CCTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777888853 36677889999988888888999999999988887764
No 53
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=22.78 E-value=1.5e+02 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHhHHHHH-HHHHhcCchhhccCCC
Q 004728 378 KEILERVEKWLGACEEECW-LEEYNRDDNRYNAGKG 412 (733)
Q Consensus 378 k~IlelVekw~~l~eEe~~-LEe~skDpnRy~nrrG 412 (733)
.+|=.+|.||..+|.+..| |-...++ |++.-||
T Consensus 39 ~eL~~LI~KWr~asq~aaeeLf~~~~~--rv~rMGG 72 (122)
T 3viq_A 39 KDLQTLIQKWKNAAQQAAEVLFKPMAE--RIRLAGG 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccc
Confidence 5678999999999998877 4444443 7764444
No 54
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=22.63 E-value=3.7e+02 Score=23.14 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCCcchhhhhHHHHHHHHHHHHhH
Q 004728 5 NDPLLQVETTCGSLLYELQIIWDE 28 (733)
Q Consensus 5 ~~~~~~~~t~c~~~l~eLq~IWdE 28 (733)
.|||-.+..-|.+.|..|+.+-..
T Consensus 5 ~DPF~~V~~D~~~ql~~l~~~~~~ 28 (95)
T 2c5k_T 5 EDPFQQVVKDTKEQLNRINNYITR 28 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999999999999755
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.34 E-value=3e+02 Score=23.26 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 51 YRRKVDQANRCRAQLRQAIADSEADLAAICS 81 (733)
Q Consensus 51 y~~kVdee~~~r~~L~qsIa~~~~El~~L~s 81 (733)
+|+.|+.....+++|.-.|..++..+..+..
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~ 35 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLRE 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555666666555555555554433
No 56
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.97 E-value=4.2e+02 Score=23.09 Aligned_cols=48 Identities=17% Similarity=0.453 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccccccccHHHHHH-HHHHHHHHHHHHHH
Q 004728 64 QLRQAIADSEADLAAICSAMGERPVHIRQSDQTAESLKEELR-RILPQVEEMRKRKS 119 (733)
Q Consensus 64 ~L~qsIa~~~~El~~L~seLge~p~~~~~~e~~~~tLkeqL~-~i~~~LEeLrk~K~ 119 (733)
.|++.+..-...+..+|..||-.- ...-|+..+. .+.+....|.++-+
T Consensus 10 ~li~t~s~niq~l~k~~~qlGTkr--------D~~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 10 NLIETFAEQSRVLEKECTKIGSKR--------DSKELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSS--------CCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc--------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666669999999999542 2455887777 77777777776544
No 57
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.89 E-value=3.2e+02 Score=28.47 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCccccccccccc--cHHHHHHHHHHHHHHHHHHHHH
Q 004728 73 EADLAAICSAMGERPVHIRQSDQTAE--SLKEELRRILPQVEEMRKRKSD 120 (733)
Q Consensus 73 ~~El~~L~seLge~p~~~~~~e~~~~--tLkeqL~~i~~~LEeLrk~K~e 120 (733)
..++..+|..+|...+..+ + ..+ +-.+.+..+..+++++..+..+
T Consensus 198 ~~~v~~il~s~~f~~~~~p--~-~~~~~~p~~~l~~l~~~i~~l~~~l~~ 244 (357)
T 3rrk_A 198 LEAARSSLSRLGLAELRFP--G-AYGAMPLGKAAARMKERARLAPEELVG 244 (357)
T ss_dssp HHHHHHHHHTTTCCBCCCC--G-GGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeccCC--c-ccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888887766553 1 123 5566566666666555554333
No 58
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.07 E-value=5.3e+02 Score=23.99 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 004728 292 SVDFISYVETEVSRLEELKTSKMKELVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAMDTANVLEQIELQIAKVK 371 (733)
Q Consensus 292 S~~~Ie~le~EV~RLeeLK~~~mKelI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~~~eeLLe~~E~EI~rLK 371 (733)
+...++.+..++.++..-=. .|+.+|...+--+..+|..= ...+. .--++|...|.-+..|+
T Consensus 52 ~~~ql~~v~kdi~~a~~eL~-~m~~~i~~ekP~WKKiWE~E---------L~~Vc--------eEQqfl~~QedL~~DL~ 113 (141)
T 3okq_A 52 AKKKLETVSKDLENAQADVL-KLQEFIDTEKPHWKKTWEAE---------LDKVC--------EEQQFLTLQEELILDLK 113 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---------HHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchhHHHHHHH---------HHHHH--------HHHHHHHHHHHHHHHHH
Confidence 45788888888888776543 48888888888888888631 11111 12455667777888999
Q ss_pred HHHHhhhHHHHHHHHHHHHhHHHHHHHHHhcCchh
Q 004728 372 EEAFSRKEILERVEKWLGACEEECWLEEYNRDDNR 406 (733)
Q Consensus 372 e~~~srk~IlelVekw~~l~eEe~~LEe~skDpnR 406 (733)
+-+..-.+.|.+|+++- ++..++|+|
T Consensus 114 eDL~ka~etf~lVeq~~---------~eq~k~~~~ 139 (141)
T 3okq_A 114 EDLGKALETFDLIKLCC---------EEQEKNPSR 139 (141)
T ss_dssp HHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHhcccC
Confidence 99999999999999883 445677776
Done!