Query 004728
Match_columns 733
No_of_seqs 276 out of 543
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 03:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004728.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004728hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 35.9 74 0.0054 26.4 9.0 32 48-79 10-41 (133)
2 d1yf2a2 d.287.1.2 (A:221-425) 29.0 31 0.0022 29.7 5.3 41 264-318 157-197 (205)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 22.7 1.9E+02 0.014 23.6 10.5 39 157-195 92-130 (133)
4 d1ydxa2 d.287.1.2 (A:194-374) 22.7 47 0.0034 28.3 5.3 41 264-318 137-177 (181)
5 d1ydxa1 d.287.1.2 (A:1-193) Bi 21.7 44 0.0032 28.7 4.9 40 265-318 143-182 (193)
6 d1ykhb1 a.252.1.1 (B:2-130) RN 20.7 1.3E+02 0.0096 25.3 7.6 21 63-83 59-79 (129)
7 d1zkea1 a.30.6.1 (A:1-79) Hypo 20.1 1.8E+02 0.013 22.2 8.0 53 317-376 11-68 (79)
8 d1ivsa1 a.2.7.3 (A:797-862) Va 17.9 1.7E+02 0.012 21.3 6.8 31 61-91 5-35 (66)
9 d1yf2a1 d.287.1.2 (A:1-220) Bi 17.3 73 0.0053 27.9 5.5 42 264-319 167-208 (220)
10 d1gm5a1 a.24.21.1 (A:7-105) Re 16.9 30 0.0022 28.3 2.1 49 371-440 44-92 (99)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.88 E-value=74 Score=26.40 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 48 LEVYRRKVDQANRCRAQLRQAIADSEADLAAI 79 (733)
Q Consensus 48 l~vy~~kVdee~~~r~~L~qsIa~~~~El~~L 79 (733)
++.|+..++........+...++++..-++.|
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L 41 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666776666667777776666555544
No 2
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=29.01 E-value=31 Score=29.67 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=31.0
Q ss_pred CHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004728 264 PVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELV 318 (733)
Q Consensus 264 p~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI 318 (733)
|.+||+.|......+ ++.|+.++..++.|+++|...|..++
T Consensus 157 ~~~eQ~~I~~~l~~i--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 197 (205)
T d1yf2a2 157 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 197 (205)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788787765433 36788899999999999988887764
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.72 E-value=1.9e+02 Score=23.60 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004728 157 LSLRKLEEFHRELHELQKEKSNRLKQVQDHLNTLSSLCS 195 (733)
Q Consensus 157 LS~e~LeeL~~~L~~Lq~EK~~Rl~kv~~l~~~I~~L~~ 195 (733)
.-.++++.++..++.|.++......++..+...+..+..
T Consensus 92 ~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~ 130 (133)
T d1fxkc_ 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666777766666666666666666666543
No 4
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=22.71 E-value=47 Score=28.29 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=32.9
Q ss_pred CHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004728 264 PVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELV 318 (733)
Q Consensus 264 p~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI 318 (733)
|.+||+.|.+....+ ++.|+.++.+++.|+++|...|++++
T Consensus 137 ~l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 137 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888898876654 36889999999999999999887663
No 5
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=21.70 E-value=44 Score=28.73 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=32.7
Q ss_pred HHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004728 265 VEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELV 318 (733)
Q Consensus 265 ~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI 318 (733)
.+||+.+......+ ++.|+.++.+++.|+++|...|++++
T Consensus 143 ~~eQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~~~~ll~~lf 182 (193)
T d1ydxa1 143 KNEQHAIANTLSVF--------------DERLENLASLIEINRKLRDEYAHKLF 182 (193)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788887765543 36889999999999999999998886
No 6
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.67 E-value=1.3e+02 Score=25.31 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004728 63 AQLRQAIADSEADLAAICSAM 83 (733)
Q Consensus 63 ~~L~qsIa~~~~El~~L~seL 83 (733)
..+-..|....+.|..|.+.|
T Consensus 59 ~elA~dii~kakqId~LI~sL 79 (129)
T d1ykhb1 59 DELSTDIILKTRQINKLIDSL 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhHHHHHHhC
Confidence 456777888889999999998
No 7
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=20.06 E-value=1.8e+02 Score=22.24 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcCCC-----CcHHHHHHHHHHHHHHHHHHHh
Q 004728 317 LVLKKRLELEEICRNTHMVPENDHSIEYAIEAIESGAM-----DTANVLEQIELQIAKVKEEAFS 376 (733)
Q Consensus 317 lI~k~R~ELeeLWdk~~~s~eeR~aF~~~~~~i~sg~~-----~~eeLLe~~E~EI~rLKe~~~s 376 (733)
=|+..|.+|+-+-+..-+|-.. | + .|..|+. .+...|++++.||.+||+...+
T Consensus 11 ~IE~~q~eI~~lL~~AkiS~vD-----y-I-mIKRGS~DmPe~l~~~~l~qid~ev~kLK~~Ida 68 (79)
T d1zkea1 11 DIEDSQNEIEMLLKLANLSLGD-----F-I-EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHH-----H-H-HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhH-----h-h-eeecCcccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999998888432 1 1 2444543 4677899999999999998764
No 8
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=17.92 E-value=1.7e+02 Score=21.34 Aligned_cols=31 Identities=6% Similarity=-0.019 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccc
Q 004728 61 CRAQLRQAIADSEADLAAICSAMGERPVHIR 91 (733)
Q Consensus 61 ~r~~L~qsIa~~~~El~~L~seLge~p~~~~ 91 (733)
.+++|...|+.+..++..+-.-|+=+.|...
T Consensus 5 E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~k 35 (66)
T d1ivsa1 5 WRRRQEKRLKELLALAERSQRKLASPGFREK 35 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCChHHHHh
Confidence 4678999999999999999999998887543
No 9
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=17.28 E-value=73 Score=27.91 Aligned_cols=42 Identities=29% Similarity=0.496 Sum_probs=32.0
Q ss_pred CHHHHHHhHhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004728 264 PVEEQQAFQSVTCNIAASEHEITEPNTLSVDFISYVETEVSRLEELKTSKMKELVL 319 (733)
Q Consensus 264 p~eEr~~F~~~~~~i~aSe~e~t~~~~LS~~~Ie~le~EV~RLeeLK~~~mKelI~ 319 (733)
|.+||+.|......+ .+.++..+.+++.|+++|...|.+++.
T Consensus 167 p~~eQ~~I~~~l~~i--------------~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467888887765543 367888889999999999888887763
No 10
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=16.90 E-value=30 Score=28.29 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHHHHHHhcCchhhccCCCCccchHHHHHHHHHhhhhhHHHHHHHHH
Q 004728 371 KEEAFSRKEILERVEKWLGACEEECWLEEYNRDDNRYNAGKGAHLTLKRAEKARSLVNKLPGMVEALASK 440 (733)
Q Consensus 371 Ke~~~srk~IlelVekw~~l~eEe~~LEe~skDpnRy~nrrGah~~LlreEK~Rk~v~KLPklee~L~~k 440 (733)
++....+.+|++++.++-+-.. -=+| +.+|+++++|++.|.|++.++..
T Consensus 44 dDpLlen~el~~kLqeF~~Yi~------------------~~~~---Lp~eR~~kRvk~~~gMIerfR~~ 92 (99)
T d1gm5a1 44 DDPLLENKDLEEKLQAFLDYVK------------------EIPN---LPEARKRYRIQKSLEMIEKLRSW 92 (99)
T ss_dssp CCGGGGCHHHHHHHHHHHHHHT------------------TSSS---SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhcCHHHHHHHHHHHHHHH------------------Hhcc---CCHHHHHHHHhccHHHHHHHHHH
Confidence 3555666777777776643221 1122 46899999999999999877653
Done!