BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004729
(733 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 20/113 (17%)
Query: 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL----- 526
L L V+Q + G IS + +LEV+E D V LP+L IR+
Sbjct: 39 LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-------VFSNLPKLHEIRIEKANN 91
Query: 527 ---VHCRKFADL-NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLT 575
++ F +L NL+ +++S+ + + +H+I +SLQK+ L Q+N+
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI----HSLQKVLLDIQDNIN 140
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 47/221 (21%)
Query: 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL----- 526
L L V+Q + G IS + +LEV+E D V LP+L IR+
Sbjct: 39 LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-------VFSNLPKLHEIRIEKANN 91
Query: 527 ---VHCRKFADL-NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENL-------- 574
++ F +L NL+ +++S+ + + +H+I +SLQK+ L Q+N+
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI----HSLQKVLLDIQDNINIHTIERN 147
Query: 575 ---------TSLALQCQCLQEVDLTDCESLTNSVCEV-FSDGGGCPMLKSLVLDNCEGLT 624
L L +QE+ +C + E+ SD L + V G
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIH--NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205
Query: 625 VVRFCSTSLVSLSLVGCRAITALEL-------KCPILEKVC 658
++ T + SL G + L K P LEK+
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLV 246
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 117/275 (42%), Gaps = 28/275 (10%)
Query: 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRY 286
L D+LL +FS L +L + + VC++W ++ E W+ L+ + + DV R
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH----PDVTGRL 67
Query: 287 PNATEVNIYGAPAIHL--LVMKAVSLLRNLEALTLGRGQLGDAFFHA-LADCSMLKSLNV 343
+ V + P + + + S R ++ + L + + H L+ CS L++L++
Sbjct: 68 L-SQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125
Query: 344 NDATLGNGVQEIPINHDQLRRLEITKCR------VMRVSIRCPQLEHLSLKR-SNMAQAV 396
L + + + L RL ++ C + + C +L+ L+L + +
Sbjct: 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185
Query: 397 LNCPLLHL------LDIASCHK-LSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL 449
+ + H+ L+++ K L + + CP L LD+S+ + ++ +E
Sbjct: 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-F 244
Query: 450 SCANLRILNSSYC----PNISLESVRLPMLTVLQL 480
L+ L+ S C P LE +P L LQ+
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 25/138 (18%)
Query: 375 VSIRCPQ-------LEHLS---LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATS 424
++ RCP+ EH S ++ +++ +V+ LH + ++ C KL + ++ S
Sbjct: 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRLS 131
Query: 425 CP---------QLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPML 475
P L L++S CS S+ +L+ + SC+ L LN S+C + + + V++ +
Sbjct: 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV- 190
Query: 476 TVLQLHSCEGITSASMAA 493
H E IT +++
Sbjct: 191 ----AHVSETITQLNLSG 204
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 33/257 (12%)
Query: 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL--------NFENRKISVEQ 278
L D+LL +FS L +L + + VC++W ++ E W+ L + N I V
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVIEVST 71
Query: 279 FEDVCQRYPNATEVNIYGA----PAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALAD 334
+ + +++ G P ++ L + + NL + G + A L+
Sbjct: 72 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEF--ALQTLLSS 128
Query: 335 CSMLKSLNVN------DATLGNGVQEIPINHDQLR----RLEITKCRVMRVSIRCPQLEH 384
CS L LN++ + + V + QL R + K + + RCP L H
Sbjct: 129 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 188
Query: 385 LSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCV 439
L L S M Q L L ++ C+ + + L P L++L + V
Sbjct: 189 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQV--FGIV 245
Query: 440 SDESLREIALSCANLRI 456
D +L+ + + +L+I
Sbjct: 246 PDGTLQLLKEALPHLQI 262
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 382 LEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP---------QLESLD 432
L+ ++ +++ +V+ LH + ++ C KL + ++ S P L L+
Sbjct: 52 LDEFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 110
Query: 433 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 492
+S CS S+ +L+ + SC+ L LN S+C + + + V++ + H E IT +++
Sbjct: 111 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV-----AHVSETITQLNLS 165
Query: 493 A 493
Sbjct: 166 G 166
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265
L +L V SFL+ DL +AA CR WR + WR
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 542 LSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCE 601
++ + VS L+R+N +N++ KL L + LT L L E+D+T LT C
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCS 241
Query: 602 VFS----DGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL 649
V D L +L + L + +T L+ GCR I L++
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV 293
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 314 LEALTLGRGQLGDAF--FHALADCSMLKSLNVNDATL---GNGVQEIPINHDQLRRL--- 365
L +L L R L +L CS LK LNV+ TL G + +N ++ L
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 366 EITKCRVMR--VSIRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLA 421
I+ V+ +S C +L+HL++ + ++ V C L LD++S + S L
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS-NNFSTGIPFLG 220
Query: 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 460
C L+ LD+S D S R I+ +C L++LN S
Sbjct: 221 --DCSALQHLDISGNKLSGDFS-RAIS-TCTELKLLNIS 255
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 314 LEALTLGRGQLGDAF--FHALADCSMLKSLNVNDATL---GNGVQEIPINHDQLRRL--- 365
L +L L R L +L CS LK LNV+ TL G + +N ++ L
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 366 EITKCRVMR--VSIRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLA 421
I+ V+ +S C +L+HL++ + ++ V C L LD++S + S L
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS-NNFSTGIPFLG 217
Query: 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 460
C L+ LD+S D S R I+ +C L++LN S
Sbjct: 218 --DCSALQHLDISGNKLSGDFS-RAIS-TCTELKLLNIS 252
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 343 VNDATLGNGVQEIPINHDQLRR------------LEITKCRVMRVSIRCPQLEHLSLKRS 390
+ D L NGV+ + I +LRR L ++ ++R L ++
Sbjct: 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478
Query: 391 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC-SCVSDESLREIAL 449
+ + CP L L++ C S+ AI A T P L L + + ++ + L ++A
Sbjct: 479 GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537
Query: 450 SCANLRILNSSYCPNIS 466
N+ ++ S P ++
Sbjct: 538 PYWNIELIPSRRVPEVN 554
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 229 DDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 267
D + + S+LD LC A +VC++W ++ W+ L
Sbjct: 20 DHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 15/180 (8%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNV--NDATLGNGVQEIPINHDQLRRLEIT 368
L++L+ LT + G+AF + D L+ L++ N + + L+ L+++
Sbjct: 324 LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 369 KCRVMRVS---IRCPQLEHLSLKRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAIRL 420
V+ +S + QLEHL + SN+ Q L+ L LDI+ H + A
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNG 439
Query: 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQL 480
LE L M+ S + L +I NL L+ S C L L+ LQ+
Sbjct: 440 IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 17/220 (7%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNV--NDATLGNGVQEIPINHDQLRRLEIT 368
L++L+ LT + G+AF + D L+ L++ N + + L+ L+++
Sbjct: 324 LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 369 KCRVMRVS---IRCPQLEHLSLKRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAIRL 420
V+ +S + QLEHL + SN+ Q L+ L LDI+ H + A
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNG 439
Query: 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQL 480
LE L M+ S + L +I NL L+ S C L L+ LQ+
Sbjct: 440 IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 481 HSCEGITSASMAAISHSYM--LEVLELDNCNLLTSVSLEL 518
+ S+ + + L+VL+ +++TS EL
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 97/442 (21%), Positives = 167/442 (37%), Gaps = 77/442 (17%)
Query: 311 LRNLEALTLG--RGQLGDAFFHALADCSMLKSLNVNDATL----GNGVQEIPINHDQLRR 364
+N + L L G D A C LK L++ ++ + G+ + P + L
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188
Query: 365 L-------EITKCRVMRVSIRCPQLEHLSLKRS----NMAQAVLNCPLLHLLD----IAS 409
L E++ + R+ RCP L+ L L R+ +A + P L L A
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248
Query: 410 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES 469
+ + +A + C +L L S L + C+ L LN SY S +
Sbjct: 249 VRPDVYSGLSVALSGCKELRCL--SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306
Query: 470 VRL----PMLTVLQLHSCEGITSASMAAI--------------SHSYMLEVLELDNCNLL 511
V+L P L +L + I A + + S +++E L
Sbjct: 307 VKLLCQCPKLQ--RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364
Query: 512 TSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQ 571
SVS+ P+L+++ L CR+ + L + A +R N+T L + +
Sbjct: 365 VSVSMGCPKLESV-LYFCRQMTNAALITI-----------ARNRPNMTRFRLCIIEPKAP 412
Query: 572 ENLTSLALQC-------QCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLT 624
+ LT L C L+ LT+ V E E L+
Sbjct: 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA----------KKMEMLS 462
Query: 625 VVRFCSTSLVSLS--LVGCRAITALELK-CPILEKVCLDGCDHIESASFVPVALQSLNLG 681
V F S + + L GC ++ LE++ CP +K L +E+ + ++ S++ G
Sbjct: 463 VA-FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521
Query: 682 ICPKLSTLGIEALHMVVLELKG 703
C KL + L++ V++ +G
Sbjct: 522 AC-KLLGQKMPKLNVEVIDERG 542
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 53
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLN 268
L D+LL +FS L +L + + VC++W ++ E W+ L+
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 17/220 (7%)
Query: 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNV--NDATLGNGVQEIPINHDQLRRLEIT 368
L++L+ LT + G+AF + D L+ L++ N + + L+ L+++
Sbjct: 348 LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 369 KCRVMRVS---IRCPQLEHLSLKRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAIRL 420
V+ +S + QLEHL + SN+ Q L+ L LDI+ H + A
Sbjct: 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNG 463
Query: 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQL 480
LE L M+ S + L +I NL L+ S C L L+ LQ+
Sbjct: 464 IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 481 HSCEGITSASMAAISHSYM--LEVLELDNCNLLTSVSLEL 518
+ S+ + + L+VL+ +++TS EL
Sbjct: 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,468,863
Number of Sequences: 62578
Number of extensions: 669443
Number of successful extensions: 1380
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 70
length of query: 733
length of database: 14,973,337
effective HSP length: 106
effective length of query: 627
effective length of database: 8,340,069
effective search space: 5229223263
effective search space used: 5229223263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)