Query 004729
Match_columns 733
No_of_seqs 429 out of 3468
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 11:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 2.6E-27 5.7E-32 241.8 5.0 299 226-538 74-391 (483)
2 PLN00113 leucine-rich repeat r 99.9 1.5E-23 3.2E-28 257.1 24.1 400 311-727 139-583 (968)
3 KOG2120 SCF ubiquitin ligase, 99.9 1E-24 2.2E-29 213.5 8.3 269 224-509 98-374 (419)
4 PLN00113 leucine-rich repeat r 99.9 3.4E-23 7.3E-28 253.9 23.4 399 310-727 116-559 (968)
5 KOG4194 Membrane glycoprotein 99.8 5.8E-20 1.3E-24 194.5 5.0 339 314-682 80-448 (873)
6 KOG4341 F-box protein containi 99.8 1.6E-19 3.5E-24 185.1 5.4 271 390-720 154-457 (483)
7 PLN03210 Resistant to P. syrin 99.8 1.6E-17 3.5E-22 204.7 22.9 339 329-691 551-911 (1153)
8 KOG4194 Membrane glycoprotein 99.7 3.5E-19 7.7E-24 188.6 2.1 320 290-640 81-425 (873)
9 PLN03210 Resistant to P. syrin 99.7 4.7E-17 1E-21 200.6 20.1 126 581-711 777-910 (1153)
10 KOG0444 Cytoskeletal regulator 99.5 2.3E-16 5E-21 168.2 -3.2 237 262-508 7-255 (1255)
11 KOG0444 Cytoskeletal regulator 99.5 3.1E-16 6.8E-21 167.2 -4.7 340 306-691 26-380 (1255)
12 KOG0618 Serine/threonine phosp 99.5 1.8E-15 3.8E-20 169.1 -4.3 213 473-707 241-489 (1081)
13 cd00116 LRR_RI Leucine-rich re 99.3 1.5E-11 3.1E-16 131.4 14.1 208 269-509 5-232 (319)
14 KOG0618 Serine/threonine phosp 99.3 1E-13 2.3E-18 155.1 -5.8 122 550-685 358-488 (1081)
15 cd00116 LRR_RI Leucine-rich re 99.2 1.9E-10 4.1E-15 122.7 17.0 242 264-508 25-317 (319)
16 PRK15387 E3 ubiquitin-protein 99.2 1.8E-10 4E-15 133.1 14.2 253 426-726 201-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.2 1.1E-10 2.4E-15 134.9 11.8 89 313-409 223-311 (788)
18 KOG0472 Leucine-rich repeat pr 99.1 1.8E-13 3.9E-18 140.0 -12.5 227 281-521 62-297 (565)
19 KOG1947 Leucine rich repeat pr 99.1 8.5E-11 1.8E-15 132.9 4.4 38 222-259 43-80 (482)
20 KOG0472 Leucine-rich repeat pr 99.0 2.1E-12 4.5E-17 132.3 -8.3 212 285-509 89-308 (565)
21 KOG2120 SCF ubiquitin ligase, 99.0 1.9E-10 4.1E-15 113.9 2.8 170 360-529 185-373 (419)
22 KOG1947 Leucine rich repeat pr 98.9 2.3E-09 5E-14 121.2 8.9 185 388-626 257-443 (482)
23 KOG1909 Ran GTPase-activating 98.9 1.5E-09 3.2E-14 110.3 5.1 266 328-641 22-308 (382)
24 KOG1909 Ran GTPase-activating 98.9 8.7E-09 1.9E-13 104.8 10.5 228 278-509 21-309 (382)
25 PF12937 F-box-like: F-box-lik 98.9 4.7E-10 1E-14 82.8 0.4 46 224-269 1-46 (47)
26 KOG3207 Beta-tubulin folding c 98.8 3.7E-09 8.1E-14 110.2 5.6 212 396-619 117-335 (505)
27 PRK15370 E3 ubiquitin-protein 98.7 1.9E-08 4.2E-13 117.2 8.9 249 287-596 178-428 (754)
28 PRK15370 E3 ubiquitin-protein 98.7 5.1E-08 1.1E-12 113.7 9.0 239 426-706 178-427 (754)
29 KOG4658 Apoptotic ATPase [Sign 98.6 1.4E-07 3.1E-12 111.8 10.8 311 359-704 522-856 (889)
30 KOG3207 Beta-tubulin folding c 98.6 2.2E-08 4.8E-13 104.6 3.4 181 310-509 119-312 (505)
31 KOG4237 Extracellular matrix p 98.3 4.3E-08 9.3E-13 101.1 -2.4 121 288-409 68-197 (498)
32 smart00256 FBOX A Receptor for 98.3 6.4E-07 1.4E-11 63.8 4.3 40 227-266 1-40 (41)
33 KOG4658 Apoptotic ATPase [Sign 98.3 1.3E-06 2.8E-11 103.7 7.0 100 310-409 543-651 (889)
34 KOG4237 Extracellular matrix p 98.2 7E-08 1.5E-12 99.5 -4.8 98 312-409 67-173 (498)
35 PF00646 F-box: F-box domain; 98.1 5.4E-07 1.2E-11 66.7 0.2 43 223-265 2-44 (48)
36 PF14580 LRR_9: Leucine-rich r 98.0 2.1E-06 4.5E-11 82.1 2.4 79 310-392 17-100 (175)
37 PRK15386 type III secretion pr 98.0 1.5E-05 3.2E-10 85.5 8.9 160 547-729 48-214 (426)
38 PF14580 LRR_9: Leucine-rich r 98.0 3.8E-06 8.3E-11 80.3 3.8 100 288-392 20-125 (175)
39 PRK15386 type III secretion pr 98.0 1.5E-05 3.2E-10 85.4 8.2 133 580-725 50-187 (426)
40 KOG2982 Uncharacterized conser 98.0 3E-06 6.6E-11 84.6 2.7 186 310-514 69-265 (418)
41 KOG0617 Ras suppressor protein 97.9 4.7E-08 1E-12 89.6 -10.5 60 310-371 31-90 (264)
42 KOG1259 Nischarin, modulator o 97.9 6E-06 1.3E-10 82.5 2.3 120 547-684 280-410 (490)
43 KOG3665 ZYG-1-like serine/thre 97.8 3.4E-05 7.4E-10 89.5 7.5 153 310-463 120-286 (699)
44 KOG3665 ZYG-1-like serine/thre 97.8 3.8E-05 8.2E-10 89.2 6.8 83 395-482 143-229 (699)
45 KOG0617 Ras suppressor protein 97.7 1.2E-06 2.5E-11 80.7 -5.5 159 334-517 31-191 (264)
46 COG5238 RNA1 Ran GTPase-activa 97.7 0.00088 1.9E-08 66.6 13.7 88 285-373 28-133 (388)
47 KOG2982 Uncharacterized conser 97.6 7.8E-05 1.7E-09 74.8 5.5 182 278-463 62-260 (418)
48 COG5238 RNA1 Ran GTPase-activa 97.6 0.0007 1.5E-08 67.3 11.4 87 264-350 32-134 (388)
49 PF13855 LRR_8: Leucine rich r 97.5 4.9E-05 1.1E-09 59.3 2.3 60 312-371 1-60 (61)
50 KOG1259 Nischarin, modulator o 97.5 3.3E-05 7.1E-10 77.3 0.6 78 312-392 284-364 (490)
51 COG4886 Leucine-rich repeat (L 97.0 0.00077 1.7E-08 74.2 5.8 166 335-510 115-289 (394)
52 PF13855 LRR_8: Leucine rich r 97.0 0.0008 1.7E-08 52.4 3.7 55 336-390 1-59 (61)
53 PLN03150 hypothetical protein; 96.9 0.0013 2.9E-08 76.4 6.3 84 289-373 420-503 (623)
54 KOG1644 U2-associated snRNP A' 96.8 0.0017 3.8E-08 62.0 5.0 96 312-409 42-149 (233)
55 KOG3864 Uncharacterized conser 96.6 0.0018 4E-08 61.9 3.9 67 396-463 121-187 (221)
56 KOG3864 Uncharacterized conser 96.5 0.00077 1.7E-08 64.4 0.7 63 580-644 123-189 (221)
57 KOG2997 F-box protein FBX9 [Ge 96.5 0.0012 2.7E-08 66.7 2.0 44 224-267 107-155 (366)
58 PLN03150 hypothetical protein; 96.3 0.0066 1.4E-07 70.8 6.7 59 314-372 420-478 (623)
59 KOG0281 Beta-TrCP (transducin 96.3 0.0019 4.2E-08 65.7 1.9 51 218-268 69-123 (499)
60 KOG1859 Leucine-rich repeat pr 96.3 0.00042 9E-09 77.4 -3.1 81 472-564 186-267 (1096)
61 KOG0531 Protein phosphatase 1, 96.1 0.0012 2.7E-08 73.1 -0.6 170 308-508 91-265 (414)
62 PF12799 LRR_4: Leucine Rich r 96.0 0.0086 1.9E-07 43.1 3.7 37 312-349 1-37 (44)
63 COG4886 Leucine-rich repeat (L 96.0 0.0018 4E-08 71.2 -0.0 119 358-482 161-286 (394)
64 KOG1644 U2-associated snRNP A' 95.3 0.023 5E-07 54.5 4.6 100 335-437 41-151 (233)
65 KOG1859 Leucine-rich repeat pr 95.2 0.00098 2.1E-08 74.6 -5.4 40 308-349 183-222 (1096)
66 KOG2123 Uncharacterized conser 94.3 0.0039 8.4E-08 62.4 -3.3 18 547-564 59-76 (388)
67 PF12799 LRR_4: Leucine Rich r 94.2 0.068 1.5E-06 38.4 3.7 38 336-374 1-38 (44)
68 KOG0531 Protein phosphatase 1, 93.9 0.012 2.5E-07 65.3 -1.2 85 283-374 91-176 (414)
69 KOG2739 Leucine-rich acidic nu 93.8 0.035 7.7E-07 55.4 2.2 65 549-621 63-127 (260)
70 PLN03215 ascorbic acid mannose 93.6 0.065 1.4E-06 57.3 3.9 37 223-259 3-40 (373)
71 KOG2123 Uncharacterized conser 93.2 0.02 4.3E-07 57.5 -0.7 54 336-391 19-74 (388)
72 smart00367 LRR_CC Leucine-rich 93.2 0.073 1.6E-06 33.4 2.1 23 581-603 1-23 (26)
73 KOG0532 Leucine-rich repeat (L 92.9 0.014 3.1E-07 63.9 -2.2 126 306-437 115-245 (722)
74 KOG2739 Leucine-rich acidic nu 92.9 0.04 8.6E-07 55.1 1.0 35 356-390 39-75 (260)
75 smart00367 LRR_CC Leucine-rich 92.4 0.15 3.2E-06 32.0 2.7 23 425-447 1-23 (26)
76 KOG4579 Leucine-rich repeat (L 91.3 0.029 6.2E-07 50.6 -1.9 85 289-374 29-114 (177)
77 KOG0532 Leucine-rich repeat (L 91.2 0.013 2.9E-07 64.2 -4.9 169 309-508 95-270 (722)
78 KOG4579 Leucine-rich repeat (L 88.6 0.13 2.9E-06 46.4 0.0 102 267-371 32-134 (177)
79 PF13013 F-box-like_2: F-box-l 87.0 0.8 1.7E-05 40.0 3.8 29 224-252 22-50 (109)
80 PF13306 LRR_5: Leucine rich r 85.1 2.5 5.5E-05 37.8 6.5 59 547-618 8-66 (129)
81 PF13504 LRR_7: Leucine rich r 82.4 0.83 1.8E-05 25.4 1.2 16 715-731 1-16 (17)
82 KOG0274 Cdc4 and related F-box 78.0 0.88 1.9E-05 51.8 0.8 46 220-265 104-149 (537)
83 PF13306 LRR_5: Leucine rich r 78.0 2.9 6.4E-05 37.3 4.2 75 332-409 31-112 (129)
84 PF00560 LRR_1: Leucine Rich R 75.8 1.9 4.1E-05 25.7 1.5 15 633-648 2-16 (22)
85 PF13516 LRR_6: Leucine Rich r 75.5 1.7 3.8E-05 26.4 1.3 22 311-332 1-22 (24)
86 PF13516 LRR_6: Leucine Rich r 74.6 2.5 5.4E-05 25.7 1.8 22 425-447 1-22 (24)
87 KOG4308 LRR-containing protein 71.6 0.77 1.7E-05 51.5 -1.7 147 305-463 108-273 (478)
88 PF09372 PRANC: PRANC domain; 67.6 4.9 0.00011 34.3 2.8 26 222-247 70-95 (97)
89 KOG3763 mRNA export factor TAP 65.8 5.4 0.00012 44.4 3.3 72 548-626 215-286 (585)
90 smart00368 LRR_RI Leucine rich 52.3 24 0.00052 22.3 3.3 23 426-449 2-24 (28)
91 KOG3763 mRNA export factor TAP 49.5 11 0.00024 42.0 2.3 63 310-372 216-282 (585)
92 KOG4308 LRR-containing protein 43.4 5.8 0.00012 44.6 -1.1 172 277-463 105-301 (478)
93 KOG3926 F-box proteins [Amino 32.4 19 0.0004 36.4 0.7 47 221-267 199-246 (332)
94 smart00369 LRR_TYP Leucine-ric 27.8 48 0.001 20.2 1.8 14 312-325 2-15 (26)
95 smart00370 LRR Leucine-rich re 27.8 48 0.001 20.2 1.8 14 312-325 2-15 (26)
96 PF07723 LRR_2: Leucine Rich R 26.2 59 0.0013 20.3 1.9 25 402-426 2-26 (26)
97 PF08833 Axin_b-cat_bind: Axin 25.6 31 0.00068 24.7 0.7 14 73-86 3-16 (45)
98 PRK09718 hypothetical protein; 24.2 1.2E+02 0.0026 33.8 5.0 92 610-705 145-239 (512)
99 PLN02364 L-ascorbate peroxidas 20.6 36 0.00079 34.6 0.3 48 49-96 112-159 (250)
100 PHA03100 ankyrin repeat protei 20.2 80 0.0017 35.4 3.0 28 222-249 446-473 (480)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.93 E-value=2.6e-27 Score=241.80 Aligned_cols=299 Identities=27% Similarity=0.479 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEeeCC--CCCCHHHHHHHHhhCC-CccEEEEcCCCchhH
Q 004729 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFEN--RKISVEQFEDVCQRYP-NATEVNIYGAPAIHL 302 (733)
Q Consensus 226 ~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~--~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~ 302 (733)
.||+|++..||++|+.+.+++++.+|+.|.-.+.+..-|.++++.. ..+....+..+++|+. .++.|.++|+.....
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 7999999999999999999999999999999999999999999876 4455566777888876 589999999987777
Q ss_pred HHHHHhh-cCCCCCEEEecCc-cCChHHHHhcc-CCCCCcEEEEecCc-CCcc-cccccccCCCccEEEeeccccchhcc
Q 004729 303 LVMKAVS-LLRNLEALTLGRG-QLGDAFFHALA-DCSMLKSLNVNDAT-LGNG-VQEIPINHDQLRRLEITKCRVMRVSI 377 (733)
Q Consensus 303 ~~~~~l~-~l~~L~~L~Ls~~-~i~~~~~~~L~-~~~~L~~L~L~~~~-l~~~-~~~~~~~~~~L~~L~L~~~~~~~i~~ 377 (733)
.....+. .+|++++|.+.++ .+++.....++ .|++|++|++..|. +++. +..+...|++|++|+++.|+
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~------ 227 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP------ 227 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc------
Confidence 6665554 8999999999887 67777666665 58999999998865 3332 23355667777777766653
Q ss_pred cCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccc
Q 004729 378 RCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 457 (733)
Q Consensus 378 ~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L 457 (733)
+ ++++++..+..++..++.+.+.+|.......+..+...++.+.++++..|..++|..+..+...|..|+.|
T Consensus 228 ---q-----i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 228 ---Q-----ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred ---h-----hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 2 24478888899999999998889999999999888888999999999999999999999999899999999
Q ss_pred ccccCCCCCcCCC-----CCCCccEEEeCCCCCCchHHHHHhh-CCCCcCEEEEecCCCCccc-----ccCCCCCcEEEe
Q 004729 458 NSSYCPNISLESV-----RLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSV-----SLELPRLQNIRL 526 (733)
Q Consensus 458 ~L~~~~~l~~~~~-----~l~~L~~L~L~~c~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~-----~~~l~~L~~L~L 526 (733)
..++|..++.... ++++|+.|.+.+|..+++.++..++ +++.|+.+++..|..+++. ...+|.|+.+.+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 9999988765443 6899999999999999999999998 5789999999988765543 345788888888
Q ss_pred ccccCCcccccc
Q 004729 527 VHCRKFADLNLR 538 (733)
Q Consensus 527 ~~c~~l~~l~l~ 538 (733)
.+|..+++.++.
T Consensus 380 shce~itD~gi~ 391 (483)
T KOG4341|consen 380 SHCELITDEGIR 391 (483)
T ss_pred hhhhhhhhhhhh
Confidence 888887777543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.5e-23 Score=257.07 Aligned_cols=400 Identities=19% Similarity=0.145 Sum_probs=209.4
Q ss_pred CCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccch----hcccCCCCcEEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR----VSIRCPQLEHLS 386 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~----i~~~~~~L~~L~ 386 (733)
+++|++|+|++|.+....+..++.+++|++|++++|.+...++.....+++|++|++.+|.+.. ....+++|+.|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 4455555555555544444445555555555555555444444444445555555555554321 112344555555
Q ss_pred EcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 387 LKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 387 L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
+++|.+. ..+..+++|++|++++|. +.. .++..+..+++|+.|+++++. +....... ...+++|++|++++|
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTG-PIPSSLGNLKNLQYLFLYQNK-LSGPIPPS-IFSLQKLISLDLSDN 294 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCce-ecc-ccChhHhCCCCCCEEECcCCe-eeccCchh-HhhccCcCEEECcCC
Confidence 5554332 223445555555555532 211 122233445555555555543 22211111 124455555555544
Q ss_pred CC---CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEecccc------
Q 004729 463 PN---ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCR------ 530 (733)
Q Consensus 463 ~~---l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~------ 530 (733)
.. ++.....+++|+.|++.++ .+.......+..+++|+.|++++|.....+|. .+++|+.|++.++.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 31 1111224455555555552 23333333444555555555555543333332 13445555443321
Q ss_pred -------CCcccccccccccee---ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhh
Q 004729 531 -------KFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 600 (733)
Q Consensus 531 -------~l~~l~l~~~~L~~l---~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~ 600 (733)
.++.+.+..+.+... .+..|++|+.|++.+|.++...+ .....+++|+.|++++| .++....
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p-------~~~~~l~~L~~L~Ls~N-~l~~~~~ 445 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP-------SEFTKLPLVYFLDISNN-NLQGRIN 445 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC-------hhHhcCCCCCEEECcCC-cccCccC
Confidence 112222222222111 25667888888888888765322 12236778888888884 5655433
Q ss_pred hhhcCCCCCCCccEEEeecCCCCccccc--cCCCccEEeccccccccccc---cccccccEEecccccccccc--cc-cc
Q 004729 601 EVFSDGGGCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCDHIESA--SF-VP 672 (733)
Q Consensus 601 ~~~~~~~~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L~L~~c~~L~~~--~~-~~ 672 (733)
..+ ..+++|+.|++++|.....++. ...+|+.|++++|.--..++ ..+++|++|++++|.-.... .+ ..
T Consensus 446 ~~~---~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 446 SRK---WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred hhh---ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 333 4578899999988864444433 45788889988864332333 25788899999886433221 11 23
Q ss_pred cCCcEEEecCCCCccc-ccc---CcccccEEEecCCCCCCccCC---CCCCccEEeccCccc
Q 004729 673 VALQSLNLGICPKLST-LGI---EALHMVVLELKGCGVLSDAYI---NCPLLTSLDASFCRC 727 (733)
Q Consensus 673 ~~L~~L~L~~c~~L~~-l~~---~~~~L~~L~l~~c~~L~~~~~---~~p~L~~L~l~~C~~ 727 (733)
.+|++|+|++|. ++. +|. ...+|+.|++++|.....+.. ++++|+.|++++|+-
T Consensus 523 ~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 523 KKLVSLDLSHNQ-LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cCCCEEECCCCc-ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 478889998885 443 332 123688899998877544433 678899999988874
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-24 Score=213.46 Aligned_cols=269 Identities=19% Similarity=0.341 Sum_probs=197.5
Q ss_pred ccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHH
Q 004729 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLL 303 (733)
Q Consensus 224 ~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 303 (733)
|..|||||+..||+.|+.+++.+++.||||||+++.+..+|.++++..+.+.+..+..+.++ ++..+.+.........
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar~~~~~pr 175 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLARSFMDQPR 175 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcchhhhcCch
Confidence 78999999999999999999999999999999999999999999999999999999988875 4555554431111111
Q ss_pred HHHHhh-cCCCCCEEEecCccCChH-HHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCC
Q 004729 304 VMKAVS-LLRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQ 381 (733)
Q Consensus 304 ~~~~l~-~l~~L~~L~Ls~~~i~~~-~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~ 381 (733)
..+.+. .-..|++|||+...++.. ....++.|.+|+.|.|.++.+.+.+..-.....+|+.|+++.|+..
T Consensus 176 lae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~-------- 247 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF-------- 247 (419)
T ss_pred hhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc--------
Confidence 222233 234699999999988854 4556788999999999999998887777778888888888887532
Q ss_pred CcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhc-CCCCcEEeccCCCC-CChhHHHHHHHhccccccccc
Q 004729 382 LEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATS-CPQLESLDMSNCSC-VSDESLREIALSCANLRILNS 459 (733)
Q Consensus 382 L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~-~~~L~~L~L~~~~~-l~~~~l~~l~~~~~~L~~L~L 459 (733)
+.+.+.-++.+|..|..|+|++|....+. ...+..+ -++|..|+++++.. +.+..+..+...||+|.+|+|
T Consensus 248 ------t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 248 ------TENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred ------chhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 33455566777788888888887654444 3333333 35777788877653 444556666777777777777
Q ss_pred ccCCCCCcC----CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 460 SYCPNISLE----SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 460 ~~~~~l~~~----~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
++|..+... ..+++.|++|.++.|..+....+..+...|+|.+|++.+|-
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 777655542 23677777777777777776666666667777777777663
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3.4e-23 Score=253.88 Aligned_cols=399 Identities=18% Similarity=0.190 Sum_probs=197.6
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccch-h---cccCCCCcEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-V---SIRCPQLEHL 385 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~-i---~~~~~~L~~L 385 (733)
.+++|++|+|++|.+....+. ..+++|++|+|++|.+...++.....+++|++|++++|.+.. + ...+++|+.|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 445555555555544322221 234555555555555444444444455555555555554321 1 1234555555
Q ss_pred EEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccccccc
Q 004729 386 SLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (733)
Q Consensus 386 ~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (733)
++++|.+. ..+..+++|++|+++++. +.. .++..+..+++|++|+++++. ++.. ++..+..+++|+.|.+++
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSG-EIPYEIGGLTSLNHLDLVYNN-LTGP-IPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCc-cCC-cCChhHhcCCCCCEEECcCce-eccc-cChhHhCCCCCCEEECcC
Confidence 55554432 234455555555555532 221 122233445556666665554 2221 122223455566666655
Q ss_pred CCC---CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCccc
Q 004729 462 CPN---ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADL 535 (733)
Q Consensus 462 ~~~---l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l 535 (733)
+.. ++.....+++|++|++++| .+.......+..+++|+.|++++|......+. .+++|+.|.+.++.-...+
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 442 1222234556666666653 23333334455566666666666544333332 2456666665544211111
Q ss_pred cccccccceeecccCcCCceeeeccCccccccccccc-----------------cHHHHHhcCCCCcEEeecCCCCCChh
Q 004729 536 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQE-----------------NLTSLALQCQCLQEVDLTDCESLTNS 598 (733)
Q Consensus 536 ~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~-----------------~L~~l~~~~~~L~~L~Ls~C~~lt~~ 598 (733)
. -.+..+++|+.|++++|.+....+.... .+......+++|+.|++++| .++..
T Consensus 349 p--------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~ 419 (968)
T PLN00113 349 P--------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGE 419 (968)
T ss_pred C--------hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeE
Confidence 0 0134455566666666555432111000 01111234566777777664 44433
Q ss_pred hhhhhcCCCCCCCccEEEeecCCCCcccc---ccCCCccEEecccccccccccc--ccccccEEecccccccccc--cc-
Q 004729 599 VCEVFSDGGGCPMLKSLVLDNCEGLTVVR---FCSTSLVSLSLVGCRAITALEL--KCPILEKVCLDGCDHIESA--SF- 670 (733)
Q Consensus 599 ~~~~~~~~~~l~~L~~L~L~~c~~L~~~~---~~~~sL~~L~L~~c~~L~~l~~--~~p~L~~L~L~~c~~L~~~--~~- 670 (733)
.+..+ ..+++|+.|+++++.-...++ ..+++|+.|++++|.-...++. ..++|+.|++++|.-.... .+
T Consensus 420 ~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 420 LPSEF---TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred CChhH---hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhh
Confidence 33333 456677777776663222222 2566777777777654433332 3467888888775432221 11
Q ss_pred cccCCcEEEecCCCCccccccC---cccccEEEecCCCCCCcc---CCCCCCccEEeccCccc
Q 004729 671 VPVALQSLNLGICPKLSTLGIE---ALHMVVLELKGCGVLSDA---YINCPLLTSLDASFCRC 727 (733)
Q Consensus 671 ~~~~L~~L~L~~c~~L~~l~~~---~~~L~~L~l~~c~~L~~~---~~~~p~L~~L~l~~C~~ 727 (733)
...+|++|++++|.-...+|.. ..+|+.|+|++|.....+ ..++++|+.|++++|.-
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 2346788888887533334421 235888888887754333 33788999999988864
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=5.8e-20 Score=194.50 Aligned_cols=339 Identities=21% Similarity=0.260 Sum_probs=193.9
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcC
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKR 389 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~ 389 (733)
-+.|++++|.+.+.-+..+.++++|+.+++..|.+. .++.+.....+|+.|+|.+|.+..+. ...|.|+.|+|+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 345666666665555555556666666666665544 34444444555666666666554332 2355666666666
Q ss_pred CchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCC-
Q 004729 390 SNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN- 464 (733)
Q Consensus 390 ~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~- 464 (733)
|.+..+ +..-+++++|+|++ +.|++.... .+..+.+|..|.|+.+. ++... ...+.++++|+.|+|..+..
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~-~F~~lnsL~tlkLsrNr-ittLp-~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLAS-NRITTLETG-HFDSLNSLLTLKLSRNR-ITTLP-QRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecc-ccccccccc-cccccchheeeecccCc-ccccC-HHHhhhcchhhhhhcccccee
Confidence 655544 22224566666666 344443322 22334566666666655 33322 22333566666666665441
Q ss_pred -C-CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCcccccc
Q 004729 465 -I-SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLR 538 (733)
Q Consensus 465 -l-~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~ 538 (733)
+ .....+++.|+.|.+.. +.+....-.++-.+.++++|+|+.|. +..+.. .++.|+.| .++
T Consensus 235 ive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L-----------~lS 301 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQL-----------DLS 301 (873)
T ss_pred eehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhh-----------ccc
Confidence 1 12223566666666665 44443332334456667777777663 222221 23333333 334
Q ss_pred cccccee---ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEE
Q 004729 539 AMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 615 (733)
Q Consensus 539 ~~~L~~l---~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L 615 (733)
++.+..+ ..+.|++|+.|++++|+++.+.......|. .|++|.|++ +.++...--.| .++.+|++|
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-------~Le~LnLs~-Nsi~~l~e~af---~~lssL~~L 370 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-------QLEELNLSH-NSIDHLAEGAF---VGLSSLHKL 370 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-------Hhhhhcccc-cchHHHHhhHH---HHhhhhhhh
Confidence 4444444 256788999999999998888654444333 888999988 67765443334 457888888
Q ss_pred EeecCCC---Cccc--c-ccCCCccEEecccccccccccc----ccccccEEeccccc--ccccccccccCCcEEEecC
Q 004729 616 VLDNCEG---LTVV--R-FCSTSLVSLSLVGCRAITALEL----KCPILEKVCLDGCD--HIESASFVPVALQSLNLGI 682 (733)
Q Consensus 616 ~L~~c~~---L~~~--~-~~~~sL~~L~L~~c~~L~~l~~----~~p~L~~L~L~~c~--~L~~~~~~~~~L~~L~L~~ 682 (733)
+|+.+.- +++. + ..+++|++|.+.| ++|++++. ++++|++|+|.+.. .+.-..|.+..|+.|.+..
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence 8877521 2221 1 2688889999888 67887763 78999999998822 2333456666777776543
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.77 E-value=1.6e-19 Score=185.09 Aligned_cols=271 Identities=28% Similarity=0.498 Sum_probs=165.5
Q ss_pred CchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCC
Q 004729 390 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES 469 (733)
Q Consensus 390 ~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~ 469 (733)
..+..+...||++++|.+.+|.++++..+..+...|++|++|++..|..+++..+..+...|++|++|+++.|+.+....
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 34556677899999999999999999999999999999999999999989999999999999999999999988766533
Q ss_pred C-----CCCCccEEEeCCCCCCchHHHHHhh-CCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccc
Q 004729 470 V-----RLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS 543 (733)
Q Consensus 470 ~-----~l~~L~~L~L~~c~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~ 543 (733)
+ ++..++.+.+.+|....+..+..+. .+.-+.++++..|..+++ .+
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD---------------------~~------- 285 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD---------------------ED------- 285 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---------------------hH-------
Confidence 3 4556677766677766666555444 233344444444433332 22
Q ss_pred eeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCC
Q 004729 544 SIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGL 623 (733)
Q Consensus 544 ~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L 623 (733)
+..+..+|..|+.|+.++|..+++.+...+ .+++++|+.|.+.+|..+
T Consensus 286 ------------------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 286 ------------------------------LWLIACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSGCQQF 333 (483)
T ss_pred ------------------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccccchh
Confidence 222333344444444444444444443333 234444555554444444
Q ss_pred ccccc-----cCCCccEEecccccc-----ccccccccccccEEeccccccccccccc--------ccCCcEEEecCCCC
Q 004729 624 TVVRF-----CSTSLVSLSLVGCRA-----ITALELKCPILEKVCLDGCDHIESASFV--------PVALQSLNLGICPK 685 (733)
Q Consensus 624 ~~~~~-----~~~sL~~L~L~~c~~-----L~~l~~~~p~L~~L~L~~c~~L~~~~~~--------~~~L~~L~L~~c~~ 685 (733)
++..+ .+..|+.+++.+|.. |.++..+||.|+.|.+++|..+++.|+. ...+..+.+.+||.
T Consensus 334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 334 SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 43322 344455555554433 3445568888888888888888876542 22445555555555
Q ss_pred ccccccCc----ccccEEEecCCCCCCccCC-----CCCCccEE
Q 004729 686 LSTLGIEA----LHMVVLELKGCGVLSDAYI-----NCPLLTSL 720 (733)
Q Consensus 686 L~~l~~~~----~~L~~L~l~~c~~L~~~~~-----~~p~L~~L 720 (733)
+++-..+. ..|+.+++.+|..++...+ ++|+++..
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred chHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 44433221 2355556666665554444 45555443
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1.6e-17 Score=204.70 Aligned_cols=339 Identities=21% Similarity=0.267 Sum_probs=200.0
Q ss_pred HHhccCCCCCcEEEEecCcCCc------cccccccc-CCCccEEEeeccccchhccc--CCCCcEEEEcCCchHHH---h
Q 004729 329 FHALADCSMLKSLNVNDATLGN------GVQEIPIN-HDQLRRLEITKCRVMRVSIR--CPQLEHLSLKRSNMAQA---V 396 (733)
Q Consensus 329 ~~~L~~~~~L~~L~L~~~~l~~------~~~~~~~~-~~~L~~L~L~~~~~~~i~~~--~~~L~~L~L~~~~l~~~---~ 396 (733)
...+..+++|+.|.+..+.... .++.-+.. .++|+.|.+.++++..++.. +.+|+.|++.++.+..+ .
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccc
Confidence 3456778999999987653211 12221222 35689999988887766643 56899999988877654 3
Q ss_pred hCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcC--CCCCCC
Q 004729 397 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLE--SVRLPM 474 (733)
Q Consensus 397 ~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~--~~~l~~ 474 (733)
..+++|+.|++++|..+...+ . +..+++|+.|++.+|..+.. ++.....+++|+.|++++|..+... ...+++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip--~-ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP--D-LSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC--c-cccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 467889999998876554432 2 45678899999998875432 3334457788888888888754322 226778
Q ss_pred ccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC--CCCCcEEEeccccCCccccccccccceeecccCcC
Q 004729 475 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE--LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 552 (733)
Q Consensus 475 L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~--l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~ 552 (733)
|+.|++++|..+.... ....+|++|+++++. +..+|.. +++|+.|.+..+....-.. ....+..+....+++
T Consensus 706 L~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFP----DISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWE-RVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCEEeCCCCCCccccc----cccCCcCeeecCCCc-cccccccccccccccccccccchhhccc-cccccchhhhhcccc
Confidence 8888888876543221 124578888888764 5555543 4566666665433211000 000011111223456
Q ss_pred CceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCC
Q 004729 553 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTS 632 (733)
Q Consensus 553 L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~s 632 (733)
|+.|++.+|....- +..-...+++|+.|++++|+.++. ++....+++|+.|+|++|..+..++....+
T Consensus 780 L~~L~Ls~n~~l~~-------lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 780 LTRLFLSDIPSLVE-------LPSSIQNLHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred chheeCCCCCCccc-------cChhhhCCCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCccccccccccc
Confidence 66666666532111 111123566677777776665542 222224666777777776666666555566
Q ss_pred ccEEecccccccccccc---ccccccEEeccccccccccccc---ccCCcEEEecCCCCcccccc
Q 004729 633 LVSLSLVGCRAITALEL---KCPILEKVCLDGCDHIESASFV---PVALQSLNLGICPKLSTLGI 691 (733)
Q Consensus 633 L~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~L~~~~~~---~~~L~~L~L~~c~~L~~l~~ 691 (733)
|+.|++++ ..++.++. .+++|+.|+|.+|+.|+.+... ...|+.+++++|++|+.++.
T Consensus 848 L~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 848 ISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 66666666 34555542 4566666666666666654332 22455666666666665544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.5e-19 Score=188.60 Aligned_cols=320 Identities=16% Similarity=0.211 Sum_probs=168.6
Q ss_pred cEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeec
Q 004729 290 TEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK 369 (733)
Q Consensus 290 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~ 369 (733)
+.|++++ +.+..+....|..+++|+++.+.+|.++ ..|.......+|+.|+|.+|.+...-.+-...++.|+.|+|+.
T Consensus 81 ~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccc-cccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4455555 4444555555566666666666666555 3343333455566666666665554444455566666666666
Q ss_pred cccchhccc----CCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCCh
Q 004729 370 CRVMRVSIR----CPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD 441 (733)
Q Consensus 370 ~~~~~i~~~----~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~ 441 (733)
|.+..++.. -+++++|+|++|.+..+ +.++.+|..|.|+. +.++... ...++++++|+.|+|..+. +..
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp-~r~Fk~L~~L~~LdLnrN~-iri 235 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLP-QRSFKRLPKLESLDLNRNR-IRI 235 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccC-HHHhhhcchhhhhhccccc-eee
Confidence 665544422 24567777776666543 45556677777776 4455443 2345567777777776655 221
Q ss_pred hHHHHHHHhcccccccccccCC--CCCcCC-CCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC-
Q 004729 442 ESLREIALSCANLRILNSSYCP--NISLES-VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE- 517 (733)
Q Consensus 442 ~~l~~l~~~~~~L~~L~L~~~~--~l~~~~-~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~- 517 (733)
... ..++.+++|+.|.+..+. .+.+.. ..+.++++|+|.. +.+....-..+-.++.|+.|++++|. +..+...
T Consensus 236 ve~-ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~ 312 (873)
T KOG4194|consen 236 VEG-LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDS 312 (873)
T ss_pred ehh-hhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhh-hheeecch
Confidence 111 112356666666666554 222222 2566777777766 55555544455566777777777663 2222211
Q ss_pred ---CCCCcEEEeccccCCcccccccccccee---ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecC
Q 004729 518 ---LPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591 (733)
Q Consensus 518 ---l~~L~~L~L~~c~~l~~l~l~~~~L~~l---~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~ 591 (733)
.++|+.|++ +++.+..+ .+..+..|+.|.++.|+++.+.-.... .+.+|++|+|++
T Consensus 313 WsftqkL~~LdL-----------s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-------~lssL~~LdLr~ 374 (873)
T KOG4194|consen 313 WSFTQKLKELDL-----------SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-------GLSSLHKLDLRS 374 (873)
T ss_pred hhhcccceeEec-----------cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH-------HhhhhhhhcCcC
Confidence 234444433 33332222 234445566666666666554322222 233666666655
Q ss_pred CCCCChhh---hhhhcCCCCCCCccEEEeecCCCCccccc----cCCCccEEeccc
Q 004729 592 CESLTNSV---CEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVG 640 (733)
Q Consensus 592 C~~lt~~~---~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~ 640 (733)
+.+.-.+ ...| .++++|+.|.+.++ +++.++. .+.+|++|+|.+
T Consensus 375 -N~ls~~IEDaa~~f---~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 375 -NELSWCIEDAAVAF---NGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred -CeEEEEEecchhhh---ccchhhhheeecCc-eeeecchhhhccCcccceecCCC
Confidence 3332111 1122 34666666666664 4555543 456666666655
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=4.7e-17 Score=200.63 Aligned_cols=126 Identities=23% Similarity=0.348 Sum_probs=75.9
Q ss_pred CCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc--cCCCccEEeccccccccccccccccccEEe
Q 004729 581 CQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITALELKCPILEKVC 658 (733)
Q Consensus 581 ~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~ 658 (733)
+++|+.|++++|+.+.... .. .+.+++|+.|+|++|..++.++. .+++|+.|++++|..+..++...++|++|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP-~s---i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELP-SS---IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccC-hh---hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeE
Confidence 4567777777765444321 12 24567777777777766666654 456677777777776666665556677777
Q ss_pred cccccccccccc---cccCCcEEEecCCCCccccccCcc---cccEEEecCCCCCCccC
Q 004729 659 LDGCDHIESASF---VPVALQSLNLGICPKLSTLGIEAL---HMVVLELKGCGVLSDAY 711 (733)
Q Consensus 659 L~~c~~L~~~~~---~~~~L~~L~L~~c~~L~~l~~~~~---~L~~L~l~~c~~L~~~~ 711 (733)
|++ ..++.+.. ...+|+.|++++|++|+.++.... .|+.|.+++|+.|+.+.
T Consensus 853 Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 853 LSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 766 34443221 123667777777777777665332 35566777777665443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=2.3e-16 Score=168.18 Aligned_cols=237 Identities=22% Similarity=0.277 Sum_probs=164.0
Q ss_pred CCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEE
Q 004729 262 DFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSL 341 (733)
Q Consensus 262 ~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L 341 (733)
.+.+-++|+...++...|..-.+...+++.|.+.. ..+. .++..++.+.+|++|.+.+|++. .....++.+|.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 35667788777777666666666677888888876 2232 35677899999999999999887 567778899999999
Q ss_pred EEecCcCC-cccccccccCCCccEEEeeccccchhcc---cCCCCcEEEEcCCchHH----HhhCCCCccEEEEecCCCC
Q 004729 342 NVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKL 413 (733)
Q Consensus 342 ~L~~~~l~-~~~~~~~~~~~~L~~L~L~~~~~~~i~~---~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c~~l 413 (733)
.+..|.+. .+++.-+..+..|+.|+|++|.+...+. ...++..|+|++|++.. ++.++.-|-.|+|+. +.+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chh
Confidence 99988864 4566666788999999999998877664 45678889999988764 355667777788877 344
Q ss_pred ChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC----CCCcCCCCCCCccEEEeCCCCCCchH
Q 004729 414 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP----NISLESVRLPMLTVLQLHSCEGITSA 489 (733)
Q Consensus 414 ~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~----~l~~~~~~l~~L~~L~L~~c~~l~~~ 489 (733)
.. ++.-...+..|+.|++++++ +....+..+. .++.|+.|++++.. +++...-.+.+|+.++++. +.+. .
T Consensus 163 e~--LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp-~ 236 (1255)
T KOG0444|consen 163 EM--LPPQIRRLSMLQTLKLSNNP-LNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLP-I 236 (1255)
T ss_pred hh--cCHHHHHHhhhhhhhcCCCh-hhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCC-c
Confidence 32 33344566778888888877 4444444332 45566666666654 3333444566677777765 3333 2
Q ss_pred HHHHhhCCCCcCEEEEecC
Q 004729 490 SMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 490 ~~~~l~~~~~L~~L~L~~~ 508 (733)
.++.+-++++|+.|+|++|
T Consensus 237 vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred chHHHhhhhhhheeccCcC
Confidence 3345556667777777766
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=3.1e-16 Score=167.21 Aligned_cols=340 Identities=19% Similarity=0.231 Sum_probs=178.2
Q ss_pred HHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEE
Q 004729 306 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHL 385 (733)
Q Consensus 306 ~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L 385 (733)
..+..+..++.|.|....+. ..|..++.|.+|++|.+.+|.+.....+ ...++.|+.+.+..|.+..
T Consensus 26 ~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKn----------- 92 (1255)
T KOG0444|consen 26 HDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKN----------- 92 (1255)
T ss_pred hhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcccccc-----------
Confidence 33444455555555555444 3455555555555555555554432222 2244555555555444321
Q ss_pred EEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC--
Q 004729 386 SLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 463 (733)
Q Consensus 386 ~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~-- 463 (733)
.++..-+-.+..|..|+|+. +++.. .+.-+....++-.|+++++. | +.....++.+++.|-.|+|+++.
T Consensus 93 ----sGiP~diF~l~dLt~lDLSh-NqL~E--vP~~LE~AKn~iVLNLS~N~-I-etIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 93 ----SGIPTDIFRLKDLTILDLSH-NQLRE--VPTNLEYAKNSIVLNLSYNN-I-ETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ----CCCCchhcccccceeeecch-hhhhh--cchhhhhhcCcEEEEcccCc-c-ccCCchHHHhhHhHhhhccccchhh
Confidence 12222222344444444444 22222 12223333455555555544 1 11122233344455555555443
Q ss_pred CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCC-CcccccCCCCCcEEEeccccCCcccccccccc
Q 004729 464 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL-LTSVSLELPRLQNIRLVHCRKFADLNLRAMML 542 (733)
Q Consensus 464 ~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~-l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L 542 (733)
.++...-++.+|++|+|++ +.+....+..+..+++|+.|++++... +..+|..+ ....++.++.++.+.+
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--------d~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--------DDLHNLRDVDLSENNL 234 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--------hhhhhhhhccccccCC
Confidence 2222333455666666665 334444444555566666666665322 22333221 1222344455555544
Q ss_pred cee--ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecC
Q 004729 543 SSI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 543 ~~l--~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
..+ .+.+.++|+.|++++|.|+++..... .-.+|+.|+++. ++++...- .+..+++|+.|.+.++
T Consensus 235 p~vPecly~l~~LrrLNLS~N~iteL~~~~~--------~W~~lEtLNlSr-NQLt~LP~----avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKITELNMTEG--------EWENLETLNLSR-NQLTVLPD----AVCKLTKLTKLYANNN 301 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCceeeeeccHH--------HHhhhhhhcccc-chhccchH----HHhhhHHHHHHHhccC
Confidence 444 46677888888888888887754321 124788888888 67764321 2245778888877554
Q ss_pred CCCccccc-----cCCCccEEecccccccccccc---ccccccEEeccccccccc-ccc-cccCCcEEEecCCCCccccc
Q 004729 621 EGLTVVRF-----CSTSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDHIES-ASF-VPVALQSLNLGICPKLSTLG 690 (733)
Q Consensus 621 ~~L~~~~~-----~~~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~L~~-~~~-~~~~L~~L~L~~c~~L~~l~ 690 (733)
+++.-++ .+..|+.+...+ ++|+-++. .|+.|+.|.|++..-++- .++ ..+.|+.|++...|+|..-|
T Consensus 302 -kL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 302 -KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -cccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 3443322 455666666665 55665553 688999999988554443 222 34589999999999887655
Q ss_pred c
Q 004729 691 I 691 (733)
Q Consensus 691 ~ 691 (733)
.
T Consensus 380 K 380 (1255)
T KOG0444|consen 380 K 380 (1255)
T ss_pred C
Confidence 3
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=1.8e-15 Score=169.11 Aligned_cols=213 Identities=23% Similarity=0.260 Sum_probs=132.0
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC---CCCCcEEEeccccCCcccccccccccee--ec
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCRKFADLNLRAMMLSSI--MV 547 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~---l~~L~~L~L~~c~~l~~l~l~~~~L~~l--~l 547 (733)
.+|++++++. +++.... ..++.+.+|+.|.+.+|. ++.+|.. ..+|+.|.+.+ +.++++ .+
T Consensus 241 ~nl~~~dis~-n~l~~lp-~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~-----------nel~yip~~l 306 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLP-EWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY-----------NELEYIPPFL 306 (1081)
T ss_pred ccceeeecch-hhhhcch-HHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh-----------hhhhhCCCcc
Confidence 4677777776 4444444 667777777777777664 3554443 23333333322 222222 24
Q ss_pred ccCcCCceeeeccCcccccccccccc----HHHHH--------------hcCCCCcEEeecCCCCCChhhhhhhcCCCCC
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQEN----LTSLA--------------LQCQCLQEVDLTDCESLTNSVCEVFSDGGGC 609 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~----L~~l~--------------~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l 609 (733)
.....|+.|++..|.|..+....... +..+- ...+.|+.|.+.+ +.++|.....+ .++
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l---~~~ 382 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVL---VNF 382 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhh---ccc
Confidence 44566777777777766553211100 11110 1246788888888 78998765444 688
Q ss_pred CCccEEEeecCCCCccccc----cCCCccEEecccccccccccc---ccccccEEeccccccccccc--ccccCCcEEEe
Q 004729 610 PMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDHIESAS--FVPVALQSLNL 680 (733)
Q Consensus 610 ~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~L~~~~--~~~~~L~~L~L 680 (733)
++||.|+|+++ .|+.++. .+..|++|+++| ++|+.++. .|+.|++|...+ +.|..+. ...++|+.+|+
T Consensus 383 ~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEec
Confidence 99999999997 5777764 678899999999 77888774 677888877665 3343322 12347888888
Q ss_pred cCCCCccccccC----cccccEEEecCCCCC
Q 004729 681 GICPKLSTLGIE----ALHMVVLELKGCGVL 707 (733)
Q Consensus 681 ~~c~~L~~l~~~----~~~L~~L~l~~c~~L 707 (733)
+ |.+|+.+.+. .++|++|+++|+..+
T Consensus 460 S-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 460 S-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred c-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 6 4467765432 246888888888763
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=1.5e-11 Score=131.36 Aligned_cols=208 Identities=20% Similarity=0.265 Sum_probs=94.4
Q ss_pred eCCCCCCHHHHHHHHhhCCCccEEEEcCCCchh---HHHHHHhhcCCCCCEEEecCccCC------hHHHHhccCCCCCc
Q 004729 269 FENRKISVEQFEDVCQRYPNATEVNIYGAPAIH---LLVMKAVSLLRNLEALTLGRGQLG------DAFFHALADCSMLK 339 (733)
Q Consensus 269 l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~l~~l~~L~~L~Ls~~~i~------~~~~~~L~~~~~L~ 339 (733)
|....+....+..++....+++.+++.++.-.. ..+...+...+++++|+++++.+. ......+..+++|+
T Consensus 5 L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 84 (319)
T cd00116 5 LKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84 (319)
T ss_pred cccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCcee
Confidence 333333333444444555556667766643211 112233445566666666665554 12233444566666
Q ss_pred EEEEecCcCCcccccccccC---CCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCC-CCccEEEEecCCCCCh
Q 004729 340 SLNVNDATLGNGVQEIPINH---DQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC-PLLHLLDIASCHKLSD 415 (733)
Q Consensus 340 ~L~L~~~~l~~~~~~~~~~~---~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~-~~L~~L~L~~c~~l~~ 415 (733)
.|+++++.+..........+ ++|++|++++|.+.... ...+...+..+ ++|+.|++++|. ++.
T Consensus 85 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~------------~~~l~~~l~~~~~~L~~L~L~~n~-l~~ 151 (319)
T cd00116 85 ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG------------LRLLAKGLKDLPPALEKLVLGRNR-LEG 151 (319)
T ss_pred EEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH------------HHHHHHHHHhCCCCceEEEcCCCc-CCc
Confidence 66666665543222211111 22444444444321000 00011123334 666666666653 442
Q ss_pred H---HHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHH
Q 004729 416 A---AIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 492 (733)
Q Consensus 416 ~---~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~ 492 (733)
. .+...+..+++|+.|+++++. +++..+..+...++ .+++|++|++++| .+++....
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~------------------~~~~L~~L~L~~n-~i~~~~~~ 211 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLK------------------ANCNLEVLDLNNN-GLTDEGAS 211 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHH------------------hCCCCCEEeccCC-ccChHHHH
Confidence 2 223334455667777776665 55544444433222 1234555555543 23333222
Q ss_pred ----HhhCCCCcCEEEEecCC
Q 004729 493 ----AISHSYMLEVLELDNCN 509 (733)
Q Consensus 493 ----~l~~~~~L~~L~L~~~~ 509 (733)
.+..+++|++|++++|.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhcccCCCCEEecCCCc
Confidence 23345666666666653
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.27 E-value=1e-13 Score=155.14 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=70.4
Q ss_pred CcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-
Q 004729 550 CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF- 628 (733)
Q Consensus 550 c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~- 628 (733)
.+.|+.|.+.+|.|+.- ...+..++++|+.|+|++ +.+....-..+ ..++.|++|+|+|+ +++.++.
T Consensus 358 ~~~Lq~LylanN~Ltd~-------c~p~l~~~~hLKVLhLsy-NrL~~fpas~~---~kle~LeeL~LSGN-kL~~Lp~t 425 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDS-------CFPVLVNFKHLKVLHLSY-NRLNSFPASKL---RKLEELEELNLSGN-KLTTLPDT 425 (1081)
T ss_pred hHHHHHHHHhcCccccc-------chhhhccccceeeeeecc-cccccCCHHHH---hchHHhHHHhcccc-hhhhhhHH
Confidence 34566667777776532 122334667777777777 55553322222 45667777777775 4666554
Q ss_pred --cCCCccEEecccccccccccc--ccccccEEecccccccccccc---cc-cCCcEEEecCCCC
Q 004729 629 --CSTSLVSLSLVGCRAITALEL--KCPILEKVCLDGCDHIESASF---VP-VALQSLNLGICPK 685 (733)
Q Consensus 629 --~~~sL~~L~L~~c~~L~~l~~--~~p~L~~L~L~~c~~L~~~~~---~~-~~L~~L~L~~c~~ 685 (733)
.+..|+.|...+ +.|..++. .+|.|+.++|+. ++|+.... .| ++|++|++++.++
T Consensus 426 va~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhhhhHHHhhcC-CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 455566555544 34444442 566777777765 55555322 34 5777777776654
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=1.9e-10 Score=122.71 Aligned_cols=242 Identities=18% Similarity=0.185 Sum_probs=139.1
Q ss_pred eeEEeeCCCCCCHHH---HHHHHhhCCCccEEEEcCCCch-----hHHHHHHhhcCCCCCEEEecCccCChHHHHhccCC
Q 004729 264 WRCLNFENRKISVEQ---FEDVCQRYPNATEVNIYGAPAI-----HLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADC 335 (733)
Q Consensus 264 w~~l~l~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~ 335 (733)
.+.+++....+.... +...+...++++.+++.+.... .......+..+++|+.|+++++.+.......+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 456667666665443 3445556677888888764322 12234456678899999999888865444444433
Q ss_pred ---CCCcEEEEecCcCCcc----cccccccC-CCccEEEeeccccc-----h---hcccCCCCcEEEEcCCchH-----H
Q 004729 336 ---SMLKSLNVNDATLGNG----VQEIPINH-DQLRRLEITKCRVM-----R---VSIRCPQLEHLSLKRSNMA-----Q 394 (733)
Q Consensus 336 ---~~L~~L~L~~~~l~~~----~~~~~~~~-~~L~~L~L~~~~~~-----~---i~~~~~~L~~L~L~~~~l~-----~ 394 (733)
++|++|++++|.+.+. +......+ ++|++|++.+|.+. . ....+++|++|+++++.+. .
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 4599999998877632 12223345 78888888888754 1 1234556777777766544 1
Q ss_pred ---HhhCCCCccEEEEecCCCCChHHH---HHHHhcCCCCcEEeccCCCCCChhHHHHHHHhc----ccccccccccCCC
Q 004729 395 ---AVLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDESLREIALSC----ANLRILNSSYCPN 464 (733)
Q Consensus 395 ---~~~~~~~L~~L~L~~c~~l~~~~l---~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~----~~L~~L~L~~~~~ 464 (733)
.+..+++|++|++++| .+.+... ...+..+++|+.|++++|. +++..+..+...+ ++|++|++.+|..
T Consensus 185 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 1334457777777775 3544432 3344456777777777765 6666666655443 4666666665542
Q ss_pred CC-------cCCCCCCCccEEEeCCCCCCchHHHHHhh----CC-CCcCEEEEecC
Q 004729 465 IS-------LESVRLPMLTVLQLHSCEGITSASMAAIS----HS-YMLEVLELDNC 508 (733)
Q Consensus 465 l~-------~~~~~l~~L~~L~L~~c~~l~~~~~~~l~----~~-~~L~~L~L~~~ 508 (733)
.. .....+++|+++++++ +.+++.+...+. .. +.|++|++.++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 10 0111335566666665 345444332222 12 45555555443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=1.8e-10 Score=133.14 Aligned_cols=253 Identities=16% Similarity=0.116 Sum_probs=162.6
Q ss_pred CCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEE
Q 004729 426 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505 (733)
Q Consensus 426 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L 505 (733)
..-..|+++.+. ++. ++... .++|+.|.+.++... ......++|++|++++ +.++... ...++|++|++
T Consensus 201 ~~~~~LdLs~~~-Lts--LP~~l--~~~L~~L~L~~N~Lt-~LP~lp~~Lk~LdLs~-N~LtsLP----~lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESG-LTT--LPDCL--PAHITTLVIPDNNLT-SLPALPPELRTLEVSG-NQLTSLP----VLPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCC-CCc--CCcch--hcCCCEEEccCCcCC-CCCCCCCCCcEEEecC-CccCccc----Ccccccceeec
Confidence 456778888875 442 22211 147888888876522 2223467899999988 4565432 12467888888
Q ss_pred ecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCc
Q 004729 506 DNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585 (733)
Q Consensus 506 ~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~ 585 (733)
.+|. +..++..+++|+.|.+.++ .++.+. ...++|+.|++++|.|+.+.. ...+|+
T Consensus 270 s~N~-L~~Lp~lp~~L~~L~Ls~N-~Lt~LP-----------~~p~~L~~LdLS~N~L~~Lp~-----------lp~~L~ 325 (788)
T PRK15387 270 FSNP-LTHLPALPSGLCKLWIFGN-QLTSLP-----------VLPPGLQELSVSDNQLASLPA-----------LPSELC 325 (788)
T ss_pred cCCc-hhhhhhchhhcCEEECcCC-cccccc-----------ccccccceeECCCCccccCCC-----------Cccccc
Confidence 8874 6666665567777776554 233221 123678889998888876531 123677
Q ss_pred EEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCccEEeccccccccccccccccccEEeccccccc
Q 004729 586 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHI 665 (733)
Q Consensus 586 ~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~c~~L 665 (733)
.|++++| .++. ++ ...++|+.|+|+++ .++.++....+|+.|++++ +.|..++...++|+.|+|++ +.+
T Consensus 326 ~L~Ls~N-~L~~-----LP--~lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~-N~L~~LP~l~~~L~~LdLs~-N~L 394 (788)
T PRK15387 326 KLWAYNN-QLTS-----LP--TLPSGLQELSVSDN-QLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVSG-NRL 394 (788)
T ss_pred ccccccC-cccc-----cc--ccccccceEecCCC-ccCCCCCCCcccceehhhc-cccccCcccccccceEEecC-Ccc
Confidence 7888773 5542 22 11347888888775 5777766677888888776 45666665556788888887 456
Q ss_pred ccccccccCCcEEEecCCCCccccccCcccccEEEecCCCCCCccC---CCCCCccEEeccCcc
Q 004729 666 ESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY---INCPLLTSLDASFCR 726 (733)
Q Consensus 666 ~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~L~~L~l~~c~~L~~~~---~~~p~L~~L~l~~C~ 726 (733)
+.+...+.+|+.|+++++. |+.+|.....|+.|+++++. |+.+. .++++|+.|++++++
T Consensus 395 t~LP~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 395 TSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCCcccCCCEEEccCCc-CCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 6555556678888888874 77777544467777777744 33332 367788888887764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.17 E-value=1.1e-10 Score=134.85 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=48.1
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCch
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l 392 (733)
+|+.|.+++|.++. ++. ..++|++|++++|.+.. ++ ...++|+.|++.+|.+..++...++|+.|++.+|.+
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP---~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LP---VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 294 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-cc---CcccccceeeccCCchhhhhhchhhcCEEECcCCcc
Confidence 56677776666652 221 24566666666665542 12 123556666666665555554445555566555555
Q ss_pred HHHhhCCCCccEEEEec
Q 004729 393 AQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 393 ~~~~~~~~~L~~L~L~~ 409 (733)
..+....++|+.|++++
T Consensus 295 t~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 295 TSLPVLPPGLQELSVSD 311 (788)
T ss_pred ccccccccccceeECCC
Confidence 54433445555555555
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.12 E-value=1.8e-13 Score=140.00 Aligned_cols=227 Identities=19% Similarity=0.210 Sum_probs=139.3
Q ss_pred HHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCC
Q 004729 281 DVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHD 360 (733)
Q Consensus 281 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 360 (733)
.-..+...++.+.+.... . ...+++++.+..++.++.+++.+. .++..+...++|+.|+++.+.+....+ -+..+-
T Consensus 62 ~dl~nL~~l~vl~~~~n~-l-~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~-~i~~~~ 137 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNK-L-SQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD-SIGRLL 137 (565)
T ss_pred HhhhcccceeEEEeccch-h-hhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc-hHHHHh
Confidence 334455667777776622 2 224566777777888888888777 567777888888888888887653333 334566
Q ss_pred CccEEEeeccccchhcc---cCCCCcEEEEcCCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEecc
Q 004729 361 QLRRLEITKCRVMRVSI---RCPQLEHLSLKRSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 434 (733)
Q Consensus 361 ~L~~L~L~~~~~~~i~~---~~~~L~~L~L~~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~ 434 (733)
.|+.|+..+|.+...+. .+.+|..+.+.++.+.+. .-+++.|++|+... +.+ ..++.-++.+.+|+.|++.
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L--~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLL--ETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhh--hcCChhhcchhhhHHHHhh
Confidence 77778877777766654 345566677777766543 22366677776544 112 2233344556667777777
Q ss_pred CCCCCChhHHHHHHHhcccccccccccCC--CCCcCCC-CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCC
Q 004729 435 NCSCVSDESLREIALSCANLRILNSSYCP--NISLESV-RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 511 (733)
Q Consensus 435 ~~~~l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~-~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l 511 (733)
.+. +. .++++ ..|..|++|+++.+. .++.+.. .+++|..|++.. +.++... ..+..+.+|+.||++++ .+
T Consensus 215 ~Nk-i~--~lPef-~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~P-de~clLrsL~rLDlSNN-~i 287 (565)
T KOG0472|consen 215 RNK-IR--FLPEF-PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVP-DEICLLRSLERLDLSNN-DI 287 (565)
T ss_pred hcc-cc--cCCCC-CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCc-hHHHHhhhhhhhcccCC-cc
Confidence 665 21 23322 367777777777654 2333333 577778888877 4454433 33455677888888876 46
Q ss_pred cccccCCCCC
Q 004729 512 TSVSLELPRL 521 (733)
Q Consensus 512 ~~~~~~l~~L 521 (733)
+.+|..+.+|
T Consensus 288 s~Lp~sLgnl 297 (565)
T KOG0472|consen 288 SSLPYSLGNL 297 (565)
T ss_pred ccCCcccccc
Confidence 6666655444
No 19
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.06 E-value=8.5e-11 Score=132.90 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=25.3
Q ss_pred ccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhc
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASA 259 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~ 259 (733)
......|++....++......+......++++|.....
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLG 80 (482)
T ss_pred eeeeccccchhhhcccccccccccccchhhhhhhhhhh
Confidence 44455666777777777776666667777777766543
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.05 E-value=2.1e-12 Score=132.31 Aligned_cols=212 Identities=16% Similarity=0.182 Sum_probs=144.9
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
+...++.++.+. +. -...++.+...++|..++++++.+. ..+..++.+..|..++..+|.+.... +-..++.+|..
T Consensus 89 ~l~~l~~l~vs~-n~-ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp-~~~~~~~~l~~ 164 (565)
T KOG0472|consen 89 ELEALKSLNVSH-NK-LSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLP-EDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHhhccc-ch-HhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCc-hHHHHHHHHHH
Confidence 334455566555 22 2334567778888999999988776 45666778888898988888776433 34457778888
Q ss_pred EEeeccccchhcc---cCCCCcEEEEcCCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCC
Q 004729 365 LEITKCRVMRVSI---RCPQLEHLSLKRSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSC 438 (733)
Q Consensus 365 L~L~~~~~~~i~~---~~~~L~~L~L~~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~ 438 (733)
|++.++.....+. .+..|++|+...|.+..+ ++.+.+|..|++.. +++.. ++ -+..|..|++|++..+.
T Consensus 165 l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~-Nki~~--lP-ef~gcs~L~Elh~g~N~- 239 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR-NKIRF--LP-EFPGCSLLKELHVGENQ- 239 (565)
T ss_pred hhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh-ccccc--CC-CCCccHHHHHHHhcccH-
Confidence 8888888776553 377788888877765544 45556666666666 34433 22 35578888888888765
Q ss_pred CChhHHHHHHHhcccccccccccCC--CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 439 VSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 439 l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
+ ..-..+...++++|..|++.++. .++++...+.+|.+|++++ +.++... ..++++ +|+.|.+.+++
T Consensus 240 i-~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is~Lp-~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 240 I-EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDISSLP-YSLGNL-HLKFLALEGNP 308 (565)
T ss_pred H-HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC-CccccCC-cccccc-eeeehhhcCCc
Confidence 2 12233445577888899998876 5667777888999999988 4455443 356777 78888888775
No 21
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.9e-10 Score=113.90 Aligned_cols=170 Identities=21% Similarity=0.361 Sum_probs=116.6
Q ss_pred CCccEEEeeccccc-----hhcccCCCCcEEEEcCCch----HHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcE
Q 004729 360 DQLRRLEITKCRVM-----RVSIRCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430 (733)
Q Consensus 360 ~~L~~L~L~~~~~~-----~i~~~~~~L~~L~L~~~~l----~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~ 430 (733)
.+|++|+|+...+. .+...|.+|+.|.|.+..+ ...+..-.+|+.|+|+.|.+++..++..++.+|..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 34666666665443 3445677777777776543 33455667899999999999988888888889999999
Q ss_pred EeccCCCCCChhHHHHHHHhcccccccccccCCCC-CcC-----CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEE
Q 004729 431 LDMSNCSCVSDESLREIALSCANLRILNSSYCPNI-SLE-----SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLE 504 (733)
Q Consensus 431 L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l-~~~-----~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~ 504 (733)
|+++.|.-.++..-..+..--++|+.|++++|... ... .-++|+|.+|+++.|..+++..+..+-+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99998885455433333334568888888887622 111 126888888888888888888888888888888888
Q ss_pred EecCCCCccccc----CCCCCcEEEeccc
Q 004729 505 LDNCNLLTSVSL----ELPRLQNIRLVHC 529 (733)
Q Consensus 505 L~~~~~l~~~~~----~l~~L~~L~L~~c 529 (733)
++.|..+..-.. ..|.|.+|++.+|
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 888865442211 1355556655554
No 22
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.92 E-value=2.3e-09 Score=121.18 Aligned_cols=185 Identities=28% Similarity=0.482 Sum_probs=106.4
Q ss_pred cCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc
Q 004729 388 KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL 467 (733)
Q Consensus 388 ~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~ 467 (733)
++..+..+...|++|++|.+..|..+++.++..+...|++|++|+++.|..+++.++..+..+|++|+.|.+..+..
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--- 333 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--- 333 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---
Confidence 33445556666888888887777777888888888888888888888888777777777777777777766654432
Q ss_pred CCCCCCCccEEEeCCCCCCc-hHHH-HHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCcccccccccccee
Q 004729 468 ESVRLPMLTVLQLHSCEGIT-SASM-AAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 545 (733)
Q Consensus 468 ~~~~l~~L~~L~L~~c~~l~-~~~~-~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l 545 (733)
++.++.+.+.+|.... +... ..+..++.++.+.+..+. ..+.++ ..
T Consensus 334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~----------------------~~~~~~------~~ 381 (482)
T KOG1947|consen 334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG----------------------ISDLGL------EL 381 (482)
T ss_pred ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh----------------------ccCcch------HH
Confidence 4445555555443332 1211 122234444444444432 222221 11
Q ss_pred ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcc
Q 004729 546 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 625 (733)
Q Consensus 546 ~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~ 625 (733)
.+..|+.|+ .. +......+..++.|+++.|...++..+..... .+.+++.+.+.+|+.+..
T Consensus 382 ~l~gc~~l~-~~----------------l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~--~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 382 SLRGCPNLT-ES----------------LELRLCRSDSLRVLNLSDCRLVTDKGLRCLAD--SCSNLKDLDLSGCRVITL 442 (482)
T ss_pred HhcCCcccc-hH----------------HHHHhccCCccceEecccCccccccchHHHhh--hhhccccCCccCcccccc
Confidence 245555542 11 11112223347777777777777666544431 166677777777766655
Q ss_pred c
Q 004729 626 V 626 (733)
Q Consensus 626 ~ 626 (733)
.
T Consensus 443 ~ 443 (482)
T KOG1947|consen 443 K 443 (482)
T ss_pred h
Confidence 4
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=1.5e-09 Score=110.27 Aligned_cols=266 Identities=20% Similarity=0.305 Sum_probs=140.3
Q ss_pred HHHhccCCCCCcEEEEecCcCCcccc----cccccCCCccEEEeeccccchhccc-CCCCcEEEEcCCchHHHhhCCCCc
Q 004729 328 FFHALADCSMLKSLNVNDATLGNGVQ----EIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRSNMAQAVLNCPLL 402 (733)
Q Consensus 328 ~~~~L~~~~~L~~L~L~~~~l~~~~~----~~~~~~~~L~~L~L~~~~~~~i~~~-~~~L~~L~L~~~~l~~~~~~~~~L 402 (733)
....+.....++.++|++|.++.... ......++|+..++++--..+.... .+.| +.+...+..+|+|
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L-------~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL-------KMLSKALLGCPKL 94 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH-------HHHHHHHhcCCce
Confidence 44455566777777777777664322 2222333444443332100000000 0000 1122345567777
Q ss_pred cEEEEecCCCCChHH---HHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEE
Q 004729 403 HLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQ 479 (733)
Q Consensus 403 ~~L~L~~c~~l~~~~---l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~ 479 (733)
++|+|+. +.+...+ +..++.+|..|++|.|.+|. +...+-..+...+..|.... ....-++|+.+.
T Consensus 95 ~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~k---------k~~~~~~Lrv~i 163 (382)
T KOG1909|consen 95 QKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNK---------KAASKPKLRVFI 163 (382)
T ss_pred eEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHh---------ccCCCcceEEEE
Confidence 7777776 4454433 44566677778888887776 66655555553333222111 122456788888
Q ss_pred eCCCCCCchHHHHHhh----CCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccCcCCce
Q 004729 480 LHSCEGITSASMAAIS----HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHR 555 (733)
Q Consensus 480 L~~c~~l~~~~~~~l~----~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~ 555 (733)
..+ +.+.+.+...++ ..+.|+.+.++.+..-.. +..+-...+..|+.|+.
T Consensus 164 ~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-------------------------G~~al~eal~~~~~Lev 217 (382)
T KOG1909|consen 164 CGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-------------------------GVTALAEALEHCPHLEV 217 (382)
T ss_pred eec-cccccccHHHHHHHHHhccccceEEEecccccCc-------------------------hhHHHHHHHHhCCccee
Confidence 887 667766554443 467888888877642110 00001112577888888
Q ss_pred eeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcC--CCCCCCccEEEeecCCCCcccc------
Q 004729 556 INITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD--GGGCPMLKSLVLDNCEGLTVVR------ 627 (733)
Q Consensus 556 L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~--~~~l~~L~~L~L~~c~~L~~~~------ 627 (733)
|++.+|.|+.. +...|......+++|++|.+++| .+.+.+...|.. ....|+|+.|.+.+|..-....
T Consensus 218 Ldl~DNtft~e---gs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 218 LDLRDNTFTLE---GSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred eecccchhhhH---HHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 88888877643 12223333345678888888888 444433322211 1347788888887773222211
Q ss_pred -ccCCCccEEecccc
Q 004729 628 -FCSTSLVSLSLVGC 641 (733)
Q Consensus 628 -~~~~sL~~L~L~~c 641 (733)
...+.|++|+|++|
T Consensus 294 ~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGN 308 (382)
T ss_pred HhcchhhHHhcCCcc
Confidence 13455555555554
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=8.7e-09 Score=104.79 Aligned_cols=228 Identities=24% Similarity=0.350 Sum_probs=140.1
Q ss_pred HHHHHHhhCCCccEEEEcCCCchh----HHHHHHhhcCCCCCEEEecCc---cCChHH-------HHhccCCCCCcEEEE
Q 004729 278 QFEDVCQRYPNATEVNIYGAPAIH----LLVMKAVSLLRNLEALTLGRG---QLGDAF-------FHALADCSMLKSLNV 343 (733)
Q Consensus 278 ~l~~~~~~~~~L~~L~L~~~~~~~----~~~~~~l~~l~~L~~L~Ls~~---~i~~~~-------~~~L~~~~~L~~L~L 343 (733)
.+.........++.+++++.. +. ..+...+...++|+..++++- ...+.. .+.|..||+|++|+|
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred hHHHHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 344555566677788887733 22 223444556677777777653 222222 234456788888888
Q ss_pred ecCcCCc----ccccccccCCCccEEEeeccccch-----------------hcccCCCCcEEEEcCCch--------HH
Q 004729 344 NDATLGN----GVQEIPINHDQLRRLEITKCRVMR-----------------VSIRCPQLEHLSLKRSNM--------AQ 394 (733)
Q Consensus 344 ~~~~l~~----~~~~~~~~~~~L~~L~L~~~~~~~-----------------i~~~~~~L~~L~L~~~~l--------~~ 394 (733)
++|-++. .+.+++.++..|++|.+.+|.+.. ....-++|+.+...+|.+ ..
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 8887764 244556678888888888887542 123456788887776533 34
Q ss_pred HhhCCCCccEEEEecCCCCChHHH---HHHHhcCCCCcEEeccCCCCCChhHHHHHH---HhcccccccccccCCCCCcC
Q 004729 395 AVLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDESLREIA---LSCANLRILNSSYCPNISLE 468 (733)
Q Consensus 395 ~~~~~~~L~~L~L~~c~~l~~~~l---~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~---~~~~~L~~L~L~~~~~l~~~ 468 (733)
.+...|.|+.+.+.. +.+...++ ...+.+|++|+.|+|..+. ++..+-..++ ..+++|+.|++++|-.-...
T Consensus 180 ~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 466778888888887 45554443 3456678888888888876 5554444443 34556777777777521111
Q ss_pred --------CCCCCCccEEEeCCCCCCchHHHHHh----hCCCCcCEEEEecCC
Q 004729 469 --------SVRLPMLTVLQLHSCEGITSASMAAI----SHSYMLEVLELDNCN 509 (733)
Q Consensus 469 --------~~~l~~L~~L~L~~c~~l~~~~~~~l----~~~~~L~~L~L~~~~ 509 (733)
....|+|+.|.+.++ .++......+ ...+.|+.|+|++|.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 114677888888774 4554443333 345777777777774
No 25
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.86 E-value=4.7e-10 Score=82.76 Aligned_cols=46 Identities=39% Similarity=0.803 Sum_probs=39.8
Q ss_pred ccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEee
Q 004729 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNF 269 (733)
Q Consensus 224 ~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l 269 (733)
|..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 3579999999999999999999999999999999988899987654
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.7e-09 Score=110.19 Aligned_cols=212 Identities=19% Similarity=0.148 Sum_probs=146.9
Q ss_pred hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCC----CC
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES----VR 471 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~----~~ 471 (733)
-+++.+|++..|.+| .+.+.+.......|++++.|+++.+---.-..+..++..+|+|+.|+++.+....+.. ..
T Consensus 117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 446777888888886 3555554456778999999999987522334577788899999999998776433222 25
Q ss_pred CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCccccccccccceeecc
Q 004729 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
+++|+.|.+++|.--.......+..+|+|+.|++..|..+..... .+..|+.|+|++-..+..-.+. .+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-------~~~ 268 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY-------KVG 268 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-------ccc
Confidence 789999999999755445445556799999999999853332221 1567778887765433332221 157
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeec
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 619 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~ 619 (733)
..|.|..|.++.+++.++...+.+.+... ..+++|+.|++.. +.+.++. .+..+..+++|+.|.+..
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt-~~f~kL~~L~i~~-N~I~~w~--sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKT-HTFPKLEYLNISE-NNIRDWR--SLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhh-cccccceeeeccc-Ccccccc--ccchhhccchhhhhhccc
Confidence 78899999999999999887776655433 3689999999999 6775432 233345577777777544
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.74 E-value=1.9e-08 Score=117.20 Aligned_cols=249 Identities=18% Similarity=0.223 Sum_probs=117.8
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
.+.+.|++.+. .+..+ +..+ .++|+.|+|++|.++ .++..+ .++|++|++++|.+.. ++.. ..+.|+.|+
T Consensus 178 ~~~~~L~L~~~-~LtsL-P~~I--p~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~Lts-LP~~--l~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI-PACI--PEQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLTS-IPAT--LPDTIQEME 247 (754)
T ss_pred cCceEEEeCCC-CcCcC-Cccc--ccCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCcccc-CChh--hhccccEEE
Confidence 34667777663 22221 1111 246888888888777 333333 3578888888776653 2211 124677777
Q ss_pred eeccccchhcccC-CCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHH
Q 004729 367 ITKCRVMRVSIRC-PQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 445 (733)
Q Consensus 367 L~~~~~~~i~~~~-~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~ 445 (733)
+++|.+..++..+ .+|+.|++++|.+..+...+ .++|+.|++++|. ++. ++
T Consensus 248 Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l-------------------------~~sL~~L~Ls~N~-Lt~--LP 299 (754)
T PRK15370 248 LSINRITELPERLPSALQSLDLFHNKISCLPENL-------------------------PEELRYLSVYDNS-IRT--LP 299 (754)
T ss_pred CcCCccCcCChhHhCCCCEEECcCCccCcccccc-------------------------CCCCcEEECCCCc-ccc--Cc
Confidence 7777665544322 23555555444443221111 1345555555543 221 11
Q ss_pred HHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC-CCCCcEE
Q 004729 446 EIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-LPRLQNI 524 (733)
Q Consensus 446 ~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~-l~~L~~L 524 (733)
.. ..++|+.|+++++..........++|+.|.+.+|. ++... ..+ .++|+.|++++|. ++.+|.. .++|+.|
T Consensus 300 ~~--lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP-~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~L 372 (754)
T PRK15370 300 AH--LPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLP-ASL--PPELQVLDVSKNQ-ITVLPETLPPTITTL 372 (754)
T ss_pred cc--chhhHHHHHhcCCccccCCccccccceeccccCCc-cccCC-hhh--cCcccEEECCCCC-CCcCChhhcCCcCEE
Confidence 00 01245555555543221111123456666666532 32211 111 2466666666663 3444432 2455555
Q ss_pred EeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCC
Q 004729 525 RLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT 596 (733)
Q Consensus 525 ~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt 596 (733)
++.++ .++.+.- .--..|+.|++.+|+|..+. +.+..+...++++..|+|.+ +.++
T Consensus 373 dLs~N-~Lt~LP~----------~l~~sL~~LdLs~N~L~~LP----~sl~~~~~~~~~l~~L~L~~-Npls 428 (754)
T PRK15370 373 DVSRN-ALTNLPE----------NLPAALQIMQASRNNLVRLP----ESLPHFRGEGPQPTRIIVEY-NPFS 428 (754)
T ss_pred ECCCC-cCCCCCH----------hHHHHHHHHhhccCCcccCc----hhHHHHhhcCCCccEEEeeC-CCcc
Confidence 55554 2222110 00124566666666665442 23444444556677777776 4454
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.66 E-value=5.1e-08 Score=113.72 Aligned_cols=239 Identities=19% Similarity=0.155 Sum_probs=130.0
Q ss_pred CCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEE
Q 004729 426 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505 (733)
Q Consensus 426 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L 505 (733)
.+...|++++.. ++. ++.. -.+.|+.|+++++..........++|++|+++++ .++... ..+ .++|+.|+|
T Consensus 178 ~~~~~L~L~~~~-Lts--LP~~--Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N-~LtsLP-~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILG-LTT--IPAC--IPEQITTLILDNNELKSLPENLQGNIKTLYANSN-QLTSIP-ATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCC-cCc--CCcc--cccCCcEEEecCCCCCcCChhhccCCCEEECCCC-ccccCC-hhh--hccccEEEC
Confidence 356778887754 332 2211 1246888888776532222223457888888874 344321 111 246788888
Q ss_pred ecCCCCcccccCC-CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCC
Q 004729 506 DNCNLLTSVSLEL-PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCL 584 (733)
Q Consensus 506 ~~~~~l~~~~~~l-~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L 584 (733)
++|. +..+|..+ .+|+.|.+.++ +++.+. -.-+++|+.|++++|.|+.+.. .+ .++|
T Consensus 249 s~N~-L~~LP~~l~s~L~~L~Ls~N-~L~~LP----------~~l~~sL~~L~Ls~N~Lt~LP~----~l------p~sL 306 (754)
T PRK15370 249 SINR-ITELPERLPSALQSLDLFHN-KISCLP----------ENLPEELRYLSVYDNSIRTLPA----HL------PSGI 306 (754)
T ss_pred cCCc-cCcCChhHhCCCCEEECcCC-ccCccc----------cccCCCCcEEECCCCccccCcc----cc------hhhH
Confidence 8774 44555443 35666666432 333221 1123467777777777765421 11 1357
Q ss_pred cEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-cCCCccEEeccccccccccccc-cccccEEecccc
Q 004729 585 QEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTSLVSLSLVGCRAITALELK-CPILEKVCLDGC 662 (733)
Q Consensus 585 ~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-~~~sL~~L~L~~c~~L~~l~~~-~p~L~~L~L~~c 662 (733)
+.|++++ +.++... . ...++|+.|++.+| .++.++. .+++|+.|++++| .|+.++.. .++|++|+|++|
T Consensus 307 ~~L~Ls~-N~Lt~LP-~-----~l~~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N 377 (754)
T PRK15370 307 THLNVQS-NSLTALP-E-----TLPPGLKTLEAGEN-ALTSLPASLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRN 377 (754)
T ss_pred HHHHhcC-CccccCC-c-----cccccceeccccCC-ccccCChhhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCC
Confidence 7777777 3554211 1 12357777877776 3555543 3467777777774 45555432 356777777774
Q ss_pred ccccccc-ccccCCcEEEecCCCCccccccCc-------ccccEEEecCCCC
Q 004729 663 DHIESAS-FVPVALQSLNLGICPKLSTLGIEA-------LHMVVLELKGCGV 706 (733)
Q Consensus 663 ~~L~~~~-~~~~~L~~L~L~~c~~L~~l~~~~-------~~L~~L~l~~c~~ 706 (733)
.|+.+. ..+.+|+.|+++++ +|+.+|... +++..|.+.+++.
T Consensus 378 -~Lt~LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 378 -ALTNLPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred -cCCCCCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 344321 12335667777665 366555321 2355666666553
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=1.4e-07 Score=111.76 Aligned_cols=311 Identities=23% Similarity=0.320 Sum_probs=178.4
Q ss_pred CCCccEEEeeccccchhc--ccCCCCcEEEEcCCc--hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcE
Q 004729 359 HDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSN--MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 430 (733)
Q Consensus 359 ~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~~--l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~ 430 (733)
....++..+.++....++ ..+|+|++|-+.++. +. .++..+|.|+.|++++|..+. .++..++.+-+|+.
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhc
Confidence 355666666666655444 457789899888875 33 447789999999999976544 36677778889999
Q ss_pred EeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCC---CCCCCccEEEeCCCC-CCchHHHHHhhCCCCcCEEEEe
Q 004729 431 LDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQLHSCE-GITSASMAAISHSYMLEVLELD 506 (733)
Q Consensus 431 L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~---~~l~~L~~L~L~~c~-~l~~~~~~~l~~~~~L~~L~L~ 506 (733)
|+++++. +. .++.-..++.+|.+|++.....+.... ..+++|++|.+.... ..+...+..+..+.+|+.+.+.
T Consensus 600 L~L~~t~-I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 600 LDLSDTG-IS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccCCC-cc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999876 44 345555577899999998776443322 258999999998743 3334444455566667766665
Q ss_pred cCCCCcccc-cCCCCCcEE----EeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcC
Q 004729 507 NCNLLTSVS-LELPRLQNI----RLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQC 581 (733)
Q Consensus 507 ~~~~l~~~~-~~l~~L~~L----~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~ 581 (733)
......... ...+.|..+ .+..|...+ ....+....+|+.|.+.++.+.+......+...... .|
T Consensus 677 ~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~---------~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~-~f 746 (889)
T KOG4658|consen 677 ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRT---------LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL-CF 746 (889)
T ss_pred cchhHhHhhhhhhHHHHHHhHhhhhcccccce---------eecccccccCcceEEEEcCCCchhhcccccccchhh-hH
Confidence 433200000 112222222 111111000 011255667778888777766544332211111111 35
Q ss_pred CCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccccc---CCCccEEeccccccccccccccccccEE-
Q 004729 582 QCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFC---STSLVSLSLVGCRAITALELKCPILEKV- 657 (733)
Q Consensus 582 ~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~---~~sL~~L~L~~c~~L~~l~~~~p~L~~L- 657 (733)
+++..+.+.+|..+.+.....| .|+|+.|.+..|+.++++... +..++.+. ..+++++.+
T Consensus 747 ~~l~~~~~~~~~~~r~l~~~~f-----~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i-----------~~f~~~~~l~ 810 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDLTWLLF-----APHLTSLSLVSCRLLEDIIPKLKALLELKELI-----------LPFNKLEGLR 810 (889)
T ss_pred HHHHHHHhhccccccccchhhc-----cCcccEEEEecccccccCCCHHHHhhhcccEE-----------ecccccccce
Confidence 6777777778877766554444 688899998888888777542 22222211 112222222
Q ss_pred eccccccccc---ccccccCCcEEEecCCCCccccccCcccccEEEecCC
Q 004729 658 CLDGCDHIES---ASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC 704 (733)
Q Consensus 658 ~L~~c~~L~~---~~~~~~~L~~L~L~~c~~L~~l~~~~~~L~~L~l~~c 704 (733)
.+.+...+.. ..+.-+.++.+.+..||++..+|. +.++.+.+|
T Consensus 811 ~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~----~~~~~i~~~ 856 (889)
T KOG4658|consen 811 MLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL----LSTLTIVGC 856 (889)
T ss_pred eeecCCCCceeEecccCccchhheehhcCcccccCcc----ccccceecc
Confidence 1222222221 122222367777777888887754 444556665
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.2e-08 Score=104.56 Aligned_cols=181 Identities=23% Similarity=0.229 Sum_probs=108.6
Q ss_pred cCCCCCEEEecCccCChHHH-HhccCCCCCcEEEEecCcCCc--ccccccccCCCccEEEeeccccchhcccCCCCcEEE
Q 004729 310 LLRNLEALTLGRGQLGDAFF-HALADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 386 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~-~~L~~~~~L~~L~L~~~~l~~--~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~ 386 (733)
.+..|+++.|.++.+.+.+- .....|++++.|+|+.|-+.. .+..+...+|+|+.|+++.|.+.....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--------- 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--------- 189 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc---------
Confidence 44455555555555443322 223346666666666554432 233344445555555555543221110
Q ss_pred EcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCC
Q 004729 387 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS 466 (733)
Q Consensus 387 L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~ 466 (733)
+. ....+++|+.|.+++| +++-..+..++..+|+|+.|.+..+..+....... ..+..|++|+|+++..+.
T Consensus 190 ---s~---~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 190 ---SN---TTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLID 260 (505)
T ss_pred ---cc---chhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccc
Confidence 00 0125789999999998 58888888899999999999999885333222221 134689999999988776
Q ss_pred cCCC----CCCCccEEEeCCCCCCchHHHHH------hhCCCCcCEEEEecCC
Q 004729 467 LESV----RLPMLTVLQLHSCEGITSASMAA------ISHSYMLEVLELDNCN 509 (733)
Q Consensus 467 ~~~~----~l~~L~~L~L~~c~~l~~~~~~~------l~~~~~L~~L~L~~~~ 509 (733)
+..+ .+|.|+.|.+..| ++.+..... ...++.|+.|++..|.
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 6533 6888888888874 344332211 2346778888887774
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.34 E-value=4.3e-08 Score=101.10 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=81.6
Q ss_pred CccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEec-CcCCcccccccccCCCccEEE
Q 004729 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~ 366 (733)
....+.+.. +.+..+...+|+.+++|++|||++|.|+...+.++..+++|.+|-+.+ |.+.+.....+..+..|+.|.
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 345566655 566666677788888888888888888877788888887777776665 667666566666777777777
Q ss_pred eeccccc----hhcccCCCCcEEEEcCCchHHH----hhCCCCccEEEEec
Q 004729 367 ITKCRVM----RVSIRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIAS 409 (733)
Q Consensus 367 L~~~~~~----~i~~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~ 409 (733)
+.-|.+. .....+++|..|.+.+|.+..+ +.....++.+.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 7665544 3335577777777777766544 23444555555544
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.33 E-value=6.4e-07 Score=63.77 Aligned_cols=40 Identities=38% Similarity=0.615 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeE
Q 004729 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRC 266 (733)
Q Consensus 227 LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~ 266 (733)
||+|++.+||.+|+..|+.++++|||+|+.++..+.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999998888864
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.25 E-value=1.3e-06 Score=103.72 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=55.9
Q ss_pred cCCCCCEEEecCcc--CChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc---CCCCcE
Q 004729 310 LLRNLEALTLGRGQ--LGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR---CPQLEH 384 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~--i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~---~~~L~~ 384 (733)
.++.|++|-+..+. +.......+..+|.|+.|+|++|.-...+|...+.+-+|+.|+++++.+..++.. +..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 44556666665553 2222233345567777777776665556666666667777777777666655543 334455
Q ss_pred EEEcCCch----HHHhhCCCCccEEEEec
Q 004729 385 LSLKRSNM----AQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 385 L~L~~~~l----~~~~~~~~~L~~L~L~~ 409 (733)
|++..+.. ..+...+++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 55544321 22334466677776665
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.19 E-value=7e-08 Score=99.54 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeec-cccchhcc----cCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK-CRVMRVSI----RCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~-~~~~~i~~----~~~~L~~L~ 386 (733)
+...+|+|..|+|+...+.+++.+++|++|+|++|.+....+..+.++++|.+|-+.+ |.+..++. ++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3567899999999988888899999999999999999888888888888888877766 65554442 334444444
Q ss_pred EcCCc----hHHHhhCCCCccEEEEec
Q 004729 387 LKRSN----MAQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 387 L~~~~----l~~~~~~~~~L~~L~L~~ 409 (733)
+.-+. ....+..+++|..|.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccc
Confidence 43322 223455555665555554
No 35
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.13 E-value=5.4e-07 Score=66.69 Aligned_cols=43 Identities=33% Similarity=0.698 Sum_probs=35.2
Q ss_pred cccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCee
Q 004729 223 IRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265 (733)
Q Consensus 223 ~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~ 265 (733)
.+.+||+|++.+||+||+..|+.++++|||+|+.++.+..+|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 3678999999999999999999999999999999988755543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.04 E-value=2.1e-06 Score=82.07 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=17.8
Q ss_pred cCCCCCEEEecCccCChHHHHhcc-CCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEH 384 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~ 384 (733)
...++++|+|.++.|+. ...++ .+.+|+.|++++|.+... . -...+++|+.|++++|.+..+. ..+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34456777777777763 23444 456777777777766532 1 1334566666666666655432 13455555
Q ss_pred EEEcCCch
Q 004729 385 LSLKRSNM 392 (733)
Q Consensus 385 L~L~~~~l 392 (733)
|.+++|.+
T Consensus 93 L~L~~N~I 100 (175)
T PF14580_consen 93 LYLSNNKI 100 (175)
T ss_dssp EE-TTS--
T ss_pred EECcCCcC
Confidence 55555444
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.5e-05 Score=85.45 Aligned_cols=160 Identities=17% Similarity=0.245 Sum_probs=94.8
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
+..|++++.|++.++.|+.+. ..-++|+.|.+++|+.++... ..+ +++|+.|.+.+|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-----------~LP~sLtsL~Lsnc~nLtsLP-~~L-----P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-----------VLPNELTEITIENCNNLTTLP-GSI-----PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-----------CCCCCCcEEEccCCCCcccCC-chh-----hhhhhheEccCccccccc
Confidence 445677778877777666542 112468888888888774321 111 458888888888777655
Q ss_pred cccCCCccEEeccccccccccccccccccEEeccccccccc---ccccccCCcEEEecCCCCccccccCc-ccccEEEec
Q 004729 627 RFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIES---ASFVPVALQSLNLGICPKLSTLGIEA-LHMVVLELK 702 (733)
Q Consensus 627 ~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~c~~L~~---~~~~~~~L~~L~L~~c~~L~~l~~~~-~~L~~L~l~ 702 (733)
+ .+|+.|.+.+ ..+..+..-.++|++|.+.++..... ....|.+|++|.+++|..+. +|... ..|+.|.+.
T Consensus 111 P---~sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls 185 (426)
T PRK15386 111 P---ESVRSLEIKG-SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLH 185 (426)
T ss_pred c---cccceEEeCC-CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-CcccccccCcEEEec
Confidence 3 5677777753 33323322224677787754332211 12457788899988887553 34322 368888886
Q ss_pred CCC--CCCccCCCCC-CccEEeccCccccc
Q 004729 703 GCG--VLSDAYINCP-LLTSLDASFCRCVA 729 (733)
Q Consensus 703 ~c~--~L~~~~~~~p-~L~~L~l~~C~~L~ 729 (733)
.+. .+.-....+| ++ .|++.+|-.+.
T Consensus 186 ~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 186 IEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred ccccccccCccccccccc-EechhhhcccC
Confidence 643 2222223443 56 77777775543
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.02 E-value=3.8e-06 Score=80.26 Aligned_cols=100 Identities=22% Similarity=0.373 Sum_probs=35.4
Q ss_pred CccEEEEcCCCchhHHHHHHhh-cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 288 NATEVNIYGAPAIHLLVMKAVS-LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
+++.|++.+. .+... ..++ .+.+|+.|+|++|.+.. ...+..+++|++|++++|.+......+...+++|++|.
T Consensus 20 ~~~~L~L~~n-~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGN-QISTI--ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccc-ccccc--cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4678888873 33332 3344 57899999999998874 34566789999999999998865444445789999999
Q ss_pred eeccccchhc-----ccCCCCcEEEEcCCch
Q 004729 367 ITKCRVMRVS-----IRCPQLEHLSLKRSNM 392 (733)
Q Consensus 367 L~~~~~~~i~-----~~~~~L~~L~L~~~~l 392 (733)
+.+|.+..+. ..+|+|+.|+|.+|.+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 9999765322 3455555555555544
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=1.5e-05 Score=85.45 Aligned_cols=133 Identities=20% Similarity=0.306 Sum_probs=97.4
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-cCCCccEEeccccccccccccccccccEEe
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTSLVSLSLVGCRAITALELKCPILEKVC 658 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~ 658 (733)
.|++++.|++++| .++. ++ .-.++|++|.+.+|..++.++. .+.+|++|.+++|..+..++ ++|++|+
T Consensus 50 ~~~~l~~L~Is~c-~L~s-----LP--~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDC-DIES-----LP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCC-CCcc-----cC--CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEE
Confidence 5799999999998 5653 33 2245799999999999988774 56799999999998888766 5688888
Q ss_pred cccccccccccccccCCcEEEecCCCCc--ccccc-CcccccEEEecCCCCCCccCCCCC-CccEEeccCc
Q 004729 659 LDGCDHIESASFVPVALQSLNLGICPKL--STLGI-EALHMVVLELKGCGVLSDAYINCP-LLTSLDASFC 725 (733)
Q Consensus 659 L~~c~~L~~~~~~~~~L~~L~L~~c~~L--~~l~~-~~~~L~~L~l~~c~~L~~~~~~~p-~L~~L~l~~C 725 (733)
+.+ ..+..+...|.+|+.|.+..+... ..++. -..+|+.|.+.+|..+.. ....| +|+.|.++.+
T Consensus 119 L~~-n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L-P~~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKG-SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL-PEKLPESLQSITLHIE 187 (426)
T ss_pred eCC-CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccC-cccccccCcEEEeccc
Confidence 864 566666778889999998543322 11221 124799999999997642 22344 8999998765
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=3e-06 Score=84.59 Aligned_cols=186 Identities=18% Similarity=0.208 Sum_probs=110.1
Q ss_pred cCCCCCEEEecCccCCh--HHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEE
Q 004729 310 LLRNLEALTLGRGQLGD--AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 387 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~--~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L 387 (733)
.+.+++++||.+|.+++ .....+.++|.|++|+|+.|++...+........+|+.|-|.+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L--------------- 133 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL--------------- 133 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC---------------
Confidence 66788888888888874 3455567788888888888888777766665667777777766542
Q ss_pred cCCchHHHhhCCCCccEEEEecCC----CCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 388 KRSNMAQAVLNCPLLHLLDIASCH----KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 388 ~~~~l~~~~~~~~~L~~L~L~~c~----~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
.+.....++..+|.++.|.++... ++.+..... --+.++.|++..|....-.....+...+|++..+-+..|+
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 122222334444444444443310 111111111 1135566666666522222344455567888888877775
Q ss_pred CCCc----CCCCCCCccEEEeCCCCCCch-HHHHHhhCCCCcCEEEEecCCCCccc
Q 004729 464 NISL----ESVRLPMLTVLQLHSCEGITS-ASMAAISHSYMLEVLELDNCNLLTSV 514 (733)
Q Consensus 464 ~l~~----~~~~l~~L~~L~L~~c~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~ 514 (733)
.-+. .+-.+|.+--|++.. +.+.+ +.+..+..++.|..|.+.+++....+
T Consensus 211 lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 211 LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 2211 122466666777776 44544 44567888999999999887655443
No 41
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.93 E-value=4.7e-08 Score=89.63 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=33.2
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccc
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 371 (733)
.+.+++.|.|++|.++ ..++.+..+.+|+.|++.+|++.. ++.-...+++|++|++.-++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhh
Confidence 3445666677777666 444555666666666666665542 22223345555555554443
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.88 E-value=6e-06 Score=82.47 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=79.9
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
+..+..|+.+++++|.++.+ ++++. ..|.++.|+++. +.++.. ..++.+++|+.|+|+++. +..+
T Consensus 280 ~dTWq~LtelDLS~N~I~~i----DESvK----L~Pkir~L~lS~-N~i~~v-----~nLa~L~~L~~LDLS~N~-Ls~~ 344 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI----DESVK----LAPKLRRLILSQ-NRIRTV-----QNLAELPQLQLLDLSGNL-LAEC 344 (490)
T ss_pred cchHhhhhhccccccchhhh----hhhhh----hccceeEEeccc-cceeee-----hhhhhcccceEeecccch-hHhh
Confidence 45566788899999988765 34444 567999999998 566532 223568899999998863 3333
Q ss_pred ---cccCCCccEEecccccccccccc--ccccccEEeccccccccc------ccccccCCcEEEecCCC
Q 004729 627 ---RFCSTSLVSLSLVGCRAITALEL--KCPILEKVCLDGCDHIES------ASFVPVALQSLNLGICP 684 (733)
Q Consensus 627 ---~~~~~sL~~L~L~~c~~L~~l~~--~~p~L~~L~L~~c~~L~~------~~~~~~~L~~L~L~~c~ 684 (733)
-..+.+++.|.+++ +.|+++.. .+-+|+.|++++ ++++. +|..| -|+++.+.+.|
T Consensus 345 ~Gwh~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LP-CLE~l~L~~NP 410 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLP-CLETLRLTGNP 410 (490)
T ss_pred hhhHhhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccc-cchhhHHHhccccccc-HHHHHhhcCCC
Confidence 33788888888888 56776663 577888888888 44332 22222 45555555554
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=3.4e-05 Score=89.49 Aligned_cols=153 Identities=22% Similarity=0.333 Sum_probs=113.9
Q ss_pred cCCCCCEEEecCc-cCChHHHHhccC-CCCCcEEEEecCcCC-cccccccccCCCccEEEeeccccchh--cccCCCCcE
Q 004729 310 LLRNLEALTLGRG-QLGDAFFHALAD-CSMLKSLNVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRV--SIRCPQLEH 384 (733)
Q Consensus 310 ~l~~L~~L~Ls~~-~i~~~~~~~L~~-~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~~~~~~i--~~~~~~L~~ 384 (733)
.-.+|++|++++. .+...++..++. +|+|++|.+.+..+. +....+..+||+|..||++++++..+ ..++++|+.
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 4568999999875 455567777765 799999999987754 44667788999999999999987654 357888888
Q ss_pred EEEcCCchHH-----HhhCCCCccEEEEecCCCCChHHH-H---HHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccc
Q 004729 385 LSLKRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAI-R---LAATSCPQLESLDMSNCSCVSDESLREIALSCANLR 455 (733)
Q Consensus 385 L~L~~~~l~~-----~~~~~~~L~~L~L~~c~~l~~~~l-~---~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~ 455 (733)
|.+.+-.+.. .+-++++|+.|+++.-.......+ . .....+|+|+.|+.++.. ++...+..+...-|+|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHh
Confidence 8888754442 355799999999998444333311 1 122347999999999877 88888888888888888
Q ss_pred ccccccCC
Q 004729 456 ILNSSYCP 463 (733)
Q Consensus 456 ~L~L~~~~ 463 (733)
.+.+-+|.
T Consensus 279 ~i~~~~~~ 286 (699)
T KOG3665|consen 279 QIAALDCL 286 (699)
T ss_pred hhhhhhhh
Confidence 88766543
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=3.8e-05 Score=89.15 Aligned_cols=83 Identities=24% Similarity=0.254 Sum_probs=43.5
Q ss_pred HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc----CCC
Q 004729 395 AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL----ESV 470 (733)
Q Consensus 395 ~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~----~~~ 470 (733)
+...+|.|+.|.+.+ ..+....+..+..++|+|..||++++. +++. .-..++++|+.|.+.+-..... ...
T Consensus 143 ig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 344566666666666 334444455666666666666666655 3332 1112455666666554332221 223
Q ss_pred CCCCccEEEeCC
Q 004729 471 RLPMLTVLQLHS 482 (733)
Q Consensus 471 ~l~~L~~L~L~~ 482 (733)
.+.+|+.|+++.
T Consensus 218 ~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 218 NLKKLRVLDISR 229 (699)
T ss_pred cccCCCeeeccc
Confidence 556666666665
No 45
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.70 E-value=1.2e-06 Score=80.68 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=93.9
Q ss_pred CCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCC
Q 004729 334 DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKL 413 (733)
Q Consensus 334 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l 413 (733)
.+.+++.|.|++|.++...+ -+..+.+|+.|++.++.+..++. .++.+|+|+.|+++- +.+
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~lp~-----------------~issl~klr~lnvgm-nrl 91 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEELPT-----------------SISSLPKLRILNVGM-NRL 91 (264)
T ss_pred chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhcCh-----------------hhhhchhhhheecch-hhh
Confidence 45666777777776653322 23345556666655554443332 234455566665553 222
Q ss_pred ChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC--CCCcCCCCCCCccEEEeCCCCCCchHHH
Q 004729 414 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASM 491 (733)
Q Consensus 414 ~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~~l~~L~~L~L~~c~~l~~~~~ 491 (733)
. .++.-+..+|.|+.|++..+. +....++--+-.+..|+-|.++++. .++...+++.+|+.|.+.... +- ...
T Consensus 92 ~--~lprgfgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll-~lp 166 (264)
T KOG0617|consen 92 N--ILPRGFGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LL-SLP 166 (264)
T ss_pred h--cCccccCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hh-hCc
Confidence 1 123344566777777777655 5554444333356677778887765 455666788888888887732 22 233
Q ss_pred HHhhCCCCcCEEEEecCCCCcccccC
Q 004729 492 AAISHSYMLEVLELDNCNLLTSVSLE 517 (733)
Q Consensus 492 ~~l~~~~~L~~L~L~~~~~l~~~~~~ 517 (733)
..++.+..|++|+|.++. ++.+|..
T Consensus 167 keig~lt~lrelhiqgnr-l~vlppe 191 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNR-LTVLPPE 191 (264)
T ss_pred HHHHHHHHHHHHhcccce-eeecChh
Confidence 567778889999999884 5555543
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.68 E-value=0.00088 Score=66.58 Aligned_cols=88 Identities=18% Similarity=0.333 Sum_probs=59.2
Q ss_pred hCCCccEEEEcCCCchhHH----HHHHhhcCCCCCEEEecCcc---CChH-------HHHhccCCCCCcEEEEecCcCCc
Q 004729 285 RYPNATEVNIYGAPAIHLL----VMKAVSLLRNLEALTLGRGQ---LGDA-------FFHALADCSMLKSLNVNDATLGN 350 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~----~~~~l~~l~~L~~L~Ls~~~---i~~~-------~~~~L~~~~~L~~L~L~~~~l~~ 350 (733)
....++.++++|.. +..- ....++.-.+|+...++.-. ..+. +.+.+-+||+|+..+|++|.++.
T Consensus 28 ~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 36678888888843 3332 33445566778888776532 2222 34456689999999999998775
Q ss_pred cc----ccccccCCCccEEEeeccccc
Q 004729 351 GV----QEIPINHDQLRRLEITKCRVM 373 (733)
Q Consensus 351 ~~----~~~~~~~~~L~~L~L~~~~~~ 373 (733)
.. ..++.....|++|.+++|.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 43 345567788889988888754
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=7.8e-05 Score=74.78 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=116.4
Q ss_pred HHHHHHhhCCCccEEEEcCCCchhHH--HHHHhhcCCCCCEEEecCccCChHHHHhc-cCCCCCcEEEEecCcCC-cccc
Q 004729 278 QFEDVCQRYPNATEVNIYGAPAIHLL--VMKAVSLLRNLEALTLGRGQLGDAFFHAL-ADCSMLKSLNVNDATLG-NGVQ 353 (733)
Q Consensus 278 ~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L-~~~~~L~~L~L~~~~l~-~~~~ 353 (733)
.+..+...+..++.+++.+ +.+.++ +...+.++|+|+.|+|+.|.+... ...+ ....+|++|-|.+..+. ....
T Consensus 62 d~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred hHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhh
Confidence 4455555667788888877 334333 344556889999999998877632 2222 35678888888887654 2344
Q ss_pred cccccCCCccEEEeeccccch-------hcccCCCCcEEEEcCCchHH------HhhCCCCccEEEEecCCCCChHHHHH
Q 004729 354 EIPINHDQLRRLEITKCRVMR-------VSIRCPQLEHLSLKRSNMAQ------AVLNCPLLHLLDIASCHKLSDAAIRL 420 (733)
Q Consensus 354 ~~~~~~~~L~~L~L~~~~~~~-------i~~~~~~L~~L~L~~~~l~~------~~~~~~~L~~L~L~~c~~l~~~~l~~ 420 (733)
.+...+|.+++|.++.|+... +....+.+++|++..|.... +..-||++..+.+..|+ +.+..-..
T Consensus 140 s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek 218 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEK 218 (418)
T ss_pred hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcc
Confidence 556677888888888775432 22334567777776665443 34568889888888875 44443334
Q ss_pred HHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 421 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
-...+|.+.-|++.... +.+..-..-...++.|..|.+...+
T Consensus 219 ~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCc
Confidence 44556777777887765 5444333333478888888888766
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.58 E-value=0.0007 Score=67.28 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=57.2
Q ss_pred eeEEeeCCCCCCHHHHHHHHh---hCCCccEEEEcCCC--chh-------HHHHHHhhcCCCCCEEEecCccCChHHHH-
Q 004729 264 WRCLNFENRKISVEQFEDVCQ---RYPNATEVNIYGAP--AIH-------LLVMKAVSLLRNLEALTLGRGQLGDAFFH- 330 (733)
Q Consensus 264 w~~l~l~~~~~~~~~l~~~~~---~~~~L~~L~L~~~~--~~~-------~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~- 330 (733)
...++++...+..+....++. ...+++..+++... ... ....+++..||+|+.++|+.|.|+..++.
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 346777777776665555444 33445555554311 111 12345677999999999999988755444
Q ss_pred ---hccCCCCCcEEEEecCcCCc
Q 004729 331 ---ALADCSMLKSLNVNDATLGN 350 (733)
Q Consensus 331 ---~L~~~~~L~~L~L~~~~l~~ 350 (733)
.+++...|++|.+++|.+++
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCc
Confidence 45678999999999998764
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.53 E-value=4.9e-05 Score=59.31 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=40.9
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 371 (733)
|+|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467777777777765444566677777777777777665555566667777777766654
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.46 E-value=3.3e-05 Score=77.32 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc---ccCCCCcEEEEc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLSLK 388 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~---~~~~~L~~L~L~ 388 (733)
+.|+++||++|.|+ .+-.++.-.|.++.|+++.|.+... .. ...+++|++|++++|.+..+. ..+.+++.|.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 45677788777766 3344445567777777777765421 11 345566666666665443322 223444444444
Q ss_pred CCch
Q 004729 389 RSNM 392 (733)
Q Consensus 389 ~~~l 392 (733)
+|.+
T Consensus 361 ~N~i 364 (490)
T KOG1259|consen 361 QNKI 364 (490)
T ss_pred hhhH
Confidence 4433
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.05 E-value=0.00077 Score=74.23 Aligned_cols=166 Identities=23% Similarity=0.229 Sum_probs=84.9
Q ss_pred CCCCcEEEEecCcCCcccccccccC-CCccEEEeeccccchh---cccCCCCcEEEEcCCchHHHhh---CCCCccEEEE
Q 004729 335 CSMLKSLNVNDATLGNGVQEIPINH-DQLRRLEITKCRVMRV---SIRCPQLEHLSLKRSNMAQAVL---NCPLLHLLDI 407 (733)
Q Consensus 335 ~~~L~~L~L~~~~l~~~~~~~~~~~-~~L~~L~L~~~~~~~i---~~~~~~L~~L~L~~~~l~~~~~---~~~~L~~L~L 407 (733)
.+.++.|.+.++.+... +...... .+|+.|++.++.+..+ ...+++|+.|.+++|.+..+.. ..++|+.|.+
T Consensus 115 ~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccC-ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 35566666665554422 2222233 2566666666665554 2456666666666666655433 5666666666
Q ss_pred ecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCC--cCCCCCCCccEEEeCCCCC
Q 004729 408 ASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS--LESVRLPMLTVLQLHSCEG 485 (733)
Q Consensus 408 ~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~--~~~~~l~~L~~L~L~~c~~ 485 (733)
++ ..+.+.. ........|++|.+.++..+.. ......+.++..+.+....... .....+++|+.|++.+ +.
T Consensus 194 s~-N~i~~l~--~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~ 266 (394)
T COG4886 194 SG-NKISDLP--PEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQ 266 (394)
T ss_pred cC-CccccCc--hhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeeeccchhccccccceecccc-cc
Confidence 66 3344322 2212233466666666531211 1112244555555544433222 3333556677777766 34
Q ss_pred CchHHHHHhhCCCCcCEEEEecCCC
Q 004729 486 ITSASMAAISHSYMLEVLELDNCNL 510 (733)
Q Consensus 486 l~~~~~~~l~~~~~L~~L~L~~~~~ 510 (733)
+.+... ++...+|+.|+++++..
T Consensus 267 i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 ISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccc--ccccCccCEEeccCccc
Confidence 444433 55666777777766543
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.98 E-value=0.0008 Score=52.40 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred CCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcCC
Q 004729 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS 390 (733)
Q Consensus 336 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~~ 390 (733)
|+|++|++++|.+.......+..+++|++|++++|.+..+. ..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 57889999988877666667778888888888888765443 34455555555544
No 53
>PLN03150 hypothetical protein; Provisional
Probab=96.90 E-value=0.0013 Score=76.44 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=65.4
Q ss_pred ccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEee
Q 004729 289 ATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 368 (733)
Q Consensus 289 L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~ 368 (733)
++.|+|.+ ..+....+..+..+++|+.|+|++|.+...++..+..+++|+.|+|++|.+...++.....+++|+.|+|+
T Consensus 420 v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCC-CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 66777776 34455556677788888888888888877777778888888888888888887777777788888888888
Q ss_pred ccccc
Q 004729 369 KCRVM 373 (733)
Q Consensus 369 ~~~~~ 373 (733)
+|.+.
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 87653
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.80 E-value=0.0017 Score=61.97 Aligned_cols=96 Identities=21% Similarity=0.347 Sum_probs=64.9
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc-----ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-----IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~-----~~~~~L~~L~ 386 (733)
.+...+||++|.+.. ...|..+++|.+|.|.+|.++...+.+...+++|+.|.+.+|++..+. ..||+|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456678888776642 344556788888888888887777777777788888888887766443 4567777777
Q ss_pred EcCCchHHH-------hhCCCCccEEEEec
Q 004729 387 LKRSNMAQA-------VLNCPLLHLLDIAS 409 (733)
Q Consensus 387 L~~~~l~~~-------~~~~~~L~~L~L~~ 409 (733)
+-+|.+..- +..+|+|+.|++..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 766665532 34456666666555
No 55
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.0018 Score=61.88 Aligned_cols=67 Identities=25% Similarity=0.411 Sum_probs=58.5
Q ss_pred hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
+..++.++.|.+.+|..+.+.++..+..-.++|+.|+|++|..||+.++.-+. .+++|+.|.+.+-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCch
Confidence 56778899999999999999999888887899999999999999999988776 78888888887654
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00077 Score=64.39 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=46.8
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cCCCccEEeccccccc
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAI 644 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L 644 (733)
.++.++.|.+.+|..+.|..++.+. +..|+|+.|+|++|+.|++.+. .+++|+.|.|.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 5678888888888888888777764 4677888888888888888764 5677777777665443
No 57
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.52 E-value=0.0012 Score=66.74 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=39.5
Q ss_pred ccCCCHHHHHHHHhc-----CChhhHHHHHHHHHHHHHhhcCCCCeeEE
Q 004729 224 RMDLTDDLLHMVFSF-----LDYVDLCRAAIVCRQWRAASAHEDFWRCL 267 (733)
Q Consensus 224 ~~~LP~ElL~~If~~-----L~~~dl~~~~lVck~W~~l~~~~~lw~~l 267 (733)
+.+||||||..||.. |+.+++.++++|||.|+..+.+|.+|+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 679999999999975 45689999999999999999999999853
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.30 E-value=0.0066 Score=70.76 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=42.7
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeecccc
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 372 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~ 372 (733)
++.|+|+++.+...++..+..+++|+.|+|++|.+...++.....+++|+.|+|++|.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC
Confidence 66778888877777777777788888888888877766665566666666666666643
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.29 E-value=0.0019 Score=65.69 Aligned_cols=51 Identities=24% Similarity=0.606 Sum_probs=46.5
Q ss_pred CcccccccCCC----HHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEe
Q 004729 218 TEDLEIRMDLT----DDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLN 268 (733)
Q Consensus 218 ~~~~~~~~~LP----~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~ 268 (733)
.-..|++..|| +++.+.||+||+..+++.|.+|||+|+++..++.+|+.+-
T Consensus 69 mLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 69 MLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 34568888999 9999999999999999999999999999999999999764
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.28 E-value=0.00042 Score=77.40 Aligned_cols=81 Identities=26% Similarity=0.401 Sum_probs=43.1
Q ss_pred CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCcccccccccccee-ecccC
Q 004729 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNC 550 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l-~l~~c 550 (733)
+|.|+.|+|+. +.+++.. .+..++.|++|||+.|. +.. +-.+...+|. +..+.++++.++.+ .+.++
T Consensus 186 l~ale~LnLsh-Nk~~~v~--~Lr~l~~LkhLDlsyN~-L~~-------vp~l~~~gc~-L~~L~lrnN~l~tL~gie~L 253 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKVD--NLRRLPKLKHLDLSYNC-LRH-------VPQLSMVGCK-LQLLNLRNNALTTLRGIENL 253 (1096)
T ss_pred HHHhhhhccch-hhhhhhH--HHHhcccccccccccch-hcc-------ccccchhhhh-heeeeecccHHHhhhhHHhh
Confidence 45666677766 4444443 56667777777777663 222 2223333333 33344444444444 35566
Q ss_pred cCCceeeeccCccc
Q 004729 551 AALHRINITSNSLQ 564 (733)
Q Consensus 551 ~~L~~L~l~~n~L~ 564 (733)
.+|+.|++++|-|.
T Consensus 254 ksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhhccchhHhhhh
Confidence 66666666666554
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.11 E-value=0.0012 Score=73.09 Aligned_cols=170 Identities=23% Similarity=0.218 Sum_probs=78.7
Q ss_pred hhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEE
Q 004729 308 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 387 (733)
Q Consensus 308 l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L 387 (733)
+..+.+|+.|++.++.+.. ....+..+++|++|++++|.+..... . ..++.|+.|++
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l--------------------~~l~~L~~L~l 147 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--L--------------------STLTLLKELNL 147 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--h--------------------hhccchhhhee
Confidence 4455566666666665542 11113445555666665555442111 1 22334555555
Q ss_pred cCCchHHH--hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC
Q 004729 388 KRSNMAQA--VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 465 (733)
Q Consensus 388 ~~~~l~~~--~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l 465 (733)
.+|.+..+ +..++.|+.++++++ .+....... ...+.+|+.+.+.++.......+.. +..+..+.+..+...
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~----~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGLDL----LKKLVLLSLLDNKIS 221 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccchHH----HHHHHHhhcccccce
Confidence 55555544 223667777777774 333322101 3566777777777766322222222 122333333332221
Q ss_pred CcCCC-CCCC--ccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 466 SLESV-RLPM--LTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 466 ~~~~~-~l~~--L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
..... .++. |+.+++.+ +.+.... ..+..+..+..|++.++
T Consensus 222 ~~~~l~~~~~~~L~~l~l~~-n~i~~~~-~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 222 KLEGLNELVMLHLRELYLSG-NRISRSP-EGLENLKNLPVLDLSSN 265 (414)
T ss_pred eccCcccchhHHHHHHhccc-Ccccccc-ccccccccccccchhhc
Confidence 11111 1222 66666666 3333221 23444555666666554
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.03 E-value=0.0086 Score=43.08 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=27.4
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCC
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 349 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~ 349 (733)
++|++|++++|.+++ ++..++++++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 478888888888884 4445788888888888888766
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.97 E-value=0.0018 Score=71.23 Aligned_cols=119 Identities=21% Similarity=0.210 Sum_probs=52.3
Q ss_pred cCCCccEEEeeccccchhcc---cCCCCcEEEEcCCchHHHhh---CCCCccEEEEecCCCCChHHHHHHHhcCCCCcEE
Q 004729 358 NHDQLRRLEITKCRVMRVSI---RCPQLEHLSLKRSNMAQAVL---NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESL 431 (733)
Q Consensus 358 ~~~~L~~L~L~~~~~~~i~~---~~~~L~~L~L~~~~l~~~~~---~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L 431 (733)
.+++|+.|++.+|.+..++. ..++|+.|.++++.+..+-. ...+|++|.+++-..+.. ......+.++..|
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l 237 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGL 237 (394)
T ss_pred ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec---chhhhhccccccc
Confidence 34444444444444444333 34445555555554443322 222355555555211111 1123334445555
Q ss_pred eccCCCCCChhHHHHHHHhcccccccccccCCCCCcC-CCCCCCccEEEeCC
Q 004729 432 DMSNCSCVSDESLREIALSCANLRILNSSYCPNISLE-SVRLPMLTVLQLHS 482 (733)
Q Consensus 432 ~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~ 482 (733)
.+.++. +.+ +......+++|+.|+++++...... .....+|+.|++++
T Consensus 238 ~l~~n~-~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 238 ELSNNK-LED--LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred ccCCce-eee--ccchhccccccceeccccccccccccccccCccCEEeccC
Confidence 444433 111 1122234455666666655422211 33556677777766
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.29 E-value=0.023 Score=54.50 Aligned_cols=100 Identities=18% Similarity=0.314 Sum_probs=71.9
Q ss_pred CCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcc----cCCCCcEEEEcCCchHHH-----hhCCCCccEE
Q 004729 335 CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHLSLKRSNMAQA-----VLNCPLLHLL 405 (733)
Q Consensus 335 ~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~----~~~~L~~L~L~~~~l~~~-----~~~~~~L~~L 405 (733)
..+...++|++|.+... ..+..+++|..|.+.+|++.++.. .+|+|+.|.|.+|.+..+ +..||+|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 35566788888865421 234578899999999999886654 578899999999988765 5689999999
Q ss_pred EEecCCCCChHHHH--HHHhcCCCCcEEeccCCC
Q 004729 406 DIASCHKLSDAAIR--LAATSCPQLESLDMSNCS 437 (733)
Q Consensus 406 ~L~~c~~l~~~~l~--~l~~~~~~L~~L~L~~~~ 437 (733)
.+-+. .+....-. .++..+|+|+.|++....
T Consensus 119 tll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 98873 34333211 244567899999988754
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.24 E-value=0.00098 Score=74.57 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=20.3
Q ss_pred hhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCC
Q 004729 308 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 349 (733)
Q Consensus 308 l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~ 349 (733)
+.-++.|+.|+|++|++++. ..+..|++|++|+|+.|.+.
T Consensus 183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 33445555555555555432 24445555555555555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.0039 Score=62.36 Aligned_cols=18 Identities=17% Similarity=0.580 Sum_probs=8.5
Q ss_pred cccCcCCceeeeccCccc
Q 004729 547 VSNCAALHRINITSNSLQ 564 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~ 564 (733)
+..|.+|++|.+..|.|.
T Consensus 59 l~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 344555555544444443
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.21 E-value=0.068 Score=38.42 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=26.3
Q ss_pred CCCcEEEEecCcCCcccccccccCCCccEEEeeccccch
Q 004729 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR 374 (733)
Q Consensus 336 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~ 374 (733)
++|++|++++|.+.+ ++.....+++|+.|++++|.+..
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 578899999888874 44445678888888888876543
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.90 E-value=0.012 Score=65.35 Aligned_cols=85 Identities=19% Similarity=0.331 Sum_probs=57.1
Q ss_pred HhhCCCccEEEEcCCCchhHHHHHH-hhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCC
Q 004729 283 CQRYPNATEVNIYGAPAIHLLVMKA-VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQ 361 (733)
Q Consensus 283 ~~~~~~L~~L~L~~~~~~~~~~~~~-l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 361 (733)
+..+.++..+++.+ ..+... .. +..+++|++|++++|.|+. ...+..++.|+.|++.+|.+...-. ...+..
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i--~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKI--ENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISDISG--LESLKS 163 (414)
T ss_pred cccccceeeeeccc-cchhhc--ccchhhhhcchheecccccccc--ccchhhccchhhheeccCcchhccC--Cccchh
Confidence 34567788888877 333332 22 6789999999999999875 3445567779999999998663211 122666
Q ss_pred ccEEEeeccccch
Q 004729 362 LRRLEITKCRVMR 374 (733)
Q Consensus 362 L~~L~L~~~~~~~ 374 (733)
|+.+++.+|.+..
T Consensus 164 L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 164 LKLLDLSYNRIVD 176 (414)
T ss_pred hhcccCCcchhhh
Confidence 6677776665543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.82 E-value=0.035 Score=55.44 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=36.5
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
.+|+|++|.++.|.+.- .-+|..++..||+|+.|++++ +.+.+ +..+.....+++|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~-----~~~l~vl~e~~P~l~~l~ls~-Nki~~--lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRV-----SGGLEVLAEKAPNLKVLNLSG-NKIKD--LSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccc-----cccceehhhhCCceeEEeecC-Ccccc--ccccchhhhhcchhhhhcccCC
Confidence 34566666666663321 133445555667777777777 56654 2333334556666666666664
No 70
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.58 E-value=0.065 Score=57.25 Aligned_cols=37 Identities=35% Similarity=0.587 Sum_probs=33.8
Q ss_pred cccCCCHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhhc
Q 004729 223 IRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASA 259 (733)
Q Consensus 223 ~~~~LP~ElL~~If~~L~-~~dl~~~~lVck~W~~l~~ 259 (733)
.|++||+|+|..|..+|+ ..|+.+.+.||+.||..+.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 488999999999999995 7799999999999999765
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.02 Score=57.48 Aligned_cols=54 Identities=22% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEEEcCCc
Q 004729 336 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSN 391 (733)
Q Consensus 336 ~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~~ 391 (733)
.+.+.|++.+|.+.+. .+...++.|+.|.|+-|.+..+. ..|.+|++|.|..|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC 74 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc
Confidence 4455566655554432 23344555555555555443322 334444444444443
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.17 E-value=0.073 Score=33.38 Aligned_cols=23 Identities=30% Similarity=0.720 Sum_probs=20.0
Q ss_pred CCCCcEEeecCCCCCChhhhhhh
Q 004729 581 CQCLQEVDLTDCESLTNSVCEVF 603 (733)
Q Consensus 581 ~~~L~~L~Ls~C~~lt~~~~~~~ 603 (733)
|++|+.|+|++|..+||.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 68999999999999999887665
No 73
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.94 E-value=0.014 Score=63.93 Aligned_cols=126 Identities=24% Similarity=0.289 Sum_probs=77.1
Q ss_pred HHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc---CCCC
Q 004729 306 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR---CPQL 382 (733)
Q Consensus 306 ~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~---~~~L 382 (733)
..+..+..|..|+|+.|++. .++..+..|| |+.|-+++|.++....++. ..+.|.+|+.+.|.+..++.. +..|
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~sl 191 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSL 191 (722)
T ss_pred hhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHH
Confidence 33445556667777777766 4444444444 7788888887775555555 677888888888877766643 3445
Q ss_pred cEEEEcCCchHHHhhC--CCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 383 EHLSLKRSNMAQAVLN--CPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 383 ~~L~L~~~~l~~~~~~--~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
+.|.+..|.+..+... .-.|..|+++. +++... +.-+.++..|+.|-|.+++
T Consensus 192 r~l~vrRn~l~~lp~El~~LpLi~lDfSc-Nkis~i--Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 192 RDLNVRRNHLEDLPEELCSLPLIRLDFSC-NKISYL--PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHhhhhhhhCCHHHhCCceeeeeccc-Cceeec--chhhhhhhhheeeeeccCC
Confidence 5555666655543222 23455666653 556543 3345567777777777766
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.94 E-value=0.04 Score=55.09 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=15.3
Q ss_pred cccCCCccEEEeeccccchhc--ccCCCCcEEEEcCC
Q 004729 356 PINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRS 390 (733)
Q Consensus 356 ~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~ 390 (733)
...+..|+.|.+.++.+..+. ..+|+|++|.+++|
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 334455555555554433222 12344444444433
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.42 E-value=0.15 Score=31.99 Aligned_cols=23 Identities=43% Similarity=1.032 Sum_probs=12.7
Q ss_pred CCCCcEEeccCCCCCChhHHHHH
Q 004729 425 CPQLESLDMSNCSCVSDESLREI 447 (733)
Q Consensus 425 ~~~L~~L~L~~~~~l~~~~l~~l 447 (733)
|++|++|+|++|..++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555555555544
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.34 E-value=0.029 Score=50.55 Aligned_cols=85 Identities=11% Similarity=0.038 Sum_probs=53.4
Q ss_pred ccEEEEcCCCch-hHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEe
Q 004729 289 ATEVNIYGAPAI-HLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (733)
Q Consensus 289 L~~L~L~~~~~~-~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 367 (733)
+..++++.|.-. .......+....+|+..+|++|.+.+-..+.-.+++.++.|++.+|.+.+...+ ...++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence 455666666532 122334455666777788888877743333334567888888888877755444 556777777777
Q ss_pred eccccch
Q 004729 368 TKCRVMR 374 (733)
Q Consensus 368 ~~~~~~~ 374 (733)
..|++..
T Consensus 108 ~~N~l~~ 114 (177)
T KOG4579|consen 108 RFNPLNA 114 (177)
T ss_pred ccCcccc
Confidence 7776543
No 77
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=91.25 E-value=0.013 Score=64.20 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=87.3
Q ss_pred hcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEc
Q 004729 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLK 388 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~ 388 (733)
..|-.|+.+.|+.|.+. ..+..+.++..|++|+|+.|++......+. .-- |+.|-++
T Consensus 95 ~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lp--------------------Lkvli~s 151 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLP--------------------LKVLIVS 151 (722)
T ss_pred HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhh--cCc--------------------ceeEEEe
Confidence 33444556666666554 445556666677777777666543222111 112 4444444
Q ss_pred CCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC--
Q 004729 389 RSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 463 (733)
Q Consensus 389 ~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~-- 463 (733)
+|.+..+ +...++|..|+.+.|. + ..++.-+..+.+|+.|++..+. +.+ ..+++. +-.|..|+++.+.
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~ne-i--~slpsql~~l~slr~l~vrRn~-l~~-lp~El~--~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNE-I--QSLPSQLGYLTSLRDLNVRRNH-LED-LPEELC--SLPLIRLDFSCNKIS 224 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhh-h--hhchHHhhhHHHHHHHHHhhhh-hhh-CCHHHh--CCceeeeecccCcee
Confidence 4443322 3345667777777753 2 2233444556677777777665 211 122222 3456777777544
Q ss_pred CCCcCCCCCCCccEEEeCCCCCCchHHHHHh--hCCCCcCEEEEecC
Q 004729 464 NISLESVRLPMLTVLQLHSCEGITSASMAAI--SHSYMLEVLELDNC 508 (733)
Q Consensus 464 ~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l--~~~~~L~~L~L~~~ 508 (733)
.++....++..|++|.|.+ +-+........ +..--.++|++.-|
T Consensus 225 ~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 3445555777777777776 43443332221 12233455666655
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.56 E-value=0.13 Score=46.36 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=67.6
Q ss_pred EeeCCCCCC-HHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEec
Q 004729 267 LNFENRKIS-VEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVND 345 (733)
Q Consensus 267 l~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~ 345 (733)
+++..+.+- -......+.+...++.+++++ +.+..........++.++.|+|.+|.+.+ .|..+..++.|+.|++..
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRF 109 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccccc
Confidence 344444332 223344455666788888887 55555444444567789999999999984 566689999999999999
Q ss_pred CcCCcccccccccCCCccEEEeeccc
Q 004729 346 ATLGNGVQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 346 ~~l~~~~~~~~~~~~~L~~L~L~~~~ 371 (733)
|.+......+. .+.+|-.|+..++.
T Consensus 110 N~l~~~p~vi~-~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 110 NPLNAEPRVIA-PLIKLDMLDSPENA 134 (177)
T ss_pred CccccchHHHH-HHHhHHHhcCCCCc
Confidence 98875544433 25566666655543
No 79
>PF13013 F-box-like_2: F-box-like domain
Probab=86.96 E-value=0.8 Score=39.96 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=26.4
Q ss_pred ccCCCHHHHHHHHhcCChhhHHHHHHHHH
Q 004729 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCR 252 (733)
Q Consensus 224 ~~~LP~ElL~~If~~L~~~dl~~~~lVck 252 (733)
+.+||+||+..||.|....++..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999999999988888887
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.06 E-value=2.5 Score=37.76 Aligned_cols=59 Identities=22% Similarity=0.492 Sum_probs=22.5
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEee
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLD 618 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~ 618 (733)
+.+|.+|+.+.+.. .++.+.-. .+..|++|+.+.+.+ .++...-..| ..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~-------~F~~~~~l~~i~~~~--~~~~i~~~~F---~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGEN-------AFSNCTSLKSINFPN--NLTSIGDNAF---SNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TT-------TTTT-TT-SEEEESS--TTSCE-TTTT---TT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChh-------hcccccccccccccc--cccccceeee---eccccccccccc
Confidence 56666677666653 34433211 122455666666654 2333222223 345556666663
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.36 E-value=0.83 Score=25.42 Aligned_cols=16 Identities=50% Similarity=0.584 Sum_probs=9.9
Q ss_pred CCccEEeccCccccccc
Q 004729 715 PLLTSLDASFCRCVASL 731 (733)
Q Consensus 715 p~L~~L~l~~C~~L~~l 731 (733)
++|+.|++++|. |+.|
T Consensus 1 ~~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCCC-CCCC
Confidence 468888888888 7655
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=78.01 E-value=0.88 Score=51.78 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=40.0
Q ss_pred ccccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCee
Q 004729 220 DLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265 (733)
Q Consensus 220 ~~~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~ 265 (733)
..+.+..||.|+...||.||+.++++.+++||+.|+.++.+...|.
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 4577889999999999999999999999999999999987644433
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.95 E-value=2.9 Score=37.33 Aligned_cols=75 Identities=20% Similarity=0.392 Sum_probs=26.7
Q ss_pred ccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccc----hhcccCCCCcEEEEcCC--chH-HHhhCCCCccE
Q 004729 332 LADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM----RVSIRCPQLEHLSLKRS--NMA-QAVLNCPLLHL 404 (733)
Q Consensus 332 L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~----~i~~~~~~L~~L~L~~~--~l~-~~~~~~~~L~~ 404 (733)
+..+++|+.+.+..+ +...-......++.|+.+.+.. ... .....+++|+.+.+..+ .+. ..+.++ +|+.
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSNITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT-BEEHTTTTTT--T--E
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCccccEEchhhhcCC-CceE
Confidence 334445555555442 2221222233444455555543 111 11223555666655432 111 224455 7777
Q ss_pred EEEec
Q 004729 405 LDIAS 409 (733)
Q Consensus 405 L~L~~ 409 (733)
+.+..
T Consensus 108 i~~~~ 112 (129)
T PF13306_consen 108 INIPS 112 (129)
T ss_dssp EE-TT
T ss_pred EEECC
Confidence 76653
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=75.80 E-value=1.9 Score=25.69 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=6.4
Q ss_pred ccEEeccccccccccc
Q 004729 633 LVSLSLVGCRAITALE 648 (733)
Q Consensus 633 L~~L~L~~c~~L~~l~ 648 (733)
|++|+|++| .|+.++
T Consensus 2 L~~Ldls~n-~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIP 16 (22)
T ss_dssp ESEEEETSS-EESEEG
T ss_pred ccEEECCCC-cCEeCC
Confidence 444444444 344333
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.53 E-value=1.7 Score=26.35 Aligned_cols=22 Identities=41% Similarity=0.380 Sum_probs=13.9
Q ss_pred CCCCCEEEecCccCChHHHHhc
Q 004729 311 LRNLEALTLGRGQLGDAFFHAL 332 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L 332 (733)
+++|++|+|++|.+++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3677888888888877666654
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.59 E-value=2.5 Score=25.66 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=11.8
Q ss_pred CCCCcEEeccCCCCCChhHHHHH
Q 004729 425 CPQLESLDMSNCSCVSDESLREI 447 (733)
Q Consensus 425 ~~~L~~L~L~~~~~l~~~~l~~l 447 (733)
+++|+.|+|++|. +++.++..+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHh
Confidence 3566666666666 666665554
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=71.59 E-value=0.77 Score=51.50 Aligned_cols=147 Identities=20% Similarity=0.318 Sum_probs=69.9
Q ss_pred HHHhhcCCCCCEEEecCccCChHHHHhccC----C-CCCcEEEEecCcCCcc----cccccccCCCccEEEeeccccchh
Q 004729 305 MKAVSLLRNLEALTLGRGQLGDAFFHALAD----C-SMLKSLNVNDATLGNG----VQEIPINHDQLRRLEITKCRVMRV 375 (733)
Q Consensus 305 ~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~----~-~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~~~~~~i 375 (733)
...+...+.|+.|++++|.+.+.....+.. - +.|++|.+..|.++.. +.........|+.+++..|.+...
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~ 187 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL 187 (478)
T ss_pred HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh
Confidence 344456667777777777666544444332 1 4455566655554421 112222245555555555543200
Q ss_pred c--ccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHH---HHHHhcCCC-CcEEeccCCCCCChhHHHHHHH
Q 004729 376 S--IRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQ-LESLDMSNCSCVSDESLREIAL 449 (733)
Q Consensus 376 ~--~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l---~~l~~~~~~-L~~L~L~~~~~l~~~~l~~l~~ 449 (733)
. ..++.++. .+....++++|++.+|. ++.... ...+...+. +.+|++..+. +.+.++..+..
T Consensus 188 g~~~l~~~l~~----------~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~ 255 (478)
T KOG4308|consen 188 GLLVLSQALES----------AASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLP 255 (478)
T ss_pred hhHHHhhhhhh----------hhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHH
Confidence 0 00000000 11235567777777763 333332 233333444 5567776665 56665665554
Q ss_pred hcc----cccccccccCC
Q 004729 450 SCA----NLRILNSSYCP 463 (733)
Q Consensus 450 ~~~----~L~~L~L~~~~ 463 (733)
.++ .++++++..|+
T Consensus 256 ~l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 256 CLSVLSETLRVLDLSRNS 273 (478)
T ss_pred HhcccchhhhhhhhhcCC
Confidence 433 33555555554
No 88
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=67.65 E-value=4.9 Score=34.33 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=23.3
Q ss_pred ccccCCCHHHHHHHHhcCChhhHHHH
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLCRA 247 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~~~ 247 (733)
..|..||.|+...|+++|+..|+...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999999998643
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.77 E-value=5.4 Score=44.43 Aligned_cols=72 Identities=25% Similarity=0.248 Sum_probs=46.3
Q ss_pred ccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
.+-|.+..+.+++|+|..+ +.+..+....|+|+.|+|++.........+... -+...|++|.+.|++-.+.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~L-----d~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHL-----DALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhch-----hhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccch
Confidence 4456677777888887765 567778888899999999984111111111111 13456888888887765555
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=52.27 E-value=24 Score=22.34 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=15.3
Q ss_pred CCCcEEeccCCCCCChhHHHHHHH
Q 004729 426 PQLESLDMSNCSCVSDESLREIAL 449 (733)
Q Consensus 426 ~~L~~L~L~~~~~l~~~~l~~l~~ 449 (733)
++|++|+|+++. +.+.+...++.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHH
Confidence 467777777766 67766666653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.51 E-value=11 Score=42.04 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=30.1
Q ss_pred cCCCCCEEEecCccCCh-HHHHhc-cCCCCCcEEEEecC--cCCcccccccccCCCccEEEeecccc
Q 004729 310 LLRNLEALTLGRGQLGD-AFFHAL-ADCSMLKSLNVNDA--TLGNGVQEIPINHDQLRRLEITKCRV 372 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~-~~~~~L-~~~~~L~~L~L~~~--~l~~~~~~~~~~~~~L~~L~L~~~~~ 372 (733)
..+.+..+.|++|++.. ..+..+ ...|+|+.|+|++| .+.....--......|++|.+.+|++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 45666666666665432 122222 23567777777666 22221111122334455555555543
No 92
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=43.40 E-value=5.8 Score=44.60 Aligned_cols=172 Identities=22% Similarity=0.313 Sum_probs=89.7
Q ss_pred HHHHHHHhhCCCccEEEEcCCCchhHHHHHHhh----cC-CCCCEEEecCccCCh----HHHHhccCCCCCcEEEEecCc
Q 004729 277 EQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVS----LL-RNLEALTLGRGQLGD----AFFHALADCSMLKSLNVNDAT 347 (733)
Q Consensus 277 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~----~l-~~L~~L~Ls~~~i~~----~~~~~L~~~~~L~~L~L~~~~ 347 (733)
..+...+.-.+.+..|++.+... .+.....+. .. ..++.|.+..|.++. .....+.....++.+++..|.
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 34444455556777788877442 232222222 22 446667777776654 344555567888888888877
Q ss_pred CCcc-c---cccc----ccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCC-ccEEEEecCCCCChHHH
Q 004729 348 LGNG-V---QEIP----INHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPL-LHLLDIASCHKLSDAAI 418 (733)
Q Consensus 348 l~~~-~---~~~~----~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~-L~~L~L~~c~~l~~~~l 418 (733)
+... . .... ....++++|.+.+|.+.... | ..+...+...++ +..|++.. +.+.+.++
T Consensus 184 l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~--c----------~~l~~~l~~~~~~~~el~l~~-n~l~d~g~ 250 (478)
T KOG4308|consen 184 LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS--C----------ALLDEVLASGESLLRELDLAS-NKLGDVGV 250 (478)
T ss_pred cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH--H----------HHHHHHHhccchhhHHHHHHh-cCcchHHH
Confidence 5321 1 1111 13445555665555432100 0 011223444444 55667666 45666554
Q ss_pred HHHHhcC----CCCcEEeccCCCCCChhHHHHH---HHhcccccccccccCC
Q 004729 419 RLAATSC----PQLESLDMSNCSCVSDESLREI---ALSCANLRILNSSYCP 463 (733)
Q Consensus 419 ~~l~~~~----~~L~~L~L~~~~~l~~~~l~~l---~~~~~~L~~L~L~~~~ 463 (733)
..+...+ +.++.+++..|. +++.+...+ ...|++++.+.+.+++
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 4443333 455778887777 555443333 3355666776666544
No 93
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=32.43 E-value=19 Score=36.44 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=37.6
Q ss_pred cccccCCCHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhhcCCCCeeEE
Q 004729 221 LEIRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASAHEDFWRCL 267 (733)
Q Consensus 221 ~~~~~~LP~ElL~~If~~L~-~~dl~~~~lVck~W~~l~~~~~lw~~l 267 (733)
...+.+||.|++..|+..++ .+|+..++.|-..-+.+.....+|+.+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkL 246 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKL 246 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34578999999999999997 789999988877777776666677754
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=27.76 E-value=48 Score=20.23 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=8.2
Q ss_pred CCCCEEEecCccCC
Q 004729 312 RNLEALTLGRGQLG 325 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~ 325 (733)
++|+.|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666554
No 95
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=27.76 E-value=48 Score=20.23 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=8.2
Q ss_pred CCCCEEEecCccCC
Q 004729 312 RNLEALTLGRGQLG 325 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~ 325 (733)
++|+.|+|++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666554
No 96
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=26.24 E-value=59 Score=20.28 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=10.7
Q ss_pred ccEEEEecCCCCChHHHHHHHhcCC
Q 004729 402 LHLLDIASCHKLSDAAIRLAATSCP 426 (733)
Q Consensus 402 L~~L~L~~c~~l~~~~l~~l~~~~~ 426 (733)
|++|.|.....-.+..+..++..||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4455554432222334445544443
No 97
>PF08833 Axin_b-cat_bind: Axin beta-catenin binding domain; InterPro: IPR014936 Proteins in this entry are found on the scaffolding protein Axin which is a component of the beta-catenin destruction complex. It competes with the tumour suppressor adenomatous polyposis coli protein (APC) for binding to beta-catenin []. ; PDB: 1QZ7_B.
Probab=25.57 E-value=31 Score=24.68 Aligned_cols=14 Identities=50% Similarity=0.548 Sum_probs=10.6
Q ss_pred chhhhhhhhhcccC
Q 004729 73 MPQAILDDVYSTMS 86 (733)
Q Consensus 73 ~~~~~~~~~~~~~~ 86 (733)
-||+||||-+|..-
T Consensus 3 d~qsILD~HvsRV~ 16 (45)
T PF08833_consen 3 DPQSILDDHVSRVW 16 (45)
T ss_dssp -TTHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHh
Confidence 48999999888763
No 98
>PRK09718 hypothetical protein; Validated
Probab=24.19 E-value=1.2e+02 Score=33.81 Aligned_cols=92 Identities=12% Similarity=0.236 Sum_probs=42.9
Q ss_pred CCccEEEeecCCCCccccccCCCccEEeccccccccccccccccccEEecccccccccccccccCC---cEEEecCCCCc
Q 004729 610 PMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVAL---QSLNLGICPKL 686 (733)
Q Consensus 610 ~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~c~~L~~~~~~~~~L---~~L~L~~c~~L 686 (733)
..++...+.+|. +....+.-..|+...+.+|. +......--+|+...+.+|. +....+....| +.....+|. |
T Consensus 145 A~L~rvsFinCK-LsGAdFSgA~Lk~V~FsdCn-L~yAnFsgAnLskA~F~gCD-LseAdFSEcdLS~aKka~F~~cD-L 220 (512)
T PRK09718 145 RRLHNVIFIKAS-GEYVDFSKNILDTVDFSQSQ-LTHSNFRECQIRNSNFDNCY-LYASHFTRAEFLSAKEISFIKSN-L 220 (512)
T ss_pred ceecceEEEecc-ccCcccccCccCCcEEeeeE-ecccCCCCCcCCCCEEeCcc-CCcCCccCCccCCCCCCEEeCCC-C
Confidence 356666666663 44444444455556666653 33332233455555666654 33333332232 333444442 4
Q ss_pred cccccCcccccEEEecCCC
Q 004729 687 STLGIEALHMVVLELKGCG 705 (733)
Q Consensus 687 ~~l~~~~~~L~~L~l~~c~ 705 (733)
.......-.|+..+++.|.
T Consensus 221 t~AdF~qT~LkgVDFSdC~ 239 (512)
T PRK09718 221 TAVMFDHVRISTGNFKDCI 239 (512)
T ss_pred CCCCcCCCcCCCccccccc
Confidence 4433333344444444443
No 99
>PLN02364 L-ascorbate peroxidase 1
Probab=20.63 E-value=36 Score=34.63 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=33.9
Q ss_pred hhhhhhcccccccCCCccccccccchhhhhhhhhcccCCCCCCCCCCC
Q 004729 49 DVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSGENTNDDASV 96 (733)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (733)
.+.+.+|||.+.+++..|.||---++..-+-+.|....|-++.|-..+
T Consensus 112 ~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL 159 (250)
T PLN02364 112 DIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVAL 159 (250)
T ss_pred eeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheee
Confidence 456789999999999999999766666666666665336655554433
No 100
>PHA03100 ankyrin repeat protein; Provisional
Probab=20.17 E-value=80 Score=35.43 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=24.3
Q ss_pred ccccCCCHHHHHHHHhcCChhhHHHHHH
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLCRAAI 249 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~~~~l 249 (733)
..|..||.||...|++||+..|+..+..
T Consensus 446 ~~w~~lP~Eik~~Il~~l~~~dl~~~~~ 473 (480)
T PHA03100 446 TYWNILPIEIKYKILEYLSNRDLKSLIE 473 (480)
T ss_pred CchhhCcHHHHHHHHHhCCHHHHHHHHh
Confidence 4789999999999999999999876543
Done!