Query 004729
Match_columns 733
No_of_seqs 429 out of 3468
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 03:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 8.3E-33 2.8E-37 319.3 25.0 437 222-685 4-518 (594)
2 3ogk_B Coronatine-insensitive 100.0 5.1E-31 1.7E-35 304.3 22.6 454 225-724 14-547 (592)
3 2ast_B S-phase kinase-associat 99.9 7.7E-27 2.6E-31 249.5 15.7 269 222-508 7-282 (336)
4 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-24 4.2E-29 248.5 23.6 421 287-726 26-508 (549)
5 3t6q_A CD180 antigen; protein- 99.9 1.8E-24 6.1E-29 250.3 22.6 417 284-726 54-558 (606)
6 3rgz_A Protein brassinosteroid 99.9 5.4E-25 1.8E-29 261.4 16.4 368 283-663 122-549 (768)
7 3rgz_A Protein brassinosteroid 99.9 3.8E-24 1.3E-28 254.1 21.4 414 284-726 197-715 (768)
8 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-23 7.5E-28 241.1 24.7 418 287-726 32-556 (606)
9 3t6q_A CD180 antigen; protein- 99.9 2E-23 6.9E-28 241.4 23.1 417 287-725 33-533 (606)
10 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-23 1.3E-27 242.6 25.3 424 283-725 69-594 (680)
11 1ziw_A TOLL-like receptor 3; i 99.9 5.4E-23 1.8E-27 241.2 26.1 241 283-528 45-305 (680)
12 3vq2_A TLR4, TOLL-like recepto 99.9 7.5E-23 2.6E-27 236.6 25.3 402 285-708 78-559 (606)
13 2z81_A CD282 antigen, TOLL-lik 99.9 8.1E-23 2.8E-27 233.4 24.2 398 312-726 26-484 (549)
14 3ogk_B Coronatine-insensitive 99.9 5.6E-23 1.9E-27 236.9 22.5 251 378-661 268-547 (592)
15 4eco_A Uncharacterized protein 99.9 5.8E-24 2E-28 247.0 11.3 360 352-729 198-633 (636)
16 2z63_A TOLL-like receptor 4, v 99.9 6.7E-23 2.3E-27 235.0 18.9 407 287-726 28-529 (570)
17 4ecn_A Leucine-rich repeat pro 99.9 2.5E-23 8.5E-28 246.7 15.0 422 287-730 323-874 (876)
18 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-22 3.9E-27 244.0 19.2 422 285-725 46-557 (844)
19 3j0a_A TOLL-like receptor 5; m 99.9 5.2E-22 1.8E-26 238.2 21.5 409 286-730 23-518 (844)
20 2z63_A TOLL-like receptor 4, v 99.9 4.6E-22 1.6E-26 228.1 17.0 414 262-706 28-530 (570)
21 2p1m_B Transport inhibitor res 99.9 7.9E-22 2.7E-26 227.3 18.7 40 422-462 285-324 (594)
22 2z7x_B TOLL-like receptor 1, v 99.9 3E-21 1E-25 219.0 22.3 406 287-726 21-479 (520)
23 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-20 6.4E-25 212.4 28.4 397 262-684 21-479 (520)
24 1jl5_A Outer protein YOPM; leu 99.9 5.3E-22 1.8E-26 220.8 15.3 141 287-437 11-164 (454)
25 4ecn_A Leucine-rich repeat pro 99.9 6.2E-21 2.1E-25 226.2 22.3 392 312-726 323-838 (876)
26 4eco_A Uncharacterized protein 99.9 5.6E-21 1.9E-25 221.9 18.2 331 376-726 202-598 (636)
27 1o6v_A Internalin A; bacterial 99.8 7E-20 2.4E-24 204.7 24.7 330 287-662 46-385 (466)
28 1z7x_W Ribonuclease inhibitor; 99.8 4.5E-20 1.5E-24 205.8 21.9 243 263-509 4-295 (461)
29 3v47_A TOLL-like receptor 5B a 99.8 2.1E-20 7.2E-25 208.1 17.1 196 312-510 30-251 (455)
30 4fmz_A Internalin; leucine ric 99.8 1.4E-19 4.9E-24 194.0 22.3 278 285-621 42-322 (347)
31 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-20 6E-25 208.7 15.6 275 310-641 40-317 (457)
32 1z7x_W Ribonuclease inhibitor; 99.8 6.8E-20 2.3E-24 204.3 20.3 322 287-620 3-380 (461)
33 3bz5_A Internalin-J, INLJ; leu 99.8 2.3E-20 8E-25 207.7 15.8 285 332-690 38-324 (457)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.8E-20 1.6E-24 211.1 16.3 209 497-726 275-508 (562)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.8E-19 2.3E-23 201.5 25.8 391 265-684 34-508 (562)
36 1o6v_A Internalin A; bacterial 99.8 1.4E-18 4.7E-23 194.2 25.4 334 265-647 49-390 (466)
37 1jl5_A Outer protein YOPM; leu 99.8 4.4E-20 1.5E-24 205.3 11.9 293 313-661 72-366 (454)
38 3v47_A TOLL-like receptor 5B a 99.8 1.9E-19 6.5E-24 200.4 15.1 321 287-642 30-406 (455)
39 4fmz_A Internalin; leucine ric 99.8 2E-18 6.9E-23 185.0 22.2 293 264-621 46-344 (347)
40 3o6n_A APL1; leucine-rich repe 99.8 1.1E-18 3.9E-23 190.2 17.9 207 286-508 44-258 (390)
41 4g8a_A TOLL-like receptor 4; l 99.8 7.3E-18 2.5E-22 195.3 25.2 140 580-725 418-577 (635)
42 2id5_A Lingo-1, leucine rich r 99.8 6.9E-19 2.4E-23 197.2 13.1 216 287-508 32-258 (477)
43 3o6n_A APL1; leucine-rich repe 99.8 4E-18 1.4E-22 185.9 17.7 297 310-661 43-348 (390)
44 2id5_A Lingo-1, leucine rich r 99.8 2.5E-18 8.6E-23 192.7 15.9 285 311-620 31-330 (477)
45 3oja_B Anopheles plasmodium-re 99.8 6.4E-18 2.2E-22 194.8 17.8 295 286-620 50-355 (597)
46 4g8a_A TOLL-like receptor 4; l 99.8 2.6E-17 8.8E-22 190.7 22.6 122 288-410 53-183 (635)
47 3oja_B Anopheles plasmodium-re 99.7 1.5E-17 5.2E-22 191.7 18.2 294 310-662 49-355 (597)
48 2ast_B S-phase kinase-associat 99.7 3.2E-16 1.1E-20 166.9 13.3 247 313-601 48-311 (336)
49 2ft3_A Biglycan; proteoglycan, 99.6 5.3E-16 1.8E-20 165.2 8.6 173 312-509 54-228 (332)
50 1xku_A Decorin; proteoglycan, 99.6 4.1E-15 1.4E-19 158.1 15.2 175 312-509 52-227 (330)
51 3o53_A Protein LRIM1, AGAP0063 99.6 1.4E-16 4.6E-21 168.6 1.5 158 299-462 21-179 (317)
52 2ft3_A Biglycan; proteoglycan, 99.6 2.7E-15 9.2E-20 159.7 10.4 167 313-509 34-204 (332)
53 3g06_A SSPH2 (leucine-rich rep 99.6 1.7E-14 5.9E-19 165.5 15.3 190 312-527 40-229 (622)
54 3g06_A SSPH2 (leucine-rich rep 99.6 2E-13 6.8E-18 156.7 23.5 253 426-726 40-295 (622)
55 2z80_A TOLL-like receptor 2, v 99.5 9E-15 3.1E-19 157.0 10.4 258 312-621 52-312 (353)
56 1xku_A Decorin; proteoglycan, 99.5 4.7E-14 1.6E-18 149.9 11.8 264 287-592 52-329 (330)
57 4fcg_A Uncharacterized protein 99.5 9.3E-15 3.2E-19 155.2 6.3 214 285-517 79-296 (328)
58 2ca6_A RAN GTPase-activating p 99.5 1.4E-13 4.9E-18 149.5 15.6 40 548-591 300-339 (386)
59 1ogq_A PGIP-2, polygalacturona 99.5 2E-15 6.9E-20 159.3 0.7 122 287-409 50-183 (313)
60 2ca6_A RAN GTPase-activating p 99.5 2.3E-13 8E-18 147.8 15.3 180 281-463 26-255 (386)
61 2z80_A TOLL-like receptor 2, v 99.5 1.2E-13 4.2E-18 148.1 11.7 222 287-515 52-293 (353)
62 1ogq_A PGIP-2, polygalacturona 99.5 1.9E-14 6.4E-19 151.9 4.9 245 312-625 50-306 (313)
63 4fcg_A Uncharacterized protein 99.5 2.1E-14 7.1E-19 152.5 5.2 219 262-508 81-311 (328)
64 3o53_A Protein LRIM1, AGAP0063 99.5 8.4E-15 2.9E-19 154.8 2.1 184 314-528 12-200 (317)
65 3zyi_A Leucine-rich repeat-con 99.5 8.3E-14 2.9E-18 154.7 9.5 217 312-564 75-303 (452)
66 3zyj_A Leucine-rich repeat-con 99.5 8E-14 2.8E-18 154.3 9.1 217 312-564 64-292 (440)
67 3zyi_A Leucine-rich repeat-con 99.4 7.9E-14 2.7E-18 154.9 7.1 215 287-509 75-301 (452)
68 3zyj_A Leucine-rich repeat-con 99.4 8.9E-14 3.1E-18 153.9 7.1 215 287-509 64-290 (440)
69 3oja_A Leucine-rich immune mol 99.4 7.5E-14 2.5E-18 156.5 6.1 191 310-508 32-224 (487)
70 3goz_A Leucine-rich repeat-con 99.4 2.5E-13 8.7E-18 146.2 9.5 131 303-447 13-158 (362)
71 2z66_A Variable lymphocyte rec 99.4 1.6E-13 5.4E-18 144.1 5.5 220 312-565 28-262 (306)
72 1ozn_A Reticulon 4 receptor; N 99.4 4.5E-13 1.5E-17 139.1 8.4 194 311-509 31-236 (285)
73 2z66_A Variable lymphocyte rec 99.4 7E-14 2.4E-18 146.8 2.0 172 287-463 28-210 (306)
74 3goz_A Leucine-rich repeat-con 99.4 2.8E-12 9.4E-17 138.1 13.0 229 278-509 13-295 (362)
75 1wwl_A Monocyte differentiatio 99.3 7.8E-13 2.7E-17 139.3 7.9 136 310-463 93-239 (312)
76 2z62_A TOLL-like receptor 4, v 99.3 6.1E-13 2.1E-17 137.4 6.4 194 312-509 28-235 (276)
77 4glp_A Monocyte differentiatio 99.3 1.7E-11 5.9E-16 128.8 16.2 220 428-661 66-303 (310)
78 1wwl_A Monocyte differentiatio 99.3 2.2E-12 7.5E-17 135.8 8.4 204 285-509 93-307 (312)
79 1ozn_A Reticulon 4 receptor; N 99.3 3.1E-13 1.1E-17 140.3 1.8 194 286-484 31-236 (285)
80 3oja_A Leucine-rich immune mol 99.3 2.6E-13 8.8E-18 152.1 0.7 216 281-511 28-250 (487)
81 4glp_A Monocyte differentiatio 99.3 4.4E-12 1.5E-16 133.4 9.7 196 311-528 90-303 (310)
82 1h6u_A Internalin H; cell adhe 99.3 1.1E-11 3.8E-16 130.2 10.9 187 287-509 41-228 (308)
83 2xwt_C Thyrotropin receptor; s 99.3 3.7E-11 1.3E-15 121.2 13.9 168 473-661 31-214 (239)
84 2xwt_C Thyrotropin receptor; s 99.2 9.8E-12 3.3E-16 125.4 6.2 193 313-531 32-238 (239)
85 4ay9_X Follicle-stimulating ho 99.2 2.4E-10 8.2E-15 122.2 16.4 199 473-690 30-240 (350)
86 1h6u_A Internalin H; cell adhe 99.2 5.4E-11 1.8E-15 124.9 9.5 182 264-483 43-227 (308)
87 2o6q_A Variable lymphocyte rec 99.1 5.1E-11 1.7E-15 122.5 7.4 99 337-437 38-144 (270)
88 2o6q_A Variable lymphocyte rec 99.1 7.9E-10 2.7E-14 113.6 15.1 101 548-661 106-214 (270)
89 2z62_A TOLL-like receptor 4, v 99.1 5.9E-11 2E-15 122.4 4.8 191 287-483 28-234 (276)
90 1p9a_G Platelet glycoprotein I 99.1 9E-10 3.1E-14 114.5 13.8 165 473-661 31-204 (290)
91 4ay9_X Follicle-stimulating ho 99.0 3.5E-10 1.2E-14 121.0 9.7 217 400-661 30-255 (350)
92 1p9a_G Platelet glycoprotein I 99.0 1.5E-10 5.2E-15 120.3 6.4 97 310-409 8-109 (290)
93 3rfs_A Internalin B, repeat mo 99.0 9.4E-10 3.2E-14 113.2 12.2 182 452-661 41-231 (272)
94 3rfs_A Internalin B, repeat mo 99.0 5.7E-10 2E-14 114.8 10.4 191 397-640 38-231 (272)
95 1h6t_A Internalin B; cell adhe 99.0 6.2E-10 2.1E-14 115.8 8.6 57 450-509 154-211 (291)
96 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.6E-10 8.8E-15 85.5 2.9 47 222-268 7-53 (53)
97 1h6t_A Internalin B; cell adhe 98.9 7.8E-10 2.7E-14 115.0 6.9 165 286-483 45-210 (291)
98 4ezg_A Putative uncharacterize 98.9 7E-09 2.4E-13 101.0 12.5 145 471-661 42-190 (197)
99 1m9s_A Internalin B; cell inva 98.9 1.4E-09 4.9E-14 124.4 8.0 117 286-409 42-162 (605)
100 1m9s_A Internalin B; cell inva 98.9 1.8E-09 6.2E-14 123.6 7.9 163 309-483 40-207 (605)
101 3m19_A Variable lymphocyte rec 98.9 1.1E-09 3.7E-14 111.2 5.4 147 288-437 36-190 (251)
102 4ezg_A Putative uncharacterize 98.9 4.1E-09 1.4E-13 102.7 8.5 150 286-463 43-192 (197)
103 3m19_A Variable lymphocyte rec 98.8 2.5E-08 8.5E-13 101.1 13.4 146 473-640 35-188 (251)
104 3sb4_A Hypothetical leucine ri 98.8 8.6E-09 2.9E-13 109.1 9.6 98 286-392 24-136 (329)
105 3cvr_A Invasion plasmid antige 98.8 3.8E-08 1.3E-12 111.5 14.9 173 498-706 59-242 (571)
106 3cvr_A Invasion plasmid antige 98.7 9.5E-08 3.3E-12 108.2 15.7 171 452-662 59-240 (571)
107 2je0_A Acidic leucine-rich nuc 98.7 2E-08 6.9E-13 92.9 7.8 130 311-460 16-148 (149)
108 1xeu_A Internalin C; cellular 98.7 1.2E-08 4E-13 104.4 6.3 121 309-437 38-161 (263)
109 3e4g_A ATP synthase subunit S, 98.7 4.3E-08 1.5E-12 92.5 8.3 94 401-514 62-155 (176)
110 2o6s_A Variable lymphocyte rec 98.7 1.8E-08 6E-13 99.0 5.9 124 312-437 28-159 (208)
111 3un9_A NLR family member X1; l 98.7 7.4E-08 2.5E-12 103.6 11.1 51 396-448 207-260 (372)
112 3sb4_A Hypothetical leucine ri 98.7 1.9E-08 6.4E-13 106.4 6.3 85 574-667 218-311 (329)
113 1xeu_A Internalin C; cellular 98.6 2.2E-08 7.6E-13 102.3 6.4 142 284-437 38-183 (263)
114 3e4g_A ATP synthase subunit S, 98.6 3.1E-08 1.1E-12 93.5 6.6 103 313-455 62-170 (176)
115 2ell_A Acidic leucine-rich nuc 98.6 1.7E-08 5.8E-13 95.5 4.4 123 312-437 24-158 (168)
116 3un9_A NLR family member X1; l 98.6 7.8E-08 2.7E-12 103.4 9.9 174 287-497 72-262 (372)
117 2o6s_A Variable lymphocyte rec 98.6 9.7E-08 3.3E-12 93.6 9.8 37 472-509 27-63 (208)
118 2je0_A Acidic leucine-rich nuc 98.6 1.8E-08 6.3E-13 93.1 4.0 130 286-434 16-148 (149)
119 3e6j_A Variable lymphocyte rec 98.6 4.3E-08 1.5E-12 97.9 6.7 124 312-437 40-170 (229)
120 2ell_A Acidic leucine-rich nuc 98.6 3E-08 1E-12 93.7 5.2 128 334-463 22-158 (168)
121 2xot_A Amphoterin-induced prot 98.6 4.1E-08 1.4E-12 105.3 6.3 124 312-437 39-174 (361)
122 2v9t_B SLIT homolog 2 protein 98.6 3.6E-08 1.2E-12 97.8 5.3 124 312-437 32-163 (220)
123 2v9t_B SLIT homolog 2 protein 98.6 4.5E-08 1.5E-12 97.1 5.8 121 288-409 33-161 (220)
124 4fs7_A Uncharacterized protein 98.6 9.1E-08 3.1E-12 103.9 8.5 73 580-661 295-375 (394)
125 3e6j_A Variable lymphocyte rec 98.5 5E-08 1.7E-12 97.4 5.6 123 287-410 40-169 (229)
126 1dce_A Protein (RAB geranylger 98.5 1.1E-10 3.8E-15 132.7 -15.7 37 309-346 346-382 (567)
127 2xot_A Amphoterin-induced prot 98.5 5.6E-08 1.9E-12 104.2 4.2 148 287-437 39-200 (361)
128 2v70_A SLIT-2, SLIT homolog 2 98.4 1.4E-07 4.7E-12 93.6 5.4 123 313-437 33-164 (220)
129 1a9n_A U2A', U2A'; complex (nu 98.4 1.8E-07 6.1E-12 89.2 5.5 122 311-437 18-151 (176)
130 1ds9_A Outer arm dynein; leuci 98.4 1.4E-08 4.8E-13 99.0 -2.9 109 307-437 43-151 (198)
131 2ra8_A Uncharacterized protein 98.4 5.8E-07 2E-11 95.9 9.3 63 444-507 164-228 (362)
132 1a9n_A U2A', U2A'; complex (nu 98.3 3.2E-07 1.1E-11 87.4 5.0 95 313-409 43-149 (176)
133 2v70_A SLIT-2, SLIT homolog 2 98.3 2E-07 6.9E-12 92.4 2.8 123 287-410 32-163 (220)
134 2ra8_A Uncharacterized protein 98.3 3.9E-06 1.3E-10 89.5 12.7 88 398-508 250-340 (362)
135 4fs7_A Uncharacterized protein 98.2 7.1E-06 2.4E-10 88.8 13.6 30 629-660 295-328 (394)
136 1ds9_A Outer arm dynein; leuci 98.2 1.2E-07 4E-12 92.3 -1.3 107 280-392 41-152 (198)
137 2wfh_A SLIT homolog 2 protein 98.1 2.8E-06 9.4E-11 82.3 6.3 97 312-409 31-135 (193)
138 4b8c_D Glucose-repressible alc 98.1 9.9E-07 3.4E-11 103.3 3.3 144 331-482 219-368 (727)
139 2o6r_A Variable lymphocyte rec 98.1 2.6E-06 8.9E-11 81.0 5.6 100 312-411 28-135 (177)
140 2o6r_A Variable lymphocyte rec 98.1 4.3E-06 1.5E-10 79.5 6.8 119 314-437 9-135 (177)
141 2wfh_A SLIT homolog 2 protein 98.1 4.8E-06 1.6E-10 80.5 6.7 117 315-437 13-137 (193)
142 4fdw_A Leucine rich hypothetic 98.0 6.1E-05 2.1E-09 81.6 16.0 239 451-723 112-378 (401)
143 1w8a_A SLIT protein; signaling 98.0 2.5E-06 8.5E-11 82.4 4.6 98 313-410 30-136 (192)
144 4fdw_A Leucine rich hypothetic 98.0 0.00012 4E-09 79.3 16.4 9 427-435 136-144 (401)
145 1dce_A Protein (RAB geranylger 98.0 6.2E-06 2.1E-10 93.6 6.3 123 313-458 442-566 (567)
146 1w8a_A SLIT protein; signaling 97.9 6.6E-06 2.3E-10 79.4 5.3 118 315-437 11-137 (192)
147 1io0_A Tropomodulin; LRR prote 97.9 0.0001 3.6E-09 70.5 12.7 128 301-442 25-166 (185)
148 1io0_A Tropomodulin; LRR prote 97.9 3.8E-05 1.3E-09 73.6 9.4 114 394-509 30-162 (185)
149 4gt6_A Cell surface protein; l 97.9 4.6E-05 1.6E-09 82.4 11.0 99 547-660 284-386 (394)
150 4b8c_D Glucose-repressible alc 97.9 1.9E-06 6.3E-11 101.0 -0.3 109 304-415 216-330 (727)
151 3l2o_B F-box only protein 4; s 97.8 2.6E-06 8.8E-11 85.7 0.3 47 223-269 4-50 (312)
152 2r9u_A Variable lymphocyte rec 97.8 2.8E-05 9.6E-10 73.7 6.3 82 312-409 33-114 (174)
153 3g39_A Variable lymphocyte rec 97.7 3.4E-05 1.2E-09 72.8 6.3 82 312-409 30-111 (170)
154 4gt6_A Cell surface protein; l 97.7 0.00011 3.8E-09 79.3 10.9 99 546-661 260-366 (394)
155 2e31_A FBS1, F-box only protei 97.7 5E-06 1.7E-10 84.7 0.1 46 222-267 49-95 (297)
156 3g39_A Variable lymphocyte rec 97.6 3.2E-05 1.1E-09 73.0 3.7 85 287-372 30-114 (170)
157 2r9u_A Variable lymphocyte rec 97.6 3.7E-05 1.2E-09 72.9 3.7 86 287-373 33-118 (174)
158 3v7d_B Cell division control p 97.3 4E-05 1.4E-09 84.2 0.5 53 219-271 10-63 (464)
159 1p22_A F-BOX/WD-repeat protein 97.3 6E-05 2E-09 82.3 1.6 48 220-267 7-58 (435)
160 2ifg_A High affinity nerve gro 97.2 9.8E-05 3.4E-09 78.1 2.7 85 308-392 27-115 (347)
161 4h09_A Hypothetical leucine ri 97.2 0.0034 1.2E-07 67.0 14.2 73 580-660 238-318 (379)
162 2ifg_A High affinity nerve gro 97.2 0.00039 1.3E-08 73.4 6.3 93 315-410 11-113 (347)
163 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00011 3.9E-09 80.2 1.8 49 220-268 15-63 (445)
164 4h09_A Hypothetical leucine ri 96.8 0.0083 2.8E-07 63.9 12.9 13 423-435 155-167 (379)
165 3rw6_A Nuclear RNA export fact 96.5 0.0023 7.7E-08 64.7 5.1 62 309-372 167-232 (267)
166 3rw6_A Nuclear RNA export fact 96.3 0.00088 3E-08 67.7 0.9 42 333-374 167-210 (267)
167 1pgv_A TMD-1, tropomodulin TMD 96.0 0.016 5.5E-07 55.4 8.0 50 396-446 37-89 (197)
168 1pgv_A TMD-1, tropomodulin TMD 96.0 0.089 3E-06 50.2 13.1 41 396-436 122-167 (197)
169 3rfe_A Platelet glycoprotein I 66.5 4.2 0.00014 35.6 3.6 35 337-371 32-66 (130)
170 3rfe_A Platelet glycoprotein I 65.3 2.8 9.5E-05 36.7 2.2 38 312-349 31-68 (130)
171 1ko6_B Nuclear pore complex pr 29.3 16 0.00055 27.3 0.8 21 10-30 6-26 (64)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=8.3e-33 Score=319.26 Aligned_cols=437 Identities=19% Similarity=0.264 Sum_probs=305.8
Q ss_pred ccccCCCHHHHHHHHhcCC-hhhHHHHHHHHHHHHHhhcCCCCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCch
Q 004729 222 EIRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAI 300 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~-~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 300 (733)
|.|..||+|+|.+||+||+ .+|+.++++|||+|+.+. ...|+.+++....... ...++.++++++.|++.++...
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~--~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~ 79 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE--RWCRRKVFIGNCYAVS--PATVIRRFPKVRSVELKGKPHF 79 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH--HHHCCEEEESSTTSSC--HHHHHHHCTTCCEEEEECSCGG
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh--hhhceEEeeccccccC--HHHHHhhCCCceEEeccCCCch
Confidence 6788999999999999999 999999999999999984 3567788876643221 2356788999999999997644
Q ss_pred hHH--------------HHHHhhcCCCCCEEEecCccCChHHHHhcc-CCCCCcEEEEecCc-CCc-ccccccccCCCcc
Q 004729 301 HLL--------------VMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDAT-LGN-GVQEIPINHDQLR 363 (733)
Q Consensus 301 ~~~--------------~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~-~~~~L~~L~L~~~~-l~~-~~~~~~~~~~~L~ 363 (733)
.+. .......+++|++|+|+++.+++..+..+. .+++|++|++.+|. ++. .+..+...+++|+
T Consensus 80 ~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 80 ADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp GGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred hhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence 322 223345899999999999999988887776 69999999999984 433 2556666899999
Q ss_pred EEEeeccccc--------hhcccCCCCcEEEEcCCc-------hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCC
Q 004729 364 RLEITKCRVM--------RVSIRCPQLEHLSLKRSN-------MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 428 (733)
Q Consensus 364 ~L~L~~~~~~--------~i~~~~~~L~~L~L~~~~-------l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L 428 (733)
+|++.+|.+. .+...+++|+.|+++++. +..+...+++|++|++.+|..+ ..+...+..+++|
T Consensus 160 ~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L 237 (594)
T 2p1m_B 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQL 237 (594)
T ss_dssp EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTC
T ss_pred EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcc
Confidence 9999998732 344578899999998875 3345667899999999998544 3477888899999
Q ss_pred cEEeccCCCC-CChhHHHH---HHHhccccccc-ccccCCC--CCcCCCCCCCccEEEeCCCCCCchHHHHH-hhCCCCc
Q 004729 429 ESLDMSNCSC-VSDESLRE---IALSCANLRIL-NSSYCPN--ISLESVRLPMLTVLQLHSCEGITSASMAA-ISHSYML 500 (733)
Q Consensus 429 ~~L~L~~~~~-l~~~~l~~---l~~~~~~L~~L-~L~~~~~--l~~~~~~l~~L~~L~L~~c~~l~~~~~~~-l~~~~~L 500 (733)
++|++..+.. +....+.. ....|++|+.| .+.+... +......+++|++|++++|. +++..+.. +..+++|
T Consensus 238 ~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKL 316 (594)
T ss_dssp SEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTC
T ss_pred eEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCc
Confidence 9999887653 33333332 34577888887 3433221 11111257899999999977 77766554 5578999
Q ss_pred CEEEEecCCCCccc-----ccCCCCCcEEEecc--------ccCCccccccccccceeecccCcCCceeeeccCcccccc
Q 004729 501 EVLELDNCNLLTSV-----SLELPRLQNIRLVH--------CRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS 567 (733)
Q Consensus 501 ~~L~L~~~~~l~~~-----~~~l~~L~~L~L~~--------c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~ 567 (733)
++|++.+| +.+. ...+++|+.|++.. |..+++.++... ...|++|+.|.+..+.++.
T Consensus 317 ~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l------~~~~~~L~~L~~~~~~l~~-- 386 (594)
T 2p1m_B 317 QRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV------SMGCPKLESVLYFCRQMTN-- 386 (594)
T ss_dssp CEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH------HHHCTTCCEEEEEESCCCH--
T ss_pred CEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH------HHhchhHHHHHHhcCCcCH--
Confidence 99999987 3322 12378899999844 444544443331 2458888888777776643
Q ss_pred ccccccHHHHHhcCCCCcEEeec-----CCCCCC----hhhhhhhcCCCCCCCccEEEeecCCCCccccc-----cCCCc
Q 004729 568 LQKQENLTSLALQCQCLQEVDLT-----DCESLT----NSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-----CSTSL 633 (733)
Q Consensus 568 ~~~~~~L~~l~~~~~~L~~L~Ls-----~C~~lt----~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-----~~~sL 633 (733)
..+..+...|++|+.|+++ +|+.++ +.....+ ...+++|+.|+|++ .++.... .+++|
T Consensus 387 ----~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l--~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 387 ----AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI--VEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp ----HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH--HHHCTTCCEEECCS--SCCHHHHHHHHHHCTTC
T ss_pred ----HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH--HhhCCCccEEeecC--cccHHHHHHHHHhchhc
Confidence 4455666678899999998 677887 3333222 24678899998866 4554432 37888
Q ss_pred cEEeccccccccc-----cccccccccEEecccccccccccc-----cccCCcEEEecCCCC
Q 004729 634 VSLSLVGCRAITA-----LELKCPILEKVCLDGCDHIESASF-----VPVALQSLNLGICPK 685 (733)
Q Consensus 634 ~~L~L~~c~~L~~-----l~~~~p~L~~L~L~~c~~L~~~~~-----~~~~L~~L~L~~c~~ 685 (733)
+.|++++|. ++. +...||+|++|+|++|+. ++.+. ...+|++|++++|+.
T Consensus 459 ~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 459 EMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 888888865 432 224588888888888775 44322 135788888888863
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=5.1e-31 Score=304.27 Aligned_cols=454 Identities=18% Similarity=0.216 Sum_probs=310.0
Q ss_pred cCCCHHHHHHHHhcC-ChhhHHHHHHHHHHHHHhhcCCCCeeEEeeCCC-CCCHHHHHHHHhhCCCccEEEEcCCCchhH
Q 004729 225 MDLTDDLLHMVFSFL-DYVDLCRAAIVCRQWRAASAHEDFWRCLNFENR-KISVEQFEDVCQRYPNATEVNIYGAPAIHL 302 (733)
Q Consensus 225 ~~LP~ElL~~If~~L-~~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 302 (733)
..||+|+|.+||+|| +.+|+.++++|||+|+.+.. ..++.+.+... .. ....++.++++++.|++++++.+..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~ 88 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS--ETREHVTMALCYTA---TPDRLSRRFPNLRSLKLKGKPRAAM 88 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH--HHCCEEEESCGGGS---CHHHHHHHCTTCSEEEEECSCGGGG
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh--ccccEEEEeecccc---ChHHHHHhCCCCeEEEecCCcchhh
Confidence 479999999999999 89999999999999999853 23344544331 22 2346778899999999988664331
Q ss_pred --------------HHHHHhhcCCCCCEEEecCccCChHHHHhccC-CCC-CcEEEEecCcC-C-cccccccccCCCccE
Q 004729 303 --------------LVMKAVSLLRNLEALTLGRGQLGDAFFHALAD-CSM-LKSLNVNDATL-G-NGVQEIPINHDQLRR 364 (733)
Q Consensus 303 --------------~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~-~~~-L~~L~L~~~~l-~-~~~~~~~~~~~~L~~ 364 (733)
........+++|++|+|+++.+++..+..+.. +++ |++|+|++|.. . ..+..+...+++|++
T Consensus 89 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 168 (592)
T 3ogk_B 89 FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168 (592)
T ss_dssp GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSE
T ss_pred cccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCE
Confidence 12223347888888888888887776666655 444 88888877651 1 122233335555666
Q ss_pred EEeeccccchhcccCCCCcEEEEcCCc---hHHHhhCCCCccEEEEecCCC--CChHHHHHHHhcCCCCcEEeccCCCCC
Q 004729 365 LEITKCRVMRVSIRCPQLEHLSLKRSN---MAQAVLNCPLLHLLDIASCHK--LSDAAIRLAATSCPQLESLDMSNCSCV 439 (733)
Q Consensus 365 L~L~~~~~~~i~~~~~~L~~L~L~~~~---l~~~~~~~~~L~~L~L~~c~~--l~~~~l~~l~~~~~~L~~L~L~~~~~l 439 (733)
|++.+|.+ .+.+ +..+...+++|++|+++++.. +....+..++..|++|+.|++.+|. +
T Consensus 169 L~L~~~~~---------------~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~ 232 (592)
T 3ogk_B 169 LLMEESSF---------------SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-I 232 (592)
T ss_dssp EECTTCEE---------------ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-G
T ss_pred EECccccc---------------cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-H
Confidence 65555432 1111 455677889999999987432 3467788888899999999999976 3
Q ss_pred ChhHHHHHHHhcccccccccccCCCC------CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcc
Q 004729 440 SDESLREIALSCANLRILNSSYCPNI------SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTS 513 (733)
Q Consensus 440 ~~~~l~~l~~~~~~L~~L~L~~~~~l------~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~ 513 (733)
. .+......+++|++|.+..+... ......+++|+.|.+.++. .......+..+++|++|++++|. ++.
T Consensus 233 ~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~-l~~ 307 (592)
T 3ogk_B 233 L--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYAL-LET 307 (592)
T ss_dssp G--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCC-CCH
T ss_pred H--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCc-CCH
Confidence 3 35566778999999999854321 1233467899999998742 22223345578899999999987 443
Q ss_pred cc-----cCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeecc-----------CccccccccccccHHHH
Q 004729 514 VS-----LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITS-----------NSLQKLSLQKQENLTSL 577 (733)
Q Consensus 514 ~~-----~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~-----------n~L~~l~~~~~~~L~~l 577 (733)
.. ..+++|+.|.+.. .+.+..+... +..|++|+.|++.+ +.++ ..++..+
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~------~~~~~~L~~L~L~~g~~~~~~~~~~~~~~------~~~~~~l 373 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRN--VIGDRGLEVL------AQYCKQLKRLRIERGADEQGMEDEEGLVS------QRGLIAL 373 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEG--GGHHHHHHHH------HHHCTTCCEEEEECCCCSSTTSSTTCCCC------HHHHHHH
T ss_pred HHHHHHHHhCcCCCEEeccC--ccCHHHHHHH------HHhCCCCCEEEeecCccccccccccCccC------HHHHHHH
Confidence 22 3478999998873 3333333322 36789999999983 3333 3456677
Q ss_pred HhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeec---CCCCcccc---------ccCCCccEEecccccc-c
Q 004729 578 ALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN---CEGLTVVR---------FCSTSLVSLSLVGCRA-I 644 (733)
Q Consensus 578 ~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~---c~~L~~~~---------~~~~sL~~L~L~~c~~-L 644 (733)
...|++|+.|++ .|+.+++..+..+. ..+++|++|++.+ |..++..+ ..+++|++|+++.|.+ +
T Consensus 374 ~~~~~~L~~L~l-~~~~l~~~~~~~l~--~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 374 AQGCQELEYMAV-YVSDITNESLESIG--TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHCTTCSEEEE-EESCCCHHHHHHHH--HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HhhCccCeEEEe-ecCCccHHHHHHHH--hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 778999999999 55889988776663 3488999999984 55677642 2588999999987764 3
Q ss_pred cc-----cccccccccEEecccccccccccc-----cccCCcEEEecCCCCcccccc-----CcccccEEEecCCCCCCc
Q 004729 645 TA-----LELKCPILEKVCLDGCDHIESASF-----VPVALQSLNLGICPKLSTLGI-----EALHMVVLELKGCGVLSD 709 (733)
Q Consensus 645 ~~-----l~~~~p~L~~L~L~~c~~L~~~~~-----~~~~L~~L~L~~c~~L~~l~~-----~~~~L~~L~l~~c~~L~~ 709 (733)
.. +...+|+|++|+|++|. +++.++ ...+|++|+|++|+ ++.-.. ...+|++|++++|+ +++
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred cHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 32 33468999999999864 554321 23579999999997 654221 23469999999988 665
Q ss_pred cCC-----CCCCccEEeccC
Q 004729 710 AYI-----NCPLLTSLDASF 724 (733)
Q Consensus 710 ~~~-----~~p~L~~L~l~~ 724 (733)
.+. .+|.|....+..
T Consensus 528 ~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 528 TGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp TCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHHHHhCCCcEEEEecC
Confidence 543 677776665543
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=7.7e-27 Score=249.53 Aligned_cols=269 Identities=17% Similarity=0.315 Sum_probs=200.5
Q ss_pred ccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchh
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIH 301 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 301 (733)
..|..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+++++....+....+..+.. ++++.+++.+.. +.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~-l~ 83 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSF-MD 83 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCE-EC
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhh--ccceEEEcCCcc-cc
Confidence 457899999999999999999999999999999999999999999999988877655544432 578888887732 22
Q ss_pred HHHHHHhhcCCCCCEEEecCccCChH-HHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCC
Q 004729 302 LLVMKAVSLLRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCP 380 (733)
Q Consensus 302 ~~~~~~l~~l~~L~~L~Ls~~~i~~~-~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~ 380 (733)
... ..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+........+++|++|++++|..
T Consensus 84 ~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~-------- 154 (336)
T 2ast_B 84 QPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-------- 154 (336)
T ss_dssp SCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS--------
T ss_pred ccc-hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC--------
Confidence 221 1245678899999998888865 666778888999999988877655555555567777777666521
Q ss_pred CCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCC-CCcEEeccCCC-CCChhHHHHHHHhcccccccc
Q 004729 381 QLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP-QLESLDMSNCS-CVSDESLREIALSCANLRILN 458 (733)
Q Consensus 381 ~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~-~L~~L~L~~~~-~l~~~~l~~l~~~~~~L~~L~ 458 (733)
+.+..+...+..+++|++|++++|..+++..+...+..++ +|++|++++|. .+++..+......+++|++|+
T Consensus 155 ------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 155 ------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp ------CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred ------CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 0111244557778888888888876788777777778888 88888888885 477777777777888888888
Q ss_pred cccCCCCCc----CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 459 SSYCPNISL----ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 459 L~~~~~l~~----~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
+++|..+.. ....+++|++|++++|..+.+..+..++.+++|++|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 887764332 22356778888888776666666666677777777777766
No 4
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.2e-24 Score=248.49 Aligned_cols=421 Identities=15% Similarity=0.106 Sum_probs=285.0
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++.. +.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 578999998843 4444445678899999999999999876667788999999999999998877777677899999999
Q ss_pred eeccccchh-----cccCCCCcEEEEcCCc-hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 367 ITKCRVMRV-----SIRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 367 L~~~~~~~i-----~~~~~~L~~L~L~~~~-l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
+++|.+..+ ...+++|+.|+++++. +. ..+..+++|++|+++++ .+... .+..+..+++|+.|+++.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNY-QSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEEEEEECS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-ccccc-ChhhhhccccCceEecccC
Confidence 999987632 3568899999999876 22 34677899999999986 34432 1234566889999999987
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCc------CCCCCCCccEEEeCCCCCCchHHHHHh----hCCCCcCEEEEe
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISL------ESVRLPMLTVLQLHSCEGITSASMAAI----SHSYMLEVLELD 506 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~------~~~~l~~L~~L~L~~c~~l~~~~~~~l----~~~~~L~~L~L~ 506 (733)
. +.. ....+...+++|+.|+++++..... ....+++|++|++.++ .+++..+..+ ..+++|+.|+++
T Consensus 183 ~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 183 E-SAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp B-STT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred c-ccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccc
Confidence 6 332 2333345689999999998763322 1125789999999984 5776655544 457899999999
Q ss_pred cCCCCc--cc-------ccCCCCCcEEEecccc------------------CCccccccccccceee---cccCcCCcee
Q 004729 507 NCNLLT--SV-------SLELPRLQNIRLVHCR------------------KFADLNLRAMMLSSIM---VSNCAALHRI 556 (733)
Q Consensus 507 ~~~~l~--~~-------~~~l~~L~~L~L~~c~------------------~l~~l~l~~~~L~~l~---l~~c~~L~~L 556 (733)
+|.... .+ ...+++|+.|.+.++. +++.+.+..+.+..+. +..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 875311 11 1235677777765542 2333333333333331 1357777788
Q ss_pred eeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhh--hhhcCCCCCCCccEEEeecCCCCccccc---cCC
Q 004729 557 NITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC--EVFSDGGGCPMLKSLVLDNCEGLTVVRF---CST 631 (733)
Q Consensus 557 ~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~--~~~~~~~~l~~L~~L~L~~c~~L~~~~~---~~~ 631 (733)
++++|.+....+... .....+++|+.|++++| .++.... ..+ ..+++|++|++++| .++.++. .++
T Consensus 340 ~Ls~N~l~~~~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~lp~~~~~~~ 410 (549)
T 2z81_A 340 DLSENLMVEEYLKNS----ACKGAWPSLQTLVLSQN-HLRSMQKTGEIL---LTLKNLTSLDISRN-TFHPMPDSCQWPE 410 (549)
T ss_dssp ECCSSCCCHHHHHHH----TCTTSSTTCCEEECTTS-CCCCHHHHHHHG---GGCTTCCEEECTTC-CCCCCCSCCCCCT
T ss_pred EccCCccccccccch----hhhhccccCcEEEccCC-cccccccchhhh---hcCCCCCEEECCCC-CCccCChhhcccc
Confidence 887777664321100 01235678888888874 5654321 223 45778888888777 4555543 456
Q ss_pred CccEEeccccccccccccc-cccccEEecccccccccccccccCCcEEEecCCCCccccccC--cccccEEEecCCCCCC
Q 004729 632 SLVSLSLVGCRAITALELK-CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIE--ALHMVVLELKGCGVLS 708 (733)
Q Consensus 632 sL~~L~L~~c~~L~~l~~~-~p~L~~L~L~~c~~L~~~~~~~~~L~~L~L~~c~~L~~l~~~--~~~L~~L~l~~c~~L~ 708 (733)
+|+.|++++|. ++.++.. .++|++|++++| .+++.....++|++|+++++ +++.+|.. ...|+.|++++|.. +
T Consensus 411 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l-~ 486 (549)
T 2z81_A 411 KMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQL-K 486 (549)
T ss_dssp TCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCC-C
T ss_pred cccEEECCCCC-cccccchhcCCceEEECCCC-ChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCcc-C
Confidence 78888888753 5555432 257888888884 45554334557888888888 47777643 23688888888754 3
Q ss_pred ccC----CCCCCccEEeccCcc
Q 004729 709 DAY----INCPLLTSLDASFCR 726 (733)
Q Consensus 709 ~~~----~~~p~L~~L~l~~C~ 726 (733)
.+. .++++|+.|++++++
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSC
T ss_pred CcCHHHHhcCcccCEEEecCCC
Confidence 322 378888999987765
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.8e-24 Score=250.27 Aligned_cols=417 Identities=17% Similarity=0.131 Sum_probs=200.4
Q ss_pred hhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCcc
Q 004729 284 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (733)
Q Consensus 284 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (733)
..+++|+.|+++++ .+....+..+..+++|++|+|++|.+....+..+..+++|++|++++|.+....+.....+++|+
T Consensus 54 ~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 54 SRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp TTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred ccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 34556666666653 23333334455666666666666666554455556666666666666665543333445566666
Q ss_pred EEEeeccccchhc----ccCCCCcEEEEcCCchH----HHhhCCCCcc--EEEEecCCCCChHHHHHHHhcCCCCcEEec
Q 004729 364 RLEITKCRVMRVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLH--LLDIASCHKLSDAAIRLAATSCPQLESLDM 433 (733)
Q Consensus 364 ~L~L~~~~~~~i~----~~~~~L~~L~L~~~~l~----~~~~~~~~L~--~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 433 (733)
+|++++|.+..+. ..+++|+.|++++|.+. ..+..+++|+ +|+++++ .+..... ..+ ....|+.|++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~-~~~-~~~~L~~L~l 209 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEP-GAF-DSAVFQSLNF 209 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEECT-TTT-TTCEEEEEEC
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccCh-hHh-hhcccccccc
Confidence 6666666554321 23566666666665443 2355566666 5555553 2222110 000 1123334443
Q ss_pred cCCCCCChhHHHHHHHhc-------------------------------ccccccccccCCCC--CcC-CCCCCCccEEE
Q 004729 434 SNCSCVSDESLREIALSC-------------------------------ANLRILNSSYCPNI--SLE-SVRLPMLTVLQ 479 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~-------------------------------~~L~~L~L~~~~~l--~~~-~~~l~~L~~L~ 479 (733)
.++.. +......+ .+|+.|+++++... ... ...+++|++|+
T Consensus 210 ~~~~~-----~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 210 GGTQN-----LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp TTCSC-----HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred CCchh-----HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 33320 00000010 03444444443311 111 22345555555
Q ss_pred eCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEecccc--------------CCcccccccccc
Q 004729 480 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCR--------------KFADLNLRAMML 542 (733)
Q Consensus 480 L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~--------------~l~~l~l~~~~L 542 (733)
++++ .++.. ...+..+++|++|++++|......+. .+++|+.|.+.++. +++.+.+..+.+
T Consensus 285 l~~n-~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 285 LTAT-HLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp CTTS-CCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred ccCC-ccCCC-ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 5553 23311 12234455555555555532221111 24455555544332 111222222222
Q ss_pred cee-----ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEe
Q 004729 543 SSI-----MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 617 (733)
Q Consensus 543 ~~l-----~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L 617 (733)
..+ .+..+++|+.|++.+|.+..+.... +..+++|+.|++++| .++...... ....+++|+.|++
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~--~~~~l~~L~~L~l 432 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-------FKECPQLELLDLAFT-RLKVKDAQS--PFQNLHLLKVLNL 432 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-------TTTCTTCSEEECTTC-CEECCTTCC--TTTTCTTCCEEEC
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHH-------hcCCccCCeEECCCC-cCCCcccch--hhhCcccCCEEEC
Confidence 222 2456666777777766665442211 224567777777764 443322111 1245677777777
Q ss_pred ecCCCCcccc----ccCCCccEEeccccccccc-------cccccccccEEecccccccccc---cc-cccCCcEEEecC
Q 004729 618 DNCEGLTVVR----FCSTSLVSLSLVGCRAITA-------LELKCPILEKVCLDGCDHIESA---SF-VPVALQSLNLGI 682 (733)
Q Consensus 618 ~~c~~L~~~~----~~~~sL~~L~L~~c~~L~~-------l~~~~p~L~~L~L~~c~~L~~~---~~-~~~~L~~L~L~~ 682 (733)
++|. ++... ..+++|++|+++++. +.. ....+++|++|++++|. ++.. .+ ...+|++|++++
T Consensus 433 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 433 SHSL-LDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp TTCC-CBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCc-cCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCC
Confidence 7663 33321 146677777777753 222 12256777777777753 3322 11 134677777777
Q ss_pred CCCccccccCcc----cccEEEecCCCCCCccC---CCCCCccEEeccCcc
Q 004729 683 CPKLSTLGIEAL----HMVVLELKGCGVLSDAY---INCPLLTSLDASFCR 726 (733)
Q Consensus 683 c~~L~~l~~~~~----~L~~L~l~~c~~L~~~~---~~~p~L~~L~l~~C~ 726 (733)
+. ++.++.... .| .|++++|..-.... ..+++|+.|++++++
T Consensus 510 N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 510 NR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp SC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred Cc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 63 555443222 35 67777764432111 156777777777654
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=5.4e-25 Score=261.42 Aligned_cols=368 Identities=18% Similarity=0.194 Sum_probs=191.3
Q ss_pred HhhCCCccEEEEcCCCchhHHHHHH-hhcCCCCCEEEecCccCChHHHHh---ccCCCCCcEEEEecCcCCccccccccc
Q 004729 283 CQRYPNATEVNIYGAPAIHLLVMKA-VSLLRNLEALTLGRGQLGDAFFHA---LADCSMLKSLNVNDATLGNGVQEIPIN 358 (733)
Q Consensus 283 ~~~~~~L~~L~L~~~~~~~~~~~~~-l~~l~~L~~L~Ls~~~i~~~~~~~---L~~~~~L~~L~L~~~~l~~~~~~~~~~ 358 (733)
+..+++|+.|+++++. +....+.. +..+++|++|+|++|.+....+.. +..+++|++|++++|.+....+. ..
T Consensus 122 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~ 198 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SR 198 (768)
T ss_dssp GGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TT
T ss_pred HhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--cc
Confidence 3456667777776632 22111111 245667777777777666544443 56677777777777665543332 45
Q ss_pred CCCccEEEeeccccchh---cccCCCCcEEEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEE
Q 004729 359 HDQLRRLEITKCRVMRV---SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESL 431 (733)
Q Consensus 359 ~~~L~~L~L~~~~~~~i---~~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L 431 (733)
+++|++|++++|.+... ...+++|++|++++|.+. ..+..+++|++|++++|. +... ++. ..+++|++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~~~--~~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ-FVGP-IPP--LPLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC-CEES-CCC--CCCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc-ccCc-cCc--cccCCCCEE
Confidence 67777777777665432 245667777777766543 345566777777777653 2211 000 145666677
Q ss_pred eccCCCCCChhHHHHHHHhcccccccccccCC---CCCcCCCCCCCccEEEeCCCCCCc-hHHHHHhhCCCCcCEEEEec
Q 004729 432 DMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGIT-SASMAAISHSYMLEVLELDN 507 (733)
Q Consensus 432 ~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~---~l~~~~~~l~~L~~L~L~~c~~l~-~~~~~~l~~~~~L~~L~L~~ 507 (733)
+++++. ++......+...+++|++|+++++. .++.....+++|++|++.++. +. ......+..+++|++|++++
T Consensus 275 ~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 275 SLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp ECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCS
T ss_pred ECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcC
Confidence 666654 2221111222234667777776665 223333456677777777643 33 33333466667777777776
Q ss_pred CCCCcccccC---CC-CCcEEEeccc---------------cCCcccccccccccee---ecccCcCCceeeeccCcccc
Q 004729 508 CNLLTSVSLE---LP-RLQNIRLVHC---------------RKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQK 565 (733)
Q Consensus 508 ~~~l~~~~~~---l~-~L~~L~L~~c---------------~~l~~l~l~~~~L~~l---~l~~c~~L~~L~l~~n~L~~ 565 (733)
|.....+|.. ++ +|+.|++.++ +.++.+.+..+.+... .+.++++|+.|++.+|.++.
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 6433233332 22 5666655442 2233333333333322 34556666666666666554
Q ss_pred ccccccccH-----------------HHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc
Q 004729 566 LSLQKQENL-----------------TSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 628 (733)
Q Consensus 566 l~~~~~~~L-----------------~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~ 628 (733)
..+.....+ ......+++|+.|++++| .++...+..+ +.+++|+.|+|++|.-...++.
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGL---SNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGG---GGCTTCCEEECCSSCCCSCCCG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHH---hcCCCCCEEEccCCccCCcCCh
Confidence 322111110 011123456666666653 4443333333 3466666666666642223322
Q ss_pred ---cCCCccEEeccccccccccc---cccccccEEeccccc
Q 004729 629 ---CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCD 663 (733)
Q Consensus 629 ---~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L~L~~c~ 663 (733)
.+++|+.|++++|.--..++ ..+++|+.|++++|+
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 45667777777654322333 256777777777653
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.8e-24 Score=254.12 Aligned_cols=414 Identities=19% Similarity=0.159 Sum_probs=279.5
Q ss_pred hhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCcc
Q 004729 284 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (733)
Q Consensus 284 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (733)
..+++|+.|+++++. +....+. ++.+++|++|++++|.+....+..+..+++|++|++++|.+...++.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred ccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 456788999988754 2222222 778899999999999998888889999999999999999877655544 789999
Q ss_pred EEEeeccccc-hhc----ccCCCCcEEEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEecc
Q 004729 364 RLEITKCRVM-RVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 434 (733)
Q Consensus 364 ~L~L~~~~~~-~i~----~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~ 434 (733)
+|++.+|.+. .++ ..+++|+.|++++|.+. ..+..+++|++|++++|. +........+..+++|+.|+++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCc
Confidence 9999999875 333 23589999999998654 457789999999999863 3311112336678999999999
Q ss_pred CCCCCChhHHHHHHHhcc-cccccccccCCC---CCcCCCC--CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 435 NCSCVSDESLREIALSCA-NLRILNSSYCPN---ISLESVR--LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 435 ~~~~l~~~~l~~l~~~~~-~L~~L~L~~~~~---l~~~~~~--l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
++. ++......+. .++ +|+.|+++++.. +...... +++|++|++.+| .++......+..+++|++|++++|
T Consensus 352 ~n~-l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 352 FNE-FSGELPESLT-NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp SSE-EEECCCTTHH-HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSS
T ss_pred CCc-cCccccHHHH-hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCC
Confidence 986 4322222232 444 899999998762 2222223 778999999985 455555566788899999999988
Q ss_pred CCCccccc---CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCc
Q 004729 509 NLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585 (733)
Q Consensus 509 ~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~ 585 (733)
......|. .+++|+.|.+.++.-...+. -.+..+++|+.|++.+|.+....+. ....+++|+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~ 493 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--------QELMYVKTLETLILDFNDLTGEIPS-------GLSNCTNLN 493 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCC--------HHHcCCCCceEEEecCCcccCcCCH-------HHhcCCCCC
Confidence 54334443 36788888887764211111 0256677888888888877654321 123567888
Q ss_pred EEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc---cCCCccEEeccccccccccc--------------
Q 004729 586 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF---CSTSLVSLSLVGCRAITALE-------------- 648 (733)
Q Consensus 586 ~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~---~~~sL~~L~L~~c~~L~~l~-------------- 648 (733)
.|++++| .++...+..+ +.+++|+.|+|++|.-...++. .+++|+.|++++|+-...++
T Consensus 494 ~L~L~~N-~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 494 WISLSNN-RLTGEIPKWI---GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp EEECCSS-CCCSCCCGGG---GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred EEEccCC-ccCCcCChHH---hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 8888874 5655444444 4577788888877743333332 56777788777653211111
Q ss_pred -----------------------------------------------------------cccccccEEeccccccccc-c
Q 004729 649 -----------------------------------------------------------LKCPILEKVCLDGCDHIES-A 668 (733)
Q Consensus 649 -----------------------------------------------------------~~~p~L~~L~L~~c~~L~~-~ 668 (733)
..+++|+.|+++++ .++. +
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~i 648 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYI 648 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccC
Confidence 12577888888884 3432 1
Q ss_pred --cc-cccCCcEEEecCCCCcc-ccccC---cccccEEEecCCCCC---CccCCCCCCccEEeccCcc
Q 004729 669 --SF-VPVALQSLNLGICPKLS-TLGIE---ALHMVVLELKGCGVL---SDAYINCPLLTSLDASFCR 726 (733)
Q Consensus 669 --~~-~~~~L~~L~L~~c~~L~-~l~~~---~~~L~~L~l~~c~~L---~~~~~~~p~L~~L~l~~C~ 726 (733)
.+ ...+|+.|+++++. ++ .+|.. ...|+.|++++|..- +....++++|+.|++++++
T Consensus 649 p~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CHHHhccccCCEEeCcCCc-cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 11 23478899998885 55 45532 236889999987753 3334478899999998875
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.2e-23 Score=241.12 Aligned_cols=418 Identities=16% Similarity=0.145 Sum_probs=203.8
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ ..+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 32 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 3455566555 223333333445556666666666655544444555556666666666555544444455556666666
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecCCCCChHH---HHHHH------------
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAA---IRLAA------------ 422 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~~~---l~~l~------------ 422 (733)
+++|.+..+. ..+++|++|++++|.+. ..+..+++|++|+++++ .+.... +..+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeecc
Confidence 6665544322 34555666666555432 23455556666666553 222210 11110
Q ss_pred -----------hcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC-----------------------------
Q 004729 423 -----------TSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC----------------------------- 462 (733)
Q Consensus 423 -----------~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~----------------------------- 462 (733)
....+|+.|+++++. ++...+......+++|+.+.+...
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNF-NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCC-SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccCceeeeeeccCCc-cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 011256666666665 444445555556666555444211
Q ss_pred ---CCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCC---
Q 004729 463 ---PNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKF--- 532 (733)
Q Consensus 463 ---~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l--- 532 (733)
..+. .....+++|+.|++.++. +.... .+..+++|++|++++|.. ..+|. .+++|+.|.+.++..+
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE--DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC--CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC
T ss_pred cccccccccccccccCCCCCEEEecCcc-chhhh--hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccch
Confidence 1000 012245677777777643 33322 455667777777777754 44442 4567777777665322
Q ss_pred --------cccccccccccee-----ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhh
Q 004729 533 --------ADLNLRAMMLSSI-----MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSV 599 (733)
Q Consensus 533 --------~~l~l~~~~L~~l-----~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~ 599 (733)
+.+.+..+.+..+ .+..+++|+.|++.+|.+..+. . ....+++|+.|++++| .++...
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~----~~~~l~~L~~L~l~~n-~l~~~~ 415 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS----A----NFMGLEELQHLDFQHS-TLKRVT 415 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC----C----CCTTCTTCCEEECTTS-EEESTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch----h----hccCCCCCCeeECCCC-ccCCcc
Confidence 2222222222211 1334455555555555544332 0 1123456666666653 333221
Q ss_pred hhhhcCCCCCCCccEEEeecCCCCcccc---ccCCCccEEeccccccccc--c---ccccccccEEeccccccccccc--
Q 004729 600 CEVFSDGGGCPMLKSLVLDNCEGLTVVR---FCSTSLVSLSLVGCRAITA--L---ELKCPILEKVCLDGCDHIESAS-- 669 (733)
Q Consensus 600 ~~~~~~~~~l~~L~~L~L~~c~~L~~~~---~~~~sL~~L~L~~c~~L~~--l---~~~~p~L~~L~L~~c~~L~~~~-- 669 (733)
. ......+++|+.|++++|......+ ..+++|+.|++++|. +.. + ...+++|++|++++| .++...
T Consensus 416 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 491 (606)
T 3vq2_A 416 E--FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG 491 (606)
T ss_dssp T--TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred C--hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccChh
Confidence 1 0112455666666666653222121 145666666666643 222 1 124566666666664 232211
Q ss_pred -c-cccCCcEEEecCCCCccccccC----cccccEEEecCCCCCCccCC---CCC-CccEEeccCcc
Q 004729 670 -F-VPVALQSLNLGICPKLSTLGIE----ALHMVVLELKGCGVLSDAYI---NCP-LLTSLDASFCR 726 (733)
Q Consensus 670 -~-~~~~L~~L~L~~c~~L~~l~~~----~~~L~~L~l~~c~~L~~~~~---~~p-~L~~L~l~~C~ 726 (733)
+ ...+|++|++++|. ++.+... ...|+.|++++|+ ++.+.. .+| +|+.|++++++
T Consensus 492 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred hhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 1 13466666666663 5544221 1246667776665 333222 454 47777766543
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=2e-23 Score=241.39 Aligned_cols=417 Identities=17% Similarity=0.141 Sum_probs=260.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
+.++.|++++ ..+.......+..+++|++|+|++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 33 ~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTT-CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccC-CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 3689999998 445555556778999999999999999877778888999999999999988877677778899999999
Q ss_pred eeccccchh----cccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCc--EEeccCC
Q 004729 367 ITKCRVMRV----SIRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLE--SLDMSNC 436 (733)
Q Consensus 367 L~~~~~~~i----~~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~--~L~L~~~ 436 (733)
+++|.+..+ ...+++|++|++++|.+..+ +..+++|++|+++++ .+.... ...+..+++|+ .|+++++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLS-KEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEEC-HHHHHTTTTCCSEEEECTTC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccC-hhhhhhhcccceeEEecCCC
Confidence 999987754 25688999999999876542 334889999999985 455432 23456788898 8888887
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCcC----------------------------C---CCCCCccEEEeCCCCC
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISLE----------------------------S---VRLPMLTVLQLHSCEG 485 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~----------------------------~---~~l~~L~~L~L~~c~~ 485 (733)
. ++......+ ...+|+.|++.++..+... . ..-.+|++|++.++ .
T Consensus 190 ~-l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~ 265 (606)
T 3t6q_A 190 D-IAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-Y 265 (606)
T ss_dssp C-CCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-C
T ss_pred c-cCccChhHh--hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-c
Confidence 6 443222211 3467888888876421100 0 00127889999984 5
Q ss_pred CchHHHHHhhCCCCcCEEEEecCCCCcccccC---CCCCcEEEecccc-------------CCccccccccccc-e---e
Q 004729 486 ITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCR-------------KFADLNLRAMMLS-S---I 545 (733)
Q Consensus 486 l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~---l~~L~~L~L~~c~-------------~l~~l~l~~~~L~-~---l 545 (733)
++......++.+++|++|++++|. ++.+|.. +++|+.|.+.++. +++.+.+..+.+. . -
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred cCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 666666668889999999999984 5666653 5788999887653 1222222222111 0 1
Q ss_pred ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcc
Q 004729 546 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 625 (733)
Q Consensus 546 ~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~ 625 (733)
.+..+++|+.|++++|.+..+... ......+++|+.|++++| .++......+ ..+++|+.|+++++. ++.
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~-l~~ 414 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCC-----NLQLRNLSHLQSLNLSYN-EPLSLKTEAF---KECPQLELLDLAFTR-LKV 414 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEES-----TTTTTTCTTCCEEECCSC-SCEEECTTTT---TTCTTCSEEECTTCC-EEC
T ss_pred hhhccCcCCEEECCCCccccccCc-----chhcccCCCCCEEECCCC-cCCcCCHHHh---cCCccCCeEECCCCc-CCC
Confidence 234455566666666555543210 011224556666666663 4443322222 456666666666653 222
Q ss_pred c-c----ccCCCccEEecccccccccc----ccccccccEEecccccccccc------cc-cccCCcEEEecCCCCcccc
Q 004729 626 V-R----FCSTSLVSLSLVGCRAITAL----ELKCPILEKVCLDGCDHIESA------SF-VPVALQSLNLGICPKLSTL 689 (733)
Q Consensus 626 ~-~----~~~~sL~~L~L~~c~~L~~l----~~~~p~L~~L~L~~c~~L~~~------~~-~~~~L~~L~L~~c~~L~~l 689 (733)
. + ..+++|+.|++++|. +... ...+++|++|+++++. +++. .+ ...+|++|++++|. ++.+
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 491 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSI 491 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEE
T ss_pred cccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCcc
Confidence 2 1 145666666666643 2222 1246677777777643 2221 11 13467777777663 5555
Q ss_pred ccCc----ccccEEEecCCCCCCc---cCCCCCCccEEeccCc
Q 004729 690 GIEA----LHMVVLELKGCGVLSD---AYINCPLLTSLDASFC 725 (733)
Q Consensus 690 ~~~~----~~L~~L~l~~c~~L~~---~~~~~p~L~~L~l~~C 725 (733)
+... ..|++|++++|..-.. ...++++| .|++++|
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 3222 2477777777643221 12256666 6766665
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=3.7e-23 Score=242.60 Aligned_cols=424 Identities=17% Similarity=0.132 Sum_probs=211.0
Q ss_pred HhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCc
Q 004729 283 CQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQL 362 (733)
Q Consensus 283 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L 362 (733)
+...++|+.|+++++ .+.......++.+++|++|++++|.+....+..+..+++|++|++++|.+....+.....+++|
T Consensus 69 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp HHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred HhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccC
Confidence 445677777777763 3333333346667777777777777664444556677777777777777665555555667777
Q ss_pred cEEEeeccccchhc------ccCCCCcEEEEcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHh--cCCC---
Q 004729 363 RRLEITKCRVMRVS------IRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAAT--SCPQ--- 427 (733)
Q Consensus 363 ~~L~L~~~~~~~i~------~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~--~~~~--- 427 (733)
++|++++|.+..+. ..+++|+.|+++++.+.. .+..+++|+.|.+.++ .+.......+.. ..++
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCE
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc-ccChhhHHHHHHHhhhccccE
Confidence 77777777654332 134677777777665432 2334555555555443 222222111110 1234
Q ss_pred -----------------------CcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC---CcCCCCCCCccEEEeC
Q 004729 428 -----------------------LESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI---SLESVRLPMLTVLQLH 481 (733)
Q Consensus 428 -----------------------L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l---~~~~~~l~~L~~L~L~ 481 (733)
|+.|+++++. ++.... ..+..+++|++|+++++... +.....+++|++|++.
T Consensus 227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGN-DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp EECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred EEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCc-ccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 4444444443 221111 11123445555555444311 1122244555555554
Q ss_pred CCCCCchH--------HHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEecccc-----------------CC
Q 004729 482 SCEGITSA--------SMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCR-----------------KF 532 (733)
Q Consensus 482 ~c~~l~~~--------~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~-----------------~l 532 (733)
++...... ....+..+++|++|++++|.. ..++. .+++|+.|.+.++. .+
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 42111000 001234566677777766642 22221 25677777776542 33
Q ss_pred cccccccccccee---ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCC
Q 004729 533 ADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGC 609 (733)
Q Consensus 533 ~~l~l~~~~L~~l---~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l 609 (733)
+.+.+..+.+..+ .+..+++|+.|++.+|.+...... ..+..+++|+.|++++| .++......| ..+
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~~ 453 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG------QEWRGLENIFEIYLSYN-KYLQLTRNSF---ALV 453 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS------GGGTTCTTCCEEECCSC-SEEECCTTTT---TTC
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc------ccccCcccccEEecCCC-CcceeChhhh---hcC
Confidence 3444444444443 345667777777777776532110 11224566777777664 3333222222 345
Q ss_pred CCccEEEeecCCC--Ccccc---ccCCCccEEeccccccccccc----cccccccEEeccccccccccc-----------
Q 004729 610 PMLKSLVLDNCEG--LTVVR---FCSTSLVSLSLVGCRAITALE----LKCPILEKVCLDGCDHIESAS----------- 669 (733)
Q Consensus 610 ~~L~~L~L~~c~~--L~~~~---~~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~~c~~L~~~~----------- 669 (733)
++|+.|++.++.- +...+ ..+++|+.|+++++ .++.++ ..+++|++|+++++ .++...
T Consensus 454 ~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYF 531 (680)
T ss_dssp TTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCT
T ss_pred cccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchh
Confidence 5666666655421 11111 14556666666663 344332 24566666666663 233210
Q ss_pred c-cccCCcEEEecCCCCccccccCc----ccccEEEecCCCCCCccC----CCCCCccEEeccCc
Q 004729 670 F-VPVALQSLNLGICPKLSTLGIEA----LHMVVLELKGCGVLSDAY----INCPLLTSLDASFC 725 (733)
Q Consensus 670 ~-~~~~L~~L~L~~c~~L~~l~~~~----~~L~~L~l~~c~~L~~~~----~~~p~L~~L~l~~C 725 (733)
+ ...+|++|+++++ +++.++... ..|+.|+++++. ++.+. .++++|+.|+++++
T Consensus 532 ~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 532 LKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred hcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCC
Confidence 0 1235666666655 355555322 246666665543 22222 24566666666655
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=5.4e-23 Score=241.17 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=152.8
Q ss_pred HhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCc
Q 004729 283 CQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQL 362 (733)
Q Consensus 283 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L 362 (733)
+..+++++.|++++. .+....+..+..+++|++|+|++|.+.......+..+++|++|++++|.+....+..+..+++|
T Consensus 45 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 445677788887763 3444444556677888888888777764444456777888888888877765554556677788
Q ss_pred cEEEeeccccchhc----ccCCCCcEEEEcCCchHHH----h--hCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEe
Q 004729 363 RRLEITKCRVMRVS----IRCPQLEHLSLKRSNMAQA----V--LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 432 (733)
Q Consensus 363 ~~L~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~~----~--~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~ 432 (733)
++|++++|.+.... ..+++|+.|++++|.+... + ..+++|++|+++++ .+.... +..+..+++|+.|+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFS-PGCFHAIGRLFGLF 201 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBC-TTGGGGSSEECEEE
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccC-hhhhhhhhhhhhhh
Confidence 88888877665332 3577788888877654321 1 24577888888775 333221 22345667788888
Q ss_pred ccCCCCCChhHHHHHHH--hcccccccccccCCCCCc---CCCCC--CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEE
Q 004729 433 MSNCSCVSDESLREIAL--SCANLRILNSSYCPNISL---ESVRL--PMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505 (733)
Q Consensus 433 L~~~~~l~~~~l~~l~~--~~~~L~~L~L~~~~~l~~---~~~~l--~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L 505 (733)
+.++. +.......+.. ..++|+.|+++++..... ....+ ++|++|+++++ .+.......++.+++|++|++
T Consensus 202 l~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 202 LNNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp CTTCC-CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred ccccc-cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeC
Confidence 87765 44444433322 346888888887753221 11223 45899999884 465555556778888999999
Q ss_pred ecCCCCccccc---CCCCCcEEEecc
Q 004729 506 DNCNLLTSVSL---ELPRLQNIRLVH 528 (733)
Q Consensus 506 ~~~~~l~~~~~---~l~~L~~L~L~~ 528 (733)
++|......+. .+++|+.|.+.+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CCCccCccChhhhcCCCCccEEeccc
Confidence 88854333222 356777777754
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=7.5e-23 Score=236.62 Aligned_cols=402 Identities=15% Similarity=0.132 Sum_probs=240.1
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCc-ccccccccCCCcc
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGN-GVQEIPINHDQLR 363 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~L~ 363 (733)
..++|+.|+++++ .+....+..++.+++|++|++++|.+....+..++++++|++|++++|.+.. .++.....+++|+
T Consensus 78 ~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 78 GLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred chhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 3444555555442 2222223334445555555555554443322334455555555555554443 2344444555555
Q ss_pred EEEeeccccchhcc----cCCC----CcEEEEcCCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEe
Q 004729 364 RLEITKCRVMRVSI----RCPQ----LEHLSLKRSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 432 (733)
Q Consensus 364 ~L~L~~~~~~~i~~----~~~~----L~~L~L~~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~ 432 (733)
+|++++|.+..+.. .+.+ +..|+++++.+..+ .....+|++|+++++ .+....++..+..++.|+.++
T Consensus 157 ~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN-FNSSNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp EEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC-CSCHHHHHHHHHTTTTCEEEE
T ss_pred EEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC-ccchhHHHHHhcccccccccc
Confidence 55555554433221 1111 22455554443321 112237889999885 466556666677777777666
Q ss_pred cc--------------------------------CCCCCChhHHHHHHHhcccccccccccCCCCCc-CCCCCCCccEEE
Q 004729 433 MS--------------------------------NCSCVSDESLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQ 479 (733)
Q Consensus 433 L~--------------------------------~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~ 479 (733)
+. ....+...... ...+++|+.|++.++..... ....+++|++|+
T Consensus 236 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~ 313 (606)
T 3vq2_A 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313 (606)
T ss_dssp EEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEE
T ss_pred ccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhhhccccccCCEEE
Confidence 52 22223222222 34667888888877663222 233567788888
Q ss_pred eCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccc---------------cCCccccccccccc
Q 004729 480 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHC---------------RKFADLNLRAMMLS 543 (733)
Q Consensus 480 L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c---------------~~l~~l~l~~~~L~ 543 (733)
+.+|. +.... .+ .+++|++|++++|..+...+. .+++|+.|++.++ ++++.+.+..+.+.
T Consensus 314 l~~n~-l~~lp--~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 314 IIRCQ-LKQFP--TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp EESCC-CSSCC--CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred ccccc-Ccccc--cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence 88754 33322 33 677788888877755554433 3567777776543 33444444444444
Q ss_pred ee--ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 544 SI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 544 ~l--~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
.+ .+..+++|+.|++.+|.+..+... .....+++|+.|++++| .++......+ +.+++|++|++++|.
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHSTLKRVTEF------SAFLSLEKLLYLDISYT-NTKIDFDGIF---LGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSEEESTTTT------TTTTTCTTCCEEECTTS-CCEECCTTTT---TTCTTCCEEECTTCE
T ss_pred cchhhccCCCCCCeeECCCCccCCccCh------hhhhccccCCEEECcCC-CCCccchhhh---cCCCCCCEEECCCCc
Confidence 43 467889999999999998766321 11236789999999995 6665443333 678999999999984
Q ss_pred CCcc--cc---ccCCCccEEeccccccccccc----cccccccEEecccccccccc---ccc-ccCCcEEEecCCCCccc
Q 004729 622 GLTV--VR---FCSTSLVSLSLVGCRAITALE----LKCPILEKVCLDGCDHIESA---SFV-PVALQSLNLGICPKLST 688 (733)
Q Consensus 622 ~L~~--~~---~~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~~c~~L~~~---~~~-~~~L~~L~L~~c~~L~~ 688 (733)
++. ++ ..+++|+.|++++| .++.+. ..+++|++|+++++ .++.. .+. ..+|++|++++|. ++.
T Consensus 460 -l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~ 535 (606)
T 3vq2_A 460 -FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IET 535 (606)
T ss_dssp -EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCC
T ss_pred -CCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-Ccc
Confidence 443 22 26799999999997 454443 36899999999996 44442 222 4589999999995 888
Q ss_pred cccC--c-c-cccEEEecCCCCCC
Q 004729 689 LGIE--A-L-HMVVLELKGCGVLS 708 (733)
Q Consensus 689 l~~~--~-~-~L~~L~l~~c~~L~ 708 (733)
+|.. . + +|+.|++++++..-
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCHhHhhhcccCcEEEccCCCccc
Confidence 8854 2 2 49999999987653
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=8.1e-23 Score=233.40 Aligned_cols=398 Identities=15% Similarity=0.166 Sum_probs=265.6
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+|++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++ ..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 68999999999988766677889999999999999888766666778899999999999876443 46788888888
Q ss_pred cCCchHH-----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 388 KRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 388 ~~~~l~~-----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
++|.+.. .+..+++|++|+++++..+.... ...+..+++|++|+++++. ++...... ...+++|++|++.++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALS-LRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CCEECTTT-TTTCSEEEEEEEECS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCc-ccccChhh-hhccccCceEecccC
Confidence 8876652 35678888888888864343321 1234567788888888766 44322222 225677777777765
Q ss_pred CCCCcCC---CCCCCccEEEeCCCCCCchHH---HHHhhCCCCcCEEEEecCCCCccc-------ccCCCCCcEEEeccc
Q 004729 463 PNISLES---VRLPMLTVLQLHSCEGITSAS---MAAISHSYMLEVLELDNCNLLTSV-------SLELPRLQNIRLVHC 529 (733)
Q Consensus 463 ~~l~~~~---~~l~~L~~L~L~~c~~l~~~~---~~~l~~~~~L~~L~L~~~~~l~~~-------~~~l~~L~~L~L~~c 529 (733)
....... ..+++|++|+++++ .+.... ......+++|+.|++.++...... ...+++|+.+.+.+|
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred cccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 4221111 14677778877774 333221 011223567777777776321111 123567777777665
Q ss_pred cCCcccccc--------c-cccceeec------------------ccCcCCceeeeccCccccccccccccHHHHHhcCC
Q 004729 530 RKFADLNLR--------A-MMLSSIMV------------------SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQ 582 (733)
Q Consensus 530 ~~l~~l~l~--------~-~~L~~l~l------------------~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~ 582 (733)
.--....+. . ..++.+.+ ...++|+.|++.+|.+..+. ..+...++
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip-------~~~~~~l~ 334 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP-------CSFSQHLK 334 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC-------HHHHHHCT
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC-------HHHHhcCc
Confidence 311100000 0 01111111 12356777888777766442 12334689
Q ss_pred CCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc------ccCCCccEEecccccccccccc---cccc
Q 004729 583 CLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR------FCSTSLVSLSLVGCRAITALEL---KCPI 653 (733)
Q Consensus 583 ~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~------~~~~sL~~L~L~~c~~L~~l~~---~~p~ 653 (733)
+|+.|++++| .+++..+......+.+++|+.|++++| .++.++ ..+++|+.|++++| .++.++. .+++
T Consensus 335 ~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 335 SLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEK 411 (549)
T ss_dssp TCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTT
T ss_pred cccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhccccc
Confidence 9999999994 787765443333478999999999998 465442 37899999999996 5776653 5789
Q ss_pred ccEEecccccccccc-cccccCCcEEEecCCCCccccccCcccccEEEecCCCCCCccCC--CCCCccEEeccCcc
Q 004729 654 LEKVCLDGCDHIESA-SFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYI--NCPLLTSLDASFCR 726 (733)
Q Consensus 654 L~~L~L~~c~~L~~~-~~~~~~L~~L~L~~c~~L~~l~~~~~~L~~L~l~~c~~L~~~~~--~~p~L~~L~l~~C~ 726 (733)
|++|+++++. ++.+ +..+.+|++|++++| +++.++.....|++|++++|. ++.+.. .+++|+.|++++|.
T Consensus 412 L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 412 MRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp CCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSSC
T ss_pred ccEEECCCCC-cccccchhcCCceEEECCCC-ChhhhcccCChhcEEECCCCc-cCcCCCcccCccCCEEecCCCc
Confidence 9999999954 5543 334569999999999 588877666789999999985 443332 68999999998873
No 14
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=5.6e-23 Score=236.91 Aligned_cols=251 Identities=20% Similarity=0.208 Sum_probs=118.0
Q ss_pred cCCCCcEEEEcCC---chHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccc
Q 004729 378 RCPQLEHLSLKRS---NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL 454 (733)
Q Consensus 378 ~~~~L~~L~L~~~---~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L 454 (733)
.+++|+.|.+.+. .+..++..+++|++|++++|. +.+..+..++..+++|+.|++.+ .+.+..+..+...|++|
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCC
Confidence 3444555554432 223334455566666666554 55555545555566666666652 24455555555555556
Q ss_pred ccccccc----------CCCCCcCC-----CCCCCccEEEeCCCCCCchHHHHHhhC-CCCcCEEEEecCCCCcccccCC
Q 004729 455 RILNSSY----------CPNISLES-----VRLPMLTVLQLHSCEGITSASMAAISH-SYMLEVLELDNCNLLTSVSLEL 518 (733)
Q Consensus 455 ~~L~L~~----------~~~l~~~~-----~~l~~L~~L~L~~c~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~~~l 518 (733)
++|++.+ |..+.... ..+++|++|++ +|+.+++..+..++. +++|++|++.++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~--------- 414 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLD--------- 414 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECS---------
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecC---------
Confidence 6665553 33332211 13455555555 334455555555443 5555555554211
Q ss_pred CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChh
Q 004729 519 PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 598 (733)
Q Consensus 519 ~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~ 598 (733)
.|..+++..+.. .+.. .+..|++|+.|+++.+.- ......+..+...+++|+.|++++| .+++.
T Consensus 415 ---------~~n~l~~~p~~~-~~~~-~~~~~~~L~~L~L~~~~~----~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 478 (592)
T 3ogk_B 415 ---------REERITDLPLDN-GVRS-LLIGCKKLRRFAFYLRQG----GLTDLGLSYIGQYSPNVRWMLLGYV-GESDE 478 (592)
T ss_dssp ---------CCSCCSSCCCHH-HHHH-HHHHCTTCCEEEEECCGG----GCCHHHHHHHHHSCTTCCEEEECSC-CSSHH
T ss_pred ---------CCccccCchHHH-HHHH-HHHhCCCCCEEEEecCCC----CccHHHHHHHHHhCccceEeeccCC-CCCHH
Confidence 122232221000 0000 033455555555543210 0012334444455666666666653 45554
Q ss_pred hhhhhcCCCCCCCccEEEeecCCCCcccc-----ccCCCccEEeccccccccc-----cccccccccEEeccc
Q 004729 599 VCEVFSDGGGCPMLKSLVLDNCEGLTVVR-----FCSTSLVSLSLVGCRAITA-----LELKCPILEKVCLDG 661 (733)
Q Consensus 599 ~~~~~~~~~~l~~L~~L~L~~c~~L~~~~-----~~~~sL~~L~L~~c~~L~~-----l~~~~p~L~~L~L~~ 661 (733)
....+. ..+++|+.|+|++|. ++... ..+++|++|+|++|+ ++. +...+|.|....+..
T Consensus 479 ~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 479 GLMEFS--RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHH--TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHH--hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 333221 445666666666665 43321 145666666666654 332 344566666555544
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.8e-24 Score=247.01 Aligned_cols=360 Identities=14% Similarity=0.108 Sum_probs=211.1
Q ss_pred cccccccCCCccEEEeeccccch------------------hc---c--cCCCCcEEEEcCCchH----HHhhCCCCccE
Q 004729 352 VQEIPINHDQLRRLEITKCRVMR------------------VS---I--RCPQLEHLSLKRSNMA----QAVLNCPLLHL 404 (733)
Q Consensus 352 ~~~~~~~~~~L~~L~L~~~~~~~------------------i~---~--~~~~L~~L~L~~~~l~----~~~~~~~~L~~ 404 (733)
++.....+++|++|++++|.+.. ++ . .+++|++|++++|.+. ..+..+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 45555667777777777776655 33 2 5667777777776533 34566778888
Q ss_pred EEEecCCCCChHHHHHHHhc------CCCCcEEeccCCCCCChhHHHH--HHHhcccccccccccCCCC-Cc-CCCCCCC
Q 004729 405 LDIASCHKLSDAAIRLAATS------CPQLESLDMSNCSCVSDESLRE--IALSCANLRILNSSYCPNI-SL-ESVRLPM 474 (733)
Q Consensus 405 L~L~~c~~l~~~~l~~l~~~------~~~L~~L~L~~~~~l~~~~l~~--l~~~~~~L~~L~L~~~~~l-~~-~~~~l~~ 474 (733)
|+++++..++...++..+.. +++|+.|+++++. ++ .++. .+..+++|+.|+++++... .. ....+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCC
Confidence 88887543654233433333 3788888888776 44 2332 3446778888888776522 11 3335678
Q ss_pred ccEEEeCCCCCCchHHHHHhhCCCC-cCEEEEecCCCCcccccC-----CCCCcEEEeccccCCccccccccccceeecc
Q 004729 475 LTVLQLHSCEGITSASMAAISHSYM-LEVLELDNCNLLTSVSLE-----LPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 475 L~~L~L~~c~~l~~~~~~~l~~~~~-L~~L~L~~~~~l~~~~~~-----l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
|++|+++++ .+. .....+..+++ |++|++++|. ++.+|.. +++|+.|++.++.- +...-....-......
T Consensus 355 L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 355 LASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI-GSVDGKNFDPLDPTPF 430 (636)
T ss_dssp ESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCT-TTTTTCSSCTTCSSCC
T ss_pred CCEEECCCC-ccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcC-CCcchhhhcccccccc
Confidence 888888874 344 22234566777 8888888875 4455543 23677777766531 1110000000000111
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcC----CCCCCCccEEEeecCCCCc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD----GGGCPMLKSLVLDNCEGLT 624 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~----~~~l~~L~~L~L~~c~~L~ 624 (733)
.+++|+.|++++|.++.+.. .+...+++|+.|++++ +.++......+.. ...+++|+.|+|++| .++
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~-------~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 501 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPK-------ELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT 501 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCT-------HHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCC
T ss_pred cCCCCCEEECcCCccCcCCH-------HHHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCccEEECcCC-cCC
Confidence 55678888888888775421 2334577888888888 4665322222210 112337888888776 355
Q ss_pred cccc-----cCCCccEEeccccccccccc---cccccccEEeccccccc-----c-cc--cc-cccCCcEEEecCCCCcc
Q 004729 625 VVRF-----CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCDHI-----E-SA--SF-VPVALQSLNLGICPKLS 687 (733)
Q Consensus 625 ~~~~-----~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L~L~~c~~L-----~-~~--~~-~~~~L~~L~L~~c~~L~ 687 (733)
.++. .+++|+.|+++++ .++.++ ..+++|++|+|++++.+ . .. .+ ...+|++|++++|. ++
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~ 579 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IR 579 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CC
T ss_pred ccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CC
Confidence 5542 5678888888874 454444 26788888888653311 1 11 11 23478888888875 67
Q ss_pred ccccCc-ccccEEEecCCCCCCcc-CC-------C---CCCccEEeccCccccc
Q 004729 688 TLGIEA-LHMVVLELKGCGVLSDA-YI-------N---CPLLTSLDASFCRCVA 729 (733)
Q Consensus 688 ~l~~~~-~~L~~L~l~~c~~L~~~-~~-------~---~p~L~~L~l~~C~~L~ 729 (733)
.+|... .+|+.|++++|+....- .. . +...+..++.+|++|.
T Consensus 580 ~ip~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 580 KVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp BCCSCCCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred ccCHhHhCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 777533 46888888888654211 11 1 2233556788998875
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=6.7e-23 Score=235.05 Aligned_cols=407 Identities=16% Similarity=0.109 Sum_probs=253.1
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|+|++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 46888888874 34444444677888999999998888766566778889999999998887766666677888999999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCC----cEEec
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL----ESLDM 433 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L----~~L~L 433 (733)
+.+|.+..+. ..+++|++|+++++.+. ..+..+++|++|+++++ .+.... ...+..+++| +.|++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY-CTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEEC-GGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceec-HHHccchhccchhhhhccc
Confidence 9888776543 46788888888887543 44677888888888885 344321 1112233445 78888
Q ss_pred cCCCCCChhHHHHHHHhcccccccccccCCCC------------------------------------------------
Q 004729 434 SNCSCVSDESLREIALSCANLRILNSSYCPNI------------------------------------------------ 465 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l------------------------------------------------ 465 (733)
+++. ++......+ ...+|+.|++.++...
T Consensus 185 ~~n~-l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 185 SLNP-MNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp TTCC-CCEECTTTT--TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred CCCC-ceecCHHHh--ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 8776 333221111 1225666666543100
Q ss_pred -------------CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccC
Q 004729 466 -------------SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRK 531 (733)
Q Consensus 466 -------------~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~ 531 (733)
......+++|++|++.++. +.. ....+..+ +|++|++++|.. ..++. .+++|+.|.+.++..
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~-l~~~~~~~-~L~~L~l~~n~~-~~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IER-VKDFSYNF-GWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECS-CCBCCSCC-CCSEEEEESCBC-SSCCBCBCSSCCEEEEESCBS
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCcc-chh-hhhhhccC-CccEEeeccCcc-cccCcccccccCEEeCcCCcc
Confidence 0011123455555555431 221 11112233 555555555532 23332 245555555554432
Q ss_pred CccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCC
Q 004729 532 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM 611 (733)
Q Consensus 532 l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~ 611 (733)
.... ....+++|+.|++.+|.+..+.. .......+++|+.|++++| .++..... ...+++
T Consensus 338 ~~~~----------~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~~~~L~~L~l~~n-~l~~~~~~----~~~l~~ 397 (570)
T 2z63_A 338 GNAF----------SEVDLPSLEFLDLSRNGLSFKGC-----CSQSDFGTTSLKYLDLSFN-GVITMSSN----FLGLEQ 397 (570)
T ss_dssp CCBC----------CCCBCTTCCEEECCSSCCBEEEE-----EEHHHHTCSCCCEEECCSC-SEEEEEEE----EETCTT
T ss_pred cccc----------ccccCCCCCEEeCcCCccCcccc-----ccccccccCccCEEECCCC-cccccccc----ccccCC
Confidence 1111 12567889999999888775421 1122347889999999985 55443222 357889
Q ss_pred ccEEEeecCCCCccc-c----ccCCCccEEeccccccccccc---cccccccEEeccccccccc-c--cc-cccCCcEEE
Q 004729 612 LKSLVLDNCEGLTVV-R----FCSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCDHIES-A--SF-VPVALQSLN 679 (733)
Q Consensus 612 L~~L~L~~c~~L~~~-~----~~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L~L~~c~~L~~-~--~~-~~~~L~~L~ 679 (733)
|+.|++++|. +... + ..+++|+.|++++|.--...+ ..+++|++|++++|.-... . .+ ...+|++|+
T Consensus 398 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 398 LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp CCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 9999998874 3332 1 267889999999874322222 3689999999999753211 1 11 245899999
Q ss_pred ecCCCCccccccC----cccccEEEecCCCCCCcc----CCCCCCccEEeccCcc
Q 004729 680 LGICPKLSTLGIE----ALHMVVLELKGCGVLSDA----YINCPLLTSLDASFCR 726 (733)
Q Consensus 680 L~~c~~L~~l~~~----~~~L~~L~l~~c~~L~~~----~~~~p~L~~L~l~~C~ 726 (733)
+++|. ++.++.. ..+|++|++++|.. +.+ ..++++|+.|++++++
T Consensus 477 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 477 LSQCQ-LEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTSC-CCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-cccCChhhhhcccCCCEEeCCCCcC-CCCCHHHhhcccCCcEEEecCCc
Confidence 99984 7776432 23699999999854 333 2378999999998754
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.5e-23 Score=246.69 Aligned_cols=422 Identities=13% Similarity=0.094 Sum_probs=258.3
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEe-cCccCChH--------------------------------------
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTL-GRGQLGDA-------------------------------------- 327 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L-s~~~i~~~-------------------------------------- 327 (733)
.+++.|+|.+. .+....+..++.+++|++|+| ++|.+...
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccC-CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57899999884 455455577889999999999 66643221
Q ss_pred --HHHhccC-----------CCCCcEEEEec--CcCCcccccccccCCCccEEEeeccccch------------------
Q 004729 328 --FFHALAD-----------CSMLKSLNVND--ATLGNGVQEIPINHDQLRRLEITKCRVMR------------------ 374 (733)
Q Consensus 328 --~~~~L~~-----------~~~L~~L~L~~--~~l~~~~~~~~~~~~~L~~L~L~~~~~~~------------------ 374 (733)
....+.. ...++.+.+.. |.+.. ++..+..+++|+.|+|++|.+..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0000000 01111111111 22222 55556677888888888887665
Q ss_pred hcc-----cCCCCcEEEEcCCch----HHHhhCCCCccEEEEecCCCCChHHHHHHHh-------cCCCCcEEeccCCCC
Q 004729 375 VSI-----RCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAAT-------SCPQLESLDMSNCSC 438 (733)
Q Consensus 375 i~~-----~~~~L~~L~L~~~~l----~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~-------~~~~L~~L~L~~~~~ 438 (733)
++. .+++|+.|+|++|.+ ...+..+++|+.|+++++..++...++..+. .+++|+.|+++++.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~- 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN- 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence 442 567888888887753 3456778889999998864366523333233 34589999998877
Q ss_pred CChhHHHH--HHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCCCCCchHHHHHhhCCCC-cCEEEEecCCCCccc
Q 004729 439 VSDESLRE--IALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYM-LEVLELDNCNLLTSV 514 (733)
Q Consensus 439 l~~~~l~~--l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~-L~~L~L~~~~~l~~~ 514 (733)
++ .++. .+..+++|+.|+++++..... ....+++|+.|+++++ .+. .....+..+++ |+.|+|++|. +..+
T Consensus 560 L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~l 634 (876)
T 4ecn_A 560 LE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNK-LKYI 634 (876)
T ss_dssp CC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSC-CCSC
T ss_pred CC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCC-CCcC
Confidence 55 2333 445788899999988763222 3447888999999884 455 33344667777 9999999885 4466
Q ss_pred ccCC-----CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEee
Q 004729 515 SLEL-----PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDL 589 (733)
Q Consensus 515 ~~~l-----~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~L 589 (733)
|..+ ++|+.|.+.++.-..... .. ...+....+++|+.|++++|.+..+. ..+...+++|+.|+|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip--~l-~~~l~~~~~~~L~~L~Ls~N~L~~lp-------~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGR--NI-SCSMDDYKGINASTVTLSYNEIQKFP-------TELFATGSPISTIIL 704 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSS--SC-SSCTTTCCCCCEEEEECCSSCCCSCC-------HHHHHTTCCCSEEEC
T ss_pred chhhhccccCCCCEEECcCCcCCCccc--cc-hhhhccccCCCcCEEEccCCcCCccC-------HHHHccCCCCCEEEC
Confidence 6432 347788877653211110 00 00111124457888888888887542 123446788999999
Q ss_pred cCCCCCChhhhhhhcC----CCCCCCccEEEeecCCCCccccc-----cCCCccEEeccccccccccc---cccccccEE
Q 004729 590 TDCESLTNSVCEVFSD----GGGCPMLKSLVLDNCEGLTVVRF-----CSTSLVSLSLVGCRAITALE---LKCPILEKV 657 (733)
Q Consensus 590 s~C~~lt~~~~~~~~~----~~~l~~L~~L~L~~c~~L~~~~~-----~~~sL~~L~L~~c~~L~~l~---~~~p~L~~L 657 (733)
++| .++......+.. ...+++|+.|+|++| .++.++. .+++|+.|+|+++ .++.++ ..+++|+.|
T Consensus 705 s~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 705 SNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAF 781 (876)
T ss_dssp CSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEE
T ss_pred CCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEE
Confidence 884 666332222211 123448999999887 4555543 4678899999885 455554 367889999
Q ss_pred eccccccc-----cc-c--cc-cccCCcEEEecCCCCccccccCc-ccccEEEecCCCCCCccCC--------CC---CC
Q 004729 658 CLDGCDHI-----ES-A--SF-VPVALQSLNLGICPKLSTLGIEA-LHMVVLELKGCGVLSDAYI--------NC---PL 716 (733)
Q Consensus 658 ~L~~c~~L-----~~-~--~~-~~~~L~~L~L~~c~~L~~l~~~~-~~L~~L~l~~c~~L~~~~~--------~~---p~ 716 (733)
+|++++.+ .. . .+ ...+|++|+|++|. +..+|... .+|+.|+|++|+...-... .. ..
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~ 860 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEEC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhcCCCCEEECCCCCCCccChHHccccccchheeecC
Confidence 98774322 11 1 11 23578999998885 68877643 3688999999876431111 11 11
Q ss_pred ccEEeccCcccccc
Q 004729 717 LTSLDASFCRCVAS 730 (733)
Q Consensus 717 L~~L~l~~C~~L~~ 730 (733)
-+..++.+|++|.-
T Consensus 861 n~~~~I~gC~~L~l 874 (876)
T 4ecn_A 861 DKTQDIRGCDALGI 874 (876)
T ss_dssp CTTSEEESCGGGCC
T ss_pred CCccccCCCCCccc
Confidence 12346788988753
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=243.97 Aligned_cols=422 Identities=19% Similarity=0.145 Sum_probs=223.1
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCccccc--ccccCCCc
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE--IPINHDQL 362 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~--~~~~~~~L 362 (733)
.+++|+.|+++++..........+..+++|++|+|++|.+....+..+..+++|++|+|++|.+....+. ....+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 4555666666654332222234455666666666666666554455566666666666666655543222 24456666
Q ss_pred cEEEeeccccchh-----cccCCCCcEEEEcCCchHH----HhhCC--CCccEEEEecCCCCChHHHHHHHhcCC-----
Q 004729 363 RRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMAQ----AVLNC--PLLHLLDIASCHKLSDAAIRLAATSCP----- 426 (733)
Q Consensus 363 ~~L~L~~~~~~~i-----~~~~~~L~~L~L~~~~l~~----~~~~~--~~L~~L~L~~c~~l~~~~l~~l~~~~~----- 426 (733)
++|++++|.+..+ ...+++|+.|++++|.+.. .+..+ ++|+.|+++.+. +.... ...+..++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~-l~~~~-~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS-LYSRV-SVDWGKCMNPFRN 203 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB-SCCCC-CCCCCSSSCTTTT
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc-ccccc-ccchhhcCCcccc
Confidence 6666666654432 2345666666666654321 11122 455555555532 21100 00011122
Q ss_pred -CCcEEeccCCCCCChhHHHHHHH-------------------------------------hcccccccccccCCCCC--
Q 004729 427 -QLESLDMSNCSCVSDESLREIAL-------------------------------------SCANLRILNSSYCPNIS-- 466 (733)
Q Consensus 427 -~L~~L~L~~~~~l~~~~l~~l~~-------------------------------------~~~~L~~L~L~~~~~l~-- 466 (733)
.|+.|+++++. ++......+.. ..++|+.|+++++....
T Consensus 204 ~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 204 MVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp CCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred CceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 37777777663 22111111100 12456666666554221
Q ss_pred -cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCcccccccccc
Q 004729 467 -LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMML 542 (733)
Q Consensus 467 -~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L 542 (733)
.....+++|+.|++.+ +.+.......+..+++|++|++++|......+. .+++|+.|.+.++ .+..+.-
T Consensus 283 ~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~----- 355 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQD----- 355 (844)
T ss_dssp SCCSSSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCS-----
T ss_pred hhhhhcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccCh-----
Confidence 2223566777777776 345554444566677777777777643222121 2566666666543 1221110
Q ss_pred ceeecccCcCCceeeeccCcccccccc--------ccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccE
Q 004729 543 SSIMVSNCAALHRINITSNSLQKLSLQ--------KQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKS 614 (733)
Q Consensus 543 ~~l~l~~c~~L~~L~l~~n~L~~l~~~--------~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~ 614 (733)
-.+..+++|+.|++++|.++.+... ....+..+.....+++.|++++ +.+++.....+ ...+++|+.
T Consensus 356 --~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~-N~l~~l~~~~~--~~~l~~L~~ 430 (844)
T 3j0a_A 356 --QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE-NRLENLDILYF--LLRVPHLQI 430 (844)
T ss_dssp --SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS-CCCCSSTTHHH--HTTCTTCCE
T ss_pred --hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc-CccccCchhhh--hhcCCccce
Confidence 0244556666666666655543210 0000001111234556666665 34443221111 246888899
Q ss_pred EEeecCCCCccc-----cccCCCccEEecccccccccc---------ccccccccEEeccccccccccc---c-cccCCc
Q 004729 615 LVLDNCEGLTVV-----RFCSTSLVSLSLVGCRAITAL---------ELKCPILEKVCLDGCDHIESAS---F-VPVALQ 676 (733)
Q Consensus 615 L~L~~c~~L~~~-----~~~~~sL~~L~L~~c~~L~~l---------~~~~p~L~~L~L~~c~~L~~~~---~-~~~~L~ 676 (733)
|+|+++. ++.. ...+++|+.|+++++ .++.+ ...+++|++|+|+++ .++... + ...+|+
T Consensus 431 L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 431 LILNQNR-FSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALR 507 (844)
T ss_dssp EEEESCC-CCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCS
T ss_pred eeCCCCc-ccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhh
Confidence 9988873 4432 225678888888884 33321 235788889998884 444422 2 245889
Q ss_pred EEEecCCCCccccccCc--ccccEEEecCCCCCCccCCCCCCccEEeccCc
Q 004729 677 SLNLGICPKLSTLGIEA--LHMVVLELKGCGVLSDAYINCPLLTSLDASFC 725 (733)
Q Consensus 677 ~L~L~~c~~L~~l~~~~--~~L~~L~l~~c~~L~~~~~~~p~L~~L~l~~C 725 (733)
+|+|+++ +|+.++... .+|+.|+++++..-......+++|+.|++++.
T Consensus 508 ~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~N 557 (844)
T 3j0a_A 508 GLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHN 557 (844)
T ss_dssp EEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEE
T ss_pred eeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCC
Confidence 9999888 588776544 36888999887665544446778888888753
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=238.18 Aligned_cols=409 Identities=17% Similarity=0.128 Sum_probs=252.6
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHH-HHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAF-FHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~-~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
.++++.|++++. .+.......+..+++|++|+|++|.....+ +..+.++++|++|+|++|.+....+..+..+++|++
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 357888998874 455444556778889999999888444333 566788899999999998888776777788899999
Q ss_pred EEeeccccch-h-----cccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecCCCCCh---HHHHHHHhcCCCCcE
Q 004729 365 LEITKCRVMR-V-----SIRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSD---AAIRLAATSCPQLES 430 (733)
Q Consensus 365 L~L~~~~~~~-i-----~~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~---~~l~~l~~~~~~L~~ 430 (733)
|++++|.+.. + ...+++|+.|+|++|.+. ..+..+++|++|+++++ .+.. ..+..+.. ++|+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~--~~L~~ 178 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQG--KTLSF 178 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHH--CSSCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccC--Cccce
Confidence 9999887653 1 356888999999887654 34678888999998885 3332 22222211 68888
Q ss_pred EeccCCCCCChhHHHHHHHhcc------cccccccccCCCCC---cC---------------------------------
Q 004729 431 LDMSNCSCVSDESLREIALSCA------NLRILNSSYCPNIS---LE--------------------------------- 468 (733)
Q Consensus 431 L~L~~~~~l~~~~l~~l~~~~~------~L~~L~L~~~~~l~---~~--------------------------------- 468 (733)
|+++.+. +.......+ ..++ .|+.|+++++.... ..
T Consensus 179 L~L~~n~-l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 179 FSLAANS-LYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CEECCSB-SCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred EECCCCc-cccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 8888776 332111111 0222 38888888763110 00
Q ss_pred -----CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCcccccccc
Q 004729 469 -----SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAM 540 (733)
Q Consensus 469 -----~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~ 540 (733)
....++|++|+++++ .+.......+..+++|+.|+|++|......+. .+++|+.|.+.++. ++.+.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---- 330 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELY---- 330 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCC----
T ss_pred hhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccC----
Confidence 001245666666663 34443334455566666666666643222121 24555666555442 11110
Q ss_pred ccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecC
Q 004729 541 MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 541 ~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
.-.+..+++|+.|++.+|.+..+.... +..+++|+.|++++| .++. + ..+++|+.|.++++
T Consensus 331 ---~~~~~~l~~L~~L~L~~N~i~~~~~~~-------~~~l~~L~~L~Ls~N-~l~~-----i---~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 331 ---SSNFYGLPKVAYIDLQKNHIAIIQDQT-------FKFLEKLQTLDLRDN-ALTT-----I---HFIPSIPDIFLSGN 391 (844)
T ss_dssp ---SCSCSSCTTCCEEECCSCCCCCCCSSC-------SCSCCCCCEEEEETC-CSCC-----C---SSCCSCSEEEEESC
T ss_pred ---HHHhcCCCCCCEEECCCCCCCccChhh-------hcCCCCCCEEECCCC-CCCc-----c---cCCCCcchhccCCC
Confidence 012566777777777777776553221 124667788888774 4442 1 33677788887776
Q ss_pred CCCccccccCCCccEEeccccccccccc-----cccccccEEecccccccccc-----cccccCCcEEEecCCCCccccc
Q 004729 621 EGLTVVRFCSTSLVSLSLVGCRAITALE-----LKCPILEKVCLDGCDHIESA-----SFVPVALQSLNLGICPKLSTLG 690 (733)
Q Consensus 621 ~~L~~~~~~~~sL~~L~L~~c~~L~~l~-----~~~p~L~~L~L~~c~~L~~~-----~~~~~~L~~L~L~~c~~L~~l~ 690 (733)
.++.++....+++.|++++ +.++.+. ..+|+|++|+++++ .++.. .....+|++|+++++. ++.++
T Consensus 392 -~l~~l~~~~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~ 467 (844)
T 3j0a_A 392 -KLVTLPKINLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAW 467 (844)
T ss_dssp -CCCCCCCCCTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSC
T ss_pred -Ccccccccccccceeeccc-CccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc-ccccc
Confidence 4566666677788888877 3455443 26889999999884 34421 1124588899988874 54332
Q ss_pred c---------CcccccEEEecCCCCC---CccCCCCCCccEEeccCcccccc
Q 004729 691 I---------EALHMVVLELKGCGVL---SDAYINCPLLTSLDASFCRCVAS 730 (733)
Q Consensus 691 ~---------~~~~L~~L~l~~c~~L---~~~~~~~p~L~~L~l~~C~~L~~ 730 (733)
. ...+|+.|++++|..- +....++++|+.|+++++. |+.
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 518 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTV 518 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-CSS
T ss_pred ccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC-CCc
Confidence 1 1235888888886432 2223378999999999873 443
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=228.12 Aligned_cols=414 Identities=16% Similarity=0.112 Sum_probs=283.3
Q ss_pred CCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEE
Q 004729 262 DFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSL 341 (733)
Q Consensus 262 ~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L 341 (733)
...+.+++....+.... ...+..+++++.|+++++ .+.......+..+++|++|+|++|.+....+..+..+++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccC-hhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 34567777664433110 113456889999999985 3444445567889999999999999987666788899999999
Q ss_pred EEecCcCCcccccccccCCCccEEEeeccccch-----hcccCCCCcEEEEcCCchHH----HhhCCCCc----cEEEEe
Q 004729 342 NVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-----VSIRCPQLEHLSLKRSNMAQ----AVLNCPLL----HLLDIA 408 (733)
Q Consensus 342 ~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~-----i~~~~~~L~~L~L~~~~l~~----~~~~~~~L----~~L~L~ 408 (733)
++++|.+..........+++|++|++++|.+.. ....+++|+.|+++++.+.. .+..+++| +.|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999998776544446789999999999998654 23568999999999987653 24455666 889998
Q ss_pred cCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHH-------------------------------------------
Q 004729 409 SCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR------------------------------------------- 445 (733)
Q Consensus 409 ~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~------------------------------------------- 445 (733)
++ .+..... ..+.. .+|+.|+++++.. ....+.
T Consensus 186 ~n-~l~~~~~-~~~~~-~~L~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 186 LN-PMNFIQP-GAFKE-IRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp TC-CCCEECT-TTTTT-CEEEEEEEESCCS-CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred CC-CceecCH-HHhcc-CcceeEecccccc-cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 85 3443221 12222 3788888877531 111111
Q ss_pred --------------HHHHhcccccccccccCC--CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 446 --------------EIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 446 --------------~l~~~~~~L~~L~L~~~~--~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
..+..+++|++|++.++. .++.....+ +|++|++.+|. +.... ...+++|++|++.+|.
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~---~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFP---TLKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCC---BCBCSSCCEEEEESCB
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccC---cccccccCEEeCcCCc
Confidence 112346788888888775 333344456 99999999964 44221 1468899999999987
Q ss_pred CCcccc-cCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEe
Q 004729 510 LLTSVS-LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVD 588 (733)
Q Consensus 510 ~l~~~~-~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~ 588 (733)
.....+ ..+++|+.|++.++. ++..... ...+..+++|+.|++.+|.+..+... ...+++|+.|+
T Consensus 337 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~l~~L~~L~ 402 (570)
T 2z63_A 337 GGNAFSEVDLPSLEFLDLSRNG-LSFKGCC-----SQSDFGTTSLKYLDLSFNGVITMSSN--------FLGLEQLEHLD 402 (570)
T ss_dssp SCCBCCCCBCTTCCEEECCSSC-CBEEEEE-----EHHHHTCSCCCEEECCSCSEEEEEEE--------EETCTTCCEEE
T ss_pred cccccccccCCCCCEEeCcCCc-cCccccc-----cccccccCccCEEECCCCcccccccc--------ccccCCCCEEE
Confidence 555444 347889999887763 2222100 11257789999999999988775421 23678999999
Q ss_pred ecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc-c---ccCCCccEEeccccccc-cccc---cccccccEEecc
Q 004729 589 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV-R---FCSTSLVSLSLVGCRAI-TALE---LKCPILEKVCLD 660 (733)
Q Consensus 589 Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~-~---~~~~sL~~L~L~~c~~L-~~l~---~~~p~L~~L~L~ 660 (733)
+++| .++.... ......+++|+.|++++|. +... + ..+++|+.|++++|.-. ..++ ..+++|++|+++
T Consensus 403 l~~n-~l~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 403 FQHS-NLKQMSE--FSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp CTTS-EEESCTT--SCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred ccCC-ccccccc--hhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 9995 4543321 1123678999999999985 4333 2 25789999999997532 1232 478999999999
Q ss_pred cccccccc---cc-cccCCcEEEecCCCCccccccCc----ccccEEEecCCCC
Q 004729 661 GCDHIESA---SF-VPVALQSLNLGICPKLSTLGIEA----LHMVVLELKGCGV 706 (733)
Q Consensus 661 ~c~~L~~~---~~-~~~~L~~L~L~~c~~L~~l~~~~----~~L~~L~l~~c~~ 706 (733)
+|. ++.. .+ ...+|++|++++| +++.++... .+|+.|++++++.
T Consensus 479 ~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 479 QCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 964 4433 22 2358999999998 588876443 3689999998764
No 21
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=7.9e-22 Score=227.31 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred HhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 422 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
...+++|++|++++|. +++..+..+...+++|++|.+.+|
T Consensus 285 ~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 3344555555555554 444444444444555555555544
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=3e-21 Score=218.99 Aligned_cols=406 Identities=14% Similarity=0.100 Sum_probs=219.0
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|+++++ .+.......+..+++|++|+|++|.++...+..+..+++|++|+|++|.+. .++.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 45666666653 233333445566666666666666666544555666666666666666655 23322 566666666
Q ss_pred eeccccch-----hcccCCCCcEEEEcCCchHH-HhhCCCCc--cEEEEecCCCC-ChHHHHHHHhcCCCCc----EEec
Q 004729 367 ITKCRVMR-----VSIRCPQLEHLSLKRSNMAQ-AVLNCPLL--HLLDIASCHKL-SDAAIRLAATSCPQLE----SLDM 433 (733)
Q Consensus 367 L~~~~~~~-----i~~~~~~L~~L~L~~~~l~~-~~~~~~~L--~~L~L~~c~~l-~~~~l~~l~~~~~~L~----~L~L 433 (733)
+++|.+.. ....+++|+.|+++++.+.. .+..+++| ++|+++++.-. .... ...+..|+ .+++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~----~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED----PEGLQDFNTESLHIVF 172 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCC----TTTTTTCCEEEEEEEC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccc----cccccccccceEEEEe
Confidence 66665443 12345566666666555432 23444555 66666654210 1000 01122222 2333
Q ss_pred cCCCCCChhHHHHHHHhcccccccccccCCC---------CCcCCCCCCCccEEEeCCCCCCchHHHHHhh---CCCCcC
Q 004729 434 SNCSCVSDESLREIALSCANLRILNSSYCPN---------ISLESVRLPMLTVLQLHSCEGITSASMAAIS---HSYMLE 501 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~---------l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~---~~~~L~ 501 (733)
.++. +...........+++|+.|+++++.. .......+++|+.|++.++ .+.+..+..+. ..++|+
T Consensus 173 ~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 173 PTNK-EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CSSS-CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCS
T ss_pred ccCc-chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc-ccCHHHHHHHHHHhhhCccc
Confidence 3332 11111111112456666666665430 0012235667777777763 34433332222 245777
Q ss_pred EEEEecCCCCcccccCC--------CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCcccccccccccc
Q 004729 502 VLELDNCNLLTSVSLEL--------PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQEN 573 (733)
Q Consensus 502 ~L~L~~~~~l~~~~~~l--------~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~ 573 (733)
+|++++|.....+|..+ ++|+.+.+.++.- . +....+. .+....+|+.|++.+|.+..+..
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~--~p~~~~~--~~~~~~~L~~L~l~~n~l~~~~~----- 319 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G--FPQSYIY--EIFSNMNIKNFTVSGTRMVHMLC----- 319 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C--SCTHHHH--HHHHTCCCSEEEEESSCCCCCCC-----
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--e--cchhhhh--cccccCceeEEEcCCCccccccc-----
Confidence 78777774332444332 3333333333211 0 0000000 00111457888888887765432
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc------ccCCCccEEeccccccccc-
Q 004729 574 LTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR------FCSTSLVSLSLVGCRAITA- 646 (733)
Q Consensus 574 L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~------~~~~sL~~L~L~~c~~L~~- 646 (733)
...+++|+.|++++| .+++..+..+ +.+++|+.|++++|. ++.++ ..+++|+.|+++++. +..
T Consensus 320 ----~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 389 (520)
T 2z7x_B 320 ----PSKISPFLHLDFSNN-LLTDTVFENC---GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYD 389 (520)
T ss_dssp ----CSSCCCCCEEECCSS-CCCTTTTTTC---CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCC
T ss_pred ----hhhCCcccEEEeECC-ccChhhhhhh---ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcc
Confidence 125678888888884 6665443333 678888888888874 54321 267888888888853 444
Q ss_pred cc----cccccccEEeccccccccccc--ccccCCcEEEecCCCCccccccC---cccccEEEecCCCCCCccCC----C
Q 004729 647 LE----LKCPILEKVCLDGCDHIESAS--FVPVALQSLNLGICPKLSTLGIE---ALHMVVLELKGCGVLSDAYI----N 713 (733)
Q Consensus 647 l~----~~~p~L~~L~L~~c~~L~~~~--~~~~~L~~L~L~~c~~L~~l~~~---~~~L~~L~l~~c~~L~~~~~----~ 713 (733)
++ ..+++|++|++++|. ++... ..+.+|++|++++| +++.+|.. ..+|++|++++|.. +.+.. .
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~ 466 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDR 466 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSC-CCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTT
T ss_pred cccchhccCccCCEEECcCCC-CCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcC-CccCHHHhcc
Confidence 44 256888888888854 43221 12358889999888 47777643 23688899988753 33332 6
Q ss_pred CCCccEEeccCcc
Q 004729 714 CPLLTSLDASFCR 726 (733)
Q Consensus 714 ~p~L~~L~l~~C~ 726 (733)
+++|+.|++++++
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 7889999998765
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.9e-20 Score=212.40 Aligned_cols=397 Identities=16% Similarity=0.169 Sum_probs=267.7
Q ss_pred CCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEE
Q 004729 262 DFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSL 341 (733)
Q Consensus 262 ~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L 341 (733)
...+.+++....+... ....+..+++++.|++++. .+....+..++.+++|++|+|++|.++. ++.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISEL-WTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEE
T ss_pred ccccEEECCCCccccc-ChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEE
Confidence 3456777776554321 1234567899999999984 4555555678899999999999999883 3333 79999999
Q ss_pred EEecCcCCc-ccccccccCCCccEEEeeccccch-hcccCCCC--cEEEEcCCch--H----HHh---------------
Q 004729 342 NVNDATLGN-GVQEIPINHDQLRRLEITKCRVMR-VSIRCPQL--EHLSLKRSNM--A----QAV--------------- 396 (733)
Q Consensus 342 ~L~~~~l~~-~~~~~~~~~~~L~~L~L~~~~~~~-i~~~~~~L--~~L~L~~~~l--~----~~~--------------- 396 (733)
++++|.+.. .++.....+++|++|++++|.+.. ....+++| +.|+++++.+ . ..+
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 999999876 456677899999999999998753 33567788 9999998876 1 111
Q ss_pred -----------hCCCCccEEEEecCCC---CC--hHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHH--hcccccccc
Q 004729 397 -----------LNCPLLHLLDIASCHK---LS--DAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL--SCANLRILN 458 (733)
Q Consensus 397 -----------~~~~~L~~L~L~~c~~---l~--~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~--~~~~L~~L~ 458 (733)
..+++|+.|+++++.. .. ...++ .+..+++|+.|++.++. ++...+..+.. .+++|++|+
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEE
Confidence 2367788888887531 10 11122 45678999999999876 66665555543 356999999
Q ss_pred cccCC---CCCcCC-----CCCCCccEEEeCCCCC-CchHHHHHhhCCCCcCEEEEecCCCCcccc--cCCCCCcEEEec
Q 004729 459 SSYCP---NISLES-----VRLPMLTVLQLHSCEG-ITSASMAAISHSYMLEVLELDNCNLLTSVS--LELPRLQNIRLV 527 (733)
Q Consensus 459 L~~~~---~l~~~~-----~~l~~L~~L~L~~c~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~--~~l~~L~~L~L~ 527 (733)
++++. .++... ..+++|+.+++.++.. +....+..+....+|+.|++++|.. ...+ ..+++|+.|++.
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECC
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc-ccccchhhCCcccEEEeE
Confidence 99876 344444 6788899999988542 1112222222236799999999864 4333 457888888887
Q ss_pred cccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCC
Q 004729 528 HCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGG 607 (733)
Q Consensus 528 ~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~ 607 (733)
++. ++..... .+..+++|+.|++.+|.++.+. .+......+++|+.|++++ +.++...... ...
T Consensus 333 ~n~-l~~~~~~-------~~~~l~~L~~L~L~~N~l~~l~-----~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~--~~~ 396 (520)
T 2z7x_B 333 NNL-LTDTVFE-------NCGHLTELETLILQMNQLKELS-----KIAEMTTQMKSLQQLDISQ-NSVSYDEKKG--DCS 396 (520)
T ss_dssp SSC-CCTTTTT-------TCCCCSSCCEEECCSSCCCBHH-----HHHHHHTTCTTCCEEECCS-SCCBCCGGGC--SCC
T ss_pred CCc-cChhhhh-------hhccCCCCCEEEccCCccCccc-----cchHHHhhCCCCCEEECCC-CcCCcccccc--hhc
Confidence 763 3321111 2577889999999999887541 2333455788999999998 4666522221 135
Q ss_pred CCCCccEEEeecCCCCccccccC-CCccEEecccccccccccc---ccccccEEeccccccccccc---cc-ccCCcEEE
Q 004729 608 GCPMLKSLVLDNCEGLTVVRFCS-TSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDHIESAS---FV-PVALQSLN 679 (733)
Q Consensus 608 ~l~~L~~L~L~~c~~L~~~~~~~-~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~L~~~~---~~-~~~L~~L~ 679 (733)
.+++|+.|++++|.-...++... ++|+.|++++| .++.++. .+++|++|+++++ .++.+. +. ..+|++|+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 67899999998885333343333 68899998885 4665542 6788888888884 444432 11 23566666
Q ss_pred ecCCC
Q 004729 680 LGICP 684 (733)
Q Consensus 680 L~~c~ 684 (733)
+++++
T Consensus 475 l~~N~ 479 (520)
T 2z7x_B 475 LHTNP 479 (520)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 66654
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=5.3e-22 Score=220.79 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=58.6
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCC-------------CcEEEEecCcCCcccc
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSM-------------LKSLNVNDATLGNGVQ 353 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~-------------L~~L~L~~~~l~~~~~ 353 (733)
..++.|.+++ ..+ ..++..++.+++|++|++++|.+....+..++.+.+ |++|+++++.+.. ++
T Consensus 11 ~~L~~L~l~~-n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHS-SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhccc-Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 3455555555 233 334445666666666666665554444444444443 3556665555432 11
Q ss_pred cccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEec
Q 004729 354 EIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDM 433 (733)
Q Consensus 354 ~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L 433 (733)
...++|++|++++|.+..++..+++|+.|++++|.+..+....++|++|+++++ .+.. ++ .+..+++|++|++
T Consensus 88 ---~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n-~l~~--lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 88 ---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEK--LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp ---SCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSS--CC-CCTTCTTCCEEEC
T ss_pred ---CCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCC-CCCC--Cc-ccCCCCCCCEEEC
Confidence 123556666666655555554455556666555554433222245555555553 2332 11 1344555555555
Q ss_pred cCCC
Q 004729 434 SNCS 437 (733)
Q Consensus 434 ~~~~ 437 (733)
+++.
T Consensus 161 ~~N~ 164 (454)
T 1jl5_A 161 DNNS 164 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5543
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=6.2e-21 Score=226.18 Aligned_cols=392 Identities=14% Similarity=0.133 Sum_probs=265.2
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEE-ecCcCCccccccc----------------------------------
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNV-NDATLGNGVQEIP---------------------------------- 356 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L-~~~~l~~~~~~~~---------------------------------- 356 (733)
.+++.|+|+++.+...++..++++++|++|+| ++|.+....+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47899999999998888899999999999999 7765332200000
Q ss_pred -----------------ccCCCccEEEeec--cccchh---cccCCCCcEEEEcCCchHH------------------H-
Q 004729 357 -----------------INHDQLRRLEITK--CRVMRV---SIRCPQLEHLSLKRSNMAQ------------------A- 395 (733)
Q Consensus 357 -----------------~~~~~L~~L~L~~--~~~~~i---~~~~~~L~~L~L~~~~l~~------------------~- 395 (733)
.....++.+.+.. |.+..+ ...+++|+.|+|++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0111122221111 222223 3578999999999987765 2
Q ss_pred ----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcc-------cccccccccCCC
Q 004729 396 ----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA-------NLRILNSSYCPN 464 (733)
Q Consensus 396 ----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~-------~L~~L~L~~~~~ 464 (733)
+..+++|++|++++|..... ++..+..+++|+.|+++++..++...++.-+..++ +|+.|+++++..
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred hhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 23789999999999753332 33556789999999999986566523333333444 999999999874
Q ss_pred C--Cc--CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC---CCC-CcEEEeccccCCcccc
Q 004729 465 I--SL--ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPR-LQNIRLVHCRKFADLN 536 (733)
Q Consensus 465 l--~~--~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~---l~~-L~~L~L~~c~~l~~l~ 536 (733)
. +. ....+++|+.|+++++ .+.... .++.+++|+.|++++|.. ..+|.. +++ |+.|.+.++. ++.+.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp--~~~~L~~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHN-KVRHLE--AFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTS-CCCBCC--CCCTTSEESEEECCSSCC-SCCCTTSCEECTTCCEEECCSSC-CCSCC
T ss_pred CccCChhhhhcCCCCCEEECCCC-Ccccch--hhcCCCcceEEECcCCcc-ccchHHHhhccccCCEEECcCCC-CCcCc
Confidence 3 33 3458999999999995 466333 778899999999999864 466643 466 8899888764 33221
Q ss_pred ccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEE
Q 004729 537 LRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLV 616 (733)
Q Consensus 537 l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~ 616 (733)
. .+.....++|+.|++++|.+......-...+. ...+++|+.|++++| .++......+ ..+++|+.|+
T Consensus 636 --~----~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~--~~~~~~L~~L~Ls~N-~L~~lp~~~~---~~l~~L~~L~ 703 (876)
T 4ecn_A 636 --N----IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD--DYKGINASTVTLSYN-EIQKFPTELF---ATGSPISTII 703 (876)
T ss_dssp --S----CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT--TCCCCCEEEEECCSS-CCCSCCHHHH---HTTCCCSEEE
T ss_pred --h----hhhccccCCCCEEECcCCcCCCccccchhhhc--cccCCCcCEEEccCC-cCCccCHHHH---ccCCCCCEEE
Confidence 1 11122334599999999998764211110111 013569999999995 7764433333 3689999999
Q ss_pred eecCCCCcccccc-----------CCCccEEecccccccccccc-----ccccccEEeccccccccccc---ccccCCcE
Q 004729 617 LDNCEGLTVVRFC-----------STSLVSLSLVGCRAITALEL-----KCPILEKVCLDGCDHIESAS---FVPVALQS 677 (733)
Q Consensus 617 L~~c~~L~~~~~~-----------~~sL~~L~L~~c~~L~~l~~-----~~p~L~~L~L~~c~~L~~~~---~~~~~L~~ 677 (733)
|++| .++.++.. +++|+.|+|++| .|+.++. .+++|+.|+|+++ .++.+. ....+|+.
T Consensus 704 Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 704 LSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKA 780 (876)
T ss_dssp CCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCE
T ss_pred CCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCE
Confidence 9997 56666541 128999999996 5666652 6799999999994 444422 23458999
Q ss_pred EEecCCC------Ccccccc---CcccccEEEecCCCCCCccCC-CCCCccEEeccCcc
Q 004729 678 LNLGICP------KLSTLGI---EALHMVVLELKGCGVLSDAYI-NCPLLTSLDASFCR 726 (733)
Q Consensus 678 L~L~~c~------~L~~l~~---~~~~L~~L~l~~c~~L~~~~~-~~p~L~~L~l~~C~ 726 (733)
|+|++++ -...+|. ...+|+.|+|++|.. ..+.. -+++|+.|++++|+
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCT
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCC
Confidence 9998743 2233332 124699999999876 65555 34799999999997
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=5.6e-21 Score=221.85 Aligned_cols=331 Identities=14% Similarity=0.171 Sum_probs=228.1
Q ss_pred cccCCCCcEEEEcCCchHH------------------H---hh--CCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEe
Q 004729 376 SIRCPQLEHLSLKRSNMAQ------------------A---VL--NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 432 (733)
Q Consensus 376 ~~~~~~L~~L~L~~~~l~~------------------~---~~--~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~ 432 (733)
...+++|+.|+|+++.+.. + +. .+++|++|++++|..... ++..+.++++|+.|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEE
Confidence 4578999999999987665 2 34 789999999999753332 334567889999999
Q ss_pred ccCCCCCChhHHHHHHHh------cccccccccccCCCC--Cc--CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCE
Q 004729 433 MSNCSCVSDESLREIALS------CANLRILNSSYCPNI--SL--ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEV 502 (733)
Q Consensus 433 L~~~~~l~~~~l~~l~~~------~~~L~~L~L~~~~~l--~~--~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~ 502 (733)
++++..++...++.-... +++|++|+++++... +. ....+++|++|+++++ .+..... .++.+++|++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCCCCCE
Confidence 999875665233333334 399999999988733 33 3458899999999995 4652222 6778899999
Q ss_pred EEEecCCCCcccccC---CCC-CcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHH
Q 004729 503 LELDNCNLLTSVSLE---LPR-LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLA 578 (733)
Q Consensus 503 L~L~~~~~l~~~~~~---l~~-L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~ 578 (733)
|++++|. +..+|.. +++ |+.|.+.++. ++.+. . .+....+++|+.|++++|.+....+........-.
T Consensus 358 L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp--~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 358 LNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIP--N----IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCC--S----CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred EECCCCc-cccccHhhhhhcccCcEEEccCCc-Ccccc--h----hhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 9999984 4566654 466 8888887764 33221 1 11122345899999999999775432221000001
Q ss_pred hcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccccc----C-------CCccEEecccccccccc
Q 004729 579 LQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFC----S-------TSLVSLSLVGCRAITAL 647 (733)
Q Consensus 579 ~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~----~-------~sL~~L~L~~c~~L~~l 647 (733)
..+++|+.|++++| .++......+ ..+++|+.|+|+++ .++.++.. . ++|+.|+++++ .++.+
T Consensus 430 ~~~~~L~~L~Ls~N-~l~~lp~~~~---~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l 503 (636)
T 4eco_A 430 FKGINVSSINLSNN-QISKFPKELF---STGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL 503 (636)
T ss_dssp CCCCCEEEEECCSS-CCCSCCTHHH---HTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC
T ss_pred ccCCCCCEEECcCC-ccCcCCHHHH---ccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCcc
Confidence 14569999999994 7774433333 35899999999997 46666541 1 28999999995 46665
Q ss_pred cc-----ccccccEEeccccccccccc---ccccCCcEEEecCCC------CccccccC---cccccEEEecCCCCCCcc
Q 004729 648 EL-----KCPILEKVCLDGCDHIESAS---FVPVALQSLNLGICP------KLSTLGIE---ALHMVVLELKGCGVLSDA 710 (733)
Q Consensus 648 ~~-----~~p~L~~L~L~~c~~L~~~~---~~~~~L~~L~L~~c~------~L~~l~~~---~~~L~~L~l~~c~~L~~~ 710 (733)
+. .+++|++|+|+++ .++.+. ....+|++|++++++ -...+|.. ..+|++|++++|.. +.+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 52 6799999999994 444421 234689999996543 23334322 23699999999887 555
Q ss_pred CC-CCCCccEEeccCcc
Q 004729 711 YI-NCPLLTSLDASFCR 726 (733)
Q Consensus 711 ~~-~~p~L~~L~l~~C~ 726 (733)
.. -+++|+.|++++|+
T Consensus 582 p~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 582 NEKITPNISVLDIKDNP 598 (636)
T ss_dssp CSCCCTTCCEEECCSCT
T ss_pred CHhHhCcCCEEECcCCC
Confidence 54 34899999999996
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=7e-20 Score=204.74 Aligned_cols=330 Identities=19% Similarity=0.207 Sum_probs=212.0
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++.++. +... +.+..+++|++|++++|.+....+ +..+++|++|+++++.+....+ ...+++|++|+
T Consensus 46 ~~l~~L~l~~~~-i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCC-CccC--cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 467777776643 2221 235678888888888887775433 7788888888888887765443 56788888888
Q ss_pred eeccccchhc--ccCCCCcEEEEcCCchHH--HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChh
Q 004729 367 ITKCRVMRVS--IRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE 442 (733)
Q Consensus 367 L~~~~~~~i~--~~~~~L~~L~L~~~~l~~--~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~ 442 (733)
+++|.+..+. ..+++|+.|+++++.+.. .+..+++|++|.+.+. +.... .+..+++|+.|+++++. ++..
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~--~~~~~---~~~~l~~L~~L~l~~n~-l~~~ 192 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ--VTDLK---PLANLTTLERLDISSNK-VSDI 192 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEES--CCCCG---GGTTCTTCCEEECCSSC-CCCC
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCc--ccCch---hhccCCCCCEEECcCCc-CCCC
Confidence 8888765443 567888888888765543 2567888888888753 22211 15677888888888876 4432
Q ss_pred HHHHHHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCC
Q 004729 443 SLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPR 520 (733)
Q Consensus 443 ~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~ 520 (733)
. . ...+++|++|+++++..... ....+++|++|+++++. +.+. ..+..+++|++|++++|......+. .+++
T Consensus 193 ~--~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 193 S--V-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTK 266 (466)
T ss_dssp G--G-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred h--h-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCC-cccc--hhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence 1 1 33677888888887763222 23357788888888743 4443 3466778888888888753322221 2566
Q ss_pred CcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhh
Q 004729 521 LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 600 (733)
Q Consensus 521 L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~ 600 (733)
|+.|.+.++. ++.+. .+..+++|+.|++.+|.++.+.. ...+++|+.|++++| .+++...
T Consensus 267 L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~---------~~~l~~L~~L~L~~n-~l~~~~~ 326 (466)
T 1o6v_A 267 LTELKLGANQ-ISNIS---------PLAGLTALTNLELNENQLEDISP---------ISNLKNLTYLTLYFN-NISDISP 326 (466)
T ss_dssp CSEEECCSSC-CCCCG---------GGTTCTTCSEEECCSSCCSCCGG---------GGGCTTCSEEECCSS-CCSCCGG
T ss_pred CCEEECCCCc-cCccc---------cccCCCccCeEEcCCCcccCchh---------hcCCCCCCEEECcCC-cCCCchh
Confidence 7777666542 22211 15667788888888887765432 236678888888875 5554432
Q ss_pred hhhcCCCCCCCccEEEeecCCCCccccc--cCCCccEEeccccccccccc--cccccccEEecccc
Q 004729 601 EVFSDGGGCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITALE--LKCPILEKVCLDGC 662 (733)
Q Consensus 601 ~~~~~~~~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l~--~~~p~L~~L~L~~c 662 (733)
...+++|+.|++++| .++.++. .+++|+.|++++|. +..+. ..+++|++|++++|
T Consensus 327 -----~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 327 -----VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp -----GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCE
T ss_pred -----hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCC
Confidence 245778888888777 3544432 56777777777753 33322 35677777777774
No 28
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=4.5e-20 Score=205.76 Aligned_cols=243 Identities=19% Similarity=0.229 Sum_probs=159.5
Q ss_pred CeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhH----HHHHHhhcCCCCCEEEecCccCChHHHHhcc-CCC-
Q 004729 263 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCS- 336 (733)
Q Consensus 263 lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~-~~~- 336 (733)
-.+.+++....+....+..++..+++++.|+++++. +.. .....+..+++|++|+|++|.+.+..+..+. .++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 356778877778887777878888899999998865 332 2345566788999999998888776554443 344
Q ss_pred ---CCcEEEEecCcCCc----ccccccccCCCccEEEeeccccchh---------cccCCCCcEEEEcCCchH-------
Q 004729 337 ---MLKSLNVNDATLGN----GVQEIPINHDQLRRLEITKCRVMRV---------SIRCPQLEHLSLKRSNMA------- 393 (733)
Q Consensus 337 ---~L~~L~L~~~~l~~----~~~~~~~~~~~L~~L~L~~~~~~~i---------~~~~~~L~~L~L~~~~l~------- 393 (733)
+|++|++++|.+.+ .++.....+++|++|++++|.+... ....++|++|+++++.+.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999888774 3455567788888888888876421 123456888888776543
Q ss_pred -HHhhCCCCccEEEEecCCCCChHHHHHHHh----cCCCCcEEeccCCCCCChhH---HHHHHHhcccccccccccCCCC
Q 004729 394 -QAVLNCPLLHLLDIASCHKLSDAAIRLAAT----SCPQLESLDMSNCSCVSDES---LREIALSCANLRILNSSYCPNI 465 (733)
Q Consensus 394 -~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~----~~~~L~~L~L~~~~~l~~~~---l~~l~~~~~~L~~L~L~~~~~l 465 (733)
..+..+++|++|+++++ .+.+..+..+.. ..++|++|++++|. +++.+ +......+++|++|+++++..-
T Consensus 163 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 33456778888888775 366555444333 34578888887776 65554 3333446677777777776411
Q ss_pred Cc--------CCCCCCCccEEEeCCCCCCchHHH----HHhhCCCCcCEEEEecCC
Q 004729 466 SL--------ESVRLPMLTVLQLHSCEGITSASM----AAISHSYMLEVLELDNCN 509 (733)
Q Consensus 466 ~~--------~~~~l~~L~~L~L~~c~~l~~~~~----~~l~~~~~L~~L~L~~~~ 509 (733)
.. ....+++|++|++++| .+++.+. ..+..+++|++|++++|.
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 10 0114667777777775 4666542 334446777777777764
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=2.1e-20 Score=208.14 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=130.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCccc-ccccccCCCccEEEeeccccchh----cccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGV-QEIPINHDQLRRLEITKCRVMRV----SIRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~-~~~~~~~~~L~~L~L~~~~~~~i----~~~~~~L~~L~ 386 (733)
++|++|+|++|.++...+..+..+++|++|+++++.+...+ +..+..+++|++|++++|.+..+ ...+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57888888888887666667778888888888888765333 34456778888888888876543 34577888888
Q ss_pred EcCCchHH------HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHH-hccccccccc
Q 004729 387 LKRSNMAQ------AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL-SCANLRILNS 459 (733)
Q Consensus 387 L~~~~l~~------~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~-~~~~L~~L~L 459 (733)
++++.+.. .+..+++|++|+++++ .+.......++..+++|+.|+++++. ++......+.. ...+|+.|++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccccc
Confidence 88876642 1556788888888885 34433222335678889999988876 33221111110 1257888888
Q ss_pred ccCCCCCcC-----------CCCCCCccEEEeCCCCCCchHHHHHhhC---CCCcCEEEEecCCC
Q 004729 460 SYCPNISLE-----------SVRLPMLTVLQLHSCEGITSASMAAISH---SYMLEVLELDNCNL 510 (733)
Q Consensus 460 ~~~~~l~~~-----------~~~l~~L~~L~L~~c~~l~~~~~~~l~~---~~~L~~L~L~~~~~ 510 (733)
+++...... ...+++|++|+++++ .+.......+.. .++|+.|++++|..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccc
Confidence 776633221 224578999999984 566655555543 47889999888754
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.4e-19 Score=193.97 Aligned_cols=278 Identities=22% Similarity=0.285 Sum_probs=135.9
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
.+++++.|++.++. +... ..+..+++|++|++++|.+.+... +..+++|++|++++|.+... + ....+++|++
T Consensus 42 ~l~~L~~L~l~~~~-i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-~-~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-S-ALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSE
T ss_pred hcccccEEEEeCCc-cccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-h-HHcCCCcCCE
Confidence 34567777776633 2221 235566677777777666654322 56666777777766655432 2 2345556666
Q ss_pred EEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH
Q 004729 365 LEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL 444 (733)
Q Consensus 365 L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l 444 (733)
|++++|.+..+. . +..+++|++|++++|..+.... .+..+++|+.|+++++. +.....
T Consensus 115 L~l~~n~i~~~~-----------------~-~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~-~~~~~~ 172 (347)
T 4fmz_A 115 LYLNEDNISDIS-----------------P-LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESK-VKDVTP 172 (347)
T ss_dssp EECTTSCCCCCG-----------------G-GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSC-CCCCGG
T ss_pred EECcCCcccCch-----------------h-hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCC-cCCchh
Confidence 666555443221 1 3445555555555543333221 13455556666665554 222111
Q ss_pred HHHHHhcccccccccccCCCCCcC-CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc--CCCCC
Q 004729 445 REIALSCANLRILNSSYCPNISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRL 521 (733)
Q Consensus 445 ~~l~~~~~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~--~l~~L 521 (733)
...+++|++|++++|...... ...+++|+.|++.++ .+.+... +..+++|++|++++|. ++.++. .+++|
T Consensus 173 ---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L 245 (347)
T 4fmz_A 173 ---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNK-ITDLSPLANLSQL 245 (347)
T ss_dssp ---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSC-CCCCGGGTTCTTC
T ss_pred ---hccCCCCCEEEccCCcccccccccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCc-cCCCcchhcCCCC
Confidence 224455555555554321111 224555666666553 2332221 4555666666666553 222221 23445
Q ss_pred cEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhh
Q 004729 522 QNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCE 601 (733)
Q Consensus 522 ~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~ 601 (733)
+.|++.++ .++.+. .+..+++|+.|++++|.++.+. ....+++|+.|++++| .+++....
T Consensus 246 ~~L~l~~n-~l~~~~---------~~~~l~~L~~L~l~~n~l~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~~ 305 (347)
T 4fmz_A 246 TWLEIGTN-QISDIN---------AVKDLTKLKMLNVGSNQISDIS---------VLNNLSQLNSLFLNNN-QLGNEDME 305 (347)
T ss_dssp CEEECCSS-CCCCCG---------GGTTCTTCCEEECCSSCCCCCG---------GGGGCTTCSEEECCSS-CCCGGGHH
T ss_pred CEEECCCC-ccCCCh---------hHhcCCCcCEEEccCCccCCCh---------hhcCCCCCCEEECcCC-cCCCcChh
Confidence 55544443 122211 1445566666666666555431 1224556666666664 45544444
Q ss_pred hhcCCCCCCCccEEEeecCC
Q 004729 602 VFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 602 ~~~~~~~l~~L~~L~L~~c~ 621 (733)
.+ +.+++|+.|++++|+
T Consensus 306 ~l---~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 306 VI---GGLTNLTTLFLSQNH 322 (347)
T ss_dssp HH---HTCTTCSEEECCSSS
T ss_pred Hh---hccccCCEEEccCCc
Confidence 44 345666666666653
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.8e-20 Score=208.68 Aligned_cols=275 Identities=21% Similarity=0.252 Sum_probs=124.1
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc-ccCCCCcEEEEc
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-IRCPQLEHLSLK 388 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~-~~~~~L~~L~L~ 388 (733)
.+++|++|+++++.+++. +.+..+++|++|++++|.+... + ...+++|++|++++|.+..++ ..+++|+.|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccC--hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECC
Confidence 455666666666666542 2455666666666666665542 1 345566666666665543221 223334444444
Q ss_pred CCchHHH-hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc
Q 004729 389 RSNMAQA-VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL 467 (733)
Q Consensus 389 ~~~l~~~-~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~ 467 (733)
+|.+..+ +..+++|++|+++++ .+.... +..+++|+.|+++++..+...
T Consensus 115 ~N~l~~l~~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~------------------------- 164 (457)
T 3bz5_A 115 TNKLTKLDVSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKL------------------------- 164 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCC-------------------------
T ss_pred CCcCCeecCCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCccccc-------------------------
Confidence 3332211 233444555555443 222211 233445555555444322221
Q ss_pred CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCCccccccccccceee
Q 004729 468 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSSIM 546 (733)
Q Consensus 468 ~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~ 546 (733)
....+++|++|+++++ .++... ++.+++|+.|++++|. ++.++. .+++|+.|++.++ .+..+.
T Consensus 165 ~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N-----------~l~~ip 228 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSN-----------KLTEID 228 (457)
T ss_dssp CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSS-----------CCSCCC
T ss_pred ccccCCcCCEEECCCC-ccceec---cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCC-----------cccccC
Confidence 1223444555555442 233211 3344455555554442 222211 1233333333222 122222
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
+..+++|+.|++++|.++.+.+.....+..+.....+|+.|++++|..+.. ++ .+.+++|+.|++++|..+..+
T Consensus 229 ~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~-----~~-~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY-----FQ-AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE-----EE-CTTCTTCCCCCCTTCTTCCEE
T ss_pred ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc-----cc-ccccccCCEEECCCCccccee
Confidence 344555555555555555443222222211111223455555555433321 11 245677777777777766666
Q ss_pred cccCCCccEEecccc
Q 004729 627 RFCSTSLVSLSLVGC 641 (733)
Q Consensus 627 ~~~~~sL~~L~L~~c 641 (733)
+....+|+.|++++|
T Consensus 303 ~~~~~~L~~L~l~~~ 317 (457)
T 3bz5_A 303 DCQAAGITELDLSQN 317 (457)
T ss_dssp ECTTCCCSCCCCTTC
T ss_pred ccCCCcceEechhhc
Confidence 655555666655554
No 32
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=6.8e-20 Score=204.33 Aligned_cols=322 Identities=20% Similarity=0.260 Sum_probs=189.3
Q ss_pred CCccEEEEcCCCchhHHHHH-HhhcCCCCCEEEecCccCChH----HHHhccCCCCCcEEEEecCcCCcc-cccccccCC
Q 004729 287 PNATEVNIYGAPAIHLLVMK-AVSLLRNLEALTLGRGQLGDA----FFHALADCSMLKSLNVNDATLGNG-VQEIPINHD 360 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~-~l~~l~~L~~L~Ls~~~i~~~----~~~~L~~~~~L~~L~L~~~~l~~~-~~~~~~~~~ 360 (733)
++++.|++++.. +....+. .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. ...+...++
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 468899998754 4444343 477899999999999999864 456677889999999999987653 333444444
Q ss_pred ----CccEEEeeccccch--------hcccCCCCcEEEEcCCchHHH---------hhCCCCccEEEEecCCCCChHH--
Q 004729 361 ----QLRRLEITKCRVMR--------VSIRCPQLEHLSLKRSNMAQA---------VLNCPLLHLLDIASCHKLSDAA-- 417 (733)
Q Consensus 361 ----~L~~L~L~~~~~~~--------i~~~~~~L~~L~L~~~~l~~~---------~~~~~~L~~L~L~~c~~l~~~~-- 417 (733)
+|++|++++|.+.. ....+++|++|+++++.+... ....++|++|++++| .+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH
Confidence 79999999998652 225678888888888876521 223567888888886 465543
Q ss_pred -HHHHHhcCCCCcEEeccCCCCCChhHHHHHHHh----cccccccccccCCCCCc-------CCCCCCCccEEEeCCCCC
Q 004729 418 -IRLAATSCPQLESLDMSNCSCVSDESLREIALS----CANLRILNSSYCPNISL-------ESVRLPMLTVLQLHSCEG 485 (733)
Q Consensus 418 -l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~----~~~L~~L~L~~~~~l~~-------~~~~l~~L~~L~L~~c~~ 485 (733)
+...+..+++|++|+++++. +++..+..+... .++|++|++++|..... ....+++|++|+++++ .
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 238 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-K 238 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-B
T ss_pred HHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-c
Confidence 44556678888888888887 777666666543 34777777777642211 1114677777777774 4
Q ss_pred CchHHHHHhh-----CCCCcCEEEEecCCCCcc-----ccc---CCCCCcEEEeccccCCccccccccccceeecccCcC
Q 004729 486 ITSASMAAIS-----HSYMLEVLELDNCNLLTS-----VSL---ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 552 (733)
Q Consensus 486 l~~~~~~~l~-----~~~~L~~L~L~~~~~l~~-----~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~ 552 (733)
+++.....+. .+++|++|++++|. ++. ++. .+++|+.|++.++ .+++.+... +........++
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~--l~~~l~~~~~~ 314 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARL--LCETLLEPGCQ 314 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHH--HHHHHTSTTCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHH--HHHHhccCCcc
Confidence 6665543332 35677777777763 333 121 1455555555544 222221111 00000112245
Q ss_pred CceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcC-C-CCCCCccEEEeecC
Q 004729 553 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSD-G-GGCPMLKSLVLDNC 620 (733)
Q Consensus 553 L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~-~-~~l~~L~~L~L~~c 620 (733)
|+.|++.+|.++... ...+......+++|+.|++++| .+++.....+.. . ...++|++|+|++|
T Consensus 315 L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 315 LESLWVKSCSFTAAC---CSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CCEEECTTSCCBGGG---HHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ceeeEcCCCCCchHH---HHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 555555555544321 1222233334555555555553 455443332211 0 11445555555555
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=2.3e-20 Score=207.67 Aligned_cols=285 Identities=16% Similarity=0.153 Sum_probs=172.7
Q ss_pred ccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCC
Q 004729 332 LADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCH 411 (733)
Q Consensus 332 L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~ 411 (733)
++++++|++|+++++.+... + ....+++|++|++++|.+..++ +..+++|++|+++++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~-------------------~~~l~~L~~L~Ls~N- 95 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD-------------------LSQNTNLTYLACDSN- 95 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC-------------------CTTCTTCSEEECCSS-
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc-------------------cccCCCCCEEECcCC-
Confidence 45578999999999887753 3 3457788888888887654432 234455666666553
Q ss_pred CCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHH
Q 004729 412 KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASM 491 (733)
Q Consensus 412 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~ 491 (733)
.+.... +..+++|++|+++++. ++... ...+++|++|+++++.........+++|++|+++++..+...
T Consensus 96 ~l~~~~----~~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 96 KLTNLD----VTPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp CCSCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--
T ss_pred CCceee----cCCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--
Confidence 233321 3456677777777665 43321 235667777777766533334557888999999887555544
Q ss_pred HHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccc
Q 004729 492 AAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQK 570 (733)
Q Consensus 492 ~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~ 570 (733)
.+..+++|++|++++|. ++.++. .+++|+.|.+.++ .++.+.+..+++|+.|++++|.++.+.
T Consensus 165 -~~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N-----------~l~~~~l~~l~~L~~L~Ls~N~l~~ip--- 228 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTN-----------NITKLDLNQNIQLTFLDCSSNKLTEID--- 228 (457)
T ss_dssp -CCTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSS-----------CCSCCCCTTCTTCSEEECCSSCCSCCC---
T ss_pred -ccccCCcCCEEECCCCc-cceeccccCCCCCEEECcCC-----------cCCeeccccCCCCCEEECcCCcccccC---
Confidence 36678899999999884 454443 2455666655443 344445788899999999999988753
Q ss_pred cccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCccEEecccccccccccc-
Q 004729 571 QENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL- 649 (733)
Q Consensus 571 ~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~- 649 (733)
...+++|+.|++++ +.++... .+.+++|+.|.+..+ +|+.|++++|..+..++.
T Consensus 229 -------~~~l~~L~~L~l~~-N~l~~~~------~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~~~~~~ 283 (457)
T 3bz5_A 229 -------VTPLTQLTYFDCSV-NPLTELD------VSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLIYFQAE 283 (457)
T ss_dssp -------CTTCTTCSEEECCS-SCCSCCC------CTTCTTCCEEECTTC-----------CCSCCCCTTCTTCCEEECT
T ss_pred -------ccccCCCCEEEeeC-CcCCCcC------HHHCCCCCEEeccCC-----------CCCEEECCCCccCCccccc
Confidence 23678999999998 4666432 245666766665442 334444444443333332
Q ss_pred ccccccEEecccccccccccccccCCcEEEecCCCCccccc
Q 004729 650 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 690 (733)
Q Consensus 650 ~~p~L~~L~L~~c~~L~~~~~~~~~L~~L~L~~c~~L~~l~ 690 (733)
.|++|+.|++++|..++.+.....+|+.|++++|++|+.+.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 34555555555554444433333344444444444444433
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=4.8e-20 Score=211.15 Aligned_cols=209 Identities=13% Similarity=0.118 Sum_probs=121.9
Q ss_pred CCCcCEEEEecCCCCcccccCC-----CCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCcccccccccc
Q 004729 497 SYMLEVLELDNCNLLTSVSLEL-----PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQ 571 (733)
Q Consensus 497 ~~~L~~L~L~~~~~l~~~~~~l-----~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~ 571 (733)
.++|++|++++|.....+|..+ ++|+.|.+.+...-. +.+....+. .+....+|+.|++.+|.+..+..
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~-~~~p~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--- 348 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV-FLFSKEALY--SVFAEMNIKMLSISDTPFIHMVC--- 348 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC-CSSCHHHHH--HHHHTCCCSEEEEESSCCCCCCC---
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccce-eecChhhhh--hhhccCcceEEEccCCCcccccC---
Confidence 3477777777765433455443 556665554322111 000000000 01112457778887777654432
Q ss_pred ccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc------ccCCCccEEecccccccc
Q 004729 572 ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR------FCSTSLVSLSLVGCRAIT 645 (733)
Q Consensus 572 ~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~------~~~~sL~~L~L~~c~~L~ 645 (733)
...+++|+.|++++ +.+++..+..+ +.+++|+.|+++++ .++.++ ..+++|+.|+++++. ++
T Consensus 349 ------~~~l~~L~~L~l~~-n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~ 416 (562)
T 3a79_B 349 ------PPSPSSFTFLNFTQ-NVFTDSVFQGC---STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LN 416 (562)
T ss_dssp ------CSSCCCCCEEECCS-SCCCTTTTTTC---CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CB
T ss_pred ------ccCCCCceEEECCC-Cccccchhhhh---cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CC
Confidence 12567888888888 46665433333 56788888888776 455432 256788888888753 44
Q ss_pred c-cc----cccccccEEecccccccccccc--cccCCcEEEecCCCCccccccCc---ccccEEEecCCCCCCccC----
Q 004729 646 A-LE----LKCPILEKVCLDGCDHIESASF--VPVALQSLNLGICPKLSTLGIEA---LHMVVLELKGCGVLSDAY---- 711 (733)
Q Consensus 646 ~-l~----~~~p~L~~L~L~~c~~L~~~~~--~~~~L~~L~L~~c~~L~~l~~~~---~~L~~L~l~~c~~L~~~~---- 711 (733)
. ++ ..+++|++|+++++. ++...+ .+.+|++|+++++ +++.+|... .+|+.|++++|.. +.+.
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~ 493 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQL-KSVPDGVF 493 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCC-CCCCTTST
T ss_pred CccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCC-CCCCHHHH
Confidence 3 33 256888888888854 443222 2357888888887 577776433 3588888888653 3332
Q ss_pred CCCCCccEEeccCcc
Q 004729 712 INCPLLTSLDASFCR 726 (733)
Q Consensus 712 ~~~p~L~~L~l~~C~ 726 (733)
..+++|+.|++++++
T Consensus 494 ~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 494 DRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCTTCCCEECCSCC
T ss_pred hcCCCCCEEEecCCC
Confidence 267888888888764
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=6.8e-19 Score=201.53 Aligned_cols=391 Identities=15% Similarity=0.171 Sum_probs=230.9
Q ss_pred eEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEe
Q 004729 265 RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVN 344 (733)
Q Consensus 265 ~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~ 344 (733)
+.+++....+.. +.. .-.++++.|++++. .+.......+..+++|++|+|++|.++...+..+..+++|++|+++
T Consensus 34 ~~l~ls~~~L~~--ip~--~~~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNRNLTH--VPK--DLPPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTSCCCS--CCT--TSCTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcCCCCCcc--CCC--CCCCCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 567766544431 111 11367899999884 3454444567888999999999998887667778889999999999
Q ss_pred cCcCCcccccccccCCCccEEEeeccccchh-----cccCCCCcEEEEcCCchHH-HhhCCCCc--cEEEEecCCCC--C
Q 004729 345 DATLGNGVQEIPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMAQ-AVLNCPLL--HLLDIASCHKL--S 414 (733)
Q Consensus 345 ~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i-----~~~~~~L~~L~L~~~~l~~-~~~~~~~L--~~L~L~~c~~l--~ 414 (733)
+|.+. .++.. .+++|++|++++|.+..+ ...+++|+.|+++++.+.. .+..+++| ++|+++++. + .
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~-l~~~ 184 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS-YHIK 184 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESS-CCCC
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccc-cccc
Confidence 99877 34433 788999999999887643 3468889999998887653 23445555 888887753 2 0
Q ss_pred h-----------------------------------------------------HHHHHHHhcCCCCcEEeccCCCCCCh
Q 004729 415 D-----------------------------------------------------AAIRLAATSCPQLESLDMSNCSCVSD 441 (733)
Q Consensus 415 ~-----------------------------------------------------~~l~~l~~~~~~L~~L~L~~~~~l~~ 441 (733)
. ......+..+++|+.|++..+. +..
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTW 263 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc-CcH
Confidence 0 0011123344555555555444 444
Q ss_pred hHHHHHHH--hcccccccccccCC---CCCcCC-----CCCCCccEEEeCCCCC-CchHHHHHhhCCCCcCEEEEecCCC
Q 004729 442 ESLREIAL--SCANLRILNSSYCP---NISLES-----VRLPMLTVLQLHSCEG-ITSASMAAISHSYMLEVLELDNCNL 510 (733)
Q Consensus 442 ~~l~~l~~--~~~~L~~L~L~~~~---~l~~~~-----~~l~~L~~L~L~~c~~-l~~~~~~~l~~~~~L~~L~L~~~~~ 510 (733)
..+..+.. ..++|++|+++++. .++... ..++.|+.+++..... +....+..+....+|++|++++|..
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 43333322 23477777777765 222222 2333444444433211 1112222222346788888888754
Q ss_pred Ccccc--cCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEe
Q 004729 511 LTSVS--LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVD 588 (733)
Q Consensus 511 l~~~~--~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~ 588 (733)
...+ ..+++|+.|++.++. ++..... .+..+++|+.|++.+|.++.+. .+......+++|+.|+
T Consensus 344 -~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 344 -IHMVCPPSPSSFTFLNFTQNV-FTDSVFQ-------GCSTLKRLQTLILQRNGLKNFF-----KVALMTKNMSSLETLD 409 (562)
T ss_dssp -CCCCCCSSCCCCCEEECCSSC-CCTTTTT-------TCCSCSSCCEEECCSSCCCBTT-----HHHHTTTTCTTCCEEE
T ss_pred -ccccCccCCCCceEEECCCCc-cccchhh-------hhcccCCCCEEECCCCCcCCcc-----cchhhhcCCCCCCEEE
Confidence 3332 346777777776653 2221111 2567788888888888777542 2222334677888888
Q ss_pred ecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccC-CCccEEecccccccccccc---ccccccEEecccccc
Q 004729 589 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS-TSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDH 664 (733)
Q Consensus 589 Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~-~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c~~ 664 (733)
+++| .++...... ....+++|+.|++++|.--..++..+ ++|+.|+++++ .|+.++. .+++|++|+++++ .
T Consensus 410 l~~N-~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~ 484 (562)
T 3a79_B 410 VSLN-SLNSHAYDR--TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-Q 484 (562)
T ss_dssp CTTS-CCBSCCSSC--CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-C
T ss_pred CCCC-cCCCccChh--hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-C
Confidence 8884 565422111 12467788888888874323333333 57888888875 5665543 5678888888773 4
Q ss_pred ccccc---c-cccCCcEEEecCCC
Q 004729 665 IESAS---F-VPVALQSLNLGICP 684 (733)
Q Consensus 665 L~~~~---~-~~~~L~~L~L~~c~ 684 (733)
++.+. + ...+|++|++++++
T Consensus 485 l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 485 LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCHHHHhcCCCCCEEEecCCC
Confidence 44322 1 12356666666654
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=1.4e-18 Score=194.23 Aligned_cols=334 Identities=20% Similarity=0.197 Sum_probs=245.7
Q ss_pred eEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEe
Q 004729 265 RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVN 344 (733)
Q Consensus 265 ~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~ 344 (733)
+.+++....+.. +.. +..+++++.|+++++. +..... +..+++|++|++++|.+....+ +..+++|++|+++
T Consensus 49 ~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 49 TTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp CEEECCSSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 455555543321 111 4568899999999854 333322 7899999999999998885443 8899999999999
Q ss_pred cCcCCcccccccccCCCccEEEeeccccchh--cccCCCCcEEEEcCCchH-HHhhCCCCccEEEEecCCCCChHHHHHH
Q 004729 345 DATLGNGVQEIPINHDQLRRLEITKCRVMRV--SIRCPQLEHLSLKRSNMA-QAVLNCPLLHLLDIASCHKLSDAAIRLA 421 (733)
Q Consensus 345 ~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i--~~~~~~L~~L~L~~~~l~-~~~~~~~~L~~L~L~~c~~l~~~~l~~l 421 (733)
+|.+....+ ...+++|++|++++|.+..+ ...+++|+.|.+.++... ..+..+++|++|+++++. +.... .
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~ 194 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS---V 194 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG---G
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh---h
Confidence 998776433 67899999999999987654 357899999999743111 237789999999999964 55432 3
Q ss_pred HhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCc
Q 004729 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYML 500 (733)
Q Consensus 422 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L 500 (733)
+..+++|+.|+++++. ++.... ...+++|+.|+++++..... ....+++|++|++++|. +..... +..+++|
T Consensus 195 l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP--LSGLTKL 267 (466)
T ss_dssp GGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTC
T ss_pred hccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh--hhcCCCC
Confidence 6788999999999987 444322 34689999999998873332 23378999999999964 544332 7889999
Q ss_pred CEEEEecCCCCccccc--CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHH
Q 004729 501 EVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLA 578 (733)
Q Consensus 501 ~~L~L~~~~~l~~~~~--~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~ 578 (733)
++|++++|.. ..++. .+++|+.|.+.++. ++.+. .+..+++|+.|++.+|.+..+.. .
T Consensus 268 ~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~---------~ 327 (466)
T 1o6v_A 268 TELKLGANQI-SNISPLAGLTALTNLELNENQ-LEDIS---------PISNLKNLTYLTLYFNNISDISP---------V 327 (466)
T ss_dssp SEEECCSSCC-CCCGGGTTCTTCSEEECCSSC-CSCCG---------GGGGCTTCSEEECCSSCCSCCGG---------G
T ss_pred CEEECCCCcc-CccccccCCCccCeEEcCCCc-ccCch---------hhcCCCCCCEEECcCCcCCCchh---------h
Confidence 9999999854 43332 36888888887763 33321 16789999999999999887632 2
Q ss_pred hcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc--cCCCccEEecccccccccc
Q 004729 579 LQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF--CSTSLVSLSLVGCRAITAL 647 (733)
Q Consensus 579 ~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~--~~~sL~~L~L~~c~~L~~l 647 (733)
..+++|+.|++++| .+++. .....+++|+.|++++|. ++.... .+++|+.|++++|+ ++.+
T Consensus 328 ~~l~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 328 SSLTKLQRLFFYNN-KVSDV-----SSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp GGCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEE-EECC
T ss_pred ccCccCCEeECCCC-ccCCc-----hhhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCc-ccCC
Confidence 37899999999996 67654 224679999999999985 444432 78899999999964 4443
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=4.4e-20 Score=205.29 Aligned_cols=293 Identities=16% Similarity=0.129 Sum_probs=143.6
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCch
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l 392 (733)
++++|+++++.++. ++. -.++|++|++++|.+.. ++ ..+++|++|++++|.+..++...++|++|++++|.+
T Consensus 72 ~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp---~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 72 QAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LP---ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL 143 (454)
T ss_dssp TCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CC---CCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC
T ss_pred CCCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cc---cccCCCcEEECCCCccCcccCCCCCCCEEECcCCCC
Confidence 34666666665542 111 12556666666665543 22 223566666666665555444445666666666544
Q ss_pred HHH--hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCC
Q 004729 393 AQA--VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV 470 (733)
Q Consensus 393 ~~~--~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~ 470 (733)
..+ +..+++|++|+++++ .+... + ...++|+.|+++++. ++. ++. +..+++|+.|+++++...... .
T Consensus 144 ~~lp~~~~l~~L~~L~l~~N-~l~~l--p---~~~~~L~~L~L~~n~-l~~--l~~-~~~l~~L~~L~l~~N~l~~l~-~ 212 (454)
T 1jl5_A 144 EKLPELQNSSFLKIIDVDNN-SLKKL--P---DLPPSLEFIAAGNNQ-LEE--LPE-LQNLPFLTAIYADNNSLKKLP-D 212 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSS-CCSCC--C---CCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSCCSSCC-C
T ss_pred CCCcccCCCCCCCEEECCCC-cCccc--C---CCcccccEEECcCCc-CCc--Ccc-ccCCCCCCEEECCCCcCCcCC-C
Confidence 332 345566666666664 23321 1 122466666666654 322 111 225556666666655422111 1
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccC
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 550 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c 550 (733)
..++|++|+++++ .+.... .++.+++|++|++++|. ++.++..+++|+.|.+.++. ++.+. ...
T Consensus 213 ~~~~L~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~-l~~l~-----------~~~ 276 (454)
T 1jl5_A 213 LPLSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNY-LTDLP-----------ELP 276 (454)
T ss_dssp CCTTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSC-CSCCC-----------CCC
T ss_pred CcCcccEEECcCC-cCCccc--ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCc-ccccC-----------ccc
Confidence 2245666666663 233221 24555666666666553 34444444555555554432 22110 112
Q ss_pred cCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccC
Q 004729 551 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS 630 (733)
Q Consensus 551 ~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~ 630 (733)
++|+.|++++|.++.+.. ..++|+.|++++| .++. +. ...++|+.|+++++ .++.++..+
T Consensus 277 ~~L~~L~ls~N~l~~l~~-----------~~~~L~~L~l~~N-~l~~-----i~--~~~~~L~~L~Ls~N-~l~~lp~~~ 336 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSE-----------LPPNLYYLNASSN-EIRS-----LC--DLPPSLEELNVSNN-KLIELPALP 336 (454)
T ss_dssp TTCCEEECCSSCCSEESC-----------CCTTCCEEECCSS-CCSE-----EC--CCCTTCCEEECCSS-CCSCCCCCC
T ss_pred CcCCEEECcCCccCcccC-----------cCCcCCEEECcCC-cCCc-----cc--CCcCcCCEEECCCC-ccccccccC
Confidence 456666666665554310 1145666666653 4432 11 11235666666554 344454455
Q ss_pred CCccEEeccccccccccccccccccEEeccc
Q 004729 631 TSLVSLSLVGCRAITALELKCPILEKVCLDG 661 (733)
Q Consensus 631 ~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~ 661 (733)
++|+.|+++++ .++.++..+++|++|++++
T Consensus 337 ~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~ 366 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPELPQNLKQLHVEY 366 (454)
T ss_dssp TTCCEEECCSS-CCSCCCCCCTTCCEEECCS
T ss_pred CcCCEEECCCC-ccccccchhhhccEEECCC
Confidence 66666666653 3444444455666666665
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.9e-19 Score=200.40 Aligned_cols=321 Identities=17% Similarity=0.159 Sum_probs=155.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChH-HHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~-~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
++++.|++++. .+....+..+..+++|++|++++|.+... .+..+..+++|++|+|++|.+....+..+..+++|++|
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 34555555552 23333333445555566666555554322 12334555556666665555554444444555555666
Q ss_pred Eeeccccch-h-----cccCCCCcEEEEcCCchHHH-----hhCCCCccEEEEecCCCCChHHHHHH-------------
Q 004729 366 EITKCRVMR-V-----SIRCPQLEHLSLKRSNMAQA-----VLNCPLLHLLDIASCHKLSDAAIRLA------------- 421 (733)
Q Consensus 366 ~L~~~~~~~-i-----~~~~~~L~~L~L~~~~l~~~-----~~~~~~L~~L~L~~c~~l~~~~l~~l------------- 421 (733)
++++|.+.. + ...+++|+.|++++|.+... +..+++|++|+++++. +.......+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccccc
Confidence 655555432 1 23455555555555544322 4455555666555532 221110000
Q ss_pred --------------------HhcCCCCcEEeccCCCCCChhHHHHHHHh--cccccccccccCCCCCcCCCCCCCccEEE
Q 004729 422 --------------------ATSCPQLESLDMSNCSCVSDESLREIALS--CANLRILNSSYCPNISLESVRLPMLTVLQ 479 (733)
Q Consensus 422 --------------------~~~~~~L~~L~L~~~~~l~~~~l~~l~~~--~~~L~~L~L~~~~~l~~~~~~l~~L~~L~ 479 (733)
+..+++|+.|+++++. ++......+... .++|+.|.++++........ ..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~------ 259 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HT------ 259 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CC------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccc-hh------
Confidence 1122445555555554 443333333221 14555555544432111000 00
Q ss_pred eCCCCCCchHHHHHhh--CCCCcCEEEEecCCCCccccc---CCCCCcEEEeccccCCccccccccccceeecccCcCCc
Q 004729 480 LHSCEGITSASMAAIS--HSYMLEVLELDNCNLLTSVSL---ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALH 554 (733)
Q Consensus 480 L~~c~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~~---~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~ 554 (733)
.+.+.....+. ..++|++|++++|......+. .+++|+.|++.++. ++..... .+..+++|+
T Consensus 260 -----~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~ 326 (455)
T 3v47_A 260 -----NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN-------AFWGLTHLL 326 (455)
T ss_dssp -----SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-------TTTTCTTCC
T ss_pred -----hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh-------HhcCcccCC
Confidence 00000000011 124566666666643322222 24555555554442 1111100 256677888
Q ss_pred eeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cC
Q 004729 555 RINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CS 630 (733)
Q Consensus 555 ~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~ 630 (733)
.|++++|.++.+... .+..+++|+.|++++| .++......+ ..+++|++|+|+++ .++.++. .+
T Consensus 327 ~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l 394 (455)
T 3v47_A 327 KLNLSQNFLGSIDSR-------MFENLDKLEVLDLSYN-HIRALGDQSF---LGLPNLKELALDTN-QLKSVPDGIFDRL 394 (455)
T ss_dssp EEECCSSCCCEECGG-------GGTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred EEECCCCccCCcChh-------HhcCcccCCEEECCCC-cccccChhhc---cccccccEEECCCC-ccccCCHhHhccC
Confidence 888888877655321 2235678888888884 6665544334 56788888888776 4555543 56
Q ss_pred CCccEEeccccc
Q 004729 631 TSLVSLSLVGCR 642 (733)
Q Consensus 631 ~sL~~L~L~~c~ 642 (733)
++|+.|++++++
T Consensus 395 ~~L~~L~l~~N~ 406 (455)
T 3v47_A 395 TSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEEccCCC
Confidence 788888888753
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=2e-18 Score=184.99 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=178.1
Q ss_pred eeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEE
Q 004729 264 WRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNV 343 (733)
Q Consensus 264 w~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L 343 (733)
.+.+++....+.. +. .+..+++++.|+++++. +..... +..+++|++|++++|.+... ..+..+++|++|++
T Consensus 46 L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 46 ITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117 (347)
T ss_dssp CSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred ccEEEEeCCcccc--ch-hhhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEEC
Confidence 3566666544332 11 25678999999999863 333322 78999999999999988753 46889999999999
Q ss_pred ecCcCCcccccccccCCCccEEEeeccccchh---cccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHH
Q 004729 344 NDATLGNGVQEIPINHDQLRRLEITKCRVMRV---SIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRL 420 (733)
Q Consensus 344 ~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i---~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~ 420 (733)
++|.+..... ...+++|++|++++|..... ...+++|+.|+++++.+... ..
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------------~~-- 172 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV---------------------TP-- 172 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC---------------------GG--
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc---------------------hh--
Confidence 9998775433 66889999999998853321 23344555555554433211 10
Q ss_pred HHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcC-CCCCCCccEEEeCCCCCCchHHHHHhhCCCC
Q 004729 421 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYM 499 (733)
Q Consensus 421 l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~ 499 (733)
+..+++|+.|+++++. +..... ...+++|+.|.+.++...... ...+++|++|++++|. +++... +..+++
T Consensus 173 -~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~--~~~l~~ 244 (347)
T 4fmz_A 173 -IANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP--LANLSQ 244 (347)
T ss_dssp -GGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG--GTTCTT
T ss_pred -hccCCCCCEEEccCCc-cccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc--hhcCCC
Confidence 3344455555555443 222111 224445555555544321111 2345566666666642 333222 556666
Q ss_pred cCEEEEecCCCCcccc--cCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHH
Q 004729 500 LEVLELDNCNLLTSVS--LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSL 577 (733)
Q Consensus 500 L~~L~L~~~~~l~~~~--~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l 577 (733)
|++|++++|. ++.++ ..+++|+.|.+.++ .++.+. .+..+++|+.|++.+|.++.... ..
T Consensus 245 L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~-------~~ 306 (347)
T 4fmz_A 245 LTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQLNSLFLNNNQLGNEDM-------EV 306 (347)
T ss_dssp CCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEEECCSSCCCGGGH-------HH
T ss_pred CCEEECCCCc-cCCChhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCCCCEEECcCCcCCCcCh-------hH
Confidence 7777776663 33332 12566666666665 333321 15778899999999998875432 23
Q ss_pred HhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 578 ALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 578 ~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
...+++|+.|++++| .+++... ...+++|+.|++++|+
T Consensus 307 l~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQN-HITDIRP-----LASLSKMDSADFANQV 344 (347)
T ss_dssp HHTCTTCSEEECCSS-SCCCCGG-----GGGCTTCSEESSSCC-
T ss_pred hhccccCCEEEccCC-ccccccC-----hhhhhccceeehhhhc
Confidence 346889999999996 5665432 3568899999988874
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=1.1e-18 Score=190.19 Aligned_cols=207 Identities=18% Similarity=0.142 Sum_probs=131.0
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
.++++.+++.+. .+.......+..+++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467888888874 3444444556788899999999888876656677888999999999888877666667788889999
Q ss_pred Eeeccccchhc----ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 366 EITKCRVMRVS----IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 366 ~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++++|.+..++ ..+++|+.|+++++.+..+ +..+++|++|+++++ .+.... ...+++|+.|+++++.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc----cccccccceeeccccc
Confidence 98888776554 3467777887777765432 455677777777764 344332 3445677777776654
Q ss_pred CCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 438 CVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
++... ..++|+.|+++++..........++|++|++.++ .+++. ..+..+++|++|++++|
T Consensus 198 -l~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 198 -LSTLA------IPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp -CSEEE------CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS
T ss_pred -ccccC------CCCcceEEECCCCeeeeccccccccccEEECCCC-CCccc--HHHcCCCCccEEECCCC
Confidence 32211 2245666666555432222233445555555553 23332 23444555555555554
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=7.3e-18 Score=195.33 Aligned_cols=140 Identities=18% Similarity=0.109 Sum_probs=84.5
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc----ccCCCccEEecccccccccc----cccc
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR----FCSTSLVSLSLVGCRAITAL----ELKC 651 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~----~~~~sL~~L~L~~c~~L~~l----~~~~ 651 (733)
.+++|+.+++.+++......... ...+++|+.++++.+. +.... ..+++|+.|+++++..+..+ ...+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~---~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCT---TTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccchhhhhccccccccccc---cccccccccccccccc-cccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence 34555555555543222111111 2456667777776652 33322 25678888888887655432 2367
Q ss_pred ccccEEecccccccccc---ccc-ccCCcEEEecCCCCccccccCc----ccccEEEecCCCCCCcc---CCCC-CCccE
Q 004729 652 PILEKVCLDGCDHIESA---SFV-PVALQSLNLGICPKLSTLGIEA----LHMVVLELKGCGVLSDA---YINC-PLLTS 719 (733)
Q Consensus 652 p~L~~L~L~~c~~L~~~---~~~-~~~L~~L~L~~c~~L~~l~~~~----~~L~~L~l~~c~~L~~~---~~~~-p~L~~ 719 (733)
++|++|+|++| .++.+ .+. ..+|++|+|+++ +|+.++... .+|+.|+++++..-... ..++ ++|+.
T Consensus 494 ~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 494 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred cccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 88999999985 45443 222 358999999887 487776433 36889999887653222 2255 47999
Q ss_pred EeccCc
Q 004729 720 LDASFC 725 (733)
Q Consensus 720 L~l~~C 725 (733)
|++++.
T Consensus 572 L~L~~N 577 (635)
T 4g8a_A 572 LNLTQN 577 (635)
T ss_dssp EECTTC
T ss_pred EEeeCC
Confidence 999753
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=197.24 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=116.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ ..+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3567777766 334443344556677777777777777655556666777777777777766654444555667777777
Q ss_pred eeccccchh----cccCCCCcEEEEcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCC
Q 004729 367 ITKCRVMRV----SIRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSC 438 (733)
Q Consensus 367 L~~~~~~~i----~~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~ 438 (733)
+++|.+..+ ...+++|+.|++++|.+.. .+..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~l~~n~- 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIP-TEALSHLHGLIVLRLRHLN- 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCC-HHHHTTCTTCCEEEEESCC-
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccC-hhHhcccCCCcEEeCCCCc-
Confidence 777765433 2456667777766665432 2445666666666664 333222 2234556666666666654
Q ss_pred CChhHHHHHHHhcccccccccccCCCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 439 VSDESLREIALSCANLRILNSSYCPNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 439 l~~~~l~~l~~~~~~L~~L~L~~~~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
+..... ..+..+++|+.|+++++..+. .......+|++|+++++ .++......+..+++|+.|+|++|
T Consensus 188 i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 188 INAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS
T ss_pred CcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCC
Confidence 222111 011134455555555543221 11222335555555552 344333334445555555555554
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=4e-18 Score=185.87 Aligned_cols=297 Identities=19% Similarity=0.176 Sum_probs=147.4
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 385 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L 385 (733)
.+++++.|+++++.++......+..+++|++|+++++.+....+..+..+++|++|++++|.+..++ ..+++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 3578888888888776544445667888888888888777655555667788888888877665432 334555555
Q ss_pred EEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC
Q 004729 386 SLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 465 (733)
Q Consensus 386 ~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l 465 (733)
+++++.+..+. ..++..+++|++|+++++. ++.... ..+..+++|++|+++++...
T Consensus 123 ~L~~n~l~~l~----------------------~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERNDLSSLP----------------------RGIFHNTPKLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSC-CCBCCT-TTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccCcCC----------------------HHHhcCCCCCcEEECCCCc-cCccCh-hhccCCCCCCEEECCCCcCC
Confidence 55554433210 0112334444444444433 211100 00112334444444433322
Q ss_pred CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCCccccccccccce
Q 004729 466 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSS 544 (733)
Q Consensus 466 ~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l~~l~l~~~~L~~ 544 (733)
......+++|++|++.++ .+.. +...++|++|++++|. +..++. .+++|+.|.+.++. ++...
T Consensus 179 ~~~~~~l~~L~~L~l~~n-~l~~-----~~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~-l~~~~-------- 242 (390)
T 3o6n_A 179 HVDLSLIPSLFHANVSYN-LLST-----LAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNN-LTDTA-------- 242 (390)
T ss_dssp BCCGGGCTTCSEEECCSS-CCSE-----EECCSSCSEEECCSSC-CCEEECCCCSSCCEEECCSSC-CCCCG--------
T ss_pred ccccccccccceeecccc-cccc-----cCCCCcceEEECCCCe-eeeccccccccccEEECCCCC-CcccH--------
Confidence 222233455555555552 2221 2234456666666553 233222 23455555554442 22110
Q ss_pred eecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCc
Q 004729 545 IMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLT 624 (733)
Q Consensus 545 l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~ 624 (733)
.+..+++|+.|++++|.++.+... ....+++|+.|++++| .++... .....+++|+.|+|++| .++
T Consensus 243 -~l~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~----~~~~~l~~L~~L~L~~n-~l~ 308 (390)
T 3o6n_A 243 -WLLNYPGLVEVDLSYNELEKIMYH-------PFVKMQRLERLYISNN-RLVALN----LYGQPIPTLKVLDLSHN-HLL 308 (390)
T ss_dssp -GGGGCTTCSEEECCSSCCCEEESG-------GGTTCSSCCEEECCSS-CCCEEE----CSSSCCTTCCEEECCSS-CCC
T ss_pred -HHcCCCCccEEECCCCcCCCcChh-------HccccccCCEEECCCC-cCcccC----cccCCCCCCCEEECCCC-cce
Confidence 145556666666666665544221 1124556666666663 444321 11234566666666665 344
Q ss_pred cccc---cCCCccEEeccccccccccc-cccccccEEeccc
Q 004729 625 VVRF---CSTSLVSLSLVGCRAITALE-LKCPILEKVCLDG 661 (733)
Q Consensus 625 ~~~~---~~~sL~~L~L~~c~~L~~l~-~~~p~L~~L~L~~ 661 (733)
.++. .+++|+.|++++++ ++.++ ..+++|++|++++
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSH 348 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCS
T ss_pred ecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCC
Confidence 4332 34555555555532 33333 2345555555555
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=192.68 Aligned_cols=285 Identities=19% Similarity=0.206 Sum_probs=177.6
Q ss_pred CCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 386 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~ 386 (733)
.++++.|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|++++|.+..++ ..+++|+.|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 357999999999998766778889999999999999888766777788999999999999877654 4678999999
Q ss_pred EcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccC
Q 004729 387 LKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (733)
Q Consensus 387 L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (733)
|++|.+.. .+..+++|++|+++++ .+.... ...+..+++|+.|+++++. ++.... ..+..+++|+.|++.++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYIS-HRAFSGLNSLEQLTLEKCN-LTSIPT-EALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEEC-TTSSTTCTTCCEEEEESCC-CSSCCH-HHHTTCTTCCEEEEESC
T ss_pred CCCCccccCChhHccccccCCEEECCCC-ccceeC-hhhccCCCCCCEEECCCCc-CcccCh-hHhcccCCCcEEeCCCC
Confidence 99887653 3667888999999884 344322 1234567888888888876 443222 22336777888877766
Q ss_pred CCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccc
Q 004729 463 PNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADL 535 (733)
Q Consensus 463 ~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l 535 (733)
.... .....+++|++|++++|..+..... ......+|++|++++|. ++.++. .+++|+.|++.++. ++.+
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 263 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTI 263 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEE
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCc-ccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCcc
Confidence 5221 1223566777777776543333221 12223467777776663 334431 24555555554432 2211
Q ss_pred cccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEE
Q 004729 536 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 615 (733)
Q Consensus 536 ~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L 615 (733)
... .+..+++|+.|++.+|.++.+.... +..+++|+.|+|++ +.++......| ..+++|+.|
T Consensus 264 ~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L 325 (477)
T 2id5_A 264 EGS-------MLHELLRLQEIQLVGGQLAVVEPYA-------FRGLNYLRVLNVSG-NQLTTLEESVF---HSVGNLETL 325 (477)
T ss_dssp CTT-------SCTTCTTCCEEECCSSCCSEECTTT-------BTTCTTCCEEECCS-SCCSCCCGGGB---SCGGGCCEE
T ss_pred Chh-------hccccccCCEEECCCCccceECHHH-------hcCcccCCEEECCC-CcCceeCHhHc---CCCcccCEE
Confidence 110 1455566666666666655543221 12445666666666 35544333333 345566666
Q ss_pred EeecC
Q 004729 616 VLDNC 620 (733)
Q Consensus 616 ~L~~c 620 (733)
+|.++
T Consensus 326 ~l~~N 330 (477)
T 2id5_A 326 ILDSN 330 (477)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 66554
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=6.4e-18 Score=194.82 Aligned_cols=295 Identities=19% Similarity=0.173 Sum_probs=183.6
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
..+++.+++.+. .+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 457788888873 3444444556788999999999998887666678889999999999998887777777888999999
Q ss_pred Eeeccccchhc----ccCCCCcEEEEcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 366 EITKCRVMRVS----IRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 366 ~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++++|.+..++ ..+++|+.|+|++|.+.. .+..+++|++|+++++ .+.... ...+++|+.|+++++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc
Confidence 99999877554 457888888888876653 3566788888888875 454432 3457788888888765
Q ss_pred CCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-
Q 004729 438 CVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL- 516 (733)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~- 516 (733)
++... ..++|+.|+++++..........++|+.|+++++ .+++. ..+..+++|+.|+|++|......+.
T Consensus 204 -l~~l~------~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 204 -LSTLA------IPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp -CSEEE------CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred -ccccc------CCchhheeeccCCcccccccccCCCCCEEECCCC-CCCCC--hhhccCCCCCEEECCCCccCCCCHHH
Confidence 43311 3356777877776643333334467788888774 34442 3566677777777777743222222
Q ss_pred --CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCC
Q 004729 517 --ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCES 594 (733)
Q Consensus 517 --~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~ 594 (733)
.+++|+.|.+.++ .++.+.. .+..+++|+.|++++|.+..+.. .+ ..+++|+.|+|++| .
T Consensus 274 ~~~l~~L~~L~Ls~N-~l~~l~~--------~~~~l~~L~~L~Ls~N~l~~i~~----~~----~~l~~L~~L~L~~N-~ 335 (597)
T 3oja_B 274 FVKMQRLERLYISNN-RLVALNL--------YGQPIPTLKVLDLSHNHLLHVER----NQ----PQFDRLENLYLDHN-S 335 (597)
T ss_dssp GTTCSSCCEEECTTS-CCCEEEC--------SSSCCTTCCEEECCSSCCCCCGG----GH----HHHTTCSEEECCSS-C
T ss_pred hcCccCCCEEECCCC-CCCCCCc--------ccccCCCCcEEECCCCCCCccCc----cc----ccCCCCCEEECCCC-C
Confidence 2345555555443 1221110 12334555555555555543311 11 13445555555553 3
Q ss_pred CChhhhhhhcCCCCCCCccEEEeecC
Q 004729 595 LTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 595 lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
++... ...+++|+.|+|+++
T Consensus 336 l~~~~------~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 336 IVTLK------LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCCCC------CCTTCCCSEEECCSS
T ss_pred CCCcC------hhhcCCCCEEEeeCC
Confidence 33211 234455555555554
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=2.6e-17 Score=190.70 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=90.8
Q ss_pred CccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEe
Q 004729 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 367 (733)
+++.|++++ +.+.......|..+++|++|+|++|.++...+.++..+++|++|+|++|.+....+..+..+++|++|++
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 578888887 4555555556778888888888888887555566778888888888888877655566677888888888
Q ss_pred eccccchhc----ccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecC
Q 004729 368 TKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASC 410 (733)
Q Consensus 368 ~~~~~~~i~----~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c 410 (733)
++|.+..++ ..+++|+.|++++|.+. ..+..+++|++|+++++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 888776544 45778888888887653 34667788888888874
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.5e-17 Score=191.66 Aligned_cols=294 Identities=18% Similarity=0.190 Sum_probs=173.7
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 385 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L 385 (733)
.+.+++.|+++++.+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+..++ ..+++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3578899999998877555555677899999999999887666656778888999998888765443 345666666
Q ss_pred EEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccccccc
Q 004729 386 SLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (733)
Q Consensus 386 ~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (733)
+|++|.+..+ +..+++|++|+++++ .+.... +..+..+++|+.|+++++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N------------------------- 181 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSN------------------------- 181 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTS-------------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCC-------------------------
Confidence 6666554422 234555555555553 222211 112233444555555444
Q ss_pred CCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc-CCCCCcEEEeccccCCcccccccc
Q 004729 462 CPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAM 540 (733)
Q Consensus 462 ~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~l~~l~l~~~ 540 (733)
.........+++|+.|+++++ .+.. +...++|+.|++++|. +..++. ..++|+.|.+.++. ++...
T Consensus 182 -~l~~~~~~~l~~L~~L~l~~n-~l~~-----l~~~~~L~~L~ls~n~-l~~~~~~~~~~L~~L~L~~n~-l~~~~---- 248 (597)
T 3oja_B 182 -RLTHVDLSLIPSLFHANVSYN-LLST-----LAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNN-LTDTA---- 248 (597)
T ss_dssp -CCSBCCGGGCTTCSEEECCSS-CCSE-----EECCTTCSEEECCSSC-CCEEECSCCSCCCEEECCSSC-CCCCG----
T ss_pred -CCCCcChhhhhhhhhhhcccC-cccc-----ccCCchhheeeccCCc-ccccccccCCCCCEEECCCCC-CCCCh----
Confidence 322222334556666666653 2221 2334567777777664 333332 24566666666552 22211
Q ss_pred ccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecC
Q 004729 541 MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620 (733)
Q Consensus 541 ~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c 620 (733)
.+..+++|+.|++++|.+..+.+.. +..+++|+.|+|++ +.++... .....+++|+.|+|++|
T Consensus 249 -----~l~~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~Ls~-N~l~~l~----~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 249 -----WLLNYPGLVEVDLSYNELEKIMYHP-------FVKMQRLERLYISN-NRLVALN----LYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp -----GGGGCTTCSEEECCSSCCCEEESGG-------GTTCSSCCEEECTT-SCCCEEE----CSSSCCTTCCEEECCSS
T ss_pred -----hhccCCCCCEEECCCCccCCCCHHH-------hcCccCCCEEECCC-CCCCCCC----cccccCCCCcEEECCCC
Confidence 2566777777777777776653221 22566777888877 3555421 12245777777877776
Q ss_pred CCCccccc---cCCCccEEeccccccccccc-cccccccEEecccc
Q 004729 621 EGLTVVRF---CSTSLVSLSLVGCRAITALE-LKCPILEKVCLDGC 662 (733)
Q Consensus 621 ~~L~~~~~---~~~sL~~L~L~~c~~L~~l~-~~~p~L~~L~L~~c 662 (733)
.++.++. .+++|+.|+|++|. +..++ ..+++|++|+|+++
T Consensus 312 -~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 312 -HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred -CCCccCcccccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCC
Confidence 3444443 46677777777743 44443 35677777777774
No 48
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=3.2e-16 Score=166.92 Aligned_cols=247 Identities=16% Similarity=0.274 Sum_probs=141.0
Q ss_pred CCCEEEecCccCChHHHHhccCC--CCCcEEEEecCcCCcccccccccCCCccEEEeeccccc-----hhcccCCCCcEE
Q 004729 313 NLEALTLGRGQLGDAFFHALADC--SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM-----RVSIRCPQLEHL 385 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~--~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~-----~i~~~~~~L~~L 385 (733)
.++.++++++.+.... +..+ ++++.|++.++.+....+.+ ..+++|++|++++|.+. .....+++|++|
T Consensus 48 ~~~~l~l~~~~~~~~~---~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCHHH---HHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCHHH---HHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4788888888777433 3333 77888888888766554443 35677888887777543 123455666666
Q ss_pred EEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcc-cccccccc
Q 004729 386 SLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCA-NLRILNSS 460 (733)
Q Consensus 386 ~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~-~L~~L~L~ 460 (733)
+++++.+. ..+..+++|++|++++|..+++..+...+..+++|++|++++|..+++..+......++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66665433 23445667777777766556665566666666777777777663466655555555565 55555555
Q ss_pred cCCCCCcCCCCCCCccEEEeCCCCCCchHH-HHHhhCCCCcCEEEEecCCCCcccc----cCCCCCcEEEeccccCCccc
Q 004729 461 YCPNISLESVRLPMLTVLQLHSCEGITSAS-MAAISHSYMLEVLELDNCNLLTSVS----LELPRLQNIRLVHCRKFADL 535 (733)
Q Consensus 461 ~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~----~~l~~L~~L~L~~c~~l~~l 535 (733)
+|.. .+++.. ...+..+++|++|++++|..+++.. ..+++|+.|.+.+|..+.+.
T Consensus 204 ~~~~--------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 204 GYRK--------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp SCGG--------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred CCcc--------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 5430 233222 2223345555555555554332211 12455555555555444333
Q ss_pred cccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhh
Q 004729 536 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCE 601 (733)
Q Consensus 536 ~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~ 601 (733)
.+.. +.++++|+.|++.++ + ..+.+..+...++.|+ ++ |+.++...+.
T Consensus 264 ~~~~-------l~~~~~L~~L~l~~~-i------~~~~~~~l~~~l~~L~---l~-~n~l~~~~~~ 311 (336)
T 2ast_B 264 TLLE-------LGEIPTLKTLQVFGI-V------PDGTLQLLKEALPHLQ---IN-CSHFTTIARP 311 (336)
T ss_dssp GGGG-------GGGCTTCCEEECTTS-S------CTTCHHHHHHHSTTSE---ES-CCCSCCTTCS
T ss_pred HHHH-------HhcCCCCCEEeccCc-c------CHHHHHHHHhhCcceE---Ee-cccCccccCC
Confidence 3322 466788888888877 2 3345566655566655 54 4677765443
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=5.3e-16 Score=165.17 Aligned_cols=173 Identities=12% Similarity=0.122 Sum_probs=90.1
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc-CCCCcEEEEcCC
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRS 390 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~-~~~L~~L~L~~~ 390 (733)
++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++.. .++|++|+++++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 4666677766666644444566666777777766666654455555666666666666665544422 134555555444
Q ss_pred chHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH-HHHHHhcccccccccccCCCCCcCC
Q 004729 391 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL-REIALSCANLRILNSSYCPNISLES 469 (733)
Q Consensus 391 ~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l-~~l~~~~~~L~~L~L~~~~~l~~~~ 469 (733)
.+..+ . ...+..+++|+.|+++++. ++.... ...+..+ +|+.|+++++.......
T Consensus 134 ~i~~~---------------------~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 134 RIRKV---------------------P-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp CCCCC---------------------C-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred ccCcc---------------------C-HhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence 33211 1 1123344555555555543 221100 0001112 55666665554222222
Q ss_pred CCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 470 VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 470 ~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
.-.++|++|++++ +.+.......+..+++|++|++++|.
T Consensus 190 ~~~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 190 DLPETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp SSCSSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred cccCCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCc
Confidence 2235677777776 34555444456667777777777763
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=4.1e-15 Score=158.09 Aligned_cols=175 Identities=13% Similarity=0.094 Sum_probs=92.9
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
++|++|++++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+..++..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------------- 118 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK------------- 118 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-------------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-------------
Confidence 4555666666555543333455556666666666555544344444555555555555544433321
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhH-HHHHHHhcccccccccccCCCCCcCCC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES-LREIALSCANLRILNSSYCPNISLESV 470 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~-l~~l~~~~~~L~~L~L~~~~~l~~~~~ 470 (733)
.+++|++|+++++ .+.... ...+..+++|+.|+++++. ++... ....+..+++|+.|+++++........
T Consensus 119 ------~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 119 ------MPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189 (330)
T ss_dssp ------CCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred ------hcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCcc
Confidence 1245566666553 233221 2234556666666666655 32211 111223456666666666543222222
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
..++|++|+++++ .+.......+..+++|++|++++|.
T Consensus 190 ~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 190 LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC
T ss_pred ccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc
Confidence 3367888888774 4655555566777788888887764
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=1.4e-16 Score=168.65 Aligned_cols=158 Identities=19% Similarity=0.206 Sum_probs=101.3
Q ss_pred chhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc
Q 004729 299 AIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR 378 (733)
Q Consensus 299 ~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~ 378 (733)
.+.......+..+++|++|+|++|.++...+..+..+++|++|++++|.+....+ ...+++|++|++++|.+..+. .
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-~ 97 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-V 97 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-E
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-C
Confidence 3444444455577889999999998887777788889999999999988765443 567888999999888776555 3
Q ss_pred CCCCcEEEEcCCchHHH-hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccc
Q 004729 379 CPQLEHLSLKRSNMAQA-VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 457 (733)
Q Consensus 379 ~~~L~~L~L~~~~l~~~-~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L 457 (733)
.++|+.|++++|.+..+ ...+++|++|+++++ .+.... ...+..+++|+.|+++++. ++......+...+++|++|
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CTTCCEEECCSSCCSEEEECCCSSCEEEECCSS-CCCSGG-GBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEE
T ss_pred CCCcCEEECCCCccCCcCccccCCCCEEECCCC-CCCCcc-chhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEE
Confidence 47788888877766543 234666777777764 344321 1123345666777766655 4433222222234444444
Q ss_pred ccccC
Q 004729 458 NSSYC 462 (733)
Q Consensus 458 ~L~~~ 462 (733)
+++++
T Consensus 175 ~L~~N 179 (317)
T 3o53_A 175 NLQYN 179 (317)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 44443
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=2.7e-15 Score=159.66 Aligned_cols=167 Identities=13% Similarity=0.108 Sum_probs=96.2
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCch
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l 392 (733)
+++.++++++.+. .++..+ .++|++|+++++.+....+..+..+++|++|++++|.+..+.
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------- 94 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH---------------- 94 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC----------------
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC----------------
Confidence 5667777666554 222222 356777777766655444444555666666666665443221
Q ss_pred HHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC----CcC
Q 004729 393 AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI----SLE 468 (733)
Q Consensus 393 ~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l----~~~ 468 (733)
...+..+++|++|+++++ .+.... . ...++|++|+++++. ++... ...+..+++|+.|+++++... ...
T Consensus 95 ~~~~~~l~~L~~L~L~~n-~l~~l~--~--~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKN-HLVEIP--P--NLPSSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp GGGSTTCTTCCEEECCSS-CCCSCC--S--SCCTTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTT
T ss_pred HhHhhCcCCCCEEECCCC-cCCccC--c--cccccCCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCccccCCCCcc
Confidence 122445666777777664 333211 1 112689999999876 44321 122346899999999987642 222
Q ss_pred CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 469 SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 469 ~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
.....+|++|+++++ .++.... .-.++|++|++++|.
T Consensus 168 ~~~~l~L~~L~l~~n-~l~~l~~---~~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 168 AFDGLKLNYLRISEA-KLTGIPK---DLPETLNELHLDHNK 204 (332)
T ss_dssp SSCSCCCSCCBCCSS-BCSSCCS---SSCSSCSCCBCCSSC
T ss_pred cccCCccCEEECcCC-CCCccCc---cccCCCCEEECCCCc
Confidence 222228999999984 3443211 123689999999884
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.56 E-value=1.7e-14 Score=165.50 Aligned_cols=190 Identities=21% Similarity=0.167 Sum_probs=112.7
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
.+++.|+++++.++ .++..+. ++|++|++++|.+.. + ...+++|++|++++|.+..++..+++|+.|++++|.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-l---p~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-L---PALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-C---CCCCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-C---CCcCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCc
Confidence 46899999998887 4444332 789999999997763 2 236789999999999888887788888888888887
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR 471 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~ 471 (733)
+..+...+++|++|+++++ .+... ...+++|++|++++|. ++. ++ ...++|+.|.+.++...... ..
T Consensus 113 l~~l~~~l~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~Ls~N~-l~~--l~---~~~~~L~~L~L~~N~l~~l~-~~ 179 (622)
T 3g06_A 113 LTHLPALPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQ-LAS--LP---ALPSELCKLWAYNNQLTSLP-ML 179 (622)
T ss_dssp CCCCCCCCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCSCCC-CC
T ss_pred CCCCCCCCCCcCEEECCCC-CCCcC-----CCCCCCCCEEECcCCc-CCC--cC---CccCCCCEEECCCCCCCCCc-cc
Confidence 7665556777888888774 34431 1234677777777665 322 11 12345555555554422211 33
Q ss_pred CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEec
Q 004729 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLV 527 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~ 527 (733)
+++|+.|+++++ .++... ...++|+.|++++| .++.++..+++|+.|.+.
T Consensus 180 ~~~L~~L~Ls~N-~l~~l~----~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls 229 (622)
T 3g06_A 180 PSGLQELSVSDN-QLASLP----TLPSELYKLWAYNN-RLTSLPALPSGLKELIVS 229 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSSCCCCCTTCCEEECC
T ss_pred CCCCcEEECCCC-CCCCCC----CccchhhEEECcCC-cccccCCCCCCCCEEEcc
Confidence 455555555552 222210 11344555555544 233333333444444443
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.56 E-value=2e-13 Score=156.65 Aligned_cols=253 Identities=17% Similarity=0.128 Sum_probs=186.8
Q ss_pred CCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEE
Q 004729 426 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLEL 505 (733)
Q Consensus 426 ~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L 505 (733)
.+++.|+++++. ++. ++.. -.++|+.|+++++....... .+++|++|+++++ .++.... .+++|++|++
T Consensus 40 ~~l~~L~ls~n~-L~~--lp~~--l~~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT--LPDC--LPAHITTLVIPDNNLTSLPA-LPPELRTLEVSGN-QLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSC-CSC--CCSC--CCTTCSEEEECSCCCSCCCC-CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCC-cCc--cChh--hCCCCcEEEecCCCCCCCCC-cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEEC
Confidence 368999998876 432 1111 12689999999886332222 6789999999985 3543221 5788999999
Q ss_pred ecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCc
Q 004729 506 DNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ 585 (733)
Q Consensus 506 ~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~ 585 (733)
++| .++.++..+++|+.|.+.++. ++.+. ..+++|+.|++++|.++.+.. .+++|+
T Consensus 109 s~N-~l~~l~~~l~~L~~L~L~~N~-l~~lp-----------~~l~~L~~L~Ls~N~l~~l~~-----------~~~~L~ 164 (622)
T 3g06_A 109 FSN-PLTHLPALPSGLCKLWIFGNQ-LTSLP-----------VLPPGLQELSVSDNQLASLPA-----------LPSELC 164 (622)
T ss_dssp CSC-CCCCCCCCCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSSCCSCCCC-----------CCTTCC
T ss_pred cCC-cCCCCCCCCCCcCEEECCCCC-CCcCC-----------CCCCCCCEEECcCCcCCCcCC-----------ccCCCC
Confidence 988 466677677888888887652 33321 124889999999998876531 346899
Q ss_pred EEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCccEEeccccccccccccccccccEEeccccccc
Q 004729 586 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHI 665 (733)
Q Consensus 586 ~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~c~~L 665 (733)
.|++++ +.++. ++ ..+++|+.|++++| .++.++..+++|+.|+++++ .++.++..+++|++|+++++ .+
T Consensus 165 ~L~L~~-N~l~~-----l~--~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N-~L 233 (622)
T 3g06_A 165 KLWAYN-NQLTS-----LP--MLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGN-RL 233 (622)
T ss_dssp EEECCS-SCCSC-----CC--CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSS-CC
T ss_pred EEECCC-CCCCC-----Cc--ccCCCCcEEECCCC-CCCCCCCccchhhEEECcCC-cccccCCCCCCCCEEEccCC-cc
Confidence 999998 46664 22 45789999999887 57777777889999999984 67777777799999999984 67
Q ss_pred ccccccccCCcEEEecCCCCccccccCcccccEEEecCCCCCCcc---CCCCCCccEEeccCcc
Q 004729 666 ESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA---YINCPLLTSLDASFCR 726 (733)
Q Consensus 666 ~~~~~~~~~L~~L~L~~c~~L~~l~~~~~~L~~L~l~~c~~L~~~---~~~~p~L~~L~l~~C~ 726 (733)
+.+...+.+|+.|+++++ +|+.++....+|+.|++++|. |+.+ ..++++|+.|++++++
T Consensus 234 ~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 234 TSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 766555678999999998 588888866689999999975 3333 2378999999999886
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=9e-15 Score=157.00 Aligned_cols=258 Identities=14% Similarity=0.107 Sum_probs=120.0
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
++|++|++++|.++......+..+++|++|++++|.+....+..+..+++|++|++++|.+..++.
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------------- 117 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-------------- 117 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH--------------
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH--------------
Confidence 356666666666654333345566666666666665554434444455556666655554432221
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC---CcC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI---SLE 468 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l---~~~ 468 (733)
..+..+++|++|+++++ .+........+..+++|+.|+++++..++.... ..+..+++|++|+++++... +..
T Consensus 118 --~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 118 --SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp --HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred --hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHHH
Confidence 11333444444444442 222111001223344555555544421221110 11113455555555544311 122
Q ss_pred CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecc
Q 004729 469 SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 469 ~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
...+++|++|+++++ .+.......+..+++|++|++++|. ++..+.. .+. ...
T Consensus 194 l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~--~l~-----------------------~~~ 246 (353)
T 2z80_A 194 LKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTD-LDTFHFS--ELS-----------------------TGE 246 (353)
T ss_dssp TTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC-------------------------------
T ss_pred HhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCc-ccccccc--ccc-----------------------ccc
Confidence 335667777777763 3554444444556777777777663 2222110 000 012
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCC
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~ 621 (733)
.++.++.+++..+.+....+ ..+......+++|+.|++++| .++......| +.+++|+.|+|++++
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l---~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~---~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESL---FQVMKLLNQISGLLELEFSRN-QLKSVPDGIF---DRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHH---HHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC
T ss_pred ccchhhccccccccccCcch---hhhHHHHhcccCCCEEECCCC-CCCccCHHHH---hcCCCCCEEEeeCCC
Confidence 23444555555544432211 122233346777888888773 5653222212 456777777777764
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=4.7e-14 Score=149.85 Aligned_cols=264 Identities=17% Similarity=0.175 Sum_probs=152.8
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|+|++|.+....+..+..+++|++|++++|.+...... .+++|++|+
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELR 127 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEE
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh---hcccccEEE
Confidence 57899999884 45544445678899999999999999876677888999999999999987743222 237899999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCchH------HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSNMA------QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~l~------~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
+++|.+..+. ..+++|+.|+++++.+. ..+..+++|++|+++++ .+.... . ...++|+.|+++++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~--~--~~~~~L~~L~l~~n 202 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIP--Q--GLPPSLTELHLDGN 202 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCC--S--SCCTTCSEEECTTS
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCC--c--cccccCCEEECCCC
Confidence 9998765433 34566666666665442 12344555555555553 222111 0 01134455555444
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL 516 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~ 516 (733)
. ++... ......+++|++|++++ +.+.......+..+++|++|++++|. ++.+|.
T Consensus 203 ~-l~~~~----------------------~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~ 257 (330)
T 1xku_A 203 K-ITKVD----------------------AASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNK-LVKVPG 257 (330)
T ss_dssp C-CCEEC----------------------TGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSC-CSSCCT
T ss_pred c-CCccC----------------------HHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCCc-CccCCh
Confidence 3 22211 11222455666666666 33444433445566667777776663 344443
Q ss_pred C---CCCCcEEEeccccCCcccccccccccee-ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCC
Q 004729 517 E---LPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 592 (733)
Q Consensus 517 ~---l~~L~~L~L~~c~~l~~l~l~~~~L~~l-~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C 592 (733)
. +++|+.|.+.++. ++.+.... +... .....+.|+.+++.+|.+....+.. ..+..+++|+.++++++
T Consensus 258 ~l~~l~~L~~L~l~~N~-i~~~~~~~--f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~-----~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNN-ISAIGSND--FCPPGYNTKKASYSGVSLFSNPVQYWEIQP-----STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTTCSSCCEEECCSSC-CCCCCTTS--SSCSSCCTTSCCCSEEECCSSSSCGGGSCG-----GGGTTCCCGGGEEC---
T ss_pred hhccCCCcCEEECCCCc-CCccChhh--cCCcccccccccccceEeecCcccccccCc-----cccccccceeEEEeccc
Confidence 2 4566666665542 33222111 0000 0123467888899999886543221 12335678999999874
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.50 E-value=9.3e-15 Score=155.23 Aligned_cols=214 Identities=17% Similarity=0.210 Sum_probs=124.9
Q ss_pred hCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
..++++.|++.+.. +.. ++..+..+++|++|+|++|.+. .++..+..+++|++|+|++|.+. .++.....+++|++
T Consensus 79 ~~~~l~~L~L~~n~-l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSC-CSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCC-chh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 34678888887743 332 2334566788888888888777 56666777888888888888776 55555667788888
Q ss_pred EEeeccccch-hcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhH
Q 004729 365 LEITKCRVMR-VSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 443 (733)
Q Consensus 365 L~L~~~~~~~-i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~ 443 (733)
|++++|.... ++.. +....+ ...+..+++|++|+++++ .+.. ++..+..+++|+.|+++++. ++.
T Consensus 155 L~L~~n~~~~~~p~~---~~~~~~-----~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~N~-l~~-- 220 (328)
T 4fcg_A 155 LSIRACPELTELPEP---LASTDA-----SGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLKIRNSP-LSA-- 220 (328)
T ss_dssp EEEEEETTCCCCCSC---SEEEC------CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEEESSC-CCC--
T ss_pred EECCCCCCccccChh---Hhhccc-----hhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEEccCCC-CCc--
Confidence 8888765432 1111 111111 011234666677776664 3432 22335566777777777665 332
Q ss_pred HHHHHHhcccccccccccCCCC---CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC
Q 004729 444 LREIALSCANLRILNSSYCPNI---SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE 517 (733)
Q Consensus 444 l~~l~~~~~~L~~L~L~~~~~l---~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~ 517 (733)
+...+..+++|+.|++++|... +.....+++|++|++++|.... .....+..+++|++|+|++|..+..+|..
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 1111235566666666665422 2233456777777777754333 22234566677777777777666655543
No 58
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=1.4e-13 Score=149.53 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=23.4
Q ss_pred ccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecC
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~ 591 (733)
.++++|+.|++.+|.++... ..+..+...+++++.+.+..
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~----~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEED----DVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTS----HHHHHHHHHHHHHTCCEECC
T ss_pred hcCCCceEEEccCCcCCcch----hHHHHHHHHhhhcCcchhhh
Confidence 45788888888888876432 11334444455555555543
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.50 E-value=2e-15 Score=159.30 Aligned_cols=122 Identities=13% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCchhH--HHHHHhhcCCCCCEEEecC-ccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCcc
Q 004729 287 PNATEVNIYGAPAIHL--LVMKAVSLLRNLEALTLGR-GQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~--~~~~~l~~l~~L~~L~Ls~-~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (733)
.+++.|++++.. +.. ..+..+..+++|++|++++ +.+....+..+.++++|++|++++|.+...++..+..+++|+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777632 332 2334566777777777773 666555566667777777777777776655555566677777
Q ss_pred EEEeeccccch----hcccCCCCcEEEEcCCchH----HHhhCCC-CccEEEEec
Q 004729 364 RLEITKCRVMR----VSIRCPQLEHLSLKRSNMA----QAVLNCP-LLHLLDIAS 409 (733)
Q Consensus 364 ~L~L~~~~~~~----i~~~~~~L~~L~L~~~~l~----~~~~~~~-~L~~L~L~~ 409 (733)
+|++++|.+.. ....+++|++|++++|.+. ..+..++ +|++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 77777766541 1234555666666555443 1233343 555555554
No 60
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=2.3e-13 Score=147.82 Aligned_cols=180 Identities=19% Similarity=0.289 Sum_probs=90.1
Q ss_pred HHHhhCCCccEEEEcCCCchhHHHHHH----hhcCCCCCEEEecCccCC---hHHH-------HhccCCCCCcEEEEecC
Q 004729 281 DVCQRYPNATEVNIYGAPAIHLLVMKA----VSLLRNLEALTLGRGQLG---DAFF-------HALADCSMLKSLNVNDA 346 (733)
Q Consensus 281 ~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~l~~L~~L~Ls~~~i~---~~~~-------~~L~~~~~L~~L~L~~~ 346 (733)
..+...++++.|+++++ .+....... +..+++|++|+|+++.+. ...+ ..+..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 34455666777777664 333332222 446677777777665322 2222 22356677777777777
Q ss_pred cCCc----ccccccccCCCccEEEeeccccch-----hc---ccC---------CCCcEEEEcCCchH--------HHhh
Q 004729 347 TLGN----GVQEIPINHDQLRRLEITKCRVMR-----VS---IRC---------PQLEHLSLKRSNMA--------QAVL 397 (733)
Q Consensus 347 ~l~~----~~~~~~~~~~~L~~L~L~~~~~~~-----i~---~~~---------~~L~~L~L~~~~l~--------~~~~ 397 (733)
.+.. .++.....+++|++|++++|.+.. +. ..+ ++|+.|++++|.+. ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 6655 234444556666666666665431 11 111 55555555555432 1233
Q ss_pred CCCCccEEEEecCCCCChHHHHH----HHhcCCCCcEEeccCCCCCChhHHHHH---HHhcccccccccccCC
Q 004729 398 NCPLLHLLDIASCHKLSDAAIRL----AATSCPQLESLDMSNCSCVSDESLREI---ALSCANLRILNSSYCP 463 (733)
Q Consensus 398 ~~~~L~~L~L~~c~~l~~~~l~~----l~~~~~~L~~L~L~~~~~l~~~~l~~l---~~~~~~L~~L~L~~~~ 463 (733)
.+++|++|++++| .+.+.++.. .+..+++|+.|+|++|. +++.+...+ +..+++|++|++++|.
T Consensus 185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 4555666666554 344443222 22345556666665554 443332222 2233444444444443
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=148.10 Aligned_cols=222 Identities=14% Similarity=0.097 Sum_probs=164.7
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|++++|.++...+..+..+++|++|++++|.+..........+++|++|+
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 57999999884 34444444678899999999999999876667788999999999999998866666577899999999
Q ss_pred eeccccchhc-----ccCCCCcEEEEcCCc-hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 367 ITKCRVMRVS-----IRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 367 L~~~~~~~i~-----~~~~~L~~L~L~~~~-l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
+++|.+..++ ..+++|+.|++++|. +. ..+..+++|++|+++++ .+.... +..+..+++|++|+++++
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYE-PKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEEC-TTTTTTCSEEEEEEEECS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccC-HHHHhccccCCeecCCCC
Confidence 9999877654 368999999999873 33 34677899999999996 354321 234567889999999998
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCcCC------CCCCCccEEEeCCCCCCchHHH----HHhhCCCCcCEEEEe
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISLES------VRLPMLTVLQLHSCEGITSASM----AAISHSYMLEVLELD 506 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~------~~l~~L~~L~L~~c~~l~~~~~----~~l~~~~~L~~L~L~ 506 (733)
. ++. ........+++|+.|+++++....... ...+.++.+++.++ .+.+..+ ..+..+++|++|+++
T Consensus 209 ~-l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 209 Q-HIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp C-STT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred c-ccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECC
Confidence 7 443 233444568999999999876332211 13567888888884 4665433 345678889999998
Q ss_pred cCCCCcccc
Q 004729 507 NCNLLTSVS 515 (733)
Q Consensus 507 ~~~~l~~~~ 515 (733)
+|. ++.++
T Consensus 286 ~N~-l~~i~ 293 (353)
T 2z80_A 286 RNQ-LKSVP 293 (353)
T ss_dssp SSC-CCCCC
T ss_pred CCC-CCccC
Confidence 874 33433
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.46 E-value=1.9e-14 Score=151.86 Aligned_cols=245 Identities=17% Similarity=0.162 Sum_probs=147.9
Q ss_pred CCCCEEEecCccCCh--HHHHhccCCCCCcEEEEec-CcCCcccccccccCCCccEEEeeccccc-hh---cccCCCCcE
Q 004729 312 RNLEALTLGRGQLGD--AFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVM-RV---SIRCPQLEH 384 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~--~~~~~L~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~L~~~~~~-~i---~~~~~~L~~ 384 (733)
.++++|+|+++.+.. ..+..+..+++|++|++++ +.+...++..+..+++|++|++++|.+. .+ ...+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999987 6778889999999999995 7777777777788999999999998775 22 245677777
Q ss_pred EEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCC-CCcEEeccCCCCCChhHHHHHHHhccccccccc
Q 004729 385 LSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP-QLESLDMSNCSCVSDESLREIALSCANLRILNS 459 (733)
Q Consensus 385 L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~-~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L 459 (733)
|++++|.+. ..+..+++|++|+++++ .+... ++..+..++ +|+.|+++++. ++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~~L~~L~L~~N~-l~~------------------ 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGA-IPDSYGSFSKLFTSMTISRNR-LTG------------------ 188 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEE-CCGGGGCCCTTCCEEECCSSE-EEE------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCc-CCHHHhhhhhcCcEEECcCCe-eec------------------
Confidence 777776544 23455666666666653 23211 111223333 55555555543 111
Q ss_pred ccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccc
Q 004729 460 SYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRA 539 (733)
Q Consensus 460 ~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~ 539 (733)
.++.....++ |++|+++++ .+.......+..+++|+.|++++|......+.
T Consensus 189 ----~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------- 239 (313)
T 1ogq_A 189 ----KIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----------------------- 239 (313)
T ss_dssp ----ECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----------------------
T ss_pred ----cCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCceeeecCc-----------------------
Confidence 1111122233 777777773 45544445667788888888887742211111
Q ss_pred cccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeec
Q 004729 540 MMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 619 (733)
Q Consensus 540 ~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~ 619 (733)
+..+++|+.|++++|.++...+. ....+++|+.|++++| .++.. ++..+.+++|+.|++.+
T Consensus 240 -------~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~Ls~N-~l~~~----ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 240 -------VGLSKNLNGLDLRNNRIYGTLPQ-------GLTQLKFLHSLNVSFN-NLCGE----IPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp -------CCCCTTCCEEECCSSCCEECCCG-------GGGGCTTCCEEECCSS-EEEEE----CCCSTTGGGSCGGGTCS
T ss_pred -------ccccCCCCEEECcCCcccCcCCh-------HHhcCcCCCEEECcCC-ccccc----CCCCccccccChHHhcC
Confidence 23345666666666666533211 1224567777777773 55432 22235567777777777
Q ss_pred CCCCcc
Q 004729 620 CEGLTV 625 (733)
Q Consensus 620 c~~L~~ 625 (733)
++.+..
T Consensus 301 N~~lc~ 306 (313)
T 1ogq_A 301 NKCLCG 306 (313)
T ss_dssp SSEEES
T ss_pred CCCccC
Confidence 665544
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=2.1e-14 Score=152.52 Aligned_cols=219 Identities=22% Similarity=0.265 Sum_probs=140.0
Q ss_pred CCeeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEE
Q 004729 262 DFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSL 341 (733)
Q Consensus 262 ~lw~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L 341 (733)
.-.+.+++....+. .+...+..+++|+.|++++.. +. .++..+..+++|++|+|++|.+. .++..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAG-LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSC-CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCch--hcChhhhhCCCCCEEECCCCC-cc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 34466777665544 233334457899999999853 43 33456788999999999999998 667788999999999
Q ss_pred EEecCcCCcccccccc---------cCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCC
Q 004729 342 NVNDATLGNGVQEIPI---------NHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHK 412 (733)
Q Consensus 342 ~L~~~~l~~~~~~~~~---------~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~ 412 (733)
++++|.....++.... .+++|++|++++|.+..++ ..+..+++|++|+++++ .
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-----------------~~l~~l~~L~~L~L~~N-~ 217 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-----------------ASIANLQNLKSLKIRNS-P 217 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-----------------GGGGGCTTCCEEEEESS-C
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-----------------HhhcCCCCCCEEEccCC-C
Confidence 9999876655544332 3777777777777654332 22344556666666654 2
Q ss_pred CChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCC---CcCCCCCCCccEEEeCCCCCCchH
Q 004729 413 LSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI---SLESVRLPMLTVLQLHSCEGITSA 489 (733)
Q Consensus 413 l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l---~~~~~~l~~L~~L~L~~c~~l~~~ 489 (733)
+.. ++..+..+++|+.|++++|.... . ++..+..+++|+.|++++|... +.....+++|++|++++|.... .
T Consensus 218 l~~--l~~~l~~l~~L~~L~Ls~n~~~~-~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~ 292 (328)
T 4fcg_A 218 LSA--LGPAIHHLPKLEELDLRGCTALR-N-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-R 292 (328)
T ss_dssp CCC--CCGGGGGCTTCCEEECTTCTTCC-B-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-C
T ss_pred CCc--CchhhccCCCCCEEECcCCcchh-h-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-h
Confidence 332 11234556667777776655221 1 1112225667777777776532 2334467888888888865443 3
Q ss_pred HHHHhhCCCCcCEEEEecC
Q 004729 490 SMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 490 ~~~~l~~~~~L~~L~L~~~ 508 (733)
.+..++.+++|+.+++..+
T Consensus 293 iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCGGGGGSCTTCEEECCGG
T ss_pred ccHHHhhccCceEEeCCHH
Confidence 3456778888888877653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.46 E-value=8.4e-15 Score=154.81 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=109.1
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchh--cccCCCCcEEEEcCCc
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV--SIRCPQLEHLSLKRSN 391 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i--~~~~~~L~~L~L~~~~ 391 (733)
++.++++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+... ...+++|+.|++++|.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc
Confidence 44555666666655555556788999999999998877666778899999999999876533 2456677777777665
Q ss_pred hHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCC
Q 004729 392 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR 471 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~ 471 (733)
+..+. ..++|++|+++++ .+.... ...+++|+.|+++++. ++.. .......
T Consensus 92 l~~l~-~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N~-l~~~----------------------~~~~~~~ 142 (317)
T 3o53_A 92 VQELL-VGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNK-ITML----------------------RDLDEGC 142 (317)
T ss_dssp EEEEE-ECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSSC-CCSG----------------------GGBCTGG
T ss_pred ccccc-CCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCCC-CCCc----------------------cchhhhc
Confidence 54322 3355666666553 233221 1123445555554443 2111 0112234
Q ss_pred CCCccEEEeCCCCCCchHHHHHh-hCCCCcCEEEEecCCCCcccccC--CCCCcEEEecc
Q 004729 472 LPMLTVLQLHSCEGITSASMAAI-SHSYMLEVLELDNCNLLTSVSLE--LPRLQNIRLVH 528 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~~~--l~~L~~L~L~~ 528 (733)
+++|++|+++++ .+.......+ ..+++|++|++++|. ++.++.. +++|+.|++.+
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCS
T ss_pred cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCC
Confidence 677888888773 4555444444 357888888888874 3333221 34444444443
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.46 E-value=8.3e-14 Score=154.74 Aligned_cols=217 Identities=17% Similarity=0.163 Sum_probs=126.4
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
+++++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|+|++|.+..++ ..+++|+.|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56788888888777655666777888888888888776655556667778888888877765443 34667777777
Q ss_pred cCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
++|.+.. .+..+++|++|++++|..+.... ...+..+++|+.|+++++. ++..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~--------------------- 211 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCN-IKDM--------------------- 211 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSC-CSSC---------------------
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCc-cccc---------------------
Confidence 7665543 24456677777776655444322 1123445666666666554 2211
Q ss_pred CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccc
Q 004729 464 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRA 539 (733)
Q Consensus 464 ~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~ 539 (733)
.....+++|++|++++ +.+.......+..+++|+.|++++|.. ..++. .+++|+.|++.++ .++.+...
T Consensus 212 ---~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~- 284 (452)
T 3zyi_A 212 ---PNLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHN-NLSSLPHD- 284 (452)
T ss_dssp ---CCCTTCTTCCEEECTT-SCCSEECGGGGTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSS-CCSCCCTT-
T ss_pred ---ccccccccccEEECcC-CcCcccCcccccCccCCCEEEeCCCcC-ceECHHHhcCCCCCCEEECCCC-cCCccChH-
Confidence 0122455666666665 334444444555666666666666532 22221 2455555555544 22222111
Q ss_pred cccceeecccCcCCceeeeccCccc
Q 004729 540 MMLSSIMVSNCAALHRINITSNSLQ 564 (733)
Q Consensus 540 ~~L~~l~l~~c~~L~~L~l~~n~L~ 564 (733)
.+..+++|+.|++.+|.+.
T Consensus 285 ------~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 ------LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ------SSTTCTTCCEEECCSSCEE
T ss_pred ------HhccccCCCEEEccCCCcC
Confidence 1455677777777777654
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.45 E-value=8e-14 Score=154.30 Aligned_cols=217 Identities=18% Similarity=0.215 Sum_probs=119.6
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++++.|+|++|.+.......+..+++|++|+|++|.+.......+..+++|++|+|++|.+..++ ..+++|+.|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46777777777776555556667777777777777766555455566777777777777665443 34566666666
Q ss_pred cCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCC
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
++|.+.. .+..+++|++|+++++..+.... ...+..+++|+.|+++++. ++.. +
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~--~------------------ 201 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCN-LREI--P------------------ 201 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSC-CSSC--C------------------
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCc-Cccc--c------------------
Confidence 6665542 24556677777776655443322 1123456666666666654 2211 0
Q ss_pred CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccc
Q 004729 464 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRA 539 (733)
Q Consensus 464 ~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~ 539 (733)
....+++|++|+++++ .++......+..+++|++|++++|. +..++. .+++|+.|++.++ .++.+...
T Consensus 202 ----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~- 273 (440)
T 3zyj_A 202 ----NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHD- 273 (440)
T ss_dssp ----CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTT-
T ss_pred ----ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChh-
Confidence 1223455555555552 3444433445555556666665553 222221 1345555555443 22222111
Q ss_pred cccceeecccCcCCceeeeccCccc
Q 004729 540 MMLSSIMVSNCAALHRINITSNSLQ 564 (733)
Q Consensus 540 ~~L~~l~l~~c~~L~~L~l~~n~L~ 564 (733)
.+..+++|+.|++.+|.+.
T Consensus 274 ------~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 ------LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ------TTSSCTTCCEEECCSSCEE
T ss_pred ------HhccccCCCEEEcCCCCcc
Confidence 1455677777777777664
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.43 E-value=7.9e-14 Score=154.95 Aligned_cols=215 Identities=20% Similarity=0.185 Sum_probs=153.0
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ ..+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 5789999988 445555556778999999999999999877677888999999999999998876667778899999999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCc-hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~-l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
+++|.+..++ ..+++|+.|+++++. +. ..+..+++|++|+++++ .+.... .+..+++|+.|+++++.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP---NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC---CCTTCTTCCEEECTTSC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc---cccccccccEEECcCCc
Confidence 9999987654 468999999999843 22 23668999999999996 455432 24567889999999876
Q ss_pred CCChhHHHHHHHhcccccccccccCCCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 438 CVSDESLREIALSCANLRILNSSYCPNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
++..... .+..+++|+.|+++++.... .....+++|++|++++ +.++......+..+++|+.|+|++|.
T Consensus 230 -l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 230 -FPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -CSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -CcccCcc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 4432221 22355677777776654221 1223456666666666 34444443444555666666666553
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.43 E-value=8.9e-14 Score=153.93 Aligned_cols=215 Identities=20% Similarity=0.207 Sum_probs=153.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 57899999884 45555556678999999999999999877677888999999999999998876666778899999999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCc-hH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~-l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
+++|.+..++ ..+++|+.|+++++. +. ..+..+++|++|+++++ .+.... .+..+++|+.|+++++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP---NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC---CCTTCSSCCEEECTTSC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc---ccCCCcccCEEECCCCc
Confidence 9999887554 468999999999843 22 24678999999999996 455332 24567889999998876
Q ss_pred CCChhHHHHHHHhcccccccccccCCCCC---cCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 438 CVSDESLREIALSCANLRILNSSYCPNIS---LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~~l~---~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
++..... .+..+++|+.|+++++.... .....+++|++|+|++ +.++......+..+++|+.|+|++|.
T Consensus 219 -l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 219 -LSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CCEECTT-TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -cCccChh-hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 5432211 22255677777776654221 1223556666666666 34554444445556666666666654
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=7.5e-14 Score=156.48 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=125.1
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcC
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 389 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~ 389 (733)
.+++|++|+|++|.+....+..+..+++|++|+|++|.+....+ +..+++|++|++++|.+..++. .++|+.|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-~~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-GPSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-CTTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-CCCcCEEECcC
Confidence 34588999999888887666778888999999999888775444 6678889999998887766553 37888888888
Q ss_pred CchHHH-hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-
Q 004729 390 SNMAQA-VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL- 467 (733)
Q Consensus 390 ~~l~~~-~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~- 467 (733)
|.+..+ ...+++|+.|+++++ .+.... +..+..+++|+.|+++++. ++......+...+++|+.|+++++.....
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANN-KITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSS-CCCSGG-GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CcCCCCCccccCCCCEEECCCC-CCCCCC-chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 776543 335678888888875 344321 2233456788888888776 55444444433566777777776652221
Q ss_pred CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecC
Q 004729 468 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (733)
Q Consensus 468 ~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~ 508 (733)
....+++|+.|+++++ .++.... .+..+++|+.|++++|
T Consensus 186 ~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNN 224 (487)
T ss_dssp CCCCCTTCCEEECCSS-CCCEECG-GGGGGTTCSEEECTTS
T ss_pred ccccCCCCCEEECCCC-CCCCCCH-hHcCCCCccEEEecCC
Confidence 1224666666666663 3443322 2445566666666665
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=2.5e-13 Score=146.22 Aligned_cols=131 Identities=17% Similarity=0.189 Sum_probs=60.5
Q ss_pred HHHHHhhcCCCCCEEEecCccCChHHH----HhccCCC-CCcEEEEecCcCCccccccccc-----CCCccEEEeecccc
Q 004729 303 LVMKAVSLLRNLEALTLGRGQLGDAFF----HALADCS-MLKSLNVNDATLGNGVQEIPIN-----HDQLRRLEITKCRV 372 (733)
Q Consensus 303 ~~~~~l~~l~~L~~L~Ls~~~i~~~~~----~~L~~~~-~L~~L~L~~~~l~~~~~~~~~~-----~~~L~~L~L~~~~~ 372 (733)
..+..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+.......... +++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 333334444556666666666654433 4555565 6666666666555432221111 14555555555433
Q ss_pred chhcccCCCCcEEEEcCCchHHHhhCC-CCccEEEEecCCCCChHHH---HHHHhc-CCCCcEEeccCCCCCChhHHHHH
Q 004729 373 MRVSIRCPQLEHLSLKRSNMAQAVLNC-PLLHLLDIASCHKLSDAAI---RLAATS-CPQLESLDMSNCSCVSDESLREI 447 (733)
Q Consensus 373 ~~i~~~~~~L~~L~L~~~~l~~~~~~~-~~L~~L~L~~c~~l~~~~l---~~l~~~-~~~L~~L~L~~~~~l~~~~l~~l 447 (733)
..... ..+...+..+ ++|++|++++| .+++... ...+.. +.+|++|++++|. +++.+...+
T Consensus 93 ~~~~~------------~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l 158 (362)
T 3goz_A 93 SYKSS------------DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDEL 158 (362)
T ss_dssp GGSCH------------HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHH
T ss_pred ChHHH------------HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHH
Confidence 21100 0011123333 55666666654 2333322 222333 2466666666665 554444333
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=1.6e-13 Score=144.09 Aligned_cols=220 Identities=23% Similarity=0.256 Sum_probs=107.6
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcc--cccccccCCCccEEEeeccccchhc---ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNG--VQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~~~~~~i~---~~~~~L~~L~ 386 (733)
++|++|+++++.++......+..+++|++|++++|.+... .+.....+++|++|++++|.+..++ ..+++|+.|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4566666666666533333345666666666666655421 1222334566666666666544332 2345555555
Q ss_pred EcCCchHH-----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccccccc
Q 004729 387 LKRSNMAQ-----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (733)
Q Consensus 387 L~~~~l~~-----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (733)
++++.+.. .+..+++|++|+++++. +... ....+..+++|+.|+++++. ++...
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~------------------ 166 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENF------------------ 166 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCE-EGGGE------------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCc-ccccc------------------
Confidence 55543321 23344455555554431 2111 11122334444444444443 21100
Q ss_pred CCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccc
Q 004729 462 CPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNL 537 (733)
Q Consensus 462 ~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l 537 (733)
++.....+++|++|+++++ .++......+..+++|++|++++|. ++.++. .+++|+.|++.++. ++....
T Consensus 167 ---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 240 (306)
T 2z66_A 167 ---LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKK 240 (306)
T ss_dssp ---ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSS
T ss_pred ---chhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCH
Confidence 1222335566666666663 3544444455566667777776664 232221 24566666665542 222111
Q ss_pred cccccceeecccC-cCCceeeeccCcccc
Q 004729 538 RAMMLSSIMVSNC-AALHRINITSNSLQK 565 (733)
Q Consensus 538 ~~~~L~~l~l~~c-~~L~~L~l~~n~L~~ 565 (733)
. .+..+ ++|+.|++.+|.+..
T Consensus 241 ~-------~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 241 Q-------ELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp S-------SCCCCCTTCCEEECTTCCEEC
T ss_pred H-------HHHhhhccCCEEEccCCCeec
Confidence 1 14455 378888888888764
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.38 E-value=4.5e-13 Score=139.11 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=106.8
Q ss_pred CCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccc-cchh----cccCCCCcEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR-VMRV----SIRCPQLEHL 385 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~-~~~i----~~~~~~L~~L 385 (733)
.++|++|+++++.++......+..+++|++|++++|.+....+..+..+++|++|++++|. +..+ ...+++|+.|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3567777777776665444556667777777777776655444455566777777777665 3332 2345666666
Q ss_pred EEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccccccccc
Q 004729 386 SLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (733)
Q Consensus 386 ~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (733)
+++++.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++. ++.... ..+..+++|++|++++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGNR-ISSVPE-RAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccC-HhHhccCCCccEEECCCCc-ccccCH-HHhcCccccCEEECCC
Confidence 6666554322 445666666666664 233211 1123456667777776654 332111 1112455666666655
Q ss_pred CCCC---CcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 462 CPNI---SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 462 ~~~l---~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
+... +.....+++|++|++++ +.++......+..+++|+.|++++|.
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcccccCHhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 5421 12223456666666666 34555444555666666666666654
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.38 E-value=7e-14 Score=146.82 Aligned_cols=172 Identities=18% Similarity=0.178 Sum_probs=121.3
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChH--HHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA--FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~--~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
++++.|++++. .+.......+..+++|++|+|++|.+... .+..+..+++|++|++++|.+.. ++.....+++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCE
Confidence 57999999884 34444334467899999999999988743 13445578999999999998764 3444668999999
Q ss_pred EEeeccccchh-----cccCCCCcEEEEcCCchH----HHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccC
Q 004729 365 LEITKCRVMRV-----SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSN 435 (733)
Q Consensus 365 L~L~~~~~~~i-----~~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~ 435 (733)
|++++|.+..+ ...+++|+.|+++++.+. ..+..+++|++|+++++ .+....++..+..+++|+.|++++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCC
Confidence 99999987644 356899999999998765 33667899999999985 344322334456778899999988
Q ss_pred CCCCChhHHHHHHHhcccccccccccCC
Q 004729 436 CSCVSDESLREIALSCANLRILNSSYCP 463 (733)
Q Consensus 436 ~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (733)
+. ++..... .+..+++|++|+++++.
T Consensus 185 n~-l~~~~~~-~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 185 CQ-LEQLSPT-AFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp SC-CCEECTT-TTTTCTTCCEEECTTSC
T ss_pred CC-cCCcCHH-HhcCCCCCCEEECCCCc
Confidence 76 4432111 11234555555555543
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=2.8e-12 Score=138.09 Aligned_cols=229 Identities=15% Similarity=0.118 Sum_probs=144.2
Q ss_pred HHHHHHhhCCCccEEEEcCCCchhHHHH----HHhhcCC-CCCEEEecCccCChHHHHhccC----C-CCCcEEEEecCc
Q 004729 278 QFEDVCQRYPNATEVNIYGAPAIHLLVM----KAVSLLR-NLEALTLGRGQLGDAFFHALAD----C-SMLKSLNVNDAT 347 (733)
Q Consensus 278 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~----~~l~~l~-~L~~L~Ls~~~i~~~~~~~L~~----~-~~L~~L~L~~~~ 347 (733)
.+..+.....+++.|+++++. +..... ..+..++ +|++|+|++|.+++..+..+.. . ++|++|+|++|.
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 345555666679999999854 444333 6677888 8999999999988655554444 3 999999999999
Q ss_pred CCccccc----ccccC-CCccEEEeeccccchhcc--------c-CCCCcEEEEcCCchH-----H---HhhCCC-CccE
Q 004729 348 LGNGVQE----IPINH-DQLRRLEITKCRVMRVSI--------R-CPQLEHLSLKRSNMA-----Q---AVLNCP-LLHL 404 (733)
Q Consensus 348 l~~~~~~----~~~~~-~~L~~L~L~~~~~~~i~~--------~-~~~L~~L~L~~~~l~-----~---~~~~~~-~L~~ 404 (733)
+...... ....+ ++|++|++++|.+..... . +++|++|+|++|.+. . .+..++ +|++
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 8754433 23334 899999999998754331 2 358888888887665 2 234454 8888
Q ss_pred EEEecCCCCChH---HHHHHHhcC-CCCcEEeccCCCCCChhHHHHHHH---h-cccccccccccCCCCCc-------CC
Q 004729 405 LDIASCHKLSDA---AIRLAATSC-PQLESLDMSNCSCVSDESLREIAL---S-CANLRILNSSYCPNISL-------ES 469 (733)
Q Consensus 405 L~L~~c~~l~~~---~l~~l~~~~-~~L~~L~L~~~~~l~~~~l~~l~~---~-~~~L~~L~L~~~~~l~~-------~~ 469 (733)
|++++| .+++. .+...+..+ ++|+.|+++++. +++.+...+.. . .++|++|+++++..-.. ..
T Consensus 172 L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 172 LNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp EECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred eeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 888886 34433 334445556 488888888876 66544443332 2 34777777776642211 11
Q ss_pred CCCCCccEEEeCCCC--CCchHHHHHh----hCCCCcCEEEEecCC
Q 004729 470 VRLPMLTVLQLHSCE--GITSASMAAI----SHSYMLEVLELDNCN 509 (733)
Q Consensus 470 ~~l~~L~~L~L~~c~--~l~~~~~~~l----~~~~~L~~L~L~~~~ 509 (733)
..+++|++|++++|. .+++.....+ ..+++|+.|++++|.
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 245666777666642 2444433332 234555566666554
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=7.8e-13 Score=139.31 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=71.5
Q ss_pred cCCCCCEEEecCccCChHHHHhc--cCCCCCcEEEEecCcCCcccccccccC-----CCccEEEeeccccchhcccCCCC
Q 004729 310 LLRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQEIPINH-----DQLRRLEITKCRVMRVSIRCPQL 382 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L--~~~~~L~~L~L~~~~l~~~~~~~~~~~-----~~L~~L~L~~~~~~~i~~~~~~L 382 (733)
.+++|++|+|++|.+....+..+ ..+++|++|++++|.+... +.....+ ++|++|++++|.+..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~------ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS------ 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch------
Confidence 45566666666665554444333 4556666666666555433 2222222 44555555544432221
Q ss_pred cEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHH--hcCCCCcEEeccCCCCCCh--hHHHHHHHhcccccccc
Q 004729 383 EHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAA--TSCPQLESLDMSNCSCVSD--ESLREIALSCANLRILN 458 (733)
Q Consensus 383 ~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~--~~~~~L~~L~L~~~~~l~~--~~l~~l~~~~~~L~~L~ 458 (733)
...+..+++|++|+++++.-.....+.... ..+++|++|+++++. ++. .....++..+++|+.|+
T Consensus 166 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 166 ----------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp ----------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEE
T ss_pred ----------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEE
Confidence 022445677777777775322222232222 567888888888876 542 22334444567777777
Q ss_pred cccCC
Q 004729 459 SSYCP 463 (733)
Q Consensus 459 L~~~~ 463 (733)
++++.
T Consensus 235 Ls~N~ 239 (312)
T 1wwl_A 235 LSHNS 239 (312)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 77665
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.34 E-value=6.1e-13 Score=137.40 Aligned_cols=194 Identities=15% Similarity=0.112 Sum_probs=121.0
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|++++|.++......+..+++|++|++++|.+.......+..+++|++|++++|.+..+. ..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35777777777666544445666777777777777665544445556677777777777655333 45667777777
Q ss_pred cCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhccccc----cccc
Q 004729 388 KRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR----ILNS 459 (733)
Q Consensus 388 ~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~----~L~L 459 (733)
.++.+..+ +..+++|++|+++++ .+....++..+..+++|+.|+++++. ++......+ ..+++|+ +|++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL-RVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGG-HHHHTCTTCCEEEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHh-hhhhhccccceeeec
Confidence 77655432 556788888888874 45443333456678899999998876 443211111 1334555 6677
Q ss_pred ccCCC--CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 460 SYCPN--ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 460 ~~~~~--l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
+++.. +........+|++|+++++ .++......+..+++|++|++++|.
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 66652 2233334557888888874 4655544455667788888887764
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=128.82 Aligned_cols=220 Identities=18% Similarity=0.167 Sum_probs=127.6
Q ss_pred CcEEeccCCCCCChhHHHHHHH--hcccccccccccCCC---CCcCC--CCCCCccEEEeCCCCCCch----HHHHHhhC
Q 004729 428 LESLDMSNCSCVSDESLREIAL--SCANLRILNSSYCPN---ISLES--VRLPMLTVLQLHSCEGITS----ASMAAISH 496 (733)
Q Consensus 428 L~~L~L~~~~~l~~~~l~~l~~--~~~~L~~L~L~~~~~---l~~~~--~~l~~L~~L~L~~c~~l~~----~~~~~l~~ 496 (733)
++.|.+.++. +++..+..+.. .+++|++|+++++.. .+... ..+++|++|+++++ .+.. .....+..
T Consensus 66 l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhh
Confidence 4444444443 33333333221 234455555555441 11222 45677777777774 3443 12234456
Q ss_pred CCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccc
Q 004729 497 SYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQE 572 (733)
Q Consensus 497 ~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~ 572 (733)
+++|++|++++|.. ..++. .+++|+.|++.++.-.....+.. ...+..+++|+.|++++|.++.+..
T Consensus 144 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~---- 214 (310)
T 4glp_A 144 KPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----ALCPHKFPAIQNLALRNTGMETPTG---- 214 (310)
T ss_dssp CSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----TSCTTSSCCCCSCBCCSSCCCCHHH----
T ss_pred ccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhH----HHhhhcCCCCCEEECCCCCCCchHH----
Confidence 78888888888754 33332 35777777777664322211111 1123577889999999998865421
Q ss_pred cHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-cCCCccEEeccccccccccc--c
Q 004729 573 NLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTSLVSLSLVGCRAITALE--L 649 (733)
Q Consensus 573 ~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-~~~sL~~L~L~~c~~L~~l~--~ 649 (733)
....+...+++|+.|++++ +.+++..+..+.....+++|++|+|+++ .++.++. .+++|+.|+++++ .|+.++ .
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~~ 291 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSN-RLNRAPQPD 291 (310)
T ss_dssp HHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSC-CCCSCCCTT
T ss_pred HHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCC-cCCCCchhh
Confidence 1222445788999999999 5777654333433334479999999887 4666654 3467888888774 455433 3
Q ss_pred ccccccEEeccc
Q 004729 650 KCPILEKVCLDG 661 (733)
Q Consensus 650 ~~p~L~~L~L~~ 661 (733)
.+++|++|++++
T Consensus 292 ~l~~L~~L~L~~ 303 (310)
T 4glp_A 292 ELPEVDNLTLDG 303 (310)
T ss_dssp SCCCCSCEECSS
T ss_pred hCCCccEEECcC
Confidence 567777777776
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.31 E-value=2.2e-12 Score=135.84 Aligned_cols=204 Identities=18% Similarity=0.116 Sum_probs=123.3
Q ss_pred hCCCccEEEEcCCCchhHHHHHHh--hcCCCCCEEEecCccCChHHHHhccCC-----CCCcEEEEecCcCCcccccccc
Q 004729 285 RYPNATEVNIYGAPAIHLLVMKAV--SLLRNLEALTLGRGQLGDAFFHALADC-----SMLKSLNVNDATLGNGVQEIPI 357 (733)
Q Consensus 285 ~~~~L~~L~L~~~~~~~~~~~~~l--~~l~~L~~L~Ls~~~i~~~~~~~L~~~-----~~L~~L~L~~~~l~~~~~~~~~ 357 (733)
.+++++.|+++++. +....+..+ ..+++|++|+|++|.++.. +..+..+ ++|++|++++|.+....+..+.
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 57899999999843 333233333 6889999999999988864 3334433 9999999999998876666677
Q ss_pred cCCCccEEEeeccccchhcccCCCCcEEEEcCCchHHH--hhCCCCccEEEEecCCCCChH--HHHHHHhcCCCCcEEec
Q 004729 358 NHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQA--VLNCPLLHLLDIASCHKLSDA--AIRLAATSCPQLESLDM 433 (733)
Q Consensus 358 ~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~--~~~~~~L~~L~L~~c~~l~~~--~l~~l~~~~~~L~~L~L 433 (733)
.+++|++|++++|.+.... .+... +..+++|++|+++++ .+... ....++..+++|+.|++
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~--------------~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGER--------------GLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp CCSSCCEEECCSCTTCHHH--------------HHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred cCCCCCEEECCCCCcCcch--------------HHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEEC
Confidence 7888888888877642110 00111 145667777777764 34421 12344556778888888
Q ss_pred cCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 434 SNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
+++. ++..........+++|+.|+++++........-.++|++|++++ +.++... .+..+++|++|++++|.
T Consensus 236 s~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~-N~l~~~p--~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 236 SHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSY-NRLDRNP--SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCS-SCCCSCC--CTTTSCEEEEEECTTCT
T ss_pred CCCc-CCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCC-CCCCCCh--hHhhCCCCCEEeccCCC
Confidence 7776 43321001111345666666666542211111115677777776 3454432 15556666777766663
No 79
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.31 E-value=3.1e-13 Score=140.30 Aligned_cols=194 Identities=17% Similarity=0.129 Sum_probs=149.1
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCc-CCcccccccccCCCccE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRR 364 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~L~~ 364 (733)
.++++.|++++. .+.......+..+++|++|++++|.++...+..+..+++|++|++++|. +....+.....+++|++
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 457999999884 4444444567889999999999999987667788899999999999997 66555666778999999
Q ss_pred EEeeccccchh----cccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCC
Q 004729 365 LEITKCRVMRV----SIRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 365 L~L~~~~~~~i----~~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~ 436 (733)
|++.+|.+..+ ...+++|+.|+++++.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVP-ERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccC-HHHhcCccccCEEECCCC
Confidence 99999987655 35689999999999877643 567899999999995 455432 123567899999999998
Q ss_pred CCCChhHHHHHHHhcccccccccccCCCCCcC---CCCCCCccEEEeCCCC
Q 004729 437 SCVSDESLREIALSCANLRILNSSYCPNISLE---SVRLPMLTVLQLHSCE 484 (733)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~---~~~l~~L~~L~L~~c~ 484 (733)
. ++...... +..+++|+.|+++++...... ...+++|++|+++++.
T Consensus 188 ~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 188 R-VAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp C-CCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred c-ccccCHhH-ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 7 55432222 236789999999988633222 3478999999999854
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=2.6e-13 Score=152.09 Aligned_cols=216 Identities=19% Similarity=0.188 Sum_probs=163.4
Q ss_pred HHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCC
Q 004729 281 DVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHD 360 (733)
Q Consensus 281 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 360 (733)
.+....++|+.|+++++ .+....+..+..+++|++|+|++|.++...+ +..+++|++|+|++|.+.... ..+
T Consensus 28 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~ 99 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGP 99 (487)
T ss_dssp TTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECT
T ss_pred HhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCC
Confidence 33344558999999984 4555555678899999999999999875443 888999999999999766422 348
Q ss_pred CccEEEeeccccchhc-ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccC
Q 004729 361 QLRRLEITKCRVMRVS-IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSN 435 (733)
Q Consensus 361 ~L~~L~L~~~~~~~i~-~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~ 435 (733)
+|++|++++|.+..++ ..+++|+.|++++|.+... +..+++|++|+++++ .+.......+...+++|+.|++++
T Consensus 100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCC
Confidence 9999999999887554 4578999999999877644 467899999999995 566544444555789999999999
Q ss_pred CCCCChhHHHHHHHhcccccccccccCCC--CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCC
Q 004729 436 CSCVSDESLREIALSCANLRILNSSYCPN--ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 511 (733)
Q Consensus 436 ~~~l~~~~l~~l~~~~~~L~~L~L~~~~~--l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l 511 (733)
+. ++.. .... .+++|+.|+++++.. ++.....+++|+.|+++++ .+... ...+..+++|+.|++++|...
T Consensus 179 N~-l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NF-IYDV--KGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SC-CCEE--ECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEE-CTTCCCCTTCCEEECTTCCBC
T ss_pred Cc-cccc--cccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCccc-chhhccCCCCCEEEcCCCCCc
Confidence 87 5543 1111 478999999998873 2333457899999999994 45542 234667889999999988654
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=4.4e-12 Score=133.36 Aligned_cols=196 Identities=21% Similarity=0.240 Sum_probs=88.8
Q ss_pred CCCCCEEEecCccCChHHHHhc--cCCCCCcEEEEecCcCCcccc----cccccCCCccEEEeeccccchhcccCCCCcE
Q 004729 311 LRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQ----EIPINHDQLRRLEITKCRVMRVSIRCPQLEH 384 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L--~~~~~L~~L~L~~~~l~~~~~----~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~ 384 (733)
+++|++|++++|.+....+..+ ..+++|++|++++|.+..... .....+++|++|++++|.+..++.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~------- 162 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC------- 162 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-------
Confidence 3556677776666655444444 556667777777666554222 111245566666666655432221
Q ss_pred EEEcCCchHHHhhCCCCccEEEEecCCCCChHHHH--HHHhcCCCCcEEeccCCCCCCh--hHHHHHHHhcccccccccc
Q 004729 385 LSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIR--LAATSCPQLESLDMSNCSCVSD--ESLREIALSCANLRILNSS 460 (733)
Q Consensus 385 L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~--~l~~~~~~L~~L~L~~~~~l~~--~~l~~l~~~~~~L~~L~L~ 460 (733)
..+..+++|++|+++++.-.....+. .....+++|++|++++|. ++. .....+...+++|++|+++
T Consensus 163 ---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 163 ---------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp ---------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECT
T ss_pred ---------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECC
Confidence 11223344444444443211111111 111234455555555544 321 1111123344555555555
Q ss_pred cCCCCCc---CCCC---CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccc--cCCCCCcEEEecc
Q 004729 461 YCPNISL---ESVR---LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS--LELPRLQNIRLVH 528 (733)
Q Consensus 461 ~~~~l~~---~~~~---l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~--~~l~~L~~L~L~~ 528 (733)
++..... .... +++|++|+++++ .++.. ...+ .++|++|++++|. ++.++ ..+++|+.|.+.+
T Consensus 233 ~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~--~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 233 HNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PKGL--PAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp TSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CSCC--CSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSS
T ss_pred CCCCCccchhhHHhccCcCcCCEEECCCC-CCCch-hhhh--cCCCCEEECCCCc-CCCCchhhhCCCccEEECcC
Confidence 5442111 1122 256666666663 34421 1111 2567777776664 33322 2345555555543
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=1.1e-11 Score=130.16 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=91.1
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++.++. +... ..+..+++|++|++++|.+.+... +..+++|++|++++|.+... + ....+++|++|+
T Consensus 41 ~~L~~L~l~~~~-i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCC-ccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 456666665532 2221 134555666666666665553222 55556666666666554432 1 233445555555
Q ss_pred eeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHH
Q 004729 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 446 (733)
Q Consensus 367 L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~ 446 (733)
+++|.+..+. .+..+++|++|+++++ .+..... +..+++|+.|+++++. +++...
T Consensus 114 l~~n~l~~~~------------------~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-- 168 (308)
T 1h6u_A 114 LTSTQITDVT------------------PLAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNAQ-VSDLTP-- 168 (308)
T ss_dssp CTTSCCCCCG------------------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCGG--
T ss_pred CCCCCCCCch------------------hhcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCCc-CCCChh--
Confidence 5554432211 1344556666666554 2332211 4455666666666654 332111
Q ss_pred HHHhcccccccccccCCCCCcC-CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 447 IALSCANLRILNSSYCPNISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 447 l~~~~~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
...+++|+.|+++++...... ...+++|++|+++++ .+.+.. .+..+++|+.|++++|.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCe
Confidence 224455555555554321111 234566666666663 344333 25566666666666653
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.26 E-value=3.7e-11 Score=121.17 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=102.6
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecc
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
++|++|++++ +.++......+..+++|++|++++|..++.++. .+++|+.|.+.+|..++.+... .+.
T Consensus 31 ~~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-------~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-------ALK 102 (239)
T ss_dssp TTCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-------SEE
T ss_pred CcccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-------HhC
Confidence 4688888887 456665555677788888888888864665553 2567777777665555543321 145
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCc---EEeecCCCCCChhhhhhhcCCCCCCCcc-EEEeecCCCCc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ---EVDLTDCESLTNSVCEVFSDGGGCPMLK-SLVLDNCEGLT 624 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~---~L~Ls~C~~lt~~~~~~~~~~~~l~~L~-~L~L~~c~~L~ 624 (733)
.+++|+.|++.+|.++.+.. +..+++|+ .|++++++.++......| ..+++|+ .|+++++ .++
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~---------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~---~~l~~L~~~L~l~~n-~l~ 169 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD---------LTKVYSTDIFFILEITDNPYMTSIPVNAF---QGLCNETLTLKLYNN-GFT 169 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC---------CTTCCBCCSEEEEEEESCTTCCEECTTTT---TTTBSSEEEEECCSC-CCC
T ss_pred CCCCCCEEeCCCCCCccccc---------cccccccccccEEECCCCcchhhcCcccc---cchhcceeEEEcCCC-CCc
Confidence 67778888888877765421 12455665 888877546654433333 4577777 7777765 344
Q ss_pred cccc---cCCCccEEeccccccccccc----ccc-ccccEEeccc
Q 004729 625 VVRF---CSTSLVSLSLVGCRAITALE----LKC-PILEKVCLDG 661 (733)
Q Consensus 625 ~~~~---~~~sL~~L~L~~c~~L~~l~----~~~-p~L~~L~L~~ 661 (733)
.++. ..++|++|++++++.++.++ ..+ ++|++|++++
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 4432 23566666666654455443 134 5566666655
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=9.8e-12 Score=125.41 Aligned_cols=193 Identities=13% Similarity=0.092 Sum_probs=106.5
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCc-CCcccccccccCCCccEEEeec-cccchhc----ccCCCCcEEE
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRLEITK-CRVMRVS----IRCPQLEHLS 386 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~L~~L~L~~-~~~~~i~----~~~~~L~~L~ 386 (733)
+|++|+++++.++......+..+++|++|++++|. +.......+..+++|++|++++ +.+..++ ..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777765444456677777777777775 5544334455667777777776 5544332 2344444444
Q ss_pred EcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCc---EEeccCCCCCChhHHHHHHHhccccc-ccccccC
Q 004729 387 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLE---SLDMSNCSCVSDESLREIALSCANLR-ILNSSYC 462 (733)
Q Consensus 387 L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~---~L~L~~~~~l~~~~l~~l~~~~~~L~-~L~L~~~ 462 (733)
+++|.+..+ +. +..+++|+ .|+++++..++.... ..+..+++|+ .|+++++
T Consensus 112 l~~n~l~~l-----------------------p~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKMF-----------------------PD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEECCCSC-----------------------CC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC
T ss_pred CCCCCCccc-----------------------cc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC
Confidence 444433211 11 22334444 555555421222111 1112445565 6666554
Q ss_pred CC--CCcCCCCCCCccEEEeCCCCCCchHHHHHhhCC-CCcCEEEEecCCCCccccc-CCCCCcEEEeccccC
Q 004729 463 PN--ISLESVRLPMLTVLQLHSCEGITSASMAAISHS-YMLEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRK 531 (733)
Q Consensus 463 ~~--l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~~-~l~~L~~L~L~~c~~ 531 (733)
.. ++......++|++|++.++..++......+..+ ++|+.|++++|. ++.++. .+++|+.|.+.++..
T Consensus 167 ~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC--
T ss_pred CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccC
Confidence 32 222223336788888887534665555556677 888888888874 455554 377888887766543
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.19 E-value=2.4e-10 Score=122.23 Aligned_cols=199 Identities=18% Similarity=0.152 Sum_probs=125.8
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC----CCCCcEEEeccccCCccccccccccceeecc
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~----l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
+++++|+|++ +.++......++++++|++|+|++|.....++.. ++++..+.+..+.+++.+.-. .+.
T Consensus 30 ~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-------~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-------AFQ 101 (350)
T ss_dssp TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT-------SBC
T ss_pred CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch-------hhh
Confidence 5789999988 5677666566788899999999998766655532 455555555454444443211 256
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 628 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~ 628 (733)
.+++|+.|++.+|.++.+..... ....++..|++.+++.++......|. +....|+.|+++++ .++.++.
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~-------~~~~~l~~l~l~~~~~i~~l~~~~f~--~~~~~l~~L~L~~N-~i~~i~~ 171 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHK-------IHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLNKN-GIQEIHN 171 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTT-------CCBSSCEEEEEESCTTCCEECTTSST--TSBSSCEEEECCSS-CCCEECT
T ss_pred hccccccccccccccccCCchhh-------cccchhhhhhhccccccccccccchh--hcchhhhhhccccc-cccCCCh
Confidence 77888888888888876532211 13346778888777777654333331 22346778888775 4666543
Q ss_pred ---cCCCccEEecccccccccccc----ccccccEEecccccccccccc-cccCCcEEEecCCCCccccc
Q 004729 629 ---CSTSLVSLSLVGCRAITALEL----KCPILEKVCLDGCDHIESASF-VPVALQSLNLGICPKLSTLG 690 (733)
Q Consensus 629 ---~~~sL~~L~L~~c~~L~~l~~----~~p~L~~L~L~~c~~L~~~~~-~~~~L~~L~L~~c~~L~~l~ 690 (733)
...+|++|.+.+++.++.++. .+++|++|+|++ +.|+.+.. ...+|+.|.+..+.+++.+|
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChhhhccchHhhhccCCCcCcCC
Confidence 456677777777777776652 567777777777 34544322 12356666666666666665
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.16 E-value=5.4e-11 Score=124.93 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=111.1
Q ss_pred eeEEeeCCCCCCHHHHHHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEE
Q 004729 264 WRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNV 343 (733)
Q Consensus 264 w~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L 343 (733)
.+.+++....+.. +. .+..+++++.|+++++. +..... +..+++|++|++++|.+... ..+..+++|++|++
T Consensus 43 L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 43 ITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp CCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred cCEEEeeCCCccC--ch-hhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 3456666544432 11 25678999999999853 433322 78999999999999998753 46888999999999
Q ss_pred ecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHH
Q 004729 344 NDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLA 421 (733)
Q Consensus 344 ~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l 421 (733)
++|.+... +. ...+++|++|++++|.+..+. ..+++|+.|++++|.+ .+.. .
T Consensus 115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l---------------------~~~~--~- 168 (308)
T 1h6u_A 115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV---------------------SDLT--P- 168 (308)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC---------------------CCCG--G-
T ss_pred CCCCCCCc-hh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcC---------------------CCCh--h-
Confidence 99998753 32 568899999999998765433 2344555555544433 2211 1
Q ss_pred HhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCC
Q 004729 422 ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSC 483 (733)
Q Consensus 422 ~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c 483 (733)
+..+++|+.|+++++. +++... ...+++|++|+++++..... ....+++|+.|+++++
T Consensus 169 l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 LANLSKLTTLKADDNK-ISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred hcCCCCCCEEECCCCc-cCcChh---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 3344555555555544 222111 22445555555555442111 1235666777777663
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.13 E-value=5.1e-11 Score=122.53 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=40.5
Q ss_pred CCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcCCchHH----HhhCCCCccEEEEe
Q 004729 337 MLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIA 408 (733)
Q Consensus 337 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~ 408 (733)
+|++|+++++.+.......+..+++|++|++++|.+..++ ..+++|+.|+++++.+.. .+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 4455555544444333333344444555555444433222 223344444444433321 12344455555555
Q ss_pred cCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 409 SCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 409 ~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++ .+.... ...+..+++|+.|+++++.
T Consensus 118 ~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 118 RN-QLKSLP-PRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp SS-CCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CC-ccCeeC-HHHhCcCcCCCEEECCCCc
Confidence 42 222211 1122344555555555543
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.10 E-value=7.9e-10 Score=113.57 Aligned_cols=101 Identities=22% Similarity=0.126 Sum_probs=50.4
Q ss_pred ccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcccc
Q 004729 548 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 627 (733)
Q Consensus 548 ~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~ 627 (733)
..+++|+.|++.+|.++.+.... +..+++|+.|++++| .++......| ..+++|+.|+|+++ .++.++
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~ 173 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRV-------FDSLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYNN-QLKRVP 173 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTT-------TTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCC
T ss_pred ccccCCCEEECCCCccCeeCHHH-------hCcCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecCC-cCcEeC
Confidence 44556666666666655443211 124456666666663 4443322222 44566666666555 233332
Q ss_pred c----cCCCccEEecccccccccccc----ccccccEEeccc
Q 004729 628 F----CSTSLVSLSLVGCRAITALEL----KCPILEKVCLDG 661 (733)
Q Consensus 628 ~----~~~sL~~L~L~~c~~L~~l~~----~~p~L~~L~L~~ 661 (733)
. .+++|+.|+++++ .++.++. .+++|++|+|++
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 2 3455666666553 3443331 356666666655
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=5.9e-11 Score=122.38 Aligned_cols=191 Identities=17% Similarity=0.122 Sum_probs=141.6
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++. .+.......+..+++|++|++++|.+.......+..+++|++|++++|.+.......+..+++|++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46899999884 44444444677899999999999998866666788899999999999998876666778899999999
Q ss_pred eeccccchhc----ccCCCCcEEEEcCCchH-----HHhhCCCCccEEEEecCCCCChH---HHHHHHhcCCCCc-EEec
Q 004729 367 ITKCRVMRVS----IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLE-SLDM 433 (733)
Q Consensus 367 L~~~~~~~i~----~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~~---~l~~l~~~~~~L~-~L~L 433 (733)
+.+|.+..+. ..+++|+.|++++|.+. ..+..+++|++|+++++ .+... .+.. +..++.|. .|++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-l~~L~~l~l~L~l 184 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV-LHQMPLLNLSLDL 184 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHH-HHTCTTCCEEEEC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhh-hhhccccceeeec
Confidence 9999876543 46899999999998654 45778999999999996 45442 2222 23344444 8999
Q ss_pred cCCCCCChhHHHHHHHhcccccccccccCCCC--CcC-CCCCCCccEEEeCCC
Q 004729 434 SNCSCVSDESLREIALSCANLRILNSSYCPNI--SLE-SVRLPMLTVLQLHSC 483 (733)
Q Consensus 434 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l--~~~-~~~l~~L~~L~L~~c 483 (733)
+++. ++......+ ...+|+.|+++++... +.. ...+++|++|++++.
T Consensus 185 s~n~-l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 185 SLNP-MNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSSC-CCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCc-ccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 9876 443221111 3358999999988732 222 246899999999983
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.07 E-value=9e-10 Score=114.46 Aligned_cols=165 Identities=25% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc--CCCCCcEEEeccccCCccccccccccceeecccC
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 550 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~--~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c 550 (733)
++++.|++++ +.++......+..+++|++|++++|. ++.++. .+++|+.|++.+. .++.+. . .+..+
T Consensus 31 ~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N-~l~~l~--~------~~~~l 99 (290)
T 1p9a_G 31 KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHN-QLQSLP--L------LGQTL 99 (290)
T ss_dssp TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSS-CCSSCC--C------CTTTC
T ss_pred CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCC-cCCcCc--h------hhccC
Confidence 4555666655 33444444445556666666666553 333322 2455555555443 121111 0 13455
Q ss_pred cCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc--
Q 004729 551 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-- 628 (733)
Q Consensus 551 ~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-- 628 (733)
++|+.|++++|.++.+.... +..+++|+.|++++ +.++......| ..+++|+.|+|+++ .++.++.
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~-------~~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~ 167 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGA-------LRGLGELQELYLKG-NELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGL 167 (290)
T ss_dssp TTCCEEECCSSCCCCCCSST-------TTTCTTCCEEECTT-SCCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTT
T ss_pred CCCCEEECCCCcCcccCHHH-------HcCCCCCCEEECCC-CCCCccChhhc---ccccCCCEEECCCC-cCCccCHHH
Confidence 66666666666666543211 12345666666666 35543332222 34566666666665 3444432
Q ss_pred --cCCCccEEecccccccccccc---ccccccEEeccc
Q 004729 629 --CSTSLVSLSLVGCRAITALEL---KCPILEKVCLDG 661 (733)
Q Consensus 629 --~~~sL~~L~L~~c~~L~~l~~---~~p~L~~L~L~~ 661 (733)
.+++|+.|++++ +.|+.++. .+++|++|+|++
T Consensus 168 ~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 168 LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCS
T ss_pred hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCC
Confidence 355666666665 33444442 345566666665
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.04 E-value=3.5e-10 Score=120.97 Aligned_cols=217 Identities=15% Similarity=0.106 Sum_probs=140.7
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc-CCCCCCCccEE
Q 004729 400 PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL-ESVRLPMLTVL 478 (733)
Q Consensus 400 ~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L 478 (733)
+++++|+|+++ .++... ...+.++++|++|+|+++..... ++. ....+++|+++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~-----------------------i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQ-KGAFSGFGDLEKIEISQNDVLEV-----------------------IEADVFSNLPKLHEI 84 (350)
T ss_dssp TTCSEEEEESC-CCSEEC-TTSSTTCTTCCEEEEECCTTCCE-----------------------ECTTSBCSCTTCCEE
T ss_pred CCCCEEEccCC-cCCCcC-HHHHcCCCCCCEEECcCCCCCCc-----------------------cChhHhhcchhhhhh
Confidence 46777777773 454321 11244566666666666541110 111 11245666665
Q ss_pred EeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecccC-cCC
Q 004729 479 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC-AAL 553 (733)
Q Consensus 479 ~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c-~~L 553 (733)
.+.+++.+.......+..+++|++|++++|. +..++. ....+..+.+..+..+..+.-.. +..+ ..+
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-------f~~~~~~l 156 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-------FVGLSFES 156 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-------STTSBSSC
T ss_pred hcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccc-------hhhcchhh
Confidence 5555566666555567778888888888874 344332 13455566665555554443211 2333 468
Q ss_pred ceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc-cCCC
Q 004729 554 HRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-CSTS 632 (733)
Q Consensus 554 ~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-~~~s 632 (733)
+.|++.+|.|+.+..... ...+|+.|++.+++.++......| +.+++|+.|+|+++ .++.++. .+.+
T Consensus 157 ~~L~L~~N~i~~i~~~~f--------~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~~~~~ 224 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAF--------NGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSYGLEN 224 (350)
T ss_dssp EEEECCSSCCCEECTTSS--------TTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSSSCTT
T ss_pred hhhccccccccCCChhhc--------cccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChhhhcc
Confidence 889999999987643222 345899999998888876544444 67899999999987 6888865 6889
Q ss_pred ccEEecccccccccccc--ccccccEEeccc
Q 004729 633 LVSLSLVGCRAITALEL--KCPILEKVCLDG 661 (733)
Q Consensus 633 L~~L~L~~c~~L~~l~~--~~p~L~~L~L~~ 661 (733)
|++|.+.++.+++.++. .+++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99999999988888873 788999999877
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.04 E-value=1.5e-10 Score=120.34 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=45.8
Q ss_pred cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEEE
Q 004729 310 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSL 387 (733)
Q Consensus 310 ~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~L 387 (733)
.++++++++++++.++. ++..+ .++|+.|++++|.+....+..+..+++|++|++++|.+..+. ..+++|+.|++
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 34555566655555442 11111 245566666666555444444455556666666555543322 23444444444
Q ss_pred cCCchHHH---hhCCCCccEEEEec
Q 004729 388 KRSNMAQA---VLNCPLLHLLDIAS 409 (733)
Q Consensus 388 ~~~~l~~~---~~~~~~L~~L~L~~ 409 (733)
++|.+..+ +..+++|++|++++
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCcCCcCchhhccCCCCCEEECCC
Confidence 44433321 23344455555544
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.03 E-value=9.4e-10 Score=113.16 Aligned_cols=182 Identities=23% Similarity=0.196 Sum_probs=91.6
Q ss_pred ccccccccccCCCCCcC-CCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEe
Q 004729 452 ANLRILNSSYCPNISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRL 526 (733)
Q Consensus 452 ~~L~~L~L~~~~~l~~~-~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L 526 (733)
++|+.|.+.++...... ...+++|++|+++++. +.+. ..+..+++|++|++++|. ++.++. .+++|+.|.+
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCC--GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCc--hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEEC
Confidence 44555554444321111 2245556666666532 3332 245556666666666653 333322 1345555555
Q ss_pred ccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCC
Q 004729 527 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 606 (733)
Q Consensus 527 ~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~ 606 (733)
.++. ++.+.-. .+..+++|+.|++.+|.++.+... ....+++|+.|++++| .++......+
T Consensus 117 ~~n~-l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~~n-~l~~~~~~~~--- 177 (272)
T 3rfs_A 117 VENQ-LQSLPDG-------VFDKLTNLTYLNLAHNQLQSLPKG-------VFDKLTNLTELDLSYN-QLQSLPEGVF--- 177 (272)
T ss_dssp TTSC-CCCCCTT-------TTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSS-CCCCCCTTTT---
T ss_pred CCCc-CCccCHH-------HhccCCCCCEEECCCCccCccCHH-------HhccCccCCEEECCCC-CcCccCHHHh---
Confidence 4432 2211100 145566777777777766654321 1224567777777774 5554332222
Q ss_pred CCCCCccEEEeecCCCCccccc----cCCCccEEeccccccccccccccccccEEeccc
Q 004729 607 GGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITALELKCPILEKVCLDG 661 (733)
Q Consensus 607 ~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~~ 661 (733)
+.+++|+.|++++|. ++.++. .+++|+.|++++++ +...||+|+.|++..
T Consensus 178 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWI 231 (272)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHH
T ss_pred cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHH
Confidence 456777777777663 444432 45667777776643 223456666666555
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.03 E-value=5.7e-10 Score=114.78 Aligned_cols=191 Identities=17% Similarity=0.099 Sum_probs=97.9
Q ss_pred hCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCc--C-CCCCC
Q 004729 397 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL--E-SVRLP 473 (733)
Q Consensus 397 ~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~--~-~~~l~ 473 (733)
..+++|+.|.+.++. +.... .+..+++|+.|+++++. ++.. .. ...+++|++|+++++..... . ...++
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~~---~l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSVQ---GIQYLPNVRYLALGGNK-LHDI--SA-LKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCCT---TGGGCTTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred ccccceeeeeeCCCC-ccccc---ccccCCCCcEEECCCCC-CCCc--hh-hcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 346677777777743 33321 24456777777777765 3321 11 12445555555555431111 1 12344
Q ss_pred CccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccCcCC
Q 004729 474 MLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAAL 553 (733)
Q Consensus 474 ~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L 553 (733)
+|++|+++++ .+.......++.+++|++|++++|. ++.++. . .+..+++|
T Consensus 110 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---------------------~-------~~~~l~~L 159 (272)
T 3rfs_A 110 NLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPK---------------------G-------VFDKLTNL 159 (272)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---------------------T-------TTTTCTTC
T ss_pred CCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCH---------------------H-------HhccCccC
Confidence 5555555542 2333222223344444444444442 222111 0 14566777
Q ss_pred ceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCc
Q 004729 554 HRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSL 633 (733)
Q Consensus 554 ~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL 633 (733)
+.|++.+|.++.+... ....+++|+.|++++| .++......+ ..+++|+.|++.+++-. ..+++|
T Consensus 160 ~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~~----~~~~~l 224 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEG-------VFDKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPWD----CTCPGI 224 (272)
T ss_dssp CEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSCBC----CCTTTT
T ss_pred CEEECCCCCcCccCHH-------HhcCCccCCEEECCCC-cCCccCHHHH---hCCcCCCEEEccCCCcc----ccCcHH
Confidence 7777777777654321 1235678888888874 5665433323 56788888888777422 224456
Q ss_pred cEEeccc
Q 004729 634 VSLSLVG 640 (733)
Q Consensus 634 ~~L~L~~ 640 (733)
+.|++..
T Consensus 225 ~~l~~~~ 231 (272)
T 3rfs_A 225 RYLSEWI 231 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.99 E-value=6.2e-10 Score=115.75 Aligned_cols=57 Identities=23% Similarity=0.137 Sum_probs=34.4
Q ss_pred hcccccccccccCCCCCc-CCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 450 SCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 450 ~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
.+++|+.|+++++..... ....+++|++|+++++ .+++. ..+..+++|+.|++++|.
T Consensus 154 ~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N-~i~~l--~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEEEEEEE
T ss_pred cCCCCCEEEccCCccccchhhcCCCccCEEECCCC-cCCCC--hhhccCCCCCEEECcCCc
Confidence 344455555544431111 1335677888888774 45553 247788899999998874
No 96
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.95 E-value=2.6e-10 Score=85.53 Aligned_cols=47 Identities=30% Similarity=0.576 Sum_probs=40.0
Q ss_pred ccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEe
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLN 268 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~ 268 (733)
..+..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+.++
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 45779999999999999999999999999999999999999999874
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.93 E-value=7.8e-10 Score=114.99 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=88.9
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
.++++.|++.++. +... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.. ++. ...+++|++|
T Consensus 45 l~~L~~L~l~~~~-i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEE
T ss_pred cCcccEEEccCCC-cccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEE
Confidence 3456777776642 2222 235667777777777777664322 6677777777777776654 222 4456666666
Q ss_pred EeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHH
Q 004729 366 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 445 (733)
Q Consensus 366 ~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~ 445 (733)
++++|.+..+. .+..+++|+.|+++++ .+... ..+..+++|+.|+++++. +++...
T Consensus 118 ~L~~n~i~~~~------------------~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~- 173 (291)
T 1h6t_A 118 SLEHNGISDIN------------------GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP- 173 (291)
T ss_dssp ECTTSCCCCCG------------------GGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG-
T ss_pred ECCCCcCCCCh------------------hhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh-
Confidence 66666544321 1334455555555553 23322 123445566666665554 333211
Q ss_pred HHHHhcccccccccccCCCCCc-CCCCCCCccEEEeCCC
Q 004729 446 EIALSCANLRILNSSYCPNISL-ESVRLPMLTVLQLHSC 483 (733)
Q Consensus 446 ~l~~~~~~L~~L~L~~~~~l~~-~~~~l~~L~~L~L~~c 483 (733)
...+++|+.|+++++..-.. ....+++|+.|+++++
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred --hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 23455666666655542111 2335677777777763
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.91 E-value=7e-09 Score=101.05 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=78.4
Q ss_pred CCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCCCCcEEEeccccCCccccccccccceeecccC
Q 004729 471 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 550 (733)
Q Consensus 471 ~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c 550 (733)
.+++|++|+++++ .+.+.. .+..+++|++|++++| .+..++ .+..+
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~------------------------------~l~~l 87 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNI-HATNYN------------------------------PISGL 87 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESC-CCSCCG------------------------------GGTTC
T ss_pred hcCCccEEeccCC-CccChH--HHhcCCCCCEEEccCC-CCCcch------------------------------hhhcC
Confidence 4566777777763 344322 4556667777777666 222221 13455
Q ss_pred cCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc--
Q 004729 551 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF-- 628 (733)
Q Consensus 551 ~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~-- 628 (733)
++|+.|++++|.++...+.. ...+++|+.|++++ +.+++..+..+ ..+++|+.|++++|..++.++.
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~~L~Ls~-n~i~~~~~~~l---~~l~~L~~L~L~~n~~i~~~~~l~ 156 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPN-------LSGLTSLTLLDISH-SAHDDSILTKI---NTLPKVNSIDLSYNGAITDIMPLK 156 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCC-------CTTCTTCCEEECCS-SBCBGGGHHHH---TTCSSCCEEECCSCTBCCCCGGGG
T ss_pred CCCCEEEeECCccCcccChh-------hcCCCCCCEEEecC-CccCcHhHHHH---hhCCCCCEEEccCCCCccccHhhc
Confidence 66666666666655422211 12456677777766 35555444444 4566677777766654554432
Q ss_pred cCCCccEEeccccccccccc--cccccccEEeccc
Q 004729 629 CSTSLVSLSLVGCRAITALE--LKCPILEKVCLDG 661 (733)
Q Consensus 629 ~~~sL~~L~L~~c~~L~~l~--~~~p~L~~L~L~~ 661 (733)
.+++|+.|++++| .++.+. ..+++|++|++++
T Consensus 157 ~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 157 TLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp GCSSCCEEECTTB-CCCCCTTGGGCSSCCEEEECB
T ss_pred CCCCCCEEECCCC-CCcChHHhccCCCCCEEEeeC
Confidence 4555666666553 233332 2456666666665
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.90 E-value=1.4e-09 Score=124.40 Aligned_cols=117 Identities=17% Similarity=0.245 Sum_probs=56.8
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
.++|+.|++.++. +... ..+..+++|+.|+|++|.+....+ +..+++|+.|+|++|.+... + .+..+++|++|
T Consensus 42 L~~L~~L~l~~n~-i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCC-CCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCC-CCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEE
Confidence 3455666665532 2221 135566666666666666654322 55666666666666655431 1 23455566666
Q ss_pred Eeeccccchhc--ccCCCCcEEEEcCCchHH--HhhCCCCccEEEEec
Q 004729 366 EITKCRVMRVS--IRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIAS 409 (733)
Q Consensus 366 ~L~~~~~~~i~--~~~~~L~~L~L~~~~l~~--~~~~~~~L~~L~L~~ 409 (733)
+|++|.+..+. ..+++|+.|+|++|.+.. .+..+++|+.|+|++
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLED 162 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCS
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcC
Confidence 66655543321 234444444444443321 133344444444444
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=1.8e-09 Score=123.56 Aligned_cols=163 Identities=19% Similarity=0.228 Sum_probs=110.3
Q ss_pred hcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc--ccCCCCcEEE
Q 004729 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLS 386 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~--~~~~~L~~L~ 386 (733)
..+++|+.|+++++.+... ..+..+++|+.|+|++|.+....+ ...+++|+.|+|++|.+..++ ..+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 3456778888887776642 246678888888888887765443 557788888888888765433 4577788888
Q ss_pred EcCCchHH--HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCC
Q 004729 387 LKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN 464 (733)
Q Consensus 387 L~~~~l~~--~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~ 464 (733)
|++|.+.. .+..+++|+.|+|++| .+... ..+..+++|+.|+|++|. +..... +..+++|+.|+|++|..
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCC
T ss_pred ecCCCCCCCccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCCCC
Confidence 88776553 2567788888888875 35443 345677888888888776 443322 34677888888887753
Q ss_pred CCc-CCCCCCCccEEEeCCC
Q 004729 465 ISL-ESVRLPMLTVLQLHSC 483 (733)
Q Consensus 465 l~~-~~~~l~~L~~L~L~~c 483 (733)
-.. ....+++|+.|+|.++
T Consensus 188 ~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 188 SDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CBCGGGTTCTTCSEEECCSE
T ss_pred CCChHHccCCCCCEEEccCC
Confidence 222 2346778888888874
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.88 E-value=1.1e-09 Score=111.22 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=75.9
Q ss_pred CccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEe
Q 004729 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 367 (733)
+++.|++++. .+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|++
T Consensus 36 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 4666666652 233333334555666666666666665544444556666666666666655444444555666666666
Q ss_pred eccccchhc----ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 368 TKCRVMRVS----IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 368 ~~~~~~~i~----~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+..++ ..+++|+.|+|++|.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVP-HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccC-HHHHhCCCCCCEEEeeCCc
Confidence 666554333 2345555555555544322 334455555555553 232211 1123344555555555544
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.86 E-value=4.1e-09 Score=102.73 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=80.0
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
+++++.|++++. .+.... .+..+++|++|++++|.+.. +..+..+++|++|++++|.+..........+++|++|
T Consensus 43 l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCC-CccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 345666666653 222211 35566666777766665543 2245566666666666666654444444455556666
Q ss_pred EeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHH
Q 004729 366 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 445 (733)
Q Consensus 366 ~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~ 445 (733)
++++|.+... ....+..+++|++|++++|..+.+.. .+..+++|+.|++++|. +++..
T Consensus 118 ~Ls~n~i~~~----------------~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~-- 175 (197)
T 4ezg_A 118 DISHSAHDDS----------------ILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR-- 175 (197)
T ss_dssp ECCSSBCBGG----------------GHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT--
T ss_pred EecCCccCcH----------------hHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH--
Confidence 6555543320 12234556666666666654244332 34556667777776665 44321
Q ss_pred HHHHhcccccccccccCC
Q 004729 446 EIALSCANLRILNSSYCP 463 (733)
Q Consensus 446 ~l~~~~~~L~~L~L~~~~ 463 (733)
....+++|+.|+++++.
T Consensus 176 -~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -TGGGCSSCCEEEECBC-
T ss_pred -HhccCCCCCEEEeeCcc
Confidence 12356667776666543
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.82 E-value=2.5e-08 Score=101.11 Aligned_cols=146 Identities=24% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCccccc----CCCCCcEEEeccccCCccccccccccceeecc
Q 004729 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL----ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 548 (733)
Q Consensus 473 ~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~ 548 (733)
++|++|++++ +.+.......+..+++|++|++++|. +..++. .+++|+.|.+.++. ++.+... .+.
T Consensus 35 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-------~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASLPLG-------VFD 104 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT-------TTT
T ss_pred CCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-ccccChh-------Hhc
Confidence 4667777766 33544444455666677777776663 232221 13444444444321 1111100 134
Q ss_pred cCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc
Q 004729 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 628 (733)
Q Consensus 549 ~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~ 628 (733)
.+++|+.|++++|.++.+... .+..+++|+.|++++ +.++......| +.+++|+.|+|+++ .++.++.
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~ 172 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSG-------VFDRLTKLKELRLNT-NQLQSIPAGAF---DKLTNLQTLSLSTN-QLQSVPH 172 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCT
T ss_pred ccCCCCEEEcCCCcCCCcChh-------HhccCCcccEEECcC-CcCCccCHHHc---CcCcCCCEEECCCC-cCCccCH
Confidence 556666666666665544321 112345666666666 35543322222 44566666666555 2333321
Q ss_pred ----cCCCccEEeccc
Q 004729 629 ----CSTSLVSLSLVG 640 (733)
Q Consensus 629 ----~~~sL~~L~L~~ 640 (733)
.+++|+.|++++
T Consensus 173 ~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 173 GAFDRLGKLQTITLFG 188 (251)
T ss_dssp TTTTTCTTCCEEECCS
T ss_pred HHHhCCCCCCEEEeeC
Confidence 334444454444
No 104
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=8.6e-09 Score=109.06 Aligned_cols=98 Identities=9% Similarity=0.141 Sum_probs=50.7
Q ss_pred CCCccEEEEcCCCchhHHHHHHhhc-CCCCCEEEecCccCC--hHHHHhccCCCCCcEEEEecCcCCccccccccc----
Q 004729 286 YPNATEVNIYGAPAIHLLVMKAVSL-LRNLEALTLGRGQLG--DAFFHALADCSMLKSLNVNDATLGNGVQEIPIN---- 358 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~~~~~~~l~~-l~~L~~L~Ls~~~i~--~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~---- 358 (733)
..+++.|.+.+. +.......+.. +++|+.|+|++|.+. .... ..++.++.+.+..+.+.. ..+..
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~~---~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVPA---YAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEECT---TTTEEEETT
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccCH---HHhcccccc
Confidence 346788888773 33333445554 788999999988776 1100 112222333333332211 12223
Q ss_pred ----CCCccEEEeeccccchhc----ccCCCCcEEEEcCCch
Q 004729 359 ----HDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNM 392 (733)
Q Consensus 359 ----~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~~~l 392 (733)
+++|++|.|.. .+..+. ..|++|+.+.+.++.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc
Confidence 66666666665 443332 3466666666665543
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=3.8e-08 Score=111.50 Aligned_cols=173 Identities=21% Similarity=0.204 Sum_probs=107.7
Q ss_pred CCcCEEEEecCCCCcccccC-CCCCcEEEeccccCCccccccccccceeecccCcCCceeeeccCccccccccccccHHH
Q 004729 498 YMLEVLELDNCNLLTSVSLE-LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTS 576 (733)
Q Consensus 498 ~~L~~L~L~~~~~l~~~~~~-l~~L~~L~L~~c~~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~ 576 (733)
.+|+.|+++++. ++.+|.. +++|+.|.+.++ .++ .+. ..+++|+.|++++|.|+.+.. +
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N-~l~----------~ip-~~l~~L~~L~Ls~N~l~~ip~-----l-- 118 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNLPPQITVLEITQN-ALI----------SLP-ELPASLEYLDACDNRLSTLPE-----L-- 118 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCCCTTCSEEECCSS-CCS----------CCC-CCCTTCCEEECCSSCCSCCCC-----C--
T ss_pred CCccEEEeCCCC-CCccCHhHcCCCCEEECcCC-CCc----------ccc-cccCCCCEEEccCCCCCCcch-----h--
Confidence 589999999884 5666653 467777777654 222 222 446888888888888876432 1
Q ss_pred HHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccccCCCccEEeccccccccccccccccccE
Q 004729 577 LALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEK 656 (733)
Q Consensus 577 l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~~~~sL~~L~L~~c~~L~~l~~~~p~L~~ 656 (733)
..+|+.|++++ +.++. ++. .+++|+.|+|+++ .++.++..+++|+.|+++++ .|+.++.-.++|++
T Consensus 119 ----~~~L~~L~Ls~-N~l~~-----lp~--~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~L~~lp~l~~~L~~ 184 (571)
T 3cvr_A 119 ----PASLKHLDVDN-NQLTM-----LPE--LPALLEYINADNN-QLTMLPELPTSLEVLSVRNN-QLTFLPELPESLEA 184 (571)
T ss_dssp ----CTTCCEEECCS-SCCSC-----CCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCE
T ss_pred ----hcCCCEEECCC-CcCCC-----CCC--cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCC-CCCCcchhhCCCCE
Confidence 12888899988 46654 222 5788888888887 46666666778888888874 35554432267777
Q ss_pred EecccccccccccccccCC-------cEEEecCCCCccccccCc---ccccEEEecCCCC
Q 004729 657 VCLDGCDHIESASFVPVAL-------QSLNLGICPKLSTLGIEA---LHMVVLELKGCGV 706 (733)
Q Consensus 657 L~L~~c~~L~~~~~~~~~L-------~~L~L~~c~~L~~l~~~~---~~L~~L~l~~c~~ 706 (733)
|+|+++ .|+.+...+.+| +.|+++++ +|+.+|... .+|+.|+|++|+.
T Consensus 185 L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 185 LDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred EECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 777773 444432222255 66666665 365555322 2455556655543
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.73 E-value=9.5e-08 Score=108.20 Aligned_cols=171 Identities=19% Similarity=0.137 Sum_probs=94.0
Q ss_pred ccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccCCC-CCcEEEecccc
Q 004729 452 ANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELP-RLQNIRLVHCR 530 (733)
Q Consensus 452 ~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~l~-~L~~L~L~~c~ 530 (733)
.+|+.|+++++........-+++|++|+++++ .++... ..+++|++|++++|. ++.+|. ++ +|+.|.+.++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~Ls~N- 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQN-ALISLP----ELPASLEYLDACDNR-LSTLPE-LPASLKHLDVDNN- 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCCTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSS-
T ss_pred CCccEEEeCCCCCCccCHhHcCCCCEEECcCC-CCcccc----cccCCCCEEEccCCC-CCCcch-hhcCCCEEECCCC-
Confidence 35666666555422111112356777777763 344322 345677777777763 444554 33 5555555443
Q ss_pred CCccccccccccceeecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCC
Q 004729 531 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 610 (733)
Q Consensus 531 ~l~~l~l~~~~L~~l~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~ 610 (733)
.++. +.- .+++|+.|++++|.|+.+.. .+++|+.|+|++| .++... . + . +
T Consensus 131 ~l~~----------lp~-~l~~L~~L~Ls~N~l~~lp~-----------~l~~L~~L~Ls~N-~L~~lp-~-l---~--~ 180 (571)
T 3cvr_A 131 QLTM----------LPE-LPALLEYINADNNQLTMLPE-----------LPTSLEVLSVRNN-QLTFLP-E-L---P--E 180 (571)
T ss_dssp CCSC----------CCC-CCTTCCEEECCSSCCSCCCC-----------CCTTCCEEECCSS-CCSCCC-C-C---C--T
T ss_pred cCCC----------CCC-cCccccEEeCCCCccCcCCC-----------cCCCcCEEECCCC-CCCCcc-h-h---h--C
Confidence 1221 111 45677777777777765421 3467777777773 565421 1 2 2 6
Q ss_pred CccEEEeecCCCCccccccCCCc-------cEEecccccccccccc---ccccccEEecccc
Q 004729 611 MLKSLVLDNCEGLTVVRFCSTSL-------VSLSLVGCRAITALEL---KCPILEKVCLDGC 662 (733)
Q Consensus 611 ~L~~L~L~~c~~L~~~~~~~~sL-------~~L~L~~c~~L~~l~~---~~p~L~~L~L~~c 662 (733)
+|+.|+|+++ .++.++....+| +.|+++++ .|+.++. .+++|+.|+|+++
T Consensus 181 ~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 181 SLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp TCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred CCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 7777777776 455554433356 77777763 4555542 4677777777774
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.71 E-value=2e-08 Score=92.89 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=79.5
Q ss_pred CCCCCEEEecCccCC-hHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcC
Q 004729 311 LRNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 389 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~-~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~ 389 (733)
.++|++|++++|.+. ...+..+..+++|++|++++|.+... .....+++|++|++++|.+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~--------------- 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG--------------- 78 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS---------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc---------------
Confidence 456777777777766 34444556677777777777766543 334455666666666554321
Q ss_pred CchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH--HHHHHhcccccccccc
Q 004729 390 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL--REIALSCANLRILNSS 460 (733)
Q Consensus 390 ~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l--~~l~~~~~~L~~L~L~ 460 (733)
.+...+..+++|++|+++++ .+........+..+++|+.|+++++. ++.... ...+..+++|+.|+++
T Consensus 79 -~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 -GLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -CTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -hHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 12344556777777777774 46654443456677888888888776 443221 2344567777777765
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.70 E-value=1.2e-08 Score=104.38 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=58.7
Q ss_pred hcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcc-cCCCCcEEEE
Q 004729 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHLSL 387 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~-~~~~L~~L~L 387 (733)
..+++|++|+++++.+... . .+..+++|++|++++|.+....+ ...+++|++|++++|.+..++. ..++|+.|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEc
Confidence 3455666666666655532 1 45556666666666666554332 4456666666666665443221 0134444444
Q ss_pred cCCchHH--HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~--~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+.. .+..+++|+.|+++++ .+++.. .+..+++|+.|+++++.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTSC
T ss_pred cCCccCCChhhcCcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCCc
Confidence 4443321 1334445555555442 233321 23344455555555443
No 109
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=4.3e-08 Score=92.50 Aligned_cols=94 Identities=15% Similarity=0.254 Sum_probs=62.1
Q ss_pred CccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEe
Q 004729 401 LLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQL 480 (733)
Q Consensus 401 ~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L 480 (733)
+|+.|++++|. +++.++..+ ..|++|++|+|++|..++|.++..+... ++ .+++|++|+|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~-----------------~~~~L~~L~L 121 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL-EN-----------------LQKSMLEMEI 121 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC-HH-----------------HHHHCCEEEE
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc-cc-----------------ccCCCCEEEc
Confidence 57777777775 777776554 5677888888888877888777777521 00 0124556666
Q ss_pred CCCCCCchHHHHHhhCCCCcCEEEEecCCCCccc
Q 004729 481 HSCEGITSASMAAISHSYMLEVLELDNCNLLTSV 514 (733)
Q Consensus 481 ~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 514 (733)
++|..++|.++..++.+++|++|+|++|..+++.
T Consensus 122 s~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred CCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 6666677777777777777777777777666553
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.66 E-value=1.8e-08 Score=98.99 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=71.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+++++.++......+..+++|++|++++|.+.......+..+++|++|++++|.+..++ ..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45667777766666443444556677777777776666444444556667777777766654333 34556666666
Q ss_pred cCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCC-ccceeC-HHHhccCCCccEEEecCCC
Confidence 66554422 345666777777663 333211 1223456677777777664
No 111
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=7.4e-08 Score=103.57 Aligned_cols=51 Identities=25% Similarity=0.200 Sum_probs=31.0
Q ss_pred hhCCCCccEEEEecCCCCChHHHH---HHHhcCCCCcEEeccCCCCCChhHHHHHH
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIR---LAATSCPQLESLDMSNCSCVSDESLREIA 448 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~---~l~~~~~~L~~L~L~~~~~l~~~~l~~l~ 448 (733)
+..+++|++|+|++| .+++.+.. ..+..+++|+.|+|++|. +++.+...+.
T Consensus 207 L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~ 260 (372)
T 3un9_A 207 LDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLR 260 (372)
T ss_dssp GGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHH
T ss_pred HhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHH
Confidence 445567777777774 46655433 333455677777777766 6666666554
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=1.9e-08 Score=106.42 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=60.5
Q ss_pred HHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cCCCcc-EEeccccccccccc
Q 004729 574 LTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLV-SLSLVGCRAITALE 648 (733)
Q Consensus 574 L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~-~L~L~~c~~L~~l~ 648 (733)
...+...|++|+.|+|++ +.++......| .+|++|+.|.|.+. ++.++. .+.+|+ .|.+.+ +++.+.
T Consensus 218 ~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 218 FKLIRDYMPNLVSLDISK-TNATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp HHHHHHHCTTCCEEECTT-BCCCEECTTTT---TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred HHHHHHhcCCCeEEECCC-CCcceecHhhh---hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEc
Confidence 344455688999999988 46766554555 57889999999774 666653 678888 888876 565554
Q ss_pred ----cccccccEEeccccccccc
Q 004729 649 ----LKCPILEKVCLDGCDHIES 667 (733)
Q Consensus 649 ----~~~p~L~~L~L~~c~~L~~ 667 (733)
.+|++|++|++.+ +.++.
T Consensus 290 ~~aF~~c~~L~~l~l~~-n~i~~ 311 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATG-DKITT 311 (329)
T ss_dssp TTTTTTCTTEEEEEECS-SCCCE
T ss_pred hhhhhCCccCCEEEeCC-CccCc
Confidence 3789999999866 34444
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.64 E-value=2.2e-08 Score=102.30 Aligned_cols=142 Identities=23% Similarity=0.306 Sum_probs=110.7
Q ss_pred hhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCcc
Q 004729 284 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (733)
Q Consensus 284 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (733)
..+++++.|++.++. +... ..+..+++|++|+|++|.+++..+ +..+++|++|++++|.+.. ++.+.. ++|+
T Consensus 38 ~~l~~L~~L~l~~n~-i~~l--~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~ 109 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQSL--AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLS 109 (263)
T ss_dssp HHHTTCSEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCC
T ss_pred hhcCcCcEEECcCCC-cccc--hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--Cccc
Confidence 356789999999853 4332 257889999999999999986443 8899999999999998875 333332 9999
Q ss_pred EEEeeccccchhc--ccCCCCcEEEEcCCchHH--HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 364 RLEITKCRVMRVS--IRCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 364 ~L~L~~~~~~~i~--~~~~~L~~L~L~~~~l~~--~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
+|++++|.+..+. ..+++|+.|++++|.+.. .+..+++|++|+++++ .+.+. ..+..+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 9999999876553 578999999999987654 4678999999999995 56554 345567788888887765
No 114
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.64 E-value=3.1e-08 Score=93.49 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=66.0
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCc-CCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
+|++|+++++.+++..+..+..|++|++|+|++|. ++ +.+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It---------------------------------------D~g 102 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE---------------------------------------DGC 102 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC---------------------------------------HHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC---------------------------------------HHH
Confidence 46666666666666666655556666666665553 22 223
Q ss_pred hHHHhh---CCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH--HHHHHhccccc
Q 004729 392 MAQAVL---NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL--REIALSCANLR 455 (733)
Q Consensus 392 l~~~~~---~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l--~~l~~~~~~L~ 455 (733)
+..+.. .+++|++|+|++|..+++.++..+ ..|++|++|++++|..+++.++ ..+-..+|+++
T Consensus 103 L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 103 LERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 333332 145788888888888888888765 4688888888888888888653 34444556554
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.62 E-value=1.7e-08 Score=95.46 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=65.0
Q ss_pred CCCCEEEecCccCC-hHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccch-hc---ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-VS---IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~-~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~-i~---~~~~~L~~L~ 386 (733)
++|++|++++|.+. ..++..+..+++|++|++++|.+... .....+++|++|++++|.+.. ++ ..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 22333334455555555555554433 333445555555555555433 11 2355555555
Q ss_pred EcCCchH-----HHhhCCCCccEEEEecCCCCChHHH--HHHHhcCCCCcEEeccCCC
Q 004729 387 LKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAI--RLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 387 L~~~~l~-----~~~~~~~~L~~L~L~~c~~l~~~~l--~~l~~~~~~L~~L~L~~~~ 437 (733)
+++|.+. ..+..+++|++|+++++ .+..... ...+..+++|+.|+++++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5555433 23456777777777775 3333221 2356678888888887765
No 116
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=7.8e-08 Score=103.38 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=91.3
Q ss_pred CCccEEEEcCCCchhHHHHHHhh-----cCCCCCEEEecCccCChHHHHhcc-CCCCCcEEEEecCcCCcccccccccCC
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVS-----LLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHD 360 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~-----~l~~L~~L~Ls~~~i~~~~~~~L~-~~~~L~~L~L~~~~l~~~~~~~~~~~~ 360 (733)
+.++.|+++++. +.......+. ..++|++|+|++|.+++.....+. .+++|++|+|++|.+++........
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~-- 148 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD-- 148 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH--
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH--
Confidence 456666666643 3332222222 225666666666666655444443 2345566666665544321111100
Q ss_pred CccEEEeeccccchhcccCCCCcEEEEcCCchH--------HHhhCCCCccEEEEecCCCCChHHHH---HHHhcCCCCc
Q 004729 361 QLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA--------QAVLNCPLLHLLDIASCHKLSDAAIR---LAATSCPQLE 429 (733)
Q Consensus 361 ~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l~--------~~~~~~~~L~~L~L~~c~~l~~~~l~---~l~~~~~~L~ 429 (733)
.+....++|+.|+|++|.+. ..+..+++|++|+|++| .+.+.+.. ..+..+++|+
T Consensus 149 -------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 149 -------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp -------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCC
T ss_pred -------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcC
Confidence 00012334444444444332 22356677777777774 46665533 3345566788
Q ss_pred EEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCC
Q 004729 430 SLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHS 497 (733)
Q Consensus 430 ~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~ 497 (733)
.|++++|. +++.+...+...+. ..++|++|+|++ +.+++.+...+...
T Consensus 215 ~L~Ls~N~-i~~~g~~~l~~~L~------------------~~~~L~~L~Ls~-N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 215 ELNVAYNG-AGDTAALALARAAR------------------EHPSLELLHLYF-NELSSEGRQVLRDL 262 (372)
T ss_dssp EEECCSSC-CCHHHHHHHHHHHH------------------HCSSCCEEECTT-SSCCHHHHHHHHHC
T ss_pred eEECCCCC-CCHHHHHHHHHHHH------------------hCCCCCEEeccC-CCCCHHHHHHHHHH
Confidence 88887776 77766655543221 234577777777 45787777777653
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.61 E-value=9.7e-08 Score=93.62 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=23.2
Q ss_pred CCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCC
Q 004729 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (733)
Q Consensus 472 l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~ 509 (733)
.++|++|+++++ .++......+..+++|++|++++|.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK 63 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc
Confidence 456777777773 4554444445667777777777663
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.60 E-value=1.8e-08 Score=93.13 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=90.4
Q ss_pred CCCccEEEEcCCCchh-HHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccE
Q 004729 286 YPNATEVNIYGAPAIH-LLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (733)
Q Consensus 286 ~~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (733)
.++++.|+++++. +. ...+..+..+++|++|++++|.+... ..+..+++|++|++++|.+...++.....+++|++
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999864 33 23334567889999999999998865 77888999999999999988767777767888888
Q ss_pred EEeeccccchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEEecCCCCChHHH--HHHHhcCCCCcEEecc
Q 004729 365 LEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAI--RLAATSCPQLESLDMS 434 (733)
Q Consensus 365 L~L~~~~~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l--~~l~~~~~~L~~L~L~ 434 (733)
|++++|.+..++ ....+..+++|++|+++++ .+..... ...+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~---------------~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLS---------------TIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHH---------------HHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChH---------------HHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 888888654321 1123445566666666664 2332211 1345667777777765
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.59 E-value=4.3e-08 Score=97.91 Aligned_cols=124 Identities=16% Similarity=0.095 Sum_probs=77.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|+.|++++|.+..++ ..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 56777777777777555566667777777777777765544455566777777777777665443 34566666666
Q ss_pred cCCchHHH---hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQA---VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~~---~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|++.++.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQN-QLKSIP-HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECTTSC
T ss_pred cCCcccccCcccccCCCCCEEECCCC-cCCccC-HHHHhCCCCCCEEEeeCCC
Confidence 66655422 345666777777663 343221 1234456677777776655
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.59 E-value=3e-08 Score=93.73 Aligned_cols=128 Identities=18% Similarity=0.242 Sum_probs=86.7
Q ss_pred CCCCCcEEEEecCcCC-cccccccccCCCccEEEeeccccchh--cccCCCCcEEEEcCCchH----HHhhCCCCccEEE
Q 004729 334 DCSMLKSLNVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRV--SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLD 406 (733)
Q Consensus 334 ~~~~L~~L~L~~~~l~-~~~~~~~~~~~~L~~L~L~~~~~~~i--~~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~ 406 (733)
..++|++|++++|.+. ..++.....+++|+.|++++|.+..+ ...+++|+.|++++|.+. ..+..+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4589999999999987 45666677899999999999987644 345677888888877554 3345577788888
Q ss_pred EecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHH--HHHHHhcccccccccccCC
Q 004729 407 IASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL--REIALSCANLRILNSSYCP 463 (733)
Q Consensus 407 L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l--~~l~~~~~~L~~L~L~~~~ 463 (733)
++++ .+........+..+++|+.|+++++. ++.... ...+..+++|+.|++.+|.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8775 45543222345567777777777765 332211 1234466777777776655
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.57 E-value=4.1e-08 Score=105.28 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCCEEEecCccCChHHHHhcc-CCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLS 386 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~ 386 (733)
+.++.|+|++|.++......+. .+++|++|+|++|.+....+..+..+++|++|+|++|.+..+. ..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3466677777666654444444 6677777777776666544445556667777777776655432 3456666666
Q ss_pred EcCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHH---hcCCCCcEEeccCCC
Q 004729 387 LKRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAA---TSCPQLESLDMSNCS 437 (733)
Q Consensus 387 L~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~---~~~~~L~~L~L~~~~ 437 (733)
|++|.+.. .+..+++|++|+|+++ .+..... ..+ ..+++|+.|+|+++.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCG-GGTC----CTTCCEEECCSSC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCH-HHhcCcccCCcCCEEECCCCC
Confidence 66665542 2455666777777663 3433211 111 345677777777665
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.57 E-value=3.6e-08 Score=97.80 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=79.6
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|++++|.+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+..++ ..+++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45667777776666444445566677777777777666554555566677777777777665443 34567777777
Q ss_pred cCCchHH----HhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+.. .+..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIA-KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEEC-HHHHhCCCCCCEEEeCCCC
Confidence 7766543 3556778888888874 344322 1234567888999998876
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.56 E-value=4.5e-08 Score=97.13 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=54.9
Q ss_pred CccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEe
Q 004729 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (733)
Q Consensus 288 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L 367 (733)
+++.|++.+ ..+.......+..+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|++
T Consensus 33 ~l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCS-SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCC-CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 445555544 2222222223344455555555555554433444444555555555555544333333344555555555
Q ss_pred eccccchhc----ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEec
Q 004729 368 TKCRVMRVS----IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIAS 409 (733)
Q Consensus 368 ~~~~~~~i~----~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~ 409 (733)
++|.+..+. ..+++|+.|+|++|.+..+ +..+++|++|++++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 555443321 2344555555555444321 33344555555544
No 124
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.56 E-value=9.1e-08 Score=103.87 Aligned_cols=73 Identities=29% Similarity=0.319 Sum_probs=39.0
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cCCCccEEeccccccccccc----ccc
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITALE----LKC 651 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L~~l~----~~~ 651 (733)
.|.+|+.+.+.+ .++......| .+|.+|+.+.|.. .++.++. .|.+|+.+.+.. +++.+. .+|
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C 365 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAF---ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGC 365 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTC
T ss_pred cccccccccccc--ccceechhhh---cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCC
Confidence 456666666653 2333222233 4566666666643 2444432 456666666643 244433 367
Q ss_pred ccccEEeccc
Q 004729 652 PILEKVCLDG 661 (733)
Q Consensus 652 p~L~~L~L~~ 661 (733)
++|+++++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 7777777754
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.55 E-value=5e-08 Score=97.43 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=102.3
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ ..+.......+..+++|++|+|++|.++......+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 40 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 6799999998 445555456678899999999999999755555678899999999999998876666677899999999
Q ss_pred eeccccchhc---ccCCCCcEEEEcCCchHHH----hhCCCCccEEEEecC
Q 004729 367 ITKCRVMRVS---IRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASC 410 (733)
Q Consensus 367 L~~~~~~~i~---~~~~~L~~L~L~~~~l~~~----~~~~~~L~~L~L~~c 410 (733)
+++|.+..++ ..+++|+.|+|++|.+..+ +..+++|+.|++.+.
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 9999987665 4689999999999877643 567899999999984
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=1.1e-10 Score=132.72 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=25.4
Q ss_pred hcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecC
Q 004729 309 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDA 346 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~ 346 (733)
..+++|+.|+|+.|.++ .++..++.|++|+.|+++++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK 382 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccc
Confidence 34667777777777765 56777777777777776544
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.48 E-value=5.6e-08 Score=104.21 Aligned_cols=148 Identities=20% Similarity=0.204 Sum_probs=114.4
Q ss_pred CCccEEEEcCCCchhHHHHHHhh-cCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVS-LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
..++.|++++ +.+.......+. .+++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|+.|
T Consensus 39 ~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCC-CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3578899988 445544444455 88999999999999987666678899999999999999887666677889999999
Q ss_pred Eeeccccchh----cccCCCCcEEEEcCCchHHH----h---hCCCCccEEEEecCCCCChHHHHHHHhcCCC--CcEEe
Q 004729 366 EITKCRVMRV----SIRCPQLEHLSLKRSNMAQA----V---LNCPLLHLLDIASCHKLSDAAIRLAATSCPQ--LESLD 432 (733)
Q Consensus 366 ~L~~~~~~~i----~~~~~~L~~L~L~~~~l~~~----~---~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~--L~~L~ 432 (733)
+|++|.+..+ ...+++|+.|+|++|.+..+ + ..+++|+.|+|+++ .+...... .+..++. |+.|+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-DLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-HHHHSCHHHHTTEE
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-HhhhccHhhcceEE
Confidence 9999998755 35689999999999877643 2 46899999999994 56654322 3345565 47899
Q ss_pred ccCCC
Q 004729 433 MSNCS 437 (733)
Q Consensus 433 L~~~~ 437 (733)
+.+++
T Consensus 196 l~~N~ 200 (361)
T 2xot_A 196 LHNNP 200 (361)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 99877
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.44 E-value=1.4e-07 Score=93.59 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=66.8
Q ss_pred CCCEEEecCccCChHHH-HhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 313 NLEALTLGRGQLGDAFF-HALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~-~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
.+++|+|++|.++...+ ..+..+++|++|+|++|.+....+..+..+++|++|++++|.+..+. ..+++|+.|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34555555555543211 22345555555555555555443334445555555555555544332 24555666666
Q ss_pred cCCchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 388 KRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 388 ~~~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
++|.+..+ +..+++|++|+++++ .+.... +..+..+++|+.|+++++.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVA-PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCC-cCCEEC-HHHhcCCCCCCEEEecCcC
Confidence 65554432 455677777777773 344321 2334567788888888776
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.42 E-value=1.8e-07 Score=89.16 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCCCEEEecCccCChHHHHhccCC-CCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEE
Q 004729 311 LRNLEALTLGRGQLGDAFFHALADC-SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHL 385 (733)
Q Consensus 311 l~~L~~L~Ls~~~i~~~~~~~L~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L 385 (733)
+++|++|++++|.++. + ..+..+ ++|++|++++|.+... .....+++|+.|++++|.+..++ ..+++|+.|
T Consensus 18 ~~~L~~L~l~~n~l~~-i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-I-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-C-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-h-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3445555555554442 1 112222 2555555555544432 22334455555555555544332 234555555
Q ss_pred EEcCCchH---H--HhhCCCCccEEEEecCCCCChHH--HHHHHhcCCCCcEEeccCCC
Q 004729 386 SLKRSNMA---Q--AVLNCPLLHLLDIASCHKLSDAA--IRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 386 ~L~~~~l~---~--~~~~~~~L~~L~L~~c~~l~~~~--l~~l~~~~~~L~~L~L~~~~ 437 (733)
++++|.+. . .+..+++|+.|+++++. +.... -..++..+++|+.|+++.+.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555432 1 34567777777777743 32211 11246678888888888765
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.40 E-value=1.4e-08 Score=98.96 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=61.7
Q ss_pred HhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEE
Q 004729 307 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 386 (733)
Q Consensus 307 ~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~ 386 (733)
.+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++.....+++|++|++++|.+..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~---------- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS---------- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH----------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC----------
Confidence 55666777777777766654 22 4555667777777766655 23333344456666666665433221
Q ss_pred EcCCchHHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 387 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 387 L~~~~l~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
.+..+++|++|+++++ .+........+..+++|+.|+++++.
T Consensus 110 --------~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 --------GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp --------HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred --------ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 2445566666666663 34443322344566777777776665
No 131
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=5.8e-07 Score=95.89 Aligned_cols=63 Identities=24% Similarity=0.173 Sum_probs=44.1
Q ss_pred HHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCCCCCCchHHHHHhh--CCCCcCEEEEec
Q 004729 444 LREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAIS--HSYMLEVLELDN 507 (733)
Q Consensus 444 l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~--~~~~L~~L~L~~ 507 (733)
+..+...+|+|++|.+.++..+......+++|++|.+..| .+++..+..++ .+++|++|+|+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEec
Confidence 4445556677777777665433333345789999999875 47777777776 689999999864
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.33 E-value=3.2e-07 Score=87.41 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=44.8
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc-----ccCCCCcEEEE
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-----IRCPQLEHLSL 387 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~-----~~~~~L~~L~L 387 (733)
+|++|++++|.++.. ..+..+++|++|++++|.+....+.+...+++|++|++++|.+..++ ..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 555555555555432 33444555555555555544332233344555555555555443222 23455555555
Q ss_pred cCCchHH-------HhhCCCCccEEEEec
Q 004729 388 KRSNMAQ-------AVLNCPLLHLLDIAS 409 (733)
Q Consensus 388 ~~~~l~~-------~~~~~~~L~~L~L~~ 409 (733)
++|.+.. .+..+|+|+.|+++.
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 5544331 234455555555554
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.30 E-value=2e-07 Score=92.36 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=99.3
Q ss_pred CCccEEEEcCCCchhHHH-HHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEE
Q 004729 287 PNATEVNIYGAPAIHLLV-MKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 365 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~-~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L 365 (733)
..++.|++++. .+.... ...+..+++|++|+|++|.++......+..+++|++|+|++|.+....+..+..+++|++|
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 35688888873 343331 2336789999999999999986666678899999999999999987777777889999999
Q ss_pred Eeeccccchhc----ccCCCCcEEEEcCCchHH----HhhCCCCccEEEEecC
Q 004729 366 EITKCRVMRVS----IRCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASC 410 (733)
Q Consensus 366 ~L~~~~~~~i~----~~~~~L~~L~L~~~~l~~----~~~~~~~L~~L~L~~c 410 (733)
++++|.+..+. ..+++|+.|+|++|.+.. .+..+++|++|++++.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 99999887553 467899999999987754 3667899999999984
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=3.9e-06 Score=89.49 Aligned_cols=88 Identities=16% Similarity=0.263 Sum_probs=48.3
Q ss_pred CCCCccEEEEecCCCCChHHHHHHHh--cCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCc
Q 004729 398 NCPLLHLLDIASCHKLSDAAIRLAAT--SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPML 475 (733)
Q Consensus 398 ~~~~L~~L~L~~c~~l~~~~l~~l~~--~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L 475 (733)
.+|+|++|.+.+|. +.+.....++. .+++|+.|+|+.+. +++.+...+...++ .+++|
T Consensus 250 ~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~------------------~l~~L 309 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVD------------------KIKHL 309 (362)
T ss_dssp TCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHH------------------HHTTC
T ss_pred CCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcc------------------cCCcc
Confidence 46777777777653 44433333332 35677777776654 66666555431111 23456
Q ss_pred cEEEeCCCCCCchHHHHHhhC-CCCcCEEEEecC
Q 004729 476 TVLQLHSCEGITSASMAAISH-SYMLEVLELDNC 508 (733)
Q Consensus 476 ~~L~L~~c~~l~~~~~~~l~~-~~~L~~L~L~~~ 508 (733)
+.|+++.| .+++.....+.. + ...++++..
T Consensus 310 ~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 310 KFINMKYN-YLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp SEEECCSB-BCCHHHHHHHHHHC--CSEEECCSB
T ss_pred eEEECCCC-cCCHHHHHHHHHHc--CCEEEecCC
Confidence 66666664 477777666664 3 344566554
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=7.1e-06 Score=88.81 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=15.0
Q ss_pred cCCCccEEeccccccccccc----cccccccEEecc
Q 004729 629 CSTSLVSLSLVGCRAITALE----LKCPILEKVCLD 660 (733)
Q Consensus 629 ~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~ 660 (733)
.+.+|+.+.+.. +++.+. .+|.+|++++|.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeC
Confidence 455566655542 233332 245666666654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.20 E-value=1.2e-07 Score=92.34 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=74.2
Q ss_pred HHHHhhCCCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccC
Q 004729 280 EDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH 359 (733)
Q Consensus 280 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~ 359 (733)
...+..+++++.|+++++ .+... . .+..+++|+.|++++|.+. .++..+..+++|++|++++|.+.. ++ ....+
T Consensus 41 ~~~~~~l~~L~~L~ls~n-~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTN-NIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp HHHHHHTTTCSEEECSEE-EESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred hHHHhcCCCCCEEECCCC-CCccc-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 335667899999999874 34332 2 6678899999999999887 344445567899999999998875 33 34567
Q ss_pred CCccEEEeeccccchhc-----ccCCCCcEEEEcCCch
Q 004729 360 DQLRRLEITKCRVMRVS-----IRCPQLEHLSLKRSNM 392 (733)
Q Consensus 360 ~~L~~L~L~~~~~~~i~-----~~~~~L~~L~L~~~~l 392 (733)
++|++|++++|.+..+. ..+++|+.|++++|.+
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 88888888888654322 2344444444444443
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.11 E-value=2.8e-06 Score=82.25 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=60.1
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+|++|.++ .++..+..+++|++|+|++|.+....+..+..+++|++|++++|.+..+. ..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 45666666666665 33345566666666666666666554455556666666666666655443 34566777777
Q ss_pred cCCchHH----HhhCCCCccEEEEec
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIAS 409 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~ 409 (733)
++|.+.. .+..+++|+.|++++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCC
Confidence 6665543 245677788888876
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.10 E-value=9.9e-07 Score=103.32 Aligned_cols=144 Identities=11% Similarity=0.098 Sum_probs=68.7
Q ss_pred hccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc---ccCCCCcEEEEcCCchHH---HhhCCCCccE
Q 004729 331 ALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCPQLEHLSLKRSNMAQ---AVLNCPLLHL 404 (733)
Q Consensus 331 ~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~---~~~~~L~~L~L~~~~l~~---~~~~~~~L~~ 404 (733)
.+..+++|+.|+|++|.+.. ++.....+++|++|+|++|.+..++ ..+++|+.|+|++|.+.. .+..+++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 34445555555555555442 2222224555555555555544333 234555555555554442 2456778888
Q ss_pred EEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChhHHHHHHHhcccccccccccCCCCCcCCCCCCCccEEEeCC
Q 004729 405 LDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHS 482 (733)
Q Consensus 405 L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~l~~L~~L~L~~ 482 (733)
|+|+++ .+.. ++..+..+++|+.|+|+++. ++......+......+..|.+.++... ..-...|+.|++..
T Consensus 298 L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~---~~~p~~l~~l~l~~ 368 (727)
T 4b8c_D 298 FYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE---IPLPHERRFIEINT 368 (727)
T ss_dssp EECCSS-CCCC--CCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCC--------
T ss_pred EECCCC-CCCc--cChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc---CcCccccceeEeec
Confidence 888875 4543 23336678899999999887 654433333211122233455554321 11233566666655
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.09 E-value=2.6e-06 Score=80.99 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
++|++|+++++.+.......+..+++|++|++++|.+.......+..+++|++|++++|.+..++ ..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56777777777666444444566777777777777666544445556777777777777665443 34567777777
Q ss_pred cCCchHHH----hhCCCCccEEEEecCC
Q 004729 388 KRSNMAQA----VLNCPLLHLLDIASCH 411 (733)
Q Consensus 388 ~~~~l~~~----~~~~~~L~~L~L~~c~ 411 (733)
++|.+..+ +..+++|++|+++++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 77765532 4567888888888853
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.07 E-value=4.3e-06 Score=79.45 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=88.3
Q ss_pred CCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcC
Q 004729 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKR 389 (733)
Q Consensus 314 L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~ 389 (733)
.+.++++++.+.. ++. .-.++|++|+++++.+..........+++|++|++++|.+..++ ..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 5678887777663 222 22478999999999887665566678899999999999877554 4678999999999
Q ss_pred CchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 390 SNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 390 ~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
|.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|+++++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCC
Confidence 877643 467889999999985 455322 2334668899999999887
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.05 E-value=4.8e-06 Score=80.52 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=77.3
Q ss_pred CEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEcCC
Q 004729 315 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS 390 (733)
Q Consensus 315 ~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~~~ 390 (733)
+.++++++.++. ++..+ .++|++|++++|.+. .++..+..+++|+.|++++|.+..+. ..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 467777766652 22222 357888888888776 34455667788888888888776544 45678888888887
Q ss_pred chHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 391 NMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 391 ~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
.+..+ +..+++|++|+++++ .+.... ...+..+++|+.|++.++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCC
Confidence 66533 556788888888874 454322 1234567788888888766
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.05 E-value=6.1e-05 Score=81.56 Aligned_cols=239 Identities=12% Similarity=0.199 Sum_probs=124.6
Q ss_pred cccccccccccCC-CCCcCCCCCCCccEEEeCCCCCCchHHHHHhhCCCCcCEEEEecCCCCcccccC----CCCCcEEE
Q 004729 451 CANLRILNSSYCP-NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIR 525 (733)
Q Consensus 451 ~~~L~~L~L~~~~-~l~~~~~~l~~L~~L~L~~c~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~----l~~L~~L~ 525 (733)
+..++.+.+.+.- .+......-.+|+.+.+.. .+......++.+ .+|+++.|.. .+..++.. +++|+.+.
T Consensus 112 ~~~l~~i~ip~~i~~I~~~aF~~~~L~~i~l~~--~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNSVKSIPKDAFRNSQIAKVVLNE--GLKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTCCCSEEECCT--TCCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCccCEehHhhcccCCccEEEeCC--CccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeee
Confidence 3556666654321 2222222223677887765 244444444444 3577777764 33433321 34555554
Q ss_pred eccccCCcccccccccccee--ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhh
Q 004729 526 LVHCRKFADLNLRAMMLSSI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVF 603 (733)
Q Consensus 526 L~~c~~l~~l~l~~~~L~~l--~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~ 603 (733)
+.. +.+..+ ..-.|.+|+.+.+..+ ++.+.. ..+..|++|+.+++.+ .++......|
T Consensus 187 l~~-----------n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~-------~aF~~~~~L~~l~l~~--~l~~I~~~aF 245 (401)
T 4fdw_A 187 LSK-----------TKITKLPASTFVYAGIEEVLLPVT-LKEIGS-------QAFLKTSQLKTIEIPE--NVSTIGQEAF 245 (401)
T ss_dssp CTT-----------SCCSEECTTTTTTCCCSEEECCTT-CCEECT-------TTTTTCTTCCCEECCT--TCCEECTTTT
T ss_pred cCC-----------CcceEechhhEeecccCEEEeCCc-hheehh-------hHhhCCCCCCEEecCC--CccCcccccc
Confidence 432 222222 0112567777777633 444421 1223677888888875 3554444445
Q ss_pred cCCCCCCCccEEEeecCCCCccccc----cCCCccEEecccccc----ccccc----cccccccEEeccc-ccccccccc
Q 004729 604 SDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRA----ITALE----LKCPILEKVCLDG-CDHIESASF 670 (733)
Q Consensus 604 ~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~----L~~l~----~~~p~L~~L~L~~-c~~L~~~~~ 670 (733)
. . .+|+.+.|.. .++.++. .|.+|+.+.+.+... ++.+. .+|++|+.+.|.+ ...+....|
T Consensus 246 ~---~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF 319 (401)
T 4fdw_A 246 R---E-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLL 319 (401)
T ss_dssp T---T-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTT
T ss_pred c---c-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhh
Confidence 2 2 5788888844 3555432 677888888765211 11222 3688888888875 333333334
Q ss_pred cc-cCCcEEEecCCCCccccccCcc---cccEEEecCCCCC---CccCCCCC-CccEEecc
Q 004729 671 VP-VALQSLNLGICPKLSTLGIEAL---HMVVLELKGCGVL---SDAYINCP-LLTSLDAS 723 (733)
Q Consensus 671 ~~-~~L~~L~L~~c~~L~~l~~~~~---~L~~L~l~~c~~L---~~~~~~~p-~L~~L~l~ 723 (733)
.. .+|+.+.|.. +++.+...++ +|++|.+.++..- .....+|+ .++.|.|.
T Consensus 320 ~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 320 GGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred cCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 32 5677777743 3666554333 5778888775321 12222564 56777664
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.05 E-value=2.5e-06 Score=82.44 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=58.3
Q ss_pred CCCEEEecCccCChHHHH-hccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEE
Q 004729 313 NLEALTLGRGQLGDAFFH-ALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSL 387 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~-~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L 387 (733)
+|++|++++|.+...... .+..+++|++|+|++|.+....+..+..+++|++|++++|.+..+. ..+++|+.|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566666666665533222 2455666666666666665554555556666666666666655433 24566666666
Q ss_pred cCCchHH----HhhCCCCccEEEEecC
Q 004729 388 KRSNMAQ----AVLNCPLLHLLDIASC 410 (733)
Q Consensus 388 ~~~~l~~----~~~~~~~L~~L~L~~c 410 (733)
++|.+.. .+..+++|++|++++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 6665542 3456778888888774
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.96 E-value=0.00012 Score=79.26 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=6.3
Q ss_pred CCcEEeccC
Q 004729 427 QLESLDMSN 435 (733)
Q Consensus 427 ~L~~L~L~~ 435 (733)
+|+.+.+..
T Consensus 136 ~L~~i~l~~ 144 (401)
T 4fdw_A 136 QIAKVVLNE 144 (401)
T ss_dssp CCSEEECCT
T ss_pred CccEEEeCC
Confidence 677777764
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=6.2e-06 Score=93.59 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=71.9
Q ss_pred CCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCch
Q 004729 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (733)
Q Consensus 313 ~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~l 392 (733)
.|+.|+|++|.++. ++. +..+++|++|+|++|.+. .++..+..+++|+.|+|++|.+..++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp---------------- 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD---------------- 502 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG----------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc----------------
Confidence 57888888887774 333 677888888888888777 45555667778888888777654332
Q ss_pred HHHhhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCCCCChh--HHHHHHHhcccccccc
Q 004729 393 AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE--SLREIALSCANLRILN 458 (733)
Q Consensus 393 ~~~~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~--~l~~l~~~~~~L~~L~ 458 (733)
.+..+++|+.|+++++ .++....+..+..+++|+.|+++++. ++.. ....+...+++|+.|+
T Consensus 503 --~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 --GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp --GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred --ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 2334555555555553 33332112334456666666666654 2221 1223333456666654
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.94 E-value=6.6e-06 Score=79.41 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=82.9
Q ss_pred CEEEecCccCChHHHHhccCCCCCcEEEEecCcCCccccc-ccccCCCccEEEeeccccchh----cccCCCCcEEEEcC
Q 004729 315 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE-IPINHDQLRRLEITKCRVMRV----SIRCPQLEHLSLKR 389 (733)
Q Consensus 315 ~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~L~~L~L~~~~~~~i----~~~~~~L~~L~L~~ 389 (733)
+.++++++.++ .++..+ .++|++|++++|.+...... .+..+++|++|++++|.+..+ ...+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888877765 233322 24888888888887655443 466788889999988887655 24578888888888
Q ss_pred CchHHH----hhCCCCccEEEEecCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 004729 390 SNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (733)
Q Consensus 390 ~~l~~~----~~~~~~L~~L~L~~c~~l~~~~l~~l~~~~~~L~~L~L~~~~ 437 (733)
|.+..+ +..+++|++|+++++ .+.... +..+..+++|+.|+++++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeC-HHHhhcCCCCCEEEeCCCC
Confidence 877643 556788889988884 455421 2334567888889888876
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.88 E-value=0.0001 Score=70.46 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=60.6
Q ss_pred hHHHHHHhhcCCCCCEEEecCc-cCChHHHH----hccCCCCCcEEEEecCcCCcc----cccccccCCCccEEEeeccc
Q 004729 301 HLLVMKAVSLLRNLEALTLGRG-QLGDAFFH----ALADCSMLKSLNVNDATLGNG----VQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 301 ~~~~~~~l~~l~~L~~L~Ls~~-~i~~~~~~----~L~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~L~~L~L~~~~ 371 (733)
.......+...+.|++|+|++| .+++.... .+...++|++|+|++|.+++. +.......+.|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3334445556666777777766 66654333 333456666666666655432 11111222333333333332
Q ss_pred cchhcccCCCCcEEEEcCCchHHHhhCCCCccEEEE--ecCCCCChHHH---HHHHhcCCCCcEEeccCCCCCChh
Q 004729 372 VMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDI--ASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDE 442 (733)
Q Consensus 372 ~~~i~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L--~~c~~l~~~~l---~~l~~~~~~L~~L~L~~~~~l~~~ 442 (733)
+.... -..+...+...++|++|+| .+ +.+.+.+. ...+...++|++|+++++. +.+.
T Consensus 105 i~~~g------------~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~ 166 (185)
T 1io0_A 105 ISGSG------------ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPR 166 (185)
T ss_dssp CCHHH------------HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHH
T ss_pred CCHHH------------HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChH
Confidence 11000 0011222444556666666 44 35665542 3334445666666666655 4433
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.87 E-value=3.8e-05 Score=73.57 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=58.2
Q ss_pred HHhhCCCCccEEEEecCCCCChHHHHH---HHhcCCCCcEEeccCCCCCChhHHHHHHH---hcccccccccccCCCCC-
Q 004729 394 QAVLNCPLLHLLDIASCHKLSDAAIRL---AATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYCPNIS- 466 (733)
Q Consensus 394 ~~~~~~~~L~~L~L~~c~~l~~~~l~~---l~~~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~L~~~~~l~- 466 (733)
..+...++|++|+|++|..+.+.+... .+...++|++|+|+++. +++.+...++. ..++|++|+|++|..-.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344555666666666543455544332 23334556666666655 55555444432 22344444444433110
Q ss_pred ------cCCCCCCCccEEEe--CCCCCCchHHHHHhh----CCCCcCEEEEecCC
Q 004729 467 ------LESVRLPMLTVLQL--HSCEGITSASMAAIS----HSYMLEVLELDNCN 509 (733)
Q Consensus 467 ------~~~~~l~~L~~L~L--~~c~~l~~~~~~~l~----~~~~L~~L~L~~~~ 509 (733)
......++|++|++ .+ +.+++.+...++ ..++|++|+|++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 11113456777777 44 557766654443 34677777776663
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=4.6e-05 Score=82.37 Aligned_cols=99 Identities=21% Similarity=0.381 Sum_probs=46.8
Q ss_pred cccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccc
Q 004729 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 626 (733)
Q Consensus 547 l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~ 626 (733)
+.+|++|+.+.+. +.++.+.- ..+.+|.+|+.+.|.. .++...-..| .+|.+|+.+.|.. +++.+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~-------~aF~~c~~L~~i~lp~--~v~~I~~~aF---~~C~~L~~i~ip~--sv~~I 348 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPE-------SVFAGCISLKSIDIPE--GITQILDDAF---AGCEQLERIAIPS--SVTKI 348 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECT-------TTTTTCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEEECT--TCCBC
T ss_pred cccccccccccCC-CcccccCc-------eeecCCCCcCEEEeCC--cccEehHhHh---hCCCCCCEEEECc--ccCEE
Confidence 4566666666654 23333311 1123566777777754 3443333334 4677777777743 24444
Q ss_pred cc----cCCCccEEeccccccccccccccccccEEecc
Q 004729 627 RF----CSTSLVSLSLVGCRAITALELKCPILEKVCLD 660 (733)
Q Consensus 627 ~~----~~~sL~~L~L~~c~~L~~l~~~~p~L~~L~L~ 660 (733)
+. .|.+|+.+.+.+..........|.+|+.+.+.
T Consensus 349 ~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp CGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred hHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 32 56777777766532111112245555555543
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.86 E-value=1.9e-06 Score=101.01 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=84.1
Q ss_pred HHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhc---ccCC
Q 004729 304 VMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS---IRCP 380 (733)
Q Consensus 304 ~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~---~~~~ 380 (733)
....+..+++|+.|+|++|.+. .++..+..+++|++|+|++|.+. .++..+..+++|+.|+|++|.+..++ ..++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 3455678899999999999887 45555668899999999999888 56666678999999999999887665 4578
Q ss_pred CCcEEEEcCCchHHH---hhCCCCccEEEEecCCCCCh
Q 004729 381 QLEHLSLKRSNMAQA---VLNCPLLHLLDIASCHKLSD 415 (733)
Q Consensus 381 ~L~~L~L~~~~l~~~---~~~~~~L~~L~L~~c~~l~~ 415 (733)
+|+.|+|++|.+..+ +..+++|+.|+|+++ .+..
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCS
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCC-ccCC
Confidence 899999999876543 677899999999995 4553
No 151
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.83 E-value=2.6e-06 Score=85.69 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=43.4
Q ss_pred cccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEee
Q 004729 223 IRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNF 269 (733)
Q Consensus 223 ~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~l 269 (733)
.+..||+||+.+||+||+++|++++++|||+||.++.++.+|+.+-.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 46789999999999999999999999999999999999999987644
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.76 E-value=2.8e-05 Score=73.70 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=39.1
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
++|++|+|++|.+....+..+..+++|++|+|++|.+.......+..+++|++|+|++|.+..++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-------------- 98 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-------------- 98 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH--------------
Confidence 345555555555543333444445555555555554443333333344444444444444332221
Q ss_pred hHHHhhCCCCccEEEEec
Q 004729 392 MAQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~ 409 (733)
..+..+++|++|++++
T Consensus 99 --~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 99 --GAFDNLKSLTHIYLYN 114 (174)
T ss_dssp --TTTTTCTTCSEEECCS
T ss_pred --HHhccccCCCEEEeCC
Confidence 1244566677777766
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.73 E-value=3.4e-05 Score=72.75 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=39.5
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhcccCCCCcEEEEcCCc
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 391 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~~~~L~~L~L~~~~ 391 (733)
++|++|+|++|.+....+..+..+++|++|+|++|.+....+..+..+++|++|+|++|.+..++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-------------- 95 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-------------- 95 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH--------------
Confidence 345555555555543333444445555555555555443333333444445555554444332221
Q ss_pred hHHHhhCCCCccEEEEec
Q 004729 392 MAQAVLNCPLLHLLDIAS 409 (733)
Q Consensus 392 l~~~~~~~~~L~~L~L~~ 409 (733)
..+..+++|++|++++
T Consensus 96 --~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 96 --GAFDNLKSLTHIWLLN 111 (170)
T ss_dssp --TTTTTCTTCCEEECCS
T ss_pred --HHhcCCCCCCEEEeCC
Confidence 1244566677777766
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.71 E-value=0.00011 Score=79.32 Aligned_cols=99 Identities=21% Similarity=0.457 Sum_probs=69.6
Q ss_pred ecccCcCCceeeeccCccccccccccccHHHHHhcCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCcc
Q 004729 546 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTV 625 (733)
Q Consensus 546 ~l~~c~~L~~L~l~~n~L~~l~~~~~~~L~~l~~~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~ 625 (733)
.+.+|..|+.+.+..+- ..+. . ..+..|++|+.+.+.. .++......| .+|.+|+.+.|.. +++.
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~---~----~aF~~c~~L~~i~l~~--~i~~I~~~aF---~~c~~L~~i~lp~--~v~~ 324 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIG---T----GAFMNCPALQDIEFSS--RITELPESVF---AGCISLKSIDIPE--GITQ 324 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEEC---T----TTTTTCTTCCEEECCT--TCCEECTTTT---TTCTTCCEEECCT--TCCE
T ss_pred eeeecccccEEeccccc-ceec---C----cccccccccccccCCC--cccccCceee---cCCCCcCEEEeCC--cccE
Confidence 47889999999886542 2221 1 1234789999999964 5655444455 5799999999965 3555
Q ss_pred ccc----cCCCccEEeccccccccccc----cccccccEEeccc
Q 004729 626 VRF----CSTSLVSLSLVGCRAITALE----LKCPILEKVCLDG 661 (733)
Q Consensus 626 ~~~----~~~sL~~L~L~~c~~L~~l~----~~~p~L~~L~L~~ 661 (733)
++. .|.+|+++.|.. +++.+. .+|++|+.+++.+
T Consensus 325 I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 543 689999999954 355544 4799999999987
No 155
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.71 E-value=5e-06 Score=84.74 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=41.9
Q ss_pred ccccCCCHHHHHHHHhcCChhhHH-HHHHHHHHHHHhhcCCCCeeEE
Q 004729 222 EIRMDLTDDLLHMVFSFLDYVDLC-RAAIVCRQWRAASAHEDFWRCL 267 (733)
Q Consensus 222 ~~~~~LP~ElL~~If~~L~~~dl~-~~~lVck~W~~l~~~~~lw~~l 267 (733)
..+..||+|++.+||++|+.++++ +|++|||+|+.++.++.+|++.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 345689999999999999999999 9999999999999998888864
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.59 E-value=3.2e-05 Score=72.98 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ +.+.......+..+++|++|+|++|.++......+..+++|++|+|++|.+....+..+..+++|++|+
T Consensus 30 ~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 6789999988 455555556678899999999999999865555678899999999999998876666677788888888
Q ss_pred eecccc
Q 004729 367 ITKCRV 372 (733)
Q Consensus 367 L~~~~~ 372 (733)
+.+|++
T Consensus 109 L~~N~~ 114 (170)
T 3g39_A 109 LLNNPW 114 (170)
T ss_dssp CCSSCB
T ss_pred eCCCCC
Confidence 888764
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.56 E-value=3.7e-05 Score=72.89 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCchhHHHHHHhhcCCCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEE
Q 004729 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (733)
Q Consensus 287 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (733)
++++.|++++ +.+.......+..+++|++|+|++|.+.......+..+++|++|+|++|.+.......+..+++|++|+
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 6789999988 445555556678899999999999999865445567899999999999998866665677788888888
Q ss_pred eeccccc
Q 004729 367 ITKCRVM 373 (733)
Q Consensus 367 L~~~~~~ 373 (733)
+.+|++.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 8887653
No 158
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.30 E-value=4e-05 Score=84.17 Aligned_cols=53 Identities=15% Similarity=0.387 Sum_probs=47.3
Q ss_pred cccccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcC-CCCeeEEeeCC
Q 004729 219 EDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAH-EDFWRCLNFEN 271 (733)
Q Consensus 219 ~~~~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~-~~lw~~l~l~~ 271 (733)
...|++..||+|++.+||+||+.++++++++|||+|+.++.+ +.+|+++-+..
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 345888999999999999999999999999999999999988 89999876543
No 159
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.28 E-value=6e-05 Score=82.28 Aligned_cols=48 Identities=25% Similarity=0.630 Sum_probs=45.1
Q ss_pred ccccccCCCHH----HHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEE
Q 004729 220 DLEIRMDLTDD----LLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 267 (733)
Q Consensus 220 ~~~~~~~LP~E----lL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l 267 (733)
..|++..||+| ++.+||+||+..+++++++|||+|+.++.++.+|+.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 45888999999 9999999999999999999999999999999999976
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.24 E-value=9.8e-05 Score=78.13 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=68.1
Q ss_pred hhcCCCCCEEEecC-ccCChHHHHhccCCCCCcEEEEecCcCCcccccccccCCCccEEEeeccccchhccc---CCCCc
Q 004729 308 VSLLRNLEALTLGR-GQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR---CPQLE 383 (733)
Q Consensus 308 l~~l~~L~~L~Ls~-~~i~~~~~~~L~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~~~---~~~L~ 383 (733)
+..+.+|++|+|++ |.+....+..+..+++|+.|+|++|.+....+..+..+++|++|+|++|.+..++.. ...|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 77788899999996 888866667788899999999999998877777778899999999999988766532 12377
Q ss_pred EEEEcCCch
Q 004729 384 HLSLKRSNM 392 (733)
Q Consensus 384 ~L~L~~~~l 392 (733)
.|+|.+|.+
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 777777654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.19 E-value=0.0034 Score=67.02 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=36.3
Q ss_pred cCCCCcEEeecCCCCCChhhhhhhcCCCCCCCccEEEeecCCCCccccc----cCCCccEEeccccccccccc----ccc
Q 004729 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAITALE----LKC 651 (733)
Q Consensus 580 ~~~~L~~L~Ls~C~~lt~~~~~~~~~~~~l~~L~~L~L~~c~~L~~~~~----~~~sL~~L~L~~c~~L~~l~----~~~ 651 (733)
.|..|+.+.+.. .++......| ..+.+|+.+.+.. +++.++. .|.+|+.+.+.+ ..++.+. .+|
T Consensus 238 ~~~~L~~i~lp~--~v~~I~~~aF---~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c 309 (379)
T 4h09_A 238 GMKALDEIAIPK--NVTSIGSFLL---QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDC 309 (379)
T ss_dssp TCSSCCEEEECT--TCCEECTTTT---TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTC
T ss_pred CCccceEEEcCC--CccEeCcccc---ceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCC
Confidence 456666666654 2333222223 3456666666633 2333322 456666666644 2233332 356
Q ss_pred ccccEEecc
Q 004729 652 PILEKVCLD 660 (733)
Q Consensus 652 p~L~~L~L~ 660 (733)
.+|+++.|.
T Consensus 310 ~~L~~i~lp 318 (379)
T 4h09_A 310 VKLSSVTLP 318 (379)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEEcC
Confidence 666666664
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.15 E-value=0.00039 Score=73.40 Aligned_cols=93 Identities=23% Similarity=0.244 Sum_probs=71.9
Q ss_pred CEEEecCc-cCChHHHHhccCCCCCcEEEEec-CcCCcccccccccCCCccEEEeeccccchhc----ccCCCCcEEEEc
Q 004729 315 EALTLGRG-QLGDAFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 388 (733)
Q Consensus 315 ~~L~Ls~~-~i~~~~~~~L~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~L~~L~L~~~~~~~i~----~~~~~L~~L~L~ 388 (733)
..++++++ .+. .++. +..+++|++|+|++ |.+....+..+..+++|+.|+|++|.+..++ ..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677776 676 3555 88889999999996 8888766677788999999999999876544 568999999999
Q ss_pred CCchHHH----hhCCCCccEEEEecC
Q 004729 389 RSNMAQA----VLNCPLLHLLDIASC 410 (733)
Q Consensus 389 ~~~l~~~----~~~~~~L~~L~L~~c 410 (733)
+|.+..+ +..++ |+.|+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCC
Confidence 9887654 23333 999999884
No 163
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.13 E-value=0.00011 Score=80.18 Aligned_cols=49 Identities=33% Similarity=0.508 Sum_probs=44.6
Q ss_pred ccccccCCCHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcCCCCeeEEe
Q 004729 220 DLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLN 268 (733)
Q Consensus 220 ~~~~~~~LP~ElL~~If~~L~~~dl~~~~lVck~W~~l~~~~~lw~~l~ 268 (733)
..|.+..||+|++.+||+||+.++++++++|||+|+.++.++.+|+.+-
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 4577889999999999999999999999999999999999888898653
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.80 E-value=0.0083 Score=63.95 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=7.3
Q ss_pred hcCCCCcEEeccC
Q 004729 423 TSCPQLESLDMSN 435 (733)
Q Consensus 423 ~~~~~L~~L~L~~ 435 (733)
..|..|+.+.+..
T Consensus 155 ~~~~~l~~~~~~~ 167 (379)
T 4h09_A 155 YKAENLEKIEVSS 167 (379)
T ss_dssp TTCTTCCEEEECT
T ss_pred ccccccccccccc
Confidence 3456666665554
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.46 E-value=0.0023 Score=64.67 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=39.1
Q ss_pred hcCCCCCEEEecCccCCh--HHHHhccCCCCCcEEEEecCcCCcc--cccccccCCCccEEEeecccc
Q 004729 309 SLLRNLEALTLGRGQLGD--AFFHALADCSMLKSLNVNDATLGNG--VQEIPINHDQLRRLEITKCRV 372 (733)
Q Consensus 309 ~~l~~L~~L~Ls~~~i~~--~~~~~L~~~~~L~~L~L~~~~l~~~--~~~~~~~~~~L~~L~L~~~~~ 372 (733)
..+++|+.|+|++|.+.. .++..+..+++|+.|+|++|.+... +.. ...+ +|++|+|.+|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcC
Confidence 467888888888887765 3334455678888888888876643 111 1122 666666666654
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.28 E-value=0.00088 Score=67.71 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=32.0
Q ss_pred cCCCCCcEEEEecCcCCc--ccccccccCCCccEEEeeccccch
Q 004729 333 ADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVMR 374 (733)
Q Consensus 333 ~~~~~L~~L~L~~~~l~~--~~~~~~~~~~~L~~L~L~~~~~~~ 374 (733)
.++++|++|+|++|.+.. .++.....+++|+.|+|++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 468999999999998876 444555678888888888876653
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.98 E-value=0.016 Score=55.38 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=20.8
Q ss_pred hhCCCCccEEEEecCCCCChHHHHHH---HhcCCCCcEEeccCCCCCChhHHHH
Q 004729 396 VLNCPLLHLLDIASCHKLSDAAIRLA---ATSCPQLESLDMSNCSCVSDESLRE 446 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~~l~~~~l~~l---~~~~~~L~~L~L~~~~~l~~~~l~~ 446 (733)
...-+.|++|+|+++..+.+.+...+ +..-..|+.|+|++|. +.+.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~a 89 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARG 89 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTT
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHH
Confidence 33344455555544324444432222 2222345555555544 44444333
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.96 E-value=0.089 Score=50.17 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=23.1
Q ss_pred hhCCCCccEEEEecCC--CCChHH---HHHHHhcCCCCcEEeccCC
Q 004729 396 VLNCPLLHLLDIASCH--KLSDAA---IRLAATSCPQLESLDMSNC 436 (733)
Q Consensus 396 ~~~~~~L~~L~L~~c~--~l~~~~---l~~l~~~~~~L~~L~L~~~ 436 (733)
+..-+.|++|+|+++. .+.+.+ +...+..-+.|+.|+++.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 3344557777776532 345443 3444555567777777644
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.53 E-value=4.2 Score=35.55 Aligned_cols=35 Identities=11% Similarity=-0.038 Sum_probs=18.2
Q ss_pred CCcEEEEecCcCCcccccccccCCCccEEEeeccc
Q 004729 337 MLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371 (733)
Q Consensus 337 ~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~ 371 (733)
+|++|+|++|.+...-...+..+++|+.|+|.+|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555555554444444445555555555544
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=65.34 E-value=2.8 Score=36.75 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=31.3
Q ss_pred CCCCEEEecCccCChHHHHhccCCCCCcEEEEecCcCC
Q 004729 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 349 (733)
Q Consensus 312 ~~L~~L~Ls~~~i~~~~~~~L~~~~~L~~L~L~~~~l~ 349 (733)
++|++|+|++|.++......+..+++|++|+|.+|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47999999999988655556777899999999999764
No 171
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=29.26 E-value=16 Score=27.25 Aligned_cols=21 Identities=43% Similarity=0.778 Sum_probs=16.6
Q ss_pred ccCchhhhcCCCCCCchhhhc
Q 004729 10 TDDDEEEEQRPENSNSNKMKE 30 (733)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (733)
.|.|||||++|-.....||+-
T Consensus 6 ~DSDEEEe~~P~d~kkkKl~~ 26 (64)
T 1ko6_B 6 QDSDEEEEEHPSKTSTKKLKT 26 (64)
T ss_pred cccchhhhcCCCcchHHhhhc
Confidence 477888888888888788875
Done!