Your job contains 1 sequence.
>004730
MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPL
LTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKT
YDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDL
ILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA
AVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQL
DDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVA
GANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIIN
TEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALTGEI
ELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDR
EDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTME
ELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFRE
PGERLITGQNLFLDSSKDFSVKENSSDANQEGLDDAKMEEQIHGEADSETDRPTLVPCVS
GKYYFLKSLFYQY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004730
(733 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2168068 - symbol:GAF1 "AT5G59980" species:3702... 1095 8.7e-115 2
UNIPROTKB|E1BZ65 - symbol:RPP30 "Uncharacterized protein"... 365 8.1e-35 2
UNIPROTKB|F1SCX5 - symbol:RPP30 "Uncharacterized protein"... 371 2.1e-33 1
UNIPROTKB|Q3SZ21 - symbol:RPP30 "Ribonuclease P protein s... 368 4.6e-33 1
UNIPROTKB|J9NSV8 - symbol:RPP30 "Uncharacterized protein"... 368 4.6e-33 1
UNIPROTKB|F1MDQ8 - symbol:RPP30 "Ribonuclease P protein s... 365 9.7e-33 1
RGD|1595116 - symbol:Rpp30 "ribonuclease P/MRP subunit" s... 362 2.0e-32 1
MGI|MGI:1859683 - symbol:Rpp30 "ribonuclease P/MRP 30 sub... 361 2.6e-32 1
UNIPROTKB|P78346 - symbol:RPP30 "Ribonuclease P protein s... 359 4.3e-32 1
UNIPROTKB|Q5VU11 - symbol:RPP30 "Ribonuclease P protein s... 351 3.2e-31 1
ZFIN|ZDB-GENE-050320-45 - symbol:rpp30 "ribonuclease P/MR... 312 1.6e-29 2
UNIPROTKB|Q5VU10 - symbol:RPP30 "Ribonuclease P protein s... 313 4.2e-27 1
DICTYBASE|DDB_G0269980 - symbol:drpp30 "RNase MRP protein... 303 5.0e-26 1
POMBASE|SPAC3A12.04c - symbol:SPAC3A12.04c "RNase P and R... 275 1.3e-25 2
ASPGD|ASPL0000043636 - symbol:AN1486 species:162425 "Emer... 276 2.6e-25 2
SGD|S000001104 - symbol:RPP1 "Subunit of both RNase MRP a... 216 4.1e-20 2
UNIPROTKB|G4N6F7 - symbol:MGG_03733 "Ribonuclease P/MRP p... 213 5.2e-17 3
FB|FBgn0022246 - symbol:Rpp30 "RNaseP protein p30" specie... 215 7.5e-16 1
WB|WBGene00019264 - symbol:H35B03.2 species:6239 "Caenorh... 209 1.7e-13 2
CGD|CAL0001088 - symbol:orf19.1029 species:5476 "Candida ... 173 3.6e-10 1
SGD|S000002435 - symbol:REG1 "Regulatory subunit of type ... 130 0.00016 1
>TAIR|locus:2168068 [details] [associations]
symbol:GAF1 "AT5G59980" species:3702 "Arabidopsis
thaliana" [GO:0000213 "tRNA-intron endonuclease activity"
evidence=ISS] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008033 "tRNA processing"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009553
"embryo sac development" evidence=IMP] [GO:0048868 "pollen tube
development" evidence=IMP] [GO:0008295 "spermidine biosynthetic
process" evidence=RCA] InterPro:IPR002738 InterPro:IPR016195
Pfam:PF01876 GO:GO:0005739 GO:GO:0005634 EMBL:CP002688
GO:GO:0008033 GO:GO:0009553 GO:GO:0004540 GO:GO:0048868
SUPFAM:SSF89550 KO:K03539 PANTHER:PTHR13031 IPI:IPI00938888
RefSeq:NP_001154789.1 UniGene:At.29195 ProteinModelPortal:F4JXF0
PRIDE:F4JXF0 EnsemblPlants:AT5G59980.2 GeneID:836120
KEGG:ath:AT5G59980 OMA:DEMHITE ArrayExpress:F4JXF0 Uniprot:F4JXF0
Length = 705
Score = 1095 (390.5 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 213/393 (54%), Positives = 282/393 (71%)
Query: 1 MGFFDLNIPYVESPPSNATT---HKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCX 57
MGFFDL+IPY E P S K R+K+ KAMELGY G+A+NR++KGVMSD+D C
Sbjct: 1 MGFFDLSIPYNEPPRSGGKEIAGGKTLRLKLATKAMELGYVGIAHNRSIKGVMSDKDSCT 60
Query: 58 XXXXXXXXXXXXXXXXXXXVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPV 117
V FHRDLLGVPR +PFRQYTRLTV ++ AQCQ LNSGNP+
Sbjct: 61 IPLLTLGSLIKVAPRLASSVGFHRDLLGVPRTTPFRQYTRLTVHVESNAQCQSLNSGNPI 120
Query: 118 LKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTY 177
LK+YD++AVRP+NQ+AFD+ACEKAEVD+ISI+F +K+ FRLK PM+KAAI+RG+YFE+ Y
Sbjct: 121 LKSYDIIAVRPMNQNAFDYACEKAEVDLISIDFTDKMLFRLKHPMVKAAIQRGIYFEIKY 180
Query: 178 SDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMER 237
SD+++D Q RRQ+ISNAKLLVDWTRGKNLI+SSGA SVTELRGP DV NL LLG+S ER
Sbjct: 181 SDILMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSVTELRGPNDVINLMFLLGLSAER 240
Query: 238 AKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGD 297
A+AA+SKNCR +I+ L+KK FH+E +RVE +S+G+ F ++P S D +KWD +SSGEGD
Sbjct: 241 ARAAISKNCRNMIAKVLKKKRFHKEAVRVELLSAGDTFSLEQPLSEDCMKWDRLSSGEGD 300
Query: 298 LQLDDMAESFTAXXXXXXXXX-XINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSN 356
+ LDD+A++F A I+F SV+D +P H FRV D++ GT++V+ + +
Sbjct: 301 MLLDDLAKAFDATNVVAHKSSKAIDFTSVLDGLPKHGFRVKDIV-GTESVTQPSAAKVID 359
Query: 357 LFVAGANEKS---VASNGVSENRRRLDILHETD 386
V +N+ S +A+ +N R ++ + + D
Sbjct: 360 TQVHSSNQVSELRMATASSDDNLREIETISQID 392
Score = 57 (25.1 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 53/234 (22%), Positives = 87/234 (37%)
Query: 499 DTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDN-VSLTDNVI 557
DT S+ E + A +S D N+ E +ID+ ED DN V T NV+
Sbjct: 359 DTQVHSSNQVSELRMATASSDD----NLREIETISQIDMLMSED-----DNKVEPTTNVL 409
Query: 558 EREHFR-ELVDVVSGQNLLQGSHDEMDNKNGTSFANH---ETEVTMEELRDGERLREPGD 613
+ E F GQ +L + N+ T F ++E + + E E G
Sbjct: 410 KEEAFALRKCSASHGQGIL------VQNQTATPFTLTRCTKSEAASDVSMNIESTSEGGS 463
Query: 614 GRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFL 673
I +S E+ +++ + +E E+ G + +G + +
Sbjct: 464 MSPSKSDHGIPQSPVEVNNMGNAAFEEEASVDENSKERATTGHASNDEMHITESGHHASI 523
Query: 674 DSSKDFSVKEN------------SSDANQEGLDDAKMEEQIHGEADSETDRPTL 715
D K E+ SS+AN + + ME+Q+H DS+ P L
Sbjct: 524 DDEKHIPEPEHLTSIADEMKIDCSSEANHDEYMEVTMEDQMHETGDSKIILPNL 577
Score = 54 (24.1 bits), Expect = 1.8e-114, Sum P(2) = 1.8e-114
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 380 DILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTED----IESQPTIIEEDD 435
D +HET + + L+++++ + ESG S P+ ++ D +ES T +EE+
Sbjct: 562 DQMHETGDSKIILPNLSSETTDLLS--ESGK-SLSPDAVVQDHDEASRLESDETKLEEEA 618
Query: 436 VAEKSFTAKETERDDQNTKHGISSHAVD 463
T + T D++ + I V+
Sbjct: 619 SVPNHNTFEITMEDNKVEELTIEDEKVE 646
Score = 52 (23.4 bits), Expect = 2.9e-114, Sum P(2) = 2.9e-114
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 536 DIKDREDASVALDN---VSLTDN-----VIEREHFRELVDVVSGQNLLQGSHDEMDNKNG 587
+ K E+ASV N +++ DN IE E + S Q +Q S + D K+G
Sbjct: 611 ETKLEEEASVPNHNTFEITMEDNKVEELTIEDEKVEKTETEASHQAQVQSSENNNDTKSG 670
Query: 588 TSFANHETEVTMEELR 603
+ A + V + +LR
Sbjct: 671 KTQAKR-SRVRLPQLR 685
Score = 44 (20.5 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
Identities = 36/157 (22%), Positives = 62/157 (39%)
Query: 501 FHSSACHNEESKTAESSG-VDFDSQNVAMGEVGMKID----IKDREDASVALDNVSLTDN 555
F A +E SK ++G D ++ ID I + E + D + + D
Sbjct: 488 FEEEASVDENSKERATTGHASNDEMHITESGHHASIDDEKHIPEPEHLTSIADEMKI-DC 546
Query: 556 VIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGR 615
E H E ++V + H+ D+K N +E T + L + + P
Sbjct: 547 SSEANH-DEYMEVTMEDQM----HETGDSK--IILPNLSSETT-DLLSESGKSLSPDAVV 598
Query: 616 LLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQ 652
D+ S ES E +++++SV NH E M + +
Sbjct: 599 QDHDEASRLES-DETKLEEEASVPNHNTFEITMEDNK 634
Score = 38 (18.4 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 380 DILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETII---NTEDIESQPTIIEEDDV 436
D+L E+ ++ +A + + + + ES E + NT +I + +EE +
Sbjct: 583 DLLSESGKSLSPDAVVQDHDEA--SRLESDETKLEEEASVPNHNTFEITMEDNKVEELTI 640
Query: 437 AEKSFTAKETERDDQ 451
++ ETE Q
Sbjct: 641 EDEKVEKTETEASHQ 655
>UNIPROTKB|E1BZ65 [details] [associations]
symbol:RPP30 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 InterPro:IPR018130
Pfam:PF01876 PROSITE:PS00962 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0008033 GO:GO:0004540 SUPFAM:SSF89550 KO:K03539
OMA:TAFGIIS PANTHER:PTHR13031 GeneTree:ENSGT00390000000883
CTD:10556 EMBL:AADN02027737 IPI:IPI00584248 RefSeq:XP_421667.2
UniGene:Gga.9826 ProteinModelPortal:E1BZ65
Ensembl:ENSGALT00000010484 GeneID:423795 KEGG:gga:423795
NextBio:20826215 Uniprot:E1BZ65
Length = 267
Score = 365 (133.5 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 75/162 (46%), Positives = 101/162 (62%)
Query: 96 TRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLP 155
TRLT+ + C +L S + ++ YD++AV P + F AC +VD++ IN EKLP
Sbjct: 75 TRLTLVVSDPSHCNLLRSTSTNIRLYDIIAVFPKTEKLFHIACTTLDVDLVCINVTEKLP 134
Query: 156 FRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSV 215
F + P + AI+RG+YFEL Y+ I D +RR ISNA L+ +GKN+++SS A
Sbjct: 135 FYFRRPPVNMAIDRGIYFELLYTPAIKDSTMRRYTISNAISLMQICKGKNIVISSAAERP 194
Query: 216 TELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKK 257
ELRGPYDVANL L G+S AKAAVS NCRA I + +K
Sbjct: 195 LELRGPYDVANLGLLFGLSEGEAKAAVSTNCRATILHGETRK 236
Score = 43 (20.2 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 2 GFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYN 43
GF DLN+P + A ++ A LGY+ VA N
Sbjct: 3 GFADLNVPQ--------GADRKAIQSLLEAAAHLGYSAVALN 36
>UNIPROTKB|F1SCX5 [details] [associations]
symbol:RPP30 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008033 "tRNA processing" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033 GO:GO:0004540
SUPFAM:SSF89550 KO:K03539 OMA:TAFGIIS PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 CTD:10556 EMBL:CT954288 EMBL:CU468426
RefSeq:XP_001924806.1 UniGene:Ssc.43882 ProteinModelPortal:F1SCX5
Ensembl:ENSSSCT00000011446 GeneID:100156540 KEGG:ssc:100156540
Uniprot:F1SCX5
Length = 268
Score = 371 (135.7 bits), Expect = 2.1e-33, P = 2.1e-33
Identities = 87/194 (44%), Positives = 111/194 (57%)
Query: 88 RCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIIS 147
+ P + TRLT+ + C VL + + ++ YD++AV P + F AC +VDI+
Sbjct: 67 KSKPIKILTRLTIIVSDPSHCNVLRTTSSRVRLYDIIAVFPKTEKLFHVACTHLDVDIVC 126
Query: 148 INFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLI 207
I EKLPF K P I AI+RGV FEL YS I D +RR ISNA L+ +GKN+I
Sbjct: 127 ITVTEKLPFYFKRPPINVAIDRGVAFELVYSPAIKDSTMRRYTISNALNLMQICKGKNVI 186
Query: 208 LSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRV 266
+SS A E+RGPYDVANL L G+S AKAAVS NCRA L+ RK F +
Sbjct: 187 VSSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAFGIISTVK 246
Query: 267 EPISSGEQFDSKEP 280
+P SS E D P
Sbjct: 247 KPRSS-ETDDESLP 259
>UNIPROTKB|Q3SZ21 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0004526 "ribonuclease P activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 GO:GO:0005730 GO:GO:0008033
SUPFAM:SSF89550 GO:GO:0004526 eggNOG:COG1603 KO:K03539
HOGENOM:HOG000157793 PANTHER:PTHR13031 EMBL:BC103240
IPI:IPI00713952 RefSeq:NP_001030538.1 UniGene:Bt.48969
ProteinModelPortal:Q3SZ21 STRING:Q3SZ21 GeneID:615098
KEGG:bta:615098 CTD:10556 HOVERGEN:HBG010226 InParanoid:Q3SZ21
OrthoDB:EOG4D52Z9 NextBio:20899443 Uniprot:Q3SZ21
Length = 268
Score = 368 (134.6 bits), Expect = 4.6e-33, P = 4.6e-33
Identities = 85/191 (44%), Positives = 110/191 (57%)
Query: 88 RCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIIS 147
+ P + TRLT+ + C VL + + ++ YD+VAV P + F AC +VD++
Sbjct: 67 KSKPIKILTRLTIIVSDPSHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVC 126
Query: 148 INFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLI 207
I EKLPF K P I AI+RGV FEL YS I D +RR ISNA L+ +GKN+I
Sbjct: 127 ITVTEKLPFYFKRPPINVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVI 186
Query: 208 LSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRV 266
+SS A E+RGPYDVANL L G+S AKAAVS NCRA L+ RK F +
Sbjct: 187 ISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAFGIISTVK 246
Query: 267 EPISSGEQFDS 277
+P +S DS
Sbjct: 247 KPRTSEADDDS 257
>UNIPROTKB|J9NSV8 [details] [associations]
symbol:RPP30 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033
GO:GO:0004540 SUPFAM:SSF89550 KO:K03539 OMA:TAFGIIS
PANTHER:PTHR13031 GeneTree:ENSGT00390000000883 CTD:10556
EMBL:AAEX03015400 RefSeq:XP_534959.2 ProteinModelPortal:J9NSV8
Ensembl:ENSCAFT00000046379 GeneID:477763 KEGG:cfa:477763
Uniprot:J9NSV8
Length = 268
Score = 368 (134.6 bits), Expect = 4.6e-33, P = 4.6e-33
Identities = 80/170 (47%), Positives = 102/170 (60%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ + C VL + + ++ YD+VAV P + F AC +VD++ I
Sbjct: 70 PIKVLTRLTIIVSDPSHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVCITV 129
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P I A++RGV FEL YS I D +RR ISNA L+ +GKN+I+SS
Sbjct: 130 TEKLPFYFKRPPINVAVDRGVCFELVYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISS 189
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHF 259
A E+RGPYDVANL L G+S AKAAVS NCRA L+ RK F
Sbjct: 190 AAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAF 239
>UNIPROTKB|F1MDQ8 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9913 "Bos taurus" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033
GO:GO:0004540 SUPFAM:SSF89550 OMA:TAFGIIS PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 IPI:IPI00713952 UniGene:Bt.48969
EMBL:DAAA02058784 ProteinModelPortal:F1MDQ8
Ensembl:ENSBTAT00000003871 Uniprot:F1MDQ8
Length = 268
Score = 365 (133.5 bits), Expect = 9.7e-33, P = 9.7e-33
Identities = 84/191 (43%), Positives = 110/191 (57%)
Query: 88 RCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIIS 147
+ P + TRLT+ + C VL + + ++ YD+VAV P + F AC +VD++
Sbjct: 67 KSKPIKILTRLTIIVSDPSHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVC 126
Query: 148 INFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLI 207
I EKLPF K P I AI+RGV FEL YS I D +RR ISNA L+ +GKN+I
Sbjct: 127 ITVTEKLPFYFKRPPINVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVI 186
Query: 208 LSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRV 266
+SS A E+RGPYDVANL L G+S AKAA+S NCRA L+ RK F +
Sbjct: 187 ISSAAERPLEIRGPYDVANLGLLFGLSESDAKAALSTNCRAVLLHGETRKTAFGIISTVK 246
Query: 267 EPISSGEQFDS 277
+P +S DS
Sbjct: 247 KPRTSEADDDS 257
>RGD|1595116 [details] [associations]
symbol:Rpp30 "ribonuclease P/MRP subunit" species:10116 "Rattus
norvegicus" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 RGD:1595116 GO:GO:0008033
GO:GO:0004540 SUPFAM:SSF89550 KO:K03539 OMA:TAFGIIS
PANTHER:PTHR13031 GeneTree:ENSGT00390000000883 CTD:10556
OrthoDB:EOG4D52Z9 IPI:IPI00368202 RefSeq:NP_001178012.1
UniGene:Rn.17421 ProteinModelPortal:D3ZU51
Ensembl:ENSRNOT00000025412 GeneID:685332 KEGG:rno:685332
UCSC:RGD:1595116 NextBio:729460 Uniprot:D3ZU51
Length = 268
Score = 362 (132.5 bits), Expect = 2.0e-32, P = 2.0e-32
Identities = 83/188 (44%), Positives = 107/188 (56%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ + C VL + + ++ YD+VAV P + F AC +VD++ I
Sbjct: 70 PIKILTRLTIIVTDPSHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVCITV 129
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P I AIERG+ FEL Y I D +RR ISNA L+ +GKN+ILSS
Sbjct: 130 TEKLPFYFKRPPINVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSS 189
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPI 269
A E+RGPYDVANL L G+S KAAVS NCRA + RK F + +P
Sbjct: 190 AAERPLEIRGPYDVANLGLLFGLSENEGKAAVSTNCRAAFLHGETRKTAFGIISTVKKPR 249
Query: 270 SSGEQFDS 277
SS + +S
Sbjct: 250 SSEAEDES 257
>MGI|MGI:1859683 [details] [associations]
symbol:Rpp30 "ribonuclease P/MRP 30 subunit" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004526
"ribonuclease P activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 MGI:MGI:1859683
GO:GO:0005730 GO:GO:0008033 SUPFAM:SSF89550 GO:GO:0004526
eggNOG:COG1603 KO:K03539 HOGENOM:HOG000157793 OMA:TAFGIIS
PANTHER:PTHR13031 GeneTree:ENSGT00390000000883 CTD:10556
HOVERGEN:HBG010226 OrthoDB:EOG4D52Z9 EMBL:U95123 IPI:IPI00134346
RefSeq:NP_062301.3 UniGene:Mm.277891 ProteinModelPortal:O88796
STRING:O88796 PhosphoSite:O88796 PaxDb:O88796 PRIDE:O88796
Ensembl:ENSMUST00000025714 GeneID:54364 KEGG:mmu:54364
UCSC:uc008hhg.2 InParanoid:O88796 NextBio:311154 Bgee:O88796
CleanEx:MM_RPP30 Genevestigator:O88796
GermOnline:ENSMUSG00000024800 Uniprot:O88796
Length = 268
Score = 361 (132.1 bits), Expect = 2.6e-32, P = 2.6e-32
Identities = 79/170 (46%), Positives = 100/170 (58%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ A C VL + + ++ YD+VAV P + F AC +VD++ I
Sbjct: 70 PIKILTRLTIIVTDPAHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVCITV 129
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P + AIERG+ FEL Y I D +RR ISNA L+ +GKN+ILSS
Sbjct: 130 TEKLPFYFKRPPVNVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSS 189
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRAL-ISNALRKKHF 259
A E+RGPYDVANL L G+S KAAVS NCRA+ + RK F
Sbjct: 190 AAERPLEIRGPYDVANLGLLFGLSENDGKAAVSTNCRAVFLHGETRKTAF 239
>UNIPROTKB|P78346 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9606 "Homo sapiens" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0004526 "ribonuclease P activity" evidence=IEA]
[GO:0005655 "nucleolar ribonuclease P complex" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 EMBL:CH471066 GO:GO:0008033
EMBL:AL590622 SUPFAM:SSF89550 GO:GO:0005655 GO:GO:0004526
eggNOG:COG1603 KO:K03539 HOGENOM:HOG000157793 PANTHER:PTHR13031
CTD:10556 HOVERGEN:HBG010226 OrthoDB:EOG4D52Z9 EMBL:U77665
EMBL:AK312900 EMBL:AK225532 EMBL:BC006991 IPI:IPI00019196
IPI:IPI00876864 RefSeq:NP_001098016.1 RefSeq:NP_006404.1
UniGene:Hs.139120 ProteinModelPortal:P78346 IntAct:P78346
STRING:P78346 PhosphoSite:P78346 DMDM:13124514 PaxDb:P78346
PRIDE:P78346 DNASU:10556 Ensembl:ENST00000371703
Ensembl:ENST00000413330 GeneID:10556 KEGG:hsa:10556 UCSC:uc009xtx.3
GeneCards:GC10P092621 HGNC:HGNC:17688 HPA:HPA037578 MIM:606115
neXtProt:NX_P78346 PharmGKB:PA134876345 PhylomeDB:P78346
GenomeRNAi:10556 NextBio:40053 ArrayExpress:P78346 Bgee:P78346
CleanEx:HS_RPP30 Genevestigator:P78346 GermOnline:ENSG00000148688
Uniprot:P78346
Length = 268
Score = 359 (131.4 bits), Expect = 4.3e-32, P = 4.3e-32
Identities = 82/186 (44%), Positives = 108/186 (58%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ + C VL + + + YD+VAV P + F AC +VD++ I
Sbjct: 70 PIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITV 129
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P I AI+RG+ FEL YS I D +RR IS+A L+ +GKN+I+SS
Sbjct: 130 TEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISS 189
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHR-ETIRVEP 268
A E+RGPYDVANL L G+S AKAAVS NCRA L+ RK F T++
Sbjct: 190 AAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFGIISTVKKPR 249
Query: 269 ISSGEQ 274
S G++
Sbjct: 250 PSEGDE 255
>UNIPROTKB|Q5VU11 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9606 "Homo sapiens" [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033
GO:GO:0004540 EMBL:AL590622 SUPFAM:SSF89550 HOGENOM:HOG000157793
PANTHER:PTHR13031 HOVERGEN:HBG010226 UniGene:Hs.139120
HGNC:HGNC:17688 IPI:IPI00478229 Ensembl:ENST00000277882
Uniprot:Q5VU11
Length = 254
Score = 351 (128.6 bits), Expect = 3.2e-31, P = 3.2e-31
Identities = 75/160 (46%), Positives = 97/160 (60%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ + C VL + + + YD+VAV P + F AC +VD++ I
Sbjct: 92 PIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITV 151
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P I AI+RG+ FEL YS I D +RR IS+A L+ +GKN+I+SS
Sbjct: 152 TEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISS 211
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALI 250
A E+RGPYDVANL L G+S AKAAVS NCRA +
Sbjct: 212 AAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAAL 251
>ZFIN|ZDB-GENE-050320-45 [details] [associations]
symbol:rpp30 "ribonuclease P/MRP 30 subunit"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002738 InterPro:IPR016195
InterPro:IPR018130 Pfam:PF01876 PROSITE:PS00962
ZFIN:ZDB-GENE-050320-45 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008033 GO:GO:0004540 SUPFAM:SSF89550 eggNOG:COG1603
KO:K03539 HOGENOM:HOG000157793 OMA:TAFGIIS PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 CTD:10556 HOVERGEN:HBG010226
OrthoDB:EOG4D52Z9 EMBL:CU607074 EMBL:BC091449 IPI:IPI00495944
RefSeq:NP_001013497.1 UniGene:Dr.80180 STRING:Q5BJK2 DNASU:541352
Ensembl:ENSDART00000037601 GeneID:541352 KEGG:dre:541352
InParanoid:Q5BJK2 NextBio:20879166 Uniprot:Q5BJK2
Length = 265
Score = 312 (114.9 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 70/163 (42%), Positives = 95/163 (58%)
Query: 88 RCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIIS 147
+ SP + RLT+ A + + N K +DLVAV P + F AC +VDII
Sbjct: 67 KSSPIKVLNRLTIVASDASHFRPTNE----YKKFDLVAVYPKTEKLFHAACMTFDVDIIC 122
Query: 148 INFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLI 207
I EK PF K + AI+RG++FE Y+ I D RR I+NA L++ +GKN+I
Sbjct: 123 IAVTEKQPFHFKRAPVNGAIDRGIFFETCYAAAIRDSITRRYTIANAICLMEICKGKNVI 182
Query: 208 LSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALI 250
+SSGA ELRGPYD+ANL + +S AKAAVS NCR+++
Sbjct: 183 VSSGAERQLELRGPYDIANLGLVFSLSEGDAKAAVSTNCRSVL 225
Score = 48 (22.0 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 3 FFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRD 54
F DLNI + S N H I+ A LGY+ VA N ++ + ++
Sbjct: 4 FMDLNI--INSSDKNRLKH------IIETAAHLGYSTVAINYVVEPLQKKQE 47
>UNIPROTKB|Q5VU10 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9606 "Homo sapiens" [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033
GO:GO:0004540 EMBL:AL590622 SUPFAM:SSF89550 HOGENOM:HOG000157793
PANTHER:PTHR13031 HOVERGEN:HBG010226 UniGene:Hs.139120
HGNC:HGNC:17688 Ensembl:ENST00000414836 Uniprot:Q5VU10
Length = 212
Score = 313 (115.2 bits), Expect = 4.2e-27, P = 4.2e-27
Identities = 78/186 (41%), Positives = 102/186 (54%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ + C VL + + + YD+VAV P + F AC +VD++ I
Sbjct: 24 PIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITV 83
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P I AI+RG+ FEL YS I D +RR IS+A L+ +GK L
Sbjct: 84 TEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKPL---- 139
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHR-ETIRVEP 268
E+RGPYDVANL L G+S AKAAVS NCRA L+ RK F T++
Sbjct: 140 ------EIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFGIISTVKKPR 193
Query: 269 ISSGEQ 274
S G++
Sbjct: 194 PSEGDE 199
>DICTYBASE|DDB_G0269980 [details] [associations]
symbol:drpp30 "RNase MRP protein subunit"
species:44689 "Dictyostelium discoideum" [GO:0004526 "ribonuclease
P activity" evidence=IEA;IDA] [GO:0008033 "tRNA processing"
evidence=IEA;IDA] [GO:0005655 "nucleolar ribonuclease P complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IPI] [GO:0000049
"tRNA binding" evidence=IDA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000171 "ribonuclease MRP activity" evidence=ISS] [GO:0006364
"rRNA processing" evidence=ISS] [GO:0000172 "ribonuclease MRP
complex" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876
dictyBase:DDB_G0269980 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0008033 GO:GO:0000049 GO:GO:0006364 SUPFAM:SSF89550
GO:GO:0005655 GO:GO:0000172 GO:GO:0004526 KO:K03539
PANTHER:PTHR13031 EMBL:AY940192 RefSeq:XP_646444.1
ProteinModelPortal:Q3ZE13 EnsemblProtists:DDB0232069 GeneID:8617403
KEGG:ddi:DDB_G0269980 eggNOG:NOG273171 OMA:VICKTMA Uniprot:Q3ZE13
Length = 366
Score = 303 (111.7 bits), Expect = 5.0e-26, P = 5.0e-26
Identities = 81/259 (31%), Positives = 133/259 (51%)
Query: 1 MGFFDLNIPYVESPPSNATTHKNARVKIVIKA-MELGYTGVAYNRTMKGVMSDRDRCXXX 59
M ++DLNI S P ++K ++ + GY VA T++G + +D C
Sbjct: 1 MVYYDLNID--SSLPE-------PKIKSMLSLHTKYGYDSVAITHTVEGKIGYKDVCKIK 51
Query: 60 XXXXXXXXXXXXXXXXXVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLK 119
+G +QYTRL V T+A+ Q++ + NPV++
Sbjct: 52 KIQIEDDSEKSTSSGWMK------MGDSN-KTIKQYTRLQVICKTMAEFQMITANNPVVQ 104
Query: 120 TYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSD 179
+YD+++V P + S F+ AC E+DII+I+ K F +K ++ I +G++ E+ Y +
Sbjct: 105 SYDIISVVPYDVSVFNAACNSNEIDIITIDTFSK--FIIKPERVRQCIAKGIFIEILYGN 162
Query: 180 LI-LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERA 238
L +D R A LV + GKN+ILSS S T LR PYD++NL L G++ ++A
Sbjct: 163 LFGIDAD-RIAFFQIASSLVRSSFGKNIILSSSGKSSTTLRSPYDLSNLGHLFGLTFDQA 221
Query: 239 KAAVSKNCRALISNALRKK 257
KAAVSK+ + +A+ ++
Sbjct: 222 KAAVSKHPHTAVLHAITRR 240
>POMBASE|SPAC3A12.04c [details] [associations]
symbol:SPAC3A12.04c "RNase P and RNase MRP subunit p30
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000172
"ribonuclease MRP complex" evidence=ISO] [GO:0005655 "nucleolar
ribonuclease P complex" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0008033 "tRNA processing" evidence=ISO]
[GO:0000171 "ribonuclease MRP activity" evidence=ISO] [GO:0004526
"ribonuclease P activity" evidence=ISO] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 PomBase:SPAC3A12.04c EMBL:CU329670
GO:GO:0008033 GO:GO:0006364 SUPFAM:SSF89550 GO:GO:0005655
GO:GO:0000172 GO:GO:0004526 eggNOG:COG1603 KO:K03539 PIR:T38672
RefSeq:NP_593330.1 ProteinModelPortal:P87120 STRING:P87120
EnsemblFungi:SPAC3A12.04c.1 GeneID:2543062 KEGG:spo:SPAC3A12.04c
HOGENOM:HOG000157793 OMA:TAFGIIS OrthoDB:EOG4KPXMF NextBio:20804091
PANTHER:PTHR13031 Uniprot:P87120
Length = 235
Score = 275 (101.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 55/170 (32%), Positives = 104/170 (61%)
Query: 95 YTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKL 154
Y+R+T+ +++ Q +VL++ V K +D++A+RP+ C E DI+SI+F ++L
Sbjct: 65 YSRITLTIESMPQNKVLSN---VTKEFDILAIRPIGDRLLQQTCSDLEFDILSIDFTQRL 121
Query: 155 PFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASS 214
PF LK + A+ R + E++YS + DV RR +I+NA LV TRG+ +I++S +
Sbjct: 122 PFYLKHTFMGLAVSRDIGIEISYSSGLRDVSNRRNLITNATSLVRATRGRGIIVTSETRT 181
Query: 215 VTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETI 264
E R +DV NL++ + ++A+ +V ++CR+++ +A ++ +R +
Sbjct: 182 PLECRAGFDVINLATFWDLKQDQARKSVGESCRSVLLHAETRRDTYRSIL 231
Score = 49 (22.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 3 FFDLNIPYVESPPSNATTHKNARVKIVIKAME-LGYTGVAYNRTMKGVMSD 52
F DLN+ + P+ N VK V K +E LGYT +A N G + +
Sbjct: 2 FIDLNVVW----PTLGVKDLNL-VKTV-KTLERLGYTAIALNYQYDGKLQN 46
>ASPGD|ASPL0000043636 [details] [associations]
symbol:AN1486 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876
EMBL:BN001307 GO:GO:0008033 GO:GO:0004540 EMBL:AACD01000022
SUPFAM:SSF89550 eggNOG:COG1603 KO:K03539 HOGENOM:HOG000157793
OrthoDB:EOG4KPXMF PANTHER:PTHR13031 RefSeq:XP_659090.1
ProteinModelPortal:Q5BD94 EnsemblFungi:CADANIAT00008108
GeneID:2874596 KEGG:ani:AN1486.2 OMA:QVISHAR Uniprot:Q5BD94
Length = 306
Score = 276 (102.2 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 67/173 (38%), Positives = 97/173 (56%)
Query: 96 TRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLP 155
TRL + AQ Q L S + + YDLVAVRP N+ A +AC AE DIIS++ + + P
Sbjct: 56 TRLNIPLSDPAQNQRLTS---IAQAYDLVAVRPTNEKALLNACTNAECDIISLDLSIRHP 112
Query: 156 FRLKLPMIKAAIERGVYFELTYSDLILD--VQLRRQMISNAKLLVDWTRGKNLILSSGAS 213
+ K M+ AAI RG+ FE+ Y + ++ RR +I NA L+ RG+ +I+SS A
Sbjct: 113 YHFKFKMLSAAIARGIRFEICYGPGVTGSGLEARRNLIGNAMALIRAARGRGIIVSSEAK 172
Query: 214 SVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRV 266
+R P+DV NL+ + G+S E K A+S R + + A K+ R I V
Sbjct: 173 RALGVRAPFDVINLACVWGLSQELGKEAISAETRKVTALARLKRTSWRGIIDV 225
Score = 45 (20.9 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 3 FFDLNIPYVESPPSNATT 20
++DLN+PY P + T
Sbjct: 2 YYDLNVPYSPGDPEISAT 19
>SGD|S000001104 [details] [associations]
symbol:RPP1 "Subunit of both RNase MRP and nuclear RNase P"
species:4932 "Saccharomyces cerevisiae" [GO:0004526 "ribonuclease P
activity" evidence=IEA;IDA;IMP] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000171 "ribonuclease MRP activity" evidence=IMP;IDA]
[GO:0008033 "tRNA processing" evidence=IEA;IDA;IMP] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005655 "nucleolar ribonuclease P
complex" evidence=IDA;IPI] [GO:0034965 "intronic box C/D snoRNA
processing" evidence=IDA] [GO:0006379 "mRNA cleavage" evidence=IPI]
[GO:0000172 "ribonuclease MRP complex" evidence=IDA;IPI]
[GO:0006364 "rRNA processing" evidence=IEA;IDA;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 SGD:S000001104 EMBL:BK006934
GO:GO:0008033 GO:GO:0006364 GO:GO:0006379 EMBL:U00061
SUPFAM:SSF89550 GO:GO:0005655 GO:GO:0000172 GO:GO:0004526
GO:GO:0034965 eggNOG:COG1603 KO:K03539 HOGENOM:HOG000157793
OrthoDB:EOG4KPXMF PANTHER:PTHR13031 EMBL:U95757 PIR:S46710
RefSeq:NP_011929.1 ProteinModelPortal:P38786 DIP:DIP-5590N
IntAct:P38786 MINT:MINT-501586 STRING:P38786 PaxDb:P38786
EnsemblFungi:YHR062C GeneID:856459 KEGG:sce:YHR062C CYGD:YHR062c
GeneTree:ENSGT00390000000883 OMA:RITILYV NextBio:982102
Genevestigator:P38786 GermOnline:YHR062C Uniprot:P38786
Length = 293
Score = 216 (81.1 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 46/170 (27%), Positives = 89/170 (52%)
Query: 95 YTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKL 154
Y+R+T+ D ++ Q L+ + + +D+VA P+++ + ++D+++ + +L
Sbjct: 81 YSRITLIIDDPSKGQSLSK---ISQAFDIVAALPISEKGLTLSTTNLDIDLLTFQYGSRL 137
Query: 155 PFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASS 214
P LK I + + RGV E+ Y + DVQ RRQ +SN + ++ +R + +++ SGA S
Sbjct: 138 PTFLKHKSICSCVNRGVKLEIVYGYALRDVQARRQFVSNVRSVIRSSRSRGIVIGSGAMS 197
Query: 215 VTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETI 264
E R V +L LG+ +R A+ ++ N + H++TI
Sbjct: 198 PLECRNILGVTSLIKNLGLPSDRCSKAMGDLASLVLLNGRLRNKSHKQTI 247
Score = 57 (25.1 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 5 DLNIPYVESPPSNATTHK--NARVKIVIKAMELGYTGVAYNRTM 46
DLN+P+ ++ ++ T + N +K + LGYT +A N T+
Sbjct: 4 DLNVPWPQNSYADKVTSQAVNNLIKTLSTLHMLGYTHIAINFTV 47
>UNIPROTKB|G4N6F7 [details] [associations]
symbol:MGG_03733 "Ribonuclease P/MRP protein subunit RPP1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033 GO:GO:0004540
EMBL:CM001234 SUPFAM:SSF89550 KO:K03539 PANTHER:PTHR13031
RefSeq:XP_003716146.1 EnsemblFungi:MGG_03733T0 GeneID:2676784
KEGG:mgr:MGG_03733 Uniprot:G4N6F7
Length = 314
Score = 213 (80.0 bits), Expect = 5.2e-17, Sum P(3) = 5.2e-17
Identities = 55/155 (35%), Positives = 87/155 (56%)
Query: 117 VLKTYDLVAVRPLNQSAFDHACEK-AEVDIISINFAEKLPFRLKLPMIKAAIERGVYFEL 175
V +D++AVRP+N+ AF+HAC AE I++++ A L F + + AA+ RGV E+
Sbjct: 84 VAAAFDILAVRPMNEVAFNHACVNLAEPSILTLDLAANLGFYFRPKSVMAAVRRGVRIEI 143
Query: 176 TYSDLI--LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTE--LRGPYDVANLSSLL 231
Y+ I D + R ++N L ++G+ LI+SSGA++ + LR P DV NL ++
Sbjct: 144 CYTQGIGARDSRARALFVANLVGLFRASKGRGLIVSSGAAAGSPRLLRAPADVVNLLAVW 203
Query: 232 GISMERAKAAVSKNCRALISNALRKKHFHRETIRV 266
G+ ER +S N R ++ N K+ R I V
Sbjct: 204 GMGTERGLDTLSGNPRGVVVNEGIKRSAFRGVIDV 238
Score = 46 (21.3 bits), Expect = 5.2e-17, Sum P(3) = 5.2e-17
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 557 IEREHFRELVDVVSGQNLLQGSHDEMDNKNGT 588
I+R FR ++DVV G L H + + GT
Sbjct: 227 IKRSAFRGVIDVVHGAGALD-CHGKGSDAAGT 257
Score = 42 (19.8 bits), Expect = 5.2e-17, Sum P(3) = 5.2e-17
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 4 FDLNIPYVESPPSNATTHKNARVKIVIK-AMELGYTGVAYNRTM 46
+DLNI + S ++A +++ ++ A LGY VA N T+
Sbjct: 3 YDLNINWAPSTTASA-------LEVTLRQAAVLGYDVVAINHTI 39
>FB|FBgn0022246 [details] [associations]
symbol:Rpp30 "RNaseP protein p30" species:7227 "Drosophila
melanogaster" [GO:0008033 "tRNA processing" evidence=IEA;ISS]
[GO:0030677 "ribonuclease P complex" evidence=ISS] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876
EMBL:AE014134 GO:GO:0022008 GO:GO:0008033 GO:GO:0004540
SUPFAM:SSF89550 eggNOG:COG1603 KO:K03539 PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 OMA:RITILYV CTD:10556 GO:GO:0030677
EMBL:AY075315 RefSeq:NP_524749.1 UniGene:Dm.1833 IntAct:Q9VPM0
MINT:MINT-899899 STRING:Q9VPM0 EnsemblMetazoa:FBtr0078143
GeneID:44392 KEGG:dme:Dmel_CG11606 UCSC:CG11606-RA
FlyBase:FBgn0022246 InParanoid:Q9VPM0 OrthoDB:EOG4KWH8J
GenomeRNAi:44392 NextBio:837231 Uniprot:Q9VPM0
Length = 297
Score = 215 (80.7 bits), Expect = 7.5e-16, P = 7.5e-16
Identities = 47/136 (34%), Positives = 75/136 (55%)
Query: 118 LKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTY 177
L+ ++L+A +P +A H C D+I+ + + + A+ RG++FE+ Y
Sbjct: 99 LRKFNLIAGQPKTDAALTHCCTAFNGDLITFDPVAGSRLLVNRKAYQVAVRRGMFFEIKY 158
Query: 178 SDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMER 237
+ I D R+ MI A+ + KN+I SSGA+ +LRGPYDVANL+ + G+S ++
Sbjct: 159 APSICDSNNRKDMIKIAQNYCTKGKSKNVIFSSGAAHEFQLRGPYDVANLAFIFGLSEDQ 218
Query: 238 AKAAVSKNCRALISNA 253
K AV +CR L A
Sbjct: 219 GKNAVDGHCRELFLKA 234
>WB|WBGene00019264 [details] [associations]
symbol:H35B03.2 species:6239 "Caenorhabditis elegans"
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR002738 InterPro:IPR016195
Pfam:PF01876 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0000003 GO:GO:0008033 GO:GO:0004540
SUPFAM:SSF89550 eggNOG:COG1603 KO:K03539 PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 EMBL:FO080871 PIR:T33715
RefSeq:NP_500852.1 UniGene:Cel.18199 ProteinModelPortal:Q9TYZ2
PaxDb:Q9TYZ2 PRIDE:Q9TYZ2 EnsemblMetazoa:H35B03.2a GeneID:177349
KEGG:cel:CELE_H35B03.2 UCSC:H35B03.2a CTD:177349 WormBase:H35B03.2a
HOGENOM:HOG000021740 InParanoid:Q9TYZ2 OMA:HMEFTPM NextBio:896388
ArrayExpress:Q9TYZ2 Uniprot:Q9TYZ2
Length = 393
Score = 209 (78.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 53/159 (33%), Positives = 92/159 (57%)
Query: 92 FRQYTRLTVFADTIAQCQVLNSG--NPVLKTYDLVAVRPLNQSAFDHACEKAEV-DIISI 148
FRQ++R+T A+ + V+N +P + +YD+VAVRP S D K E+ DII+I
Sbjct: 142 FRQFSRITFTAN---EQVVINKVFIHPTILSYDIVAVRPGEPSVLDTLSRKTELFDIITI 198
Query: 149 NFAEKLPFRLKLPMIKAAIER----GVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGK 204
+ E+ R K + ++R GV++E+ Y++ ++ R+ + N ++L+ + K
Sbjct: 199 DHLEEE--RRKWLSVSKVMDRIRNDGVFYEIAYAESLMPAT-RKNTLFNGRVLIRSLKSK 255
Query: 205 NLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVS 243
N+I SSGA ++ +LR P DV N+S L G++ A+ +S
Sbjct: 256 NIIFSSGAETMLDLRSPVDVMNMSLLWGVANNEARKMIS 294
Score = 39 (18.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 28 IVIKAMELGYTGVAYNRTMKGVMSD 52
+V +A+ +GY VA N + G +SD
Sbjct: 48 MVRRAIRMGYDAVAINIDL-GDISD 71
>CGD|CAL0001088 [details] [associations]
symbol:orf19.1029 species:5476 "Candida albicans" [GO:0000172
"ribonuclease MRP complex" evidence=IEA] [GO:0005655 "nucleolar
ribonuclease P complex" evidence=IEA] [GO:0000171 "ribonuclease MRP
activity" evidence=IEA] [GO:0004526 "ribonuclease P activity"
evidence=IEA] [GO:0034965 "intronic box C/D snoRNA processing"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876
CGD:CAL0001088 EMBL:AACQ01000121 GO:GO:0008033 GO:GO:0004540
SUPFAM:SSF89550 eggNOG:COG1603 KO:K03539 PANTHER:PTHR13031
RefSeq:XP_713634.1 STRING:Q59VR4 GeneID:3644681 KEGG:cal:CaO19.1029
Uniprot:Q59VR4
Length = 310
Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 51/183 (27%), Positives = 90/183 (49%)
Query: 86 VPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDI 145
+P+ + ++RLT+ + ++ LN + +D++A++PLN+ + ++D+
Sbjct: 72 LPKFPKLKLFSRLTLIVNDSSKLPQLNK---LQNQFDIIAIQPLNEKVLQLSILNLDIDL 128
Query: 146 ISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLI-----------LDVQ-----LRRQ 189
ISIN A KL F LK + A E+G+ FE+ YS LI +D +++
Sbjct: 129 ISINLASKLSFYLKFKTLNNATEKGIKFEICYSQLISGNTNSGGGGYIDDSTNTNLIKKN 188
Query: 190 MISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKN-CRA 248
+N L+ R + +I+SSGA + +LR D+ L L S + +SKN C
Sbjct: 189 FFNNVLQLIRGCRSRGIIISSGAQTSLQLRNLSDILILLKTLSSS----PSDLSKNNCSK 244
Query: 249 LIS 251
I+
Sbjct: 245 FIT 247
>SGD|S000002435 [details] [associations]
symbol:REG1 "Regulatory subunit of type 1 protein phosphatase
Glc7p" species:4932 "Saccharomyces cerevisiae" [GO:0042149
"cellular response to glucose starvation" evidence=IMP] [GO:0008599
"protein phosphatase type 1 regulator activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007039 "vacuolar protein
catabolic process" evidence=IMP;IDA] [GO:0000164 "protein
phosphatase type 1 complex" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006109 "regulation of carbohydrate metabolic
process" evidence=IGI;TAS;IPI] [GO:0005977 "glycogen metabolic
process" evidence=TAS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=TAS]
SGD:S000002435 GO:GO:0005634 GO:GO:0005773 GO:GO:0006109
EMBL:BK006938 GO:GO:0005977 GO:GO:0042149 GO:GO:0000122
GO:GO:0007039 InterPro:IPR013860 Pfam:PF08550 GO:GO:0008599
EMBL:X95966 GO:GO:0000164 EMBL:Z47814 EMBL:M33703 EMBL:M90540
EMBL:Z74324 PIR:S32613 RefSeq:NP_010311.1 ProteinModelPortal:Q00816
DIP:DIP-2513N IntAct:Q00816 MINT:MINT-648820 STRING:Q00816
PaxDb:Q00816 PeptideAtlas:Q00816 EnsemblFungi:YDR028C GeneID:851592
KEGG:sce:YDR028C CYGD:YDR028c eggNOG:NOG70919 OMA:WAKARNN
OrthoDB:EOG4NPBC1 NextBio:969075 Genevestigator:Q00816
GermOnline:YDR028C Uniprot:Q00816
Length = 1014
Score = 130 (50.8 bits), Expect = 0.00016, P = 0.00016
Identities = 84/396 (21%), Positives = 165/396 (41%)
Query: 351 DSGKSNLFVAGA----NEKSVA-SN-GVSENRRRLDILHETDQNSLHNAPLNNQ--SSSC 402
D G+ +L + A N +S A SN + EN D DQN N+P NN+ SS+
Sbjct: 376 DKGEEDLHLKSALHVQNNRSTAQSNKSILENSTN-DRKANLDQNL--NSPDNNRFPSSTS 432
Query: 403 ENNRESGSPSAFPETII--NTEDIESQPTI---IEEDDVAEKSFT-------AKETERDD 450
+NR++ + S +I+ N + ++PT I +D E+ +++ E DD
Sbjct: 433 SSNRDNENNSMGLSSILTSNPSEKSNKPTKNRHIHFNDRVEQCMALRYPASQSEDDESDD 492
Query: 451 QNTKH-GISSHAVDLVLSKEIVKCPALTGE-IELGAACNVDNKLEGDTLPDTFHSSACHN 508
+N ++ ++++A ++ A+ + I + +A NK D + SS+ H+
Sbjct: 493 ENKQYVDVNNNANVTTINNNRTPLLAIQHKSIPINSATEHLNKNTSDDDTSSQSSSSSHS 552
Query: 509 EESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDV 568
++ E G+ +++ + G+ I D N S+ + R H R ++ +
Sbjct: 553 DDE---EHGGLYINARFSRRSDSGVHSPITD---------NSSVASSTTSRAHVRPIIKL 600
Query: 569 VSGQNLLQGSHDEMDNKNGTSFAN---HETEVTM--EELRDGERLREPGDGRLL----AD 619
+ L GS +E DN + N H + + + D + L D
Sbjct: 601 LPDTTLNYGSDEESDNGEFNGYGNAVSHNVNTSRGYDYIYDYNSVYTGDTSSFLPVDSCD 660
Query: 620 KISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLIT---GQNLFLDSS 676
+ + E D + +N+E + K+K+ Q + T G ++ L
Sbjct: 661 IVDVPEGMDLQTAIADDNASNYEF-NNAVESKEKHVPQLHKASANNTTRQHGSHMLLYDD 719
Query: 677 KDFSVKENSSDANQEGLDDAKMEEQIHGEADSETDR 712
++S +SSD+ Q+ ++D++ E + + D+
Sbjct: 720 DNYS---SSSDSEQQFIEDSQYNSSDDEEEEDDDDQ 752
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 733 703 0.00082 121 3 11 23 0.45 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 615 (65 KB)
Total size of DFA: 347 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.20u 0.12s 73.32t Elapsed: 00:00:27
Total cpu time: 73.21u 0.12s 73.33t Elapsed: 00:00:27
Start: Tue May 21 13:01:09 2013 End: Tue May 21 13:01:36 2013