BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004730
         (733 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2A57|A Chain A, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A57|B Chain B, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A57|C Chain C, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A57|D Chain D, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A57|E Chain E, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           6- Carboxyethyl-7-oxo-8-ribityllumazine
 pdb|2A58|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A58|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A58|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A58|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A58|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound
           Riboflavin
 pdb|2A59|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
 pdb|2A59|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
 pdb|2A59|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
 pdb|2A59|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
 pdb|2A59|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
           Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
           5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
          Length = 159

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 121 YDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPM-IKAAIERGVY 172
           Y+L A+ PL + A +   EK +V + +I+  E +P   +LP  I+A+I R  Y
Sbjct: 27  YNLQAIEPLVKGAVETMIEKHDVKLENIDI-ESVPGSWELPQGIRASIARNTY 78


>pdb|1V77|A Chain A, Crystal Structure Of The Ph1877 Protein
 pdb|2CZV|A Chain A, Crystal Structure Of Archeal Rnase P Protein Ph1481p In
           Complex With Ph1877p
 pdb|2CZV|B Chain B, Crystal Structure Of Archeal Rnase P Protein Ph1481p In
           Complex With Ph1877p
          Length = 212

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 162 MIKAAIERGVYFE-LTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRG 220
           M+K  +  G     L YS+      L R M+   KL+  +   +   L+S A    ++R 
Sbjct: 120 MVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRR--FLTSSAQEKWDVRY 177

Query: 221 PYDVANLSSLLGISMERAKAAVS 243
           P D+ +L  ++G+ + +AKA++S
Sbjct: 178 PRDLISLGVVIGMEIPQAKASIS 200


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,159,031
Number of Sequences: 62578
Number of extensions: 801614
Number of successful extensions: 1329
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1327
Number of HSP's gapped (non-prelim): 8
length of query: 733
length of database: 14,973,337
effective HSP length: 106
effective length of query: 627
effective length of database: 8,340,069
effective search space: 5229223263
effective search space used: 5229223263
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)