BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004730
(733 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZ21|RPP30_BOVIN Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1
Length = 268
Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 102/170 (60%), Gaps = 1/170 (0%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ + C VL + + ++ YD+VAV P + F AC +VD++ I
Sbjct: 70 PIKILTRLTIIVSDPSHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVCITV 129
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P I AI+RGV FEL YS I D +RR ISNA L+ +GKN+I+SS
Sbjct: 130 TEKLPFYFKRPPINVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISS 189
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHF 259
A E+RGPYDVANL L G+S AKAAVS NCRA L+ RK F
Sbjct: 190 AAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAF 239
>sp|O88796|RPP30_MOUSE Ribonuclease P protein subunit p30 OS=Mus musculus GN=Rpp30 PE=2
SV=1
Length = 268
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 100/170 (58%), Gaps = 1/170 (0%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ A C VL + + ++ YD+VAV P + F AC +VD++ I
Sbjct: 70 PIKILTRLTIIVTDPAHCNVLRATSSRVRLYDIVAVFPKTEKLFHVACTHLDVDLVCITV 129
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P + AIERG+ FEL Y I D +RR ISNA L+ +GKN+ILSS
Sbjct: 130 TEKLPFYFKRPPVNVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSS 189
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRAL-ISNALRKKHF 259
A E+RGPYDVANL L G+S KAAVS NCRA+ + RK F
Sbjct: 190 AAERPLEIRGPYDVANLGLLFGLSENDGKAAVSTNCRAVFLHGETRKTAF 239
>sp|P78346|RPP30_HUMAN Ribonuclease P protein subunit p30 OS=Homo sapiens GN=RPP30 PE=1
SV=1
Length = 268
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 101/170 (59%), Gaps = 1/170 (0%)
Query: 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINF 150
P + TRLT+ + C VL + + + YD+VAV P + F AC +VD++ I
Sbjct: 70 PIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITV 129
Query: 151 AEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSS 210
EKLPF K P I AI+RG+ FEL YS I D +RR IS+A L+ +GKN+I+SS
Sbjct: 130 TEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISS 189
Query: 211 GASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCR-ALISNALRKKHF 259
A E+RGPYDVANL L G+S AKAAVS NCR AL+ RK F
Sbjct: 190 AAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAF 239
>sp|Q3ZE13|RPP30_DICDI Ribonuclease P protein subunit drpp30 OS=Dictyostelium discoideum
GN=drpp30 PE=2 SV=1
Length = 366
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 45/271 (16%)
Query: 1 MGFFDLNIPYVESPPSNATTHKNARVKIVIKAM-----ELGYTGVAYNRTMKGVMSDRDR 55
M ++DLNI P IK+M + GY VA T++G + +D
Sbjct: 1 MVYYDLNIDSSLPEPK-------------IKSMLSLHTKYGYDSVAITHTVEGKIGYKDV 47
Query: 56 CSIPLL---------TLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIA 106
C I + T + +K+ S +QYTRL V T+A
Sbjct: 48 CKIKKIQIEDDSEKSTSSGWMKMGDSNKT----------------IKQYTRLQVICKTMA 91
Query: 107 QCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAA 166
+ Q++ + NPV+++YD+++V P + S F+ AC E+DII+I+ K F +K ++
Sbjct: 92 EFQMITANNPVVQSYDIISVVPYDVSVFNAACNSNEIDIITIDTFSK--FIIKPERVRQC 149
Query: 167 IERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVAN 226
I +G++ E+ Y +L R A LV + GKN+ILSS S T LR PYD++N
Sbjct: 150 IAKGIFIEILYGNLFGIDADRIAFFQIASSLVRSSFGKNIILSSSGKSSTTLRSPYDLSN 209
Query: 227 LSSLLGISMERAKAAVSKNCRALISNALRKK 257
L L G++ ++AKAAVSK+ + +A+ ++
Sbjct: 210 LGHLFGLTFDQAKAAVSKHPHTAVLHAITRR 240
>sp|P87120|RNP3_SCHPO Probable ribonuclease P protein subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC3A12.04c PE=3
SV=2
Length = 235
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 133/262 (50%), Gaps = 32/262 (12%)
Query: 3 FFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLT 62
F DLN+ + P+ N VK V LGYT +A N G + + + I
Sbjct: 2 FIDLNVVW----PTLGVKDLNL-VKTVKTLERLGYTAIALNYQYDGKLQNVIKNPI---- 52
Query: 63 LAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYD 122
+ +L P + Y+R+T+ +++ Q +VL++ V K +D
Sbjct: 53 ---VKELYPEQKIKI-----------------YSRITLTIESMPQNKVLSN---VTKEFD 89
Query: 123 LVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLIL 182
++A+RP+ C E DI+SI+F ++LPF LK + A+ R + E++YS +
Sbjct: 90 ILAIRPIGDRLLQQTCSDLEFDILSIDFTQRLPFYLKHTFMGLAVSRDIGIEISYSSGLR 149
Query: 183 DVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAV 242
DV RR +I+NA LV TRG+ +I++S + E R +DV NL++ + ++A+ +V
Sbjct: 150 DVSNRRNLITNATSLVRATRGRGIIVTSETRTPLECRAGFDVINLATFWDLKQDQARKSV 209
Query: 243 SKNCRALISNALRKKHFHRETI 264
++CR+++ +A ++ +R +
Sbjct: 210 GESCRSVLLHAETRRDTYRSIL 231
>sp|P38786|RPP1_YEAST Ribonuclease P/MRP protein subunit RPP1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPP1 PE=1 SV=1
Length = 293
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 126/264 (47%), Gaps = 20/264 (7%)
Query: 3 FFDLNIPYVESPPSNATTHK--NARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPL 60
DLN+P+ ++ ++ T + N +K + LGYT +A N T+ S++ + L
Sbjct: 2 LVDLNVPWPQNSYADKVTSQAVNNLIKTLSTLHMLGYTHIAINFTVN--HSEKFPNDVKL 59
Query: 61 LTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKT 120
L ++ R + + + Y+R+T+ D ++ Q L+ + +
Sbjct: 60 LN-------------PIDIKRRFGELMDRTGLKLYSRITLIIDDPSKGQSLSK---ISQA 103
Query: 121 YDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDL 180
+D+VA P+++ + ++D+++ + +LP LK I + + RGV E+ Y
Sbjct: 104 FDIVAALPISEKGLTLSTTNLDIDLLTFQYGSRLPTFLKHKSICSCVNRGVKLEIVYGYA 163
Query: 181 ILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA 240
+ DVQ RRQ +SN + ++ +R + +++ SGA S E R V +L LG+ +R
Sbjct: 164 LRDVQARRQFVSNVRSVIRSSRSRGIVIGSGAMSPLECRNILGVTSLIKNLGLPSDRCSK 223
Query: 241 AVSKNCRALISNALRKKHFHRETI 264
A+ ++ N + H++TI
Sbjct: 224 AMGDLASLVLLNGRLRNKSHKQTI 247
>sp|O26784|RNP3_METTH Ribonuclease P protein component 3 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rnp3 PE=1 SV=1
Length = 245
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 3/159 (1%)
Query: 113 SGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVY 172
S N K D++ V N ACE VD++S + + + + + A V
Sbjct: 85 SVNKFRKKADVIYVSGGNLKVNRAACESRRVDVLSAPYTSRRDPGINHVLAREAARNNVA 144
Query: 173 FELTYSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSS 229
EL +D+I +++R +++ + ++ R G L+L+S ASS+ +LR P D+ NL+
Sbjct: 145 VELPLADVIGSWLKVRARVLEQFREILKLHRKFGFPLLLTSRASSIYDLRTPGDIMNLAE 204
Query: 230 LLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEP 268
G+ A+ +++ +++ ++ + E +R+ P
Sbjct: 205 CFGMESSEAEESLTSTPASILEDSGNRHLLIAEGVRLLP 243
>sp|A7H7J7|SYP_ANADF Proline--tRNA ligase OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=proS PE=3 SV=1
Length = 575
Score = 39.7 bits (91), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 29 VIKAMELGYT---GVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLG 85
V KA+E+G+ G Y+ +MK + D D ++P++ + + + ++A++ H D LG
Sbjct: 408 VFKALEVGHIFKLGTKYSESMKATVLDADGKAVPIVMGSYGIGVERIMAAAIELHHDELG 467
Query: 86 V---PRCSPFRQYTRLTV 100
+ P +PF Q T LT+
Sbjct: 468 IRWPPAIAPF-QATVLTL 484
>sp|Q469M8|RNP3_METBF Ribonuclease P protein component 3 OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rnp3 PE=3 SV=1
Length = 239
Score = 37.0 bits (84), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 119 KTYDLVAVRPLNQSAFDHACEKAEVDIIS-INFAEKLPFRLKLPMIKAAIERGVYFELTY 177
K+ D++ V +++ A E VDI++ FA+ L + K+A E V L
Sbjct: 83 KSVDVLIVHGGSENVNRAALENPRVDILNHPAFAKS--SGLNQVLAKSAAENDVAISLII 140
Query: 178 SDLILDVQLRR-QMISNAKLLVDWTRGKN--LILSSGASSVTELRGPYDVANLSSLLGIS 234
L+ RR +++SN + +D R + L+LSSGA S +LR P + L+ + G+
Sbjct: 141 RPLLHSRGPRRVRLLSNLRANLDLARKYDVSLVLSSGAMSCFDLRSPMETLALAEVCGLE 200
Query: 235 MERAKAAVSKNCRALISNALRKKHFHRETIRV 266
+ A A++ +IS RE I V
Sbjct: 201 EDEALEAITVVPERIISRNRPGPGHVREGIEV 232
>sp|Q8PTU3|RNP3_METMA Ribonuclease P protein component 3 OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rnp3 PE=3 SV=1
Length = 239
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 162 MIKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTRGKN--LILSSGASSVTEL 218
+ KAA E GV +T L+ RR +M+S+ K ++ R + L+L S A S +L
Sbjct: 125 LAKAAAENGVAIGITLRPLLHSRGSRRIRMLSDLKANLELARKYDVPLVLCSDAMSCYDL 184
Query: 219 RGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRV 266
R P + + + G+ + A A+S + +I + RE I V
Sbjct: 185 RSPMETLAFAEVCGLEEDEALDALSTVPKKIIKKNRPGPGYVREGIEV 232
>sp|Q63118|CALRL_RAT Calcitonin gene-related peptide type 1 receptor OS=Rattus
norvegicus GN=Calcrl PE=2 SV=1
Length = 464
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 262 ETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQL-DDMAESFTASTKVSK 315
+ I +PI GE W G WL W+ +++G +Q D + F S KV+K
Sbjct: 50 QKIMQDPIQQGEGLYCNRTWDG-WLCWNDVAAGTESMQYCPDYFQDFDPSEKVTK 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,238,900
Number of Sequences: 539616
Number of extensions: 11025303
Number of successful extensions: 26217
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 26015
Number of HSP's gapped (non-prelim): 223
length of query: 733
length of database: 191,569,459
effective HSP length: 125
effective length of query: 608
effective length of database: 124,117,459
effective search space: 75463415072
effective search space used: 75463415072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)