Query 004730
Match_columns 733
No_of_seqs 164 out of 323
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 11:56:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2363 Protein subunit of nuc 100.0 3.4E-39 7.4E-44 327.1 15.2 231 2-266 1-231 (247)
2 PF01876 RNase_P_p30: RNase P 100.0 2.8E-38 6.1E-43 296.0 11.1 149 95-245 1-150 (150)
3 COG1603 RPP1 RNase P/RNase MRP 100.0 1.9E-35 4.1E-40 297.5 20.2 220 2-264 1-224 (229)
4 PRK00912 ribonuclease P protei 100.0 2E-31 4.3E-36 265.3 24.0 228 1-267 1-231 (237)
5 PRK03892 ribonuclease P protei 99.9 3.1E-25 6.8E-30 221.3 16.1 151 97-252 62-215 (216)
6 PRK06361 hypothetical protein; 98.9 6.2E-08 1.3E-12 95.1 15.2 188 26-252 13-210 (212)
7 PRK09248 putative hydrolase; V 98.2 1.8E-05 4E-10 80.0 13.7 213 2-251 3-230 (246)
8 PRK07328 histidinol-phosphatas 97.2 0.0053 1.2E-07 63.3 13.6 196 1-219 1-237 (269)
9 PRK07945 hypothetical protein; 97.2 0.0044 9.5E-08 66.7 12.7 204 3-241 97-322 (335)
10 COG1387 HIS2 Histidinol phosph 97.2 0.0072 1.6E-07 62.1 13.5 191 26-247 19-230 (237)
11 PRK08609 hypothetical protein; 97.1 0.0059 1.3E-07 70.1 13.3 206 3-242 335-557 (570)
12 PRK08392 hypothetical protein; 96.9 0.054 1.2E-06 54.3 16.6 176 26-238 17-209 (215)
13 PRK08123 histidinol-phosphatas 95.1 0.33 7.1E-06 50.5 12.8 56 160-218 200-257 (270)
14 PRK05588 histidinol-phosphatas 92.1 0.63 1.4E-05 47.7 8.4 135 91-234 64-242 (255)
15 TIGR00010 hydrolase, TatD fami 91.2 5.1 0.00011 39.7 13.4 107 131-250 133-250 (252)
16 PRK07329 hypothetical protein; 88.4 1.5 3.3E-05 45.2 7.5 97 133-234 129-241 (246)
17 PRK06740 histidinol-phosphatas 87.8 0.76 1.6E-05 49.8 5.1 125 91-220 139-301 (331)
18 cd01310 TatD_DNAse TatD like p 86.6 23 0.0005 35.0 14.2 108 130-250 132-250 (251)
19 PRK09875 putative hydrolase; P 86.1 7.2 0.00016 42.0 11.1 90 158-250 191-291 (292)
20 cd00530 PTE Phosphotriesterase 82.5 7.9 0.00017 39.9 9.3 88 159-249 190-292 (293)
21 COG3964 Predicted amidohydrola 80.5 10 0.00022 42.2 9.5 120 124-253 188-320 (386)
22 cd01301 rDP_like renal dipepti 61.3 1.7E+02 0.0036 32.0 13.3 125 123-247 169-307 (309)
23 PRK10812 putative DNAse; Provi 60.1 70 0.0015 33.8 10.1 86 159-251 160-255 (265)
24 TIGR01856 hisJ_fam histidinol 53.4 16 0.00034 37.8 4.0 54 160-218 188-244 (253)
25 cd01295 AdeC Adenine deaminase 53.2 96 0.0021 34.5 10.2 85 156-250 162-252 (422)
26 PF02126 PTE: Phosphotriestera 51.7 38 0.00083 36.9 6.7 90 158-250 195-307 (308)
27 PTZ00124 adenosine deaminase; 49.4 1.2E+02 0.0025 33.9 10.1 82 159-242 259-340 (362)
28 PF13147 Amidohydro_4: Amidohy 46.2 45 0.00098 32.4 5.7 90 163-252 185-288 (304)
29 COG1228 HutI Imidazolonepropio 45.7 73 0.0016 36.0 7.9 92 156-253 261-356 (406)
30 PRK10657 isoaspartyl dipeptida 44.5 1.2E+02 0.0026 32.7 9.0 89 162-251 235-341 (388)
31 cd01309 Met_dep_hydrolase_C Me 43.7 3.8E+02 0.0083 29.2 12.8 122 120-251 191-318 (359)
32 PF01244 Peptidase_M19: Membra 42.6 2.6E+02 0.0056 30.6 11.2 129 123-251 175-319 (320)
33 TIGR01178 ade adenine deaminas 41.9 1.1E+02 0.0025 35.8 8.9 85 160-251 207-294 (552)
34 cd01299 Met_dep_hydrolase_A Me 41.2 4.5E+02 0.0098 27.7 13.9 118 123-250 175-311 (342)
35 cd01320 ADA Adenosine deaminas 36.9 2.2E+02 0.0048 30.1 9.5 82 161-246 225-307 (325)
36 cd01292 metallo-dependent_hydr 35.0 1.1E+02 0.0024 29.5 6.4 86 159-247 185-273 (275)
37 cd00443 ADA_AMPD Adenosine/AMP 33.3 1.5E+02 0.0031 31.8 7.5 81 160-242 204-284 (305)
38 cd01321 ADGF Adenosine deamina 31.0 1.7E+02 0.0037 32.2 7.7 81 160-243 236-321 (345)
39 PF01026 TatD_DNase: TatD rela 30.7 4.5E+02 0.0098 27.2 10.3 85 159-250 160-254 (255)
40 cd01306 PhnM PhnM is believed 30.4 1.7E+02 0.0037 32.2 7.6 88 157-251 204-291 (325)
41 PF03102 NeuB: NeuB family; I 28.3 70 0.0015 33.9 4.1 75 132-225 59-135 (241)
42 cd00465 URO-D_CIMS_like The UR 25.0 7E+02 0.015 26.0 10.7 97 123-227 203-300 (306)
43 PRK06826 dnaE DNA polymerase I 24.5 72 0.0016 40.8 3.9 38 1-42 3-40 (1151)
44 TIGR01975 isoAsp_dipep isoaspa 24.0 3.8E+02 0.0083 30.1 9.0 126 119-251 188-342 (389)
45 TIGR01430 aden_deam adenosine 23.1 2.3E+02 0.0049 30.2 6.8 84 160-246 223-306 (324)
46 cd01298 ATZ_TRZ_like TRZ/ATZ f 22.1 3.8E+02 0.0083 28.6 8.2 88 158-251 254-350 (411)
47 TIGR03569 NeuB_NnaB N-acetylne 21.6 1.4E+02 0.003 33.2 4.9 19 26-44 19-37 (329)
48 PRK00115 hemE uroporphyrinogen 21.4 5.2E+02 0.011 28.1 9.2 89 121-217 240-328 (346)
49 PRK12394 putative metallo-depe 20.7 5.9E+02 0.013 27.8 9.4 82 160-250 232-318 (379)
50 PRK11449 putative deoxyribonuc 20.7 6.3E+02 0.014 26.7 9.3 85 159-250 162-256 (258)
51 PRK09237 dihydroorotase; Provi 20.3 5.7E+02 0.012 27.8 9.2 83 160-251 227-314 (380)
No 1
>KOG2363 consensus Protein subunit of nuclear ribonuclease P (RNase P) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-39 Score=327.05 Aligned_cols=231 Identities=35% Similarity=0.538 Sum_probs=199.5
Q ss_pred ceeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEEeeeecCccCCCCCCCCChhhHHHhhhcCCCccccccccc
Q 004730 2 GFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHR 81 (733)
Q Consensus 2 GFYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAIN~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~~ 81 (733)
+|||+||+|+.++. ..|.+++.++.++||++||||++++.... ..++. | +++...
T Consensus 1 m~~D~nv~~~~~~~-------~lr~~sv~~l~~~gyt~iaIn~~~~~~e~--~~~~~-p--i~~~~~------------- 55 (247)
T KOG2363|consen 1 MFIDLNVSSSYDGS-------ALRLASVDTLEELGYTGIAINTVVDPSEN--EVIPN-P--IKEELD------------- 55 (247)
T ss_pred CeEEeccCCCcchH-------hhhhhhhhHHHhcccceEEEEEEecHhHc--ccccC-c--hHHHHH-------------
Confidence 69999999998742 22336788999999999999999886432 22222 2 222111
Q ss_pred ccCCCCCCCCceeEEEEEEEeCChhhhhhccCCCCCCccccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHH
Q 004730 82 DLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLP 161 (733)
Q Consensus 82 dllgv~~ssgLrILsRLTIvvsD~sql~~L~s~~k~lkkYDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhk 161 (733)
. -..+++|+||||+++++.+.+... +...+|||+|++|.+++.|..+|..+++|+|++||+.++||.+||+
T Consensus 56 -~-----l~~~kiy~riti~~~~~~~~~~~s---~~~~k~di~a~~p~~~~~~s~~~t~l~~dvitfn~~~~~~~~~k~~ 126 (247)
T KOG2363|consen 56 -L-----LRDKKIYSRITILVSDMPATRSTS---KRATKFDILAVRPKNIEGLSGACTMLDPDVITFNYTERLPFLFKRK 126 (247)
T ss_pred -H-----hhcccceeeEEEEEEcCCccccch---hhccceeeeeecccChhhcccccccCCcceEEEechhccCcccCCc
Confidence 1 123789999999999999886543 4568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHHHH
Q 004730 162 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAA 241 (733)
Q Consensus 162 laraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK~A 241 (733)
.+..|+.||++|||.|++.++++..|++||+||+.|++.++|+|||+||||..++++|+|+||+||+.+|||++++|+++
T Consensus 127 ~~~~av~r~i~~ei~y~~g~~d~~~r~~~isna~~L~~~~~~~nvv~sSgA~~~~e~r~~~dV~~l~~~lgl~~dq~k~~ 206 (247)
T KOG2363|consen 127 EIMTAVKRGIFLEIPYSSGLYDSDDRRMWISNARRLLRITRGKNVVFSSGAMRPTEERGPYDVANLLIILGLSSDQAKAA 206 (247)
T ss_pred ceeeeecCCceeEeeecccccCCcchhhhhhhHHHHHHhcCCceeEeecccccchhhcChhhhhhhHHHcCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhhhcccceeeeEEE
Q 004730 242 VSKNCRALISNALRKKHFHRETIRV 266 (733)
Q Consensus 242 LS~nPrsLL~~AlRRKs~~KgvV~V 266 (733)
|+.+||.++.++.+|++.++..+..
T Consensus 207 l~~s~r~~~l~a~~R~~~~~s~~~~ 231 (247)
T KOG2363|consen 207 LSESCRLLLLCAETRRSKAASISES 231 (247)
T ss_pred HhhhhhhhhhHHHHhhccceeEeec
Confidence 9999999999998787755555444
No 2
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=100.00 E-value=2.8e-38 Score=296.04 Aligned_cols=149 Identities=49% Similarity=0.721 Sum_probs=115.8
Q ss_pred EEEEEEEeCChhhhhhccCCCCCCccccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEE
Q 004730 95 YTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFE 174 (733)
Q Consensus 95 LsRLTIvvsD~sql~~L~s~~k~lkkYDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhklaraAIeRGV~FE 174 (733)
|+|+||+++|+....... .+++++||||||+|+++++|++||++.+||||++|+..++||++||+++++|++|||+||
T Consensus 1 ~~R~ti~~~d~~~~~~~~--~~~~~~~divav~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~E 78 (150)
T PF01876_consen 1 YSRLTIVASDPSSLRRSL--SKFRKKYDIVAVRPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFE 78 (150)
T ss_dssp HSSEEEEEES--HHHHHH--HHTTT--SEEEEE-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEE
T ss_pred CccEEEEEcCHHHHHHHh--hcccCCceEEEEEcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEE
Confidence 579999999996332221 257889999999999999999999999999999999989999999999999999999999
Q ss_pred EEecccc-cChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Q 004730 175 LTYSDLI-LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKN 245 (733)
Q Consensus 175 I~YSplI-~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK~ALS~n 245 (733)
|+|+|++ .++..|+++|+|++.|+++++++||||||||++++|||+|+||+||+.+|||++++|++|+++|
T Consensus 79 I~~~~~l~~~~~~r~~~~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~~a~~avs~n 150 (150)
T PF01876_consen 79 ISYSPLLRSDGSNRRNFISNARRLIRLTKKKNIIISSGASSPLELRSPRDVINLLALLGLSEEEAKKAVSTN 150 (150)
T ss_dssp EESHHHHHS-HHHHHHHHHHHHHHHHHHHH--EEEE---SSGGG---HHHHHHHHHHTT--HHHHHHTTTH-
T ss_pred EEehHhhccCcHHHHHHHHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 9999999 8899999999999999999999999999999999999999999999999999999999999876
No 3
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-35 Score=297.53 Aligned_cols=220 Identities=26% Similarity=0.337 Sum_probs=188.3
Q ss_pred ceeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEEeeeecCccCCCCCCCCChhhHHHhhhcCCCccccccccc
Q 004730 2 GFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHR 81 (733)
Q Consensus 2 GFYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAIN~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~~ 81 (733)
+|||+|++|++. ++.++.+|||+.+++|.+... ....+.+ |+ .+ .
T Consensus 1 ~~~d~~v~~~~~--------------~~~~l~~l~~~~~~l~y~~~~-~~~~D~~---~l-----~e------------~ 45 (229)
T COG1603 1 KFIDFNVRWPEL--------------TALELERLGYTSGVLNYQKDA-LFSVDKN---PL-----RE------------E 45 (229)
T ss_pred CeeeccCCCccH--------------HHHHHHHhcceeeEEEEeccc-cccchhH---HH-----HH------------h
Confidence 699999999953 346789999999999998774 1111111 10 00 0
Q ss_pred ccCCCCCCCCceeEEEEEEEeCChhhhhhccCCCCCCccccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHH
Q 004730 82 DLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLP 161 (733)
Q Consensus 82 dllgv~~ssgLrILsRLTIvvsD~sql~~L~s~~k~lkkYDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhk 161 (733)
...++++|+|++++.+++++++.+.+ ++.++.|||+|+|++++++++||++.+||||++|+..+.|++++|.
T Consensus 46 ------~~~~~~i~~~i~l~~~s~~~~r~~~~--kfr~~~dlI~V~~~~lkv~R~Av~~~rVDil~~p~~~r~~~gldh~ 117 (229)
T COG1603 46 ------IYGKVKIYRGITLNAESPSQLRRLVK--KFRSKVDLIAVEPGSLKVNRAAVENKRVDILSHPETGRKDPGLDHV 117 (229)
T ss_pred ------hhcccceeeeEEEecCChHHHHHHHH--hhhcceeEEEEccCcHHHHHHHHhccCccEEEcccccCCCccccHH
Confidence 01568999999999999999998763 6777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCeEEEEEecccccC-hHHHHHHHHHHHHHHhhcC--CCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHH
Q 004730 162 MIKAAIERGVYFELTYSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERA 238 (733)
Q Consensus 162 laraAIeRGV~FEI~YSplI~D-s~sRrn~IsNar~LIRaTK--GKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeA 238 (733)
.++.|+++||++||+|++++++ +..|.+++.+++.++++++ ++|+||||+|++++|||+|+|+++|+.+|||+.++|
T Consensus 118 ~a~laa~~~valeisl~~ll~~~g~~Ra~~l~~lr~~lrl~rk~~v~ivvtS~A~s~~elrsP~dv~sl~~~lG~e~~ea 197 (229)
T COG1603 118 LARLAAEKGVALEISLRPLLRSSGYRRARLLSFLRSLLRLARKYDVPIVVTSDAESPLELRSPRDVISLAKVLGLEDDEA 197 (229)
T ss_pred HHHHHHhcCceEEEehHHhhccchhHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhhcChhhHHHHHHHhCCCHHHH
Confidence 9999999999999999999998 5566699999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhhh-cccceeeeE
Q 004730 239 KAAVSKNCRALISNALR-KKHFHRETI 264 (733)
Q Consensus 239 K~ALS~nPrsLL~~AlR-RKs~~KgvV 264 (733)
+++++.+|+.++.++.+ +..+...+|
T Consensus 198 ~~~~~~~p~~iL~~~~~~~~~~i~~gv 224 (229)
T COG1603 198 KKSLSEYPRLILRNRNRIRDGFIVPGV 224 (229)
T ss_pred HHHHHHhHHHHHHHhhhcCCceEEecc
Confidence 99999999999996533 444444443
No 4
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=100.00 E-value=2e-31 Score=265.26 Aligned_cols=228 Identities=24% Similarity=0.354 Sum_probs=192.2
Q ss_pred CceeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEEeeeecCccCCCCCCCCChhhHHHhhhcCCCcccccccc
Q 004730 1 MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFH 80 (733)
Q Consensus 1 MGFYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAIN~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~ 80 (733)
|+||||++|+.+++..+ ..+++.+|.++||++|||..-.+ . +|... ...
T Consensus 1 ~m~~DlHvHt~~d~~~~-------~~e~i~~A~~~Gl~~i~itdH~~-~--------~~~~~--~~~------------- 49 (237)
T PRK00912 1 MKFYDLNVHAVPDGYDT-------VLRLISEASHLGYSGIALSNHSD-K--------YPESK--PEL------------- 49 (237)
T ss_pred CCceEeccCCCCCCcch-------HHHHHHHHHHCCCCEEEEecCcc-c--------ccchh--HHH-------------
Confidence 99999999996443221 24689999999999999953211 1 11100 000
Q ss_pred cccCCCCCCCCceeEEEEEEEeCChhhhhhccCCCCCCccccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCH
Q 004730 81 RDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKL 160 (733)
Q Consensus 81 ~dllgv~~ssgLrILsRLTIvvsD~sql~~L~s~~k~lkkYDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKh 160 (733)
. ...+|+|+.|+||...++..+..+.. +..+.||+|+|+|+++++++.||++..||||+++...+.++.+++
T Consensus 50 ~------~~~~i~Il~GiEi~~~~~~~~~~~~~--~~~~~~d~v~v~~~~~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~ 121 (237)
T PRK00912 50 E------DLLGFEIFRGVEIVASNPSKLRGLVG--KFRKKVDVLAVHGGDEKVNRAACENPRVDILSHPYTKRKDSGINH 121 (237)
T ss_pred H------HhcCCcEEeeEEEecCCHHHHHHHHH--hccCcccEEEEeCCCHHHHHHHHccCCCcEEeCccccCCCCCcCH
Confidence 0 01268999999999888887765542 356789999999999999999999999999999998788889999
Q ss_pred HHHHHHHHcCeEEEEEecccccCh-HHHHHHHHHHHHHHhhcC--CCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHH
Q 004730 161 PMIKAAIERGVYFELTYSDLILDV-QLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMER 237 (733)
Q Consensus 161 klaraAIeRGV~FEI~YSplI~Ds-~sRrn~IsNar~LIRaTK--GKnIIISSGA~S~lELRSP~DVINLl~LfGLseee 237 (733)
..+++|.++|++|||+|++++++. ..|+++++|++.++++++ |.|+||||+|.++++||+|+++++|+..+||+.++
T Consensus 122 ~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~~l~~~~~~~~l~~~~Gl~~~~ 201 (237)
T PRK00912 122 VLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYDLRSPREMIALAELFGMEEDE 201 (237)
T ss_pred HHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcccccCCHHHHHHHHHHcCCCHHH
Confidence 999999999999999999999863 468899999999999987 78899999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhhhcccceeeeEEEe
Q 004730 238 AKAAVSKNCRALISNALRKKHFHRETIRVE 267 (733)
Q Consensus 238 AK~ALS~nPrsLL~~AlRRKs~~KgvV~V~ 267 (733)
++.+++.+|+.++.+..+|+.++..+|+|.
T Consensus 202 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 231 (237)
T PRK00912 202 ALKALSYYPESIIKKNRNRKNYVIEGVEIV 231 (237)
T ss_pred HHHHHHHhHHHHHHhhccCCCcccccEEEc
Confidence 999999999999999988888999999983
No 5
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=99.93 E-value=3.1e-25 Score=221.26 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=142.3
Q ss_pred EEEEEeCChhhhhhccCCCCCCccccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEE
Q 004730 97 RLTVFADTIAQCQVLNSGNPVLKTYDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELT 176 (733)
Q Consensus 97 RLTIvvsD~sql~~L~s~~k~lkkYDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~ 176 (733)
.++|+.+||++++.+.+ ++ +.+||+|++++.+++|+||++ +||||+.|+..|...+|+|.++++|.+|||++||+
T Consensus 62 gv~i~~~np~~l~~~V~--k~--~~~vv~V~GGd~~vNR~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~ 136 (216)
T PRK03892 62 AILLVTPKPSLIREVKQ--RF--LNYLIYVQGGDLRVNRYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFS 136 (216)
T ss_pred eEEEecCCHHHHHHHHH--hc--cceEEEEECCcHHHHHHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEe
Confidence 89999999999987653 45 799999999999999999998 99999999988776799999999999999999999
Q ss_pred ecccccC-hHHHHHHHHHHHHHHhhcC--CCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhHHHHHHh
Q 004730 177 YSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISN 252 (733)
Q Consensus 177 YSplI~D-s~sRrn~IsNar~LIRaTK--GKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK~ALS~nPrsLL~~ 252 (733)
++|+|+. +..|+++|++++.++.+.+ +.|+||||+|+++++||+|+|++.|+.+|||+.++|+++|+.+|+.++.+
T Consensus 137 L~plL~~~G~~Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iGme~~ea~~~Ls~~p~~i~~~ 215 (216)
T PRK03892 137 LSPLLRANPYERANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIGMEIPQAKASLSFYPRIILKR 215 (216)
T ss_pred cHHHHhhCchhHHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhCCCHHHHHHHHHHhHHHHhhc
Confidence 9999985 8999999999999999986 89999999999999999999999999999999999999999999998864
No 6
>PRK06361 hypothetical protein; Provisional
Probab=98.86 E-value=6.2e-08 Score=95.13 Aligned_cols=188 Identities=16% Similarity=0.140 Sum_probs=126.3
Q ss_pred HHHHHHHHHcCCcEEEE-eeeecCccCCCCCCCCChhhHHHhhhcCCCcccccccccccCCCCCCCCceeEEEEEEEeCC
Q 004730 26 VKIVIKAMELGYTGVAY-NRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADT 104 (733)
Q Consensus 26 lkLL~~A~eLGYsgVAI-N~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~~dllgv~~ssgLrILsRLTIvvsD 104 (733)
.+++.+|.+.||.+||| .|. +- . ..+.. ...... . ........+++++.++++..-+
T Consensus 13 ~e~v~~A~~~Gl~~i~iTDH~-~~--~-----~~~~~-~~~~~~---~----------~~~~~~~~~i~v~~GiE~~~~~ 70 (212)
T PRK06361 13 SELVRRARVLGYRAIAITDHA-DA--S-----NLEEI-LEKLVR---A----------AEELELYWDIEVIPGVELTHVP 70 (212)
T ss_pred HHHHHHHHHcCCCEEEEecCC-CC--c-----cHHHH-HHHHHH---H----------HHHHhhcCCCEEEEEEEEcccC
Confidence 46889999999999999 443 10 0 00000 000000 0 0000112368999999998655
Q ss_pred hhhhhhccCCCCC-CccccEEEEecCCH------HHHHHHHhcCCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEEe
Q 004730 105 IAQCQVLNSGNPV-LKTYDLVAVRPLNQ------SAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTY 177 (733)
Q Consensus 105 ~sql~~L~s~~k~-lkkYDIVAVrP~SE------kaFr~ACenldVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~Y 177 (733)
+.....+.. .+ ...||+++|+.... .....|+++..+|||+++-. +++..+++|.++|+++||+.
T Consensus 71 ~~~~~~~~~--~~~~~~~~~~svH~~~~~~~~~~~~~~~a~~~~~~dvlaHpd~------~~~~~~~~~~~~~~~lEin~ 142 (212)
T PRK06361 71 PKLIPKLAK--KARDLGAEIVVVHGETIVEPVEEGTNLAAIECEDVDILAHPGL------ITEEEAELAAENGVFLEITA 142 (212)
T ss_pred chhhchHHH--HHHHCCCEEEEECCCCcchhhhhhhHHHHHhCCCCcEecCcch------hhHHHHHHHHHcCeEEEEEC
Confidence 433332221 11 12599999985532 22355788889999997742 45788999999999999998
Q ss_pred cccccChHHHHHHHHHHHHHHhhc--CCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhHHHHHHh
Q 004730 178 SDLILDVQLRRQMISNAKLLVDWT--RGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISN 252 (733)
Q Consensus 178 SplI~Ds~sRrn~IsNar~LIRaT--KGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK~ALS~nPrsLL~~ 252 (733)
++.... ... .+++.. .|.+++++|.|.++.++++......++.-.|++.++...++..||+.+|.+
T Consensus 143 ~~~~~~--~~~-------~~l~~a~~~gi~vv~~SDaH~~~d~~~~~~~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 143 RKGHSL--TNG-------HVARIAREAGAPLVINTDTHAPSDLITYEFARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred CCCccc--chH-------HHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 543211 111 233332 278899999999999999888889999999999999999999999998854
No 7
>PRK09248 putative hydrolase; Validated
Probab=98.23 E-value=1.8e-05 Score=79.96 Aligned_cols=213 Identities=18% Similarity=0.155 Sum_probs=125.7
Q ss_pred ceeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEEeeeecCccCCCCCCCCChh-hHHHhhhcCCCcccccccc
Q 004730 2 GFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDRDRCSIPLL-TLAALLKLAPSLSASVNFH 80 (733)
Q Consensus 2 GFYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAIN~tI~g~l~ek~~~~iPPl-~lsel~kl~PslssS~~l~ 80 (733)
+++|+.+|-..... +. ....+++.+|.+.||+++||.-.... ... .+.. .......
T Consensus 3 ~~~D~H~HT~~s~~-~~----~~~~e~v~~A~~~G~~~i~iTdH~~~-~~~-----~~~~~~~~~~~~------------ 59 (246)
T PRK09248 3 YPVDTHTHTIASGH-AY----STLHENAAEAKQKGLKLFAITDHGPD-MPG-----APHYWHFGNLRV------------ 59 (246)
T ss_pred cceEeCcCCCCCCC-CC----CCHHHHHHHHHHCCCCEEEECCCCCC-cCC-----CCCHHHHHHHHH------------
Confidence 37899999554311 11 11246889999999999999422111 100 0100 0000000
Q ss_pred cccCCCCCCCCceeEEEEEEEeCCh-hhhhhccCCCCCCccccEEE--Ee-----cCCHH-HH---HHHHhcCCCceEEe
Q 004730 81 RDLLGVPRCSPFRQYTRLTVFADTI-AQCQVLNSGNPVLKTYDLVA--VR-----PLNQS-AF---DHACEKAEVDIISI 148 (733)
Q Consensus 81 ~dllgv~~ssgLrILsRLTIvvsD~-sql~~L~s~~k~lkkYDIVA--Vr-----P~SEk-aF---r~ACenldVDIISL 148 (733)
+. ....+++++.++++.+... .....+. .++..+|.+. |+ |.+.. -+ -.++++..+|||.+
T Consensus 60 --~~--~~~~~i~il~GiE~~~~~~~~~~~~~~---~~~~~~D~vi~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAH 132 (246)
T PRK09248 60 --LP--RKVDGVGILRGIEANIKNYDGEIDLPG---DMLKKLDIVIAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGH 132 (246)
T ss_pred --HH--HhhcCCeEEEEEEeccccCCCcccCCH---hHhhhCCEEEEecccCccCCcCHHHHHHHHHHHHhcCCCCEEEC
Confidence 00 0124689999999976542 2221111 3445667664 32 22321 22 22446778999998
Q ss_pred cCCCCCCCCCCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhh--cCCCcEEEccCCCCCCCCCCHHHHHH
Q 004730 149 NFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDW--TRGKNLILSSGASSVTELRGPYDVAN 226 (733)
Q Consensus 149 D~s~RLPF~LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRa--TKGKnIIISSGA~S~lELRSP~DVIN 226 (733)
+...+.+.. ....++.+.++|+.+||+.+.+..... ......+.+++. ..|.+++++|.|-++.++......+.
T Consensus 133 P~~~~~~~~-~~~~~~~~~~~g~~lEvN~~~l~~~~~---g~~~~~~~~~~~~~~~g~~~~~gSDAH~~~~vg~~~~~~~ 208 (246)
T PRK09248 133 PGNPKYPID-IEAVVKAAKEHNVALEINNSSFGHSRK---GSEDNCRAIAALCKKAGVWVALGSDAHIAFDIGNFEEALK 208 (246)
T ss_pred cCCCCCccc-HHHHHHHHHHhCCEEEEECCCCccCCC---CCcChHHHHHHHHHHcCCeEEEeCCCCChhhhccHHHHHH
Confidence 875443222 245678899999999999987742100 001111222222 23788999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHhHHHHHH
Q 004730 227 LSSLLGISMERAKAAVSKNCRALIS 251 (733)
Q Consensus 227 Ll~LfGLseeeAK~ALS~nPrsLL~ 251 (733)
++.-+|++.... +...++.|+.
T Consensus 209 ~~~~~g~~~~~~---~~~~~~~~~~ 230 (246)
T PRK09248 209 ILDEVGFPEERI---LNVSPRRLLD 230 (246)
T ss_pred HHHHcCCCHHHe---eeCCHHHHHH
Confidence 999999999864 4445555553
No 8
>PRK07328 histidinol-phosphatase; Provisional
Probab=97.24 E-value=0.0053 Score=63.31 Aligned_cols=196 Identities=17% Similarity=0.154 Sum_probs=101.3
Q ss_pred CceeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEEeeeecCccCCC----CCCCCChhhHHHhhhcCCCcccc
Q 004730 1 MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYNRTMKGVMSDR----DRCSIPLLTLAALLKLAPSLSAS 76 (733)
Q Consensus 1 MGFYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAIN~tI~g~l~ek----~~~~iPPl~lsel~kl~PslssS 76 (733)
||.+|+-+|-.-...+. ....+++++|.+.|++.+||.--.+....+. .....+.-....-..
T Consensus 1 ~m~~D~H~HT~~s~~~~-----~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~-------- 67 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAV-----GTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVS-------- 67 (269)
T ss_pred CCceeeccCCCCCCCCC-----CCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHH--------
Confidence 88899999865321111 1124688999999999999942212110000 000000000010000
Q ss_pred cccccccCCCCCCCCceeEEEEEEEeCChhh--hhhccCCCCCCccccEEEEecCC------------------HH----
Q 004730 77 VNFHRDLLGVPRCSPFRQYTRLTVFADTIAQ--CQVLNSGNPVLKTYDLVAVRPLN------------------QS---- 132 (733)
Q Consensus 77 ~~l~~dllgv~~ssgLrILsRLTIvvsD~sq--l~~L~s~~k~lkkYDIVAVrP~S------------------Ek---- 132 (733)
.+.+ + . .+..+++|+.+|++-+-.... ...+.+..+ -.|=|.+||-.. ++
T Consensus 68 -~i~~-l-~-~~y~~i~Il~GiE~~~~~~~~~~~~~~l~~~~--~D~vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (269)
T PRK07328 68 -EVER-L-R-ARFPDLYVRLGIEADYHPGTEEFLERLLEAYP--FDYVIGSVHYLGAWGFDNPDFVAEYEERDLDELYRR 141 (269)
T ss_pred -HHHH-H-H-HHcCCCeEEEEEEecccCCcHHHHHHHHHhCC--CCeEEEEEeecCCcCCCChhHHHHHhcCCHHHHHHH
Confidence 0000 0 0 011368999999998753211 111111000 134566777422 01
Q ss_pred ---HHHHHHhcCCCceEEec-CCCCCCCC----CC---HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhc
Q 004730 133 ---AFDHACEKAEVDIISIN-FAEKLPFR----LK---LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWT 201 (733)
Q Consensus 133 ---aFr~ACenldVDIISLD-~s~RLPF~----LK---hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaT 201 (733)
....|+++..+|+|.+. +-.+..+. +. ...+++|+++|+.+||+-+.+-+.... ......+++..
T Consensus 142 Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~----~yp~~~il~~~ 217 (269)
T PRK07328 142 YFALVEQAARSGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGE----IYPSPALLRAC 217 (269)
T ss_pred HHHHHHHHHHcCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCC----CCCCHHHHHHH
Confidence 13446677899999954 42221111 11 467899999999999999755332110 11122333333
Q ss_pred C--CCcEEEccCCCCCCCCC
Q 004730 202 R--GKNLILSSGASSVTELR 219 (733)
Q Consensus 202 K--GKnIIISSGA~S~lELR 219 (733)
+ |.+|+|+|.|-.+-++-
T Consensus 218 ~~~g~~itigSDAH~~~~vg 237 (269)
T PRK07328 218 RERGIPVVLGSDAHRPEEVG 237 (269)
T ss_pred HHcCCCEEEeCCCCCHHHHh
Confidence 2 77899999999887753
No 9
>PRK07945 hypothetical protein; Provisional
Probab=97.18 E-value=0.0044 Score=66.66 Aligned_cols=204 Identities=16% Similarity=0.090 Sum_probs=116.0
Q ss_pred eeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEEe-eeecCccCCCCCCCCChhhHHH-hhhcCCCcccccccc
Q 004730 3 FFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAYN-RTMKGVMSDRDRCSIPLLTLAA-LLKLAPSLSASVNFH 80 (733)
Q Consensus 3 FYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAIN-~tI~g~l~ek~~~~iPPl~lse-l~kl~PslssS~~l~ 80 (733)
.+|+.+|-...+. .....+++++|.++|++.+||. |. +. .. .....++-.+.. +..+. .+.
T Consensus 97 ~~D~H~HT~~Sdg------~~~~ee~v~~Ai~~Gl~~i~~TDH~-p~-~~--~~~~~~~~~l~~y~~~i~-------~l~ 159 (335)
T PRK07945 97 RGDLHTHSDWSDG------GSPIEEMARTAAALGHEYCALTDHS-PR-LT--VANGLSAERLRKQLDVVA-------ELN 159 (335)
T ss_pred hhhcccccCCCCC------CCCHHHHHHHHHHCCCCEEEEeCCC-CC-cc--CCCCCCHHHHHHHHHHHH-------HHH
Confidence 3577777554321 1112468899999999999994 43 21 00 000011111100 00000 000
Q ss_pred cccCCCCCCCCceeEEEEEEEeCChhhhhhccCCCCCCcccc--EEEEecC---CH----HHHHHHHhcCCCceEEecC-
Q 004730 81 RDLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLKTYD--LVAVRPL---NQ----SAFDHACEKAEVDIISINF- 150 (733)
Q Consensus 81 ~dllgv~~ssgLrILsRLTIvvsD~sql~~L~s~~k~lkkYD--IVAVrP~---SE----kaFr~ACenldVDIISLD~- 150 (733)
. +..+++|+.++++-+-....+.... .+++.|| |.+||.. +. +.+..|+++..+|||.++-
T Consensus 160 ~------ky~~I~Il~GiE~d~~~~g~~~~~~---~~l~~~D~vIgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~ 230 (335)
T PRK07945 160 E------ELAPFRILTGIEVDILDDGSLDQEP---ELLDRLDVVVASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTG 230 (335)
T ss_pred H------hcCCceEEEEeEecccCCCCcchhH---HHHHhCCEEEEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCch
Confidence 0 1234899999999875422111111 1233455 4566642 22 2334456678899999652
Q ss_pred CCC------CC-CCCC-HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcC--CCcEEEccCCCCCCCCCC
Q 004730 151 AEK------LP-FRLK-LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRG 220 (733)
Q Consensus 151 s~R------LP-F~LK-hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTK--GKnIIISSGA~S~lELRS 220 (733)
--+ .| +.+. ...+++|+++|+.+||+-++.-..+ ...+++..+ |.+|+|+|.|-.+.++-.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~~r~~P---------~~~il~~a~e~G~~vtigSDAH~p~~v~~ 301 (335)
T PRK07945 231 RLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRPERRDP---------PTRLLRLALDAGCLFSIDTDAHAPGQLDW 301 (335)
T ss_pred hhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCCCCCCC---------hHHHHHHHHHcCCeEEecCCCCChhhcch
Confidence 110 11 1111 5778999999999999987653221 223333332 778999999999999977
Q ss_pred HHHHHHHHHHhCCCHHHHHHH
Q 004730 221 PYDVANLSSLLGISMERAKAA 241 (733)
Q Consensus 221 P~DVINLl~LfGLseeeAK~A 241 (733)
-.....++.-.|++.++....
T Consensus 302 ~~~~~~~a~~~g~~~~~i~n~ 322 (335)
T PRK07945 302 LGYGCERAEEAGVPADRIVNT 322 (335)
T ss_pred HHHHHHHHHHcCCCHHHcccC
Confidence 777888888889988765443
No 10
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=97.16 E-value=0.0072 Score=62.09 Aligned_cols=191 Identities=18% Similarity=0.180 Sum_probs=119.5
Q ss_pred HHHHHHHHHcCCcEEEE-eeeecCccCCCCCCCCChhhHHHhhhcCCCcccccccccccCCCCCCCCceeEEEEEEEeCC
Q 004730 26 VKIVIKAMELGYTGVAY-NRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADT 104 (733)
Q Consensus 26 lkLL~~A~eLGYsgVAI-N~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~~dllgv~~ssgLrILsRLTIvvsD 104 (733)
.+++++|.++||..+|+ .|...... ..++-......+. -+ ...+...++||+++++..-+
T Consensus 19 ~e~~~~A~~~g~~~~~iTdH~~~~~~------~~~~~~~~~~~~~----------~~---~~~~~~~i~i~~G~E~~~~~ 79 (237)
T COG1387 19 EEMVEAAIELGLEYIAITDHAPFLRV------GLDAELLKYFIEE----------IR---ELKKEYDIKILIGIEVDILP 79 (237)
T ss_pred HHHHHHHHHcCCeEEEEecccccccc------CCCHHHHHHHHHH----------HH---HHHHhcCceEEEeEEEEecC
Confidence 45689999999999999 44422100 0000000110000 00 00122338999999999987
Q ss_pred hhhhhhccCCCCCCccccE--EEEecC-----C----HHHHHHHHhcCCCceEEecCCCCC------CCC-CCHHHHHHH
Q 004730 105 IAQCQVLNSGNPVLKTYDL--VAVRPL-----N----QSAFDHACEKAEVDIISINFAEKL------PFR-LKLPMIKAA 166 (733)
Q Consensus 105 ~sql~~L~s~~k~lkkYDI--VAVrP~-----S----EkaFr~ACenldVDIISLD~s~RL------PF~-LKhklaraA 166 (733)
...+.... .++..+|+ .+|+-. + .+.+..|+.+..||+|.++-...+ ++. .-...+++|
T Consensus 80 ~~~~d~~~---~~~~~lD~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (237)
T COG1387 80 DGSLDFLD---EILKELDYVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELA 156 (237)
T ss_pred CCCcccch---hhHhhcCEEEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHH
Confidence 76433222 34444554 556552 1 245566677899999997765322 111 124778899
Q ss_pred HHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcC--CCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 004730 167 IERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSK 244 (733)
Q Consensus 167 IeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTK--GKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK~ALS~ 244 (733)
.++|++|||+=++.-.+. ...+++..| |..+.|.|-|-.+-++...+.-+.++.--|+..+........
T Consensus 157 ~~~g~aleins~~~~~~~---------~~~~~~~~~e~G~~~~i~tDaH~~~~lg~~~~~~~~~~~a~~~~~~i~~~~~~ 227 (237)
T COG1387 157 EKNGKALEINSRPGRLDP---------NSEILRLARELGVKLAIGTDAHRPGDLGDMYFGVKIARRAGLTKERIINTSDA 227 (237)
T ss_pred HHhCcEEeecCCcCccCc---------hHHHHHHHHHhCCeEEeecCcCChhhcccchHHHHHHHHhcCCccceEeccch
Confidence 999999999998554443 123444443 899999999999999999999888888777777766555544
Q ss_pred hHH
Q 004730 245 NCR 247 (733)
Q Consensus 245 nPr 247 (733)
.+.
T Consensus 228 ~~~ 230 (237)
T COG1387 228 EGL 230 (237)
T ss_pred hHH
Confidence 443
No 11
>PRK08609 hypothetical protein; Provisional
Probab=97.09 E-value=0.0059 Score=70.05 Aligned_cols=206 Identities=15% Similarity=0.113 Sum_probs=121.7
Q ss_pred eeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEE-eeeecCccCCCCCCCCChhhHHHhhhcCCCccccccccc
Q 004730 3 FFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAY-NRTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHR 81 (733)
Q Consensus 3 FYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAI-N~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~~ 81 (733)
.+|+.+|..-++. . ....+++..|.+.||+.+++ .|. +. .... ....+-.+..... .+..
T Consensus 335 ~~DlH~HT~~sDg--~----~sleemv~~A~~~Gl~~i~iTdH~-~~-~~~~--~~~~~~~l~~~~~---------ei~~ 395 (570)
T PRK08609 335 QGDLHMHTTWSDG--A----FSIEEMVEACIAKGYEYMAITDHS-QY-LKVA--NGLTEERLLEQAE---------EIKA 395 (570)
T ss_pred cCCccccCCCCCC--C----CCHHHHHHHHHHCCCCEEEEeCCC-CC-cccc--CCCCHHHHHHHHH---------HHHH
Confidence 4688888664321 1 11345889999999999999 453 11 0000 0011111110000 0000
Q ss_pred ccCCCCCCCCceeEEEEEEEeCChhhhhhccCCCCCCc--cccEEEEe-cC--C----HHHHHHHHhcCCCceEEecCC-
Q 004730 82 DLLGVPRCSPFRQYTRLTVFADTIAQCQVLNSGNPVLK--TYDLVAVR-PL--N----QSAFDHACEKAEVDIISINFA- 151 (733)
Q Consensus 82 dllgv~~ssgLrILsRLTIvvsD~sql~~L~s~~k~lk--kYDIVAVr-P~--S----EkaFr~ACenldVDIISLD~s- 151 (733)
+. ....+|+|+.++++-+.......... .++. .|=|++|| +. + .+.+..|+.+..+|||.++-.
T Consensus 396 -l~--~~~~~i~Il~GiEv~i~~~g~~d~~~---~~L~~~D~vI~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~r 469 (570)
T PRK08609 396 -LN--EKYPEIDILSGIEMDILPDGSLDYDD---EVLAELDYVIAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGR 469 (570)
T ss_pred -HH--HhcCCCeEEEEEEEeecCCcchhhcH---HHHHhhCEEEEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCcc
Confidence 00 01236899999999986532211111 1223 34456664 11 1 134455667788999998763
Q ss_pred ---CCCCCCCC-HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhc--CCCcEEEccCCCCCCCCCCHHHHH
Q 004730 152 ---EKLPFRLK-LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWT--RGKNLILSSGASSVTELRGPYDVA 225 (733)
Q Consensus 152 ---~RLPF~LK-hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaT--KGKnIIISSGA~S~lELRSP~DVI 225 (733)
.+.+|... ...++.|+++|+.+||+-++.-.+. ...+++.. .|.+++|+|.|-++.++....-.+
T Consensus 470 li~~~~~~~~d~~~i~~~a~~~G~~lEINa~~~r~~~---------~~~~~~~~~e~Gv~i~igSDAH~~~~l~~~~~~v 540 (570)
T PRK08609 470 LIGRRDGYDVNIDQLIELAKETNTALELNANPNRLDL---------SAEHLKKAQEAGVKLAINTDAHHTEMLDDMKYGV 540 (570)
T ss_pred ccccCCCchHHHHHHHHHHHHhCCEEEEcCCccccCc---------cHHHHHHHHHcCCEEEEECCCCChhhhCcHHHHH
Confidence 12222222 3557778999999999988763221 23333333 277899999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHH
Q 004730 226 NLSSLLGISMERAKAAV 242 (733)
Q Consensus 226 NLl~LfGLseeeAK~AL 242 (733)
+++.=.|++.++...+.
T Consensus 541 ~~ar~~~~~~~~v~N~~ 557 (570)
T PRK08609 541 ATARKGWIQKDRVINTW 557 (570)
T ss_pred HHHHHcCCCHHHcccCC
Confidence 99999999988775543
No 12
>PRK08392 hypothetical protein; Provisional
Probab=96.88 E-value=0.054 Score=54.35 Aligned_cols=176 Identities=14% Similarity=0.071 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCcEEEEe-eeecCccCCCCCCCCChhhHHHhhhcCCCcccccccccccCCCCCCCCceeEEEEEEEeCC
Q 004730 26 VKIVIKAMELGYTGVAYN-RTMKGVMSDRDRCSIPLLTLAALLKLAPSLSASVNFHRDLLGVPRCSPFRQYTRLTVFADT 104 (733)
Q Consensus 26 lkLL~~A~eLGYsgVAIN-~tI~g~l~ek~~~~iPPl~lsel~kl~PslssS~~l~~dllgv~~ssgLrILsRLTIvvsD 104 (733)
.+++..|.+.|++.+||. |. +-.... .+ +.-+.+...+ ....+++++.++++-+..
T Consensus 17 ~e~v~~A~~~Gl~~i~iTdH~-~~~~~~----~~-~~y~~~i~~l-----------------~~~~~i~il~GiE~~~~~ 73 (215)
T PRK08392 17 RDNIAEAERKGLRLVGISDHI-HYFTPS----KF-NAYINEIRQW-----------------GEESEIVVLAGIEANITP 73 (215)
T ss_pred HHHHHHHHHcCCCEEEEccCC-Cccchh----hH-HHHHHHHHHH-----------------hhccCceEEEeEEeeecC
Confidence 368899999999999994 43 210000 01 0001111110 112458999999987654
Q ss_pred hhhhhhccCCCCCCccccE--EEEe-cC---C-H---HHHHHHHhcCCCceEEecCCCCCCCC-----CC-HHHHHHHHH
Q 004730 105 IAQCQVLNSGNPVLKTYDL--VAVR-PL---N-Q---SAFDHACEKAEVDIISINFAEKLPFR-----LK-LPMIKAAIE 168 (733)
Q Consensus 105 ~sql~~L~s~~k~lkkYDI--VAVr-P~---S-E---kaFr~ACenldVDIISLD~s~RLPF~-----LK-hklaraAIe 168 (733)
... . +. ..+++.+|. .+|+ .. . + +.+..|+++..+|||.+.-.. +++. -. ...+++|++
T Consensus 74 ~~~-~-~~--~~~~~~~D~vI~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~-~~~~~~~~~~~~~~i~~~~~~ 148 (215)
T PRK08392 74 NGV-D-IT--DDFAKKLDYVIASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNS-FPYIGYPSEEELKEILDLAEA 148 (215)
T ss_pred Ccc-h-hH--HHHHhhCCEEEEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCcc-ccCCCCchHHHHHHHHHHHHH
Confidence 221 1 11 123345554 5666 11 1 1 233456678899999974322 2221 01 355799999
Q ss_pred cCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHH
Q 004730 169 RGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERA 238 (733)
Q Consensus 169 RGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeA 238 (733)
+|+.+||+-..- .+ . ..++..++. .|.+++|+|.|-.+.++-.-.....++.-+|++.++.
T Consensus 149 ~g~~lEiNt~~~--~p-~-~~~l~~~~~-----~G~~~~igSDAH~~~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 149 YGKAFEISSRYR--VP-D-LEFIRECIK-----RGIKLTFASDAHRPEDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred hCCEEEEeCCCC--CC-C-HHHHHHHHH-----cCCEEEEeCCCCChHHCCcHHHHHHHHHHcCCCHHHe
Confidence 999999996321 11 1 122222222 2788999999999988876555677777778887653
No 13
>PRK08123 histidinol-phosphatase; Reviewed
Probab=95.13 E-value=0.33 Score=50.52 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcC--CCcEEEccCCCCCCCC
Q 004730 160 LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTEL 218 (733)
Q Consensus 160 hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTK--GKnIIISSGA~S~lEL 218 (733)
...+++++++|+.+||+-+.+-+.. ..-......+++..+ |.+|+|+|.|-.+.++
T Consensus 200 ~~il~~~~~~g~~lEINtsgl~~~~---~~~~yP~~~il~~~~e~g~~itlgSDAH~~~~v 257 (270)
T PRK08123 200 EDILALIKKRGYELDFNTAGLRKPY---CGEPYPPGEIITLAKKLGIPLVYGSDAHSAADV 257 (270)
T ss_pred HHHHHHHHHcCCEEEEEchhhcCCC---CCCCCCcHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence 5678999999999999987653320 000112223333332 7789999999988765
No 14
>PRK05588 histidinol-phosphatase; Provisional
Probab=92.11 E-value=0.63 Score=47.72 Aligned_cols=135 Identities=10% Similarity=0.092 Sum_probs=75.5
Q ss_pred CceeEEEEEEEeCChhhhhhccCCCCCCc--cccE--EEEecCC--------------H--------HHHHHHHh-cCCC
Q 004730 91 PFRQYTRLTVFADTIAQCQVLNSGNPVLK--TYDL--VAVRPLN--------------Q--------SAFDHACE-KAEV 143 (733)
Q Consensus 91 gLrILsRLTIvvsD~sql~~L~s~~k~lk--kYDI--VAVrP~S--------------E--------kaFr~ACe-nldV 143 (733)
+++|+.++++-+.... ..... .+++ .+|. .+||-.. . +.+..|++ ...+
T Consensus 64 ~~~I~~GiE~~~~~~~-~~~~~---~~l~~~~~D~vigSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~ 139 (255)
T PRK05588 64 NNKLLLGIELGMEKDL-IEENK---ELINKYEFDYVIGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFI 139 (255)
T ss_pred cCCcceEEEecccCCC-HHHHH---HHHhhCCCCeEEEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3688999999654321 11111 1222 4555 7887531 1 23344555 3569
Q ss_pred ceEEec-CCCCCCCCCC------------HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhc--CCCc-EE
Q 004730 144 DIISIN-FAEKLPFRLK------------LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWT--RGKN-LI 207 (733)
Q Consensus 144 DIISLD-~s~RLPF~LK------------hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaT--KGKn-II 207 (733)
|+|.++ +-.|.....+ ...+++++++|+.+||+-+.+-+... ......+++.. .|.+ |+
T Consensus 140 dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~-----~~~~~~~l~~~~~~g~~~i~ 214 (255)
T PRK05588 140 DSLGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEKEKVLEINTRRLDDKRS-----VENLVKIYKRFYELGGKYIT 214 (255)
T ss_pred CCccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHcCCEEEEECcccCCCCC-----CCCHHHHHHHHHHcCCcEEE
Confidence 999955 3322111000 45679999999999999865433210 11222333222 2444 89
Q ss_pred EccCCCCCCCCC-CHHHHHHHHHHhCCC
Q 004730 208 LSSGASSVTELR-GPYDVANLSSLLGIS 234 (733)
Q Consensus 208 ISSGA~S~lELR-SP~DVINLl~LfGLs 234 (733)
|+|.|-.+.++. .-.....++.-+|++
T Consensus 215 lgSDAH~~~~vg~~~~~~~~~l~~~G~~ 242 (255)
T PRK05588 215 LGSDAHNIEDIGNNFKFALEIAEYCNLK 242 (255)
T ss_pred EECCCCCHHHHHhhHHHHHHHHHHcCCE
Confidence 999999988874 455555555555553
No 15
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=91.20 E-value=5.1 Score=39.68 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=69.2
Q ss_pred HHHHHHHHhc-CCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEc
Q 004730 131 QSAFDHACEK-AEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILS 209 (733)
Q Consensus 131 EkaFr~ACen-ldVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIIS 209 (733)
.++++.+.+. ....+|.+.+.. ....++.++++|++|.++......+. ...+.+++......|+++
T Consensus 133 ~~~~~~l~~~~~~~~~i~H~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~i~~~~~dril~~ 199 (252)
T TIGR00010 133 EDVLDILREEKPKVGGVLHCFTG------DAELAKKLLDLGFYISISGIVTFKNA-------KSLREVVRKIPLERLLVE 199 (252)
T ss_pred HHHHHHHHhcCCCCCEEEEccCC------CHHHHHHHHHCCCeEeeceeEecCCc-------HHHHHHHHhCCHHHeEec
Confidence 3444444332 255677766532 24678889999999999965433221 233455555555789999
Q ss_pred cCCCCCC--CCC----CHHHHHH----HHHHhCCCHHHHHHHHHHhHHHHH
Q 004730 210 SGASSVT--ELR----GPYDVAN----LSSLLGISMERAKAAVSKNCRALI 250 (733)
Q Consensus 210 SGA~S~l--ELR----SP~DVIN----Ll~LfGLseeeAK~ALS~nPrsLL 250 (733)
|.+.-.. ..| .|..+.. ++.+.|++.+++.+.++.||+.++
T Consensus 200 TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~~~g~~~~~~~~~~~~N~~~~~ 250 (252)
T TIGR00010 200 TDSPYLAPVPYRGKRNEPAFVRYTVEAIAEIKGMDVEELAQITTKNAKRLF 250 (252)
T ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHh
Confidence 9985421 223 4545443 355789999999999999998875
No 16
>PRK07329 hypothetical protein; Provisional
Probab=88.44 E-value=1.5 Score=45.16 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=59.6
Q ss_pred HHHHHHhcC-CCceEEecCC-CCC----CCCCC------HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhh
Q 004730 133 AFDHACEKA-EVDIISINFA-EKL----PFRLK------LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDW 200 (733)
Q Consensus 133 aFr~ACenl-dVDIISLD~s-~RL----PF~LK------hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRa 200 (733)
.+..++++. .+|+|.++-. -|. +..++ ...+++|.++|+.+||+-+.+.+...... ...+++.
T Consensus 129 ~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~-----~~~~l~~ 203 (246)
T PRK07329 129 KMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGL-----YRYAIEL 203 (246)
T ss_pred HHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcc-----hHHHHHH
Confidence 344566667 8999995542 221 11111 25668999999999999988754321110 1222333
Q ss_pred cC--C-CcEEEccCCCCCCCC-CCHHHHHHHHHHhCCC
Q 004730 201 TR--G-KNLILSSGASSVTEL-RGPYDVANLSSLLGIS 234 (733)
Q Consensus 201 TK--G-KnIIISSGA~S~lEL-RSP~DVINLl~LfGLs 234 (733)
.+ | .+|+|+|-|-.+.++ +.-.....++.-+|++
T Consensus 204 ~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~~ 241 (246)
T PRK07329 204 YKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGIK 241 (246)
T ss_pred HHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 32 4 458999999999887 4444556666666664
No 17
>PRK06740 histidinol-phosphatase; Validated
Probab=87.77 E-value=0.76 Score=49.79 Aligned_cols=125 Identities=16% Similarity=0.040 Sum_probs=71.2
Q ss_pred CceeEEEEEEEeC-Ch-hhhhhccCCCCCCccccEEEEecCC---------H----------------HHHHHHHhcCCC
Q 004730 91 PFRQYTRLTVFAD-TI-AQCQVLNSGNPVLKTYDLVAVRPLN---------Q----------------SAFDHACEKAEV 143 (733)
Q Consensus 91 gLrILsRLTIvvs-D~-sql~~L~s~~k~lkkYDIVAVrP~S---------E----------------kaFr~ACenldV 143 (733)
+++|+.++++-+- +. ..+..+.. ..--.|=|.+||-.+ . +....|+++..+
T Consensus 139 ~I~Il~GlE~dy~~~~~~~~~~~l~--~~~~DyvIgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~f 216 (331)
T PRK06740 139 GVTLKLGIEADYFIGGEQELQSLLA--LGDFDYVIGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELF 216 (331)
T ss_pred CCeEEEEEEeccCCCcHHHHHHHHh--cCCCCEEEEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 6999999999873 22 22222211 111134566776422 1 344456778899
Q ss_pred ceEEec-CCCCCCCC--------CCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhc--CCCcEEEccCC
Q 004730 144 DIISIN-FAEKLPFR--------LKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWT--RGKNLILSSGA 212 (733)
Q Consensus 144 DIISLD-~s~RLPF~--------LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaT--KGKnIIISSGA 212 (733)
|||.++ +-.+..+. .=...+++|.++|+.+||+-+..++.+. .-+.-...+++.. .|.+|+|+|.|
T Consensus 217 dvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~---~e~yP~~~il~~~~e~Gv~~tlgSDA 293 (331)
T PRK06740 217 DIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETNTATEINAGLYYRYPV---REMCPSPLFLQVLAKHEVPITLSSDA 293 (331)
T ss_pred CEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcCCEEEEECccccCCCC---CCCCcCHHHHHHHHHCCCeEEEeeCC
Confidence 999955 33221111 1135668999999999999974443221 0011111233222 38889999999
Q ss_pred CCCCCCCC
Q 004730 213 SSVTELRG 220 (733)
Q Consensus 213 ~S~lELRS 220 (733)
-.+.++-.
T Consensus 294 H~p~~VG~ 301 (331)
T PRK06740 294 HYPNDLGK 301 (331)
T ss_pred CCHHHHHh
Confidence 98766533
No 18
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=86.57 E-value=23 Score=35.00 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=66.7
Q ss_pred CHHHHHHHHhcC-CCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEE
Q 004730 130 NQSAFDHACEKA-EVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLIL 208 (733)
Q Consensus 130 SEkaFr~ACenl-dVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIII 208 (733)
...+++.+.+-. ...+|.+-++. ....++.++++|++|.++-....... . ..+.+++....-+|++
T Consensus 132 ~~~~~~l~~~~~~~~~~i~H~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~----~---~~~~~~~~~~~dril~ 198 (251)
T cd01310 132 HEDVLEILKEYGPPKRGVFHCFSG------SAEEAKELLDLGFYISISGIVTFKNA----N---ELREVVKEIPLERLLL 198 (251)
T ss_pred hHHHHHHHHhcCCCCCEEEEccCC------CHHHHHHHHHcCCEEEeeeeeccCCC----H---HHHHHHHhCChHHEEE
Confidence 445555555543 45666654432 23588888999999988854322111 1 2234555555557999
Q ss_pred ccCCCCCCCCC------CHHH----HHHHHHHhCCCHHHHHHHHHHhHHHHH
Q 004730 209 SSGASSVTELR------GPYD----VANLSSLLGISMERAKAAVSKNCRALI 250 (733)
Q Consensus 209 SSGA~S~lELR------SP~D----VINLl~LfGLseeeAK~ALS~nPrsLL 250 (733)
+|.+......+ .|.. +..++...|++.+++.+.+..||+.++
T Consensus 199 ~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~e~~~~~~~~N~~~ll 250 (251)
T cd01310 199 ETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAKRLF 250 (251)
T ss_pred cccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 99875432211 2222 333445799999999999999998775
No 19
>PRK09875 putative hydrolase; Provisional
Probab=86.05 E-value=7.2 Score=41.99 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHcCeEEEEEecccc--cChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCC---------HHHHHH
Q 004730 158 LKLPMIKAAIERGVYFELTYSDLI--LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRG---------PYDVAN 226 (733)
Q Consensus 158 LKhklaraAIeRGV~FEI~YSplI--~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRS---------P~DVIN 226 (733)
.+...++..+++|+++|++.-..- .....| +...+.|++......|+||+.......++. ...++-
T Consensus 191 ~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r---~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg~G~~~i~~~~ip 267 (292)
T PRK09875 191 DNLDNILKMIDLGAYVQFDTIGKNSYYPDEKR---IAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIP 267 (292)
T ss_pred CCHHHHHHHHHcCCEEEeccCCCcccCCHHHH---HHHHHHHHhcCCCCeEEEeCCCCCcccccccCCCChhHHHHHHHH
Confidence 567788999999999999632111 122344 455567777788889999998866655555 344555
Q ss_pred HHHHhCCCHHHHHHHHHHhHHHHH
Q 004730 227 LSSLLGISMERAKAAVSKNCRALI 250 (733)
Q Consensus 227 Ll~LfGLseeeAK~ALS~nPrsLL 250 (733)
.+.--|+++++.++.+..||+.++
T Consensus 268 ~L~~~Gvse~~I~~m~~~NP~r~~ 291 (292)
T PRK09875 268 QLRQSGFSQADVDVMLRENPSQFF 291 (292)
T ss_pred HHHHcCCCHHHHHHHHHHCHHHHh
Confidence 556669999999999999998764
No 20
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=82.48 E-value=7.9 Score=39.89 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=62.6
Q ss_pred CHHHHHHHHHcCeEEEEEeccccc-----ChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCC--CC----C----HHH
Q 004730 159 KLPMIKAAIERGVYFELTYSDLIL-----DVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTE--LR----G----PYD 223 (733)
Q Consensus 159 KhklaraAIeRGV~FEI~YSplI~-----Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lE--LR----S----P~D 223 (733)
....++.++++|++|.|+...... ....| ...++.+++....-.|+|+|.+....- .| . ++-
T Consensus 190 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~~ 266 (293)
T cd00530 190 DPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETR---ADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILTR 266 (293)
T ss_pred CHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHH---HHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHHH
Confidence 457899999999999999765432 11122 234566676666678999998876322 22 2 445
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhHHHH
Q 004730 224 VANLSSLLGISMERAKAAVSKNCRAL 249 (733)
Q Consensus 224 VINLl~LfGLseeeAK~ALS~nPrsL 249 (733)
+..++...|++.+++.+.+..||+.+
T Consensus 267 ~~~~~~~~g~~~e~i~~~~~~N~~~l 292 (293)
T cd00530 267 FIPRLRERGVTEEQLDTILVENPARF 292 (293)
T ss_pred HHHHHHHcCCCHHHHHHHHHHCHHHh
Confidence 56677788999999999999999765
No 21
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=80.53 E-value=10 Score=42.16 Aligned_cols=120 Identities=30% Similarity=0.357 Sum_probs=83.8
Q ss_pred EEEecCCHHHH-HHHHhcC-CCceEEecCCCCC-----CCCCCHHHHHHHHHcCeEEEEEecccccC-hHHHHHHHHHHH
Q 004730 124 VAVRPLNQSAF-DHACEKA-EVDIISINFAEKL-----PFRLKLPMIKAAIERGVYFELTYSDLILD-VQLRRQMISNAK 195 (733)
Q Consensus 124 VAVrP~SEkaF-r~ACenl-dVDIISLD~s~RL-----PF~LKhklaraAIeRGV~FEI~YSplI~D-s~sRrn~IsNar 195 (733)
++|+-+..-.+ ....+-+ +=||||+=|..+- +-+-=+..++.|.+|||.|.+--+-...+ .-+|+. |
T Consensus 188 lmvHigePp~~~dEvlerL~~GDIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfsf~vAr~a-i---- 262 (386)
T COG3964 188 LMVHIGEPPVLMDEVLERLRRGDIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFSFNVARRA-I---- 262 (386)
T ss_pred eEEecCCCCccHHHHHHhccCCceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCcceeeHHHHHHH-H----
Confidence 66776666555 4444444 5699998775332 12223688999999999999877655544 333333 2
Q ss_pred HHHhhcCC-CcEEEccCCCCCCCCCCH-HHHHHHH---HHhCCCHHHHHHHHHHhHHHHHHhh
Q 004730 196 LLVDWTRG-KNLILSSGASSVTELRGP-YDVANLS---SLLGISMERAKAAVSKNCRALISNA 253 (733)
Q Consensus 196 ~LIRaTKG-KnIIISSGA~S~lELRSP-~DVINLl---~LfGLseeeAK~ALS~nPrsLL~~A 253 (733)
..| -|-+|||.-.....+-.| +|+.+.. .-+||+-.+..+|.+.||-.+|...
T Consensus 263 -----a~GllP~~ISSDlh~~~~~n~Pv~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l~ 320 (386)
T COG3964 263 -----ANGLLPDIISSDLHTITKLNGPVYDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGLA 320 (386)
T ss_pred -----hcCCCcceeeccceeeeecCchHHHHHHHHHHHHHcCCcHHHHHHHHhcCHHHHhCcc
Confidence 334 588999999888866665 6776654 3569999999999999999888655
No 22
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=61.31 E-value=1.7e+02 Score=32.00 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=90.9
Q ss_pred EEEEecCCHHHHHHHHhcCC-CceEEecCC---CCCCCCCCHHHHHHHHHcCeEEEEEecccccC---hHHHHHHHHHHH
Q 004730 123 LVAVRPLNQSAFDHACEKAE-VDIISINFA---EKLPFRLKLPMIKAAIERGVYFELTYSDLILD---VQLRRQMISNAK 195 (733)
Q Consensus 123 IVAVrP~SEkaFr~ACenld-VDIISLD~s---~RLPF~LKhklaraAIeRGV~FEI~YSplI~D---s~sRrn~IsNar 195 (733)
||-|-=.+++.|..+++-.+ +=|+|+--. ...|--+.-.++++.+++|-.+.|++.+.... ...-..++.++.
T Consensus 169 iiDvSH~s~~~~~dv~~~s~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~~~~~fl~~~~~~~~~~~~~hi~ 248 (309)
T cd01301 169 IIDLSHLSERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAFLSPGADATLDDVVRHID 248 (309)
T ss_pred EEEcCCCCHHHHHHHHHhcCCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeHHHhCCCCCCCHHHHHHHHH
Confidence 57777788899999987554 445555442 12233467789999999999999999876642 334455677777
Q ss_pred HHHhhcCCCcEEEcc---CCC-CCCCCCCHHHHHHHHHHh---CCCHHHHHHHHHHhHH
Q 004730 196 LLVDWTRGKNLILSS---GAS-SVTELRGPYDVANLSSLL---GISMERAKAAVSKNCR 247 (733)
Q Consensus 196 ~LIRaTKGKnIIISS---GA~-S~lELRSP~DVINLl~Lf---GLseeeAK~ALS~nPr 247 (733)
.++....-..|-|.| |.. .+..+.++.++-+|...| |.++++..+.+..|..
T Consensus 249 ~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i~~i~g~N~l 307 (309)
T cd01301 249 YIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDLPNLTAELLERGYSEEEIEKIAGGNFL 307 (309)
T ss_pred HHHHhcCCCeEEECcccCCCCCCccccCCHHHHHHHHHHHHHcCCCHHHHHHHHhhchh
Confidence 777777667788887 233 345688999999997655 9999999999988874
No 23
>PRK10812 putative DNAse; Provisional
Probab=60.06 E-value=70 Score=33.78 Aligned_cols=86 Identities=15% Similarity=0.260 Sum_probs=60.0
Q ss_pred CHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCC--CCCCC----HHHHHH----HH
Q 004730 159 KLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSV--TELRG----PYDVAN----LS 228 (733)
Q Consensus 159 KhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~--lELRS----P~DVIN----Ll 228 (733)
....++.++++|.+|-|.-. .... | -.+.+.+++..+--.|++.|-+... .-.|+ |..|.. ++
T Consensus 160 ~~~~a~~~~~~G~~is~~g~-~t~~---~---~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia 232 (265)
T PRK10812 160 DRETAGKLLDLGFYISFSGI-VTFR---N---AEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMA 232 (265)
T ss_pred CHHHHHHHHHCCCEEEECee-eecC---c---cHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHH
Confidence 35689999999999988722 2111 1 1234567777777779999988542 22333 666654 34
Q ss_pred HHhCCCHHHHHHHHHHhHHHHHH
Q 004730 229 SLLGISMERAKAAVSKNCRALIS 251 (733)
Q Consensus 229 ~LfGLseeeAK~ALS~nPrsLL~ 251 (733)
.+.|++.++..+.+..|++.++.
T Consensus 233 ~l~g~~~eei~~~~~~N~~~lf~ 255 (265)
T PRK10812 233 VLKGVSVEELAQVTTDNFARLFH 255 (265)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHC
Confidence 67899999999999999998873
No 24
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=53.42 E-value=16 Score=37.84 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCeEEEEEecccccCh---HHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCC
Q 004730 160 LPMIKAAIERGVYFELTYSDLILDV---QLRRQMISNAKLLVDWTRGKNLILSSGASSVTEL 218 (733)
Q Consensus 160 hklaraAIeRGV~FEI~YSplI~Ds---~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lEL 218 (733)
...+++++++|+++||+-+.+-++. .--..++..++++ |.+|+|+|.|-.+.++
T Consensus 188 ~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~~~il~~~~~~-----g~~itlgSDAH~~~~v 244 (253)
T TIGR01856 188 QRILKLVASQGKALEFNTSGLRKPLEEAYPSKELLNLAKEL-----GIPLVLGSDAHGPGDV 244 (253)
T ss_pred HHHHHHHHHcCCEEEEEcHhhcCCCCCCCCCHHHHHHHHHc-----CCCEEecCCCCCHHHH
Confidence 4677899999999999998654321 1112233333322 7889999999988664
No 25
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=53.18 E-value=96 Score=34.47 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhc---CCCcEEEccCCCCCCCCC---CHHHHHHHHH
Q 004730 156 FRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWT---RGKNLILSSGASSVTELR---GPYDVANLSS 229 (733)
Q Consensus 156 F~LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaT---KGKnIIISSGA~S~lELR---SP~DVINLl~ 229 (733)
+..-...+..++++|+++-|..+..-. +.+.+++.. .+.+++++|.+..+..+. ....++.++.
T Consensus 162 ~~~~~eea~e~l~~G~~i~i~~g~~~~----------~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~~~g~~~~v~r~a~ 231 (422)
T cd01295 162 EAMTGEEALEKLRLGMYVMLREGSIAK----------NLEALLPAITEKNFRRFMFCTDDVHPDDLLSEGHLDYIVRRAI 231 (422)
T ss_pred CCCcHHHHHHHHHCCCEEEEECcccHh----------hHHHHHHhhhhccCCeEEEEcCCCCchhhhhcchHHHHHHHHH
Confidence 445567778888999999877554311 112222222 367899999986554442 3345556677
Q ss_pred HhCCCHHHHHHHHHHhHHHHH
Q 004730 230 LLGISMERAKAAVSKNCRALI 250 (733)
Q Consensus 230 LfGLseeeAK~ALS~nPrsLL 250 (733)
..|++.++|.++.+.||..++
T Consensus 232 ~~g~s~~eal~~aT~n~A~~~ 252 (422)
T cd01295 232 EAGIPPEDAIQMATINPAECY 252 (422)
T ss_pred HcCCCHHHHHHHHhHHHHHHc
Confidence 789999999999999997765
No 26
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=51.73 E-value=38 Score=36.88 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHcCeEEEEEec-----cc-------ccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCH----
Q 004730 158 LKLPMIKAAIERGVYFELTYS-----DL-------ILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP---- 221 (733)
Q Consensus 158 LKhklaraAIeRGV~FEI~YS-----pl-------I~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP---- 221 (733)
.+...++..+++|++++++.- .. ......|. .....|++...+..|++|..+.....++.+
T Consensus 195 ~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri---~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g 271 (308)
T PF02126_consen 195 PDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERI---ELLKELIEEGYADQILLSHDIGRKSRLYRYGGGG 271 (308)
T ss_dssp T-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHH---HHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHH
T ss_pred CCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHH---HHHHHHHHcCCcCcEEEeccccccccccccCCCC
Confidence 355678889999999998655 11 11223444 455678888888999999988873333221
Q ss_pred ----H---HHHHHHHHhCCCHHHHHHHHHHhHHHHH
Q 004730 222 ----Y---DVANLSSLLGISMERAKAAVSKNCRALI 250 (733)
Q Consensus 222 ----~---DVINLl~LfGLseeeAK~ALS~nPrsLL 250 (733)
+ .++=.+.--|+++++..+.+-.||+.++
T Consensus 272 ~~~~~i~~~fiP~L~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 272 YGYIYILTRFIPRLKERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp HTTTHHHHTHHHHHHHTTS-HHHHHHHHTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHc
Confidence 1 2333334459999999999999998876
No 27
>PTZ00124 adenosine deaminase; Provisional
Probab=49.35 E-value=1.2e+02 Score=33.91 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=58.2
Q ss_pred CHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHH
Q 004730 159 KLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERA 238 (733)
Q Consensus 159 KhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeA 238 (733)
+..+++...++||.+|+|..+=+.-+...--.-.-++.++ ..|.+|.|+|.-...+.-.-..+...+...||++.++-
T Consensus 259 d~~l~~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPi~~l~--~~Gv~v~InTDDp~~~~t~l~~Ey~~~~~~~gls~~~l 336 (362)
T PTZ00124 259 SQELIDMVKEKDILLEVCPISNVLLNNAKSMDTHPIRKLY--DAGVKVSVNSDDPGMFLTNINDDYEELYTHLNFTLADF 336 (362)
T ss_pred CHHHHHHHHHcCCeEEECCcchhhhhcCCchhhHHHHHHH--HCCCcEEEeCCCccccCCChhHHHHHHHHHcCCCHHHH
Confidence 3578888999999999998865532111100012223333 45899999999888888777788888889999999887
Q ss_pred HHHH
Q 004730 239 KAAV 242 (733)
Q Consensus 239 K~AL 242 (733)
++..
T Consensus 337 ~~l~ 340 (362)
T PTZ00124 337 MKMN 340 (362)
T ss_pred HHHH
Confidence 6644
No 28
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=46.20 E-value=45 Score=32.41 Aligned_cols=90 Identities=17% Similarity=0.042 Sum_probs=58.3
Q ss_pred HHHHHHcCeEEEEEe---------ccccc-ChHHHHHHHHHHHHHHhhc-CCCcEEEccCCCCC---CCCCCHHHHHHHH
Q 004730 163 IKAAIERGVYFELTY---------SDLIL-DVQLRRQMISNAKLLVDWT-RGKNLILSSGASSV---TELRGPYDVANLS 228 (733)
Q Consensus 163 araAIeRGV~FEI~Y---------SplI~-Ds~sRrn~IsNar~LIRaT-KGKnIIISSGA~S~---lELRSP~DVINLl 228 (733)
+..+...++.....+ ..... .+..+...-.....+.++. .|..+.|+|.+... ........+..++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~ 264 (304)
T PF13147_consen 185 VAIAHGFGLPPTPLHLLARDAAAAGIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLA 264 (304)
T ss_dssp HHHHHHTTHEEEEEEHHHHHHHHHGGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHH
T ss_pred HHHHHhhccccchHHhhHHHHHhcCceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHH
Confidence 566777787777777 33221 1111111111111222332 37899999988765 6667778888888
Q ss_pred HHhCCCHHHHHHHHHHhHHHHHHh
Q 004730 229 SLLGISMERAKAAVSKNCRALISN 252 (733)
Q Consensus 229 ~LfGLseeeAK~ALS~nPrsLL~~ 252 (733)
..+||+.++|-++++.||..++--
T Consensus 265 ~~~gl~~~~al~~~T~~pA~~lgl 288 (304)
T PF13147_consen 265 VRAGLSPEEALRAATSNPARILGL 288 (304)
T ss_dssp HHTSSTHHHHHHHHTHHHHHHTTB
T ss_pred hhcCCCHHHHHHHHHHHHHHHhCC
Confidence 889999999999999999888743
No 29
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.67 E-value=73 Score=35.96 Aligned_cols=92 Identities=20% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHH--cCeEEEEEecccccC-h-HHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHh
Q 004730 156 FRLKLPMIKAAIE--RGVYFELTYSDLILD-V-QLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLL 231 (733)
Q Consensus 156 F~LKhklaraAIe--RGV~FEI~YSplI~D-s-~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~Lf 231 (733)
..+++..+...++ .|+. |..++.. . .-|-....+++.++ -.|.+|.|++-..-...+.+-...++|+...
T Consensus 261 ~~ld~~~~~~~a~~~~g~~----~~~l~p~~~~~l~e~~~~~~~~l~--~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~ 334 (406)
T COG1228 261 TLLDHETAALLAEKGAGTP----VPVLLPRTKFELRELDYKPARKLI--DAGVKVAIGTDHNPGTSHGSLALEMALAVRL 334 (406)
T ss_pred hhcCHhHHHHHhhccCCCc----cccccchhhhhhhcccchhHHHHH--HCCCEEEEEcCCCCCchhhHHHHHHHHHHHc
Confidence 4678889999999 4443 3222211 1 11111122334443 3588899988776655578888889999999
Q ss_pred CCCHHHHHHHHHHhHHHHHHhh
Q 004730 232 GISMERAKAAVSKNCRALISNA 253 (733)
Q Consensus 232 GLseeeAK~ALS~nPrsLL~~A 253 (733)
||+.++|.+|++-||...+-..
T Consensus 335 gmtp~EaL~a~T~naA~alG~~ 356 (406)
T COG1228 335 GMTPEEALKAATINAAKALGLA 356 (406)
T ss_pred CCCHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999998877444
No 30
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=44.51 E-value=1.2e+02 Score=32.74 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHHHcCeEEEEE-ecccccChHHHHHHHHHHHHHHhhcC-CCcEEEccCCC--CC----------CCCCCH---HH-
Q 004730 162 MIKAAIERGVYFELT-YSDLILDVQLRRQMISNAKLLVDWTR-GKNLILSSGAS--SV----------TELRGP---YD- 223 (733)
Q Consensus 162 laraAIeRGV~FEI~-YSplI~Ds~sRrn~IsNar~LIRaTK-GKnIIISSGA~--S~----------lELRSP---~D- 223 (733)
....++++|.++.+. ..+.++....+.+ +..+..+++... ..++.|||... .+ +...+. ..
T Consensus 235 ~~~~~~~~G~~~~v~~~~~~~~~~~~~~~-~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~ 313 (388)
T PRK10657 235 QALEFAKKGGVIDLTTSDPDFLGEGEVAP-AEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEE 313 (388)
T ss_pred HHHHHHHcCCeEEEecCCCcccccCccCH-HHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHH
Confidence 456688899999999 6665544321111 123334443332 23789999742 21 111112 22
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhHHHHHH
Q 004730 224 VANLSSLLGISMERAKAAVSKNCRALIS 251 (733)
Q Consensus 224 VINLl~LfGLseeeAK~ALS~nPrsLL~ 251 (733)
+..+....|++.+++.++.+.||..++.
T Consensus 314 ~~~~~~~~gis~~~~l~~aT~npA~~lg 341 (388)
T PRK10657 314 VRELVKDEGLPLEDALKPLTSNVARFLK 341 (388)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 2223336699999999999999988763
No 31
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=43.73 E-value=3.8e+02 Score=29.19 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=73.4
Q ss_pred cccEEEEecCCHHHHHHHHh---cCCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEEeccccc--C-hHHHHHHHHH
Q 004730 120 TYDLVAVRPLNQSAFDHACE---KAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLIL--D-VQLRRQMISN 193 (733)
Q Consensus 120 kYDIVAVrP~SEkaFr~ACe---nldVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~YSplI~--D-s~sRrn~IsN 193 (733)
+.--|.+|.........++. ...+++ ++.... .. ...+....+.|+.+-+ .|... . ...+..-+.+
T Consensus 191 ~~~~v~vHa~~~~~i~~~l~~~~e~g~~~-~i~H~~----~~-~~~~~~la~~gv~v~~--~P~~~~~~~~~~~~~~~~~ 262 (359)
T cd01309 191 GEIPVRIHAHRADDILTAIRIAKEFGIKI-TIEHGA----EG-YKLADELAKHGIPVIY--GPTLTLPKKVEEVNDAIDT 262 (359)
T ss_pred CCeeEEEEeCCHHHHHHHHHHHHHcCCCE-EEECch----hH-HHHHHHHHHcCCCEEE--CccccccccHHHhhcchhh
Confidence 33447778777776666654 356773 322221 12 4567777889998644 44332 1 1233334455
Q ss_pred HHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhHHHHHH
Q 004730 194 AKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALIS 251 (733)
Q Consensus 194 ar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK~ALS~nPrsLL~ 251 (733)
++.|... .|.++.++|...- ...+....-+.++..+||+.++|.++++.+|..++-
T Consensus 263 ~~~l~~a-GGv~valgsD~~~-~~~~~l~~~~~~a~~~gl~~~~al~~~T~n~A~~lg 318 (359)
T cd01309 263 NAYLLKK-GGVAFAISSDHPV-LNIRNLNLEAAKAVKYGLSYEEALKAITINPAKILG 318 (359)
T ss_pred HHHHHHc-CCceEEEECCCCC-ccchhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 5555543 2488888876532 233444444455567899999999999999988864
No 32
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=42.59 E-value=2.6e+02 Score=30.59 Aligned_cols=129 Identities=23% Similarity=0.262 Sum_probs=87.2
Q ss_pred EEEEecCCHHHHHHHHhcCCCceE-EecCC---CCCCCCCCHHHHHHHHHcCeEEEEEecccccCh-----HHHHHHHHH
Q 004730 123 LVAVRPLNQSAFDHACEKAEVDII-SINFA---EKLPFRLKLPMIKAAIERGVYFELTYSDLILDV-----QLRRQMISN 193 (733)
Q Consensus 123 IVAVrP~SEkaFr~ACenldVDII-SLD~s---~RLPF~LKhklaraAIeRGV~FEI~YSplI~Ds-----~sRrn~IsN 193 (733)
+|=|-=.+++.|.-+++..+.-+| |+--. ...|--+.-.++++..++|=.|-|++.+.+-+. ..-..++.+
T Consensus 175 ~vDvSH~s~~t~~Dv~~~s~~PviaSHSn~ral~~h~RNltDe~iraia~~GGviGi~~~~~fl~~~~~~~~~~~~~~~H 254 (320)
T PF01244_consen 175 LVDVSHLSEKTFWDVLEISKKPVIASHSNARALCPHPRNLTDEQIRAIAERGGVIGINFYPAFLGDDWDPRASLDDLVDH 254 (320)
T ss_dssp EEE-TTB-HHHHHHHHHH-SSEEEECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEEESSHHHHSTTHSSG-BHHHHHHH
T ss_pred eeeeccCCHHHHHHHHhhcCCCEEEeccChHhhCCCCCCCCHHHHHHHHHCCcEEEEEcchhhhcccccccccHHHHHHH
Confidence 344555678999999987776644 43332 123445677899999999999999999876432 244556666
Q ss_pred HHHHHhhcCCCcEEEccC---CCC-CCCCCCHHHHHHHHHHh---CCCHHHHHHHHHHhHHHHHH
Q 004730 194 AKLLVDWTRGKNLILSSG---ASS-VTELRGPYDVANLSSLL---GISMERAKAAVSKNCRALIS 251 (733)
Q Consensus 194 ar~LIRaTKGKnIIISSG---A~S-~lELRSP~DVINLl~Lf---GLseeeAK~ALS~nPrsLL~ 251 (733)
+..++....-..|=|.|. ... +.++.++.++-+|...| |+++++..+.+..|-..++.
T Consensus 255 i~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i~kI~g~N~lRv~~ 319 (320)
T PF01244_consen 255 IDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRGYSEEDIEKILGGNFLRVLR 319 (320)
T ss_dssp HHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHHHCCCCHHHHHHHHhHhHHHHhc
Confidence 666776665556666663 444 78999999999998776 99999999999999877764
No 33
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=41.87 E-value=1.1e+02 Score=35.81 Aligned_cols=85 Identities=11% Similarity=0.111 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCC---HHHHHHHHHHhCCCHH
Q 004730 160 LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRG---PYDVANLSSLLGISME 236 (733)
Q Consensus 160 hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRS---P~DVINLl~LfGLsee 236 (733)
..-+..++++|.++.+..+..-++- ..+..++.-..+.++.|+|...+++++.. ....+..+.-+|++..
T Consensus 207 ~~ea~e~~~~Gm~~~ir~gs~~~n~-------~~~~~~~~~~~~~~~~l~TD~~~~~~~~~~g~l~~~v~~ai~~g~~~~ 279 (552)
T TIGR01178 207 IEEAREKLRLGMKLMIREGSAAKNL-------EALHPLINEKNCRSLMLCTDDRHVNDILNEGHINHIVRRAIEHGVDPF 279 (552)
T ss_pred HHHHHHHHHCCCEEEEeCCccccCH-------HHHHHHHhhcCCceEEEEeCCCChhHHHhcCCHHHHHHHHHHcCCCHH
Confidence 4577889999999999777665542 22223332235688999998554443322 3445556666899999
Q ss_pred HHHHHHHHhHHHHHH
Q 004730 237 RAKAAVSKNCRALIS 251 (733)
Q Consensus 237 eAK~ALS~nPrsLL~ 251 (733)
+|.+..+.||...+.
T Consensus 280 ~Al~maT~npA~~lg 294 (552)
T TIGR01178 280 DALQMASINPAEHFG 294 (552)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999987763
No 34
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=41.15 E-value=4.5e+02 Score=27.66 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=71.4
Q ss_pred EEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEEeccccc----------ChH--H----
Q 004730 123 LVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLIL----------DVQ--L---- 186 (733)
Q Consensus 123 IVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~YSplI~----------Ds~--s---- 186 (733)
.+.+|.......+.+.+ ..+|.|.+- +.+....++...++|+++..|...... ... .
T Consensus 175 ~v~~H~~~~~~i~~~l~-~G~~~i~H~------~~~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T cd01299 175 YVAAHAYGAEAIRRAIR-AGVDTIEHG------FLIDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVAL 247 (342)
T ss_pred EEEEEeCCHHHHHHHHH-cCCCEEeec------CCCCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHH
Confidence 36677666666666554 456766542 234567888999999998877654321 000 0
Q ss_pred -HHHHHHHHHHHHhhcCCCcEEEccCCCC--CCCCCCHHHHHHHHHHhCCCHHHHHHHHHHhHHHHH
Q 004730 187 -RRQMISNAKLLVDWTRGKNLILSSGASS--VTELRGPYDVANLSSLLGISMERAKAAVSKNCRALI 250 (733)
Q Consensus 187 -Rrn~IsNar~LIRaTKGKnIIISSGA~S--~lELRSP~DVINLl~LfGLseeeAK~ALS~nPrsLL 250 (733)
+...+..++.+. -.|.+|.+.|.+.. .... +...-+.++.-.|++..+|.++.+.++..++
T Consensus 248 ~~~~~~~~~~~l~--~~Gv~v~~GTD~~~~~~~~~-~~~~e~~~~~~~~~~~~~al~~~T~~~a~~~ 311 (342)
T cd01299 248 VLEAGRDALRRAH--KAGVKIAFGTDAGFPVPPHG-WNARELELLVKAGGTPAEALRAATANAAELL 311 (342)
T ss_pred HHHHHHHHHHHHH--HcCCeEEEecCCCCCCCchh-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 122233333332 24788999887653 2221 2233334455579999999999999997765
No 35
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=36.93 E-value=2.2e+02 Score=30.13 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=48.9
Q ss_pred HHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHH-HHHHhCCCHHHHH
Q 004730 161 PMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVAN-LSSLLGISMERAK 239 (733)
Q Consensus 161 klaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVIN-Ll~LfGLseeeAK 239 (733)
..+....++||.+++|-..-+.-+..+..-...++.++ ..|.+|.|+|........ +-.+.+. +...+||+.++.+
T Consensus 225 ~~~~~l~~~gi~v~~~P~sn~~l~~~~~~~~~p~~~l~--~~Gv~v~lgTD~~~~~~~-~~~~e~~~~~~~~~l~~~el~ 301 (325)
T cd01320 225 ELVKRLAERNIPLEVCPTSNVQTGAVKSLAEHPLRELL--DAGVKVTINTDDPTVFGT-YLTDEYELLAEAFGLTEEELK 301 (325)
T ss_pred HHHHHHHHcCCeEEECCCccccccccCCcccChHHHHH--HCCCEEEECCCCCcccCC-CHHHHHHHHHHHcCCCHHHHH
Confidence 47888999999999998654432211111122333333 458899999986543332 3333333 4456899998865
Q ss_pred HHHHHhH
Q 004730 240 AAVSKNC 246 (733)
Q Consensus 240 ~ALS~nP 246 (733)
+ ++.|+
T Consensus 302 ~-~~~na 307 (325)
T cd01320 302 K-LARNA 307 (325)
T ss_pred H-HHHHH
Confidence 5 44544
No 36
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=35.02 E-value=1.1e+02 Score=29.50 Aligned_cols=86 Identities=17% Similarity=0.093 Sum_probs=52.0
Q ss_pred CHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHH---HhCCCH
Q 004730 159 KLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSS---LLGISM 235 (733)
Q Consensus 159 KhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~---LfGLse 235 (733)
....++.+.++|+++++|-....... .+...+..++.++ ..|.+++|+|-......--++...+..+. -+|++.
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~g~~~~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T cd01292 185 DPELLELLKEAGVSLEVCPLSNYLLG-RDGEGAEALRRLL--ELGIRVTLGTDGPPHPLGTDLLALLRLLLKVLRLGLSL 261 (275)
T ss_pred CHHHHHHHHHcCCeEEECCccccccc-CCcCCcccHHHHH--HCCCcEEEecCCCCCCCCCCHHHHHHHHHHHHhcCCCH
Confidence 45678888899999999977654431 0001112223333 33688999997755422233444444433 234789
Q ss_pred HHHHHHHHHhHH
Q 004730 236 ERAKAAVSKNCR 247 (733)
Q Consensus 236 eeAK~ALS~nPr 247 (733)
+++.++++.||.
T Consensus 262 ~~~~~~~t~n~a 273 (275)
T cd01292 262 EEALRLATINPA 273 (275)
T ss_pred HHHHHHHhcccc
Confidence 999988888763
No 37
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=33.27 E-value=1.5e+02 Score=31.80 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHH
Q 004730 160 LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK 239 (733)
Q Consensus 160 hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK 239 (733)
..+++...++||.+|+|...-+.-+....-.-.-++.++ ..|.+|.|+|.-...+.-.-..+..-+...+|++.++.+
T Consensus 204 p~~~~~l~~~~i~ie~CP~SN~~~~~~~~~~~hP~~~~~--~~G~~v~i~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~ 281 (305)
T cd00443 204 PELIYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFF--KAGLPVSLSTDDPGIFGTSLSEEYSLAAKTFGLTFEDLC 281 (305)
T ss_pred HHHHHHHHHcCCEEEECcchhhhhcCCCChhhChHHHHH--HCCCeEEEeCCCCcccCCChHHHHHHHHHHcCcCHHHHH
Confidence 477888999999999999864432100000001223333 348899999988887776556677777788999988866
Q ss_pred HHH
Q 004730 240 AAV 242 (733)
Q Consensus 240 ~AL 242 (733)
+..
T Consensus 282 ~l~ 284 (305)
T cd00443 282 ELN 284 (305)
T ss_pred HHH
Confidence 544
No 38
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=31.01 E-value=1.7e+02 Score=32.23 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhh-cCCCcEEEccCCCCCCCC-CCHHHHHHHHHHhC---CC
Q 004730 160 LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDW-TRGKNLILSSGASSVTEL-RGPYDVANLSSLLG---IS 234 (733)
Q Consensus 160 hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRa-TKGKnIIISSGA~S~lEL-RSP~DVINLl~LfG---Ls 234 (733)
..+++...++||.+|||..+=+.-+.. ..+.+ +-+-++ ..|.+|.|+|.-...+.- ---.+..-+...|| ++
T Consensus 236 p~ll~~l~~~~I~lEvCPtSN~~~~~v--~~~~~-HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~Ey~~~~~~~g~~~l~ 312 (345)
T cd01321 236 PLLMDLVKKKNIAIEVCPISNQVLGLV--SDLRN-HPAAALLARGVPVVISSDDPGFWGAKGLSHDFYQAFMGLAPADAG 312 (345)
T ss_pred HHHHHHHHHcCCeEEECcchhhhhccc--cchhh-ChHHHHHHCCCeEEEeCCCcchhCCCCchHHHHHHHHHhccCCCC
Confidence 578899999999999999854432110 01111 112222 458999999999988776 55677777777899 99
Q ss_pred HHHHHHHHH
Q 004730 235 MERAKAAVS 243 (733)
Q Consensus 235 eeeAK~ALS 243 (733)
.++.+....
T Consensus 313 ~~~l~~l~~ 321 (345)
T cd01321 313 LRGLKQLAE 321 (345)
T ss_pred HHHHHHHHH
Confidence 888665443
No 39
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=30.72 E-value=4.5e+02 Score=27.17 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=55.2
Q ss_pred CHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCC---------CCCCCCHHHH-HHHH
Q 004730 159 KLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASS---------VTELRGPYDV-ANLS 228 (733)
Q Consensus 159 KhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S---------~lELRSP~DV-INLl 228 (733)
...+++.+++.|++|=| ++.+.... -.+.+.+++..+...|+|=|.+.- ..+...-.++ ..++
T Consensus 160 ~~~~~~~~~~~g~~~S~--~~~~~~~~-----~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la 232 (255)
T PF01026_consen 160 SPEEAKKFLDLGCYFSF--SGAITFKN-----SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALA 232 (255)
T ss_dssp -HHHHHHHHHTTEEEEE--EGGGGSTT-----SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHH
T ss_pred CHHHHHHHHhcCceEEe--cccccccc-----cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHH
Confidence 46789999999999554 44443211 113566777788888999888732 1222222333 3466
Q ss_pred HHhCCCHHHHHHHHHHhHHHHH
Q 004730 229 SLLGISMERAKAAVSKNCRALI 250 (733)
Q Consensus 229 ~LfGLseeeAK~ALS~nPrsLL 250 (733)
.+.|++.++..+.+..|++.+.
T Consensus 233 ~~~~~~~e~~~~~~~~N~~r~f 254 (255)
T PF01026_consen 233 EIKGISLEELAQIIYENAKRLF 254 (255)
T ss_dssp HHHTSTHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999998764
No 40
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=30.45 E-value=1.7e+02 Score=32.20 Aligned_cols=88 Identities=26% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHH
Q 004730 157 RLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISME 236 (733)
Q Consensus 157 ~LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLsee 236 (733)
......++.+.++|+++-.+....++.+...-+ ..++.+++ .|..++|+|....+..+ .-+..+....||+..
T Consensus 204 p~t~e~a~~a~~~G~~vv~gapn~lrg~s~~g~--~~~~~ll~--~Gv~~al~SD~~p~sll---~~~~~la~~~gl~l~ 276 (325)
T cd01306 204 PTTLEAAKAARELGLQTLMGAPNVVRGGSHSGN--VSARELAA--HGLLDILSSDYVPASLL---HAAFRLADLGGWSLP 276 (325)
T ss_pred CCCHHHHHHHHHCCCEEEecCcccccCcccccc--HhHHHHHH--CCCeEEEEcCCCcHhHH---HHHHHHHHHcCCCHH
Confidence 356778999999999987765444544321111 12344443 47778999987533222 234455566799999
Q ss_pred HHHHHHHHhHHHHHH
Q 004730 237 RAKAAVSKNCRALIS 251 (733)
Q Consensus 237 eAK~ALS~nPrsLL~ 251 (733)
+|.++++.||..++.
T Consensus 277 eAl~~aT~nPA~~lG 291 (325)
T cd01306 277 EAVALVSANPARAVG 291 (325)
T ss_pred HHHHHHhHHHHHHcC
Confidence 999999999988774
No 41
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=28.31 E-value=70 Score=33.87 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCceEEecCCCCCCCCCCHHHHHHHHHcCe-EEEEEecccccChHHHHHHHHHHHHHHhhc-CCCcEEEc
Q 004730 132 SAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGV-YFELTYSDLILDVQLRRQMISNAKLLVDWT-RGKNLILS 209 (733)
Q Consensus 132 kaFr~ACenldVDIISLD~s~RLPF~LKhklaraAIeRGV-~FEI~YSplI~Ds~sRrn~IsNar~LIRaT-KGKnIIIS 209 (733)
+.+...|.+..++.++-++. ...+..+.+-|+ ++-|--.++. |...|-.+. .|+|||||
T Consensus 59 ~~L~~~~~~~gi~f~stpfd--------~~s~d~l~~~~~~~~KIaS~dl~-----------n~~lL~~~A~tgkPvIlS 119 (241)
T PF03102_consen 59 KELFEYCKELGIDFFSTPFD--------EESVDFLEELGVPAYKIASGDLT-----------NLPLLEYIAKTGKPVILS 119 (241)
T ss_dssp HHHHHHHHHTT-EEEEEE-S--------HHHHHHHHHHT-SEEEE-GGGTT------------HHHHHHHHTT-S-EEEE
T ss_pred HHHHHHHHHcCCEEEECCCC--------HHHHHHHHHcCCCEEEecccccc-----------CHHHHHHHHHhCCcEEEE
Confidence 44556777888888876553 234555555565 4444433332 322333333 48999999
Q ss_pred cCCCCCCCCCCHHHHH
Q 004730 210 SGASSVTELRGPYDVA 225 (733)
Q Consensus 210 SGA~S~lELRSP~DVI 225 (733)
+|..+.-||+.-.+++
T Consensus 120 TG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 120 TGMSTLEEIERAVEVL 135 (241)
T ss_dssp -TT--HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9988877765554444
No 42
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=24.99 E-value=7e+02 Score=25.98 Aligned_cols=97 Identities=10% Similarity=0.025 Sum_probs=61.0
Q ss_pred EEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcC
Q 004730 123 LVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR 202 (733)
Q Consensus 123 IVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTK 202 (733)
++-+.+.+...+....+ ..+|+|++|... . +-..++.....++.+--...+.+..+.. ..+...++++++...
T Consensus 203 ~lH~cg~~~~~~~~l~~-~~~d~~~~d~~~-~----d~~~~~~~~~~~~~i~Ggv~~~~~~~~~-e~i~~~v~~~l~~~~ 275 (306)
T cd00465 203 VHHSCYDAADLLEEMIQ-LGVDVISFDMTV-N----EPKEAIEKVGEKKTLVGGVDPGYLPATD-EECIAKVEELVERLG 275 (306)
T ss_pred EEEECCCHHHHHHHHHH-hCcceEeccccc-C----CHHHHHHHhCCCEEEECCCCccccCCCH-HHHHHHHHHHHHHhC
Confidence 45556665566666544 689999999864 1 2223444455556666666665433333 667788888888765
Q ss_pred CCcEEEccCCCCCCCCCC-HHHHHHH
Q 004730 203 GKNLILSSGASSVTELRG-PYDVANL 227 (733)
Q Consensus 203 GKnIIISSGA~S~lELRS-P~DVINL 227 (733)
+ +.|+++|+.=...-+. |.-+.+|
T Consensus 276 ~-~~il~~~cgi~~~~~~~~enl~a~ 300 (306)
T cd00465 276 P-HYIINPDCGLGPDSDYKPEHLRAV 300 (306)
T ss_pred C-CeEEeCCCCCCCCCCCcHHHHHHH
Confidence 5 8999999875554333 4444444
No 43
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=24.49 E-value=72 Score=40.78 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=26.9
Q ss_pred CceeeecccCCCCCCCCcccchhhHHHHHHHHHHcCCcEEEE
Q 004730 1 MGFFDLNIPYVESPPSNATTHKNARVKIVIKAMELGYTGVAY 42 (733)
Q Consensus 1 MGFYDLNIpwp~~g~st~~~~~~~rlkLL~~A~eLGYsgVAI 42 (733)
|.|+||.+|-..+--.+. ..--+++.+|.++||.+|||
T Consensus 3 m~fvdLHvHT~yS~ldg~----~~~~elv~~A~e~G~~avAI 40 (1151)
T PRK06826 3 MSFVHLHVHTEYSLLDGS----ARIKDLIKRAKELGMDSIAI 40 (1151)
T ss_pred CcceeccccccCChhhhc----CCHHHHHHHHHHCCCCEEEE
Confidence 559999999764410011 11235889999999999999
No 44
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=23.96 E-value=3.8e+02 Score=30.07 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=68.6
Q ss_pred ccccEEEEecCCHH----HHHHHHhcCCCceEEecCCCCCCCCCCH-----HHHHHHHHcCeEEEEEecccccCh-HHHH
Q 004730 119 KTYDLVAVRPLNQS----AFDHACEKAEVDIISINFAEKLPFRLKL-----PMIKAAIERGVYFELTYSDLILDV-QLRR 188 (733)
Q Consensus 119 kkYDIVAVrP~SEk----aFr~ACenldVDIISLD~s~RLPF~LKh-----klaraAIeRGV~FEI~YSplI~Ds-~sRr 188 (733)
.+.=||.||-++.+ -+..+++ +-||++.-|... .+++ ...-.|+++|..|.+..+-....- ....
T Consensus 188 ~~~g~~~vH~g~~~~~l~~l~~~~~--~~di~~~~f~pt---h~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~~~~~ 262 (389)
T TIGR01975 188 GKPGIVNFHVGDSKRALQPIYELVE--NTDVPITQFLPT---HINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRKEGEV 262 (389)
T ss_pred CCCcEEEEEeCCchhhHHHHHHHHH--hcCCChhheecC---ccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchhcccc
Confidence 47888999966543 2222333 457777555433 3432 345568899999999954222100 0000
Q ss_pred HHHHHHHHHHhhcCCC---cEEEccCCCC---CCCC---------C---C-HHHHHHHHHHhCCCHHHHHHHHHHhHHHH
Q 004730 189 QMISNAKLLVDWTRGK---NLILSSGASS---VTEL---------R---G-PYDVANLSSLLGISMERAKAAVSKNCRAL 249 (733)
Q Consensus 189 n~IsNar~LIRaTKGK---nIIISSGA~S---~lEL---------R---S-P~DVINLl~LfGLseeeAK~ALS~nPrsL 249 (733)
.-...++.+++. |. +|.+||-+.- .++. - + +..+..+....||+.++|.++++.||..+
T Consensus 263 ~~~~~~~~~~~~--Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~ 340 (389)
T TIGR01975 263 APAEGIKKALEA--GVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGV 340 (389)
T ss_pred ChHHHHHHHHHc--CCCcceEEEEeCCCCCCCccccccccccCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 011122233322 43 4689995531 1111 0 1 22333344444599999999999999888
Q ss_pred HH
Q 004730 250 IS 251 (733)
Q Consensus 250 L~ 251 (733)
+.
T Consensus 341 Lg 342 (389)
T TIGR01975 341 LN 342 (389)
T ss_pred hC
Confidence 74
No 45
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=23.13 E-value=2.3e+02 Score=30.21 Aligned_cols=84 Identities=11% Similarity=0.098 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHhCCCHHHHH
Q 004730 160 LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK 239 (733)
Q Consensus 160 hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~LfGLseeeAK 239 (733)
...++...++|+.+|+|-..-+.-+.....-...++.++ ..|.+|.|+|.....+.-.-..+..-+...+||+.++-+
T Consensus 223 ~~~i~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~--~~Gv~v~igTD~~~~~~~~l~~e~~~a~~~~~l~~~el~ 300 (324)
T TIGR01430 223 PELLKRLAQENITLEVCPTSNVALGVVKSLAEHPLRRFL--EAGVKVTLNSDDPAYFGSYLTEEYEIAAKHAGLTEEELK 300 (324)
T ss_pred HHHHHHHHHcCceEEECCcccccccccCCcccChHHHHH--HCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHH
Confidence 347888899999999998765432200000011233333 458899999976555544334444545567899998855
Q ss_pred HHHHHhH
Q 004730 240 AAVSKNC 246 (733)
Q Consensus 240 ~ALS~nP 246 (733)
+++.|.
T Consensus 301 -~~~~na 306 (324)
T TIGR01430 301 -QLARNA 306 (324)
T ss_pred -HHHHHH
Confidence 444544
No 46
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=22.07 E-value=3.8e+02 Score=28.64 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCCCCCCHHHHHHHHHHh------
Q 004730 158 LKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLL------ 231 (733)
Q Consensus 158 LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~lELRSP~DVINLl~Lf------ 231 (733)
+....++.+.++|+.+++|-..-..-+ ..+..++.+++ .|.++.++|.+.....-.+|..-+.++.++
T Consensus 254 l~~~~~~~l~~~gi~~~~~p~~~~~~~----~~~~~~~~~~~--~Gv~~~~GsD~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (411)
T cd01298 254 LTDEEIELLAETGTGVAHNPASNMKLA----SGIAPVPEMLE--AGVNVGLGTDGAASNNNLDMFEEMRLAALLQKLAHG 327 (411)
T ss_pred CCHHHHHHHHHcCCeEEEChHHhhhhh----hCCCCHHHHHH--CCCcEEEeCCCCccCCCcCHHHHHHHHHHHhccccC
Confidence 445678889999999887754211100 11223333332 478889988765444334566555554433
Q ss_pred ---CCCHHHHHHHHHHhHHHHHH
Q 004730 232 ---GISMERAKAAVSKNCRALIS 251 (733)
Q Consensus 232 ---GLseeeAK~ALS~nPrsLL~ 251 (733)
+++..+|.++.+.+|..++.
T Consensus 328 ~~~~~~~~~al~~~T~~~A~~lg 350 (411)
T cd01298 328 DPTALPAEEALEMATIGGAKALG 350 (411)
T ss_pred CCCcCCHHHHHHHHHhhHHHHhC
Confidence 68999999999999976653
No 47
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.59 E-value=1.4e+02 Score=33.19 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 004730 26 VKIVIKAMELGYTGVAYNR 44 (733)
Q Consensus 26 lkLL~~A~eLGYsgVAIN~ 44 (733)
.+++..|.+-|-++|=|=.
T Consensus 19 ~~lI~~A~~aGadaVKfQt 37 (329)
T TIGR03569 19 KKLVDAAAEAGADAVKFQT 37 (329)
T ss_pred HHHHHHHHHhCCCEEEeee
Confidence 4689999999988776633
No 48
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=21.43 E-value=5.2e+02 Score=28.09 Aligned_cols=89 Identities=9% Similarity=0.156 Sum_probs=61.4
Q ss_pred ccEEEEecCCHHHHHHHHhcCCCceEEecCCCCCCCCCCHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhh
Q 004730 121 YDLVAVRPLNQSAFDHACEKAEVDIISINFAEKLPFRLKLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDW 200 (733)
Q Consensus 121 YDIVAVrP~SEkaFr~ACenldVDIISLD~s~RLPF~LKhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRa 200 (733)
+.|+-+...+...+..-+ +..+|+|++|... ...-++..+...+.+==++.|.+.-+ ....+...++++++.
T Consensus 240 ~~ilh~cg~~~~~~~~~~-~~~~~~is~d~~~------dl~~~k~~~g~~~~i~Gni~p~ll~g-t~e~i~~~~~~~i~~ 311 (346)
T PRK00115 240 VPVILFGKGAGELLEAMA-ETGADVVGLDWTV------DLAEARRRVGDKKALQGNLDPAVLLA-PPEAIEEEVRAILDG 311 (346)
T ss_pred CCEEEEcCCcHHHHHHHH-hcCCCEEeeCCCC------CHHHHHHHcCCCeEEEeCCChhHhcC-CHHHHHHHHHHHHHH
Confidence 457777778877777744 4688999998752 33456666665566555556544333 256677888899987
Q ss_pred cCCCcEEEccCCCCCCC
Q 004730 201 TRGKNLILSSGASSVTE 217 (733)
Q Consensus 201 TKGKnIIISSGA~S~lE 217 (733)
..+++.|+++|..=+.+
T Consensus 312 ~~~~gfIl~~Gc~i~~~ 328 (346)
T PRK00115 312 GGGPGHIFNLGHGILPE 328 (346)
T ss_pred hCCCCeeeecCCcCCCC
Confidence 78889999999865543
No 49
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=20.72 E-value=5.9e+02 Score=27.84 Aligned_cols=82 Identities=27% Similarity=0.378 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCC-cEEEccCCCCCCCCCCH-HHH---HHHHHHhCCC
Q 004730 160 LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGK-NLILSSGASSVTELRGP-YDV---ANLSSLLGIS 234 (733)
Q Consensus 160 hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGK-nIIISSGA~S~lELRSP-~DV---INLl~LfGLs 234 (733)
...+..+.++|+.|.+.-. ..+.+ +..++.++ .+|. ++.|+|..........| .++ +..+.-.|++
T Consensus 232 ~~~~~~~~~~G~~~~~~~g------~s~~~-~~~~~~~l--~~G~~~~~lgTD~~~~~~~~~~~~~l~~~~~~~~~~~~~ 302 (379)
T PRK12394 232 LAEVRQARERGVIFDAANG------RSHFD-MNVARRAI--ANGFLPDIISSDLSTITKLAWPVYSLPWVLSKYLALGMA 302 (379)
T ss_pred hHHHHHHHhCCeEEEecCC------ccccc-hHHHHHHH--HCCCCceEEECCCCCCCcccCccchHHHHHHHHHHcCCC
Confidence 4577889999998766553 11111 12223333 4564 77888866554433333 333 3333456999
Q ss_pred HHHHHHHHHHhHHHHH
Q 004730 235 MERAKAAVSKNCRALI 250 (733)
Q Consensus 235 eeeAK~ALS~nPrsLL 250 (733)
.+++.++.+.||..++
T Consensus 303 ~~~~~~~at~~~a~~~ 318 (379)
T PRK12394 303 LEDVINACTHTPAVLM 318 (379)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998776
No 50
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=20.70 E-value=6.3e+02 Score=26.68 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=56.7
Q ss_pred CHHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCCCcEEEccCCCCCC--CCCC----HH----HHHHHH
Q 004730 159 KLPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVT--ELRG----PY----DVANLS 228 (733)
Q Consensus 159 KhklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKGKnIIISSGA~S~l--ELRS----P~----DVINLl 228 (733)
....++.+++.|.+ |+++..+.-... ...+.+++..+--.|++=|.+.-.. -.|+ |. -+..++
T Consensus 162 ~~~~a~~~l~~G~~--iS~~g~it~~~~-----~~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia 234 (258)
T PRK11449 162 SLQQAERFVQLGYK--IGVGGTITYPRA-----SKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLC 234 (258)
T ss_pred CHHHHHHHHHCCCE--EEeCccccccCc-----HHHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHH
Confidence 35789999999998 566766532111 1335666677767788877775311 0122 33 334447
Q ss_pred HHhCCCHHHHHHHHHHhHHHHH
Q 004730 229 SLLGISMERAKAAVSKNCRALI 250 (733)
Q Consensus 229 ~LfGLseeeAK~ALS~nPrsLL 250 (733)
.+.|++.++..+.+..|.+.++
T Consensus 235 ~l~~~~~~el~~~~~~N~~~lf 256 (258)
T PRK11449 235 ELRPEPADEIAEVLLNNTYTLF 256 (258)
T ss_pred HHHCcCHHHHHHHHHHHHHHHh
Confidence 8889999999999999988765
No 51
>PRK09237 dihydroorotase; Provisional
Probab=20.33 E-value=5.7e+02 Score=27.76 Aligned_cols=83 Identities=23% Similarity=0.285 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCeEEEEEecccccChHHHHHHHHHHHHHHhhcCC-CcEEEccCCCCCCCCCC----HHHHHHHHHHhCCC
Q 004730 160 LPMIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRG-KNLILSSGASSVTELRG----PYDVANLSSLLGIS 234 (733)
Q Consensus 160 hklaraAIeRGV~FEI~YSplI~Ds~sRrn~IsNar~LIRaTKG-KnIIISSGA~S~lELRS----P~DVINLl~LfGLs 234 (733)
...++.++++|++|.|..+....+ +.+++.++. .| .+..+++.......+.. ...++..+...|++
T Consensus 227 ~~~a~~~l~~G~~~~ig~g~~~~~-------~~~~~~l~~--~g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~~~~g~~ 297 (380)
T PRK09237 227 RPSVLEALERGVRLDVGHGTASFS-------FKVAEAAIA--AGILPDTISTDIYCRNRINGPVYSLATVMSKFLALGMP 297 (380)
T ss_pred hHHHHHHHHCCEEEEecCCCCccc-------HHHHHHHHH--CCCCceEEECCCCCCCcccchHhHHHHHHHHHHHhCCC
Confidence 367888999999999876543222 123334432 23 23467775322111112 23334444447999
Q ss_pred HHHHHHHHHHhHHHHHH
Q 004730 235 MERAKAAVSKNCRALIS 251 (733)
Q Consensus 235 eeeAK~ALS~nPrsLL~ 251 (733)
.+++.+..+.||..++.
T Consensus 298 ~~~al~~aT~n~A~~lg 314 (380)
T PRK09237 298 LEEVIAAVTKNAADALR 314 (380)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999987763
Done!