Query 004733
Match_columns 733
No_of_seqs 595 out of 3943
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 11:59:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.9E-96 6E-101 818.5 77.5 678 18-732 48-732 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.3E-79 2.8E-84 684.8 67.4 598 17-627 117-728 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3E-69 6.6E-74 586.9 56.9 478 254-732 85-569 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.4E-64 3.1E-69 550.1 58.0 522 92-657 370-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.6E-63 3.4E-68 541.9 55.0 526 15-590 364-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-63 2.9E-68 542.7 54.3 468 151-624 84-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-37 6.6E-42 355.3 77.3 690 16-723 120-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-37 7.9E-42 354.7 77.8 686 18-719 156-899 (899)
9 PRK11447 cellulose synthase su 100.0 7.5E-26 1.6E-30 259.2 70.3 629 22-719 29-739 (1157)
10 PRK11447 cellulose synthase su 100.0 6.1E-25 1.3E-29 251.7 63.1 599 16-685 57-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 6.3E-23 1.4E-27 223.6 61.7 258 451-719 476-739 (987)
12 PRK09782 bacteriophage N4 rece 99.9 3.6E-21 7.8E-26 209.9 61.2 556 106-722 58-708 (987)
13 KOG2002 TPR-containing nuclear 99.9 4.5E-18 9.7E-23 173.2 52.5 654 22-723 42-801 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 1.2E-19 2.7E-24 174.8 35.6 442 157-709 51-508 (966)
15 KOG2002 TPR-containing nuclear 99.9 8.4E-17 1.8E-21 164.1 52.9 632 35-722 25-747 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.4E-18 9.6E-23 183.4 44.7 250 466-721 308-572 (615)
17 PRK11788 tetratricopeptide rep 99.9 1.6E-19 3.4E-24 185.1 29.9 295 429-728 43-355 (389)
18 KOG4626 O-linked N-acetylgluco 99.9 2.9E-18 6.3E-23 165.5 33.6 358 323-722 116-487 (966)
19 KOG4318 Bicoid mRNA stability 99.8 3.2E-17 7E-22 164.9 39.0 656 36-725 5-813 (1088)
20 PRK10049 pgaA outer membrane p 99.8 1.9E-16 4.1E-21 173.8 46.3 402 220-722 12-458 (765)
21 PRK15174 Vi polysaccharide exp 99.8 3.5E-17 7.6E-22 175.4 39.4 258 425-690 114-385 (656)
22 PRK11788 tetratricopeptide rep 99.8 1.3E-17 2.9E-22 170.8 31.4 300 231-626 43-354 (389)
23 PRK15174 Vi polysaccharide exp 99.8 7.2E-17 1.6E-21 173.0 37.5 348 335-723 17-384 (656)
24 KOG2003 TPR repeat-containing 99.8 1.1E-16 2.4E-21 148.9 31.2 484 159-707 206-710 (840)
25 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-15 3.5E-20 163.6 45.4 423 156-692 129-577 (615)
26 PRK10049 pgaA outer membrane p 99.8 4.3E-16 9.3E-21 171.0 40.8 402 192-695 18-465 (765)
27 KOG2076 RNA polymerase III tra 99.8 1.5E-13 3.2E-18 139.9 52.9 589 98-722 145-851 (895)
28 PRK14574 hmsH outer membrane p 99.8 7.9E-15 1.7E-19 157.4 45.9 433 190-693 36-520 (822)
29 PRK14574 hmsH outer membrane p 99.8 1.3E-14 2.9E-19 155.6 47.4 423 232-723 43-516 (822)
30 KOG2076 RNA polymerase III tra 99.8 1.9E-13 4.1E-18 139.1 51.1 633 19-716 137-891 (895)
31 KOG4422 Uncharacterized conser 99.8 7.3E-15 1.6E-19 136.1 36.7 316 59-419 118-466 (625)
32 KOG0495 HAT repeat protein [RN 99.8 1.1E-11 2.3E-16 121.7 56.2 505 174-731 366-889 (913)
33 KOG4422 Uncharacterized conser 99.7 1.7E-13 3.6E-18 127.2 37.9 440 154-652 116-588 (625)
34 KOG0495 HAT repeat protein [RN 99.7 7.8E-11 1.7E-15 115.7 53.1 539 169-730 266-856 (913)
35 PF13429 TPR_15: Tetratricopep 99.7 4.2E-16 9.1E-21 150.6 12.3 217 498-719 55-276 (280)
36 KOG4318 Bicoid mRNA stability 99.6 3.2E-12 7E-17 129.6 36.1 523 175-724 11-598 (1088)
37 KOG0547 Translocase of outer m 99.6 4.8E-12 1E-16 119.9 32.5 188 525-718 363-564 (606)
38 KOG2003 TPR repeat-containing 99.6 6.6E-12 1.4E-16 117.5 30.4 442 222-721 200-690 (840)
39 KOG1155 Anaphase-promoting com 99.6 2.4E-11 5.2E-16 114.5 31.7 341 330-718 171-534 (559)
40 PRK10747 putative protoheme IX 99.6 7.4E-12 1.6E-16 126.6 30.1 275 434-719 97-389 (398)
41 KOG1126 DNA-binding cell divis 99.6 7.2E-13 1.6E-17 130.8 21.7 278 436-723 334-623 (638)
42 KOG1915 Cell cycle control pro 99.5 3.2E-09 7E-14 100.6 43.8 232 450-685 320-584 (677)
43 KOG4162 Predicted calmodulin-b 99.5 3.5E-08 7.6E-13 99.8 52.6 406 312-730 312-792 (799)
44 KOG1915 Cell cycle control pro 99.5 2.1E-10 4.5E-15 108.5 32.4 396 327-730 77-510 (677)
45 PRK10747 putative protoheme IX 99.5 2.9E-11 6.2E-16 122.4 29.2 285 336-687 97-391 (398)
46 KOG1155 Anaphase-promoting com 99.5 8.3E-10 1.8E-14 104.4 35.5 254 460-719 235-494 (559)
47 COG2956 Predicted N-acetylgluc 99.5 6.9E-11 1.5E-15 106.3 26.7 291 365-728 46-355 (389)
48 TIGR00540 hemY_coli hemY prote 99.5 5.8E-11 1.3E-15 121.0 30.3 281 432-719 95-398 (409)
49 TIGR00540 hemY_coli hemY prote 99.5 1.9E-10 4.1E-15 117.2 32.6 284 365-685 95-398 (409)
50 KOG1126 DNA-binding cell divis 99.5 5.2E-12 1.1E-16 124.8 20.1 248 467-722 334-588 (638)
51 KOG1173 Anaphase-promoting com 99.5 7.2E-10 1.6E-14 107.6 33.7 194 521-719 311-517 (611)
52 PF13429 TPR_15: Tetratricopep 99.5 4.6E-13 9.9E-18 129.5 11.9 252 426-686 13-277 (280)
53 TIGR02521 type_IV_pilW type IV 99.4 4.5E-11 9.7E-16 113.2 23.7 198 521-720 30-232 (234)
54 KOG3785 Uncharacterized conser 99.4 2.5E-08 5.4E-13 91.1 38.1 225 1-235 1-231 (557)
55 KOG2047 mRNA splicing factor [ 99.4 4.2E-07 9.2E-12 90.0 51.3 609 14-647 20-716 (835)
56 COG3071 HemY Uncharacterized e 99.4 8.6E-10 1.9E-14 102.7 28.7 204 159-388 87-297 (400)
57 KOG2376 Signal recognition par 99.4 2E-08 4.3E-13 98.3 37.7 437 229-715 18-515 (652)
58 KOG2047 mRNA splicing factor [ 99.4 6.7E-07 1.5E-11 88.7 52.7 598 54-714 40-717 (835)
59 KOG3616 Selective LIM binding 99.4 3.4E-07 7.4E-12 91.8 46.3 192 29-249 740-934 (1636)
60 KOG0985 Vesicle coat protein c 99.4 1.6E-06 3.4E-11 90.4 53.6 654 22-717 361-1246(1666)
61 COG3071 HemY Uncharacterized e 99.3 8.1E-09 1.8E-13 96.4 30.6 286 367-718 97-388 (400)
62 KOG0985 Vesicle coat protein c 99.3 3.5E-06 7.6E-11 87.9 50.3 233 452-715 1104-1336(1666)
63 KOG1129 TPR repeat-containing 99.3 2.2E-10 4.8E-15 103.1 16.3 225 456-721 227-459 (478)
64 COG3063 PilF Tfp pilus assembl 99.3 3.2E-10 6.9E-15 97.4 16.5 157 559-721 41-203 (250)
65 KOG4162 Predicted calmodulin-b 99.3 1.2E-07 2.6E-12 96.1 37.2 479 166-692 239-789 (799)
66 COG2956 Predicted N-acetylgluc 99.3 1.5E-08 3.3E-13 91.6 27.6 270 167-500 48-328 (389)
67 KOG1156 N-terminal acetyltrans 99.3 4.6E-07 9.9E-12 90.1 40.2 456 195-717 14-508 (700)
68 KOG0547 Translocase of outer m 99.3 5.4E-08 1.2E-12 93.1 32.6 427 157-691 118-571 (606)
69 KOG1156 N-terminal acetyltrans 99.3 3E-06 6.6E-11 84.5 47.8 567 99-722 48-690 (700)
70 KOG3616 Selective LIM binding 99.3 6.5E-07 1.4E-11 89.9 41.2 256 431-721 742-1025(1636)
71 KOG1174 Anaphase-promoting com 99.3 2.2E-07 4.7E-12 87.0 34.9 267 449-724 229-504 (564)
72 KOG2376 Signal recognition par 99.2 5.4E-07 1.2E-11 88.6 38.9 278 330-615 182-517 (652)
73 KOG1173 Anaphase-promoting com 99.2 1.3E-07 2.7E-12 92.5 34.1 474 18-598 13-531 (611)
74 KOG3617 WD40 and TPR repeat-co 99.2 3.9E-06 8.5E-11 85.7 44.7 239 30-302 737-1004(1416)
75 TIGR02521 type_IV_pilW type IV 99.2 1.7E-09 3.6E-14 102.4 19.5 164 553-720 31-198 (234)
76 PRK11189 lipoprotein NlpI; Pro 99.2 3.5E-09 7.5E-14 102.5 21.7 189 525-721 67-266 (296)
77 KOG1840 Kinesin light chain [C 99.2 1.1E-08 2.4E-13 102.9 25.6 232 488-719 200-478 (508)
78 PRK12370 invasion protein regu 99.2 6E-09 1.3E-13 110.6 25.2 212 501-721 318-536 (553)
79 KOG3785 Uncharacterized conser 99.2 2.4E-07 5.3E-12 84.9 31.0 180 161-382 29-213 (557)
80 KOG1174 Anaphase-promoting com 99.2 8.8E-07 1.9E-11 83.1 34.5 271 420-697 231-511 (564)
81 PF13041 PPR_2: PPR repeat fam 99.2 9.3E-11 2E-15 78.3 6.4 50 450-499 1-50 (50)
82 PF13041 PPR_2: PPR repeat fam 99.1 1.6E-10 3.4E-15 77.1 6.6 50 551-601 1-50 (50)
83 PRK12370 invasion protein regu 99.1 8.1E-09 1.8E-13 109.6 22.6 178 535-720 317-502 (553)
84 KOG1129 TPR repeat-containing 99.1 1.9E-09 4.1E-14 97.2 14.8 235 425-698 227-470 (478)
85 COG3063 PilF Tfp pilus assembl 99.1 2.6E-08 5.7E-13 85.9 20.6 192 526-720 39-236 (250)
86 PF12569 NARP1: NMDA receptor- 99.1 1.2E-06 2.6E-11 89.7 36.4 290 230-548 11-331 (517)
87 PF12569 NARP1: NMDA receptor- 99.0 3.6E-07 7.7E-12 93.5 28.2 285 428-719 11-333 (517)
88 KOG0548 Molecular co-chaperone 99.0 4.2E-07 9.1E-12 88.5 26.0 241 425-704 228-473 (539)
89 KOG1127 TPR repeat-containing 99.0 8E-06 1.7E-10 85.5 35.5 174 108-284 474-658 (1238)
90 KOG3617 WD40 and TPR repeat-co 99.0 6.3E-06 1.4E-10 84.2 33.5 408 121-615 724-1171(1416)
91 PRK11189 lipoprotein NlpI; Pro 98.9 4.9E-07 1.1E-11 87.6 24.8 225 467-700 41-280 (296)
92 KOG1127 TPR repeat-containing 98.9 0.00011 2.4E-09 77.4 41.4 178 34-217 471-659 (1238)
93 KOG1840 Kinesin light chain [C 98.9 2.1E-07 4.6E-12 93.8 21.7 163 523-685 284-478 (508)
94 PF04733 Coatomer_E: Coatomer 98.9 4.3E-08 9.3E-13 93.1 15.5 253 428-692 8-271 (290)
95 KOG0624 dsRNA-activated protei 98.9 7.1E-06 1.5E-10 75.2 28.1 292 425-723 42-373 (504)
96 TIGR03302 OM_YfiO outer membra 98.9 1.7E-07 3.6E-12 88.3 19.0 179 522-721 33-233 (235)
97 KOG4340 Uncharacterized conser 98.9 2.5E-06 5.3E-11 76.5 24.4 343 24-381 13-373 (459)
98 PF04733 Coatomer_E: Coatomer 98.9 1.8E-07 3.9E-12 88.9 18.8 225 425-659 39-271 (290)
99 KOG0548 Molecular co-chaperone 98.9 5.5E-07 1.2E-11 87.7 21.9 217 491-722 228-457 (539)
100 cd05804 StaR_like StaR_like; a 98.9 9.6E-06 2.1E-10 82.0 31.6 293 425-721 10-337 (355)
101 PRK10370 formate-dependent nit 98.8 2.9E-07 6.4E-12 82.5 16.1 120 602-723 52-176 (198)
102 KOG4340 Uncharacterized conser 98.7 2.8E-06 6.1E-11 76.2 20.0 285 423-716 12-335 (459)
103 PRK15359 type III secretion sy 98.7 3.6E-07 7.8E-12 77.4 13.4 119 574-700 14-135 (144)
104 PRK15359 type III secretion sy 98.7 4E-07 8.7E-12 77.1 13.1 109 609-722 13-123 (144)
105 KOG0624 dsRNA-activated protei 98.7 0.00012 2.7E-09 67.4 29.1 313 326-695 41-379 (504)
106 PRK04841 transcriptional regul 98.7 5.4E-05 1.2E-09 87.2 34.4 262 460-721 460-761 (903)
107 cd05804 StaR_like StaR_like; a 98.6 6E-05 1.3E-09 76.2 29.0 267 452-721 6-294 (355)
108 KOG1125 TPR repeat-containing 98.6 1.3E-06 2.9E-11 85.9 15.6 194 523-719 320-526 (579)
109 KOG1070 rRNA processing protei 98.6 4.2E-06 9.1E-11 90.5 20.4 198 521-723 1457-1666(1710)
110 COG5010 TadD Flp pilus assembl 98.6 9.8E-06 2.1E-10 72.1 18.3 155 557-715 70-226 (257)
111 PRK15363 pathogenicity island 98.6 7.4E-07 1.6E-11 73.6 10.7 97 625-721 35-133 (157)
112 COG5010 TadD Flp pilus assembl 98.6 4.8E-06 1E-10 74.0 16.2 135 586-722 63-199 (257)
113 KOG1128 Uncharacterized conser 98.6 3.9E-06 8.4E-11 85.0 17.6 214 488-720 399-616 (777)
114 COG4783 Putative Zn-dependent 98.5 2E-05 4.3E-10 76.5 20.9 119 601-721 318-455 (484)
115 KOG3060 Uncharacterized conser 98.5 1.9E-05 4.1E-10 69.6 18.7 161 557-722 56-222 (289)
116 TIGR02552 LcrH_SycD type III s 98.5 1.9E-06 4.1E-11 72.9 12.0 94 628-721 20-115 (135)
117 KOG1128 Uncharacterized conser 98.5 2.4E-05 5.2E-10 79.5 21.1 218 416-652 393-614 (777)
118 PRK10370 formate-dependent nit 98.5 1.7E-05 3.8E-10 71.1 18.2 154 529-695 23-182 (198)
119 TIGR03302 OM_YfiO outer membra 98.5 9.3E-06 2E-10 76.4 16.9 184 484-689 30-235 (235)
120 PLN02789 farnesyltranstransfer 98.5 1.8E-05 3.9E-10 76.4 18.8 202 497-703 47-267 (320)
121 KOG2053 Mitochondrial inherita 98.4 0.0036 7.8E-08 65.8 41.2 123 31-158 19-149 (932)
122 KOG3081 Vesicle coat complex C 98.4 0.00018 3.9E-09 64.1 22.8 251 430-692 17-277 (299)
123 KOG1914 mRNA cleavage and poly 98.4 0.0024 5.1E-08 63.2 38.3 176 468-646 347-531 (656)
124 PRK15179 Vi polysaccharide bio 98.4 3.6E-05 7.7E-10 82.3 22.0 136 552-693 85-224 (694)
125 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 8.6E-06 1.9E-10 80.1 16.0 123 591-718 171-295 (395)
126 PF12854 PPR_1: PPR repeat 98.4 4.1E-07 9E-12 54.1 4.2 33 517-549 2-34 (34)
127 KOG1070 rRNA processing protei 98.4 6.5E-05 1.4E-09 81.8 23.2 217 487-708 1458-1688(1710)
128 PLN02789 farnesyltranstransfer 98.4 0.00019 4.2E-09 69.4 24.6 208 455-669 40-267 (320)
129 COG4783 Putative Zn-dependent 98.4 4.4E-05 9.5E-10 74.2 19.5 136 532-687 316-455 (484)
130 KOG3060 Uncharacterized conser 98.4 2.9E-05 6.2E-10 68.5 16.4 153 567-721 26-184 (289)
131 PF12854 PPR_1: PPR repeat 98.4 6.7E-07 1.4E-11 53.2 4.2 33 318-350 2-34 (34)
132 PRK04841 transcriptional regul 98.4 0.0018 3.9E-08 74.8 35.5 289 431-720 384-720 (903)
133 TIGR02552 LcrH_SycD type III s 98.3 1.7E-05 3.7E-10 67.0 13.3 118 575-697 5-125 (135)
134 PRK15179 Vi polysaccharide bio 98.2 0.0004 8.7E-09 74.5 24.6 126 589-717 86-214 (694)
135 KOG1125 TPR repeat-containing 98.2 0.00011 2.3E-09 73.0 18.3 252 430-712 294-563 (579)
136 PF09976 TPR_21: Tetratricopep 98.2 4.2E-05 9E-10 65.2 13.9 115 602-717 24-144 (145)
137 KOG3081 Vesicle coat complex C 98.2 0.00044 9.5E-09 61.8 19.6 175 474-658 95-276 (299)
138 PF12895 Apc3: Anaphase-promot 98.2 2.3E-06 4.9E-11 64.9 4.6 78 638-716 2-83 (84)
139 PRK14720 transcript cleavage f 98.2 0.00048 1E-08 74.6 23.2 232 421-702 31-268 (906)
140 PF13432 TPR_16: Tetratricopep 98.2 7.5E-06 1.6E-10 58.5 6.6 60 663-722 3-62 (65)
141 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.1E-05 6.8E-10 63.7 11.4 96 627-722 4-107 (119)
142 PRK14720 transcript cleavage f 98.1 0.00046 1E-08 74.8 22.0 130 490-635 119-267 (906)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.1E-05 2E-09 73.0 15.5 123 525-652 172-295 (395)
144 PF13414 TPR_11: TPR repeat; P 98.1 9.1E-06 2E-10 58.9 6.5 65 656-720 2-67 (69)
145 KOG2053 Mitochondrial inherita 98.1 0.02 4.3E-07 60.6 41.6 160 555-718 438-606 (932)
146 cd00189 TPR Tetratricopeptide 98.1 3.8E-05 8.1E-10 60.3 10.4 94 628-721 3-98 (100)
147 KOG2041 WD40 repeat protein [G 98.1 0.0049 1.1E-07 62.8 26.6 141 107-281 678-821 (1189)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00018 4E-09 61.2 15.1 124 556-684 15-145 (145)
149 COG4235 Cytochrome c biogenesi 98.0 0.00013 2.9E-09 67.0 13.3 108 622-729 153-265 (287)
150 PLN03088 SGT1, suppressor of 98.0 3.5E-05 7.7E-10 76.5 10.2 107 595-704 8-117 (356)
151 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.5E-10 48.9 4.1 35 155-189 1-35 (35)
152 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3.1E-10 48.5 4.4 35 257-291 1-35 (35)
153 KOG2041 WD40 repeat protein [G 97.9 0.026 5.6E-07 57.8 28.5 30 220-249 689-718 (1189)
154 COG3898 Uncharacterized membra 97.9 0.021 4.5E-07 54.3 27.7 283 425-720 86-392 (531)
155 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.6E-10 47.7 4.1 33 155-187 2-34 (34)
156 PF05843 Suf: Suppressor of fo 97.9 0.00036 7.8E-09 66.8 15.0 138 554-695 2-145 (280)
157 PRK15331 chaperone protein Sic 97.9 0.00024 5.1E-09 59.3 11.8 90 630-719 42-133 (165)
158 PF14559 TPR_19: Tetratricopep 97.9 1.9E-05 4E-10 57.1 4.8 55 668-722 2-56 (68)
159 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00025 5.5E-09 58.2 12.0 105 591-695 4-114 (119)
160 PF13812 PPR_3: Pentatricopept 97.9 2.4E-05 5.2E-10 47.0 4.2 33 257-289 2-34 (34)
161 KOG0553 TPR repeat-containing 97.8 6.8E-05 1.5E-09 68.3 8.1 109 597-708 89-200 (304)
162 KOG0553 TPR repeat-containing 97.8 0.00018 4E-09 65.6 10.8 101 561-667 89-192 (304)
163 PF13371 TPR_9: Tetratricopept 97.8 6.8E-05 1.5E-09 55.0 6.8 59 664-722 2-60 (73)
164 COG4700 Uncharacterized protei 97.8 0.0028 6.1E-08 53.3 15.9 151 565-720 68-222 (251)
165 PRK02603 photosystem I assembl 97.8 0.00032 6.9E-09 61.9 11.5 94 628-721 38-150 (172)
166 PLN03088 SGT1, suppressor of 97.8 0.00045 9.7E-09 68.7 13.4 100 560-664 9-110 (356)
167 KOG1914 mRNA cleavage and poly 97.8 0.057 1.2E-06 53.9 39.2 174 538-715 347-534 (656)
168 KOG1538 Uncharacterized conser 97.7 0.014 3.1E-07 59.0 22.5 71 322-392 555-638 (1081)
169 CHL00033 ycf3 photosystem I as 97.7 0.00039 8.4E-09 61.1 10.5 91 625-715 35-137 (168)
170 PRK10153 DNA-binding transcrip 97.7 0.0014 3E-08 68.1 15.7 63 659-722 422-484 (517)
171 PRK10866 outer membrane biogen 97.7 0.009 1.9E-07 55.7 19.5 56 663-718 181-239 (243)
172 PF14559 TPR_19: Tetratricopep 97.6 0.00011 2.4E-09 53.0 5.2 64 636-699 2-67 (68)
173 PF13432 TPR_16: Tetratricopep 97.6 0.00017 3.7E-09 51.4 5.8 61 631-691 3-65 (65)
174 PRK10803 tol-pal system protei 97.6 0.0006 1.3E-08 63.8 10.8 63 659-721 182-247 (263)
175 cd00189 TPR Tetratricopeptide 97.6 0.00066 1.4E-08 53.0 9.9 88 558-649 5-92 (100)
176 PF07079 DUF1347: Protein of u 97.6 0.086 1.9E-06 51.5 37.7 57 564-629 473-529 (549)
177 PRK10153 DNA-binding transcrip 97.6 0.0023 5E-08 66.6 16.0 140 550-692 334-488 (517)
178 KOG0550 Molecular chaperone (D 97.5 0.0025 5.4E-08 60.8 13.8 156 561-723 177-353 (486)
179 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 42.9 3.4 31 155-185 1-31 (31)
180 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.9E-09 42.6 3.6 31 257-287 1-31 (31)
181 PF07079 DUF1347: Protein of u 97.5 0.11 2.3E-06 50.9 35.9 58 659-717 462-521 (549)
182 CHL00033 ycf3 photosystem I as 97.5 0.0046 9.9E-08 54.3 14.7 109 554-691 36-154 (168)
183 PRK02603 photosystem I assembl 97.5 0.0032 7E-08 55.5 13.7 129 553-706 35-166 (172)
184 PF12895 Apc3: Anaphase-promot 97.5 0.00031 6.6E-09 53.2 6.2 81 566-650 2-83 (84)
185 PF13431 TPR_17: Tetratricopep 97.5 8.7E-05 1.9E-09 44.0 2.5 33 680-712 2-34 (34)
186 PF04840 Vps16_C: Vps16, C-ter 97.4 0.13 2.8E-06 50.0 28.5 107 423-545 179-285 (319)
187 PF12688 TPR_5: Tetratrico pep 97.4 0.0019 4E-08 51.9 9.9 86 632-717 8-101 (120)
188 COG4700 Uncharacterized protei 97.4 0.0049 1.1E-07 52.0 11.9 102 620-721 84-190 (251)
189 PF08579 RPM2: Mitochondrial r 97.4 0.0029 6.3E-08 48.6 9.7 80 156-235 27-116 (120)
190 PF05843 Suf: Suppressor of fo 97.3 0.003 6.4E-08 60.5 12.4 129 590-720 2-136 (280)
191 PF10037 MRP-S27: Mitochondria 97.3 0.0034 7.5E-08 62.4 12.7 118 184-301 61-183 (429)
192 PF14938 SNAP: Soluble NSF att 97.3 0.028 6.1E-07 54.2 18.7 113 528-652 100-223 (282)
193 PF13428 TPR_14: Tetratricopep 97.3 0.00059 1.3E-08 43.7 4.6 42 658-699 2-43 (44)
194 PF13414 TPR_11: TPR repeat; P 97.2 0.00088 1.9E-08 48.4 5.8 64 625-688 3-69 (69)
195 PF13281 DUF4071: Domain of un 97.2 0.09 1.9E-06 51.4 20.8 161 527-691 146-339 (374)
196 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0017 3.7E-08 63.8 9.1 61 659-719 77-140 (453)
197 PRK15363 pathogenicity island 97.2 0.015 3.2E-07 48.6 13.1 91 556-651 38-129 (157)
198 PF08579 RPM2: Mitochondrial r 97.2 0.0042 9.2E-08 47.8 9.0 73 361-433 32-116 (120)
199 PF12688 TPR_5: Tetratrico pep 97.2 0.014 3E-07 47.0 12.4 88 559-650 7-100 (120)
200 PF06239 ECSIT: Evolutionarily 97.2 0.004 8.6E-08 54.5 9.9 96 143-238 34-153 (228)
201 PF10037 MRP-S27: Mitochondria 97.2 0.0046 9.9E-08 61.6 11.7 118 418-535 63-186 (429)
202 PRK10803 tol-pal system protei 97.2 0.0062 1.3E-07 57.2 12.0 98 592-692 146-252 (263)
203 PF13525 YfiO: Outer membrane 97.1 0.02 4.3E-07 52.0 14.9 50 663-712 147-199 (203)
204 KOG2796 Uncharacterized conser 97.1 0.026 5.7E-07 50.6 14.7 137 555-693 179-322 (366)
205 PF13371 TPR_9: Tetratricopept 97.1 0.0019 4.1E-08 47.2 6.8 66 633-698 3-70 (73)
206 PF13512 TPR_18: Tetratricopep 97.1 0.01 2.3E-07 48.5 11.2 91 632-722 17-130 (142)
207 PF04840 Vps16_C: Vps16, C-ter 97.1 0.3 6.5E-06 47.4 29.3 103 559-680 183-285 (319)
208 PF03704 BTAD: Bacterial trans 97.1 0.015 3.2E-07 49.7 12.8 116 599-726 16-136 (146)
209 PF14938 SNAP: Soluble NSF att 97.0 0.014 3.1E-07 56.2 13.5 92 628-719 117-224 (282)
210 KOG2796 Uncharacterized conser 97.0 0.16 3.5E-06 45.8 18.3 172 125-298 138-326 (366)
211 PF06239 ECSIT: Evolutionarily 97.0 0.01 2.2E-07 52.1 10.4 89 550-640 44-153 (228)
212 PF13424 TPR_12: Tetratricopep 97.0 0.0017 3.7E-08 48.2 5.2 61 659-719 7-74 (78)
213 KOG1538 Uncharacterized conser 96.9 0.078 1.7E-06 54.0 16.9 25 425-449 777-801 (1081)
214 PRK10866 outer membrane biogen 96.8 0.38 8.3E-06 44.9 20.8 60 455-516 35-98 (243)
215 KOG0543 FKBP-type peptidyl-pro 96.8 0.021 4.5E-07 55.1 12.2 94 627-720 259-355 (397)
216 KOG1130 Predicted G-alpha GTPa 96.8 0.0082 1.8E-07 57.3 9.4 130 590-719 196-343 (639)
217 KOG0550 Molecular chaperone (D 96.7 0.082 1.8E-06 51.0 15.3 163 529-699 176-362 (486)
218 COG4105 ComL DNA uptake lipopr 96.7 0.26 5.6E-06 44.9 17.5 58 662-719 172-232 (254)
219 COG4235 Cytochrome c biogenesi 96.7 0.057 1.2E-06 50.2 13.7 104 586-691 153-261 (287)
220 KOG4555 TPR repeat-containing 96.7 0.02 4.3E-07 45.2 9.0 87 634-720 52-144 (175)
221 PRK11906 transcriptional regul 96.7 0.032 6.9E-07 55.3 12.6 145 568-715 273-431 (458)
222 KOG0543 FKBP-type peptidyl-pro 96.6 0.0097 2.1E-07 57.3 8.5 67 657-723 257-323 (397)
223 COG3118 Thioredoxin domain-con 96.5 0.16 3.5E-06 47.0 15.1 119 598-719 143-264 (304)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1 2.2E-05 44.3 30.3 140 488-633 398-543 (660)
225 COG1729 Uncharacterized protei 96.4 0.02 4.4E-07 52.3 9.0 62 661-722 182-246 (262)
226 PF09205 DUF1955: Domain of un 96.2 0.46 9.9E-06 38.0 14.4 140 564-723 13-152 (161)
227 PF10300 DUF3808: Protein of u 96.2 0.25 5.4E-06 51.3 16.8 161 556-719 191-375 (468)
228 PF13525 YfiO: Outer membrane 96.2 0.19 4.2E-06 45.6 14.3 142 559-721 11-171 (203)
229 KOG1585 Protein required for f 96.2 0.74 1.6E-05 41.3 16.8 111 603-714 124-250 (308)
230 PF03704 BTAD: Bacterial trans 96.2 0.043 9.4E-07 46.8 9.5 73 555-629 64-140 (146)
231 KOG2610 Uncharacterized conser 96.2 0.18 3.9E-06 47.2 13.4 159 565-727 115-283 (491)
232 COG3118 Thioredoxin domain-con 96.1 0.56 1.2E-05 43.6 16.1 170 540-712 121-293 (304)
233 COG0457 NrfG FOG: TPR repeat [ 96.0 1.4 3.1E-05 41.1 26.5 191 524-720 61-265 (291)
234 COG3898 Uncharacterized membra 95.9 1.8 3.9E-05 41.9 27.4 278 335-652 96-390 (531)
235 KOG2396 HAT (Half-A-TPR) repea 95.9 2.2 4.9E-05 42.8 30.1 106 540-649 446-554 (568)
236 PRK11619 lytic murein transgly 95.9 3.5 7.6E-05 44.8 32.8 76 425-502 103-178 (644)
237 KOG2280 Vacuolar assembly/sort 95.8 3.1 6.8E-05 44.0 32.9 111 324-477 685-795 (829)
238 PF13424 TPR_12: Tetratricopep 95.8 0.013 2.9E-07 43.4 4.0 27 659-685 48-74 (78)
239 COG5107 RNA14 Pre-mRNA 3'-end 95.7 2.5 5.4E-05 41.7 35.6 143 552-698 396-543 (660)
240 PF12921 ATP13: Mitochondrial 95.6 0.17 3.6E-06 41.3 10.0 97 522-635 2-98 (126)
241 KOG1130 Predicted G-alpha GTPa 95.6 0.033 7.2E-07 53.3 6.6 90 627-716 197-300 (639)
242 PF04184 ST7: ST7 protein; In 95.6 0.89 1.9E-05 45.6 16.3 101 593-693 263-382 (539)
243 KOG2114 Vacuolar assembly/sort 95.6 4.2 9.2E-05 43.7 28.4 148 126-281 337-488 (933)
244 PRK15331 chaperone protein Sic 95.5 0.33 7.1E-06 41.0 11.3 89 564-656 48-136 (165)
245 smart00299 CLH Clathrin heavy 95.5 1.3 2.8E-05 37.3 15.5 126 556-702 10-136 (140)
246 PRK11906 transcriptional regul 95.5 0.66 1.4E-05 46.4 15.1 143 537-685 273-435 (458)
247 PF13512 TPR_18: Tetratricopep 95.4 0.46 9.9E-06 39.2 11.6 116 562-693 19-135 (142)
248 KOG2610 Uncharacterized conser 95.3 0.24 5.2E-06 46.4 10.8 114 601-716 115-234 (491)
249 COG1729 Uncharacterized protei 95.3 0.33 7.2E-06 44.6 11.6 91 556-650 145-240 (262)
250 KOG2114 Vacuolar assembly/sort 95.3 5.4 0.00012 43.0 29.7 54 631-685 711-764 (933)
251 KOG1941 Acetylcholine receptor 95.3 0.36 7.7E-06 45.9 11.8 46 463-508 17-64 (518)
252 KOG1920 IkappaB kinase complex 95.3 6.7 0.00015 44.1 23.6 76 464-550 977-1054(1265)
253 KOG3941 Intermediate in Toll s 95.1 0.22 4.7E-06 45.5 9.6 98 141-238 52-173 (406)
254 PF07719 TPR_2: Tetratricopept 95.0 0.065 1.4E-06 31.7 4.4 27 693-719 3-29 (34)
255 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.23 5E-06 49.4 10.4 68 16-86 70-141 (453)
256 KOG4234 TPR repeat-containing 94.9 0.1 2.2E-06 44.9 6.6 102 597-700 103-211 (271)
257 KOG2066 Vacuolar assembly/sort 94.8 6.7 0.00015 41.9 23.4 71 595-677 640-710 (846)
258 KOG3941 Intermediate in Toll s 94.7 0.32 7E-06 44.4 9.7 109 542-652 54-186 (406)
259 KOG4555 TPR repeat-containing 94.6 0.12 2.6E-06 41.0 6.0 56 665-720 51-106 (175)
260 COG4785 NlpI Lipoprotein NlpI, 94.6 1.2 2.7E-05 39.2 12.5 157 553-719 99-265 (297)
261 PF02259 FAT: FAT domain; Int 94.6 5.2 0.00011 40.2 19.8 149 552-704 145-305 (352)
262 KOG1258 mRNA processing protei 94.6 6.7 0.00015 40.6 31.3 181 521-705 296-489 (577)
263 PF13428 TPR_14: Tetratricopep 94.5 0.087 1.9E-06 33.5 4.4 33 691-723 1-33 (44)
264 PF04053 Coatomer_WDAD: Coatom 94.5 0.79 1.7E-05 46.9 13.3 156 530-716 269-427 (443)
265 COG0457 NrfG FOG: TPR repeat [ 94.4 4.3 9.3E-05 37.7 25.3 197 488-689 60-268 (291)
266 PF13176 TPR_7: Tetratricopept 94.3 0.1 2.2E-06 31.4 4.1 26 693-718 1-26 (36)
267 KOG1920 IkappaB kinase complex 94.3 7.1 0.00015 43.9 20.1 23 26-48 682-704 (1265)
268 PF07719 TPR_2: Tetratricopept 94.3 0.092 2E-06 31.0 3.9 32 658-689 2-33 (34)
269 COG4105 ComL DNA uptake lipopr 94.3 4.4 9.4E-05 37.3 17.7 58 360-447 173-230 (254)
270 smart00299 CLH Clathrin heavy 94.2 2.5 5.4E-05 35.5 14.0 82 195-282 13-95 (140)
271 PF00515 TPR_1: Tetratricopept 94.2 0.094 2E-06 31.0 3.8 27 693-719 3-29 (34)
272 PF04184 ST7: ST7 protein; In 94.1 2.2 4.7E-05 43.0 14.6 69 629-697 263-336 (539)
273 PF07035 Mic1: Colon cancer-as 93.9 3.7 8E-05 35.3 15.8 134 209-383 15-149 (167)
274 PF10300 DUF3808: Protein of u 93.9 0.9 1.9E-05 47.3 12.7 143 573-720 177-334 (468)
275 PRK11619 lytic murein transgly 93.9 12 0.00026 40.8 39.5 62 322-384 98-159 (644)
276 PF12921 ATP13: Mitochondrial 93.8 0.93 2E-05 37.0 10.0 96 486-599 1-98 (126)
277 COG4649 Uncharacterized protei 93.8 3.8 8.2E-05 34.9 15.2 128 555-685 61-195 (221)
278 PRK09687 putative lyase; Provi 93.7 6.7 0.00015 37.6 25.9 125 551-688 140-265 (280)
279 KOG1586 Protein required for f 93.5 5.5 0.00012 35.8 16.1 23 668-690 165-187 (288)
280 PF13281 DUF4071: Domain of un 93.5 8.8 0.00019 38.0 22.1 71 127-197 145-225 (374)
281 KOG0890 Protein kinase of the 93.4 26 0.00056 43.2 25.2 281 425-722 1424-1733(2382)
282 KOG2280 Vacuolar assembly/sort 93.3 13 0.00028 39.7 36.4 50 333-382 517-574 (829)
283 PF00515 TPR_1: Tetratricopept 93.3 0.18 3.8E-06 29.8 3.9 32 658-689 2-33 (34)
284 COG4649 Uncharacterized protei 93.3 3.2 6.8E-05 35.3 12.1 132 588-721 58-197 (221)
285 KOG2066 Vacuolar assembly/sort 93.0 15 0.00032 39.5 23.2 55 230-284 363-420 (846)
286 PF13174 TPR_6: Tetratricopept 93.0 0.16 3.5E-06 29.6 3.4 29 693-721 2-30 (33)
287 PF08631 SPO22: Meiosis protei 92.9 9.2 0.0002 36.8 22.1 117 432-549 4-148 (278)
288 KOG4648 Uncharacterized conser 92.8 0.32 7E-06 45.7 6.5 95 596-693 104-201 (536)
289 COG3947 Response regulator con 92.7 5.6 0.00012 37.1 13.8 59 660-718 282-340 (361)
290 PF09613 HrpB1_HrpK: Bacterial 92.7 1.3 2.8E-05 37.4 9.2 119 589-712 7-130 (160)
291 PF09613 HrpB1_HrpK: Bacterial 92.5 0.95 2.1E-05 38.2 8.3 94 627-721 9-107 (160)
292 PF07721 TPR_4: Tetratricopept 92.5 0.21 4.5E-06 27.3 3.1 24 692-715 2-25 (26)
293 PF06552 TOM20_plant: Plant sp 92.3 0.89 1.9E-05 39.0 7.9 29 676-704 54-82 (186)
294 TIGR02561 HrpB1_HrpK type III 92.2 0.78 1.7E-05 37.9 7.2 72 636-707 21-94 (153)
295 COG2976 Uncharacterized protei 92.2 7.5 0.00016 34.0 13.3 127 556-690 57-192 (207)
296 KOG1258 mRNA processing protei 92.2 17 0.00036 37.9 31.8 129 154-285 45-180 (577)
297 KOG4234 TPR repeat-containing 92.1 2.8 6.1E-05 36.5 10.6 91 560-656 102-200 (271)
298 PF09205 DUF1955: Domain of un 92.0 5.5 0.00012 32.2 12.2 63 556-621 89-151 (161)
299 PF13181 TPR_8: Tetratricopept 91.9 0.42 9.1E-06 28.1 4.3 29 692-720 2-30 (34)
300 PRK15180 Vi polysaccharide bio 91.8 1.6 3.4E-05 43.4 10.0 124 563-691 299-425 (831)
301 COG3629 DnrI DNA-binding trans 91.7 0.96 2.1E-05 42.5 8.3 58 662-719 158-215 (280)
302 COG4785 NlpI Lipoprotein NlpI, 91.7 2.2 4.8E-05 37.7 9.7 88 601-691 77-167 (297)
303 COG3629 DnrI DNA-binding trans 91.5 1.8 3.8E-05 40.8 9.7 79 554-634 154-236 (280)
304 PRK12798 chemotaxis protein; R 91.3 17 0.00036 36.3 22.5 181 535-719 125-323 (421)
305 PF13176 TPR_7: Tetratricopept 91.3 0.36 7.8E-06 29.0 3.4 26 660-685 2-27 (36)
306 PF00637 Clathrin: Region in C 91.3 0.18 3.8E-06 42.8 2.9 85 63-150 13-97 (143)
307 PF04053 Coatomer_WDAD: Coatom 91.1 4.5 9.7E-05 41.6 13.1 132 92-248 295-427 (443)
308 PF08631 SPO22: Meiosis protei 91.1 15 0.00032 35.3 22.5 49 134-182 4-64 (278)
309 TIGR03504 FimV_Cterm FimV C-te 90.9 0.51 1.1E-05 29.8 3.8 27 695-721 3-29 (44)
310 PF13181 TPR_8: Tetratricopept 90.8 0.48 1E-05 27.9 3.7 31 659-689 3-33 (34)
311 COG1747 Uncharacterized N-term 90.6 21 0.00047 36.3 22.2 170 521-699 65-247 (711)
312 PF07035 Mic1: Colon cancer-as 90.5 11 0.00023 32.5 15.1 56 425-480 93-148 (167)
313 PF13374 TPR_10: Tetratricopep 90.2 0.62 1.3E-05 29.0 4.0 28 692-719 3-30 (42)
314 PF02259 FAT: FAT domain; Int 90.1 12 0.00025 37.7 15.4 68 655-722 144-215 (352)
315 PF13174 TPR_6: Tetratricopept 90.0 0.62 1.3E-05 27.0 3.7 31 660-690 3-33 (33)
316 KOG1586 Protein required for f 89.8 15 0.00032 33.2 15.5 134 555-692 76-230 (288)
317 COG2909 MalT ATP-dependent tra 89.8 35 0.00077 37.6 21.4 193 533-729 426-656 (894)
318 KOG1941 Acetylcholine receptor 89.7 3.5 7.5E-05 39.6 9.9 217 498-719 17-274 (518)
319 PF11207 DUF2989: Protein of u 89.7 2.4 5.2E-05 37.4 8.3 71 641-711 122-198 (203)
320 PF13170 DUF4003: Protein of u 89.6 10 0.00023 36.5 13.5 94 538-635 119-227 (297)
321 TIGR02561 HrpB1_HrpK type III 89.6 2.9 6.3E-05 34.7 8.2 81 590-673 8-94 (153)
322 PF14561 TPR_20: Tetratricopep 89.5 1.4 3.1E-05 33.4 6.1 49 658-706 23-73 (90)
323 PF09986 DUF2225: Uncharacteri 88.7 3.2 6.9E-05 37.8 8.9 67 659-725 120-199 (214)
324 KOG1585 Protein required for f 88.5 19 0.00042 32.8 13.0 170 526-717 35-216 (308)
325 KOG4642 Chaperone-dependent E3 88.4 1.9 4.2E-05 38.7 6.8 78 640-717 25-104 (284)
326 PF06552 TOM20_plant: Plant sp 88.0 10 0.00022 32.9 10.6 43 673-722 96-138 (186)
327 PF10602 RPN7: 26S proteasome 87.9 10 0.00022 33.4 11.3 62 555-617 38-101 (177)
328 KOG0545 Aryl-hydrocarbon recep 87.9 5.5 0.00012 36.1 9.3 62 660-721 233-294 (329)
329 TIGR02508 type_III_yscG type I 87.5 10 0.00023 28.9 9.0 62 130-194 46-107 (115)
330 KOG4648 Uncharacterized conser 87.1 2.4 5.2E-05 40.2 7.1 94 560-658 104-199 (536)
331 KOG0276 Vesicle coat complex C 87.1 11 0.00024 39.1 12.0 24 627-650 668-691 (794)
332 PF14853 Fis1_TPR_C: Fis1 C-te 86.5 3.1 6.7E-05 27.6 5.5 36 662-697 6-41 (53)
333 PF04097 Nic96: Nup93/Nic96; 86.5 54 0.0012 35.8 24.8 86 361-448 265-354 (613)
334 COG4455 ImpE Protein of avirul 86.0 3.3 7.2E-05 36.7 6.9 73 627-699 3-80 (273)
335 PF13170 DUF4003: Protein of u 85.9 35 0.00075 33.0 17.7 92 437-530 119-225 (297)
336 COG3947 Response regulator con 85.8 24 0.00051 33.2 12.4 146 139-284 149-341 (361)
337 COG2976 Uncharacterized protei 85.7 24 0.00052 31.0 11.9 127 156-286 56-189 (207)
338 COG4455 ImpE Protein of avirul 85.5 20 0.00044 32.0 11.3 124 556-691 4-139 (273)
339 KOG1464 COP9 signalosome, subu 85.4 31 0.00067 31.9 16.3 79 433-511 39-129 (440)
340 PF10345 Cohesin_load: Cohesin 85.3 63 0.0014 35.4 33.5 59 661-719 538-605 (608)
341 PF10602 RPN7: 26S proteasome 85.3 7 0.00015 34.4 8.9 95 590-685 37-141 (177)
342 PRK10941 hypothetical protein; 85.0 5.1 0.00011 37.9 8.3 58 663-720 187-244 (269)
343 PRK09687 putative lyase; Provi 84.5 40 0.00086 32.4 25.5 59 322-383 205-263 (280)
344 KOG1308 Hsp70-interacting prot 84.2 0.66 1.4E-05 44.0 2.1 85 638-722 127-213 (377)
345 PF02284 COX5A: Cytochrome c o 84.1 7.2 0.00016 29.9 7.0 60 571-633 28-87 (108)
346 KOG4570 Uncharacterized conser 83.9 5.2 0.00011 37.7 7.5 97 121-218 62-165 (418)
347 KOG1550 Extracellular protein 83.9 37 0.0008 36.5 15.3 150 565-724 261-430 (552)
348 smart00028 TPR Tetratricopepti 83.6 2.6 5.5E-05 23.7 4.0 27 693-719 3-29 (34)
349 KOG4570 Uncharacterized conser 83.3 14 0.00031 34.9 10.0 101 516-618 58-164 (418)
350 smart00028 TPR Tetratricopepti 83.1 2.5 5.5E-05 23.7 3.9 32 658-689 2-33 (34)
351 KOG4507 Uncharacterized conser 82.9 4.6 0.0001 41.4 7.3 102 600-702 618-721 (886)
352 cd00923 Cyt_c_Oxidase_Va Cytoc 82.9 8.2 0.00018 29.2 6.7 49 650-698 35-83 (103)
353 PF02284 COX5A: Cytochrome c o 82.5 8.4 0.00018 29.5 6.8 48 651-698 39-86 (108)
354 cd00923 Cyt_c_Oxidase_Va Cytoc 82.4 9.5 0.00021 28.9 6.9 59 571-632 25-83 (103)
355 PF13431 TPR_17: Tetratricopep 82.0 2.1 4.6E-05 25.2 3.0 20 590-609 14-33 (34)
356 PF14853 Fis1_TPR_C: Fis1 C-te 81.8 3.3 7.1E-05 27.5 4.1 30 693-722 3-32 (53)
357 PF04097 Nic96: Nup93/Nic96; 81.0 91 0.002 34.1 26.4 210 125-351 114-355 (613)
358 PF13374 TPR_10: Tetratricopep 80.7 3.3 7.1E-05 25.5 3.8 29 21-49 2-30 (42)
359 KOG3364 Membrane protein invol 80.4 8.9 0.00019 31.2 6.6 72 622-693 29-107 (149)
360 KOG4279 Serine/threonine prote 80.2 40 0.00087 36.2 12.9 101 563-691 297-400 (1226)
361 KOG1550 Extracellular protein 80.0 92 0.002 33.6 22.1 246 463-721 260-539 (552)
362 PF00637 Clathrin: Region in C 79.3 1.3 2.9E-05 37.4 2.1 54 493-546 13-66 (143)
363 KOG0276 Vesicle coat complex C 79.2 57 0.0012 34.3 13.3 126 133-286 596-722 (794)
364 PF11207 DUF2989: Protein of u 76.9 17 0.00038 32.2 8.1 73 570-644 123-197 (203)
365 COG5159 RPN6 26S proteasome re 76.7 67 0.0015 30.2 13.1 154 564-718 14-192 (421)
366 COG1747 Uncharacterized N-term 76.6 97 0.0021 32.0 19.7 161 451-618 65-234 (711)
367 COG0790 FOG: TPR repeat, SEL1 76.5 77 0.0017 30.7 20.1 148 568-723 92-269 (292)
368 PRK13800 putative oxidoreducta 76.4 1.6E+02 0.0034 34.3 23.3 228 54-302 632-863 (897)
369 COG2909 MalT ATP-dependent tra 76.1 1.4E+02 0.0029 33.4 29.8 39 324-380 348-386 (894)
370 PRK10941 hypothetical protein; 76.1 20 0.00044 34.0 9.0 69 629-697 185-255 (269)
371 PF12862 Apc5: Anaphase-promot 75.6 9.5 0.00021 29.3 5.7 55 667-721 8-71 (94)
372 PHA02875 ankyrin repeat protei 75.5 1E+02 0.0022 31.7 16.1 65 84-148 22-90 (413)
373 PF13929 mRNA_stabil: mRNA sta 75.4 52 0.0011 31.2 11.1 97 586-682 161-263 (292)
374 COG4976 Predicted methyltransf 75.3 5.2 0.00011 35.8 4.5 58 635-692 5-64 (287)
375 PF04910 Tcf25: Transcriptiona 75.3 77 0.0017 31.8 13.3 122 586-719 37-167 (360)
376 KOG0376 Serine-threonine phosp 75.0 3.2 6.9E-05 41.6 3.6 101 596-699 11-114 (476)
377 PRK13800 putative oxidoreducta 74.4 1.8E+02 0.0038 33.9 26.3 256 441-719 624-880 (897)
378 KOG3807 Predicted membrane pro 73.9 46 0.001 31.8 10.4 21 675-695 380-400 (556)
379 PF10579 Rapsyn_N: Rapsyn N-te 73.8 7.6 0.00016 28.1 4.2 47 601-647 18-65 (80)
380 PF14669 Asp_Glu_race_2: Putat 73.8 62 0.0014 28.4 13.1 53 327-379 136-206 (233)
381 smart00386 HAT HAT (Half-A-TPR 73.1 6.9 0.00015 22.2 3.5 29 671-699 1-29 (33)
382 PRK15180 Vi polysaccharide bio 73.1 29 0.00063 35.0 9.3 150 529-682 296-453 (831)
383 cd08819 CARD_MDA5_2 Caspase ac 72.2 29 0.00064 25.8 6.9 39 534-573 48-86 (88)
384 KOG3364 Membrane protein invol 71.8 53 0.0012 27.0 8.8 68 654-721 29-101 (149)
385 TIGR02508 type_III_yscG type I 71.4 44 0.00096 25.7 9.2 60 530-593 47-106 (115)
386 KOG1498 26S proteasome regulat 70.8 1.2E+02 0.0025 30.2 12.8 98 629-726 135-247 (439)
387 COG5159 RPN6 26S proteasome re 70.4 97 0.0021 29.2 20.5 34 360-393 9-42 (421)
388 PF10579 Rapsyn_N: Rapsyn N-te 70.0 13 0.00027 27.1 4.6 46 669-714 18-66 (80)
389 KOG4507 Uncharacterized conser 69.8 39 0.00084 35.2 9.6 134 587-722 569-707 (886)
390 PF13762 MNE1: Mitochondrial s 69.2 23 0.00051 29.6 6.8 53 153-205 78-131 (145)
391 KOG1464 COP9 signalosome, subu 68.9 1E+02 0.0022 28.8 16.1 89 425-514 149-259 (440)
392 KOG2581 26S proteasome regulat 67.8 59 0.0013 32.3 9.9 137 553-691 124-281 (493)
393 PF07163 Pex26: Pex26 protein; 66.8 62 0.0013 30.5 9.4 19 599-617 128-146 (309)
394 PF14863 Alkyl_sulf_dimr: Alky 66.4 29 0.00064 29.0 6.9 62 642-706 58-119 (141)
395 PF15469 Sec5: Exocyst complex 65.7 31 0.00067 30.6 7.5 29 705-733 153-181 (182)
396 PF13762 MNE1: Mitochondrial s 65.3 41 0.00089 28.2 7.4 86 20-105 38-128 (145)
397 PF11848 DUF3368: Domain of un 65.1 23 0.00049 23.0 4.8 38 194-231 8-45 (48)
398 PF04190 DUF410: Protein of un 64.7 1.3E+02 0.0028 28.5 15.4 81 624-720 89-170 (260)
399 PF09477 Type_III_YscG: Bacter 64.6 67 0.0014 25.1 8.1 73 604-683 21-95 (116)
400 KOG2908 26S proteasome regulat 64.2 1E+02 0.0023 29.9 10.6 18 601-618 87-104 (380)
401 COG4976 Predicted methyltransf 63.9 11 0.00025 33.8 4.2 52 599-652 5-56 (287)
402 KOG4077 Cytochrome c oxidase, 63.5 39 0.00085 27.2 6.5 49 650-698 77-125 (149)
403 KOG0551 Hsp90 co-chaperone CNS 63.2 44 0.00095 32.2 8.0 86 632-717 88-179 (390)
404 TIGR03504 FimV_Cterm FimV C-te 62.7 18 0.00039 22.9 3.8 25 559-583 5-29 (44)
405 KOG2034 Vacuolar sorting prote 62.0 2.7E+02 0.0058 31.2 23.0 46 427-477 510-555 (911)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 61.4 72 0.0016 26.1 8.3 42 675-716 81-124 (126)
407 cd00280 TRFH Telomeric Repeat 60.8 99 0.0022 27.1 8.9 23 329-351 117-139 (200)
408 PF07720 TPR_3: Tetratricopept 60.7 29 0.00064 20.8 4.3 19 695-713 5-23 (36)
409 PF04910 Tcf25: Transcriptiona 60.3 1.9E+02 0.0042 29.0 18.5 174 532-718 20-220 (360)
410 PF08424 NRDE-2: NRDE-2, neces 59.9 1.8E+02 0.004 28.7 15.0 114 569-687 47-184 (321)
411 cd08819 CARD_MDA5_2 Caspase ac 59.5 70 0.0015 24.0 6.8 40 432-472 47-86 (88)
412 PF07163 Pex26: Pex26 protein; 58.4 1E+02 0.0023 29.0 9.3 17 679-695 266-282 (309)
413 KOG4642 Chaperone-dependent E3 58.3 1.5E+02 0.0033 27.3 10.2 80 603-685 24-106 (284)
414 PF10366 Vps39_1: Vacuolar sor 57.8 84 0.0018 24.9 7.8 27 454-480 41-67 (108)
415 PF11846 DUF3366: Domain of un 57.8 35 0.00076 30.6 6.5 36 653-688 140-175 (193)
416 KOG2471 TPR repeat-containing 57.3 2.4E+02 0.0052 29.1 15.4 63 663-728 212-274 (696)
417 KOG4077 Cytochrome c oxidase, 56.8 64 0.0014 26.1 6.7 56 574-632 70-125 (149)
418 PHA02537 M terminase endonucle 56.5 1.3E+02 0.0029 27.7 9.7 108 563-690 93-211 (230)
419 PF14689 SPOB_a: Sensor_kinase 56.2 12 0.00025 26.0 2.4 46 239-284 6-51 (62)
420 KOG0403 Neoplastic transformat 56.2 2.4E+02 0.0051 28.7 19.8 58 425-482 513-573 (645)
421 COG4941 Predicted RNA polymera 55.2 2.1E+02 0.0046 27.9 11.0 123 568-696 271-404 (415)
422 PF11846 DUF3366: Domain of un 54.6 47 0.001 29.8 6.8 31 586-616 141-171 (193)
423 PF14561 TPR_20: Tetratricopep 53.5 97 0.0021 23.5 9.5 45 677-721 8-52 (90)
424 PF08311 Mad3_BUB1_I: Mad3/BUB 53.1 96 0.0021 25.4 7.7 24 325-348 101-124 (126)
425 KOG2297 Predicted translation 53.1 2.2E+02 0.0047 27.4 12.0 20 453-472 322-341 (412)
426 PF09670 Cas_Cas02710: CRISPR- 52.8 2E+02 0.0043 29.2 11.5 50 532-581 141-197 (379)
427 KOG2063 Vacuolar assembly/sort 52.7 4E+02 0.0087 30.4 20.9 28 454-481 506-533 (877)
428 PF13929 mRNA_stabil: mRNA sta 52.1 2.2E+02 0.0048 27.2 15.2 112 538-650 144-263 (292)
429 cd00280 TRFH Telomeric Repeat 51.8 82 0.0018 27.5 7.1 53 605-658 85-144 (200)
430 PHA03100 ankyrin repeat protei 51.2 3.2E+02 0.0069 28.8 14.5 125 81-207 52-192 (480)
431 PF10366 Vps39_1: Vacuolar sor 51.2 1.2E+02 0.0026 24.0 8.1 26 660-685 42-67 (108)
432 PF10345 Cohesin_load: Cohesin 50.9 3.7E+02 0.0081 29.5 36.3 184 55-248 28-250 (608)
433 KOG2581 26S proteasome regulat 50.0 2.8E+02 0.0062 27.9 13.6 173 534-719 138-345 (493)
434 PF10255 Paf67: RNA polymerase 49.6 40 0.00088 34.0 5.9 65 629-717 126-190 (404)
435 KOG2659 LisH motif-containing 49.6 2.1E+02 0.0045 26.2 12.0 92 555-650 28-128 (228)
436 KOG3824 Huntingtin interacting 49.3 52 0.0011 31.2 6.0 60 636-695 127-188 (472)
437 COG4259 Uncharacterized protei 48.2 93 0.002 23.8 6.0 55 208-262 57-111 (121)
438 KOG2422 Uncharacterized conser 48.1 3.7E+02 0.0079 28.6 15.2 128 156-284 286-447 (665)
439 PF14689 SPOB_a: Sensor_kinase 48.1 35 0.00077 23.6 3.8 26 592-617 26-51 (62)
440 PHA02875 ankyrin repeat protei 47.9 3.3E+02 0.0072 28.0 17.0 114 28-150 6-126 (413)
441 KOG0292 Vesicle coat complex C 47.9 28 0.00061 38.1 4.7 44 637-683 655-698 (1202)
442 COG4259 Uncharacterized protei 47.7 82 0.0018 24.1 5.7 32 667-698 82-113 (121)
443 PF09477 Type_III_YscG: Bacter 47.6 1.4E+02 0.003 23.5 8.9 52 530-583 48-99 (116)
444 PF11848 DUF3368: Domain of un 46.7 70 0.0015 20.7 4.8 36 162-197 10-45 (48)
445 PRK10564 maltose regulon perip 46.5 37 0.00079 32.4 4.8 45 254-298 254-299 (303)
446 KOG0376 Serine-threonine phosp 46.2 47 0.001 33.8 5.7 104 560-669 11-117 (476)
447 PF00244 14-3-3: 14-3-3 protei 46.0 2.5E+02 0.0055 26.1 12.3 162 559-722 7-200 (236)
448 KOG2659 LisH motif-containing 46.0 2.4E+02 0.0051 25.9 9.4 72 220-291 23-99 (228)
449 COG2912 Uncharacterized conser 45.1 65 0.0014 30.3 6.0 55 665-719 189-243 (269)
450 PF10516 SHNi-TPR: SHNi-TPR; 44.7 60 0.0013 19.8 3.9 28 692-719 2-29 (38)
451 KOG2062 26S proteasome regulat 44.7 4.7E+02 0.01 28.8 34.9 249 464-719 369-634 (929)
452 PRK13342 recombination factor 43.5 3.9E+02 0.0084 27.6 16.8 110 171-297 154-271 (413)
453 KOG2908 26S proteasome regulat 43.1 1.9E+02 0.004 28.3 8.7 65 532-597 85-164 (380)
454 smart00777 Mad3_BUB1_I Mad3/BU 42.8 1.9E+02 0.0041 23.7 7.9 40 676-715 82-123 (125)
455 COG5191 Uncharacterized conser 42.1 52 0.0011 31.3 4.9 77 622-698 104-183 (435)
456 KOG0530 Protein farnesyltransf 42.0 3E+02 0.0066 25.9 13.0 37 659-695 149-185 (318)
457 PF09670 Cas_Cas02710: CRISPR- 41.4 3.5E+02 0.0075 27.5 11.2 55 162-217 139-198 (379)
458 cd08326 CARD_CASP9 Caspase act 41.3 69 0.0015 23.9 4.7 52 120-171 27-78 (84)
459 KOG4814 Uncharacterized conser 41.2 1.9E+02 0.0041 31.0 9.0 62 661-722 398-459 (872)
460 PRK10564 maltose regulon perip 41.2 38 0.00083 32.2 4.0 29 694-722 260-288 (303)
461 KOG2297 Predicted translation 40.6 3.4E+02 0.0074 26.1 14.5 68 501-573 269-341 (412)
462 KOG2063 Vacuolar assembly/sort 40.5 6.1E+02 0.013 29.0 18.6 111 125-235 506-638 (877)
463 PF11817 Foie-gras_1: Foie gra 40.3 80 0.0017 29.7 6.2 21 596-616 185-205 (247)
464 PF04190 DUF410: Protein of un 40.0 3.3E+02 0.0072 25.8 18.3 36 419-454 88-123 (260)
465 KOG0890 Protein kinase of the 39.8 9.4E+02 0.02 31.0 31.0 63 625-687 1670-1732(2382)
466 PF07575 Nucleopor_Nup85: Nup8 39.7 3.5E+02 0.0076 29.4 11.7 351 91-496 148-539 (566)
467 KOG2300 Uncharacterized conser 38.8 4.7E+02 0.01 27.2 28.8 429 31-547 57-552 (629)
468 PF12862 Apc5: Anaphase-promot 38.6 1.5E+02 0.0033 22.6 6.5 17 232-248 50-66 (94)
469 PF12968 DUF3856: Domain of Un 38.1 2.1E+02 0.0046 23.0 10.7 23 694-716 103-125 (144)
470 cd08326 CARD_CASP9 Caspase act 38.0 1.7E+02 0.0037 21.9 6.5 39 534-572 42-80 (84)
471 KOG3807 Predicted membrane pro 37.8 3.9E+02 0.0085 26.0 12.6 53 598-650 284-336 (556)
472 PF11768 DUF3312: Protein of u 37.3 3.9E+02 0.0085 28.3 10.6 23 527-549 413-435 (545)
473 PF11663 Toxin_YhaV: Toxin wit 36.0 47 0.001 27.2 3.2 32 165-198 106-137 (140)
474 PF11817 Foie-gras_1: Foie gra 35.9 1.1E+02 0.0024 28.8 6.4 22 630-651 183-204 (247)
475 COG5187 RPN7 26S proteasome re 35.2 2.7E+02 0.0059 26.5 8.2 95 624-718 114-219 (412)
476 KOG0545 Aryl-hydrocarbon recep 35.2 3.8E+02 0.0082 25.0 10.2 68 627-694 232-301 (329)
477 KOG3824 Huntingtin interacting 34.7 71 0.0015 30.3 4.6 54 600-656 127-182 (472)
478 PF13934 ELYS: Nuclear pore co 33.4 3.9E+02 0.0085 24.7 13.7 154 17-176 22-198 (226)
479 KOG4521 Nuclear pore complex, 33.3 8.7E+02 0.019 28.6 14.1 57 592-650 986-1046(1480)
480 PF11838 ERAP1_C: ERAP1-like C 32.6 4.9E+02 0.011 25.5 18.6 82 605-686 146-230 (324)
481 KOG4567 GTPase-activating prot 32.3 4.8E+02 0.01 25.3 9.7 44 472-515 263-306 (370)
482 KOG0687 26S proteasome regulat 31.9 3.2E+02 0.0069 26.6 8.3 111 611-721 56-174 (393)
483 PRK09857 putative transposase; 31.9 3.5E+02 0.0075 26.3 9.1 63 662-724 211-273 (292)
484 COG5191 Uncharacterized conser 31.9 1.1E+02 0.0025 29.2 5.4 69 653-721 103-172 (435)
485 KOG4567 GTPase-activating prot 31.6 2.6E+02 0.0056 26.9 7.6 42 610-652 264-305 (370)
486 cd08332 CARD_CASP2 Caspase act 31.0 1E+02 0.0023 23.4 4.3 35 134-168 45-79 (90)
487 KOG0991 Replication factor C, 30.9 4.4E+02 0.0094 24.4 11.2 133 224-395 131-279 (333)
488 PRK12798 chemotaxis protein; R 30.4 6E+02 0.013 25.9 19.2 183 532-721 91-287 (421)
489 PF12796 Ank_2: Ankyrin repeat 30.4 2E+02 0.0044 21.2 6.1 12 105-116 7-18 (89)
490 KOG1308 Hsp70-interacting prot 30.3 74 0.0016 30.9 4.1 85 602-688 127-213 (377)
491 PF11663 Toxin_YhaV: Toxin wit 29.9 71 0.0015 26.2 3.3 33 462-496 105-137 (140)
492 KOG2422 Uncharacterized conser 29.7 7.2E+02 0.016 26.6 14.1 176 526-705 288-497 (665)
493 PF13646 HEAT_2: HEAT repeats; 29.5 1.6E+02 0.0034 21.8 5.3 6 129-134 51-56 (88)
494 PF09454 Vps23_core: Vps23 cor 29.5 1.2E+02 0.0026 21.3 4.0 48 551-600 6-53 (65)
495 PF14669 Asp_Glu_race_2: Putat 29.4 4.1E+02 0.0089 23.7 12.4 21 526-546 185-205 (233)
496 COG2178 Predicted RNA-binding 29.3 4.2E+02 0.009 23.7 9.8 26 592-617 32-57 (204)
497 PF02184 HAT: HAT (Half-A-TPR) 29.1 1.3E+02 0.0027 17.6 3.4 21 569-592 3-23 (32)
498 KOG4521 Nuclear pore complex, 28.7 1E+03 0.022 28.1 15.0 158 555-732 985-1168(1480)
499 smart00777 Mad3_BUB1_I Mad3/BU 28.3 3.3E+02 0.0072 22.3 8.3 23 326-348 102-124 (125)
500 PF11768 DUF3312: Protein of u 28.0 3.6E+02 0.0077 28.6 8.6 57 425-481 412-473 (545)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-96 Score=818.45 Aligned_cols=678 Identities=36% Similarity=0.621 Sum_probs=637.3
Q ss_pred CcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHh
Q 004733 18 KELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANT 97 (733)
Q Consensus 18 ~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (733)
+++...+|.++++|++.|.+++|+.+|+.| ...|++|+..+|..++.+|.+.+....+..++..+.+.+.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------- 117 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--------- 117 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC---------
Confidence 345555666666666666666666666666 3345566666666666666666666666666655554433
Q ss_pred HHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHH
Q 004733 98 ILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLF 177 (733)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 177 (733)
.+++..+|.++.+|++.|+++.|.++|++|+++|+.+||.+|.+|++.|++++|+++|
T Consensus 118 ----------------------~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f 175 (857)
T PLN03077 118 ----------------------SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLY 175 (857)
T ss_pred ----------------------CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHH
Confidence 3577788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCc
Q 004733 178 REMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDH 256 (733)
Q Consensus 178 ~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 256 (733)
++|...|+.||..||+.++.+| ..+++..+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|+. ||.
T Consensus 176 ~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~ 253 (857)
T PLN03077 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDC 253 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999997 999
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHcc---CchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 004733 257 ISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACL---CPRVGYQVHAQAMKSGFEAYTSVSNAAITMY 333 (733)
Q Consensus 257 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~ 333 (733)
.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|. +.+.+.+++..+.+.|+.||..+|++|+.+|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 8889999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcc---hHHHHHHHH
Q 004733 334 SSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGF---IEMVEMIHA 410 (733)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~~~ 410 (733)
++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.++.. .+.+.++++
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 899999999
Q ss_pred HHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhH
Q 004733 411 FVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTL 490 (733)
Q Consensus 411 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 490 (733)
.+.+.|+.|+..++++++++|++.|++++|.++|+.|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~ 492 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTL 492 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 589999999
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChH
Q 004733 491 SVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGK 570 (733)
Q Consensus 491 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 570 (733)
..++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.+
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 571 EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
+|+++|++|.+.| +.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 572 ~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 572 MAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHcC-CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999997669999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCcccc
Q 004733 651 QHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQPGCSW 730 (733)
Q Consensus 651 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 730 (733)
|+..|+..+|.+++.+|..+|+.+.++...+++.+++|+++..|..|+++|...|+|++|.++.+.|++.|++++|||+|
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 004733 731 IG 732 (733)
Q Consensus 731 ~~ 732 (733)
|+
T Consensus 731 ie 732 (857)
T PLN03077 731 VE 732 (857)
T ss_pred EE
Confidence 86
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-79 Score=684.85 Aligned_cols=598 Identities=27% Similarity=0.409 Sum_probs=575.7
Q ss_pred CCcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhH
Q 004733 17 SKELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVAN 96 (733)
Q Consensus 17 ~~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (733)
+.+++..+|.+|..|.+.|+...|.++|++| .+||..+|+.++.+|++.|+++.|..++..|...|+.|+..+|+
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m-----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~ 191 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKM-----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP 191 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcC-----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 3477889999999999999999999999999 25899999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccChHHHHHHHHhcC----CCCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhH
Q 004733 97 TILSLYKNARDLVSVKRVFSEIQ----NPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDI 172 (733)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 172 (733)
.++.++...+++..+.+++..+. .||+.+|+.++.+|++.|++++|.++|++|+++|..+||++|.+|++.|++++
T Consensus 192 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHH
Confidence 99999999999999888877654 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhc
Q 004733 173 GIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKG 251 (733)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 251 (733)
|+++|++|.+.|+.||..||+.++.+| ..|+++.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHcc---CchhHHHHHHHHHHhCCCcchHHHHH
Q 004733 252 YVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACL---CPRVGYQVHAQAMKSGFEAYTSVSNA 328 (733)
Q Consensus 252 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ 328 (733)
||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|. +.+.+.+++..+.+.|+.++..++++
T Consensus 352 --~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 352 --KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred --CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 9999999999999999999999999999999999999999999999988 88899999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcc---hHHH
Q 004733 329 AITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGF---IEMV 405 (733)
Q Consensus 329 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~ 405 (733)
|+++|++.|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++ .+.+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 999999999999999999999999999999999999999999999999999986 699999999999999988 8999
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 004733 406 EMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRP 485 (733)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 485 (733)
.+++..+.+.|+.++..++++++++|++.|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.|
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHhcccCChHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChhhHHHHHHHH
Q 004733 486 DEYTLSVALSSCARISSLRHGKQIHGYVL-KNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI-EKDTISWNALISAY 563 (733)
Q Consensus 486 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~ 563 (733)
|..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. +||..+|++|+.+|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999 68999999999999999999999999999999996 89999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDH 627 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~ 627 (733)
...++.+.+....+++.+ +.|+. ..|..+...|...|+|++|.++.+.|.+. |+.+++..
T Consensus 668 ~~~~~~e~~e~~a~~l~~---l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g~ 728 (857)
T PLN03077 668 RIHRHVELGELAAQHIFE---LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPGC 728 (857)
T ss_pred HHcCChHHHHHHHHHHHh---hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCCc
Confidence 999999999999999988 55665 55777778999999999999999999999 99888653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-69 Score=586.94 Aligned_cols=478 Identities=32% Similarity=0.549 Sum_probs=453.3
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHcc---CchhHHHHHHHHHHhCCCcchHHHHHH
Q 004733 254 CDHISYNVMMDGLASVGRVEEALIRFRDMLVAS-LRPSELTFVSVMSACL---CPRVGYQVHAQAMKSGFEAYTSVSNAA 329 (733)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l 329 (733)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|. ..+.+.+++..+.+.|+.||..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455677777777777777777777777777653 6677777777777776 556677777777777888888888999
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcc---hHHHH
Q 004733 330 ITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGF---IEMVE 406 (733)
Q Consensus 330 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~ 406 (733)
+.+|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.++.. .+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887 88999
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 004733 407 MIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPD 486 (733)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 486 (733)
.++..+.+.|+.||..++++++++|++.|++++|.++|+.|.++|+++||.++.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 004733 487 EYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQH 566 (733)
Q Consensus 487 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (733)
..||+.++.+|++.|.+++|.+++..|.+.|+.|+..+|++++++|+++|++++|.++|++|.++|..+||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHH
Q 004733 567 GEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAER 646 (733)
Q Consensus 567 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 646 (733)
|+.++|+++|++|.+.| +.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+
T Consensus 405 G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 405 GRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred CCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999877999999999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCC
Q 004733 647 VINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQP 726 (733)
Q Consensus 647 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 726 (733)
++++++..|+..+|.+++.+|..+|+++.|+.+++++.+..|++...|..|+++|.+.|++++|.+++++|++.|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 004733 727 GCSWIG 732 (733)
Q Consensus 727 ~~~~~~ 732 (733)
||+|++
T Consensus 564 g~s~i~ 569 (697)
T PLN03081 564 ACTWIE 569 (697)
T ss_pred CeeEEE
Confidence 999985
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-64 Score=550.07 Aligned_cols=522 Identities=15% Similarity=0.237 Sum_probs=354.4
Q ss_pred chhhHhHHHHHhhccChHHHHHHHHhcCC-----CCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhh
Q 004733 92 PHVANTILSLYKNARDLVSVKRVFSEIQN-----PDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTE 166 (733)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 166 (733)
...|..++..+.+.|++++|.++|++|.. ++..+++.++.+|.+.|.+++|..+|+.|..|+..+|+.+|.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34444444444444455555555544433 2233444455555555666666666666655666666666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHH
Q 004733 167 NGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKV 245 (733)
Q Consensus 167 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 245 (733)
.|+++.|.++|+.|.+.|+.||..+|+.++.+| +.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 666666666666666666666666666666655 6666666666666666666666666666666666666666666666
Q ss_pred HHhhh--cCCCCccchHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCc
Q 004733 246 FEEAK--GYVCDHISYNVMMDGLASVGRVEEALIRFRDMLV--ASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEA 321 (733)
Q Consensus 246 ~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~ 321 (733)
|++|. ++.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..||+++
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL------------------------ 585 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL------------------------ 585 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH------------------------
Confidence 66653 3455666666666666666666666666666654 3556665555333
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhccc----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004733 322 YTSVSNAAITMYSSCGKIDEACMIFARLQE----KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLA 397 (733)
Q Consensus 322 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 397 (733)
|.+|++.|++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus 586 --------I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 586 --------MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred --------HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344455555555555554443 3334455555555555555555555555555555555555555554
Q ss_pred hhcc---hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhCCCchH
Q 004733 398 SSGF---IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS----PRNIITWNTLINGFLLNGFPVQ 470 (733)
Q Consensus 398 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~ 470 (733)
++.+ .+.+..+++.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|. .||..+|+.||.+|++.|++++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4443 44555555555555555555555999999999999999999999995 7899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 004733 471 GLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE 550 (733)
Q Consensus 471 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 550 (733)
|+++|++|...|+.||..||+.++.+|++.|+++.|.+++.+|.+.|+.||..+|++++..|. +++++|..+.+.+..
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999997654 246666655443331
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHH
Q 004733 551 KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSC 630 (733)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ 630 (733)
|+. .......+..+.|..+|++|++.| +.||..||+.++.+++..+....+..+++.|... +..|+..+|+.
T Consensus 816 -----f~~-g~~~~~n~w~~~Al~lf~eM~~~G-i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~ 887 (1060)
T PLN03218 816 -----FDS-GRPQIENKWTSWALMVYRETISAG-TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLST 887 (1060)
T ss_pred -----hhc-cccccccchHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHH
Confidence 110 111112234567999999999999 9999999999998888999999999999988776 78888999999
Q ss_pred HHHHhhhcCChHHHHHHHHhcC---CCCCh
Q 004733 631 MLDLLGRAGYLDEAERVINSQH---IQARS 657 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 657 (733)
+++++.+. .++|..+++.|. ..|+.
T Consensus 888 Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 888 LVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 99998432 468999999877 45554
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-63 Score=541.95 Aligned_cols=526 Identities=18% Similarity=0.268 Sum_probs=435.6
Q ss_pred CCCCcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchh
Q 004733 15 NTSKELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHV 94 (733)
Q Consensus 15 ~~~~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 94 (733)
...+++...|..++..|.+.|++.+|+++|++|....-+.++..+++.++.+|++.|....|..+++.|.+ |+..+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 44556788899999999999999999999999955533567888889999999999999999999988864 89999
Q ss_pred hHhHHHHHhhccChHHHHHHHHhcCC----CCcchhhHHHHHhhccCChhHHHHHhccCC----CCChhhHHHHHHHHhh
Q 004733 95 ANTILSLYKNARDLVSVKRVFSEIQN----PDVYSWTTFLSACTKMGHVDYACEVFDKMP----DRDLPVYNAMITGCTE 166 (733)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 166 (733)
|+.++.+|++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999988864 899999999999999999999999999998 5799999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHH--hCCCCchHHHHHHHHHhHhcCChHHHH
Q 004733 167 NGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTK--SGFSCLVSVVNALITMYFNCGNVVDAC 243 (733)
Q Consensus 167 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~ 243 (733)
.|++++|.++|+.|.+.|+.||..+|+.++.+| +.|++++|.+++++|.+ .|+.||..+|+.+|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999 99999999999999986 678999999999999999999999999
Q ss_pred HHHHhhh--cCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHcc---CchhHHHHHHHHHHhC
Q 004733 244 KVFEEAK--GYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACL---CPRVGYQVHAQAMKSG 318 (733)
Q Consensus 244 ~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~~~~~~~~~~~~~~g 318 (733)
++|+.|. ++.|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|. +.+.+.+++..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999987 4678999999999999999999999999999999999999999999999988 7888999999999999
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 004733 319 FEAYTSVSNAAITMYSSCGKIDEACMIFARLQE----KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGS 394 (733)
Q Consensus 319 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 394 (733)
+.|+..+|+.+|.+|++.|++++|.++|++|.. ||..+||.||.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999999999999999999999963 8999999999999999999999999999999999999999987
Q ss_pred HHHhhcc---hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHH
Q 004733 395 LLASSGF---IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQG 471 (733)
Q Consensus 395 ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 471 (733)
++.+|.. .+.+..++..|.+.|+.||..+|++++..|.+ ++++|.++.+.+.. |+. .......+..+.|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~A 831 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSWA 831 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHHH
Confidence 7776665 67777777777777777777777777655431 33444333222210 000 0000011122346
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 004733 472 LQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI-- 549 (733)
Q Consensus 472 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 549 (733)
+.+|++|.+.|+.||..||+.++ .++++.+..+.+..+++.|.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL-----------------------------------~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVL-----------------------------------GCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHH-----------------------------------HHhcccccHHHHHHHHHHhccC
Confidence 66666666666666666655554 44445555555566665553
Q ss_pred --CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 004733 550 --EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA 590 (733)
Q Consensus 550 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~ 590 (733)
.++..+|+++|.++.+. .++|+.+|++|.+.| +.|+..
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G-i~p~~~ 916 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG-VVPSVS 916 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC-CCCCcc
Confidence 24556777777776432 368999999999999 888864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-63 Score=542.69 Aligned_cols=468 Identities=24% Similarity=0.395 Sum_probs=451.3
Q ss_pred CCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHH
Q 004733 151 DRDLPVYNAMITGCTENGYEDIGIGLFREMHKLD-VRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNA 228 (733)
Q Consensus 151 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 228 (733)
..+..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+| +.++++.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466789999999999999999999999998764 789999999999999 99999999999999999999999999999
Q ss_pred HHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHcc---Cch
Q 004733 229 LITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACL---CPR 305 (733)
Q Consensus 229 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~~ 305 (733)
++.+|++.|+++.|.++|++|+. ||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|. ...
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999988 778
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004733 306 VGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGI 385 (733)
Q Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 385 (733)
.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|++|..+|+.+||.++.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhhcc---hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 004733 386 RPDEFTFGSLLASSGF---IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGF 462 (733)
Q Consensus 386 ~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 462 (733)
.||..||++++.++.. .+.+.+++..+.+.|+.|+..++++++++|++.|++++|.++|+.|.++|+.+||.||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999887 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHH
Q 004733 463 LLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLK-NNLISKMSLGNAMITLYAKCGDLDCS 541 (733)
Q Consensus 463 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A 541 (733)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 79999999999999999999999999
Q ss_pred HHHHHhcC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 542 LRVFNMMI-EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 542 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
.+++++|. +|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..|++.|++.|++++|.++++.|.++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~- 557 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK- 557 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 99999997 78999999999999999999999999999986 5565 578999999999999999999999999998
Q ss_pred CCCCC
Q 004733 620 GFIPA 624 (733)
Q Consensus 620 ~~~p~ 624 (733)
|+...
T Consensus 558 g~~k~ 562 (697)
T PLN03081 558 GLSMH 562 (697)
T ss_pred CCccC
Confidence 87644
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-37 Score=355.27 Aligned_cols=690 Identities=11% Similarity=0.039 Sum_probs=420.1
Q ss_pred CCCcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhh
Q 004733 16 TSKELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVA 95 (733)
Q Consensus 16 ~~~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (733)
..+.+...+..+...+.+.|++++|...|+++.... +.+...+..+...+...|+++.|..+++.+.+.. +.+...+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 196 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDAL 196 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 445666778888888888999999999998886542 2344567777777888889999998888887653 4566778
Q ss_pred HhHHHHHhhccChHHHHHHHHhcCC---CCcchhhHHHHHhhccCChhHHHHHhccCCCC---ChhhHHHHHHHHhhcCC
Q 004733 96 NTILSLYKNARDLVSVKRVFSEIQN---PDVYSWTTFLSACTKMGHVDYACEVFDKMPDR---DLPVYNAMITGCTENGY 169 (733)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~ 169 (733)
..+...+...|+++.|...|+.... .++..+..+...+...|++++|...++.+.+. +...+......+.+.|+
T Consensus 197 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 8888888888899888888887754 34456777777888888888888888776531 22233333344556677
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHH-hh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHH
Q 004733 170 EDIGIGLFREMHKLDVRRDNYSFASVLS-VC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFE 247 (733)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 247 (733)
+++|...|+.+.+.+ |+.......+. .+ ..|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++
T Consensus 277 ~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 353 (899)
T TIGR02917 277 YEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLS 353 (899)
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777766543 33222222222 22 6666666666666666543 2334445555555666666666666666
Q ss_pred hhhcCCC-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHcc---CchhHHHHHHHHHHh-----
Q 004733 248 EAKGYVC-DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSEL-TFVSVMSACL---CPRVGYQVHAQAMKS----- 317 (733)
Q Consensus 248 ~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~---~~~~~~~~~~~~~~~----- 317 (733)
.+....| +...+..+...+.+.|++++|.++|+++.+.. |+.. .+..+...+. +.+.+...+..+.+.
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 431 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG 431 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcch
Confidence 5543323 34455555556666666666666666555432 2211 1111111111 333333333333222
Q ss_pred ----------------------------CCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHh
Q 004733 318 ----------------------------GFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQ 366 (733)
Q Consensus 318 ----------------------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 366 (733)
..+.+..++..+...+...|++++|...|+++.+ .+...+..+...+..
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 1233445555556666666666666666655543 223344455555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHh---hcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHH
Q 004733 367 RNLGRSAILAYLEMQSVGIRPDEFTFGSLLAS---SGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQI 443 (733)
Q Consensus 367 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 443 (733)
.|++++|...++++...+. .+...+..+... .+..+.+...++.+...+ +.+...+..+...+.+.|++++|..+
T Consensus 512 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666666554321 122222222211 222455555555444432 22334445566666666666666666
Q ss_pred HhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC
Q 004733 444 FHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLIS 520 (733)
Q Consensus 444 ~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 520 (733)
++.+. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 66654 3345566666666666777777777776666543 2344455566666666677777776666665532 23
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS 597 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 597 (733)
+...+..++..+...|++++|.++++.+.+ ++...+..+...+...|++++|.+.|+++... .|+..++..+..
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~ 744 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHR 744 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHH
Confidence 345566666666666677777666666653 23445666666677777777777777777763 355566666667
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRL 675 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 675 (733)
++...|++++|.+.++++.+. .+.+...+..+...|.+.|++++|.+.|+++. .++++..+..+...+...|+ .+
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 777777777777777777654 33445667777777777777777777777765 34445566777777777777 66
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 676 GRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 676 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.++.
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777777777777777777777777777777777777777777776643
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-37 Score=354.65 Aligned_cols=686 Identities=11% Similarity=0.028 Sum_probs=500.6
Q ss_pred CcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHh
Q 004733 18 KELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANT 97 (733)
Q Consensus 18 ~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (733)
|.+...|..+...+...|++++|+++++++... .+++...+..+...+...|+++.|...++...+.. +.++.++..
T Consensus 156 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 232 (899)
T TIGR02917 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTA--DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLA 232 (899)
T ss_pred CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 344555666666666777777777777666443 23344455555555666666666666666665543 234555566
Q ss_pred HHHHHhhccChHHHHHHHHhcCC--CC-cchh----------------------------------hHHHHHhhccCChh
Q 004733 98 ILSLYKNARDLVSVKRVFSEIQN--PD-VYSW----------------------------------TTFLSACTKMGHVD 140 (733)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~----------------------------------~~l~~~~~~~g~~~ 140 (733)
++..+...|++++|...++...+ |+ +..+ ..+...+...|+++
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 66666666666666666655433 11 1111 12222334445555
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHH
Q 004733 141 YACEVFDKMPD---RDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTK 216 (733)
Q Consensus 141 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~ 216 (733)
.|...|+...+ .+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+ ..|++++|.++++.+.+
T Consensus 313 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATE 391 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555544331 233345555556666666666666666665532 22333444444444 66777777777776665
Q ss_pred hCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCC-ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 004733 217 SGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCD-HISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFV 295 (733)
Q Consensus 217 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 295 (733)
.. +.+...+..+...+...|++++|.+.|+......|+ ......++..+.+.|++++|+.+++.+.... .++..++.
T Consensus 392 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 469 (899)
T TIGR02917 392 LD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHN 469 (899)
T ss_pred cC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHH
Confidence 43 234455566666666777777777777665554442 3345556667777788888888887776642 33444555
Q ss_pred HHHHHcc---CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCC
Q 004733 296 SVMSACL---CPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNL 369 (733)
Q Consensus 296 ~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 369 (733)
.+...+. +.+.+...+..+.+.. +.+...+..+...+...|++++|.+.++++.. .+..++..+...+.+.|+
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC
Confidence 5544443 7777888888877653 44566778889999999999999999999876 356678889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHh---hcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 004733 370 GRSAILAYLEMQSVGIRPDEFTFGSLLAS---SGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHN 446 (733)
Q Consensus 370 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (733)
.++|..+++++...+. .+...+..+... .+..+.+...++.+.+.. +.+...+..+..++...|++++|...|+.
T Consensus 549 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987542 223333333333 334888888888876543 45677889999999999999999999998
Q ss_pred cC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchh
Q 004733 447 MS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMS 523 (733)
Q Consensus 447 ~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 523 (733)
+. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+..
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 704 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAAL 704 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChH
Confidence 74 4466788899999999999999999999998864 4457788899999999999999999999998775 45667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 524 LGNAMITLYAKCGDLDCSLRVFNMMI--EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 524 ~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
.+..+...+...|++++|.+.|+.+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|..
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 78888999999999999999999986 4566777888999999999999999999999864 5567788888999999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRII 679 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 679 (733)
.|++++|.+.|+++.+. .+++...+..+...+.+.|+ ++|+..++++. ..| ++..+..+...+...|++++|...
T Consensus 783 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999976 34567789999999999999 88999999865 334 455677888889999999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 680 AGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 680 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++++++.+|.++.++..++.+|.+.|++++|.+++++|++
T Consensus 860 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=7.5e-26 Score=259.16 Aligned_cols=629 Identities=10% Similarity=0.020 Sum_probs=449.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchh-------
Q 004733 22 LKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHV------- 94 (733)
Q Consensus 22 ~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------- 94 (733)
...-...+.+...++.+.|.+.+.++.... +-|+..+..++..+.+.|+.++|.+.+++..+..... +..
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~-~~~~~~~~~~ 105 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS-NAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHH
Confidence 345666778889999999999999996542 2345667788888889999999999999998765332 221
Q ss_pred ---------hHhHHHHHhhccChHHHHHHHHhcCCCCcchhh---HHHH-HhhccCChhHHHHHhccCCC--C-ChhhHH
Q 004733 95 ---------ANTILSLYKNARDLVSVKRVFSEIQNPDVYSWT---TFLS-ACTKMGHVDYACEVFDKMPD--R-DLPVYN 158 (733)
Q Consensus 95 ---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~-~~~~~g~~~~a~~~~~~~~~--~-~~~~~~ 158 (733)
...+...+...|++++|.+.++...+.++.... .... .....|+.++|+..++++.+ | +...+.
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~ 185 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN 185 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 234455788999999999999998763322211 1112 22346999999999999874 3 455788
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCC----------------CChh---hHHHHHHhh-ccCchHHHHHHHHHHHHhC
Q 004733 159 AMITGCTENGYEDIGIGLFREMHKLDVR----------------RDNY---SFASVLSVC-DAGLLEFGRQLHSLVTKSG 218 (733)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~m~~~~~~----------------~~~~---~~~~ll~~~-~~~~~~~a~~~~~~~~~~~ 218 (733)
.+...+...|++++|+..|+++.+.... ++.. .+...+..+ .......+...+....+..
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 8889999999999999999998663211 0111 122222223 3333455666666554443
Q ss_pred CCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCC-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHH
Q 004733 219 FSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVC-DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRP-SELTFVS 296 (733)
Q Consensus 219 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~ 296 (733)
..|+... ......+...|++++|...|++.....| +...+..+...+.+.|++++|+..|++..+..... ....+..
T Consensus 266 ~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 266 ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 3333221 2345667789999999999999877667 66788889999999999999999999988753221 1112222
Q ss_pred HHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHH
Q 004733 297 VMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSA 373 (733)
Q Consensus 297 ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 373 (733)
++... ...........+.+.|++++|...|++... .+...+..+...+...|++++|
T Consensus 345 ll~~~--------------------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 345 LLKVN--------------------RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred HHHhh--------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 22100 001112234567789999999999999876 3455677788999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--
Q 004733 374 ILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRN-- 451 (733)
Q Consensus 374 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 451 (733)
++.|++..+. .|+.... +..+...|. .++.++|..+++.+....
T Consensus 405 ~~~y~~aL~~--~p~~~~a-------------------------------~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 405 ERYYQQALRM--DPGNTNA-------------------------------VRGLANLYR-QQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHHHh--CCCCHHH-------------------------------HHHHHHHHH-hcCHHHHHHHHHhCCHHHHH
Confidence 9999998874 3432211 123334443 356777777777664221
Q ss_pred ----------hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC
Q 004733 452 ----------IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPD-EYTLSVALSSCARISSLRHGKQIHGYVLKNNLIS 520 (733)
Q Consensus 452 ----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 520 (733)
...+..+...+...|++++|++.|++.++.. |+ ...+..+...+...|++++|...++.+.+... .
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~ 527 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-N 527 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Confidence 1234455667788899999999999888764 43 45566777788888999999999888876442 2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----hh---------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD----TI---------SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKP 587 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p 587 (733)
+...+..+...+...++.++|...++.+.... .. .+..+...+...|+.++|..+++. .++
T Consensus 528 ~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~ 601 (1157)
T PRK11447 528 DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPP 601 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCC
Confidence 33344444555677899999999998876321 11 122356678899999999999872 355
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHH
Q 004733 588 DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFS 665 (733)
Q Consensus 588 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~ 665 (733)
+...+..+...+.+.|++++|+..|+++.+. -+.+...+..++.+|...|++++|++.++.+. ..|+ ...+..+..
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 6667778888999999999999999999976 23346788899999999999999999999876 4444 445677788
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 666 ACAAHGNLRLGRIIAGLLLEREQDKP------SVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 666 ~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++...|++++|.+.++++.+..|+++ .++..++.++...|++++|+..|++...
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999999877654 3667789999999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.1e-25 Score=251.75 Aligned_cols=599 Identities=9% Similarity=-0.019 Sum_probs=422.9
Q ss_pred CCCcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccH-----------------HHHHHHHhccchhhhhhh
Q 004733 16 TSKELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSL-----------------STTLAACANLRNAAFGNQ 78 (733)
Q Consensus 16 ~~~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~ 78 (733)
..|.++..+..+++.+.+.|+.++|.+.+++..+. .|+...+ ..+.+.+...|+.++|..
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~ 133 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALA 133 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHH
Confidence 34557778889999999999999999999999665 3444332 222335778899999999
Q ss_pred HHHHHHHcccccCchhhHhHHHHHhhccChHHHHHHHHhcCC--C-CcchhhHHHHHhhccCChhHHHHHhccCCCCCh-
Q 004733 79 LHAYALRAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQN--P-DVYSWTTFLSACTKMGHVDYACEVFDKMPDRDL- 154 (733)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 154 (733)
.++...+...+................|+.++|.+.+++... | ++..+..+...+...|+.++|+..++++.....
T Consensus 134 ~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 134 SYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 999988654332211122222333346999999999999876 3 345677888889999999999999998753211
Q ss_pred -----hh-----------------HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHH-Hhh-ccCchHHHHHH
Q 004733 155 -----PV-----------------YNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVL-SVC-DAGLLEFGRQL 210 (733)
Q Consensus 155 -----~~-----------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~-~~~~~~~a~~~ 210 (733)
.. +...+..+-.......|...+.........|+... ... ..+ ..|++++|...
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~--~~~G~~~~~~g~~~~A~~~ 291 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA--RAQGLAAVDSGQGGKAIPE 291 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH--HHHHHHHHHCCCHHHHHHH
Confidence 01 11112222222234455566655544322333221 122 233 88999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCcc---chH------------HHHHHHHhcCChHHH
Q 004733 211 HSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHI---SYN------------VMMDGLASVGRVEEA 275 (733)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~------------~li~~~~~~g~~~~a 275 (733)
+++.++.. +.+..++..+...+.+.|++++|...|++.....|+.. .|. .....+.+.|++++|
T Consensus 292 l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 292 LQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 99999864 44678889999999999999999999999776556432 122 123456789999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-
Q 004733 276 LIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--K- 352 (733)
Q Consensus 276 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~- 352 (733)
+..|++.... .|+. ...+..+..++...|++++|++.|++..+ |
T Consensus 371 ~~~~~~Al~~--~P~~-------------------------------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 371 ERLYQQARQV--DNTD-------------------------------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHHHh--CCCC-------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999875 2322 22335567889999999999999999886 3
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHH
Q 004733 353 DIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYA 432 (733)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (733)
+...+..+...|. .++.++|+.+++.+.... +. ...... . . .....+..+...+.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~--~~--~~~~~~-------------~-----~--l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQ--RR--SIDDIE-------------R-----S--LQNDRLAQQAEALE 472 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH--HH--HHHHHH-------------H-----H--hhhhHHHHHHHHHH
Confidence 3445556666664 567899988887654321 00 000000 0 0 01112345677888
Q ss_pred hcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHH
Q 004733 433 KNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQI 509 (733)
Q Consensus 433 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 509 (733)
..|++++|.+.|++.. +.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999875 3456677888889999999999999999988754 12333333344456678899999988
Q ss_pred HHHHHHcCCCCch---------hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 510 HGYVLKNNLISKM---------SLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQ 580 (733)
Q Consensus 510 ~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 580 (733)
++.+......++. ..+......+...|+.++|.++++.- ..+...+..+...+.+.|++++|+..|++..
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al 630 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVL 630 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8775433222221 12234567788999999999999843 2355567778899999999999999999999
Q ss_pred HcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-h
Q 004733 581 DVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-S 657 (733)
Q Consensus 581 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~ 657 (733)
+.. +.+...+..+...+...|++++|.+.++.+.+. .|+ ......+..++...|++++|.++++++. ..|+ +
T Consensus 631 ~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 631 TRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 954 334677888999999999999999999988754 444 4567778889999999999999999876 2221 1
Q ss_pred ------hhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 658 ------DNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 658 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
..+..+...+...|++++|+..+++++.
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2455667788999999999999999985
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=6.3e-23 Score=223.56 Aligned_cols=258 Identities=9% Similarity=0.024 Sum_probs=160.9
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004733 451 NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMIT 530 (733)
Q Consensus 451 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 530 (733)
+...|..+..++.. +++++|+..+.+..... |+......+...+...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44455555555555 66777777666665543 55444333444445677777777777765443 233333445556
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHH
Q 004733 531 LYAKCGDLDCSLRVFNMMIEKDTISWNAL---ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDD 607 (733)
Q Consensus 531 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 607 (733)
.+.+.|++++|...++...+.++...+.. .......|++++|...+++..+ +.|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence 66677777777777776654333222222 2223344777777777777776 44666666666677777777777
Q ss_pred HHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHh
Q 004733 608 GTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLL 684 (733)
Q Consensus 608 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 684 (733)
|...+++..+. .|+ ...+..+..++...|++++|++.+++.. ..| ++..+..+..++...|++++|+..++++.
T Consensus 628 A~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 628 AVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777654 443 4456666667777777777777776654 334 34456667777777777777777777777
Q ss_pred ccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 685 EREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 685 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++.|+++.+....+++.....+++.|.+-+...-.
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777776654433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=3.6e-21 Score=209.94 Aligned_cols=556 Identities=11% Similarity=0.018 Sum_probs=334.3
Q ss_pred cChHHHHHHHHhcCC--CC-cchhhHHHHHhhccCChhHHHHHhccCCCCCh--hhHHHHHHHHhhcCChhHHHHHHHHH
Q 004733 106 RDLVSVKRVFSEIQN--PD-VYSWTTFLSACTKMGHVDYACEVFDKMPDRDL--PVYNAMITGCTENGYEDIGIGLFREM 180 (733)
Q Consensus 106 ~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m 180 (733)
|++++|...|+...+ |+ +.++..+...|.+.|+.++|+..+++..+.+. ..|..++..+ +++++|..+++++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l 134 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEEL 134 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHH
Confidence 666666666666544 22 23455555556666666666666655543211 2222222222 5555666666666
Q ss_pred HHcCCCCChhhHHHHH-Hh------hccCchHHHHHHHHHHHHhCCCCchHHHHHH-HHHhHhcCChHHHHHHHHhhhcC
Q 004733 181 HKLDVRRDNYSFASVL-SV------CDAGLLEFGRQLHSLVTKSGFSCLVSVVNAL-ITMYFNCGNVVDACKVFEEAKGY 252 (733)
Q Consensus 181 ~~~~~~~~~~~~~~ll-~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~ 252 (733)
... .|+......++ .. ..-...+.|.+.++ .......|++.+.... ...|.+.+++++|++++.++.+.
T Consensus 135 ~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 135 LAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 553 23322222111 11 11222233443333 2222222223322222 44555555555555555554443
Q ss_pred CCCccc-hHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 004733 253 VCDHIS-YNVMMDGLAS-VGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAI 330 (733)
Q Consensus 253 ~~~~~~-~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 330 (733)
.|.... ...|...|.+ .++ +++..+++ ..+..++.+...+.
T Consensus 212 ~pl~~~~~~~L~~ay~q~l~~-~~a~al~~------------------------------------~~lk~d~~l~~ala 254 (987)
T PRK09782 212 NTLSAAERRQWFDVLLAGQLD-DRLLALQS------------------------------------QGIFTDPQSRITYA 254 (987)
T ss_pred CCCCHHHHHHHHHHHHHhhCH-HHHHHHhc------------------------------------hhcccCHHHHHHHH
Confidence 332222 2333333333 133 33333321 12345677788999
Q ss_pred HHHHhcCCHHHHHHHHHhccc-----CCcccHHHH------------------------------HHHHHhcCChHHHHH
Q 004733 331 TMYSSCGKIDEACMIFARLQE-----KDIVSWNTM------------------------------ISTYAQRNLGRSAIL 375 (733)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l------------------------------i~~~~~~g~~~~a~~ 375 (733)
+.|.+.|+.++|.++++++.. |+..+|--+ +..+.+.++++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999999876 333333222 222223333332222
Q ss_pred HHHHHHHCCCCCChhhHHHHHHhhcc-----hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 004733 376 AYLEMQSVGIRPDEFTFGSLLASSGF-----IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSP- 449 (733)
Q Consensus 376 ~~~~m~~~~~~p~~~~~~~ll~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 449 (733)
+ ..+.|.... ..++..+. ...+...+..+.+.. +-+....-.+.-...+.|+.++|.++|+..-+
T Consensus 335 ~------~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~ 405 (987)
T PRK09782 335 L------LATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPF 405 (987)
T ss_pred H------hcCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC
Confidence 2 113333332 12222221 333333333333321 11333333444456788999999999998753
Q ss_pred -CCh----hhHHHHHHHHHhCCC---chHHHHH------------HH----------HHHH-CCCCC---CHHhHHHHHH
Q 004733 450 -RNI----ITWNTLINGFLLNGF---PVQGLQH------------FS----------ELLM-SELRP---DEYTLSVALS 495 (733)
Q Consensus 450 -~~~----~~~~~li~~~~~~~~---~~~a~~~------------~~----------~m~~-~~~~p---~~~~~~~ll~ 495 (733)
++. ..-.-++..|.+.+. ..++..+ .. .... .+..| +...+..+..
T Consensus 406 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~ 485 (987)
T PRK09782 406 QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAK 485 (987)
T ss_pred CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 222 233456667776665 3344333 11 1111 11223 3445555555
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChHHHH
Q 004733 496 SCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--KDTISWNALISAYAQHGEGKEAV 573 (733)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 573 (733)
++.. +...+|...+....... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|.
T Consensus 486 ~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 486 CYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred HHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHH
Confidence 5555 78888999777776554 4443333445555789999999999998763 44455667778889999999999
Q ss_pred HHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 574 SCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 574 ~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
..+++..+.. |+. ..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..
T Consensus 563 ~~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 563 RWLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999854 544 33444444556779999999999999965 6788889999999999999999999999876
Q ss_pred -CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 653 -IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 653 -~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
..|+ ...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|+..+++..+..+
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 5565 446677778899999999999999999999999999999999999999999999999999987654
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.5e-18 Score=173.22 Aligned_cols=654 Identities=13% Similarity=0.049 Sum_probs=435.3
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCC-CCcc-----cHHHHHHHHhccchh-----------hhhhhHHHHHH
Q 004733 22 LKLNISLANLSRSGHYQDALHLFVQIHSSHKLK-PDIY-----SLSTTLAACANLRNA-----------AFGNQLHAYAL 84 (733)
Q Consensus 22 ~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~-----~~~~ll~~~~~~~~~-----------~~a~~~~~~~~ 84 (733)
.+|...-..|.++|..++.+.+++.-....+.. .|.. .++.+...++..+.. ..+..+|...-
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 468888889999999999999998764221111 1111 122222223222211 12222222222
Q ss_pred HcccccCchhhHhHHHHHhhcc--ChHHHHHHHHhcCCCCcc-hhhHHHHHhh--ccCChhHHHHHhccCC--C----CC
Q 004733 85 RAGLKAYPHVANTILSLYKNAR--DLVSVKRVFSEIQNPDVY-SWTTFLSACT--KMGHVDYACEVFDKMP--D----RD 153 (733)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~-~~~~l~~~~~--~~g~~~~a~~~~~~~~--~----~~ 153 (733)
+-....++..+-.-.. |...| +++.|...|......++. ....+..++. ..+++..|+.+|.... . +|
T Consensus 122 ki~m~~~~~l~~~~~~-~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD 200 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGF-LLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD 200 (1018)
T ss_pred HhhccCcchhhhhhhh-hhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC
Confidence 2111112222222211 22222 257888888877654433 2333444544 5689999999998843 2 23
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHH--Hhh-----ccCchHHHHHHHHHHHHhCCCCchHHH
Q 004733 154 LPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVL--SVC-----DAGLLEFGRQLHSLVTKSGFSCLVSVV 226 (733)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~ 226 (733)
+. -.+..++.+.|+.+.|+..|.+..+. .| ...++++ ..+ ....+..+..++...-... +.++.+.
T Consensus 201 ~r--Igig~Cf~kl~~~~~a~~a~~ralqL--dp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l 273 (1018)
T KOG2002|consen 201 VR--IGIGHCFWKLGMSEKALLAFERALQL--DP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVAL 273 (1018)
T ss_pred cc--chhhhHHHhccchhhHHHHHHHHHhc--Ch--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHH
Confidence 32 22345677889999999999999884 34 3333333 222 3344555666655555443 4567778
Q ss_pred HHHHHHhHhcCChHHHHHHHHhhhcCC----CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHcc
Q 004733 227 NALITMYFNCGNVVDACKVFEEAKGYV----CDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACL 302 (733)
Q Consensus 227 ~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 302 (733)
+.|...|.-.|++..+..+...+.... --..+|-.+.++|...|++++|..+|.+..+. .|+..++.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~------- 344 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP------- 344 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc-------
Confidence 888888999999999999888754311 12345777889999999999999999877654 44443332
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcccHHHHHHHHHhcC----ChHHHHH
Q 004733 303 CPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--K-DIVSWNTMISTYAQRN----LGRSAIL 375 (733)
Q Consensus 303 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~ 375 (733)
+--+..+|.+.|+++.+...|+.+.. | +..+..++...|+..+ ..+.|..
T Consensus 345 -----------------------~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 345 -----------------------LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred -----------------------ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 13457889999999999999999876 3 3445555666666664 4466666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHhhcc------hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC-
Q 004733 376 AYLEMQSVGIRPDEFTFGSLLASSGF------IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS- 448 (733)
Q Consensus 376 ~~~~m~~~~~~p~~~~~~~ll~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 448 (733)
++.+..+.- ..|...|..+-..+.. ++.-....+.+...+-.+.+...|.+...+...|+++.|...|+...
T Consensus 402 ~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 402 VLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 666655532 2333444333222222 45555556666777777999999999999999999999999998764
Q ss_pred ------CCChh------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHh-HHHHHHHhcccCChHHHHHHHHHHHH
Q 004733 449 ------PRNII------TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYT-LSVALSSCARISSLRHGKQIHGYVLK 515 (733)
Q Consensus 449 ------~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~ 515 (733)
.++.. +-..+...+-..++.+.|.+.+..+.+. .|.-+. |..+.......+...+|...+.....
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 12221 2223444555667899999999999886 366443 33333333345778888888887776
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHH------------hcCChHHHHHHHHH
Q 004733 516 NNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE-----KDTISWNALISAYA------------QHGEGKEAVSCFKA 578 (733)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~ 578 (733)
.+ ..++..++.+...+.+..++.-|.+-|....+ +|..+.-+|.+.|. ..+..++|+++|.+
T Consensus 559 ~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 559 ID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred cc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 43 22344445566688888888888886666542 34444444555443 23467889999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC----CC
Q 004733 579 MQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH----IQ 654 (733)
Q Consensus 579 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 654 (733)
.+... +.|...-+.+...++..|++.+|..+|.++.+. ..-...+|-.+..+|..+|++-.|+++|+... ..
T Consensus 638 vL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~ 713 (1018)
T KOG2002|consen 638 VLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK 713 (1018)
T ss_pred HHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98854 445667777888889999999999999999987 34456788999999999999999999998755 45
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc-------------------CChHHHHHHHH
Q 004733 655 ARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA-------------------GLWEEAANIRE 715 (733)
Q Consensus 655 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~ 715 (733)
.+..+...|..++...|.+.+|...+..+....|.++.+.+.++.+..+. +..++|.++|+
T Consensus 714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~ 793 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFT 793 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999988887765543 35778889999
Q ss_pred HHHhCCCc
Q 004733 716 LLKRTGVI 723 (733)
Q Consensus 716 ~~~~~~~~ 723 (733)
+|..-+-+
T Consensus 794 ~ls~~~d~ 801 (1018)
T KOG2002|consen 794 ELSKNGDK 801 (1018)
T ss_pred HHHhcCCC
Confidence 98876654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-19 Score=174.81 Aligned_cols=442 Identities=16% Similarity=0.173 Sum_probs=317.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh--ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhH
Q 004733 157 YNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC--DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYF 234 (733)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 234 (733)
...|..-..+.|++.+|.+.-...-+.+ |...--..++++. +..+++...+.-....+.. +.-..+|+.+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4456667778899999988766654432 3333333344433 5555665554444333322 333567888888888
Q ss_pred hcCChHHHHHHHHhhhcCCC-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHH
Q 004733 235 NCGNVVDACKVFEEAKGYVC-DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQ 313 (733)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~ 313 (733)
..|++++|+..++.+.+++| .+..|..+..++...|+.+.|.+.|.+..+. .|+.....
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~------------------ 187 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCAR------------------ 187 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhh------------------
Confidence 99999999999999887777 5667888889999999999999998887764 34333221
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 004733 314 AMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--KD-IVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEF 390 (733)
Q Consensus 314 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 390 (733)
+.+-......|++.+|...+.+..+ |. ...|+.|...+-..|+...|+.-|++..+. .|+-.
T Consensus 188 -------------s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~ 252 (966)
T KOG4626|consen 188 -------------SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFL 252 (966)
T ss_pred -------------cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcch
Confidence 1122333456778888777776655 32 346788888888888888888888887763 33211
Q ss_pred hHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCC
Q 004733 391 TFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGF 467 (733)
Q Consensus 391 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 467 (733)
..|-.|.+.|...+.++.|...+.... +.....+..+...|-.+|.
T Consensus 253 -------------------------------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 253 -------------------------------DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred -------------------------------HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecccc
Confidence 112345555666666666666555432 2233445555555556666
Q ss_pred chHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004733 468 PVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNM 547 (733)
Q Consensus 468 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 547 (733)
.+.|+..+++.++.. |+ -+..|+.+..++-..|++.+|...|++
T Consensus 302 ldlAI~~Ykral~~~--P~----------------------------------F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQ--PN----------------------------------FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHHHHHhcC--CC----------------------------------chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 666666666655532 33 234567778888888888888888888
Q ss_pred cCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 004733 548 MIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP 623 (733)
Q Consensus 548 ~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p 623 (733)
... | ...+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-++|++++|+..|++.+ .+.|
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P 419 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKP 419 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCc
Confidence 763 3 455778899999999999999999999998 77875 568999999999999999999999998 5788
Q ss_pred C-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 624 A-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 624 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
+ .+.++.+...|...|+.+.|...+.+.. ..|. ......|...|...|+..+|++.|+.++++.|+.+.++..++.+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 8 4589999999999999999999998766 6665 44778899999999999999999999999999999999999877
Q ss_pred HHhcCChHH
Q 004733 701 YAAAGLWEE 709 (733)
Q Consensus 701 ~~~~g~~~~ 709 (733)
+---.+|.+
T Consensus 500 lq~vcdw~D 508 (966)
T KOG4626|consen 500 LQIVCDWTD 508 (966)
T ss_pred HHHHhcccc
Confidence 665554443
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.4e-17 Score=164.08 Aligned_cols=632 Identities=11% Similarity=0.069 Sum_probs=389.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccc----cC---chhhHhHHHHHhhccC
Q 004733 35 GHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLK----AY---PHVANTILSLYKNARD 107 (733)
Q Consensus 35 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~---~~~~~~l~~~~~~~~~ 107 (733)
-+..+.+.++... ...-++|..+...|..+|..++...+++.-....-. +. ...++.+...+...+.
T Consensus 25 PD~~ev~~IL~~e------~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~ 98 (1018)
T KOG2002|consen 25 PDATEVLSILKAE------QAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAM 98 (1018)
T ss_pred CChHHHHHHHHHh------cCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 234567888888899999998888877775511111 11 1122222222212111
Q ss_pred hH-----------HHHHHHHhc-----CCCCcchhhHHHHHhhccCC--hhHHHHHhccCCCCChh-hHHHHHHH--Hhh
Q 004733 108 LV-----------SVKRVFSEI-----QNPDVYSWTTFLSACTKMGH--VDYACEVFDKMPDRDLP-VYNAMITG--CTE 166 (733)
Q Consensus 108 ~~-----------~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~-~~~~li~~--~~~ 166 (733)
.. .|...|... ..+....+... .|...|+ ++.|.+.|..+.+.+.. +...+..+ ...
T Consensus 99 kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~yn 176 (1018)
T KOG2002|consen 99 KEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYN 176 (1018)
T ss_pred HHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhc
Confidence 11 111111111 00111111111 1112222 46666666665532221 12222232 334
Q ss_pred cCChhHHHHHHHHHHHc--CCCCChhhHHHHHHhh--ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCC---h
Q 004733 167 NGYEDIGIGLFREMHKL--DVRRDNYSFASVLSVC--DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGN---V 239 (733)
Q Consensus 167 ~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~ 239 (733)
.|++..|+.+|...... ...||+. +.+..| +.|+.+.|+..|....+.+. .++.++-.|...-....+ +
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~r---Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVR---IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCcc---chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHH
Confidence 56777777777775442 2223322 223344 66777777777777766542 222232222222222222 3
Q ss_pred HHHHHHHHhhhcCC-CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhC
Q 004733 240 VDACKVFEEAKGYV-CDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSG 318 (733)
Q Consensus 240 ~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g 318 (733)
..+...+...-... -|+...+.|.+.+.-.|++..++.+...+...... .
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~-------~---------------------- 303 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN-------K---------------------- 303 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh-------h----------------------
Confidence 44444444433222 35666677777777777777777777766654210 0
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CC--cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 004733 319 FEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--KD--IVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGS 394 (733)
Q Consensus 319 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 394 (733)
..-...|--+.++|-..|++++|...|.+..+ +| +..+-.+.+.|.+.|+.+.+...|+..... .|+..--..
T Consensus 304 -~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~ 380 (1018)
T KOG2002|consen 304 -SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMK 380 (1018)
T ss_pred -HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHH
Confidence 01122345567889999999999999988776 33 344566788999999999999999998874 455433333
Q ss_pred HHHh-hcc-------hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCChhhHHHH
Q 004733 395 LLAS-SGF-------IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNM--------SPRNIITWNTL 458 (733)
Q Consensus 395 ll~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~l 458 (733)
++.. +.. .+.+..+.....+.- +.|...|-.+...+....- ..++..+... .+..+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 3322 222 233333333333322 3455555555555544333 3224444332 24566788999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHC---CCCCCH------HhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 004733 459 INGFLLNGFPVQGLQHFSELLMS---ELRPDE------YTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMI 529 (733)
Q Consensus 459 i~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 529 (733)
...+...|++.+|...|...... ...+|. .+--.+.......++.+.|.+.|..+.+.. -..|
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------p~YI 530 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------PGYI 530 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------chhH
Confidence 99999999999999999988765 223333 122234455566789999999999988754 2244
Q ss_pred HHHHhc-------CCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 004733 530 TLYAKC-------GDLDCSLRVFNMMI---EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSAC 599 (733)
Q Consensus 530 ~~~~~~-------~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 599 (733)
++|.+. +...+|...++... +.++..+..+...+.....+..|.+-|....+.-...+|..+...|.+.|
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 444444 56778888888776 35677888888888888899999988887766542346666666666655
Q ss_pred hc------------cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHH
Q 004733 600 SH------------AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFS 665 (733)
Q Consensus 600 ~~------------~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 665 (733)
.. .+..++|+++|.++++. -+-+...-+-+.-+++..|++.+|..+|.++. .....++|..+..
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah 688 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAH 688 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHH
Confidence 32 23567788888888764 34456677888899999999999999999887 3445678999999
Q ss_pred HHHhhCCHHHHHHHHHHHhccC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 666 ACAAHGNLRLGRIIAGLLLERE--QDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 666 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+|...|++..|+++|+.+++.. .+++.+...|+.++++.|++.+|.+.+...+..-+
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999965 45778899999999999999999999987776544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.4e-18 Score=183.35 Aligned_cols=250 Identities=12% Similarity=0.037 Sum_probs=185.7
Q ss_pred CCchHHHHHHHHHHHCC-CCCC-HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004733 466 GFPVQGLQHFSELLMSE-LRPD-EYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLR 543 (733)
Q Consensus 466 ~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 543 (733)
+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++...+... .....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 55666777777666653 2232 23455555556667777777777776665431 224456677777888899999999
Q ss_pred HHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 544 VFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 544 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
.|++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+...+.+.|++++|...+++..+.
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL---DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 8887753 35667888888899999999999999999884 454 556777778888999999999999998865
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCCh-hh-------HHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 004733 620 GFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARS-DN-------WWALFSACAAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
.+.+...+..+..++...|++++|++.|++.. ..|+. .. +...+..+...|++++|...++++++++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 23346688888999999999999999998755 44432 11 1112222344699999999999999999999
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 691 PSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
..++..++++|...|++++|+++|++..+..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887653
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.6e-19 Score=185.13 Aligned_cols=295 Identities=13% Similarity=0.067 Sum_probs=241.5
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HHhHHHHHHHhcccCC
Q 004733 429 SAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPD---EYTLSVALSSCARISS 502 (733)
Q Consensus 429 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~ 502 (733)
..+...|++++|...|.++. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34567899999999999986 33456788899999999999999999999987643222 2457788888999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--------hhHHHHHHHHHhcCChHHHHH
Q 004733 503 LRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDT--------ISWNALISAYAQHGEGKEAVS 574 (733)
Q Consensus 503 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~ 574 (733)
+++|..+++.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.++ ..+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998753 34577888999999999999999999999864221 134567778889999999999
Q ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-
Q 004733 575 CFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH- 652 (733)
Q Consensus 575 ~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 652 (733)
.|+++.+.. |+ ...+..+...+.+.|++++|.++++++.+. +.......+..++.+|.+.|++++|...++++.
T Consensus 202 ~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 202 LLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999843 44 557778888999999999999999999865 222224567889999999999999999999876
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCcCCCcc
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA--AGLWEEAANIRELLKRTGVIKQPGC 728 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~ 728 (733)
..|+...+..++..+.+.|++++|...++++.+..|++......+...+.. .|+.++|..++++|.+++++++|++
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 677777778888899999999999999999999999987655444433322 5699999999999999999999973
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2.9e-18 Score=165.50 Aligned_cols=358 Identities=15% Similarity=0.193 Sum_probs=281.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhh
Q 004733 323 TSVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASS 399 (733)
Q Consensus 323 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 399 (733)
..+|+.+.+.+-..|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~------ 187 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCAR------ 187 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhh------
Confidence 34556677788888889999988888776 3567788888899999999999999888876 455544432
Q ss_pred cchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCC-hhhHHHHHHHHHhCCCchHHHHHHH
Q 004733 400 GFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS--PRN-IITWNTLINGFLLNGFPVQGLQHFS 476 (733)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 476 (733)
+.+.+..-..|++.+|...+.+.. .|. .+.|+.|...+-.+|+...|++.|+
T Consensus 188 -------------------------s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~ 242 (966)
T KOG4626|consen 188 -------------------------SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYE 242 (966)
T ss_pred -------------------------cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHH
Confidence 223344445677777777666554 232 3577888888888888888888888
Q ss_pred HHHHCCCCCC-HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-
Q 004733 477 ELLMSELRPD-EYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--KD- 552 (733)
Q Consensus 477 ~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~- 552 (733)
+.... .|+ ...|-.+-..+...+.+++|..-+.+..... +.....+..+.-.|...|.+|-|+..|++..+ |+
T Consensus 243 eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F 319 (966)
T KOG4626|consen 243 EAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF 319 (966)
T ss_pred HhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence 87764 344 2345556666666666666666665554322 12244455566678889999999999999874 43
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 004733 553 TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSC 630 (733)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 630 (733)
+..|+.|..++-..|+..+|...+.+... +.|+. ...+.|...|...|.+++|..+|....+ +.|. ....+.
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nN 393 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNN 393 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhh
Confidence 46899999999999999999999999998 55764 5788999999999999999999999985 4666 457889
Q ss_pred HHHHhhhcCChHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChH
Q 004733 631 MLDLLGRAGYLDEAERVINSQH-IQARS-DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWE 708 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 708 (733)
|...|..+|++++|+..+++.. +.|.. +.+..+...|-..|+.+.|.+.+.++...+|.-+.++..|+.+|-..|+..
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence 9999999999999999998766 77774 478899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 004733 709 EAANIRELLKRTGV 722 (733)
Q Consensus 709 ~A~~~~~~~~~~~~ 722 (733)
+|+.-+++..+..+
T Consensus 474 ~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 474 EAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHccCC
Confidence 99999998887543
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.85 E-value=3.2e-17 Score=164.89 Aligned_cols=656 Identities=13% Similarity=0.053 Sum_probs=322.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHHhhccChHHHHHHH
Q 004733 36 HYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYKNARDLVSVKRVF 115 (733)
Q Consensus 36 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 115 (733)
.-.....++..+ +..|+.|+..||..+|..||..|+.+.|. ++..|.-...+....+|+.++..+...++.+.++
T Consensus 5 ~kf~ptnfla~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 5 VKFFPTNFLALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--- 79 (1088)
T ss_pred cccCcchHHHHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---
Confidence 333445677788 55699999999999999999999999999 9999999999999999999999999999988876
Q ss_pred HhcCCCCcchhhHHHHHhhccCChhHHHHHhcc----CCC---C-C------------------hhhHHHHHHHHhhcCC
Q 004733 116 SEIQNPDVYSWTTFLSACTKMGHVDYACEVFDK----MPD---R-D------------------LPVYNAMITGCTENGY 169 (733)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~---~-~------------------~~~~~~li~~~~~~~~ 169 (733)
+|.+.+|+.|..+|.+.||+.. .+..++ +.. + + ...-...+....-.|.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL 154 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH
Confidence 7899999999999999999766 222222 110 0 0 0001112222223333
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHhh--ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHH
Q 004733 170 EDIGIGLFREMHKLDVRRDNYSFASVLSVC--DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFE 247 (733)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 247 (733)
++.+++++..+....- + .++...++-+ ....+++-..+.+...+ .|++.++..+++.-..+|+.+.|..++.
T Consensus 155 waqllkll~~~Pvsa~--~-~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAW--N-APFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHhhCCcccc--c-chHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3444443333322110 0 0111113222 22223222222222221 3455555555555555555555555555
Q ss_pred hhhc--CCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHH
Q 004733 248 EAKG--YVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSV 325 (733)
Q Consensus 248 ~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~ 325 (733)
+|++ +.-+..-|-.|+-+ .++...+..+++-|...|+.|+..|+...+-.+..... -...+.|.+.+...
T Consensus 229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~-----t~~~~e~sq~~hg~ 300 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ-----TKYGEEGSQLAHGF 300 (1088)
T ss_pred HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh-----hhhcccccchhhhh
Confidence 5542 21122222222222 44455555555555555555555555444433332000 00001111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh---------ccc-------CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC
Q 004733 326 SNAAITMYSSCGKIDEACMIFAR---------LQE-------KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVG--IRP 387 (733)
Q Consensus 326 ~~~li~~~~~~g~~~~a~~~~~~---------~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p 387 (733)
-..+....+ .| ..|.+.++. .++ ....+|.. ..-...+|.-+.+.++...|...- ..+
T Consensus 301 tAavrsaa~-rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 301 TAAVRSAAC-RG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hHHHHHHHh-cc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCc
Confidence 111111111 11 112221111 111 00111211 111222455555555555543321 111
Q ss_pred C-hhhHHHHHHhhcc-hH--HHHHHHHHHHHhCCccc--hhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCh-----
Q 004733 388 D-EFTFGSLLASSGF-IE--MVEMIHAFVFINGIITN--IQVSNALISAYAKNERIKQAYQIFHNMS----PRNI----- 452 (733)
Q Consensus 388 ~-~~~~~~ll~~~~~-~~--~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----- 452 (733)
+ ...|...+..+=+ .+ ....++. ...|+..+ ....-.+.....+. +...+.+-+..+. .+..
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~ 453 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPL 453 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchh
Confidence 1 1112211111100 00 0000000 00111110 00000111111111 1111111111111 0000
Q ss_pred ------hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHH--cCCCCchhH
Q 004733 453 ------ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLK--NNLISKMSL 524 (733)
Q Consensus 453 ------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 524 (733)
..-+.++..++..-+..+++..-++....-+. ..|..+++-++.....+.|..+.+++.. ..+..+..-
T Consensus 454 ~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 454 IAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 12344555666655555555444443332211 5678888888888888888888887764 344566777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------
Q 004733 525 GNAMITLYAKCGDLDCSLRVFNMMIE-----KD-TISWNALISAYAQHGEGKEAVSCFKAMQDVG--------------- 583 (733)
Q Consensus 525 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------- 583 (733)
+..+.+...+.+....+..++.++.+ +. ..++--++...+..|+.+...++++-+...|
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkd 610 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKD 610 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeecc
Confidence 78888888888888888888888764 11 1122233444445555555555555444333
Q ss_pred --------------CCCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHhHh---------------hcCC-----------
Q 004733 584 --------------RIKPDQATFTAVLSACS--HAGLVDDGTRIFDSMVN---------------DYGF----------- 621 (733)
Q Consensus 584 --------------~~~p~~~~~~~ll~~~~--~~~~~~~A~~~~~~~~~---------------~~~~----------- 621 (733)
..+|.+.....+.+.+. ...+++.+..+-..+.. -.|+
T Consensus 611 d~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~d 690 (1088)
T KOG4318|consen 611 DQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTD 690 (1088)
T ss_pred chhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccc
Confidence 02333333333333222 11223333222111110 0010
Q ss_pred ----CC---------CchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhC---CHHHHHHHHHHHhc
Q 004733 622 ----IP---------AEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHG---NLRLGRIIAGLLLE 685 (733)
Q Consensus 622 ----~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 685 (733)
.| +......|+..|.+.|+++.|..++.+++..|.+.....++..+.+.. |+.++....+++.+
T Consensus 691 e~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~ 770 (1088)
T KOG4318|consen 691 EGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASE 770 (1088)
T ss_pred cCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHh
Confidence 00 011123467788899999999999999998888888888877776543 67778888888888
Q ss_pred cCCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCcCC
Q 004733 686 REQDKPSV---YVLLSNIYAAAGLWEEAANIRELLKRTGVIKQ 725 (733)
Q Consensus 686 ~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 725 (733)
..|..+.. +.-.+.....-.+.+.|.+.+.+..++....+
T Consensus 771 ~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~t 813 (1088)
T KOG4318|consen 771 LRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVST 813 (1088)
T ss_pred cccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCc
Confidence 77665543 33333333344455578888988888754443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.9e-16 Score=173.77 Aligned_cols=402 Identities=10% Similarity=0.049 Sum_probs=257.7
Q ss_pred CCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCC-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004733 220 SCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVC-DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVM 298 (733)
Q Consensus 220 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 298 (733)
+.++......+......|+.++|++++.+.....| +...+..+...+.+.|++++|..++++.... .|+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~------- 82 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQN------- 82 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-------
Confidence 34455556667777778888888888887664323 3445777778888888888888888887664 2322
Q ss_pred HHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcccHHHHHHHHHhcCChHHHHH
Q 004733 299 SACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--K-DIVSWNTMISTYAQRNLGRSAIL 375 (733)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 375 (733)
......+..++...|++++|...++++.. | +.. +..+...+...|+.++|+.
T Consensus 83 ------------------------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 83 ------------------------DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred ------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 22234455667778888888888888765 3 344 7777778888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--
Q 004733 376 AYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNII-- 453 (733)
Q Consensus 376 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 453 (733)
.++++.+. .|+.... +..+..++...+..+.|++.++.... ++.
T Consensus 138 ~l~~al~~--~P~~~~~-------------------------------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~ 183 (765)
T PRK10049 138 AMTQALPR--APQTQQY-------------------------------PTEYVQALRNNRLSAPALGAIDDANL-TPAEK 183 (765)
T ss_pred HHHHHHHh--CCCCHHH-------------------------------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHH
Confidence 88888774 3443222 13345566677778888887776653 211
Q ss_pred ------hHHHHHHHHHh-----CCCc---hHHHHHHHHHHHC-CCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCC
Q 004733 454 ------TWNTLINGFLL-----NGFP---VQGLQHFSELLMS-ELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNL 518 (733)
Q Consensus 454 ------~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 518 (733)
....++..... .+++ ++|+..++.+.+. ...|+.... .
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~--~------------------------- 236 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD--Y------------------------- 236 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH--H-------------------------
Confidence 11111111111 1111 3444444444432 111211100 0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-----H
Q 004733 519 ISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD---TI-SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-----Q 589 (733)
Q Consensus 519 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-----~ 589 (733)
.......+..+...|++++|+..|+.+.+.+ +. .-..+..+|...|++++|+..|+++.+.. |. .
T Consensus 237 ---~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~---p~~~~~~~ 310 (765)
T PRK10049 237 ---QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP---ETIADLSD 310 (765)
T ss_pred ---HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC---CCCCCCCh
Confidence 0000011223345577888888888876432 11 11224567778888888888888877633 32 2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcC----------CCCC---chHHHHHHHHhhhcCChHHHHHHHHhcC--CC
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYG----------FIPA---EDHLSCMLDLLGRAGYLDEAERVINSQH--IQ 654 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 654 (733)
.....+..++...|++++|.+.++.+..... -.|+ ...+..+...+...|++++|++.++++. .+
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455556677788888888888888875410 0122 1234567778888899999999988866 33
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 655 ARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 655 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.+...+..+...+...|++++|+..++++++.+|+++..+..++..+...|++++|..+++++.+..+
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 44556778888888899999999999999999999999999999889999999999999998887644
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=3.5e-17 Score=175.38 Aligned_cols=258 Identities=11% Similarity=0.091 Sum_probs=130.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccC
Q 004733 425 NALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARIS 501 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 501 (733)
..+...+...|++++|...++... +.+...+..+...+...|++++|...++.+.... |+.......+..+...|
T Consensus 114 ~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g 191 (656)
T PRK15174 114 LLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKS 191 (656)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcC
Confidence 344555556666666666665543 2334455555555666666666666665554433 22111111122344555
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHH----HHH
Q 004733 502 SLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKE----AVS 574 (733)
Q Consensus 502 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~ 574 (733)
++++|...++.+.+....++......+...+...|++++|...++.... .+...+..+...+...|++++ |..
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 6666665555554443222333333344455555666666655555542 123344455555555555553 555
Q ss_pred HHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 575 CFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 575 ~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
.|+++.+ ..|+ ...+..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|...++++.
T Consensus 272 ~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 272 HWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555 2233 334555555555556666666666655543 233 3344445555555666666665555544
Q ss_pred -CCCChhhH-HHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 004733 653 -IQARSDNW-WALFSACAAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 653 -~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
..|+...+ ..+..++...|++++|+..++++.+..|++
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 33443222 223344555566666666666666655554
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.3e-17 Score=170.84 Aligned_cols=300 Identities=13% Similarity=0.087 Sum_probs=209.5
Q ss_pred HHhHhcCChHHHHHHHHhhhcCCCC-ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHH
Q 004733 231 TMYFNCGNVVDACKVFEEAKGYVCD-HISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQ 309 (733)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 309 (733)
..+...|++++|...|+++....|+ ..++..+...+.+.|++++|..+++.+...+..++...
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---------------- 106 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQR---------------- 106 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHH----------------
Confidence 3455778888888888887766664 44678888888889999999998888876432221111
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004733 310 VHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIR 386 (733)
Q Consensus 310 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 386 (733)
...+..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+..
T Consensus 107 -------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 107 -------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 12345667888888999999999988876 45567888899999999999999999998875433
Q ss_pred CChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHH
Q 004733 387 PDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFL 463 (733)
Q Consensus 387 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 463 (733)
+...... ..+..+...+.+.|++++|...|+++. +.+...+..+...+.
T Consensus 174 ~~~~~~~----------------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 225 (389)
T PRK11788 174 SLRVEIA----------------------------HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL 225 (389)
T ss_pred cchHHHH----------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH
Confidence 3221110 112345566777788888877777764 223445666667777
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004733 464 LNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLR 543 (733)
Q Consensus 464 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 543 (733)
+.|++++|.+.++++...+ |+. ...+++.++.+|.+.|++++|.+
T Consensus 226 ~~g~~~~A~~~~~~~~~~~--p~~---------------------------------~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQD--PEY---------------------------------LSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred HCCCHHHHHHHHHHHHHHC--hhh---------------------------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776543 221 12233556667777777777777
Q ss_pred HHHhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhHhh
Q 004733 544 VFNMMI--EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH---AGLVDDGTRIFDSMVND 618 (733)
Q Consensus 544 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~~ 618 (733)
.++++. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++.++
T Consensus 271 ~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 271 FLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 777765 35555567777888888888888888888877 45888888777776553 45788888888888877
Q ss_pred cCCCCCch
Q 004733 619 YGFIPAED 626 (733)
Q Consensus 619 ~~~~p~~~ 626 (733)
++.|++.
T Consensus 348 -~~~~~p~ 354 (389)
T PRK11788 348 -QLKRKPR 354 (389)
T ss_pred -HHhCCCC
Confidence 7777766
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=7.2e-17 Score=173.01 Aligned_cols=348 Identities=8% Similarity=-0.032 Sum_probs=253.9
Q ss_pred hcCCHHHHHHHHHhccc------CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHH
Q 004733 335 SCGKIDEACMIFARLQE------KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMI 408 (733)
Q Consensus 335 ~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 408 (733)
+..+++.---+|..-.+ .+......++..+.+.|++++|+.+++........+....+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~---------------- 80 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR---------------- 80 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH----------------
Confidence 44444444444444433 23344556677788888888888888888775444433333
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 004733 409 HAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRP 485 (733)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 485 (733)
.++.+....|+++.|...++.+. +.+...+..+...+...|++++|...+++..... +.
T Consensus 81 -----------------~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~ 142 (656)
T PRK15174 81 -----------------RWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SG 142 (656)
T ss_pred -----------------HHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 34445566888888888888875 4455677888888889999999999999888753 23
Q ss_pred CHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhhHHHHHH
Q 004733 486 DEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEK----DTISWNALIS 561 (733)
Q Consensus 486 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~ 561 (733)
+...+..+...+...|+.++|...++.+......+... +..+ ..+...|++++|...++.+.+. +...+..+..
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a-~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM-IATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD 220 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH-HHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 35566777888888999999999888776654433332 2223 3467789999999988887643 2233444567
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHhHhhcCCCCC-chHHHHHHHHhh
Q 004733 562 AYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDD----GTRIFDSMVNDYGFIPA-EDHLSCMLDLLG 636 (733)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 636 (733)
++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...++++.+. .|+ ...+..+...+.
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHH
Confidence 7888899999999999988754 3345567777888888888885 78888888865 444 557888888999
Q ss_pred hcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 004733 637 RAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 637 ~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (733)
+.|++++|...+++.. ..|+ +..+..+..++...|++++|+..++++.+..|+++..+..++.++...|+.++|...|
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998888766 4555 4456677778888999999999999999999988877777788888999999999999
Q ss_pred HHHHhCCCc
Q 004733 715 ELLKRTGVI 723 (733)
Q Consensus 715 ~~~~~~~~~ 723 (733)
+++.+..++
T Consensus 376 ~~al~~~P~ 384 (656)
T PRK15174 376 EHYIQARAS 384 (656)
T ss_pred HHHHHhChh
Confidence 888776554
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.1e-16 Score=148.93 Aligned_cols=484 Identities=13% Similarity=0.107 Sum_probs=326.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHh-h-ccCchHHHHHHHHHHHHhCCCCc----hHHHHHHHHH
Q 004733 159 AMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSV-C-DAGLLEFGRQLHSLVTKSGFSCL----VSVVNALITM 232 (733)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~-~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~ 232 (733)
.|.+-|..+....+|+..|+...++...|+....-.-+.- + +.+++..|.++++..+..-...+ +.+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3445666677889999999999999999998876666644 4 88999999999998876532222 3345556667
Q ss_pred hHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHH
Q 004733 233 YFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHA 312 (733)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~ 312 (733)
+.+.|.++.|+..|+......||..+--.|+-++..-|+.++..+.|..|..-...||...|..
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~---------------- 349 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK---------------- 349 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC----------------
Confidence 8899999999999999877779887755566667778999999999999998777777766611
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-
Q 004733 313 QAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFT- 391 (733)
Q Consensus 313 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~- 391 (733)
..-.|+....+..+. .. .++.|.+.+ ..+.++++-.--++...-+.|+-..
T Consensus 350 ----~~ddp~~~ll~eai~----nd-------~lk~~ek~~-------------ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 350 ----EKDDPDDNLLNEAIK----ND-------HLKNMEKEN-------------KADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred ----CcCCcchHHHHHHHh----hH-------HHHHHHHhh-------------hhhHHHHHHHHHHHhccccccchhcc
Confidence 111222222222221 10 111111100 0011122222222222222222110
Q ss_pred HHH---HHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH-----HHHHH
Q 004733 392 FGS---LLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTL-----INGFL 463 (733)
Q Consensus 392 ~~~---ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~ 463 (733)
+.. .+.+..+.+.+.. .. -.-..-+.+.|+++.|.++++-....|..+-++- +.-|.
T Consensus 402 ~dwcle~lk~s~~~~la~d-------------le--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~fl 466 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAID-------------LE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFL 466 (840)
T ss_pred cHHHHHHHHHhhhhhhhhh-------------hh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHH
Confidence 000 0000000010000 00 1122357789999999999988875554432222 12223
Q ss_pred h-CCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004733 464 L-NGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSL 542 (733)
Q Consensus 464 ~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 542 (733)
+ ..++..|.++-+..+... +-+......--+.....|++++|.+.+.+.....-.-....||. .-.+...|++++|+
T Consensus 467 qggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeal 544 (840)
T KOG2003|consen 467 QGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEAL 544 (840)
T ss_pred hcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHH
Confidence 3 235666666666554432 23333333333344567999999999999988765555555553 23456789999999
Q ss_pred HHHHhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 543 RVFNMMI---EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 543 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
+.|-++. ..+......+...|-...++..|++++-+.... ++.|+....-|...|-+.|+...|.+.+-.--+-
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyry- 621 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY- 621 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-
Confidence 9988764 467777788888999999999999999888773 4556778889999999999999999987766543
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHHH-HhhCCHHHHHHHHHHHhccCCCCchHHHHH
Q 004733 620 GFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWALFSAC-AAHGNLRLGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
++-+.++...|...|....-+++|+.+|++.. ..|+..-|..++..| .+.|++++|..+++......|.+...+..|
T Consensus 622 -fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 622 -FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred -cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 56678899999999999999999999999877 899999998887765 578999999999999999999999999999
Q ss_pred HHHHHhcCCh
Q 004733 698 SNIYAAAGLW 707 (733)
Q Consensus 698 ~~~~~~~g~~ 707 (733)
..+....|-.
T Consensus 701 vri~~dlgl~ 710 (840)
T KOG2003|consen 701 VRIAGDLGLK 710 (840)
T ss_pred HHHhccccch
Confidence 9998888853
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1.6e-15 Score=163.60 Aligned_cols=423 Identities=12% Similarity=0.021 Sum_probs=235.7
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhH
Q 004733 156 VYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYF 234 (733)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 234 (733)
.+......+.+.|++++|+..|++..+ +.|+...|..+-..+ ..|+++.|...+...++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 345666777888888888888888776 345655444444444 6677777777777766653 233456666666777
Q ss_pred hcCChHHHHHHHHhhhcCCC-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHH
Q 004733 235 NCGNVVDACKVFEEAKGYVC-DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQ 313 (733)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~ 313 (733)
..|++++|...|.......+ +......++..+.. ..+........+.. .++...+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~------------------- 261 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSV------------------- 261 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCH-------------------
Confidence 77777777666654432211 11111111111111 11111111111110 0000000
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCc---ccHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CC
Q 004733 314 AMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDI---VSWNTMIST---YAQRNLGRSAILAYLEMQSVG-IR 386 (733)
Q Consensus 314 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~-~~ 386 (733)
.. +..|...........-+......+. ..+..+... ....+++++|+..|++....+ ..
T Consensus 262 -------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 262 -------------TF-VGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred -------------HH-HHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 00 0001111111111111111111010 111111111 122356777777777766543 12
Q ss_pred CChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHH
Q 004733 387 PDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFL 463 (733)
Q Consensus 387 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 463 (733)
|+.. ..+..+...+...|++++|...|+... +.+...|..+...+.
T Consensus 328 ~~~a-------------------------------~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 328 EKEA-------------------------------IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL 376 (615)
T ss_pred hhhH-------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 2211 122445556666777777777776654 222345566666666
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004733 464 LNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLR 543 (733)
Q Consensus 464 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 543 (733)
..|++++|...|++.++.. |+ +..++..+...+...|++++|..
T Consensus 377 ~~g~~~eA~~~~~~al~~~--p~----------------------------------~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLN--SE----------------------------------DPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC--CC----------------------------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665542 22 23445566667777788888888
Q ss_pred HHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 544 VFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 544 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
.|++..+ | +...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...|++..+.
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l- 496 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL- 496 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-
Confidence 8777753 3 3455666777888888888888888888773 344 566777788888888888888888888754
Q ss_pred CCCCCc-h-------HHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 620 GFIPAE-D-------HLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 620 ~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
.|+. . .++.....+...|++++|.+++++.. ..|+.. .+..+...+...|++++|+..++++.++.+.
T Consensus 497 --~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 497 --EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred --CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 3321 1 11122223344688888888888754 455443 5777888888899999999999998888776
Q ss_pred Cch
Q 004733 690 KPS 692 (733)
Q Consensus 690 ~~~ 692 (733)
...
T Consensus 575 ~~e 577 (615)
T TIGR00990 575 EGE 577 (615)
T ss_pred HHH
Confidence 544
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=4.3e-16 Score=170.97 Aligned_cols=402 Identities=11% Similarity=0.076 Sum_probs=234.5
Q ss_pred HHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCC-CccchHHHHHHHHhc
Q 004733 192 FASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVC-DHISYNVMMDGLASV 269 (733)
Q Consensus 192 ~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 269 (733)
..-.+.+. ..|+.++|.+++....... +.+...+..+...+.+.|++++|.+++++.....| +...+..+...+...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 33334444 5566666666655555422 33344456666666666666666666666554444 334455555666666
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004733 270 GRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARL 349 (733)
Q Consensus 270 g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 349 (733)
|++++|+..+++..+. .|+... +..+..++...|+.++|...++++
T Consensus 97 g~~~eA~~~l~~~l~~--~P~~~~--------------------------------~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 97 GQYDEALVKAKQLVSG--APDKAN--------------------------------LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHH--------------------------------HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777666666554 222211 233344556666677777666666
Q ss_pred cc--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHH
Q 004733 350 QE--K-DIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNA 426 (733)
Q Consensus 350 ~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (733)
.+ | +...+..+...+...+..++|+..++.... .|+.... +.. .....
T Consensus 143 l~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~---l~~-----------------------~~~~~ 193 (765)
T PRK10049 143 LPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRD---LEA-----------------------DAAAE 193 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHH---HHH-----------------------HHHHH
Confidence 55 2 333444556666667777777776665442 2321000 000 00001
Q ss_pred HHHHH-----HhcCCH---HHHHHHHhhcC---C--CChh-hH----HHHHHHHHhCCCchHHHHHHHHHHHCCCC-CCH
Q 004733 427 LISAY-----AKNERI---KQAYQIFHNMS---P--RNII-TW----NTLINGFLLNGFPVQGLQHFSELLMSELR-PDE 487 (733)
Q Consensus 427 l~~~~-----~~~g~~---~~A~~~~~~~~---~--~~~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~ 487 (733)
++... ...+++ ++|++.++.+. + |+.. .+ ...+..+...|+.++|+..|+.+.+.+.. |+.
T Consensus 194 ~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~ 273 (765)
T PRK10049 194 LVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW 273 (765)
T ss_pred HHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH
Confidence 11111 112223 55666666554 1 2111 11 11133455678889999999988876522 332
Q ss_pred HhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhhHHHHH
Q 004733 488 YTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD-------TISWNALI 560 (733)
Q Consensus 488 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~ 560 (733)
.. . .+...|...|++++|+..|+++.+.+ ......+.
T Consensus 274 a~-~-----------------------------------~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 274 AQ-R-----------------------------------WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HH-H-----------------------------------HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11 1 12334555555555555555543211 12234445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchH
Q 004733 561 SAYAQHGEGKEAVSCFKAMQDVGR----------IKPDQ---ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDH 627 (733)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~----------~~p~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~ 627 (733)
.++...|++++|.++++++.+... -.|+. ..+..+...+...|++++|++.++++... .+.+...
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l 395 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGL 395 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 556667777777777777665320 12332 23455666888899999999999999865 3444668
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHH
Q 004733 628 LSCMLDLLGRAGYLDEAERVINSQH-IQARS-DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYV 695 (733)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 695 (733)
+..++.++...|++++|++.+++.. ..|+. ..+...+..+...|++++|+..++++.+..|+++.+..
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8888999999999999999999876 55664 45566667788999999999999999999999987644
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=1.5e-13 Score=139.95 Aligned_cols=589 Identities=12% Similarity=0.048 Sum_probs=390.4
Q ss_pred HHHHHhhccChHHHHHHHHhcCCC---CcchhhHHHHHhhccCChhHHHHHhcc---CCCCChhhHHHHHHHHhhcCChh
Q 004733 98 ILSLYKNARDLVSVKRVFSEIQNP---DVYSWTTFLSACTKMGHVDYACEVFDK---MPDRDLPVYNAMITGCTENGYED 171 (733)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~~~~~ 171 (733)
..+.+...|++++|.+++.+.+.. .+..|..|...|-.+|+.+++...+-. +...|..-|-.+..-..+.|+++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 344455569999999999998763 456899999999999999999887643 33457788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHH----HHHhHhcCChHHHHHH
Q 004733 172 IGIGLFREMHKLDVRRDNY-SFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNAL----ITMYFNCGNVVDACKV 245 (733)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~-~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~ 245 (733)
+|.-+|.+..+.. |+.. .+---...| +.|+...|..-+.++.+...+.|..-...+ ++.+...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998853 4432 222223556 899999999999999987654443333333 4446667777888888
Q ss_pred HHhhhc---CCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH---------------------------H
Q 004733 246 FEEAKG---YVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTF---------------------------V 295 (733)
Q Consensus 246 ~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~---------------------------~ 295 (733)
++.... -.-+...++.++..+.+...++.+......+......+|..-+ .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 887543 2235567899999999999999999999888773222222211 1
Q ss_pred HHHHHcc--CchhHHHHHHHHHHhC--CCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc----CCcccHHHHHHHHHhc
Q 004733 296 SVMSACL--CPRVGYQVHAQAMKSG--FEAYTSVSNAAITMYSSCGKIDEACMIFARLQE----KDIVSWNTMISTYAQR 367 (733)
Q Consensus 296 ~ll~~~~--~~~~~~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~ 367 (733)
..+.... ..+....+........ ..-++..+..+.++|...|++++|+.+|..+.. .+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 1221111 4455556666666666 344667899999999999999999999999986 4667899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 004733 368 NLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNM 447 (733)
Q Consensus 368 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 447 (733)
|.++.|.+.|++.+.. .|+..-- -..|...+.+.|+.++|.+.+..+
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~-------------------------------Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDA-------------------------------RITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhh-------------------------------hhhHHHHHHhcCCHHHHHHHHhcc
Confidence 9999999999998873 3433211 135666777888888888888887
Q ss_pred CCCChh------------hHHHHHHHHHhCCCchHHHHHHHHHHHCC----------------------CCCCHHhHHHH
Q 004733 448 SPRNII------------TWNTLINGFLLNGFPVQGLQHFSELLMSE----------------------LRPDEYTLSVA 493 (733)
Q Consensus 448 ~~~~~~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------------------~~p~~~~~~~l 493 (733)
..||.. ..-.....+.+.|+.++=+.+...|+... ..-...+...+
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~ 589 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQI 589 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHH
Confidence 655521 11223345666777666444444443211 11122223333
Q ss_pred HHHhcccCChHHHHHHHH------HHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Chh----hH
Q 004733 494 LSSCARISSLRHGKQIHG------YVLKNNLISKM--SLGNAMITLYAKCGDLDCSLRVFNMMIEK-----DTI----SW 556 (733)
Q Consensus 494 l~~~~~~~~~~~a~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~----~~ 556 (733)
+.+-.+.++......-.. .-...+...+. ..+.-++..+++.+++++|+.+...+..- +.. .-
T Consensus 590 ~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~ 669 (895)
T KOG2076|consen 590 IRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQ 669 (895)
T ss_pred HHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHH
Confidence 333333333222221111 11112222221 34566778889999999999998887642 221 22
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 004733 557 NALISAYAQHGEGKEAVSCFKAMQDVGRI--KPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLD 633 (733)
Q Consensus 557 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 633 (733)
...+.+....+++..|...++.|+..-.+ .|.. ..|+...+...+.++-.--.+++...... ...-++........
T Consensus 670 ~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~-~~~~~~~l~~i~gh 748 (895)
T KOG2076|consen 670 FLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK-NKDDTPPLALIYGH 748 (895)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccCCcceeeeech
Confidence 34566777889999999999999875112 2322 34665666666666544444444444332 11111233333445
Q ss_pred HhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHH-HH----------hhCCHHHHHHHHHHHhccCCC--CchHHHHHHH
Q 004733 634 LLGRAGYLDEAERVINSQH-IQARSDNWWALFSA-CA----------AHGNLRLGRIIAGLLLEREQD--KPSVYVLLSN 699 (733)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~-~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 699 (733)
.+...+.+..|+..+-++- ..|+.+..+.+++. +. ++-..-++..++++..++... .-.+.+.+|.
T Consensus 749 ~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigR 828 (895)
T KOG2076|consen 749 NLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGR 828 (895)
T ss_pred hHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 5677888898988765544 67776655544433 11 222456788888888887754 6678999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC
Q 004733 700 IYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+|-..|-..-|..++++..+-.+
T Consensus 829 ayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 829 AYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHcccHHHHHHHHHHHhCCCc
Confidence 99999999999999999887643
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=7.9e-15 Score=157.38 Aligned_cols=433 Identities=11% Similarity=0.051 Sum_probs=262.1
Q ss_pred hhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchH-HH--HHHH
Q 004733 190 YSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYN-VM--MDGL 266 (733)
Q Consensus 190 ~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~l--i~~~ 266 (733)
..|...+..++.|+++.|...+++..+....-.+.++ .++..+...|+.++|+..+++... |+...+. .+ ...+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHH
Confidence 3466666667999999999999999887532222344 888888899999999999999774 6444433 33 4477
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHH
Q 004733 267 ASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIF 346 (733)
Q Consensus 267 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 346 (733)
...|++++|+++|+++.+. .|+. +.++..++..+...++.++|++.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~--dP~n-------------------------------~~~l~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKK--DPTN-------------------------------PDLISGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCC-------------------------------HHHHHHHHHHHhhcCCHHHHHHHH
Confidence 7889999999999999886 3332 223345577888999999999999
Q ss_pred HhcccCCcccHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHH
Q 004733 347 ARLQEKDIVSWNTMISTYAQ--RNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVS 424 (733)
Q Consensus 347 ~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (733)
+++...+......+..++.. .++..+|++.++++.+. .|+...+ +
T Consensus 160 ~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~-------------------------------~ 206 (822)
T PRK14574 160 TELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEV-------------------------------L 206 (822)
T ss_pred HHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHH-------------------------------H
Confidence 99987433332224444444 55665699999999885 3443332 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CChhhH------HHHHHHH-H----hCCC---chHHHHHHHHHHHC-CCCCC
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSP---RNIITW------NTLINGF-L----LNGF---PVQGLQHFSELLMS-ELRPD 486 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~------~~li~~~-~----~~~~---~~~a~~~~~~m~~~-~~~p~ 486 (733)
..+..++.+.|-...|.++...-+. +....+ ..+++.- . ...+ .+.|+.-++.+... +..|.
T Consensus 207 ~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~ 286 (822)
T PRK14574 207 KNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPE 286 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCc
Confidence 5677788899999999988887651 111111 1111100 0 0111 22344444444431 11232
Q ss_pred HHh-H----HHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---------
Q 004733 487 EYT-L----SVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD--------- 552 (733)
Q Consensus 487 ~~~-~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------- 552 (733)
... | .--+-++...+++.++.+.++.+...+.+....+-.++.++|...+++++|+.+|..+..++
T Consensus 287 ~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~ 366 (822)
T PRK14574 287 AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD 366 (822)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence 211 1 12334555566666666667666666655555555666667777777777777766654211
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----------CCCC--HH-HHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 553 TISWNALISAYAQHGEGKEAVSCFKAMQDVGR----------IKPD--QA-TFTAVLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~p~--~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
......|.-++...+++++|..+++++.+... -.|| -. .+..++..+...|++.+|.+.++++...
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~- 445 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST- 445 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 11234556666666677777777766665220 0111 11 2333444556666666666666666543
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 620 GFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
-+-|......+.+.+...|.+.+|++.++... ..|+.. .....+.++...|++++|..+.+.+.+..|+++.+
T Consensus 446 -aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 446 -APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 33345566666666666666666666665544 444433 33445555566666666666666666666666643
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.3e-14 Score=155.61 Aligned_cols=423 Identities=11% Similarity=0.021 Sum_probs=283.2
Q ss_pred HhHhcCChHHHHHHHHhhhcCCCCcc--chHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHH
Q 004733 232 MYFNCGNVVDACKVFEEAKGYVCDHI--SYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQ 309 (733)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 309 (733)
...+.|+++.|+..|++.....|+.. .+ .++..+...|+.++|+..+++.. .|+...+..+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~l------------ 105 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGL------------ 105 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHH------------
Confidence 35588888899999988877667652 34 77777888899999988888876 3333333222
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004733 310 VHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--K-DIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIR 386 (733)
Q Consensus 310 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 386 (733)
..+...|...|++++|.++|+++.+ | +...+..++..+...++.++|++.++++... .
T Consensus 106 -----------------lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--d 166 (822)
T PRK14574 106 -----------------ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--D 166 (822)
T ss_pred -----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--C
Confidence 2335567788899999999988876 2 4455667777888888899999888888764 3
Q ss_pred CChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHH
Q 004733 387 PDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFL 463 (733)
Q Consensus 387 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 463 (733)
|+...+ ..++..+...++..+|++.++++. +.+...+..+..++.
T Consensus 167 p~~~~~--------------------------------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 167 PTVQNY--------------------------------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ 214 (822)
T ss_pred cchHHH--------------------------------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 443333 223333444566656888888875 335567777888888
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHH------hHHHHHHHh-----cccCCh---HHHHHHHHHHHH-cCCCCc-hhH---
Q 004733 464 LNGFPVQGLQHFSELLMSELRPDEY------TLSVALSSC-----ARISSL---RHGKQIHGYVLK-NNLISK-MSL--- 524 (733)
Q Consensus 464 ~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~-~~~~~~-~~~--- 524 (733)
+.|-...|+++.++-... +.+... .....++.- .....+ +.|..-++.+.. .+-.|. ...
T Consensus 215 ~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~ 293 (822)
T PRK14574 215 RNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQR 293 (822)
T ss_pred HcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH
Confidence 888888888776653211 111110 111111111 112223 344444555443 222232 111
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhcCCCC--hh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCCHHHHHHH
Q 004733 525 -GNAMITLYAKCGDLDCSLRVFNMMIEKD--TI--SWNALISAYAQHGEGKEAVSCFKAMQDVGR----IKPDQATFTAV 595 (733)
Q Consensus 525 -~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~p~~~~~~~l 595 (733)
.--.+-++...|++.++++.|+.+..+. +. +-..+..+|...+++++|+.+++++..... ..++......|
T Consensus 294 ~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L 373 (822)
T PRK14574 294 ARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDL 373 (822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHH
Confidence 1233456677888899999998887433 22 345677888888899999999988866420 11223335677
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcC----------CCCCch---HHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhH
Q 004733 596 LSACSHAGLVDDGTRIFDSMVNDYG----------FIPAED---HLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNW 660 (733)
Q Consensus 596 l~~~~~~~~~~~A~~~~~~~~~~~~----------~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 660 (733)
.-+|...+++++|..+++++.+... -.|+.. ....++..+.-.|++.+|++.++++. .+.+....
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~ 453 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLR 453 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 7888888999999999988886311 123322 34556777888899999999888876 44455577
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
..+...+...|.+.+|+..++.+..++|++..+...++.++...|++++|..+.+.+.+..++
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 788888888899999999998888888998888888888888899999998888777765543
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1.9e-13 Score=139.14 Aligned_cols=633 Identities=12% Similarity=0.048 Sum_probs=388.5
Q ss_pred cchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhH
Q 004733 19 ELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTI 98 (733)
Q Consensus 19 ~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (733)
|.+...-.....+.-+|+.++|+.++.++.+. .+-+...|.+|...+-..|+...+...+-.+.... +-|...|-.+
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l 213 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 44555555556666679999999999999776 45667789999999999999998877665544333 3345888888
Q ss_pred HHHHhhccChHHHHHHHHhcCCCCcchh---hHHHHHhhccCChhHHHHHhccCCCCCh----h----hHHHHHHHHhhc
Q 004733 99 LSLYKNARDLVSVKRVFSEIQNPDVYSW---TTFLSACTKMGHVDYACEVFDKMPDRDL----P----VYNAMITGCTEN 167 (733)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~ 167 (733)
.....+.|.+..|.-.|.+.++.+|..| -.-...|-+.|+...|..-|.++.+-+. . .--.++..+...
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999887444433 3345678889999999888877754222 2 222345666777
Q ss_pred CChhHHHHHHHHHHHcC-CCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHh---------------------------C
Q 004733 168 GYEDIGIGLFREMHKLD-VRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKS---------------------------G 218 (733)
Q Consensus 168 ~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~---------------------------~ 218 (733)
++-+.|.+.++.....+ -.-+-..++.+...+ ....++.+......+... +
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 77788988888886632 123445677777777 777788887777666651 1
Q ss_pred CCCchHH-HHHHHHHhHhcCChHHHHHHHHhhhcCCC--CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 004733 219 FSCLVSV-VNALITMYFNCGNVVDACKVFEEAKGYVC--DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFV 295 (733)
Q Consensus 219 ~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 295 (733)
+.++..+ ...+.-...+.+...+++..|.......| ++..|.-+..++.+.|++.+|+.+|..+......-+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~----- 448 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN----- 448 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc-----
Confidence 2233333 22222222344555555555554444323 455677888888888888888888888876532222
Q ss_pred HHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccC---CcccHHHHHHHHHhcCChHH
Q 004733 296 SVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEK---DIVSWNTMISTYAQRNLGRS 372 (733)
Q Consensus 296 ~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 372 (733)
..+|-.+.++|...|..+.|...++.+... +...--.|...+-+.|+.++
T Consensus 449 ---------------------------~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 449 ---------------------------AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEK 501 (895)
T ss_pred ---------------------------hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHH
Confidence 334566788899999999999999998873 33444556677889999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 004733 373 AILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---- 448 (733)
Q Consensus 373 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 448 (733)
|++++..+. .||..+. ...+..|.........+.+.+.|+.++-..+...|.
T Consensus 502 alEtL~~~~----~~D~~~~--------------------e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~ 557 (895)
T KOG2076|consen 502 ALETLEQII----NPDGRNA--------------------EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL 557 (895)
T ss_pred HHHHHhccc----CCCccch--------------------hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999875 3442211 011111222222223333334444333222211110
Q ss_pred ----------------------CCChhhHHHHHHHHHhCCCchHHHH------HHHHHHHCCCCCCH--HhHHHHHHHhc
Q 004733 449 ----------------------PRNIITWNTLINGFLLNGFPVQGLQ------HFSELLMSELRPDE--YTLSVALSSCA 498 (733)
Q Consensus 449 ----------------------~~~~~~~~~li~~~~~~~~~~~a~~------~~~~m~~~~~~p~~--~~~~~ll~~~~ 498 (733)
..........+.+-.+.++.....+ .+..-...|+..+. ..+.-++.+++
T Consensus 558 ~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~ 637 (895)
T KOG2076|consen 558 KKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLA 637 (895)
T ss_pred HHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHH
Confidence 1111222233333333333222111 11112222333322 23455677788
Q ss_pred ccCChHHHHHHHHHHHHcCC--CCch---hHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C---hhhHHHHHHHHHh
Q 004733 499 RISSLRHGKQIHGYVLKNNL--ISKM---SLGNAMITLYAKCGDLDCSLRVFNMMIEK-----D---TISWNALISAYAQ 565 (733)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~l~~~~~~ 565 (733)
+.+.+++|..+...+..... .++. ..-...+.+.+..+++..|...++.|... + ...||...+.+.+
T Consensus 638 k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~ 717 (895)
T KOG2076|consen 638 KLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSK 717 (895)
T ss_pred HHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 88888888888776665322 2222 23345566777888999999988888643 3 2356655555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHH--HHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH-HHhh--hcC-
Q 004733 566 HGEGKEAVSCFKAMQDVGRIKPDQATFTAVL--SACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCML-DLLG--RAG- 639 (733)
Q Consensus 566 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll--~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~~~--~~g- 639 (733)
.++-.--.+.+..+.. ..|+......++ .-....+.+..|+..+-+.... .|+....+..+ -++. ..+
T Consensus 718 ~~q~v~~~R~~~~~~~---~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lglafih~a~qr 791 (895)
T KOG2076|consen 718 YGQRVCYLRLIMRLLV---KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGLAFIHLALQR 791 (895)
T ss_pred HHHHHHHHHHHHHHhc---cCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHH
Confidence 5443333344443333 234432222222 2345677888899877777654 67755554332 2221 111
Q ss_pred -------ChHHHHHHHHhcC--CCC--ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc------------hHHHH
Q 004733 640 -------YLDEAERVINSQH--IQA--RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP------------SVYVL 696 (733)
Q Consensus 640 -------~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------------~~~~~ 696 (733)
..-.+..++.+.. -.+ ....+..+.++|...|=+..|+..|+++++..|.+. .+-+.
T Consensus 792 ~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N 871 (895)
T KOG2076|consen 792 RVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN 871 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh
Confidence 1234445554332 122 455778899999999999999999999999876532 23456
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 004733 697 LSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~ 716 (733)
|..+|-..|+...|.+++++
T Consensus 872 L~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 872 LHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred hhhhhccCCcHHHHHHHHHh
Confidence 77789999999999999874
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=7.3e-15 Score=136.06 Aligned_cols=316 Identities=16% Similarity=0.159 Sum_probs=206.3
Q ss_pred cHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHHh--hccChHHHH-HHHHhcC---CCCcchhhHHHHH
Q 004733 59 SLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYK--NARDLVSVK-RVFSEIQ---NPDVYSWTTFLSA 132 (733)
Q Consensus 59 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~-~~~~~~~---~~~~~~~~~l~~~ 132 (733)
+=+.|+.. ..+|....+--+++.|...|+++++.+--.|.+.-. ++.+..-++ +.|-.|. +.+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 45555544 346777777788899999999888888777665433 333322221 2222222 2344444
Q ss_pred hhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh--ccCchHHHHHH
Q 004733 133 CTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC--DAGLLEFGRQL 210 (733)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~ 210 (733)
+.|.+.+ ++-+...+...+|..||.++|+--..+.|.++|++......+.+..+||.++.+. ..| .++
T Consensus 191 --K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~L 260 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKL 260 (625)
T ss_pred --ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHH
Confidence 4555554 4445555566799999999999999999999999999888899999999999876 444 889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHH----hhh--cCCCCccchHHHHHHHHhcCChHH-HHHHHHHHH
Q 004733 211 HSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFE----EAK--GYVCDHISYNVMMDGLASVGRVEE-ALIRFRDML 283 (733)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~----~~~--~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~ 283 (733)
+.+|.+....||..++|.++.+..+.|+++.|.+.+- +|+ ++.|...+|..+|..+++.++..+ +..++.+..
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999999999999999999999999887766554 454 578999999999999999888754 344444433
Q ss_pred ----HcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--------
Q 004733 284 ----VASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE-------- 351 (733)
Q Consensus 284 ----~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------- 351 (733)
.+.++|-..+- ...+...+..|.+..+.+-|..+-.-+..
T Consensus 341 N~ltGK~fkp~~p~d----------------------------~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTD----------------------------NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred HhhccCcccCCCCch----------------------------hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 23333322221 12233334444455555555544433332
Q ss_pred CC---cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcc---hHHHHHHHHHHHHhCCcc
Q 004733 352 KD---IVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGF---IEMVEMIHAFVFINGIIT 419 (733)
Q Consensus 352 ~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~ 419 (733)
++ ..-|..+....++....+....+|+.|.-.-+-|+..+...++++... ++...+++..++..|-..
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 11 112444555555666666666666666666666666666666655443 666666666666555433
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=1.1e-11 Score=121.69 Aligned_cols=505 Identities=10% Similarity=0.023 Sum_probs=370.0
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCC
Q 004733 174 IGLFREMHKLDVRRDNYSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYV 253 (733)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 253 (733)
.+++.+.++. ++.++.-|-..+ ...+.+.|..++...++.- +.+... .-+|.+..-++.|..+++..++.-
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV---elE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV---ELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH---hccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455555553 222333332222 3344455888888877753 333333 345566677888999999887644
Q ss_pred C-CccchHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCChhhHHHHHHHcc---CchhHHHHHHHHHHhCCCcc--h
Q 004733 254 C-DHISYNVMMDGLASVGRVEEALIRFRD----MLVASLRPSELTFVSVMSACL---CPRVGYQVHAQAMKSGFEAY--T 323 (733)
Q Consensus 254 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~--~ 323 (733)
| +...|.+-...--.+|+.+....++.+ +..+|+..+...|..=-..|. ..-..+.+......-|++.. .
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 4 777887777777788998888887765 455688888777766555555 34445555555555555432 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhc
Q 004733 324 SVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSG 400 (733)
Q Consensus 324 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 400 (733)
.+|..-.+.|.+.+.++-|..+|....+ .+...|......--..|..+....+|++....- |....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~--------- 585 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEI--------- 585 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--Ccchh---------
Confidence 4666777777777777777777777666 244455555555555677777777777776642 22221
Q ss_pred chHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHH
Q 004733 401 FIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSE 477 (733)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 477 (733)
.+-....-+-..|++..|..++...- +.+...|-.-+..-....+++.|..+|.+
T Consensus 586 ----------------------lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 586 ----------------------LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred ----------------------HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 22334455667799999999988764 34556788888888899999999999998
Q ss_pred HHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh
Q 004733 478 LLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-DTI 554 (733)
Q Consensus 478 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~ 554 (733)
.... .|+...|.--+...-..++.++|.+++++..+. ++.-...|..+...+.+.++++.|...|..-.+ | .+.
T Consensus 644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 8775 477766666666666678899999999877764 333456778888899999999999999988765 3 345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
.|-.|...--+.|.+-+|..++++.+-.+ +.+...|...+..-.+.|..+.|..+..+.++. .+.+...|..-|.+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHh
Confidence 68888888888999999999999998876 556678999999999999999999999999987 56667788888998
Q ss_pred hhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 004733 635 LGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (733)
..+.++-....+.+.+.. .|+....+....+.....+++|...++++++.+|+...+|..+-..+...|.-++-.+++
T Consensus 797 e~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred ccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 888888888888887765 445566677788899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcCCCccccc
Q 004733 715 ELLKRTGVIKQPGCSWI 731 (733)
Q Consensus 715 ~~~~~~~~~~~~~~~~~ 731 (733)
.+.....+ +-|..|.
T Consensus 875 ~~c~~~EP--~hG~~W~ 889 (913)
T KOG0495|consen 875 KKCETAEP--THGELWQ 889 (913)
T ss_pred HHHhccCC--CCCcHHH
Confidence 98888754 3355553
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.7e-13 Score=127.21 Aligned_cols=440 Identities=13% Similarity=0.115 Sum_probs=274.3
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh---ccCchHHH-HHHHHHHHHhCCCCchHHHHHH
Q 004733 154 LPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC---DAGLLEFG-RQLHSLVTKSGFSCLVSVVNAL 229 (733)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 229 (733)
+.+-|.|+. +..+|...++.-+|+.|.+.|+..+...-..+++.. ...++.-+ ++-|-.|.+.|-. +..+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s---- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSS---- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccc----
Confidence 345666665 455788999999999999999887777666666542 33333322 2334444444422 1122
Q ss_pred HHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHH
Q 004733 230 ITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQ 309 (733)
Q Consensus 230 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 309 (733)
.+.|++.+ -+|+..+ ....+|.+||.++|+-...+.|.+++++-.....+.+..+||.+|.+.+ ...++.
T Consensus 190 ----WK~G~vAd--L~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-~~~~K~ 259 (625)
T KOG4422|consen 190 ----WKSGAVAD--LLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-YSVGKK 259 (625)
T ss_pred ----cccccHHH--HHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-hhccHH
Confidence 24455444 4444444 3678999999999999999999999999999888999999999998765 233377
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 004733 310 VHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDE 389 (733)
Q Consensus 310 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 389 (733)
+..+|....+.||..++|+++.+..+.|+++.|.+. |++++.+|++.|+.|..
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcch
Confidence 888888888888888888888888888888776543 33444455555555555
Q ss_pred hhHHHHHHhhcc----hHHHHHHH-HHHHH---hCCcc----chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------
Q 004733 390 FTFGSLLASSGF----IEMVEMIH-AFVFI---NGIIT----NIQVSNALISAYAKNERIKQAYQIFHNMSP-------- 449 (733)
Q Consensus 390 ~~~~~ll~~~~~----~~~~~~~~-~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 449 (733)
.+|..+|..+.+ ...+..+. +.+.. ..++| +...+...+..|.+..+.+.|.++-.-+..
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 555544444433 11111111 11111 11221 333456667777777787777777655431
Q ss_pred CC---hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHH
Q 004733 450 RN---IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGN 526 (733)
Q Consensus 450 ~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 526 (733)
++ ..-|..+....|+....+.-+..++.|+-.-+-|+..+...++++....+.++-.-++|..+...|.........
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 22 134566777788888888999999999888888999999999999999999999999999888877554444333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 004733 527 AMITLYAKCGDLDCSLRVFNMMIEKDTI---SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG 603 (733)
Q Consensus 527 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 603 (733)
-++..+++.. +.|+.. -+.....-|+ ..-.+.....-.++++.. -.....+..+-.+.+.|
T Consensus 473 eil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~---~~~t~l~~ia~Ll~R~G 536 (625)
T KOG4422|consen 473 EILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQD---WPATSLNCIAILLLRAG 536 (625)
T ss_pred HHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhcc---CChhHHHHHHHHHHHcc
Confidence 3333333321 012211 1111111111 111112222234444433 33344555555667778
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHH---HHHHHhhhcCChHHHHHHHHhcC
Q 004733 604 LVDDGTRIFDSMVNDYGFIPAEDHLS---CMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 604 ~~~~A~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
..++|.+++..+.+.+.-.|.....+ -+++.-....+...|...++-+.
T Consensus 537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888888877755534444444444 44555566667777777776654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=7.8e-11 Score=115.73 Aligned_cols=539 Identities=11% Similarity=0.026 Sum_probs=362.4
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHH
Q 004733 169 YEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFE 247 (733)
Q Consensus 169 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 247 (733)
+..+|..+++...+.+.. ++..|..--+.= ..|.+..|..+...-.+.. +-+..+|.--+ +....+.|..+.-
T Consensus 266 DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHHHHH
Confidence 455666666666665422 222333322322 5555666655554444432 22223332222 2333444544444
Q ss_pred hhhcCCCCcc-chHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHH
Q 004733 248 EAKGYVCDHI-SYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVS 326 (733)
Q Consensus 248 ~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 326 (733)
.....-|+.+ .|- .+.--..+...=.++++...+. -|+.+..-...-.+...+.+.-++...++. ++.+...|
T Consensus 340 ~Avr~~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~--iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~dLw 413 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWL---KAADLESDTKNKKRVLRKALEH--IPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMDLW 413 (913)
T ss_pred HHHHhCCCChhhhh---hHHhhhhHHHHHHHHHHHHHHh--CCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHHHH
Confidence 4333223222 221 1111122223333445554443 344433322222222333344444444433 23333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHH----HHHCCCCCChhhHHHHHHhh
Q 004733 327 NAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLE----MQSVGIRPDEFTFGSLLASS 399 (733)
Q Consensus 327 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~ 399 (733)
-+|.+...++.|.+++++..+ .+...|.+-...--.+|+.+.+.+++.+ +...|+..+...|-.=-..|
T Consensus 414 ----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 414 ----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 345566778888888888776 4666777766666778999998888776 44567777766664433333
Q ss_pred cc---hHHHHHHHHHHHHhCCcc--chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHH
Q 004733 400 GF---IEMVEMIHAFVFINGIIT--NIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQG 471 (733)
Q Consensus 400 ~~---~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 471 (733)
.. .-..+.+....+.-|+.. -..++..-...|.+.+.++-|..+|.... +.+...|......--.+|..+..
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 33 444555566666656543 34567777788888999999999888765 45566787777777778999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 004733 472 LQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI-- 549 (733)
Q Consensus 472 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 549 (733)
..+|++....- +-....|.......-..|++..|..++....+.+.. +..+|-+-+..-....++++|..+|.+..
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 99999988863 344556666677777889999999999988877644 77888888999999999999999999886
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH
Q 004733 550 EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHL 628 (733)
Q Consensus 550 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~ 628 (733)
.+....|..-+....-.+..++|.+++++.++ ..|+- ..|..+.+.+.+.++.+.|.+.|..=.+. .+-.+..|
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk---~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLW 722 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALK---SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLW 722 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH---hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHH
Confidence 46667787777777778999999999999998 55775 56778888999999999999998877754 44456688
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC-----------------
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD----------------- 689 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------------- 689 (733)
-.|.+.=.+.|.+-.|..++++.. .+.+...|...++.-.+.|+.+.|..+.-++++..|.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 888888899999999999999866 4445668899999999999999999999998885553
Q ss_pred -------------CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCcccc
Q 004733 690 -------------KPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQPGCSW 730 (733)
Q Consensus 690 -------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 730 (733)
|+.++...+..+....++++|++.|++....+...-..|.|
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 46666677888888999999999999998877665555555
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=4.2e-16 Score=150.63 Aligned_cols=217 Identities=18% Similarity=0.165 Sum_probs=114.8
Q ss_pred cccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChHHHHHH
Q 004733 498 ARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI--EKDTISWNALISAYAQHGEGKEAVSC 575 (733)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 575 (733)
...++.+.|...++.+...+.. ++..+..++.. ...+++++|.+++.... .+++..+..++..+.+.++++++.++
T Consensus 55 ~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 55 WSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHH
Confidence 3344555555555555443322 33344556655 67788888888887764 34566777888889999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC--
Q 004733 576 FKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-- 652 (733)
Q Consensus 576 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 652 (733)
++.+......+++...|..+...+.+.|++++|.+.+++..+. .|+ ......++..+...|+.+++.+++....
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 9998765424556677888888999999999999999999976 564 7788899999999999999888887765
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.+.++..+..+..++...|+.++|...++++.+..|+|+.....++.++...|+.++|.++++++.+
T Consensus 210 ~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 210 APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456667889999999999999999999999999999999999999999999999999999887653
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=3.2e-12 Score=129.57 Aligned_cols=523 Identities=11% Similarity=0.018 Sum_probs=288.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCC
Q 004733 175 GLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYV 253 (733)
Q Consensus 175 ~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 253 (733)
.++-.+...|+.|+..||..++.-+ ..|+.+.|- +|.-|.-...+....+++.++.....+++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 4567778888999999999888666 888888888 8888887777788888888888888888877665 3
Q ss_pred CCccchHHHHHHHHhcCChHH---HHHHHHH----HHHcCCCCChhhHHHHHHHcc--Cchh--------HHHHHHHHHH
Q 004733 254 CDHISYNVMMDGLASVGRVEE---ALIRFRD----MLVASLRPSELTFVSVMSACL--CPRV--------GYQVHAQAMK 316 (733)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~---a~~~~~~----m~~~~~~p~~~t~~~ll~~~~--~~~~--------~~~~~~~~~~ 316 (733)
|.+.+|..|..+|.+.||... +.+.+.. ....|+.....-+-..++.|. .++. -+.++....+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999988755 2221111 122344444444444444443 1111 1223333333
Q ss_pred hC--CCcchHHHHH--HHHHHHh-cCCHHHHHHHHHhccc-CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 004733 317 SG--FEAYTSVSNA--AITMYSS-CGKIDEACMIFARLQE-KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEF 390 (733)
Q Consensus 317 ~g--~~~~~~~~~~--li~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 390 (733)
.+ .+.....-.. +++-... ...+++-..+.+.... +++.+|..++.+-..+|+.+.|..++.+|.+.|+..+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 33 1211110000 1222221 2334455555555555 899999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCC---
Q 004733 391 TFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGF--- 467 (733)
Q Consensus 391 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~--- 467 (733)
-|..++.+......++.+.+.|...|+.|+..++...+-.+.++|....+......-.--....+..+..+.....+
T Consensus 241 yFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 241 YFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred cchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 99999999777999999999999999999999999888888776663322222111110011122222222111111
Q ss_pred --chHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHH
Q 004733 468 --PVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISK---MSLGNAMITLYAKCGDLDCSL 542 (733)
Q Consensus 468 --~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 542 (733)
..-....+.+..-.|+......|....... ..|.-+++.++...+.......+ +..|..++ .
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l------------r 387 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL------------R 387 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHH------------H
Confidence 111222223333334443444443333322 25666666666666553322211 22222222 2
Q ss_pred HHHHhcCCCChh-hHH--H------------HHHHHHhcCChHHHHHHHHHHHHcC---CCCC-------CHHHHHHHHH
Q 004733 543 RVFNMMIEKDTI-SWN--A------------LISAYAQHGEGKEAVSCFKAMQDVG---RIKP-------DQATFTAVLS 597 (733)
Q Consensus 543 ~~~~~~~~~~~~-~~~--~------------l~~~~~~~~~~~~A~~~~~~~~~~~---~~~p-------~~~~~~~ll~ 597 (733)
++|.+...+... .++ . .+.-+...-+...+++-+....... .+.| =...-+.++.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 223322221110 011 0 0000110111122222111111100 0111 0112233444
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-----CCCChhhHHHHHHHHHhhCC
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-----IQARSDNWWALFSACAAHGN 672 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~ 672 (733)
.|...-+..++...-+..... -+ | ..|..|++.+...++.+.|..+.++.. ..-+..-+..+...+.+.+.
T Consensus 468 ~l~se~n~lK~l~~~ekye~~-lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDL-LF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 444444445555444433332 11 1 566777777777777777777776654 12223334555666666776
Q ss_pred HHHHHHHHHHHhccC---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 004733 673 LRLGRIIAGLLLERE---QDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIK 724 (733)
Q Consensus 673 ~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (733)
...+..+++...+.- |.-......+.+.....|+-+.-.+..+-+...|+..
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 666666666665522 3334455555566666777766666666666666554
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.8e-12 Score=119.90 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=148.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHh
Q 004733 525 GNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACS 600 (733)
Q Consensus 525 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~ 600 (733)
|--+..+|....+.++-...|++..+ .++.+|..-.+.+.-.+++++|..=|++.+. +.|+. ..|..+.-+.-
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS---LDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh---cChhhhHHHHHHHHHHH
Confidence 33445567777778888888887753 3667787777777778899999999999988 55654 45666666667
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC---------hhhHHHHHHHHHhh
Q 004733 601 HAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR---------SDNWWALFSACAAH 670 (733)
Q Consensus 601 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---------~~~~~~l~~~~~~~ 670 (733)
+.+.++++...|++..++ ++-.++.|+....++..+++++.|.+.++... ..|+ +.+...++..-.+
T Consensus 440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk- 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK- 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-
Confidence 888999999999999887 55567789999999999999999999998754 4444 2223333333333
Q ss_pred CCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 671 GNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 671 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
+|+..|+.++.++.+++|....++..|+..-...|+.++|+++|++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998653
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=6.6e-12 Score=117.54 Aligned_cols=442 Identities=12% Similarity=0.081 Sum_probs=284.1
Q ss_pred chHHHHHHHHHhHhcCChHHHHHHHHhhhc--CCCCccch-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004733 222 LVSVVNALITMYFNCGNVVDACKVFEEAKG--YVCDHISY-NVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVM 298 (733)
Q Consensus 222 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 298 (733)
+-.+...|..-|.......+|+..++-+.. ..||.-.. ..+...+.+...+.+|+++|+-....-...+..+-..++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 334455566667777778888888877542 33444332 224466788888999999888776652222333322222
Q ss_pred HHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcccHHHHHHHHHhcCChHHHHHH
Q 004733 299 SACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--KDIVSWNTMISTYAQRNLGRSAILA 376 (733)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~ 376 (733)
+.+--.+.+.|+++.|..-|+...+ ||..+--.|+-++..-|+.++..+.
T Consensus 280 ----------------------------~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkea 331 (840)
T KOG2003|consen 280 ----------------------------NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEA 331 (840)
T ss_pred ----------------------------hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHH
Confidence 3333446788999999999998766 7766544455566678899999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHH-----HHHHHHhcCC--HHHHH----HHHh
Q 004733 377 YLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNA-----LISAYAKNER--IKQAY----QIFH 445 (733)
Q Consensus 377 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~--~~~A~----~~~~ 445 (733)
|.+|......||...|. +..-.|+....+. .+.-.-+.+. .++++ ++..
T Consensus 332 f~kli~ip~~~dddkyi--------------------~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia 391 (840)
T KOG2003|consen 332 FQKLIDIPGEIDDDKYI--------------------KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA 391 (840)
T ss_pred HHHHhcCCCCCCccccc--------------------CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 99998876666665541 0111122211111 1111111111 11111 1111
Q ss_pred hcCCCChh---hH----------H--------HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhH--HHHHHHhcccCC
Q 004733 446 NMSPRNII---TW----------N--------TLINGFLLNGFPVQGLQHFSELLMSELRPDEYTL--SVALSSCARISS 502 (733)
Q Consensus 446 ~~~~~~~~---~~----------~--------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~ 502 (733)
-+..|+-. -| . .-...+.+.|+++.|.++++-+.+..-+.-...- ...+.-+..-.+
T Consensus 392 pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~ 471 (840)
T KOG2003|consen 392 PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKD 471 (840)
T ss_pred cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccc
Confidence 11122210 01 0 0123478899999999999988776433222222 222333333346
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHH-----HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHH---HHHhcCChHHHHH
Q 004733 503 LRHGKQIHGYVLKNNLISKMSLGNAMI-----TLYAKCGDLDCSLRVFNMMIEKDTISWNALIS---AYAQHGEGKEAVS 574 (733)
Q Consensus 503 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~ 574 (733)
+..|.++-+..... .-||.-. ......|++++|.+.|.+....|...-.+|.. .+-..|+.++|+.
T Consensus 472 ~~~aqqyad~aln~------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald 545 (840)
T KOG2003|consen 472 FADAQQYADIALNI------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALD 545 (840)
T ss_pred hhHHHHHHHHHhcc------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHH
Confidence 66666665554432 1222211 12234689999999999999887765444432 4567899999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHH-HhcC-
Q 004733 575 CFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVI-NSQH- 652 (733)
Q Consensus 575 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~- 652 (733)
.|-++..- +..+......+...|....+...|++++-+.... ++.|+.+++.|.+.|-+.|+-..|.+.. +...
T Consensus 546 ~f~klh~i--l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 546 CFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 99988663 2345566778888999999999999999988754 5666889999999999999999998864 4445
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
.+.+..+..-+...|....-.++|+..++++.-..|+...-...++.++.+.|++.+|.++++..-++=
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 556666777777777777788999999999999999876655566677778999999999999887643
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.4e-11 Score=114.50 Aligned_cols=341 Identities=10% Similarity=0.085 Sum_probs=192.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH-----HhhcchHH
Q 004733 330 ITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLL-----ASSGFIEM 404 (733)
Q Consensus 330 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~~~ 404 (733)
.-.+.+.|..+.|++.|......-+..|.+.+....-.-+.+.+..+ . .|...|...+...+ +.....+.
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 34456778888899888887775566666655543333333222211 1 12222222222211 11112333
Q ss_pred HHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh------hhHHHHHHHHHhCCCchHHHHHHHHH
Q 004733 405 VEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNI------ITWNTLINGFLLNGFPVQGLQHFSEL 478 (733)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m 478 (733)
+..-.......|++.+...-+....+.-...+++.|+.+|+++.+.|+ .+|+.++- .+..+.. +..+.+-
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~sk--Ls~LA~~ 321 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSK--LSYLAQN 321 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHH--HHHHHHH
Confidence 333334444455555555545555555556666666666666653222 33433332 1111111 1111110
Q ss_pred HHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhh
Q 004733 479 LMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD---TIS 555 (733)
Q Consensus 479 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~ 555 (733)
.. .-..+ -+.|+..+.+-|+-.++.++|...|++..+-| ...
T Consensus 322 v~---------------------------------~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a 366 (559)
T KOG1155|consen 322 VS---------------------------------NIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA 366 (559)
T ss_pred HH---------------------------------HhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH
Confidence 00 00111 12334445555666677777777777766433 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHh
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLL 635 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (733)
|+.+..-|...++...|++-++++++-. +.|...|..|.++|.-.+.+.-|+-+|++..+- -+.|...|.+|.++|
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECY 442 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 7777777777777777777777777743 445667777777777777777777777777643 233466777777777
Q ss_pred hhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhc-------cCCCCchHHHHHHHHHHhcCC
Q 004733 636 GRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLE-------REQDKPSVYVLLSNIYAAAGL 706 (733)
Q Consensus 636 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~ 706 (733)
.+.++.++|++-|.+.. ...+...+..+...+.+.++..+|.+.+++.++ .+|....+...|+.-+.+.++
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Confidence 77777777777777655 333446677777777777777777777777766 333334445556666667777
Q ss_pred hHHHHHHHHHHH
Q 004733 707 WEEAANIRELLK 718 (733)
Q Consensus 707 ~~~A~~~~~~~~ 718 (733)
+++|..+..+..
T Consensus 523 ~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 523 FDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHh
Confidence 777766555443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=7.4e-12 Score=126.63 Aligned_cols=275 Identities=12% Similarity=0.073 Sum_probs=208.5
Q ss_pred cCCHHHHHHHHhhcCCC--Chhh-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHH--HHHHHhcccCChHHHHH
Q 004733 434 NERIKQAYQIFHNMSPR--NIIT-WNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLS--VALSSCARISSLRHGKQ 508 (733)
Q Consensus 434 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 508 (733)
.|+++.|++.+...... ++.. |........+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999888876532 2333 333344557899999999999999875 45554333 33567788899999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---h--------hHHHHHHHHHhcCChHHHHHHHH
Q 004733 509 IHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDT---I--------SWNALISAYAQHGEGKEAVSCFK 577 (733)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~A~~~~~ 577 (733)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.+... . .|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998776 44567778889999999999999999998874321 1 33334444445556677777777
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC
Q 004733 578 AMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR 656 (733)
Q Consensus 578 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 656 (733)
.+.+. .+.+......+..++...|+.++|.+.+++..+. .|+.... ++......++.+++++.+++.. ..|+
T Consensus 254 ~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 77543 3456778888999999999999999999999864 5555333 2333345699999999998766 5555
Q ss_pred hh-hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 657 SD-NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 657 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.. ....+...|...|++++|+..++++.+..|++.. +..|+.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 54 5678888999999999999999999999998654 66899999999999999999997754
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=7.2e-13 Score=130.76 Aligned_cols=278 Identities=14% Similarity=0.039 Sum_probs=215.9
Q ss_pred CHHHHHHHHhhcC--CCCh-hhHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHhHHHHHHHhcccCChHHHHHHH
Q 004733 436 RIKQAYQIFHNMS--PRNI-ITWNTLINGFLLNGFPVQGLQHFSELLMSE--LRPDEYTLSVALSSCARISSLRHGKQIH 510 (733)
Q Consensus 436 ~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 510 (733)
+..+|...|..++ .+|+ .....+..+|...+++++|..+|+.+.+.. ..-+...|.+.+..+.+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 4567788887755 2233 455667778888888889998888887753 112445666666544322 111222
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 004733 511 GYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD---TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKP 587 (733)
Q Consensus 511 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p 587 (733)
.+-.-.--+..+.+|.++..+|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDP 486 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCc
Confidence 221112234568899999999999999999999999998644 45788888888899999999999999977 445
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-C-CCChhhHHHH
Q 004733 588 D-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-I-QARSDNWWAL 663 (733)
Q Consensus 588 ~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l 663 (733)
+ ...|..+...|.++++++.|.-.|+++. .+.|. ......+...+.+.|+.++|+.+++++. . +.++-.-...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 4 3567788889999999999999999998 46776 4466778889999999999999999877 3 4445555666
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 664 FSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 664 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
+..+...+++++|...+|++.+.-|++..++.+++.+|.+.|+.+.|+..|--+.+..++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 777888999999999999999999999999999999999999999999999877766543
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=3.2e-09 Score=100.65 Aligned_cols=232 Identities=12% Similarity=0.075 Sum_probs=160.2
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH-------hHHHH---HHHhcccCChHHHHHHHHHHHHcCCC
Q 004733 450 RNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEY-------TLSVA---LSSCARISSLRHGKQIHGYVLKNNLI 519 (733)
Q Consensus 450 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~ 519 (733)
-|-.+|-..+..--..|+.+...++++..+.. ++|-.. .|.-+ +-.-....+++.+.++++...+ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 35567777788778889999999999988865 344211 11111 1112346788888888888887 455
Q ss_pred CchhHHHHHHHHH----HhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 004733 520 SKMSLGNAMITLY----AKCGDLDCSLRVFNMMIE--KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFT 593 (733)
Q Consensus 520 ~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 593 (733)
....++.-+--+| .++.++..|.+++..... |...+|...|..-.+.++++....++++.++-+ +-|..+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHH
Confidence 5566665554444 367788888888887763 666778888888888888999999999988844 33456777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHHHH----
Q 004733 594 AVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWALFSACA---- 668 (733)
Q Consensus 594 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~---- 668 (733)
.....-...|+.+.|..+|+-++....+......+...|+.=...|.++.|..+++++. ..+...+|..+...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 77777778889999999999888762222223356677777788889999998888866 4445556666554433
Q ss_pred -hhC-----------CHHHHHHHHHHHhc
Q 004733 669 -AHG-----------NLRLGRIIAGLLLE 685 (733)
Q Consensus 669 -~~g-----------~~~~A~~~~~~~~~ 685 (733)
+.| .+..|..+++++..
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 333 45677888887765
No 43
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=3.5e-08 Score=99.82 Aligned_cols=406 Identities=13% Similarity=0.055 Sum_probs=261.3
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004733 312 AQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPD 388 (733)
Q Consensus 312 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 388 (733)
..+....+.-|..+|..|.-++..+|+++.+.+.|++... .....|+.+...|...|.-..|+.++++-....-.|+
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 3444455677889999999999999999999999999876 4556788889999999999999999998765443343
Q ss_pred hhhH-HHHHHhhcc----hHHHHHHHHHHHH----hCCccchhHHHHHHHHHHhc----C-------CHHHHHHHHhhcC
Q 004733 389 EFTF-GSLLASSGF----IEMVEMIHAFVFI----NGIITNIQVSNALISAYAKN----E-------RIKQAYQIFHNMS 448 (733)
Q Consensus 389 ~~~~-~~ll~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~----g-------~~~~A~~~~~~~~ 448 (733)
..+- -..-..|.. .+.+......+.. ..-...+..|-.+.-+|... . ...++.+.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 3332 222222332 3333333333333 11122233333344344321 1 1234566666653
Q ss_pred ---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHH-cCCCCchhH
Q 004733 449 ---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLK-NNLISKMSL 524 (733)
Q Consensus 449 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 524 (733)
+.|+....-+..-|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|..+.+.... .|.......
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 3344333444455777889999999999999987678888899888889999999999998876553 332111110
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC------------------------------CC-C-hhhHHHHHHHHHhcC---Ch
Q 004733 525 GNAMITLYAKCGDLDCSLRVFNMMI------------------------------EK-D-TISWNALISAYAQHG---EG 569 (733)
Q Consensus 525 ~~~l~~~~~~~~~~~~A~~~~~~~~------------------------------~~-~-~~~~~~l~~~~~~~~---~~ 569 (733)
-. ++.-..-++.++|......+. ++ + +.++..+.......+ ..
T Consensus 552 ~~--~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 552 GK--IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hh--hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 00 111112344444443322221 00 1 112222222111111 11
Q ss_pred HHHHHHHHHHHHcCCCC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCC
Q 004733 570 KEAVSCFKAMQDVGRIK--PDQ------ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGY 640 (733)
Q Consensus 570 ~~A~~~~~~~~~~~~~~--p~~------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 640 (733)
+.. +.... +. |+. ..|......+.+.+..++|...+.+... +.|. ...|......+...|+
T Consensus 630 e~~------Lp~s~-~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 630 ELK------LPSST-VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred ccc------cCccc-ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHh
Confidence 111 11111 22 221 2344555678888999999988888874 4454 4467777788999999
Q ss_pred hHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHH--HHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 004733 641 LDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRI--IAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 641 ~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
+++|.+.|.... ..|+ +.+..++...+.+.|+-..|.. ++..+++.+|.++.+|+.||.++.+.|+.++|.+-|..
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999887655 6666 4578899999999999888877 99999999999999999999999999999999999998
Q ss_pred HHhCCCcCCCcccc
Q 004733 717 LKRTGVIKQPGCSW 730 (733)
Q Consensus 717 ~~~~~~~~~~~~~~ 730 (733)
..+... ..|-.+|
T Consensus 780 a~qLe~-S~PV~pF 792 (799)
T KOG4162|consen 780 ALQLEE-SNPVLPF 792 (799)
T ss_pred HHhhcc-CCCcccc
Confidence 877653 4465555
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.1e-10 Score=108.50 Aligned_cols=396 Identities=12% Similarity=0.105 Sum_probs=280.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH--HHHHhhcc
Q 004733 327 NAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFG--SLLASSGF 401 (733)
Q Consensus 327 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~ 401 (733)
-.....-...+++..|..+|++... .++..|-..+..-.++..+..|..+++.....=.+.|..-|. .+=..+++
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 3334444556777888888888776 566667777777788888888888888887754444544433 33345555
Q ss_pred hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhCCCchHHHHHHHHHH
Q 004733 402 IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS--PRNIITWNTLINGFLLNGFPVQGLQHFSELL 479 (733)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 479 (733)
+..+.++++.-. ...|+...+.+.++.=.+.+.++.|..+++... .|++.+|--....=.++|+...+..++....
T Consensus 157 i~gaRqiferW~--~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 157 IAGARQIFERWM--EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 666776666543 457888888888888888899999999998865 7888888888887888888888888888876
Q ss_pred HCCCCCCHHhHHHHHHHh----cccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHH--------HH
Q 004733 480 MSELRPDEYTLSVALSSC----ARISSLRHGKQIHGYVLKNNLIS-KMSLGNAMITLYAKCGDLDCSLRV--------FN 546 (733)
Q Consensus 480 ~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~--------~~ 546 (733)
+.- -|...-..+..++ .++..++.|.-++.....+-... ....|..+...--+-|+....... ++
T Consensus 235 e~~--~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 235 EFL--GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 631 2233333333333 44567778888888777653222 133444333333344554433332 22
Q ss_pred hcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH--HHH----HHHH-HH---hccCCHHHHHHHHH
Q 004733 547 MMIEK---DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA--TFT----AVLS-AC---SHAGLVDDGTRIFD 613 (733)
Q Consensus 547 ~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~--~~~----~ll~-~~---~~~~~~~~A~~~~~ 613 (733)
.+.+. |-.+|--.+..-...|+.+...++|++++.. ++|-.. .|. ..++ +| ....+.+.+.++++
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22333 4456766777777889999999999999985 566431 111 1222 22 35689999999999
Q ss_pred HhHhhcCCCCCchHHHHHH----HHhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 004733 614 SMVNDYGFIPAEDHLSCML----DLLGRAGYLDEAERVINSQH-IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQ 688 (733)
Q Consensus 614 ~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 688 (733)
..++. ++....|+..+- ....++.++..|.+++-... ..|....+..++..-.+.++++....++++.++.+|
T Consensus 391 ~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 391 ACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 99964 444445665543 34468899999999997655 889999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCcccc
Q 004733 689 DKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQPGCSW 730 (733)
Q Consensus 689 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 730 (733)
.+..+|...+..-...|+.+.|..+|+-..++.....|..-|
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999999999999999988876555554433
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=2.9e-11 Score=122.39 Aligned_cols=285 Identities=9% Similarity=-0.024 Sum_probs=192.5
Q ss_pred cCCHHHHHHHHHhcccC--CcccHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHH
Q 004733 336 CGKIDEACMIFARLQEK--DIVSWNTM-ISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFV 412 (733)
Q Consensus 336 ~g~~~~a~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 412 (733)
.|+++.|++.+....+. ++..+..+ ..+..+.|+++.+...+.++.+. .|+......
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~------------------ 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVE------------------ 156 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHH------------------
Confidence 58888888777766552 22222222 33446778888888888888653 344332210
Q ss_pred HHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHh
Q 004733 413 FINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYT 489 (733)
Q Consensus 413 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 489 (733)
......+...|+++.|...++.+. +.++.....+...|.+.|++++|.+++..+.+.+..++. .
T Consensus 157 ------------l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~ 223 (398)
T PRK10747 157 ------------ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-H 223 (398)
T ss_pred ------------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-H
Confidence 122456777788888888877765 345566777777888888888888888888776643221 1
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhc
Q 004733 490 LSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQH 566 (733)
Q Consensus 490 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 566 (733)
...+- ...|..++.......+.+...++++.+++ .++.....+...+...
T Consensus 224 ~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 224 RAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC
Confidence 11000 01122233333334456666777777653 4666778888888999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHH
Q 004733 567 GEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAER 646 (733)
Q Consensus 567 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 646 (733)
|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+. .+-|+..+..+...+.+.|++++|.+
T Consensus 277 g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 277 DDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred CCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999888873 4555322 233444568889999999988876 33445577788899999999999999
Q ss_pred HHHhcC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 647 VINSQH-IQARSDNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 647 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
.|++.. ..|+...+..+...+.+.|+.++|...+++.+.+-
T Consensus 350 ~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 350 AFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998866 77888888888889999999999999999887653
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.3e-10 Score=104.39 Aligned_cols=254 Identities=13% Similarity=0.044 Sum_probs=196.7
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCC
Q 004733 460 NGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNL--ISKMSLGNAMITLYAKCGD 537 (733)
Q Consensus 460 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 537 (733)
.++......+++.+-.......|+.-+...-+....+.....++++|..+|+++.+... -.|..+|+.++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555557778888888888888766666666666666778899999999999988742 1245666655533222222
Q ss_pred HHH-HHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHh
Q 004733 538 LDC-SLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSM 615 (733)
Q Consensus 538 ~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~ 615 (733)
+.- |..++ .+.+-.+.|.-++.+-|.-.++.++|..+|++..+. .|.. ..|..+..-|....+...|++-++.+
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL---Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL---NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc---CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 222 22222 222334556666677777888999999999999994 4664 56888888999999999999999999
Q ss_pred HhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 616 VNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
++- .+-|-..|-.|.++|.-.+...=|+-+|++.. .+.|+..|.++..+|.+.++.++|+..++.+......+..+
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 854 23356688999999999999999999999877 45567789999999999999999999999999999889999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 694 YVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+..|+++|-+.++.++|..++++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999987765
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=6.9e-11 Score=106.29 Aligned_cols=291 Identities=12% Similarity=0.125 Sum_probs=196.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHH
Q 004733 365 AQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIF 444 (733)
Q Consensus 365 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (733)
.-+++.++|.+.|-+|.+. |+.|+-. --+|.+.|.+.|.+|.|+++-
T Consensus 46 LLs~Q~dKAvdlF~e~l~~----d~~t~e~-----------------------------~ltLGnLfRsRGEvDRAIRiH 92 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE----DPETFEA-----------------------------HLTLGNLFRSRGEVDRAIRIH 92 (389)
T ss_pred HhhcCcchHHHHHHHHHhc----CchhhHH-----------------------------HHHHHHHHHhcchHHHHHHHH
Confidence 3467889999999999873 3333321 136778888899999999988
Q ss_pred hhcC-CCChh------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcC
Q 004733 445 HNMS-PRNII------TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNN 517 (733)
Q Consensus 445 ~~~~-~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 517 (733)
+.+. .||.. ....|..-|...|-++.|+++|..+.+.+. --....
T Consensus 93 Q~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~Al--------------------------- 144 (389)
T COG2956 93 QTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGAL--------------------------- 144 (389)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHH---------------------------
Confidence 8775 44432 344556667788888888888888876541 111222
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh--------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH
Q 004733 518 LISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTIS--------WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ 589 (733)
Q Consensus 518 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 589 (733)
..++..|-...+|++|.++-+++.+-+... |--+...+....+.+.|..++++..+.. |..
T Consensus 145 --------qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~---~~c 213 (389)
T COG2956 145 --------QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD---KKC 213 (389)
T ss_pred --------HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC---ccc
Confidence 334555555566666666655554322222 2234444455678888888888888854 443
Q ss_pred H-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHHH
Q 004733 590 A-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWALFSAC 667 (733)
Q Consensus 590 ~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 667 (733)
+ .-..+.+.+...|+++.|.+.|+.+.+. +..--+.+...|..+|...|+.++...++.++. ..+.......+....
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~li 292 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLI 292 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHH
Confidence 3 3344556778888899999999888877 444446677888888889999988888887755 555665655666555
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCcCCCcc
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA--AGLWEEAANIRELLKRTGVIKQPGC 728 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~ 728 (733)
....-.+.|...+.+-+...|+-...+..+..-... .|...+.+..++.|....++..|.+
T Consensus 293 e~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 293 ELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555556778888888888888776666655433333 4668888899999988877777743
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=5.8e-11 Score=120.95 Aligned_cols=281 Identities=11% Similarity=0.021 Sum_probs=198.0
Q ss_pred HhcCCHHHHHHHHhhcCC--CCh-hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH--hHHHHHHHhcccCChHHH
Q 004733 432 AKNERIKQAYQIFHNMSP--RNI-ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEY--TLSVALSSCARISSLRHG 506 (733)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 506 (733)
...|+++.|.+.+....+ |+. ..+-....+..+.|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 457999999999887653 332 334444567778899999999999987654 4442 333357777888999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHH----HHHHHHhcCChHHHHHHHHHH
Q 004733 507 KQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEK---DTISWNA----LISAYAQHGEGKEAVSCFKAM 579 (733)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~A~~~~~~~ 579 (733)
...++.+.+.. +-++.+...+...+...|++++|.+.+..+.+. +...+.. ........+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999988876 335567788899999999999999999988743 2222311 111112223333334455555
Q ss_pred HHcC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchH---HHHHHHHhhhcCChHHHHHHHHhcC-C
Q 004733 580 QDVG--RIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDH---LSCMLDLLGRAGYLDEAERVINSQH-I 653 (733)
Q Consensus 580 ~~~~--~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~ 653 (733)
.+.. ..+.+...+..+...+...|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++.. .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 5432 01136777888888999999999999999999976 444432 1111222234577888888887755 4
Q ss_pred CCCh---hhHHHHHHHHHhhCCHHHHHHHHH--HHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 654 QARS---DNWWALFSACAAHGNLRLGRIIAG--LLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 654 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.|+. ....++.+.+.+.|++++|...++ .+.+..|++.. +.+++.++.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5554 456788999999999999999999 56667776554 66999999999999999999997643
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=1.9e-10 Score=117.22 Aligned_cols=284 Identities=11% Similarity=-0.039 Sum_probs=203.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHH
Q 004733 365 AQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIF 444 (733)
Q Consensus 365 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (733)
...|+++.|.+.+.+..+. .|++..+. -....++...|+.+.|.+.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~-------------------------------llaA~aa~~~g~~~~A~~~l 141 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNL-------------------------------IKAAEAAQQRGDEARANQHL 141 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHH-------------------------------HHHHHHHHHCCCHHHHHHHH
Confidence 4578999999998876654 34433321 23445677889999999999
Q ss_pred hhcC--CCCh--hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC
Q 004733 445 HNMS--PRNI--ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLIS 520 (733)
Q Consensus 445 ~~~~--~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 520 (733)
.... .|+. ...-.....+...|+++.|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+
T Consensus 142 ~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 142 EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 8864 2333 233334677888999999999999998875 2345567788888999999999999999999887654
Q ss_pred chhHHHHHHHHH---H----hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH
Q 004733 521 KMSLGNAMITLY---A----KCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA 590 (733)
Q Consensus 521 ~~~~~~~l~~~~---~----~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~ 590 (733)
+......-..++ . .....+...+.++..++ .++..+..+...+...|++++|.+++++..+. .||..
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~ 297 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDR 297 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcc
Confidence 433211111111 2 22233455555555553 47788888999999999999999999999995 46654
Q ss_pred HH---HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHh--c-CCCCChhhHHHHH
Q 004733 591 TF---TAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINS--Q-HIQARSDNWWALF 664 (733)
Q Consensus 591 ~~---~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~ 664 (733)
.. ....-.....++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|++..+..+.
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 21 1222233456788899999999887622222225667899999999999999999993 3 3789998888999
Q ss_pred HHHHhhCCHHHHHHHHHHHhc
Q 004733 665 SACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 665 ~~~~~~g~~~~A~~~~~~~~~ 685 (733)
..+.+.|+.++|.+++++.+.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5.2e-12 Score=124.82 Aligned_cols=248 Identities=14% Similarity=0.101 Sum_probs=194.6
Q ss_pred CchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHH-HHH
Q 004733 467 FPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNN--LISKMSLGNAMITLYAKCGDLDC-SLR 543 (733)
Q Consensus 467 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-A~~ 543 (733)
+..+|+..|.++... +.-+......+-.+|...++++++..+|+.+.+.. ...+..+|.+.+--+-+.-...- |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999984443 33444666778899999999999999999998643 23456777776644332211111 222
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC
Q 004733 544 VFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKP-DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFI 622 (733)
Q Consensus 544 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 622 (733)
+.+ +....+.+|-++..+|.-+++++.|++.|++.++ +.| ...+|..+..-+.....+|.|...|+..+ ++.
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~ 485 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVD 485 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCC
Confidence 222 2234678999999999999999999999999999 667 56788888888888999999999999987 334
Q ss_pred CCch-HHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhh-HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 623 PAED-HLSCMLDLLGRAGYLDEAERVINSQH-IQARSDN-WWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 623 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
|.-. .|.-+.-.|.+.++++.|+-.|+++. +.|.... .-.+...+.+.|+.++|+.+++++..++|.++-.-+.-+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4322 44556788999999999999999877 6776554 4556666889999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC
Q 004733 700 IYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
++...|++++|+..|+++++.-+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCc
Confidence 99999999999999999998643
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.2e-10 Score=107.60 Aligned_cols=194 Identities=13% Similarity=0.032 Sum_probs=110.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD---TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS 597 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 597 (733)
.+.+|-++.--|.-.|+..+|.+.|.+...-| ...|-.+..+|+-.|..|.|+..+..+-+. ++-....+.-+.-
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGM 388 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHH
Confidence 34444445444555566666666666554322 235666666666666666666666655442 1112222333333
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC--------CCC-ChhhHHHHHHHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH--------IQA-RSDNWWALFSAC 667 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~ 667 (733)
-|.+.++.+-|.++|.+.. ++.|+ +..++.+.-.....+.+.+|..+|+... ..+ -.+++..+..+|
T Consensus 389 ey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 4556666666666666665 33443 4455555555555666666666665432 111 223455666666
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++.+.+++|+..+++++.+.|.++.++..+|-+|...|+++.|.+.|.+...
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 6666677777777777777777777777777666667777777766665554
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=4.6e-13 Score=129.48 Aligned_cols=252 Identities=13% Similarity=0.144 Sum_probs=110.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhh-cC----CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhccc
Q 004733 426 ALISAYAKNERIKQAYQIFHN-MS----PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARI 500 (733)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~-~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 500 (733)
.+...+.+.|++++|+++++. +. +.++..|..+.......++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 457788899999999999954 32 234455666666777889999999999999887633 45556666666 788
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 004733 501 SSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI-----EKDTISWNALISAYAQHGEGKEAVSC 575 (733)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 575 (733)
+++++|.++.....+.. +++..+...+..+.+.++++++.++++.+. .++...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999887665443 456667788889999999999999999864 34667888889999999999999999
Q ss_pred HHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--
Q 004733 576 FKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-- 652 (733)
Q Consensus 576 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 652 (733)
+++..+. .|+ ......++..+...|+.+++.++++...+. .+.++..+..+..++...|+.++|+..+++..
T Consensus 169 ~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 169 YRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 9999994 475 567888999999999999999999999877 35667788899999999999999999999876
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLER 686 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 686 (733)
.+.|+.....+..++...|+.++|..+.+++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 3446777789999999999999999999887653
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=4.5e-11 Score=113.20 Aligned_cols=198 Identities=17% Similarity=0.174 Sum_probs=165.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS 597 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 597 (733)
....+..+...+...|++++|.+.+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 345667788889999999999999998763 3 45677888889999999999999999999854 345567778888
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRL 675 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~ 675 (733)
.+...|++++|.+.+++.............+..+..++...|++++|...+++.. ..| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998751222234567778899999999999999998766 344 45577888888999999999
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 676 GRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 676 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
|...++++.+..|+++..+..++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998988899999999999999999999999887654
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2.5e-08 Score=91.14 Aligned_cols=225 Identities=11% Similarity=0.089 Sum_probs=146.7
Q ss_pred CcccchhhhccCCCCCCCcchhh--HHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHh-ccchhhhhh
Q 004733 1 MLQRRITATIAGNSNTSKELLLK--LNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACA-NLRNAAFGN 77 (733)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~ 77 (733)
||.|-..+++-+....++ +... -.--+.-+..+.++..|+.+++--... +. ......+..|.-|. +.|++++|.
T Consensus 1 mLsr~k~~~~R~~~g~~~-~~kkarK~P~Ledfls~rDytGAislLefk~~~-~~-EEE~~~~lWia~C~fhLgdY~~Al 77 (557)
T KOG3785|consen 1 MLSRFKNDSSRKRNGAGP-TIKKARKMPELEDFLSNRDYTGAISLLEFKLNL-DR-EEEDSLQLWIAHCYFHLGDYEEAL 77 (557)
T ss_pred CcccccCcccccccCCCC-cchhhhcCchHHHHHhcccchhHHHHHHHhhcc-ch-hhhHHHHHHHHHHHHhhccHHHHH
Confidence 666666554433333322 1111 011166677888999999999865322 11 11124455555554 789999999
Q ss_pred hHHHHHHHcccccCchhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHH-hhccCChhHHHHHhccCCCCChhh
Q 004733 78 QLHAYALRAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSA-CTKMGHVDYACEVFDKMPDRDLPV 156 (733)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~ 156 (733)
..+..+.. ...++....-.|.-.+.-.|.+.+|+.+-... |+......|+-- --+.|+-++...+-+.+.... .-
T Consensus 78 ~~Y~~~~~-~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka--~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-Ed 153 (557)
T KOG3785|consen 78 NVYTFLMN-KDDAPAELGVNLACCKFYLGQYIEAKSIAEKA--PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-ED 153 (557)
T ss_pred HHHHHHhc-cCCCCcccchhHHHHHHHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HH
Confidence 99998876 56667778888888888899999999988765 555555555544 446677777666655554322 22
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh--ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhH
Q 004733 157 YNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC--DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYF 234 (733)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 234 (733)
--+|.+...-.-++.+|+++|.+.... .|+-...|.-+..| +..-++.+.++++--++. ++.++...|.......
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLF 230 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHh
Confidence 334455555555799999999999875 47777888888887 888888888888877764 3344445554444444
Q ss_pred h
Q 004733 235 N 235 (733)
Q Consensus 235 ~ 235 (733)
+
T Consensus 231 R 231 (557)
T KOG3785|consen 231 R 231 (557)
T ss_pred h
Confidence 3
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=4.2e-07 Score=90.04 Aligned_cols=609 Identities=11% Similarity=0.066 Sum_probs=315.6
Q ss_pred CCCCCcchhhHHHHHHHHHcCCChH-HHHHHHHHHHhcCCCCCCcccHHHHHHHHh-c-------cchhhhhhhHHHHHH
Q 004733 14 SNTSKELLLKLNISLANLSRSGHYQ-DALHLFVQIHSSHKLKPDIYSLSTTLAACA-N-------LRNAAFGNQLHAYAL 84 (733)
Q Consensus 14 ~~~~~~~~~~~n~~l~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~-------~~~~~~a~~~~~~~~ 84 (733)
+...|-++.+|-.-|..-.. .+. .-..+|++.++. .+-+...|..-|++-- . ...+......++.-+
T Consensus 20 ilRnp~svk~W~RYIe~k~~--sp~k~~~~lYERal~~--lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~l 95 (835)
T KOG2047|consen 20 ILRNPFSVKCWLRYIEHKAG--SPDKQRNLLYERALKE--LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCL 95 (835)
T ss_pred HHcCchhHHHHHHHHHHHcc--CChHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Confidence 34456788888877765444 443 355566766554 3333333433332211 0 011222222222222
Q ss_pred HcccccCchhhHhHHHHHhhccChHHHHHHHHhcCC-----CCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHH
Q 004733 85 RAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQN-----PDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNA 159 (733)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 159 (733)
..= .--+.++-.-+..+..+|++......|++... .....|...+......|-++-+.++++...+-++..-+.
T Consensus 96 v~m-HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee 174 (835)
T KOG2047|consen 96 VFM-HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE 174 (835)
T ss_pred HHH-hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH
Confidence 110 02356677777778888888888888887653 233567777887778888888888888887777777788
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHcC------CCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCC--CCc--hHHHHH
Q 004733 160 MITGCTENGYEDIGIGLFREMHKLD------VRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGF--SCL--VSVVNA 228 (733)
Q Consensus 160 li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~ 228 (733)
-|..++..+++++|.+.+....... .+.+..-|.-+.... +..+.-.... ++.+.+.|+ -+| -..|.+
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHH
Confidence 8888899999999988888775432 122223333333333 2222211111 222333332 334 357889
Q ss_pred HHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCC----------------------hHHHHHHHHHHHHcC
Q 004733 229 LITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGR----------------------VEEALIRFRDMLVAS 286 (733)
Q Consensus 229 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~a~~~~~~m~~~~ 286 (733)
|.+-|.+.|.++.|..+|++.......+..|+.+.+.|++-.. ++-.+.-|+.+...+
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999999855432444455555555543211 122233333333221
Q ss_pred C-----------CCChhhHHHHHHHcc-CchhHHHHHHHHHHhC-----CCcchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004733 287 L-----------RPSELTFVSVMSACL-CPRVGYQVHAQAMKSG-----FEAYTSVSNAAITMYSSCGKIDEACMIFARL 349 (733)
Q Consensus 287 ~-----------~p~~~t~~~ll~~~~-~~~~~~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 349 (733)
. .-+..+|..-+.... +......++.+..+.- ...-...|..+.+.|-..|+++.|..+|++.
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 0 112222322222222 2344445555555441 1112346788888899999999999999888
Q ss_pred ccCCcc-------cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchh
Q 004733 350 QEKDIV-------SWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQ 422 (733)
Q Consensus 350 ~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (733)
.+-+-. +|......-.+..+++.|+.+++......-.|....| ...+.++ ..+..+..
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y-------d~~~pvQ--------~rlhrSlk 478 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY-------DNSEPVQ--------ARLHRSLK 478 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh-------cCCCcHH--------HHHHHhHH
Confidence 773322 3444445555667778888777765542211110111 0000000 00111333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH---HHHhCCCchHHHHHHHHHHHCCCCCCH-HhHHHHHHHhc
Q 004733 423 VSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLIN---GFLLNGFPVQGLQHFSELLMSELRPDE-YTLSVALSSCA 498 (733)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~ 498 (733)
+++..++.--..|-++....+++.+..--+.|-..+++ .+-.+.-++++.+++++-+..-.-|+. ..|+..+.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 44555555555666666666666654222211111111 122233455666666554333223332 22333333222
Q ss_pred ---ccCChHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCC
Q 004733 499 ---RISSLRHGKQIHGYVLKNNLISKMS--LGNAMITLYAKCGDLDCSLRVFNMMIEK-----DTISWNALISAYAQHGE 568 (733)
Q Consensus 499 ---~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~ 568 (733)
....++.|..+|++..+ +.+|.-. .|-.....=.+-|-...|..++++.... -...||+.|.--+..=-
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 22356666666666666 4443321 1111112222345566677777665421 12356666654444334
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHH---HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHH
Q 004733 569 GKEAVSCFKAMQDVGRIKPDQATFTAVLS---ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAE 645 (733)
Q Consensus 569 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 645 (733)
+.....+|++.++ .-||...-...+. .-++.|..+.|..++....+-.....+...|.+.-.-=.+.|+-+...
T Consensus 638 v~~TR~iYekaIe---~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 638 VPRTREIYEKAIE---SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYK 714 (835)
T ss_pred CcccHHHHHHHHH---hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHH
Confidence 4455666777766 4566554333333 335667777777777666554222223445555555555666644333
Q ss_pred HH
Q 004733 646 RV 647 (733)
Q Consensus 646 ~~ 647 (733)
+.
T Consensus 715 eM 716 (835)
T KOG2047|consen 715 EM 716 (835)
T ss_pred HH
Confidence 33
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=8.6e-10 Score=102.74 Aligned_cols=204 Identities=8% Similarity=-0.045 Sum_probs=148.0
Q ss_pred HHHHHHh--hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHh
Q 004733 159 AMITGCT--ENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFN 235 (733)
Q Consensus 159 ~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 235 (733)
.+..++. -.|++.+|.++..+-.+.+-.| ...|.....+. +.|+.+.+-.++.+..+..-.++..+.-........
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 3444443 3789999999998877765332 22344444566 899999999999999887556777888888889999
Q ss_pred cCChHHHHHHHHhhhcCCC-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHH
Q 004733 236 CGNVVDACKVFEEAKGYVC-DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQA 314 (733)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 314 (733)
.|+.+.|..-++++.+..| +....+...++|.+.|++.....++..|.+.|+--++..-.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~------------------- 226 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR------------------- 226 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-------------------
Confidence 9999999999999877666 66778899999999999999999999999998655543210
Q ss_pred HHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004733 315 MKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPD 388 (733)
Q Consensus 315 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 388 (733)
....++..+++-....+..+.-...++..++ .++..-..++.-+.+.|+.++|.++.++..+.+..|.
T Consensus 227 ------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 227 ------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 1112334444444444555555556666655 3566666777777788888888888888777766665
No 57
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2e-08 Score=98.33 Aligned_cols=437 Identities=14% Similarity=0.092 Sum_probs=267.6
Q ss_pred HHHHhHhcCChHHHHHHHHhhhcCCCC-ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhH
Q 004733 229 LITMYFNCGNVVDACKVFEEAKGYVCD-HISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVG 307 (733)
Q Consensus 229 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 307 (733)
=+..+...|++++|.+...++....|| ...+.+-+-++.+.+++++|+.+.+.-... .+++..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~---------- 81 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSF---------- 81 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchh----------
Confidence 356677888999999999998876674 456777788889999999999665432110 011000
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004733 308 YQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRP 387 (733)
Q Consensus 308 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 387 (733)
+-.-..+..+.+..++|...++...+.+..+...-...+.+.|++++|+++|+.+.+.+..-
T Consensus 82 ------------------~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 82 ------------------FFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred ------------------hHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 00112334578999999999996655565566666778889999999999999998765432
Q ss_pred ChhhH-HHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHH---HHHhcCCHHHHHHHHhhc--------CCCCh---
Q 004733 388 DEFTF-GSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALIS---AYAKNERIKQAYQIFHNM--------SPRNI--- 452 (733)
Q Consensus 388 ~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~--------~~~~~--- 452 (733)
-..-. ..++..... ... ..+......| ..+|..+.+ .+...|++.+|++++... ...|.
T Consensus 144 ~d~~~r~nl~a~~a~----l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 144 QDEERRANLLAVAAA----LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE 217 (652)
T ss_pred HHHHHHHHHHHHHHh----hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 22211 112211111 111 1222222333 334433333 456789999999999877 11111
Q ss_pred -------hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHH---HhcccCChHH--HHHHHHHH-------
Q 004733 453 -------ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALS---SCARISSLRH--GKQIHGYV------- 513 (733)
Q Consensus 453 -------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~~~~------- 513 (733)
..--.+...+...|+..+|..++...+... .+|........+ +...-.++.. ++..++..
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 122345556778999999999999999886 455433333222 2222222211 11111111
Q ss_pred ----HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHH-H-hcCChHHHHHHHHHHHHcCCCC
Q 004733 514 ----LKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD-TISWNALISAY-A-QHGEGKEAVSCFKAMQDVGRIK 586 (733)
Q Consensus 514 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~-~-~~~~~~~A~~~~~~~~~~~~~~ 586 (733)
....-.-....-+.++..| .+..+.+.++....+... ...+.+++..+ . +...+.++.+++...-+. .
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~---~ 371 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG---H 371 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc---C
Confidence 1000001111123334333 356677777777776433 22344444333 2 233578888888888764 3
Q ss_pred CCH--HHHHHHHHHHhccCCHHHHHHHHH--------HhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC----
Q 004733 587 PDQ--ATFTAVLSACSHAGLVDDGTRIFD--------SMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH---- 652 (733)
Q Consensus 587 p~~--~~~~~ll~~~~~~~~~~~A~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 652 (733)
|+. .....++.....+|+++.|.+++. .+.+. .-.+.+...++..+.+.++.+.|..++.+..
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~---~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA---KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh---ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 554 344555667789999999999999 55433 3345577778888999988888888777543
Q ss_pred ----CCCCh-hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 004733 653 ----IQARS-DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 653 ----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 715 (733)
..+.. ..+..+...-.++|+-++|...++++++.+|++......++-+|+.. +.+.|..+=+
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 22221 23444455556789999999999999999999999999998887765 4556666544
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=6.7e-07 Score=88.69 Aligned_cols=598 Identities=12% Similarity=0.102 Sum_probs=355.0
Q ss_pred CCCcccHHHHHHHHhcc-chhhhhhhHH--HHHHHcccccCchhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHH
Q 004733 54 KPDIYSLSTTLAACANL-RNAAFGNQLH--AYALRAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFL 130 (733)
Q Consensus 54 ~~~~~~~~~ll~~~~~~-~~~~~a~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 130 (733)
.|+....-.-=++|... |.+..=-..+ +...-.+..|+...|..+-+++ +.+...+..| +..|-..+
T Consensus 40 sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~------er~lv~mHkm----pRIwl~Yl 109 (835)
T KOG2047|consen 40 SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCF------ERCLVFMHKM----PRIWLDYL 109 (835)
T ss_pred CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHH------HHHHHHHhcC----CHHHHHHH
Confidence 56665544444455432 3332222222 1112235556666665554443 2233333333 45677788
Q ss_pred HHhhccCChhHHHHHhccCCC-----CChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCch
Q 004733 131 SACTKMGHVDYACEVFDKMPD-----RDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLL 204 (733)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~ 204 (733)
..+.++|++...+..|+.... .....|...+......+-++-++.+|++.++ +.|.. -+-.+..+ ..+++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIEYLAKSDRL 185 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccch
Confidence 888999999999999986542 3556799999999999999999999999987 33443 55556665 89999
Q ss_pred HHHHHHHHHHHHhC------CCCchHHHHHHHHHhHhcCChHH---HHHHHHhhhcCCCCc--cchHHHHHHHHhcCChH
Q 004733 205 EFGRQLHSLVTKSG------FSCLVSVVNALITMYFNCGNVVD---ACKVFEEAKGYVCDH--ISYNVMMDGLASVGRVE 273 (733)
Q Consensus 205 ~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~ 273 (733)
++|.+.+...+... .+.+-..|..+.+...+..+.-. ...++....+.-+|. ..|.+|.+.|.+.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 99999988876432 24556677777777666544332 334455544444554 46999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHH--HHHHHHHHh-CCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004733 274 EALIRFRDMLVASLRPSELTFVSVMSACLCPRVGY--QVHAQAMKS-GFEAYTSVSNAAITMYSSCGKIDEACMIFARLQ 350 (733)
Q Consensus 274 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~--~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 350 (733)
+|..+|++.... ..+..-|..+..++...++.. ...+...+. |-+-+. -+++-...-|+.+.
T Consensus 266 karDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~-------------~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 266 KARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD-------------VDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh-------------hhHHHHHHHHHHHH
Confidence 999999998775 344455555655544222110 001100001 111111 11222223333332
Q ss_pred cC---------------CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHh
Q 004733 351 EK---------------DIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFIN 415 (733)
Q Consensus 351 ~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 415 (733)
.. ++..|..-+ -+..|+..+...+|.+.... +.|-...
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~------------------------ 383 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAV------------------------ 383 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCC------------------------
Confidence 21 222222222 12345556666666665543 2222110
Q ss_pred CCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-------hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCC----
Q 004733 416 GIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNI-------ITWNTLINGFLLNGFPVQGLQHFSELLMSELR---- 484 (733)
Q Consensus 416 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---- 484 (733)
-.....+..+...|-..|+++.|..+|++...-+- .+|..-...=.++.+++.|+.+++......-.
T Consensus 384 --Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 384 --GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred --CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 00122346778888899999999999998764322 24555555556677888888887776432111
Q ss_pred ------C-------CHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 004733 485 ------P-------DEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE- 550 (733)
Q Consensus 485 ------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 550 (733)
| +...|...++.-...|-++....+++.+.+..+.....+.| ..-.+-...-++++.++|++-..
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCcc
Confidence 1 23345666666667788899999999998876644333323 22233455668999999998763
Q ss_pred ---CCh-hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHhHhhcCC
Q 004733 551 ---KDT-ISWNALISAYAQ---HGEGKEAVSCFKAMQDVGRIKPDQAT--FTAVLSACSHAGLVDDGTRIFDSMVNDYGF 621 (733)
Q Consensus 551 ---~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 621 (733)
|++ ..|+..+.-+.+ ...++.|..+|++..+ | ++|...- |......-.+.|....|++++++.... +
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~--v 616 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA--V 616 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc--C
Confidence 444 366666554442 2378999999999999 5 5665432 222222334568888999999998654 5
Q ss_pred CCC--chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHH---HHHHHHHhhCCHHHHHHHHHHHhccCCC--CchH
Q 004733 622 IPA--EDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWW---ALFSACAAHGNLRLGRIIAGLLLEREQD--KPSV 693 (733)
Q Consensus 622 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~ 693 (733)
++. ...|+..|.-....=-...-..++++.. .-|+...-. .+...-.+.|..++|..++....+.-|+ ++..
T Consensus 617 ~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 554 3366666554332222222333443332 234444333 3344456889999999999999997644 4567
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 004733 694 YVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~ 714 (733)
|...-.--.+.|+-+.-++.+
T Consensus 697 W~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 888877777889854444433
No 59
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.37 E-value=3.4e-07 Score=91.85 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=118.3
Q ss_pred HHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHHhhccCh
Q 004733 29 ANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYKNARDL 108 (733)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (733)
.+-.....|++|+.+++.+... +.-+..|..+..-|+..|+++.|.+++-. ...++..|.+|.+.|+|
T Consensus 740 eaai~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e---------~~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHh---------cchhHHHHHHHhccccH
Confidence 3444566777777777777332 33445566777777777887777776644 34567777888888888
Q ss_pred HHHHHHHHhcCCCCc--chhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC
Q 004733 109 VSVKRVFSEIQNPDV--YSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVR 186 (733)
Q Consensus 109 ~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 186 (733)
.+|-++-.+...|.. ..|..-..-+-++|++.+|.+++-.+..|+. .|..|-+.|..+..+++.++-.-.
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d--- 879 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD--- 879 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---
Confidence 888777777665543 3444444556677888888888777777764 356677777777777776654221
Q ss_pred CChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhh
Q 004733 187 RDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEA 249 (733)
Q Consensus 187 ~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 249 (733)
.-..|...+-.-+ ..|++..|..-|-+.- -|...+.+|-..+.|++|.++-+.-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 1112333333444 5666666665544332 2444555666666666666665543
No 60
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.6e-06 Score=90.38 Aligned_cols=654 Identities=12% Similarity=0.090 Sum_probs=345.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHH
Q 004733 22 LKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSL 101 (733)
Q Consensus 22 ~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (733)
..|-.-.+.+..+|+|++|-++-..-.+ |+--+..|-+.+=..-+..|.+..-...|..++..| +.+..---.+++.
T Consensus 361 ~Lfv~rFneLfaqG~Y~eAAkvAAsSPr--gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~Rp 437 (1666)
T KOG0985|consen 361 NLFVRRFNELFAQGEYEEAAKVAASSPR--GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRP 437 (1666)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHhCch--hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 4455555666677787777665543321 233344454444444444555555566666666666 4444444445555
Q ss_pred HhhccChHHHHHHHHhcC-----------CC-Cc----chh------hHHHHHhhccCChhHHHHHhccCC-CCChhhHH
Q 004733 102 YKNARDLVSVKRVFSEIQ-----------NP-DV----YSW------TTFLSACTKMGHVDYACEVFDKMP-DRDLPVYN 158 (733)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~-----------~~-~~----~~~------~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 158 (733)
-..+|+.+-.++++.+-. .| |+ .+| +.++..|+..|.++++.-...+.. .|| |-
T Consensus 438 VL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ym 514 (1666)
T KOG0985|consen 438 VLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YM 514 (1666)
T ss_pred HHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HH
Confidence 556666665555554321 11 10 011 223444455555555544444333 233 44
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHH-----------------HhhccCchHHHH---HHHHHHHHhC
Q 004733 159 AMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVL-----------------SVCDAGLLEFGR---QLHSLVTKSG 218 (733)
Q Consensus 159 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----------------~~~~~~~~~~a~---~~~~~~~~~~ 218 (733)
.+++.+.+ -+++++.++...|.+..- ....++.+. .+++...+++.. ++++.-...+
T Consensus 515 flLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~a 591 (1666)
T KOG0985|consen 515 FLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHA 591 (1666)
T ss_pred HHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccc
Confidence 55666655 467777777776665321 112222222 222222222211 1222211111
Q ss_pred C----------CCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchH----HHHHHHHhcCChHHHHHHHHHHHH
Q 004733 219 F----------SCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYN----VMMDGLASVGRVEEALIRFRDMLV 284 (733)
Q Consensus 219 ~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~ 284 (733)
+ .-+..-+..+...|.++|-..+|++.+.++..++...+.-+ --+-.+.-.-.++.+++.++.|..
T Consensus 592 PqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~ 671 (1666)
T KOG0985|consen 592 PQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLS 671 (1666)
T ss_pred hHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 0 01122256677788899999999988887654433221111 112234555678899999999999
Q ss_pred cCCCCChhhHHHHHHHcc---CchhHHHHHHHHHH-----------hCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004733 285 ASLRPSELTFVSVMSACL---CPRVGYQVHAQAMK-----------SGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQ 350 (733)
Q Consensus 285 ~~~~p~~~t~~~ll~~~~---~~~~~~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 350 (733)
.++..|..+...+-.-+. ..+...++|+.... -++..|+.+.-..|.+.++.|++.+.+++.++-.
T Consensus 672 ~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn 751 (1666)
T KOG0985|consen 672 ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN 751 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccc
Confidence 888877766555544433 22222333333222 1456788888889999999999999988776542
Q ss_pred c---------------CC----------------cccH------HHHHHHHHhcCC------------------------
Q 004733 351 E---------------KD----------------IVSW------NTMISTYAQRNL------------------------ 369 (733)
Q Consensus 351 ~---------------~~----------------~~~~------~~li~~~~~~g~------------------------ 369 (733)
- +| ...| -..|..|.+.=+
T Consensus 752 ~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~L 831 (1666)
T KOG0985|consen 752 CYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNL 831 (1666)
T ss_pred cCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHH
Confidence 1 11 1111 112223332211
Q ss_pred ----------------------hHHHHHHHHHHHHCCCCCChhhHHHHHHhhcc----hHH---------HHHHHHHHHH
Q 004733 370 ----------------------GRSAILAYLEMQSVGIRPDEFTFGSLLASSGF----IEM---------VEMIHAFVFI 414 (733)
Q Consensus 370 ----------------------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~---------~~~~~~~~~~ 414 (733)
..--+-+++.....|. .|..+++++-..+-. .+. ...+-+...+
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEK 910 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEK 910 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcc
Confidence 1111112222222222 233444443321111 000 0000000000
Q ss_pred hCC-------------------ccchhHHHHHHHHHHhcCCHHHHHHHHhhcC-----------------CCChhhHHHH
Q 004733 415 NGI-------------------ITNIQVSNALISAYAKNERIKQAYQIFHNMS-----------------PRNIITWNTL 458 (733)
Q Consensus 415 ~~~-------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------------~~~~~~~~~l 458 (733)
... -.....|....+-+.+..+.+.-.+++.+-. ..|+..-+..
T Consensus 911 RDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~t 990 (1666)
T KOG0985|consen 911 RDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVT 990 (1666)
T ss_pred cCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHH
Confidence 000 0011122223333333344333333332110 1344445566
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCC--CCCCHHhHHHHHHHhc---------------------------ccCChHHHHHH
Q 004733 459 INGFLLNGFPVQGLQHFSELLMSE--LRPDEYTLSVALSSCA---------------------------RISSLRHGKQI 509 (733)
Q Consensus 459 i~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~---------------------------~~~~~~~a~~~ 509 (733)
+.++...+-+.+-+++++++.-.. +.-+...-+.++-... ..+-+++|..+
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~i 1070 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAI 1070 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHH
Confidence 677777777888888887775322 1111111111221111 12222333333
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH
Q 004733 510 HGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ 589 (733)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 589 (733)
|+... .+....+.+++ ..+..|+|.++-++.. .+..|..+..+-.+.|...+|++-|-+. -|+
T Consensus 1071 fkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika-------dDp 1133 (1666)
T KOG0985|consen 1071 FKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDP 1133 (1666)
T ss_pred HHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCc
Confidence 32221 11111111111 2244445554444443 3457999999999999999998776542 366
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAA 669 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 669 (733)
..|.-+++.+.+.|.|++-..++...+++ .-+|..+ +.|+-+|++.++..+-.+++. .|+.........-|..
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhh
Confidence 78999999999999999999999988877 6666654 468899999999998887764 5777888888888999
Q ss_pred hCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 670 HGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 670 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
.|.++.|.-+|.. .+-|..|+..+...|.+..|...-++.
T Consensus 1207 ~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999988877764 345777888888888888777665543
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=8.1e-09 Score=96.38 Aligned_cols=286 Identities=14% Similarity=0.049 Sum_probs=154.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 004733 367 RNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHN 446 (733)
Q Consensus 367 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 446 (733)
.|++.+|++.+.+-.+.+-.|-... ..-..+.-..|+.+.+-..+.+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~---------------------------------l~aA~AA~qrgd~~~an~yL~e 143 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAY---------------------------------LLAAEAAQQRGDEDRANRYLAE 143 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHH---------------------------------HHHHHHHHhcccHHHHHHHHHH
Confidence 5888888888888766654443322 2334556667788888777777
Q ss_pred cCCC----ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCch
Q 004733 447 MSPR----NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKM 522 (733)
Q Consensus 447 ~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 522 (733)
..++ +....-+........|+...|..-+.++.+.+ +-+........++|.+.|++.....+...+.+.+.-.+.
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 6532 33445555666777778888877777777765 223344556666667777777777766666666554432
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 004733 523 SLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHA 602 (733)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 602 (733)
..-.. ...+|+.+++-....+..+.-...|++.-.. .+-++..-..++.-+.+.
T Consensus 223 e~~~l------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 223 EAARL------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHHH------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHHHHHHHHHc
Confidence 21100 0123444444444444444444444444332 233334444445555555
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHH
Q 004733 603 GLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIA 680 (733)
Q Consensus 603 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 680 (733)
|+.++|.++.++..++ +..|+ ...++. ..+-++.+.-++..++.. .+.++..+.++...|.+++.+.+|...+
T Consensus 277 ~~~~~A~~~i~~~Lk~-~~D~~---L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 277 GDHDEAQEIIEDALKR-QWDPR---LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred CChHHHHHHHHHHHHh-ccChh---HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555555 44443 111111 123333333333333222 1222344555556666666666666666
Q ss_pred HHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 681 GLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 681 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
+.+.+..|+ ...|..++.++.+.|+.++|..+.++..
T Consensus 352 eaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 352 EAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 666655554 3445666666666666666666666554
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.5e-06 Score=87.93 Aligned_cols=233 Identities=11% Similarity=0.044 Sum_probs=157.3
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004733 452 IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITL 531 (733)
Q Consensus 452 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (733)
+..|+.+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.+++-.+++.+.++....|.+. +.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 34688888888888888888776643 3467788888999999999999888888888877776665 578888
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 004733 532 YAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRI 611 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 611 (733)
|++.++..+-++++. .||......+..-|...|.++.|.-+|.. ...|..|...+...|.++.|...
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888877766643 45666666666777777777777655543 23355566666666766666654
Q ss_pred HHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 612 FDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 612 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
-++. .+..+|..+..++...+.+.-|.-. -+..--..+-...++..|...|-|++-+.+++..+.+..-+.
T Consensus 1243 aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1243 ARKA-------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred hhhc-------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 4433 2455777777777665554433211 001222344466778888888888888888888888888888
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHH
Q 004733 692 SVYVLLSNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~ 715 (733)
..+.-|+-.|.+- +.++..+.++
T Consensus 1314 gmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHH
Confidence 8888887655543 3444444443
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=2.2e-10 Score=103.06 Aligned_cols=225 Identities=12% Similarity=0.112 Sum_probs=169.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 004733 456 NTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKC 535 (733)
Q Consensus 456 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (733)
+.+.++|.+.|.+.+|.+.|+.-......|| +|..+...|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d-------------------------------------TfllLskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD-------------------------------------TFLLLSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh-------------------------------------HHHHHHHHHHHh
Confidence 3455666777777777776666665532232 334455666677
Q ss_pred CCHHHHHHHHHhcCC--CChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 004733 536 GDLDCSLRVFNMMIE--KDTISW-NALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIF 612 (733)
Q Consensus 536 ~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 612 (733)
.+++.|+.++.+..+ |..+|| ..+.+.+-..++.++|.++++...+.. +.+......+...|.-.++++-|+.+|
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHH
Confidence 777777777777664 433443 345566777788888999998888854 344555666667777888889999999
Q ss_pred HHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC---CCCC--hhhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 613 DSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH---IQAR--SDNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 613 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
+++++. |+ .+++.|+.+.-++.-.++++-++.-|++.. ..|+ .++|..+.......||+..|.+.++.++..+
T Consensus 348 RRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 998887 64 467788888888888888888888877654 2333 4578888888889999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 688 QDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 688 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
|++...++.|+..-.+.|+.++|+.++....+..
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999999999877643
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=3.2e-10 Score=97.45 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=71.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhh
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLG 636 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 636 (733)
|.-.|...|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++..+. .|+ .++.|....-+|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~FLC 114 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhHHHH
Confidence 334444444555554444444442 232 233444444444445555555444444432 222 334444444444
Q ss_pred hcCChHHHHHHHHhcCCCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHH
Q 004733 637 RAGYLDEAERVINSQHIQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
..|++++|...|++....|. ..+|..+..+..+.|+++.|...++++++.+|+.+.....++..+.+.|++-.|.-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 44555555544444332222 22344444444444555555555555555555554444444544555555555544
Q ss_pred HHHHHHhCC
Q 004733 713 IRELLKRTG 721 (733)
Q Consensus 713 ~~~~~~~~~ 721 (733)
+++.....+
T Consensus 195 ~~~~~~~~~ 203 (250)
T COG3063 195 YLERYQQRG 203 (250)
T ss_pred HHHHHHhcc
Confidence 444444433
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.2e-07 Score=96.06 Aligned_cols=479 Identities=14% Similarity=0.104 Sum_probs=256.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHh---h-ccCchHHH-------------------HHH----HHHHHHhC
Q 004733 166 ENGYEDIGIGLFREMHKLDVRRDNYSFASVLSV---C-DAGLLEFG-------------------RQL----HSLVTKSG 218 (733)
Q Consensus 166 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~-~~~~~~~a-------------------~~~----~~~~~~~~ 218 (733)
..++++.++.-+......+...+..++..+... + ..++.+++ ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 345667777777776666666666666555432 2 44444444 211 12222234
Q ss_pred CCCchHHHHHHHHHhHhcCChHHHHHHHHhh-hcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004733 219 FSCLVSVVNALITMYFNCGNVVDACKVFEEA-KGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSV 297 (733)
Q Consensus 219 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 297 (733)
+.-+..+|..|.-++..+|+++.+.+.|++. +...-....|+.+...+...|.-..|+.+++.-....-.|+..+-..+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 4556777777777777788888888888773 333334556777777777777777777777765544333433332222
Q ss_pred HH-HccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--------CCcccHHHHHHHHHhc-
Q 004733 298 MS-ACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--------KDIVSWNTMISTYAQR- 367 (733)
Q Consensus 298 l~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~- 367 (733)
.. .|. -+.+..++++++-.+... .....|-.+.-+|...
T Consensus 399 asklc~-------------------------------e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A 447 (799)
T KOG4162|consen 399 ASKLCI-------------------------------ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA 447 (799)
T ss_pred HHHHHH-------------------------------hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh
Confidence 21 121 223334443333333221 1222333333333221
Q ss_pred ----------CChHHHHHHHHHHHHCC-CCCChhhHHHHHHhhcc-hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcC
Q 004733 368 ----------NLGRSAILAYLEMQSVG-IRPDEFTFGSLLASSGF-IEMVEMIHAFVFINGIITNIQVSNALISAYAKNE 435 (733)
Q Consensus 368 ----------g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (733)
..-.++++.+++..+.+ -.|+...|.++-.+..+ ++.|....+....-+-..+...+..+.-.+...+
T Consensus 448 ~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 448 RQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 11245566666665533 34544444444433333 4555555555555444445555555555555566
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHC--CCCCCHHhHHHHHHHhcccCChHHHHHHH
Q 004733 436 RIKQAYQIFHNMSP---RNIITWNTLINGFLLNGFPVQGLQHFSELLMS--ELRPDEYTLSVALSSCARISSLRHGKQIH 510 (733)
Q Consensus 436 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 510 (733)
++.+|+.+.+.... .|-.....-+..-..-++.++++.....+... ...+-.. .++-....+..
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~-----------~~~~g~~~~lk 596 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ-----------TLDEGKLLRLK 596 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh-----------hhhhhhhhhhh
Confidence 66666666554321 11110000111111133444444433333220 0000000 00000000000
Q ss_pred HHHHH--cCCCCchhHHHHHHHHHH---hcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 511 GYVLK--NNLISKMSLGNAMITLYA---KCGDLDCSLRVFNMMIEKDT------ISWNALISAYAQHGEGKEAVSCFKAM 579 (733)
Q Consensus 511 ~~~~~--~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~ 579 (733)
..+.- ....-.+.++..+..... +.-..+..+..+.....|+. ..|......+.+.++.++|...+.+.
T Consensus 597 ~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 597 AGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred cccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 00000 001111222222222111 11111122122222222332 24555667788889999999888888
Q ss_pred HHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHH--HHHhcC-CC
Q 004733 580 QDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAER--VINSQH-IQ 654 (733)
Q Consensus 580 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~ 654 (733)
.+ +.|- ...|......+...|.+++|.+.|..... +.|+ +.+...+..++.+.|+..-|.. ++..+. ..
T Consensus 677 ~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 677 SK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred Hh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 77 4444 45677777788899999999999999884 5776 6688999999999998777766 777655 44
Q ss_pred C-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch
Q 004733 655 A-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 655 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
| ++..|..+...+.+.||.+.|...|+.+.++.+.+|.
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 4 5678999999999999999999999999999988774
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.5e-08 Score=91.55 Aligned_cols=270 Identities=11% Similarity=0.035 Sum_probs=186.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHH-Hhh-ccCchHHHHHHHHHHHHhCCCCc---hHHHHHHHHHhHhcCChHH
Q 004733 167 NGYEDIGIGLFREMHKLDVRRDNYSFASVL-SVC-DAGLLEFGRQLHSLVTKSGFSCL---VSVVNALITMYFNCGNVVD 241 (733)
Q Consensus 167 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~-~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~ 241 (733)
+.++++|.++|-+|.+. .|...-.+..+ +.+ +.|..+.|..++..+.++.--+. ......|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46788888888888772 33333333333 455 88889999988888877532221 2344557777899999999
Q ss_pred HHHHHHhhhcC-CCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCC
Q 004733 242 ACKVFEEAKGY-VCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFE 320 (733)
Q Consensus 242 a~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~ 320 (733)
|..+|..+... .--......|+..|-...+|++|+++-+++.+.+-.+...-..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------- 180 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------- 180 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-------------------------
Confidence 99999987652 2234567789999999999999999999998876554433321
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004733 321 AYTSVSNAAITMYSSCGKIDEACMIFARLQE--K-DIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLA 397 (733)
Q Consensus 321 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 397 (733)
..|..|...+....+++.|...+.+..+ | ++..--.+.+.....|++++|.+.++...+.+..--+.
T Consensus 181 ---qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e------- 250 (389)
T COG2956 181 ---QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE------- 250 (389)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH-------
Confidence 2245556666677888889999888776 2 33444456677888999999999999887754221111
Q ss_pred hhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhCCCchHHHHHH
Q 004733 398 SSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS--PRNIITWNTLINGFLLNGFPVQGLQHF 475 (733)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 475 (733)
+...|..+|...|+.++...++..+. .++...-..+...-....-.+.|...+
T Consensus 251 -------------------------vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 251 -------------------------VLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred -------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHH
Confidence 22678889999999999988888776 334444444444444555566666666
Q ss_pred HHHHHCCCCCCHHhHHHHHHHhccc
Q 004733 476 SELLMSELRPDEYTLSVALSSCARI 500 (733)
Q Consensus 476 ~~m~~~~~~p~~~~~~~ll~~~~~~ 500 (733)
.+-+.+ +|+...+..++......
T Consensus 306 ~~Ql~r--~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 306 TRQLRR--KPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHhh--CCcHHHHHHHHHhhhcc
Confidence 665554 58888888877765543
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=4.6e-07 Score=90.10 Aligned_cols=456 Identities=11% Similarity=0.067 Sum_probs=249.7
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhc-CCCCccchHHHHHHHHhcCChH
Q 004733 195 VLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKG-YVCDHISYNVMMDGLASVGRVE 273 (733)
Q Consensus 195 ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 273 (733)
++..+..+.+...+...+.+++ +.+....+.....-.+...|+.++|......... -..+.+.|..+.-.+....+++
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH
Confidence 3334456666777777776666 3333444555445556677888888888877443 2236677888887788888999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--
Q 004733 274 EALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE-- 351 (733)
Q Consensus 274 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-- 351 (733)
+|+..|...... .||... ++.-+.-.-++.|+++.....-..+.+
T Consensus 93 eaiKcy~nAl~~--~~dN~q-------------------------------ilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 93 EAIKCYRNALKI--EKDNLQ-------------------------------ILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHHHHHhc--CCCcHH-------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 999999888765 333221 122222223344555555554444444
Q ss_pred -CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHH
Q 004733 352 -KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVG-IRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALIS 429 (733)
Q Consensus 352 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (733)
.....|..+..++.-.|+...|..++++..+.. -.|+...+...... -.-..
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~--------------------------Ly~n~ 193 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL--------------------------LYQNQ 193 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH--------------------------HHHHH
Confidence 344568888888888999999999999987754 34565555322110 11112
Q ss_pred HHHhcCCHHHHHHHHhhcCCC--Chh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhc-ccCChHH
Q 004733 430 AYAKNERIKQAYQIFHNMSPR--NII-TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCA-RISSLRH 505 (733)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~ 505 (733)
...+.|..+.|.+.+....+. |-. .-..-...+.+.++.++|..++..++.+. ||..-|...+..+. +..+..+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHH
Confidence 344556666666666554421 111 12233445666777777777777777764 66655554444433 2323222
Q ss_pred HH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHH--
Q 004733 506 GK-QIHGYVLKNNLISKMSLGNAMITLYAKCGDL-DCSLRVFNMMIEKD-TISWNALISAYAQHGEGKEAVSCFKAMQ-- 580 (733)
Q Consensus 506 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 580 (733)
+. .++....+.-........ +--......++ +..-.++..+.+.+ +.++..+...|-.-...+-..++.-.+.
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~R--lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~ 349 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRR--LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHS 349 (700)
T ss_pred HHHHHHHHHhhcCcccccchh--ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhh
Confidence 22 444444332111110000 00000111111 22222333333322 2233333333332211111111111111
Q ss_pred --HcC--------C-CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHH
Q 004733 581 --DVG--------R-IKPDQ--ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAER 646 (733)
Q Consensus 581 --~~~--------~-~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 646 (733)
..| . -+|.. .++..++..+-..|+++.|..+++.... ..|+ ++.|..=.+++...|.+++|..
T Consensus 350 L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 350 LSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred cccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHH
Confidence 111 0 13443 3455566778888888888888888874 4666 3466666778888888888888
Q ss_pred HHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc-------hHHHHH--HHHHHhcCChHHHHHHHH
Q 004733 647 VINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP-------SVYVLL--SNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 647 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l--~~~~~~~g~~~~A~~~~~ 715 (733)
++++.. ..||...-...+....+.++.++|..++-+....+-+-. -.|+.+ |.+|.++|++-+|++=+.
T Consensus 427 ~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 427 WLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 888766 344444444666667788888888888777665443111 123333 567888888877776554
Q ss_pred HH
Q 004733 716 LL 717 (733)
Q Consensus 716 ~~ 717 (733)
+.
T Consensus 507 ~i 508 (700)
T KOG1156|consen 507 EI 508 (700)
T ss_pred hH
Confidence 43
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.4e-08 Score=93.07 Aligned_cols=427 Identities=10% Similarity=0.014 Sum_probs=221.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh--ccCchHHHHHHHHHHHHhCCCCc-hHHHHHHHHHh
Q 004733 157 YNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC--DAGLLEFGRQLHSLVTKSGFSCL-VSVVNALITMY 233 (733)
Q Consensus 157 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 233 (733)
+....+-|.++|++++|+++|...++ ..||..+|-+-..+| ..|+|+.+.+.-...++. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 45566788999999999999999988 578855655666666 899999998888777765 344 44566666777
Q ss_pred HhcCChHHHHHHHHhh--hcCCCCccchHHHHHHHHhcCChHHHHHHHHH-HHHc--CCCCChhhHHHHHHHcc-CchhH
Q 004733 234 FNCGNVVDACKVFEEA--KGYVCDHISYNVMMDGLASVGRVEEALIRFRD-MLVA--SLRPSELTFVSVMSACL-CPRVG 307 (733)
Q Consensus 234 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~--~~~p~~~t~~~ll~~~~-~~~~~ 307 (733)
-..|++++|+.-..-. .+--.|..+ ..++.-..+ ..+..-.++ |.++ .+.|......+.+..+. ++...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~-~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASI-EPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchh-HHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 7778887776433221 110011111 111111111 112222222 2212 24566665555555543 11000
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhc-CCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004733 308 YQVHAQAMKSGFEAYTSVSNAAITMYSSC-GKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIR 386 (733)
Q Consensus 308 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 386 (733)
. ...+-..|...-..+-..+... ..+.+|...+.+-.. ..... ...+..+.-+ +.|...
T Consensus 269 ~------~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~------~~~~~--~~~n~~d~~l---e~~A~a--- 328 (606)
T KOG0547|consen 269 F------DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL------GSESS--LSVNEIDAEL---EYMAEA--- 328 (606)
T ss_pred c------cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh------hhhhh--ccccccchhH---HHHHHH---
Confidence 0 0000001111111111111111 122233322222111 00000 0011111111 111110
Q ss_pred CChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHH
Q 004733 387 PDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFL 463 (733)
Q Consensus 387 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 463 (733)
+ ......+.-.|+.-.|..-|+... +.+...|--+...|.
T Consensus 329 -----l--------------------------------~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~ 371 (606)
T KOG0547|consen 329 -----L--------------------------------LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA 371 (606)
T ss_pred -----H--------------------------------HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHh
Confidence 0 001111233455555555555543 223333666677788
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004733 464 LNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLR 543 (733)
Q Consensus 464 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 543 (733)
...+.++....|++..+.+ |. ++.+|..-...+.-.+++++|..
T Consensus 372 d~~~~~~~~~~F~~A~~ld--p~----------------------------------n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLD--PE----------------------------------NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhccHHHHHHHHHHHhcC--CC----------------------------------CCchhHhHHHHHHHHHHHHHHHH
Confidence 8888888888888877654 22 12222223333334456677777
Q ss_pred HHHhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 004733 544 VFNMMIEK---DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYG 620 (733)
Q Consensus 544 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 620 (733)
-|++...- ++..|-.+.-+..+.+++++++..|++.++. ++..+..|+.....+..++++++|.+.|+..+..
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 77766543 3334555555555677788888888887764 3444567777777788888888888888877643
Q ss_pred CCCC-------chH--HHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 621 FIPA-------EDH--LSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 621 ~~p~-------~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
.|+ ... -..++..-. .+++..|.+++++.. ..|... .+..+...-.+.|+.++|+.++++...+-..
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred -ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333 111 111111112 267778888887765 455433 5677777778888888888888887766544
Q ss_pred Cc
Q 004733 690 KP 691 (733)
Q Consensus 690 ~~ 691 (733)
..
T Consensus 570 ~~ 571 (606)
T KOG0547|consen 570 ES 571 (606)
T ss_pred HH
Confidence 33
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=3e-06 Score=84.46 Aligned_cols=567 Identities=12% Similarity=0.085 Sum_probs=288.4
Q ss_pred HHHHhhccChHHHHHHHHhcCCCCc---chhhHHHHHhhccCChhHHHHHhccCC---CCChhhHHHHHHHHhhcCChhH
Q 004733 99 LSLYKNARDLVSVKRVFSEIQNPDV---YSWTTFLSACTKMGHVDYACEVFDKMP---DRDLPVYNAMITGCTENGYEDI 172 (733)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 172 (733)
.-.+...|+-++|....+.+...|+ .-|..+.-.+-...++++|++.+.... ..|...|.-+.-.=++.|+++.
T Consensus 48 GL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 48 GLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred cchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 3334445555555555555554332 234333333334456666666665443 2344455544444455666666
Q ss_pred HHHHHHHHHHcCCCCChhhHH-HHHHhh-ccCchHHHHHHHHHHHHhCC-CCchHHHHHHH------HHhHhcCChHHHH
Q 004733 173 GIGLFREMHKLDVRRDNYSFA-SVLSVC-DAGLLEFGRQLHSLVTKSGF-SCLVSVVNALI------TMYFNCGNVVDAC 243 (733)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~-~ll~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li------~~~~~~~~~~~a~ 243 (733)
..+.-....+. .|....+- ....+. -.|++..|..++++..+... .|+...+.-.. ....+.|..+.|.
T Consensus 128 ~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 128 YLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 66665555552 34433322 222233 66777777777777766542 34443332222 2345667777777
Q ss_pred HHHHhhhcCCCCccch-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcc
Q 004733 244 KVFEEAKGYVCDHISY-NVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAY 322 (733)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~ 322 (733)
+.+.......-|-..+ .+-...+.+.++.++|..++..+... .||..-|...+..
T Consensus 206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~---------------------- 261 (700)
T KOG1156|consen 206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK---------------------- 261 (700)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH----------------------
Confidence 7776654322333332 34556677888899999998888876 4666666544322
Q ss_pred hHHHHHHHHHHHhcCCHHHHH-HHHHhccc--CCcccHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhhHHHHHHh
Q 004733 323 TSVSNAAITMYSSCGKIDEAC-MIFARLQE--KDIVSWNTMISTYAQ-RNLGRSAILAYLEMQSVGIRPDEFTFGSLLAS 398 (733)
Q Consensus 323 ~~~~~~li~~~~~~g~~~~a~-~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 398 (733)
++.+.-+.-++. .+|....+ |-...-.-+--.... ..-.+..-.++..+.+.|+.+--..+.++..-
T Consensus 262 ---------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 262 ---------ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred ---------HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 222111222222 34443332 100000000000111 11223334556666777766555554444332
Q ss_pred hcchHHHHHHHHHHHH----hC----------CccchhHH--HHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHH
Q 004733 399 SGFIEMVEMIHAFVFI----NG----------IITNIQVS--NALISAYAKNERIKQAYQIFHNMSPRNII---TWNTLI 459 (733)
Q Consensus 399 ~~~~~~~~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li 459 (733)
-...+..+++.-.+.. .| -+|+...| -.++..|-+.|+++.|...++......+. .|..-.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 2222222222222111 11 13444333 35667778888888888888877643332 344445
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHH----------HH
Q 004733 460 NGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNA----------MI 529 (733)
Q Consensus 460 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------l~ 529 (733)
+.+.-.|+.+.|..++.+..+.+ .||...-..-..-..+.+..++|.++...+.+.|. +..-+-. =.
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhh
Confidence 67778888888888888887765 56665555666666778888888888888877664 2111111 12
Q ss_pred HHHHhcCCHHHHHHHHHhcCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 004733 530 TLYAKCGDLDCSLRVFNMMIE------KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG 603 (733)
Q Consensus 530 ~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 603 (733)
.+|.+.|++..|++-|..+.+ .|..-|. .-|.+.|-+..=+++++.--. +..++.-+.+
T Consensus 490 ~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfh---tyc~rk~tlrsYv~ll~~~d~---L~~~p~y~~A--------- 554 (700)
T KOG1156|consen 490 EAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFH---TYCMRKGTLRSYVELLEWEDN---LRSSPYYLRA--------- 554 (700)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHH---HHHHhcCcHHHHHHHHHHHHh---hccChHHHHH---------
Confidence 456666777667666665532 1111111 012233333322222221111 1111111110
Q ss_pred CHHHHHHHHHHhHhhcC-CCCCchHHHHH----HHHhhhcC-ChHHHHHHHHh--------------cCCCCChhhHHHH
Q 004733 604 LVDDGTRIFDSMVNDYG-FIPAEDHLSCM----LDLLGRAG-YLDEAERVINS--------------QHIQARSDNWWAL 663 (733)
Q Consensus 604 ~~~~A~~~~~~~~~~~~-~~p~~~~~~~l----~~~~~~~g-~~~~A~~~~~~--------------~~~~~~~~~~~~l 663 (733)
...|+++|=.|..... ..+.......+ -....++. +-..|...-.. .+..+|.+ -+
T Consensus 555 -a~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~ 630 (700)
T KOG1156|consen 555 -AKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PF 630 (700)
T ss_pred -HHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---ch
Confidence 1234555555543310 00111111111 11111111 11111111110 11223433 23
Q ss_pred HHHHHhhCC-HHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 664 FSACAAHGN-LRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 664 ~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
...+.+..+ .++|..++..+....+++...|..-..+|.+.|++.-|...+++......
T Consensus 631 gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~ 690 (700)
T KOG1156|consen 631 GEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGIHG 690 (700)
T ss_pred hhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 444555555 57799999999999999999999999999999999999999988876544
No 70
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=6.5e-07 Score=89.90 Aligned_cols=256 Identities=13% Similarity=0.137 Sum_probs=146.4
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh--hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHH
Q 004733 431 YAKNERIKQAYQIFHNMSPRNI--ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQ 508 (733)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 508 (733)
.....++.+|+.+++.+...++ .-|..+...|...|+++.|.++|.+. ..+.-.|..|.+.|++..|.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence 3344455555555555543322 23444455555555555555555431 122334455555555555555
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC
Q 004733 509 IHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD 588 (733)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 588 (733)
+-.+. .|.......|-+-..-+-+.|++.+|+++|-.+-.|+. -|..|-+.|..+..+++.++- .|+
T Consensus 813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~------h~d 879 (1636)
T KOG3616|consen 813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH------HGD 879 (1636)
T ss_pred HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh------Chh
Confidence 43332 22233444555555666777888888888888777764 367788888888888877763 333
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCCh-----hhH-
Q 004733 589 --QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARS-----DNW- 660 (733)
Q Consensus 589 --~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~- 660 (733)
..|...+..-+...|+.+.|...|-+.- -|..-+.+|...+.|++|.++-+.-. ..+. ..|
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwa 948 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWA 948 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHH
Confidence 3456666777777888888877665543 24455667777777777776655322 0000 011
Q ss_pred -----HHHHHH-------------HHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 661 -----WALFSA-------------CAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 661 -----~~l~~~-------------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
.+.+.. .+..+.|+-|..+..-+.+ ..-+.++..++.-+...|++++|-+.+-+..+.+
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 011112 2233444444444433332 3345677788888889999999988887766543
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.2e-07 Score=87.05 Aligned_cols=267 Identities=13% Similarity=0.048 Sum_probs=181.4
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHh-HHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 004733 449 PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYT-LSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNA 527 (733)
Q Consensus 449 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 527 (733)
+.|+.....+...+...|+.++|...|++....+ |+..+ .....-.+...|+.+....+...+....- .+...|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhh
Confidence 4567778888888888888888888888876543 44322 11122223456667766666555543221 11111222
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccC
Q 004733 528 MITLYAKCGDLDCSLRVFNMMIEKDTI---SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKP-DQATFTAVLSACSHAG 603 (733)
Q Consensus 528 l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~ 603 (733)
-.......++++.|+.+-++..+.++. .|-.-...+...+++++|.-.|+..+. +.| +-.+|..|+.+|...|
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhc
Confidence 222334457788888888877654433 333334667788899999999998887 444 4578999999999999
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHHH-HHhh-hcCChHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhhCCHHHHHHH
Q 004733 604 LVDDGTRIFDSMVNDYGFIPAEDHLSCML-DLLG-RAGYLDEAERVINSQH-IQARS-DNWWALFSACAAHGNLRLGRII 679 (733)
Q Consensus 604 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 679 (733)
++.+|.-+-+...+. +..+..++..+. ..+. ...--++|.+++++-. ..|+- .....+...|...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999988887777655 344455555552 3332 2233578888888755 66664 4667777888888999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 004733 680 AGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIK 724 (733)
Q Consensus 680 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (733)
+++.+...|+ ...+..|+.++...+.+.+|.++|....+.++..
T Consensus 461 Le~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 461 LEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 9999888886 4568889999999999999999988887766543
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=5.4e-07 Score=88.59 Aligned_cols=278 Identities=13% Similarity=0.128 Sum_probs=158.4
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--------CCcc----------cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 004733 330 ITMYSSCGKIDEACMIFARLQE--------KDIV----------SWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFT 391 (733)
Q Consensus 330 i~~~~~~g~~~~a~~~~~~~~~--------~~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 391 (733)
...++..|++.+|+++++...+ .|.. .---+...+-..|+.++|..++........ +|...
T Consensus 182 Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~ 260 (652)
T KOG2376|consen 182 ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPS 260 (652)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchH
Confidence 4457788999999999988722 1111 122344556678999999999999887643 33322
Q ss_pred HHHH----HHhhcc---hH-HHHHHHHHHHH-----------hCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-
Q 004733 392 FGSL----LASSGF---IE-MVEMIHAFVFI-----------NGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRN- 451 (733)
Q Consensus 392 ~~~l----l~~~~~---~~-~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 451 (733)
.... +..... .+ .....++.... ..-.-....-+.++..| .+..+.+.++....+...
T Consensus 261 ~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p 338 (652)
T KOG2376|consen 261 LAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSP 338 (652)
T ss_pred HHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCc
Confidence 2222 111111 11 00011111000 00000001112333333 455566777776666332
Q ss_pred hhhHHHHHHHH--HhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHH--------HHHHcCCCCc
Q 004733 452 IITWNTLINGF--LLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHG--------YVLKNNLISK 521 (733)
Q Consensus 452 ~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~ 521 (733)
...+..++... ++...+.++.+++....+....-........+......|+++.|.+++. .+.+.+..|
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P- 417 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP- 417 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh-
Confidence 23334444332 2233467777777776665422223455556667778899999999888 334444444
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIE------KDTI----SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQAT 591 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~ 591 (733)
.+..+++..+.+.++-+.|..++.+..+ +... ++..+...-.+.|+.++|..+++++.+.. ++|..+
T Consensus 418 -~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n--~~d~~~ 494 (652)
T KOG2376|consen 418 -GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN--PNDTDL 494 (652)
T ss_pred -hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC--CchHHH
Confidence 4446677788888887777777766541 2222 33334444457788899999999988854 567778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSM 615 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~ 615 (733)
...++.+|++. +++.|..+-+.+
T Consensus 495 l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 495 LVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhc-CHHHHHHHhhcC
Confidence 88888888775 577777765544
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-07 Score=92.46 Aligned_cols=474 Identities=13% Similarity=0.059 Sum_probs=232.8
Q ss_pred CcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHh
Q 004733 18 KELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANT 97 (733)
Q Consensus 18 ~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (733)
.-++.-+-.+++-+..+..++.|+-+-+++-.. .-|+..---+..++...|....|..+...-. -...+......
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l---~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~--le~~d~~cryL 87 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGL---TNDPADIYWLAQVLYLGRQYERAAHLITTYK--LEKRDIACRYL 87 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc---cCChHHHHHHHHHHHhhhHHHHHHHHHHHhh--hhhhhHHHHHH
Confidence 345566777788778888899998888888433 3344444445666666677666665554431 22345566677
Q ss_pred HHHHHhhccChHHHHHHHHhcCC-CCcchhhHH---------------------------HHHhhccCChhHHHHHhccC
Q 004733 98 ILSLYKNARDLVSVKRVFSEIQN-PDVYSWTTF---------------------------LSACTKMGHVDYACEVFDKM 149 (733)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l---------------------------~~~~~~~g~~~~a~~~~~~~ 149 (733)
....+.+..+|+++..++..+.. .++..|..- -..|....+.++|...+.+.
T Consensus 88 ~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~A 167 (611)
T KOG1173|consen 88 AAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEA 167 (611)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHH
Confidence 77788888888888888885421 111111000 01122222333333333333
Q ss_pred CCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCC----CCChhhHHHHHHhhccCchHH-HHHHHHHHHHhCCCCchH
Q 004733 150 PDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDV----RRDNYSFASVLSVCDAGLLEF-GRQLHSLVTKSGFSCLVS 224 (733)
Q Consensus 150 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~~~-a~~~~~~~~~~~~~~~~~ 224 (733)
..-|+..|..+...... ..-.+.+.++.+..... ..+......+........+++ ....-++..-.+..-++.
T Consensus 168 l~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 168 LLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred HhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 32233222222111000 00111111111111000 011111111111100000000 000000000011222333
Q ss_pred HHHHHHHHhHhcCChHHHHHHHHhhhcCC-CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccC
Q 004733 225 VVNALITMYFNCGNVVDACKVFEEAKGYV-CDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLC 303 (733)
Q Consensus 225 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 303 (733)
+.....+-+...+++.+..++++.+-... ++...+..-|..+...|+..+-..+=.+|.+.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------------------ 307 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------------------ 307 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh------------------
Confidence 33344444445555555555555543322 23444444444455555555444444444443
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCc---ccHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 304 PRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDI---VSWNTMISTYAQRNLGRSAILAYLEM 380 (733)
Q Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m 380 (733)
.|..+..|-++.--|.-.|+.++|.+.|.+...-|. ..|-.+...|+..|.-+.|+..+...
T Consensus 308 ---------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 308 ---------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred ---------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 122222233334444455666666666666554222 24555566666666666666655554
Q ss_pred HHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHH
Q 004733 381 QSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNT 457 (733)
Q Consensus 381 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 457 (733)
-+.-......+ -.+.--|.+.++...|.++|.+.. +.|+...+-
T Consensus 373 arl~~G~hlP~---------------------------------LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 373 ARLMPGCHLPS---------------------------------LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred HHhccCCcchH---------------------------------HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 33110000000 012234566677777777776653 445556666
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC--CCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 004733 458 LINGFLLNGFPVQGLQHFSELLMS--ELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKC 535 (733)
Q Consensus 458 li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (733)
+.-.....+.+.+|..+|+..+.. .+.+...+ -..+++.|.++|.+.
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~-------------------------------w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF-------------------------------WEPTLNNLGHAYRKL 468 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccc-------------------------------hhHHHHhHHHHHHHH
Confidence 555555566667777776665421 01111111 123456777888888
Q ss_pred CCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004733 536 GDLDCSLRVFNMMI---EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSA 598 (733)
Q Consensus 536 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~ 598 (733)
+++++|+..++... ..+..++.++.-.|...|+++.|.+.|.+... +.||..+-..++..
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCccHHHHHHHHH
Confidence 88888888888765 45777888888888888888888888888877 67877665555553
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=3.9e-06 Score=85.65 Aligned_cols=239 Identities=12% Similarity=0.082 Sum_probs=153.2
Q ss_pred HHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHH--------cccccCchhhHhHHHH
Q 004733 30 NLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALR--------AGLKAYPHVANTILSL 101 (733)
Q Consensus 30 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~ 101 (733)
.|.--|+.+.|.+-..-+ -+...|..+.+.|.+.++.+.|.-++-+|.. +..+-+...-....-.
T Consensus 737 fyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 456678888887777666 2456788999999988888888888877742 1112222333333334
Q ss_pred HhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHHHHHhccCCCCCh-hhHHHHHHHHhhcCChhHHHHHHHHH
Q 004733 102 YKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDL-PVYNAMITGCTENGYEDIGIGLFREM 180 (733)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m 180 (733)
....|-+++|+.+++.... |..|=..|...|.|++|.++-+.-.+... .+|..-..-+-..++.+.|++.|++.
T Consensus 810 AieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 4466788888888876543 44555667788888888888766554433 25555555566667777777777653
Q ss_pred H----------HcC---------CCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChH
Q 004733 181 H----------KLD---------VRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVV 240 (733)
Q Consensus 181 ~----------~~~---------~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 240 (733)
. ... -..|..-|...-..+ ..|+.+.|+.++..... |-++++..|-.|+.+
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTD 955 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCch
Confidence 1 111 011222222222333 67777777777776553 445677777788888
Q ss_pred HHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHcc
Q 004733 241 DACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACL 302 (733)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 302 (733)
+|-++-++-. |....-.+.+.|-..|++.+|+..|.+.. +|...|+.|.
T Consensus 956 kAa~iA~esg----d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcK 1004 (1416)
T KOG3617|consen 956 KAARIAEESG----DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCK 1004 (1416)
T ss_pred HHHHHHHhcc----cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 8887776643 45556677888889999999999887754 4555555554
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=1.7e-09 Score=102.35 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=140.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 004733 553 TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCML 632 (733)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 632 (733)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 4567778889999999999999999998853 334567788888999999999999999999876 233456778889
Q ss_pred HHhhhcCChHHHHHHHHhcCCC----CChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChH
Q 004733 633 DLLGRAGYLDEAERVINSQHIQ----ARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWE 708 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 708 (733)
..+...|++++|.+.+++.... .....+..+...+...|++++|...++++.+..|+++..+..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999987622 233466777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 004733 709 EAANIRELLKRT 720 (733)
Q Consensus 709 ~A~~~~~~~~~~ 720 (733)
+|..++++..+.
T Consensus 187 ~A~~~~~~~~~~ 198 (234)
T TIGR02521 187 DARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=3.5e-09 Score=102.46 Aligned_cols=189 Identities=16% Similarity=0.108 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHh
Q 004733 525 GNAMITLYAKCGDLDCSLRVFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACS 600 (733)
Q Consensus 525 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~ 600 (733)
|......+...|+.++|...|+...+ | +...|+.+...+...|++++|...|++..+ +.|+ ..++..+..++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence 44444455556666666666655542 2 344556666666666666666666666665 3344 334555555555
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHH
Q 004733 601 HAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIA 680 (733)
Q Consensus 601 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 680 (733)
..|++++|.+.++...+. .|+..........+...++.++|.+.+.+....-++..|. ........|+...+ ..+
T Consensus 144 ~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLM 218 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHH
Confidence 666666666666666543 3332211122222334455666666664322111111121 11112223333222 122
Q ss_pred HHHh-------ccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 681 GLLL-------EREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 681 ~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
+.+. +..|..+.+|..+|.+|...|++++|+..|++..+..
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 2334445566666666666666666666666665544
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1.1e-08 Score=102.90 Aligned_cols=232 Identities=16% Similarity=0.188 Sum_probs=165.4
Q ss_pred HhHHHHHHHhcccCChHHHHHHHHHHHHc-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-C
Q 004733 488 YTLSVALSSCARISSLRHGKQIHGYVLKN-----N-LISKM-SLGNAMITLYAKCGDLDCSLRVFNMMIE-------K-D 552 (733)
Q Consensus 488 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~ 552 (733)
.+...+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++++|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555666677777777777766655443 2 12222 2234467788888999999988888752 2 1
Q ss_pred ---hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcC--C
Q 004733 553 ---TISWNALISAYAQHGEGKEAVSCFKAMQDV-----GRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYG--F 621 (733)
Q Consensus 553 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~ 621 (733)
..+++.|..+|.+.|++++|..++++..+- |...|... .++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 236777888899999999988888776541 21223333 366667788899999999999988776533 2
Q ss_pred CCC----chHHHHHHHHhhhcCChHHHHHHHHhcC-------C--CCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhc--
Q 004733 622 IPA----EDHLSCMLDLLGRAGYLDEAERVINSQH-------I--QAR-SDNWWALFSACAAHGNLRLGRIIAGLLLE-- 685 (733)
Q Consensus 622 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 685 (733)
.++ ..+++.|...|...|++++|.++++++. . .+. ...++.+...|.+.+.+..|.+++.++..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 3478899999999999999999998755 1 222 33578888889888998888888888665
Q ss_pred --cCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 686 --REQDKP---SVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 686 --~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
..|+.+ ..|..|+.+|..+|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345554 5688999999999999999999987763
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=6e-09 Score=110.56 Aligned_cols=212 Identities=13% Similarity=0.001 Sum_probs=151.0
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHH
Q 004733 501 SSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFK 577 (733)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 577 (733)
++.++|...++...+.+ +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44667777777666654 22455667777788889999999999998764 3 34577888888999999999999999
Q ss_pred HHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CC
Q 004733 578 AMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQ 654 (733)
Q Consensus 578 ~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 654 (733)
++.+ ..|+.. .+..++..+...|++++|...++++... ..|+ +..+..+..++...|+.++|...+.++. ..
T Consensus 397 ~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 397 ECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 9998 456643 3334444566688999999999998765 2343 4457778888999999999999998866 44
Q ss_pred CChhh-HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 655 ARSDN-WWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 655 ~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
|+... ...+...+...|+ .|...++.+.+..-..+.....+..+|.-.|+.+.+... +++.+.|
T Consensus 472 ~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44443 4445555666674 777777776664433222233366778888888877776 8777764
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=2.4e-07 Score=84.85 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=103.1
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh--ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCC
Q 004733 161 ITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC--DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGN 238 (733)
Q Consensus 161 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 238 (733)
+.-+...+++..|+.+++--...+- -........+..| +.|++++|...+..+.+.. .++...+-.|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 3445556778888888776553321 1223555566666 8888888888888777643 5566666667777777788
Q ss_pred hHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhC
Q 004733 239 VVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSG 318 (733)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g 318 (733)
+.+|..+-...+. ++-.-..|+....+.++-++...+-..+...- -|.-
T Consensus 107 Y~eA~~~~~ka~k---~pL~~RLlfhlahklndEk~~~~fh~~LqD~~--EdqL-------------------------- 155 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK---TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL--EDQL-------------------------- 155 (557)
T ss_pred HHHHHHHHhhCCC---ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH--HHHH--------------------------
Confidence 8888877766532 22223344455556666666555544443220 1111
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcccHHHHH-HHHHhcCChHHHHHHHHHHHH
Q 004733 319 FEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--KDIVSWNTMI-STYAQRNLGRSAILAYLEMQS 382 (733)
Q Consensus 319 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~ 382 (733)
+|....-..-.+.+|.+++.++.. |+-...|.-+ -+|.+..-++-+.++++--..
T Consensus 156 ---------SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 156 ---------SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 111112222346778888877766 3333444433 345566666666666666554
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=8.8e-07 Score=83.10 Aligned_cols=271 Identities=11% Similarity=-0.031 Sum_probs=194.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004733 420 NIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWN---TLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSS 496 (733)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 496 (733)
+......+..++...|+.+.|+..|++....|+.+.. .....+.+.|+.+....+...+.... .-....|..-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 3444478888899999999999999887644443322 22334567788888777777776542 2223333333344
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChHHHH
Q 004733 497 CARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI--EK-DTISWNALISAYAQHGEGKEAV 573 (733)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~ 573 (733)
.-...+++.|+.+-+..++.+.. +...+-.-..++...|+.++|.-.|+... .| +..+|..|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 44567778888777776654422 22233333456677899999999998764 43 6789999999999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 574 SCFKAMQDVGRIKPDQATFTAVL-SACS-HAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 574 ~~~~~~~~~~~~~p~~~~~~~ll-~~~~-~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
-.-+..... ++.+..+...+. ..|. ....-++|..++++.++ +.|+ ......+...+...|+.++++.++++
T Consensus 389 ~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 389 ALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 888777663 344555655542 3332 33345789999998874 4776 44667788889999999999999998
Q ss_pred cC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHH
Q 004733 651 QH-IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 651 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
.. ..||....+.+...+...+.+++|...|..++.++|++..+..-|
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 65 788888999999999999999999999999999999987765544
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=9.3e-11 Score=78.26 Aligned_cols=50 Identities=28% Similarity=0.576 Sum_probs=45.3
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcc
Q 004733 450 RNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCAR 499 (733)
Q Consensus 450 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 499 (733)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999888874
No 82
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.6e-10 Score=77.13 Aligned_cols=50 Identities=36% Similarity=0.655 Sum_probs=42.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 551 KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
||+.+||++|.+|++.|++++|.++|++|.+.| +.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 678888888888888888888888888888888 88888888888888764
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=8.1e-09 Score=109.57 Aligned_cols=178 Identities=13% Similarity=-0.029 Sum_probs=143.4
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 004733 535 CGDLDCSLRVFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTR 610 (733)
Q Consensus 535 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~ 610 (733)
.+++++|...+++..+ | +...+..+...+...|++++|...|+++.+. .|+ ...+..+...+...|++++|..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3568899999998874 3 5567888888889999999999999999995 465 4567788889999999999999
Q ss_pred HHHHhHhhcCCCCCch-HHHHHHHHhhhcCChHHHHHHHHhcC--CCCChh-hHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 004733 611 IFDSMVNDYGFIPAED-HLSCMLDLLGRAGYLDEAERVINSQH--IQARSD-NWWALFSACAAHGNLRLGRIIAGLLLER 686 (733)
Q Consensus 611 ~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 686 (733)
.++++.+. .|+.. .+..++..+...|++++|...+++.. .+|+.. .+..+..++...|++++|+..++++...
T Consensus 394 ~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99999865 55533 33344555677899999999998865 235444 4566777788999999999999999989
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 687 EQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 687 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
.|.+......++..|...| ++|...++++.+.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9998888999998888888 4888888887664
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.9e-09 Score=97.18 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=191.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC
Q 004733 425 NALISAYAKNERIKQAYQIFHNMS--PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS 502 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 502 (733)
+.+..+|.+.|.+.+|.+.|+.-. .+-+.||-.|-+.|.+..++..|+.++.+-.+. .|-.+||.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l----------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL----------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh-----------
Confidence 678899999999999999998865 567789999999999999999999999988775 47666663
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 503 LRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEK---DTISWNALISAYAQHGEGKEAVSCFKAM 579 (733)
Q Consensus 503 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 579 (733)
.-+...+...++.++|.++|+...+. ++....++...|.-.++++-|+.+++++
T Consensus 294 -----------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 294 -----------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -----------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 23445556668888999999888753 4445555667788889999999999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC
Q 004733 580 QDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA--EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR 656 (733)
Q Consensus 580 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 656 (733)
.+.| -.++..|+.+.-+|...+++|-++.-|++.... .-.|+ .++|..+.......|++.-|.+-|+-.. ..|+
T Consensus 351 LqmG--~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 351 LQMG--AQSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHhc--CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 9999 467788888888999999999999999998876 44455 5588889999999999999999998655 4444
Q ss_pred -hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 657 -SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 657 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
...++.+.-.-.+.|++++|..++..+....|+-......++
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 457788887888999999999999999999998766554443
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=2.6e-08 Score=85.92 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=157.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhc
Q 004733 526 NAMITLYAKCGDLDCSLRVFNMMIEKD---TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSH 601 (733)
Q Consensus 526 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~ 601 (733)
..+.-.|...|+...|..-+++.++.| ..+|..+...|.+.|+.+.|.+.|++..+ +.|+. ...|.....+|.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHh
Confidence 456678889999999999999988544 34778888889999999999999999998 45654 567777778888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRII 679 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 679 (733)
.|.+++|...|++........--..+|..+.-+..++|+.+.|.+.|++.. ..|+ +.....+.......|++..|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999998773333335688899999999999999999998765 4444 55778888889999999999999
Q ss_pred HHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 680 AGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 680 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
+++.....+.....+.+.+.+-...|+-+.|-++=.++.+.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999988888888888888888899999888887777654
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=1.2e-06 Score=89.65 Aligned_cols=290 Identities=13% Similarity=0.122 Sum_probs=143.3
Q ss_pred HHHhHhcCChHHHHHHHHhhhcCCCCccc-hHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHH
Q 004733 230 ITMYFNCGNVVDACKVFEEAKGYVCDHIS-YNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGY 308 (733)
Q Consensus 230 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 308 (733)
...+...|++++|++.++.....-+|... .......+.+.|+.++|..++..+.+. .|+...|...+..|.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~------ 82 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEAL------ 82 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH------
Confidence 34456788888998888886654465544 556667788889999999999988887 466666644443221
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcccHHHHHHHHHhcCChH-HHHHHHHHHHHCCC
Q 004733 309 QVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--KDIVSWNTMISTYAQRNLGR-SAILAYLEMQSVGI 385 (733)
Q Consensus 309 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~ 385 (733)
|+.. -....+.+....+++++.. |...+...+.-.+.....+. .+...+..+...|+
T Consensus 83 ---------g~~~-----------~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 83 ---------GLQL-----------QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred ---------hhhc-----------ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 0000 0011234455555555544 22222222221222212222 33445556666776
Q ss_pred CCChhhHHHHHHhhcchHHHHHHHHHHHHh----C----------Cccchh--HHHHHHHHHHhcCCHHHHHHHHhhcC-
Q 004733 386 RPDEFTFGSLLASSGFIEMVEMIHAFVFIN----G----------IITNIQ--VSNALISAYAKNERIKQAYQIFHNMS- 448 (733)
Q Consensus 386 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~- 448 (733)
++--.....+...-........+....... + -.|+.. ++..+...|...|++++|++.++...
T Consensus 143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 554444444333222222222222222211 0 112221 22334455555666666666666543
Q ss_pred -CC-ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHH-
Q 004733 449 -PR-NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLG- 525 (733)
Q Consensus 449 -~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 525 (733)
.| .+..|..-...+-..|++.+|.+.++...... .-|...-+-....+.+.|++++|.+++..+.+.+..|....+
T Consensus 223 htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 223 HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 22 23345555555566666666666666655543 334444444555555555555555555555554432221111
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHhc
Q 004733 526 -------NAMITLYAKCGDLDCSLRVFNMM 548 (733)
Q Consensus 526 -------~~l~~~~~~~~~~~~A~~~~~~~ 548 (733)
.....+|.+.|++..|++.|..+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22234455555555555544444
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.02 E-value=3.6e-07 Score=93.46 Aligned_cols=285 Identities=12% Similarity=0.070 Sum_probs=196.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CCh-hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhc------
Q 004733 428 ISAYAKNERIKQAYQIFHNMSP--RNI-ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCA------ 498 (733)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~------ 498 (733)
...+...|++++|++.+..-.. .|. .........+.+.|+.++|..++..+++.+ |+...|-..+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456788999999999987652 333 456667788999999999999999999986 77776666555554
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcCCCCh-hhHHHHHHHHHhcCChHHHHHHH
Q 004733 499 RISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLD-CSLRVFNMMIEKDT-ISWNALISAYAQHGEGKEAVSCF 576 (733)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~ 576 (733)
...+.+....+++.+...-...+. ...+.-.+.....+. .+..++..+..+++ .+|+.+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~--~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDA--PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccc--hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 123467777888877654422221 122222222222333 34445555555554 46677766676555555555666
Q ss_pred HHHHHc----CC---------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCC
Q 004733 577 KAMQDV----GR---------IKPDQ--ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGY 640 (733)
Q Consensus 577 ~~~~~~----~~---------~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 640 (733)
...... +. -+|.. .++..+...|...|++++|++++++.++. .|+ ++.|..-...|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCC
Confidence 655432 11 12333 35566777888999999999999999966 677 6688888999999999
Q ss_pred hHHHHHHHHhcC-C-CCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCC--CC-------chHHHHHHHHHHhcCChHH
Q 004733 641 LDEAERVINSQH-I-QARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQ--DK-------PSVYVLLSNIYAAAGLWEE 709 (733)
Q Consensus 641 ~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~~g~~~~ 709 (733)
+++|.+.++... . ..|...-...+..+.+.|++++|+..+......+- .. .....-.|.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999877 3 33444556677778899999999999998876552 11 1122355889999999999
Q ss_pred HHHHHHHHHh
Q 004733 710 AANIRELLKR 719 (733)
Q Consensus 710 A~~~~~~~~~ 719 (733)
|++.|....+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9988776543
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.2e-07 Score=88.50 Aligned_cols=241 Identities=11% Similarity=0.040 Sum_probs=144.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSP--RNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS 502 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 502 (733)
..+.++.-+..+++.|.+-+..... .++.-++....+|...|...+....-....+.|. -...-|+.+-.++
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~----- 301 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKAL----- 301 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHH-----
Confidence 3455666666666666666665442 2333345555566666666665555555444331 1111111111111
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004733 503 LRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDV 582 (733)
Q Consensus 503 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 582 (733)
..+..+|.+.++++.|...|.+...+... -....+....+++....+...-
T Consensus 302 -----------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~- 352 (539)
T KOG0548|consen 302 -----------------------ARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY- 352 (539)
T ss_pred -----------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh-
Confidence 12334566667788888887775532111 1112233445555555555444
Q ss_pred CCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhh
Q 004733 583 GRIKPDQAT-FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDN 659 (733)
Q Consensus 583 ~~~~p~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~ 659 (733)
+.|.... ...-...+.+.|++..|+..|.+++++ -+-|...|..-.-+|.+.|.+..|+.=.+... ..|+ ...
T Consensus 353 --~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 353 --INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred --hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 4455422 222355667888888888888888876 23346678888888888888888887666544 3343 334
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 704 (733)
|..=..++....+++.|...|+++++.+|++..+...+..++..+
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 555555666777889999999999999999888888888777653
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=8e-06 Score=85.48 Aligned_cols=174 Identities=14% Similarity=-0.022 Sum_probs=120.7
Q ss_pred hHHHHHHHHhcCCCCc---chhhHHHHHhhccCChhHHHHHhccCCC---CChhhHHHHHHHHhhcCChhHHHHHHHHHH
Q 004733 108 LVSVKRVFSEIQNPDV---YSWTTFLSACTKMGHVDYACEVFDKMPD---RDLPVYNAMITGCTENGYEDIGIGLFREMH 181 (733)
Q Consensus 108 ~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 181 (733)
...+...|=+..+.|+ ..|..|...|...-+...|.+-|++.-+ .+..++......|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4445555544444333 3677788888877788888888887654 455678888889999999999988843333
Q ss_pred HcCCCCC-hhhHHHHH-Hhh--ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCcc
Q 004733 182 KLDVRRD-NYSFASVL-SVC--DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHI 257 (733)
Q Consensus 182 ~~~~~~~-~~~~~~ll-~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 257 (733)
+. .|- ...++..- +.+ ..++...+..-|+...+.. +.|...|..+..+|.++|++..|.++|.+...+.|+..
T Consensus 554 qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 554 QK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 22 121 11222222 223 7788888888888877765 45778999999999999999999999999887767543
Q ss_pred chH-HHHHHHHhcCChHHHHHHHHHHHH
Q 004733 258 SYN-VMMDGLASVGRVEEALIRFRDMLV 284 (733)
Q Consensus 258 ~~~-~li~~~~~~g~~~~a~~~~~~m~~ 284 (733)
--. -.....+..|.+.+++..+.....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 211 122335678999999998887654
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=6.3e-06 Score=84.24 Aligned_cols=408 Identities=13% Similarity=0.124 Sum_probs=212.5
Q ss_pred CCcchhhHHHH--HhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcC---------CCCCh
Q 004733 121 PDVYSWTTFLS--ACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLD---------VRRDN 189 (733)
Q Consensus 121 ~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~~ 189 (733)
-|+.|...+++ .|+--|+.+.|.+.++.+.. ...|..|.+.|.+.++.+-|.-.+..|.... -.|+.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 56677777764 57788999999888776654 3568888888888888777777666663311 12332
Q ss_pred hhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhc
Q 004733 190 YSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASV 269 (733)
Q Consensus 190 ~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 269 (733)
......+-+...|.+++|+.++.+..+.+ .|=..|-..|.|++|.++-+.-.++.. ..||..-...+-..
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL-r~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL-RNTYYNYAKYLEAR 871 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh-hhhHHHHHHHHHhh
Confidence 22222222337899999999999887643 344557778999999998877554322 23566666777778
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004733 270 GRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARL 349 (733)
Q Consensus 270 g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 349 (733)
++.+.|++.|++.... -...+..+.. ++....+.... ..|...|.=-...+-..|+++.|+.++...
T Consensus 872 ~Di~~AleyyEK~~~h----afev~rmL~e---~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVH----AFEVFRMLKE---YPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred ccHHHHHHHHHhcCCh----HHHHHHHHHh---ChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 8999999988864221 1111111100 01111111110 011122222222223344444444444433
Q ss_pred ccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHH
Q 004733 350 QEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALIS 429 (733)
Q Consensus 350 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (733)
++ |-.+++..|-.|+.++|-++-++-. |....-.+.+
T Consensus 939 ~D-----~fs~VrI~C~qGk~~kAa~iA~esg--------------------------------------d~AAcYhlaR 975 (1416)
T KOG3617|consen 939 KD-----YFSMVRIKCIQGKTDKAARIAEESG--------------------------------------DKAACYHLAR 975 (1416)
T ss_pred hh-----hhhheeeEeeccCchHHHHHHHhcc--------------------------------------cHHHHHHHHH
Confidence 22 3334444444455554444433321 2223346777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh-------------CCC--chHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004733 430 AYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLL-------------NGF--PVQGLQHFSELLMSELRPDEYTLSVAL 494 (733)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-------------~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll 494 (733)
.|-..|++.+|..+|.+.. ++..-|+.|-. .|. .-.|..+|++ .|. -+...+
T Consensus 976 ~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AV 1042 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAV 1042 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHH
Confidence 8888888888888887654 22222322211 111 1122223322 121 122334
Q ss_pred HHhcccCChHHHHHH-HH-------HHHH--cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 004733 495 SSCARISSLRHGKQI-HG-------YVLK--NNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYA 564 (733)
Q Consensus 495 ~~~~~~~~~~~a~~~-~~-------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 564 (733)
..|.+.|.+.+|+++ |+ +++. .....|+...+.-.+.|+...++++|..++-... -|..-+..|.
T Consensus 1043 mLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar-----~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1043 MLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR-----EFSGALQLCK 1117 (1416)
T ss_pred HHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 456666776666653 11 1111 2334455566666666666666777666655432 1222222222
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHh
Q 004733 565 QHGEGKEAVSCFKAMQDVGRIKPDQA----TFTAVLSACSHAGLVDDGTRIFDSM 615 (733)
Q Consensus 565 ~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~A~~~~~~~ 615 (733)
..+..-..++-+.|--..+-.|+.. ....+...|.++|.+..|.+-|.+.
T Consensus 1118 -~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1118 -NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred -cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 2222223333333321110234433 3455666888888888877766655
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=4.9e-07 Score=87.57 Aligned_cols=225 Identities=11% Similarity=0.007 Sum_probs=147.5
Q ss_pred CchHHHHHHHHHHHCC-CCCC--HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004733 467 FPVQGLQHFSELLMSE-LRPD--EYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLR 543 (733)
Q Consensus 467 ~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 543 (733)
..+.++.-+.+++... ..|+ ...|...-..+...|+.++|...++...+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555565555432 1222 2334555556667777777777777766654 2356778889999999999999999
Q ss_pred HHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 004733 544 VFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYG 620 (733)
Q Consensus 544 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 620 (733)
.|+...+ | +...|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++....
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 9998864 4 3567788888899999999999999999984 466543222233345677899999999776543
Q ss_pred CCCCchHHHHHHHHhhhcCChHHH--HHHHHh-cCC----CC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc-
Q 004733 621 FIPAEDHLSCMLDLLGRAGYLDEA--ERVINS-QHI----QA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP- 691 (733)
Q Consensus 621 ~~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~- 691 (733)
..|+...+ .+. ....|+..++ .+.+.. ... .| ....|..+...+...|++++|+..++++.+.+|.+.
T Consensus 195 ~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33332222 222 2335554433 322222 111 12 234678888899999999999999999999997554
Q ss_pred hHHHHHHHH
Q 004733 692 SVYVLLSNI 700 (733)
Q Consensus 692 ~~~~~l~~~ 700 (733)
.....+...
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333444443
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.92 E-value=0.00011 Score=77.35 Aligned_cols=178 Identities=11% Similarity=0.084 Sum_probs=125.1
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHHhhccChHHHH
Q 004733 34 SGHYQDALHLFVQIHSSHKLKPDI-YSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYKNARDLVSVK 112 (733)
Q Consensus 34 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 112 (733)
+.+...|+..|-+-.+. .|+- ..|..|-..|+..-+...|.+.|.+.-+.... +..........|++..+++.|.
T Consensus 471 rK~~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhhHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHH
Confidence 33467777777655443 2332 45788888888877899999999987654322 4667778888999999999998
Q ss_pred HHHHhcCCCCc-----chhhHHHHHhhccCChhHHHHHhccCCC---CChhhHHHHHHHHhhcCChhHHHHHHHHHHHcC
Q 004733 113 RVFSEIQNPDV-----YSWTTFLSACTKMGHVDYACEVFDKMPD---RDLPVYNAMITGCTENGYEDIGIGLFREMHKLD 184 (733)
Q Consensus 113 ~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 184 (733)
.+.-..-+.++ ..|-..--.|.+.++...|+.-|+...+ .|...|..+..+|.+.|++..|+++|.+...
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-- 624 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL-- 624 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--
Confidence 88544333221 1222233345678888888888887654 3667899999999999999999999998877
Q ss_pred CCCChhh--HHHHHHhhccCchHHHHHHHHHHHHh
Q 004733 185 VRRDNYS--FASVLSVCDAGLLEFGRQLHSLVTKS 217 (733)
Q Consensus 185 ~~~~~~~--~~~ll~~~~~~~~~~a~~~~~~~~~~ 217 (733)
+.|+..- |-..+.-|..|.+.++...+..++..
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455432 22223334889999999988887653
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=2.1e-07 Score=93.81 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCCH
Q 004733 523 SLGNAMITLYAKCGDLDCSLRVFNMMIE----------KDTI-SWNALISAYAQHGEGKEAVSCFKAMQDVG--RIKPDQ 589 (733)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~p~~ 589 (733)
.+++.|..+|.+.|++++|...+++..+ +.+. .++.++..+...+++++|..++++..+.- .+.++.
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 3445666677777777777766665431 1222 35567777888999999999888775421 022333
Q ss_pred ----HHHHHHHHHHhccCCHHHHHHHHHHhHhhc-----CCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-------
Q 004733 590 ----ATFTAVLSACSHAGLVDDGTRIFDSMVNDY-----GFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH------- 652 (733)
Q Consensus 590 ----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------- 652 (733)
.+++.|...|...|++++|.++++++++.. +..+. ...++.+...|.+.+++.+|.++|.+..
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 468889999999999999999999988762 11222 3467888889999999998888887633
Q ss_pred -CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 653 -IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 653 -~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2333 23688999999999999999999998874
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=4.3e-08 Score=93.14 Aligned_cols=253 Identities=15% Similarity=0.080 Sum_probs=132.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcC-CC--ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChH
Q 004733 428 ISAYAKNERIKQAYQIFHNMS-PR--NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLR 504 (733)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 504 (733)
++-+.-.|++..++.-.+.-. .+ +......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 344566788888886555111 11 2234455667788888766543 4443333 666666655555555444444
Q ss_pred HHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004733 505 HGKQIHGYVLKNNLI-SKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVG 583 (733)
Q Consensus 505 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 583 (733)
.+..-++........ .+..+.......+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-- 159 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ-- 159 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 444433333222222 22222223334455667777777777664 3455555666777777777777777777766
Q ss_pred CCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-Ch
Q 004733 584 RIKPDQATFTAVLSAC----SHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RS 657 (733)
Q Consensus 584 ~~~p~~~~~~~ll~~~----~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~ 657 (733)
+..|.. ...+..++ .-.+.+.+|..+|+++.++ ..+++.+++.+..++...|++++|.+++.+.. ..| ++
T Consensus 160 -~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 160 -IDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp -CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred -cCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 334432 22333322 2223567777777776554 44555666666666666666666666665533 222 23
Q ss_pred hhHHHHHHHHHhhCCH-HHHHHHHHHHhccCCCCch
Q 004733 658 DNWWALFSACAAHGNL-RLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~ 692 (733)
.+.-.++.+....|+. +.+.+.+.++....|+++.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 3444444444455544 4455566665556665543
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=7.1e-06 Score=75.22 Aligned_cols=292 Identities=12% Similarity=0.122 Sum_probs=208.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHH-HHHHhccc
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSPRNIITWNTLI---NGFLLNGFPVQGLQHFSELLMSELRPDEYTLSV-ALSSCARI 500 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~ 500 (733)
-.+...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-+...++. +||-..-.. --..+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 34667778889999999999988877776666654 4678888888888888888775 577433221 12345678
Q ss_pred CChHHHHHHHHHHHHcCCCCc--h----------hHH--HHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHH
Q 004733 501 SSLRHGKQIHGYVLKNNLISK--M----------SLG--NAMITLYAKCGDLDCSLRVFNMMIE--K-DTISWNALISAY 563 (733)
Q Consensus 501 ~~~~~a~~~~~~~~~~~~~~~--~----------~~~--~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 563 (733)
|.++.|..-|+...++..... . ..+ ...+..+...|+...|+.....+.+ | |...|..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 899999988888877643211 1 111 1223345567888888888888764 2 566677778889
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch----HHHH---HH----
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED----HLSC---ML---- 632 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~~---l~---- 632 (733)
...|++..|+.-++...+.. .-+..++.-+-..+...|+.+.++...++.+ .+.|+-. .|.. +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999998888877643 2334455566667778899999888888887 4577733 2222 22
Q ss_pred --HHhhhcCChHHHHHHHHhcC-CCCChh-----hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc
Q 004733 633 --DLLGRAGYLDEAERVINSQH-IQARSD-----NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 633 --~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 704 (733)
....+.++|.++++--++.. ..|... .+..+..++...|++.+|++...++++.+|+|..++.--+.+|...
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 22355677888877766544 555522 3445566677889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCc
Q 004733 705 GLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 705 g~~~~A~~~~~~~~~~~~~ 723 (733)
..+++|+.-|++..+.+..
T Consensus 355 E~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHHhcCcc
Confidence 9999999999988876543
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=1.7e-07 Score=88.30 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH----H
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIE--KD-T---ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA----T 591 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~----~ 591 (733)
...+......+...|+++.|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+.. +
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---HPNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCCchHHH
Confidence 34445555566666666666666666542 21 1 23455556666666666666666666663 23321 2
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHH
Q 004733 592 FTAVLSACSHA--------GLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWA 662 (733)
Q Consensus 592 ~~~ll~~~~~~--------~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 662 (733)
+..+..++... |++++|.+.++.+... .|+.. ....+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333344332 5566666666666644 33321 11111110 0000000 001124
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKP---SVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
+...+...|++++|+..++.+.+..|+++ ..+..++.+|...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55668899999999999999999987654 689999999999999999999999988754
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.5e-06 Score=76.55 Aligned_cols=343 Identities=11% Similarity=0.028 Sum_probs=219.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHH
Q 004733 24 LNISLANLSRSGHYQDALHLFVQIHSSHKLKP-DIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLY 102 (733)
Q Consensus 24 ~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (733)
+.+.+..+.+..++.+|++++..-.+. .| +......|-.+|.+..++..|..+++++-..-.+. ...--.-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHH
Confidence 456667778889999999999876443 45 55567777777778999999999999875433222 22222334556
Q ss_pred hhccChHHHHHHHHhcCCC-CcchhhHHHHHh--hccCChhHHHHHhccCCC-CChhhHHHHHHHHhhcCChhHHHHHHH
Q 004733 103 KNARDLVSVKRVFSEIQNP-DVYSWTTFLSAC--TKMGHVDYACEVFDKMPD-RDLPVYNAMITGCTENGYEDIGIGLFR 178 (733)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 178 (733)
-+.+.+.+|.++...+... +...-..-+.+- -..+++..++.+++..+. .+..+.+...-.+.+.|+++.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6788999999999888763 322222222222 356889999999999884 555566666666789999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhc-----CC
Q 004733 179 EMHKLDVRRDNYSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKG-----YV 253 (733)
Q Consensus 179 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~ 253 (733)
...+-+--.....|+..+.-++.|+++.|+++..+++++|++..+..- -|...+... .+.+.. ..
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg---------IGm~tegiD-vrsvgNt~~lh~S 238 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG---------IGMTTEGID-VRSVGNTLVLHQS 238 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC---------ccceeccCc-hhcccchHHHHHH
Confidence 998765555667888888777999999999999999999875433210 011000000 000000 00
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHcc--CchhHHHHHHHHHHhCCCcchHHHHHHH
Q 004733 254 CDHISYNVMMDGLASVGRVEEALIRFRDMLVA-SLRPSELTFVSVMSACL--CPRVGYQVHAQAMKSGFEAYTSVSNAAI 330 (733)
Q Consensus 254 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~li 330 (733)
.=+..+|.-...+.+.|+++.|.+.+-+|.-+ .-..|.+|...+--.-. ++..+..-+..+... -+....++..++
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~-nPfP~ETFANlL 317 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ-NPFPPETFANLL 317 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc-CCCChHHHHHHH
Confidence 00123444455567788888888888887533 23456666554422211 455555555555555 235567888888
Q ss_pred HHHHhcCCHHHHHHHHHhccc-----CCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 331 TMYSSCGKIDEACMIFARLQE-----KDIVSWNTMISTYAQRNLGRSAILAYLEMQ 381 (733)
Q Consensus 331 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 381 (733)
-.||+..-++.|.+++.+-.. -+...|+.+=..-...-.++++++-++.+.
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 899999999999998876554 233444433332233455666666555543
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.8e-07 Score=88.94 Aligned_cols=225 Identities=11% Similarity=0.074 Sum_probs=146.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHhHHHHHHHhcccCCh
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRP-DEYTLSVALSSCARISSL 503 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~ 503 (733)
..+.+++...|+.+.++.-+..-.+|.......+...+...++-+.++.-+++....+..+ +..........+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3466778888888766655544445555555444443333344445555555544443332 233333334566778999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hhHHHHHH----HHHhcCChHHHHHHHHH
Q 004733 504 RHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDT-ISWNALIS----AYAQHGEGKEAVSCFKA 578 (733)
Q Consensus 504 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~----~~~~~~~~~~A~~~~~~ 578 (733)
++|.+++... .+.......+..+.+.++++.|.+.++.|.+-+. .+...+.. ...-.+.+.+|..+|++
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 9998877542 3556667788999999999999999999985322 22333333 33334579999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCCh-HHHHHHHHhcC-CCCC
Q 004733 579 MQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYL-DEAERVINSQH-IQAR 656 (733)
Q Consensus 579 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~~~ 656 (733)
+.+. ..+++.+.+.+..++...|++++|.+++++.... -+-+++++..++.+....|+. +.+.+++..+. ..|+
T Consensus 193 l~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 193 LSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 8764 4688889999999999999999999999998754 233466888888888888887 66778888877 5555
Q ss_pred hhh
Q 004733 657 SDN 659 (733)
Q Consensus 657 ~~~ 659 (733)
.+.
T Consensus 269 h~~ 271 (290)
T PF04733_consen 269 HPL 271 (290)
T ss_dssp SHH
T ss_pred ChH
Confidence 443
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.5e-07 Score=87.74 Aligned_cols=217 Identities=11% Similarity=0.044 Sum_probs=147.0
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---hHH-------HHH
Q 004733 491 SVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTI---SWN-------ALI 560 (733)
Q Consensus 491 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~-------~l~ 560 (733)
..+.++..+..++..+.+-+....+.. .+..-++....+|...|.+..+...-....+.+.. -|+ .+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344455555556666666655555544 34444555666666666666666555554432211 122 234
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhhcC
Q 004733 561 SAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGRAG 639 (733)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g 639 (733)
.+|.+.++++.|+..|++..... ..|+.. .+....+++....+... -+.|... -...=...+.+.|
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~-Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEH-RTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhh-cCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 46667788999999999887765 444422 22233444444444443 2344432 2222366778999
Q ss_pred ChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 640 YLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 640 ~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
++..|...+.++. ..| |...|.....+|.+.|.+..|+.-.+.+.+++|+....|..=+.++....+|++|.+.|++.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 445 45578888888999999999999999999999999999999999999999999999999988
Q ss_pred HhCCC
Q 004733 718 KRTGV 722 (733)
Q Consensus 718 ~~~~~ 722 (733)
++...
T Consensus 453 le~dp 457 (539)
T KOG0548|consen 453 LELDP 457 (539)
T ss_pred HhcCc
Confidence 77653
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=9.6e-06 Score=82.04 Aligned_cols=293 Identities=13% Similarity=0.029 Sum_probs=179.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC---CCChh---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH-hHHH---HH
Q 004733 425 NALISAYAKNERIKQAYQIFHNMS---PRNII---TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEY-TLSV---AL 494 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~---ll 494 (733)
..+...+...|+.+.+.+.+.... +.+.. ........+...|++++|.+.+++..+.. |+.. .+.. ..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~ 87 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHH
Confidence 444455666677776655554432 22222 12222345677899999999999988763 4433 3331 11
Q ss_pred HHhcccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChH
Q 004733 495 SSCARISSLRHGKQIHGYVLKNNLISK-MSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGK 570 (733)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 570 (733)
......+....+.+.+.. .....|+ ......+...+...|++++|.+.+++..+ .+...+..+...+...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 222234455555555444 1122232 33444566778899999999999998874 34567788888999999999
Q ss_pred HHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH-H--HHHHHhhhcCChHHHH
Q 004733 571 EAVSCFKAMQDVGRIKPDQ--ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHL-S--CMLDLLGRAGYLDEAE 645 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~ 645 (733)
+|...+++........|+. ..|..+...+...|++++|..++++........+..... . .++..+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 9999999988753111232 235567788999999999999999986431111121111 1 2233334444333222
Q ss_pred HH---HHhcC-CCCC-hhhH--HHHHHHHHhhCCHHHHHHHHHHHhccCCC---------CchHHHHHHHHHHhcCChHH
Q 004733 646 RV---INSQH-IQAR-SDNW--WALFSACAAHGNLRLGRIIAGLLLEREQD---------KPSVYVLLSNIYAAAGLWEE 709 (733)
Q Consensus 646 ~~---~~~~~-~~~~-~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~ 709 (733)
.. ..... ..|. ...+ .....++...|+.+.|...++.+....-. ........+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 22 22111 1111 1112 34566677899999999999887663321 34456677888999999999
Q ss_pred HHHHHHHHHhCC
Q 004733 710 AANIRELLKRTG 721 (733)
Q Consensus 710 A~~~~~~~~~~~ 721 (733)
|.+.+.+....+
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=2.9e-07 Score=82.50 Aligned_cols=120 Identities=8% Similarity=0.036 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHH-HhhCC--HHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSAC-AAHGN--LRLG 676 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~g~--~~~A 676 (733)
.++.+++...++...+. -+.+...|..+...|...|++++|...+++.. ..| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566666666666654 24456677777777777777777777777655 344 444566666653 56666 4788
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 677 RIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 677 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
..+++++.+.+|+++.++..++..+...|++++|+..++++.+....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888776543
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=2.8e-06 Score=76.17 Aligned_cols=285 Identities=13% Similarity=0.113 Sum_probs=198.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHH-HHHhc
Q 004733 423 VSNALISAYAKNERIKQAYQIFHNMSP---RNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVA-LSSCA 498 (733)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~ 498 (733)
-+++++.-+.+..++.+|++++..-.+ ++....+.+..+|-...++..|-..++++-.. .|...-|... ..++.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 346667777788888999888876653 34556777888888888899999988887664 4665555432 45566
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHH--HHHhcCCHHHHHHHHHhcC-CCChhhHHHHHHHHHhcCChHHHHHH
Q 004733 499 RISSLRHGKQIHGYVLKNNLISKMSLGNAMIT--LYAKCGDLDCSLRVFNMMI-EKDTISWNALISAYAQHGEGKEAVSC 575 (733)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 575 (733)
+.+.+..|..+...|... ++...-..-+. .....+++..+..+++..+ +.+..+.+.......+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 777788888887777643 11111111111 1234678888888888887 45666665555566789999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch---------------------HHHHHHH-
Q 004733 576 FKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED---------------------HLSCMLD- 633 (733)
Q Consensus 576 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~---------------------~~~~l~~- 633 (733)
|+...+-++..| ...|+..+..| +.|+++.|++...+++++ |+...++ ..+.++.
T Consensus 167 FqaAlqvsGyqp-llAYniALaHy-~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 167 FQAALQVSGYQP-LLAYNLALAHY-SSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHhhcCCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 999998773444 46676665544 668899999999999887 6533211 1123333
Q ss_pred ------HhhhcCChHHHHHHHHhcC----CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 004733 634 ------LLGRAGYLDEAERVINSQH----IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA 703 (733)
Q Consensus 634 ------~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 703 (733)
.+.+.|+++.|.+.+..|+ ...|+.+...+.-. -..+++....+-++-++++.|-.+.++..+..+|++
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3467899999999999988 44566665444322 234566666677777888899888999999999999
Q ss_pred cCChHHHHHHHHH
Q 004733 704 AGLWEEAANIREL 716 (733)
Q Consensus 704 ~g~~~~A~~~~~~ 716 (733)
..-++-|..++.+
T Consensus 323 Neyf~lAADvLAE 335 (459)
T KOG4340|consen 323 NEYFDLAADVLAE 335 (459)
T ss_pred hHHHhHHHHHHhh
Confidence 9999999988753
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.72 E-value=3.6e-07 Score=77.39 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 574 SCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 574 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
.++++.++ +.|+. +..+...+...|++++|...|+..... .| +...+..+..++.+.|++++|...+++..
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444 44443 233444455555555555555555532 22 33444555555555555555555555443
Q ss_pred -CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 653 -IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 653 -~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
..| ++..+..+..++...|++++|+..++.+++..|+++..+...+.+
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 222 333444444455555555555555555555555555555544443
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=4e-07 Score=77.09 Aligned_cols=109 Identities=11% Similarity=-0.066 Sum_probs=90.4
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 004733 609 TRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLER 686 (733)
Q Consensus 609 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 686 (733)
..++++.++. .|+ .+..+...+...|++++|...|+... ..| +...+..+..++...|++++|...++++.++
T Consensus 13 ~~~~~~al~~---~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV---DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc---CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455666533 454 45567888899999999999998866 444 5667888888899999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 687 EQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 687 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+|+++..+..++.++...|+.++|+..+++..+..+
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999887654
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=0.00012 Score=67.36 Aligned_cols=313 Identities=11% Similarity=0.095 Sum_probs=187.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcch
Q 004733 326 SNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMI---STYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFI 402 (733)
Q Consensus 326 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 402 (733)
.-.+-..+.-.|++..|+.-|....+-|+..|-++. ..|+..|+...|+.-+....+ ++||-..-.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR--------- 109 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR--------- 109 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH---------
Confidence 344556666778888888888888887777766654 357777887777777777766 456543211
Q ss_pred HHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 004733 403 EMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSE 482 (733)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 482 (733)
..-...+.+.|.++.|..=|+.+...++. .|...++.+-+....
T Consensus 110 ----------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~--- 153 (504)
T KOG0624|consen 110 ----------------------IQRGVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ--- 153 (504)
T ss_pred ----------------------HHhchhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH---
Confidence 11234567889999999888887532221 000001100000000
Q ss_pred CCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHH
Q 004733 483 LRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI---EKDTISWNAL 559 (733)
Q Consensus 483 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 559 (733)
........+..+...|+...++.....+.+-. +.+...|..-..+|...|++..|+.-+.... ..+...+--+
T Consensus 154 ---e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 154 ---EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred ---HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 00111222333344555555555555554432 3455566666677777777777766555443 3444455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHhHhhcCCCCC--
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQAT----FTAV---------LSACSHAGLVDDGTRIFDSMVNDYGFIPA-- 624 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~----~~~l---------l~~~~~~~~~~~A~~~~~~~~~~~~~~p~-- 624 (733)
-..+...|+.+.++...++-.+ +.||... |..+ +......++|.++++..+...+. .|.
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~ 303 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEET 303 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCccc
Confidence 5666667777777777777666 5566532 1111 11234556777777777777654 444
Q ss_pred ---chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHH
Q 004733 625 ---EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYV 695 (733)
Q Consensus 625 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 695 (733)
...+..+..++...|++-+|+....++. ..|+ ..++-.-..+|.....++.|+.-|+++.+.+|++..+-.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 2244556677778888888888877755 4555 556666777788888888888888888888888765533
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=5.4e-05 Score=87.25 Aligned_cols=262 Identities=14% Similarity=0.053 Sum_probs=151.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCH----HhHHHHHHHhcccCChHHHHHHHHHHHHc----CC-CCchhHHHHHHH
Q 004733 460 NGFLLNGFPVQGLQHFSELLMSELRPDE----YTLSVALSSCARISSLRHGKQIHGYVLKN----NL-ISKMSLGNAMIT 530 (733)
Q Consensus 460 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 530 (733)
..+...|++++|...+++....-...+. .....+...+...|++++|...++..... +. .........+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3445677777777777776553111111 12333444556677777777776665532 11 111223344556
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCC--HHHHHHHH
Q 004733 531 LYAKCGDLDCSLRVFNMMIE-------KD----TISWNALISAYAQHGEGKEAVSCFKAMQDVGR-IKPD--QATFTAVL 596 (733)
Q Consensus 531 ~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~p~--~~~~~~ll 596 (733)
.+...|+++.|...+++... ++ ...+..+...+...|++++|...+++...... ..+. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 67777888888877766532 11 11233444556667888888888887755310 1122 22344455
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCCchHH-----HHHHHHhhhcCChHHHHHHHHhcCCC--CChh----hHHHHHH
Q 004733 597 SACSHAGLVDDGTRIFDSMVNDYGFIPAEDHL-----SCMLDLLGRAGYLDEAERVINSQHIQ--ARSD----NWWALFS 665 (733)
Q Consensus 597 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~ 665 (733)
..+...|+++.|...+++.............+ ......+...|+.+.|...+...... .... .+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 56677888888888887775431111111111 11123345578888888887665411 1111 1234556
Q ss_pred HHHhhCCHHHHHHHHHHHhccC------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 666 ACAAHGNLRLGRIIAGLLLERE------QDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 666 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
++...|++++|...++++.+.. +....++..++.+|...|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6777888888888888877742 1223456677888888888888888888877644
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=6e-05 Score=76.24 Aligned_cols=267 Identities=14% Similarity=0.064 Sum_probs=168.6
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHHhHH-HHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHH--
Q 004733 452 IITWNTLINGFLLNGFPVQGLQHFSELLMSE-LRPDEYTLS-VALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNA-- 527 (733)
Q Consensus 452 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 527 (733)
...|..+...+...|+.+.+...+....... ..++..... .....+...|++++|..+++...+... .+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 3456667777777888888777777665543 123322222 223345677999999999998887642 23333331
Q ss_pred -HHHHHHhcCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 004733 528 -MITLYAKCGDLDCSLRVFNMMIEKDT---ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG 603 (733)
Q Consensus 528 -l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 603 (733)
........+..+.+.+.+......++ .....+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcC
Confidence 12222234566667776665332222 233455667889999999999999999954 334566778888999999
Q ss_pred CHHHHHHHHHHhHhhcCCCCCc--hHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHH------HHHHHHHhhCCHH
Q 004733 604 LVDDGTRIFDSMVNDYGFIPAE--DHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWW------ALFSACAAHGNLR 674 (733)
Q Consensus 604 ~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~------~l~~~~~~~g~~~ 674 (733)
++++|...+++........|+. ..+..+...+...|++++|..++++.. ..|....+. .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999998652222332 245578889999999999999999864 233112221 2233344555444
Q ss_pred HHHHH---HHHHhccCCCC--chHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 675 LGRII---AGLLLEREQDK--PSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 675 ~A~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
.+.+. ........|.. ...-.+.+.++...|+.++|...++.++...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33333 22221111221 2223367778889999999999999987744
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=1.3e-06 Score=85.87 Aligned_cols=194 Identities=12% Similarity=0.036 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH-----
Q 004733 523 SLGNAMITLYAKCGDLDCSLRVFNMMIEK---DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTA----- 594 (733)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~----- 594 (733)
..|..|...-...++-..|+..+.+..+- +....-.|.-.|...|.-..|+..+++.+... |...-...
T Consensus 320 eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~---p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 320 EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK---PKYVHLVSAGENE 396 (579)
T ss_pred HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC---ccchhccccCccc
Confidence 33444444455555555666666666543 34455566667777777788888888876633 21100000
Q ss_pred H---HHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHHHHHHHHHh
Q 004733 595 V---LSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWWALFSACAA 669 (733)
Q Consensus 595 l---l~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~ 669 (733)
. -..+.....+....++|-++....+..+|+++...|.-.|--.|.+++|.+-|+.+. .+|+.. .|+.|...+..
T Consensus 397 ~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 397 DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN 476 (579)
T ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence 0 011222223445555555555554667889999999999999999999999999866 666554 78888888888
Q ss_pred hCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 670 HGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 670 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
..+.++|+..|.+++++.|.-..+.+.|+-.|...|.++||.++|=..+.
T Consensus 477 ~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999998865544
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=4.2e-06 Score=90.54 Aligned_cols=198 Identities=10% Similarity=0.109 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIEK--------DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATF 592 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~ 592 (733)
+...|-..|.-....++.+.|.+++++.+.. -...|.++++.....|.-+...++|+++.+- .-....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3444555555666666777777776666421 2235666666666666666666777777662 2233456
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC---hhhHHHHHHHHH
Q 004733 593 TAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR---SDNWWALFSACA 668 (733)
Q Consensus 593 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~ 668 (733)
..|...|.+.+.+++|.++++.|.++++ ....+|..+++.+.+..+-+.|..++.+.. .-|. .......+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 6677777777777777777777777644 455667777777777777777777766543 2233 223344455555
Q ss_pred hhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 669 AHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
+.||-++++.+++..+...|.....|..++..-.+.|+.+.++.+|++....++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 6777777777777777777777777777777777777777777777777665553
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=9.8e-06 Score=72.11 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhh
Q 004733 557 NALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLG 636 (733)
Q Consensus 557 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 636 (733)
..+-..+...|+-+....+..+..... +.|.......+....+.|++..|...+.+.... -++|...++.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHH
Confidence 444555666677777666666654421 333444555666777777777777777777653 4556777777777777
Q ss_pred hcCChHHHHHHHHhcC-C-CCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 004733 637 RAGYLDEAERVINSQH-I-QARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 637 ~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (733)
+.|+.++|..-+.+.. . ..++...+.+...+.-.||++.|+.++..+....+.+..+-..|+.+....|++++|.++.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777666544 3 3344456777777777788888888888877777777777777777777888888777765
Q ss_pred H
Q 004733 715 E 715 (733)
Q Consensus 715 ~ 715 (733)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.57 E-value=7.4e-07 Score=73.58 Aligned_cols=97 Identities=18% Similarity=0.093 Sum_probs=84.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
.+..-.+...+...|++++|.++|+-+. ..|. ..-|..|..++...|++++|+..|.++..++|++|.++.+++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4455667777889999999999999766 4554 5567788888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 004733 703 AAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~ 721 (733)
..|+.++|++-|+......
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=4.8e-06 Score=74.05 Aligned_cols=135 Identities=17% Similarity=0.141 Sum_probs=113.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHH
Q 004733 586 KPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWAL 663 (733)
Q Consensus 586 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 663 (733)
.|+......+-..+...|+-+....+....... ..-+......++....+.|++.+|...+.+.. .++|...|..+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 454333355666777888888888888876532 34455677779999999999999999999877 66777889999
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 664 FSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 664 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.-+|.+.|+++.|...+.++.++.|.++.++..|+..|.-.|+++.|..++.+....+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998887654
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=3.9e-06 Score=85.01 Aligned_cols=214 Identities=7% Similarity=-0.043 Sum_probs=118.2
Q ss_pred HhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHHHHHh
Q 004733 488 YTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI--EKDTISWNALISAYAQ 565 (733)
Q Consensus 488 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~ 565 (733)
..-..+...+...|-...|..+++.+ ..+.-++.+|+..|+..+|..+..... +|++..|..+......
T Consensus 399 q~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 33344444555555556666655543 234455566666666666655544433 2445555555554444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHH
Q 004733 566 HGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAE 645 (733)
Q Consensus 566 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 645 (733)
.--+++|.++.+..... .-..+.......++++++.+.|+.-.+. .+....+|-.+.-+..+.++++.|.
T Consensus 470 ~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHH
Confidence 44445555554443221 1111111122345666666666655543 1223446666666666666776666
Q ss_pred HHHHhcC-CCCCh-hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 646 RVINSQH-IQARS-DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 646 ~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
+.|.... ..|+. ..|+.+..+|.+.|+-.+|...++++.+.+-++..+|.....+..+-|.+++|.+.+.++.+.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 6666544 44443 366677777777777777777777777766666666666666666677777777766666553
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=2e-05 Score=76.50 Aligned_cols=119 Identities=19% Similarity=0.138 Sum_probs=56.1
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHH
Q 004733 601 HAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRI 678 (733)
Q Consensus 601 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~ 678 (733)
..|++++|+..++.+.+. .+-|+.......+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 334445555555554433 11222233334444455555555555544433 3333 2233444444555555555555
Q ss_pred HHHHHhccCCCCchHHHHHHHHHH-----------------hcCChHHHHHHHHHHHhCC
Q 004733 679 IAGLLLEREQDKPSVYVLLSNIYA-----------------AAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 679 ~~~~~~~~~p~~~~~~~~l~~~~~-----------------~~g~~~~A~~~~~~~~~~~ 721 (733)
.++.....+|+++..|..|+.+|. -.|++++|+..+...+++.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 555555555555555555555544 4455555665555555544
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.9e-05 Score=69.57 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHh
Q 004733 557 NALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLL 635 (733)
Q Consensus 557 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (733)
..++-+....|+.+.|...++++... + |.+. .-..-.-.+...|++++|.++++.++++ . +-|..++..=+-+.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~--f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR--F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh--C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHH
Confidence 33444445566667777777776653 2 3332 2211122334456677777777777665 1 22334455555555
Q ss_pred hhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC---ChHHH
Q 004733 636 GRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG---LWEEA 710 (733)
Q Consensus 636 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 710 (733)
...|+.-+|++-+.... +..|...|..+...|...|+|++|.-.+++++-..|-++..+..|+.+++-.| +++-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56666666666555544 55666677777777777777777777777777777777777777776666554 45556
Q ss_pred HHHHHHHHhCCC
Q 004733 711 ANIRELLKRTGV 722 (733)
Q Consensus 711 ~~~~~~~~~~~~ 722 (733)
+++|++..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 666666655443
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=1.9e-06 Score=72.89 Aligned_cols=94 Identities=19% Similarity=0.158 Sum_probs=54.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC
Q 004733 628 LSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 705 (733)
...+...+...|++++|...++.+. .+.++..+..+...+...|+++.|...++.+.+.+|+++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 3344445555555555555555443 22233445555555666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHhCC
Q 004733 706 LWEEAANIRELLKRTG 721 (733)
Q Consensus 706 ~~~~A~~~~~~~~~~~ 721 (733)
++++|...+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 100 EPESALKALDLAIEIC 115 (135)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 6666666666665544
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=2.4e-05 Score=79.46 Aligned_cols=218 Identities=15% Similarity=0.132 Sum_probs=176.3
Q ss_pred CCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004733 416 GIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALS 495 (733)
Q Consensus 416 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 495 (733)
+++|-...-..+...+.+.|-...|..+|+++ ..|..++.+|+..|+..+|..+..+..++ +||+..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555556567888899999999999999986 47888899999999999999999988873 699999999999
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChHHH
Q 004733 496 SCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEK---DTISWNALISAYAQHGEGKEA 572 (733)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 572 (733)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 988888889999888765432 1122223334468999999999976643 345777777788899999999
Q ss_pred HHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhc
Q 004733 573 VSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQ 651 (733)
Q Consensus 573 ~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (733)
.+.|..-.. ..||.. .|+.+-.+|.+.++..+|...+++..+- . .-+...|...+....+-|.+++|++.+.++
T Consensus 539 v~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999988 678864 6999999999999999999999999876 4 444557777788889999999999998876
Q ss_pred C
Q 004733 652 H 652 (733)
Q Consensus 652 ~ 652 (733)
.
T Consensus 614 l 614 (777)
T KOG1128|consen 614 L 614 (777)
T ss_pred H
Confidence 5
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=1.7e-05 Score=71.15 Aligned_cols=154 Identities=7% Similarity=0.055 Sum_probs=117.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 004733 529 ITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDG 608 (733)
Q Consensus 529 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A 608 (733)
+..|...|+++.+....+.+..+. . .+...++.+++...+++..+.. +.|...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788888888766554433321 0 1223567788888898888854 45667788999999999999999
Q ss_pred HHHHHHhHhhcCCCC-CchHHHHHHHHh-hhcCC--hHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHH
Q 004733 609 TRIFDSMVNDYGFIP-AEDHLSCMLDLL-GRAGY--LDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGL 682 (733)
Q Consensus 609 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 682 (733)
...+++..+. .| +...+..+..++ ...|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999865 45 466778888864 67777 599999999877 555 455777788889999999999999999
Q ss_pred HhccCCCCchHHH
Q 004733 683 LLEREQDKPSVYV 695 (733)
Q Consensus 683 ~~~~~p~~~~~~~ 695 (733)
+++..|++..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999988765443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=9.3e-06 Score=76.42 Aligned_cols=184 Identities=11% Similarity=0.008 Sum_probs=125.2
Q ss_pred CCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh---h
Q 004733 484 RPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLI-S-KMSLGNAMITLYAKCGDLDCSLRVFNMMIE--KD-TI---S 555 (733)
Q Consensus 484 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~ 555 (733)
......+......+...|+++.|...++.+.+.... | ....+..+..++.+.|++++|...++.+.+ |+ .. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 344566777888889999999999999998875432 1 234667788899999999999999999864 32 22 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch
Q 004733 556 WNALISAYAQH--------GEGKEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED 626 (733)
Q Consensus 556 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~ 626 (733)
+..+..++... |++++|.+.|+++... .|+.. .+..+..... . .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~------~~-~~~~-------- 167 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----L------RN-RLAG-------- 167 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----H------HH-HHHH--------
Confidence 44555555544 7889999999999984 46643 2222211100 0 00 0000
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
....+...+.+.|++++|...+++.. ..|+ ...+..+..++...|++++|...++.+....|+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 11245667888888888888887755 2222 346778888888899999998888887776653
No 120
>PLN02789 farnesyltranstransferase
Probab=98.46 E-value=1.8e-05 Score=76.45 Aligned_cols=202 Identities=10% Similarity=0.058 Sum_probs=86.2
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCh--H
Q 004733 497 CARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCG-DLDCSLRVFNMMIEK---DTISWNALISAYAQHGEG--K 570 (733)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~ 570 (733)
+...+..++|....+.+++.+.. +..+|+.-..++...| ++++++..++++.+. +..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 33444555555555555543211 1122222222333334 345555555555422 223344333333333432 4
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhc---CCh----HH
Q 004733 571 EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRA---GYL----DE 643 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~ 643 (733)
+++.+++++.+.. +-|..+|.....++...|+++++++.++++++. . .-+...|+....++.+. |.. ++
T Consensus 126 ~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 126 KELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 4555555555532 223344555555555555555555555555544 1 11223333333333222 111 23
Q ss_pred HHHHHHh-cCCCCC-hhhHHHHHHHHHhh----CCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 004733 644 AERVINS-QHIQAR-SDNWWALFSACAAH----GNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA 703 (733)
Q Consensus 644 A~~~~~~-~~~~~~-~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 703 (733)
++++..+ +...|+ ...|.-+.+.+... +...+|...+.++.+..|.++.++..|+.+|..
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 3444322 223333 22344444444332 223345555555555555555555555555553
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.0036 Score=65.84 Aligned_cols=123 Identities=13% Similarity=0.181 Sum_probs=87.1
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHh--ccchhhhhhhHHHHHHHcccccCchhhHhHHHHHhhccCh
Q 004733 31 LSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACA--NLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYKNARDL 108 (733)
Q Consensus 31 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (733)
....++++.|++...++.+. .|+.. |..++.++. +.|+.++|..+++.....+.. |..+...+-.+|.+.+..
T Consensus 19 ~ld~~qfkkal~~~~kllkk---~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK---HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH---CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 35678899999999999776 34443 445556644 788999999888777655555 778888888888889999
Q ss_pred HHHHHHHHhcCC--CCcchhhHHHHHhhccCChhH----HHHHhccCCCCChhhHH
Q 004733 109 VSVKRVFSEIQN--PDVYSWTTFLSACTKMGHVDY----ACEVFDKMPDRDLPVYN 158 (733)
Q Consensus 109 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~ 158 (733)
+++..++++... |+......+..+|+|-+++.. |.+++...++.--.-|+
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 999999988765 665556666677777766553 55666655544333443
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00018 Score=64.14 Aligned_cols=251 Identities=14% Similarity=0.058 Sum_probs=141.1
Q ss_pred HHHhcCCHHHHHHHHhhcC-C-CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHH
Q 004733 430 AYAKNERIKQAYQIFHNMS-P-RNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGK 507 (733)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 507 (733)
-+.-.|++..++..-.... . .++..-.-+-++|...|.+..... ++.... .|....+..+.......++.+.-.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 3444566666666555443 2 333344444556666665443222 222221 344444444444444444444333
Q ss_pred H-HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004733 508 Q-IHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIK 586 (733)
Q Consensus 508 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 586 (733)
. +.+.+.......+......-...|+..|++++|++....... ......=+..+.+..+.+-|...+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---- 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQI---- 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 3 344444444443433333444567788888888888777332 222222234455667788888888888762
Q ss_pred CCHHHHHHHHHHHh----ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhH
Q 004733 587 PDQATFTAVLSACS----HAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNW 660 (733)
Q Consensus 587 p~~~~~~~ll~~~~----~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 660 (733)
-+..|.+.|..++. -.+.+.+|.-+|++|.++ ..|++.+.+-...++...|++++|..+++... ...++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 25566666666554 234577788888888754 67777777777777777788888877777655 33344455
Q ss_pred HHHHHHHHhhC-CHHHHHHHHHHHhccCCCCch
Q 004733 661 WALFSACAAHG-NLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 661 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~ 692 (733)
-.++-+-...| +.+--.+.+.++....|..+-
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 44444444444 444455666666666676654
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.0024 Score=63.16 Aligned_cols=176 Identities=11% Similarity=0.160 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHHCC-CCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 004733 468 PVQGLQHFSELLMSE-LRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLIS-KMSLGNAMITLYAKCGDLDCSLRVF 545 (733)
Q Consensus 468 ~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 545 (733)
.+.....++++...- +.|+ .+|...++...+..-+..|..+|.+..+.+..+ .+.+++++++-+|. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 455666677666543 3444 567788888889999999999999999988776 88899999998876 7889999999
Q ss_pred HhcCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 004733 546 NMMIE--KDT-ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ--ATFTAVLSACSHAGLVDDGTRIFDSMVNDYG 620 (733)
Q Consensus 546 ~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 620 (733)
+--.+ +|. .--...+.-+...|+-..+..+|++....+ +.|+. ..|..++..-+.-|+...+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~-l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV-LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc-CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 97663 343 334667777888899999999999999986 77775 5799999999999999999999998887644
Q ss_pred --CCCCchHHHHHHHHhhhcCChHHHHH
Q 004733 621 --FIPAEDHLSCMLDLLGRAGYLDEAER 646 (733)
Q Consensus 621 --~~p~~~~~~~l~~~~~~~g~~~~A~~ 646 (733)
..|....-..+++.|.-.+.+..-..
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHH
Confidence 44555566667777776666544333
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=3.6e-05 Score=82.34 Aligned_cols=136 Identities=10% Similarity=0.130 Sum_probs=85.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 004733 552 DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLS 629 (733)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~ 629 (733)
++..+..|.....+.|++++|..+++...+ +.||.. ....+...+.+.+++++|...+++.... .|+ .....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 355566666666677777777777777766 556643 3555566666777777777777777644 444 33555
Q ss_pred HHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 630 CMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
.+..++.+.|++++|..+|+++. ..|+ ...+..+..++...|+.++|...|+++.+...+....
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 66666677777777777777655 3333 4456666666667777777777777777666444443
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=8.6e-06 Score=80.12 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=101.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHH
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACA 668 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 668 (733)
....|+..+...++++.|..+++++.+. .|+ ....++..+...++..+|.+++.+.. ..| +...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666777788999999999999876 354 55568888888888899999988766 344 4445566667788
Q ss_pred hhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 669 AHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
..++++.|+.+++++.+..|++...|..|+.+|...|++++|+-.++-+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999887553
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=4.1e-07 Score=54.06 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004733 517 NLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI 549 (733)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 549 (733)
|+.||..+|+++|++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566677777777777777777777777777763
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=6.5e-05 Score=81.80 Aligned_cols=217 Identities=14% Similarity=0.177 Sum_probs=166.1
Q ss_pred HHhHHHHHHHhcccCChHHHHHHHHHHHHc-CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhhHHHHH
Q 004733 487 EYTLSVALSSCARISSLRHGKQIHGYVLKN-NLISK---MSLGNAMITLYAKCGDLDCSLRVFNMMIEK-D-TISWNALI 560 (733)
Q Consensus 487 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~l~ 560 (733)
...|-..|.-....++.++|.++.++.... +++-. ..+|.++++.-..-|.-+...++|+++.+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 455666777777788888888887777653 33322 346667777766777788888899988753 3 34688899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHhhh
Q 004733 561 SAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA---EDHLSCMLDLLGR 637 (733)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 637 (733)
..|.+.+.+++|.++++.|.+. +.-....|...+..+.++.+-+.|.++++++++. -|. .......+++-.+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhh
Confidence 9999999999999999999886 3556678999999999999999999999999865 333 4566777788889
Q ss_pred cCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccC--CCCchHHHHHHHHHHhc-CChH
Q 004733 638 AGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLERE--QDKPSVYVLLSNIYAAA-GLWE 708 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~-g~~~ 708 (733)
.|+.+.+..+|+... .+...+.|..++..-.++|+.+.++.+|+++..+. |.....++-.=.-|.+. |+-+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999998766 45567789999999999999999999999998865 66666555443345544 5544
No 128
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=0.00019 Score=69.44 Aligned_cols=208 Identities=10% Similarity=0.053 Sum_probs=137.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHh-HHHHHHHhcccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004733 455 WNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYT-LSVALSSCARIS-SLRHGKQIHGYVLKNNLISKMSLGNAMITLY 532 (733)
Q Consensus 455 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (733)
+..+-..+...++.++|+.+..+++... |+..| |..--..+...+ ++++++..++.+.+.+.+ +..+|+.-...+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 3344445566788899999999988753 55443 333333444555 578899988888876543 333455444445
Q ss_pred HhcCCH--HHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc---CC
Q 004733 533 AKCGDL--DCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHA---GL 604 (733)
Q Consensus 533 ~~~~~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~ 604 (733)
.+.|+. +++..+++++.+ .+..+|+...-++...|+++++++.++++++.+ ..|...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhcccccc
Confidence 555653 677888888764 456788888888889999999999999999965 34456666655555443 22
Q ss_pred H----HHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhc----CChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHh
Q 004733 605 V----DDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRA----GYLDEAERVINSQH-IQA-RSDNWWALFSACAA 669 (733)
Q Consensus 605 ~----~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 669 (733)
. ++..++..+++.. .+-+...|+.+..++... ++..+|.+++.... ..| .......++..|..
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 2 4677888777754 233466788887777763 44567888877754 333 34456667777664
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=4.4e-05 Score=74.22 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=82.2
Q ss_pred HHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHH
Q 004733 532 YAKCGDLDCSLRVFNMMI--EK-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDD 607 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 607 (733)
+...|++++|+..++.+. .| |+..+......+...|+.++|.+.++++.. ..|+. .....+..++.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH
Confidence 344566666666666654 23 333444455666666777777777777666 34553 334455556666677777
Q ss_pred HHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 608 GTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 608 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
|+.+++..... .+-++..|..|..+|...|+..+|.... ...+...|+++.|+..+..+.+..
T Consensus 393 ai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 393 AIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 77666666643 4445666666777777666665555443 234556667777777776666655
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=2.9e-05 Score=68.48 Aligned_cols=153 Identities=18% Similarity=0.105 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHc---CCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChH
Q 004733 567 GEGKEAVSCFKAMQDV---GRIKPDQAT-FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLD 642 (733)
Q Consensus 567 ~~~~~A~~~~~~~~~~---~~~~p~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 642 (733)
.++++.++++.++... |...|+..+ |..+.-+....|+.+.|...++.+..+ ++-+..+-..-.-.+...|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchh
Confidence 4677888877777542 114466654 666777888889999999999999987 3333334444455567889999
Q ss_pred HHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 643 EAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 643 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
+|+++++.+. ..| |..++..=+......|.-..|++.+...++.+|.|+.+|..|+.+|...|++++|.--++++.-.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999999877 334 45567777777788898889999999999999999999999999999999999999999998754
Q ss_pred C
Q 004733 721 G 721 (733)
Q Consensus 721 ~ 721 (733)
.
T Consensus 184 ~ 184 (289)
T KOG3060|consen 184 Q 184 (289)
T ss_pred C
Confidence 3
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=6.7e-07 Score=53.17 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=27.0
Q ss_pred CCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 004733 318 GFEAYTSVSNAAITMYSSCGKIDEACMIFARLQ 350 (733)
Q Consensus 318 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 350 (733)
|+.||..+|+.+|++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777888888899999999998888874
No 132
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.35 E-value=0.0018 Score=74.80 Aligned_cols=289 Identities=9% Similarity=-0.010 Sum_probs=182.3
Q ss_pred HHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCC------CCCHH--hHHHHHHHhc
Q 004733 431 YAKNERIKQAYQIFHNMS----PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSEL------RPDEY--TLSVALSSCA 498 (733)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~p~~~--~~~~ll~~~~ 498 (733)
....|+++.+...+..++ ..+..........+...|+++++...+......-- .+... .....-..+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445667777777776664 12222333444555677888888888887654311 11111 1122223455
Q ss_pred ccCChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhhHHHHHHHHHh
Q 004733 499 RISSLRHGKQIHGYVLKNNLISK----MSLGNAMITLYAKCGDLDCSLRVFNMMIE-------KD--TISWNALISAYAQ 565 (733)
Q Consensus 499 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~ 565 (733)
..|++++|...++.........+ ....+.+...+...|++++|...+.+... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999888765321112 12345566677789999999999888752 11 1234556677888
Q ss_pred cCChHHHHHHHHHHHHc----CCCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC-CCCC--chHHHHHHHHh
Q 004733 566 HGEGKEAVSCFKAMQDV----GRIK--P-DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYG-FIPA--EDHLSCMLDLL 635 (733)
Q Consensus 566 ~~~~~~A~~~~~~~~~~----~~~~--p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~p~--~~~~~~l~~~~ 635 (733)
.|++++|...+++.... + .. | ....+..+...+...|++++|...+++...... ..+. ...+..+...+
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQH-LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998887652 2 11 1 122344555567778999999999998765311 1121 23445567778
Q ss_pred hhcCChHHHHHHHHhcC----CCCChhhHH-----HHHHHHHhhCCHHHHHHHHHHHhccCCCCchH----HHHHHHHHH
Q 004733 636 GRAGYLDEAERVINSQH----IQARSDNWW-----ALFSACAAHGNLRLGRIIAGLLLEREQDKPSV----YVLLSNIYA 702 (733)
Q Consensus 636 ~~~g~~~~A~~~~~~~~----~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~ 702 (733)
...|++++|...++... .......+. ..+..+...|+.+.|...+.......+..... +..++.++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 89999999998887653 111111111 11233456889999999987766543333222 457888899
Q ss_pred hcCChHHHHHHHHHHHhC
Q 004733 703 AAGLWEEAANIRELLKRT 720 (733)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~ 720 (733)
..|++++|..++++....
T Consensus 703 ~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 703 LLGQFDEAEIILEELNEN 720 (903)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=1.7e-05 Score=67.03 Aligned_cols=118 Identities=12% Similarity=0.040 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-
Q 004733 575 CFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH- 652 (733)
Q Consensus 575 ~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 652 (733)
.++++.. ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+..++.+.|++++|...+++..
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 44544 44556667788889999999999988765 23356788888889999999999999888764
Q ss_pred -CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHH
Q 004733 653 -IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 653 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
.+.+...+..+...+...|++++|...++.+.+..|++.......
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 344456777788888999999999999999999999887754433
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.0004 Score=74.49 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHHHHHH
Q 004733 589 QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWWALFS 665 (733)
Q Consensus 589 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~ 665 (733)
...+..|.....+.|.+++|..+++...+. .|+.. ....++..+.+.+++++|+..+++.. ..|+.. ....+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 444444555555555555555555555432 44422 33444455555555555555554433 333322 2333444
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 666 ACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 666 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
++.+.|++++|..+|+++.+.+|+++.++..++.++...|+.++|...|++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555555544
No 135
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00011 Score=72.96 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=150.7
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHhHHHHHHHhcccCChHH
Q 004733 430 AYAKNERIKQAYQIFHNMSP---RNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPD-EYTLSVALSSCARISSLRH 505 (733)
Q Consensus 430 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 505 (733)
-+.+.|++.+|.-.|+.... .+...|.-|.......++-..|+..+++..+.. |+ ....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence 35677888888888877653 244577777777777787778888888777653 44 3334444445555555555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHH-HHcCC
Q 004733 506 GKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAM-QDVGR 584 (733)
Q Consensus 506 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~ 584 (733)
|...++...+..++--- +.. ..++...-+. ..+..........++|-++ ...+
T Consensus 372 Al~~L~~Wi~~~p~y~~-----l~~------------------a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~- 425 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVH-----LVS------------------AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP- 425 (579)
T ss_pred HHHHHHHHHHhCccchh-----ccc------------------cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC-
Confidence 55555544433211000 000 0000000000 0111112233344444444 3333
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHH
Q 004733 585 IKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWW 661 (733)
Q Consensus 585 ~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~ 661 (733)
..+|+.....|.-.|--.|.+++|...|+.++.. +|+ ..+|+.|...++...+.++|+..+++.. ..|... +..
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 4466777777777777778888888888888754 555 4477888888888888888888887765 666654 455
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCC-----C-----chHHHHHHHHHHhcCChHHHHH
Q 004733 662 ALFSACAAHGNLRLGRIIAGLLLEREQD-----K-----PSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 662 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
.+.-.|...|.+++|...+-.++.+.+. + ..+|..|=.++...++.|-+.+
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 6666788888888888888877775443 1 2467777666777777664443
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=4.2e-05 Score=65.22 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh----hHHHHHHHHHhhCCHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD----NWWALFSACAAHGNLRL 675 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~ 675 (733)
.++...+...++.+.+.++-.|- ....-.+...+...|++++|...|+.+. ..|++. ....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555544111100 1122223445555566666665555544 222321 22344555566666666
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 676 GRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 676 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
|+..++.. ...+-.+..+..+|.+|...|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666542 233444566777788888888888888877653
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00044 Score=61.80 Aligned_cols=175 Identities=10% Similarity=0.096 Sum_probs=124.9
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-
Q 004733 474 HFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD- 552 (733)
Q Consensus 474 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 552 (733)
+.+.+.......+......-...|++.+++++|.+...... +......=+..+.+..+++-|.+.++.|.+-|
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 34444444444454445555667788888888887766521 22233334556778889999999999998743
Q ss_pred hhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH
Q 004733 553 TISWNALISAYA----QHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHL 628 (733)
Q Consensus 553 ~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~ 628 (733)
-.+.+.|..++. -.+.+.+|.-+|++|.+. .+|+..+.+....++...|++++|..+++..+.+ -..+++++
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL 244 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETL 244 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHH
Confidence 446666666654 345789999999999875 4899999999999999999999999999999987 34457788
Q ss_pred HHHHHHhhhcCChHHHH-HHHHhcC-CCCChh
Q 004733 629 SCMLDLLGRAGYLDEAE-RVINSQH-IQARSD 658 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~-~~~~~~~-~~~~~~ 658 (733)
..++.+-...|...++. +.+..+. ..|..+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 88887777788766655 4455544 445443
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=2.3e-06 Score=64.89 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=60.0
Q ss_pred cCChHHHHHHHHhcC-CCC---ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHH
Q 004733 638 AGYLDEAERVINSQH-IQA---RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANI 713 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 713 (733)
.|+++.|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 467777777777665 233 344556678888888999999988888 777788888888889999999999999999
Q ss_pred HHH
Q 004733 714 REL 716 (733)
Q Consensus 714 ~~~ 716 (733)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.00048 Score=74.65 Aligned_cols=232 Identities=13% Similarity=0.031 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCC-hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHh
Q 004733 421 IQVSNALISAYAKNERIKQAYQIFHNMS--PRN-IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSC 497 (733)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 497 (733)
...+..|+..+...+++++|.++.+... .|+ ...|-.+...+.+.++...+..+ . ++...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhhc
Confidence 3444677777778888888888777543 232 23333333355555655544443 2 22222
Q ss_pred cccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHH
Q 004733 498 ARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVS 574 (733)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 574 (733)
....++.....+...+...+ .+...+..+..+|-+.|+.++|..+++++.+ .|+...|.+...|... +.++|.+
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 22222322222333333211 1222445566666666666666666666653 2445556666666666 6666666
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCC
Q 004733 575 CFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQ 654 (733)
Q Consensus 575 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (733)
++.+.... +...+++..+.++|.++... .+.+...+..+.......-...
T Consensus 171 m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~------------ 220 (906)
T PRK14720 171 YLKKAIYR----------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFT------------ 220 (906)
T ss_pred HHHHHHHH----------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccc------------
Confidence 66665541 33344556666666666543 1222223222222222111111
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 655 ARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 655 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
--...+.-+-..|...++++++..+++.+++.+|.+..+..-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 112334445566777888999999999999999999988888888777
No 140
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.15 E-value=7.5e-06 Score=58.45 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=54.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+...+...|++++|+..++.+++..|+++.++..++.++...|++++|..+|+++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999999999999999999999999999999999987543
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=3.1e-05 Score=63.75 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=60.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---chHHHHHH
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK---PSVYVLLS 698 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 698 (733)
++..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++.+....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445555566666666666665544 2222 2244456666677777777777777777766664 45567777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC
Q 004733 699 NIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.++...|+.++|..+++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777777777777777777776654
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.13 E-value=0.00046 Score=74.78 Aligned_cols=130 Identities=8% Similarity=0.083 Sum_probs=62.3
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCh
Q 004733 490 LSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEG 569 (733)
Q Consensus 490 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 569 (733)
+..+..+|.+.|..+++..+|+++.+.. +.++.+.|-+...|... ++++|.+++.+.. ..+...+++
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~ 185 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQY 185 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcc
Confidence 3334444444444444444444444433 33444455555555555 6666666555432 224444455
Q ss_pred HHHHHHHHHHHHcC------------------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 004733 570 KEAVSCFKAMQDVG------------------RIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSC 630 (733)
Q Consensus 570 ~~A~~~~~~~~~~~------------------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 630 (733)
.++.++|.++.... ...--..++..+-..|...++|+++..+++.+++. .|+ .....-
T Consensus 186 ~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~---~~~n~~a~~~ 262 (906)
T PRK14720 186 VGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH---DNKNNKAREE 262 (906)
T ss_pred hHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc---CCcchhhHHH
Confidence 55555555555522 01111223333444555666667777777766643 332 334444
Q ss_pred HHHHh
Q 004733 631 MLDLL 635 (733)
Q Consensus 631 l~~~~ 635 (733)
++.+|
T Consensus 263 l~~~y 267 (906)
T PRK14720 263 LIRFY 267 (906)
T ss_pred HHHHH
Confidence 44444
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=9.1e-05 Score=73.04 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC
Q 004733 525 GNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGL 604 (733)
Q Consensus 525 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 604 (733)
...++..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...|...++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 34566777778999999999999998777777788888888899999999999998753 3355556666677889999
Q ss_pred HHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 605 VDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 605 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
++.|+++.+++... .|+ ..+|..|+.+|.+.|+++.|+-.++.++
T Consensus 250 ~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999965 565 5599999999999999999999999887
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.12 E-value=9.1e-06 Score=58.90 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 004733 656 RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG-LWEEAANIRELLKRT 720 (733)
Q Consensus 656 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 720 (733)
++..|..+...+...|++++|+..++++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888889999999999999999999999999999999999999999 799999999988764
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.02 Score=60.56 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=100.0
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 004733 555 SWNALISAYAQHGEGK---EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCM 631 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 631 (733)
+-+.|+..+.+.++.. +|+-+++...... +.|..+-..++..|+-.|-...|.++|+.+--+ .|.-|.-.+- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-H
Confidence 3467888888888765 5666667666643 334455667888999999999999999998766 5555533332 3
Q ss_pred HHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC----CchHHHHHHHHHHhcC
Q 004733 632 LDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD----KPSVYVLLSNIYAAAG 705 (733)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 705 (733)
...+...|++..+...+.... ...+..--..++....+.|.+.+-.++..--..+.-. -..+-..........+
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455667788888887777543 1222222234455556777777655544332222211 1233445556677788
Q ss_pred ChHHHHHHHHHHH
Q 004733 706 LWEEAANIRELLK 718 (733)
Q Consensus 706 ~~~~A~~~~~~~~ 718 (733)
+.++=...++-|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8887777777665
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=3.8e-05 Score=60.34 Aligned_cols=94 Identities=22% Similarity=0.194 Sum_probs=76.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC
Q 004733 628 LSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 705 (733)
+..+...+...|++++|...++... ..|+ ...+..+...+...|++++|...++.+.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677777888888888887755 3333 3566777778888899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 004733 706 LWEEAANIRELLKRTG 721 (733)
Q Consensus 706 ~~~~A~~~~~~~~~~~ 721 (733)
++++|..++++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998877643
No 147
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.0049 Score=62.75 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=68.5
Q ss_pred ChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCC
Q 004733 107 DLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVR 186 (733)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 186 (733)
.+++|.+..+. .|.+..|..+...-...-.++-|+..|-+.. ++... ++.+++...
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~------------------dY~Gi-k~vkrl~~i--- 733 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCG------------------DYAGI-KLVKRLRTI--- 733 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc------------------cccch-hHHHHhhhh---
Confidence 45556666654 3777788777766666666666666553332 22211 111111000
Q ss_pred CChhhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCC---CccchHHHH
Q 004733 187 RDNYSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVC---DHISYNVMM 263 (733)
Q Consensus 187 ~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~li 263 (733)
.+...-..-+.+ --|++++|.+++-++-+++ ..|..+.+.|++-...++++.-.+-.- -...|+.+.
T Consensus 734 ~s~~~q~aei~~-~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig 803 (1189)
T KOG2041|consen 734 HSKEQQRAEISA-FYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIG 803 (1189)
T ss_pred hhHHHHhHhHhh-hhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHH
Confidence 000000000000 1245555555555444332 234556666777666666655322111 123566666
Q ss_pred HHHHhcCChHHHHHHHHH
Q 004733 264 DGLASVGRVEEALIRFRD 281 (733)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~ 281 (733)
..++....+++|.+.|..
T Consensus 804 ~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777777777777777654
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.00018 Score=61.23 Aligned_cols=124 Identities=16% Similarity=0.123 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch--HHH
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ----ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED--HLS 629 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~--~~~ 629 (733)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... ...|... ...
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 44445544 4788888888888888854 333 23334556778889999999999999876 3223222 334
Q ss_pred HHHHHhhhcCChHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHh
Q 004733 630 CMLDLLGRAGYLDEAERVINSQHIQA-RSDNWWALFSACAAHGNLRLGRIIAGLLL 684 (733)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 684 (733)
.+..++...|++++|+..++.....+ .+..+.....++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 56788889999999999998765322 33355666777889999999999988763
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00013 Score=66.96 Aligned_cols=108 Identities=15% Similarity=0.030 Sum_probs=88.7
Q ss_pred CCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhh-C--CHHHHHHHHHHHhccCCCCchHHHH
Q 004733 622 IPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAH-G--NLRLGRIIAGLLLEREQDKPSVYVL 696 (733)
Q Consensus 622 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~p~~~~~~~~ 696 (733)
+-|...|..|...|...|+...|..-|.+.. ..+++..+..+..++..+ | +..++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4567788888888988999888888887765 455566777777775433 2 4678999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCcCCCccc
Q 004733 697 LSNIYAAAGLWEEAANIRELLKRTGVIKQPGCS 729 (733)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 729 (733)
|+..+...|++.+|...|+.|.+.....+|.-+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999998776665543
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=3.5e-05 Score=76.49 Aligned_cols=107 Identities=7% Similarity=-0.010 Sum_probs=86.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhC
Q 004733 595 VLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHG 671 (733)
Q Consensus 595 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g 671 (733)
-...+...|++++|+..|+++++. .| +...+..+..+|.+.|++++|+..++++. ..| +...+..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 344566789999999999999875 44 45677888889999999999999998876 444 4557788888899999
Q ss_pred CHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc
Q 004733 672 NLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 672 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 704 (733)
+++.|+..++++++++|+++.+...+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998877776654443
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.1e-05 Score=48.95 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCCh
Q 004733 155 PVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDN 189 (733)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 189 (733)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999873
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.4e-05 Score=48.50 Aligned_cols=35 Identities=46% Similarity=0.846 Sum_probs=32.6
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 004733 257 ISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSE 291 (733)
Q Consensus 257 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 291 (733)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 153
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.026 Score=57.78 Aligned_cols=30 Identities=10% Similarity=-0.116 Sum_probs=18.3
Q ss_pred CCchHHHHHHHHHhHhcCChHHHHHHHHhh
Q 004733 220 SCLVSVVNALITMYFNCGNVVDACKVFEEA 249 (733)
Q Consensus 220 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 249 (733)
.|.+..|..|...-...-.++-|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 466666766666655555666666665543
No 154
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.93 E-value=0.021 Score=54.34 Aligned_cols=283 Identities=17% Similarity=0.160 Sum_probs=184.0
Q ss_pred HHHHHHHH--hcCCHHHHHHHHhhcC---CCChhhHHHHHHH--HHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHh
Q 004733 425 NALISAYA--KNERIKQAYQIFHNMS---PRNIITWNTLING--FLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSC 497 (733)
Q Consensus 425 ~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 497 (733)
.+|-.++. -.|+-..|.+.-.+.. ..|......++.+ -.-.|+++.|.+-|+.|.... .-.......+.-..
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleA 164 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEA 164 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHH
Confidence 34444443 3567777776665543 3444444444433 345789999999999998631 11223344555555
Q ss_pred cccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhh--HHHHHHHHH---hcC
Q 004733 498 ARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI-----EKDTIS--WNALISAYA---QHG 567 (733)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~--~~~l~~~~~---~~~ 567 (733)
.+.|+.+.|.++-+..-..-. .-.-...+.++..|..|+|+.|+++++.-. ++++.- -..|+.+-. -.-
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 677888888877666554321 123455778899999999999999998654 344321 122222211 123
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHH
Q 004733 568 EGKEAVSCFKAMQDVGRIKPDQAT-FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAER 646 (733)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 646 (733)
+...|...-.+..+ +.||-.. -..-..++.+.|+..++-.+++.+-+. .|.+.+...+ .+.+.|+. ++.
T Consensus 244 dp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~d 313 (531)
T COG3898 244 DPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALD 313 (531)
T ss_pred ChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHH
Confidence 56677777666666 7788654 334456889999999999999999865 6666665433 33455553 333
Q ss_pred HHHhc---C-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 004733 647 VINSQ---H-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA-GLWEEAANIRELLKRT 720 (733)
Q Consensus 647 ~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 720 (733)
-+++. . .+| +..+......+....|++..|..-.+.+....|.. ++|.+|+.+-... |+-.++...+-+..+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 22221 1 334 45577788888999999999999999999998864 5677888877665 9999999888776654
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.7e-05 Score=47.75 Aligned_cols=33 Identities=33% Similarity=0.661 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCC
Q 004733 155 PVYNAMITGCTENGYEDIGIGLFREMHKLDVRR 187 (733)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 187 (733)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988877
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.92 E-value=0.00036 Score=66.80 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 004733 554 ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSA-CSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCML 632 (733)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 632 (733)
.+|-.++....+.+..+.|..+|++.++.+ ..+...|...... |...++.+.|..+|+...+. +..+...+...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 367888888888889999999999998654 2233444443333 33356777899999999987 556677888999
Q ss_pred HHhhhcCChHHHHHHHHhcC-CCCCh----hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHH
Q 004733 633 DLLGRAGYLDEAERVINSQH-IQARS----DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYV 695 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 695 (733)
+.+.+.|+.+.|..+|++.. .-|.. ..|..++..-.+.|+.+....+.+++.+..|++.....
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999876 22322 47899999999999999999999999999888665433
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.91 E-value=0.00024 Score=59.31 Aligned_cols=90 Identities=13% Similarity=0.023 Sum_probs=77.1
Q ss_pred HHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCCh
Q 004733 630 CMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLW 707 (733)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 707 (733)
....-+...|++++|..+|+-+. ..-++.-|..|..++...|++++|+..|..+..++++||.+.++.+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34455668999999999998765 3445556777888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 004733 708 EEAANIRELLKR 719 (733)
Q Consensus 708 ~~A~~~~~~~~~ 719 (733)
++|+..|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987776
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=1.9e-05 Score=57.09 Aligned_cols=55 Identities=24% Similarity=0.371 Sum_probs=46.3
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
...|++++|+..++++.+.+|+++.++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678889999999999999999999999999999999999999999887776543
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.88 E-value=0.00025 Score=58.24 Aligned_cols=105 Identities=11% Similarity=0.103 Sum_probs=65.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHH
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALF 664 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 664 (733)
++..+...+...|++++|.+.++.+...+.-.| ....+..+..++.+.|++++|...++.+. ..|+ +..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666677777777776665411111 12344556666777777777777766554 2333 33566666
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCchHHH
Q 004733 665 SACAAHGNLRLGRIIAGLLLEREQDKPSVYV 695 (733)
Q Consensus 665 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 695 (733)
.++...|+.+.|...++++.+..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777788888888888888888888766543
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.4e-05 Score=47.03 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=31.2
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004733 257 ISYNVMMDGLASVGRVEEALIRFRDMLVASLRP 289 (733)
Q Consensus 257 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 289 (733)
.+|+.++.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=6.8e-05 Score=68.28 Aligned_cols=109 Identities=14% Similarity=-0.001 Sum_probs=89.6
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCH
Q 004733 597 SACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNL 673 (733)
Q Consensus 597 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~ 673 (733)
.-..+.+++.+|+..|.+.++. .|+ ...|..=..+|.+.|.++.|.+-.+... +.|. ...|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc---CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3567889999999999999954 665 4556677889999999999998887765 6665 44889999999999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChH
Q 004733 674 RLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWE 708 (733)
Q Consensus 674 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 708 (733)
++|++.|+++++++|++......|-++-.+.+.-.
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999988888877655555544
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00018 Score=65.58 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=84.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhc
Q 004733 561 SAYAQHGEGKEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRA 638 (733)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 638 (733)
.-+.+.+++.+|+..|.++++ +.|... -|..-..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 456788999999999999999 566654 566778899999999999999998884 4666 55899999999999
Q ss_pred CChHHHHHHHHhcC-CCCChhhHHHHHHHH
Q 004733 639 GYLDEAERVINSQH-IQARSDNWWALFSAC 667 (733)
Q Consensus 639 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 667 (733)
|++++|.+.|++.. +.|+..+|..-+...
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 99999999998866 889888876555443
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.83 E-value=6.8e-05 Score=55.02 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=53.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 664 FSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 664 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
...|...+++++|...++++++.+|+++..+...+.+|...|++++|.+.+++..+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999987765
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.0028 Score=53.32 Aligned_cols=151 Identities=12% Similarity=0.076 Sum_probs=108.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHH
Q 004733 565 QHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEA 644 (733)
Q Consensus 565 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 644 (733)
+.=|++...+-..+-.+ .-|....-..|..+..+.|+..+|...|++...- -+.-|...+-.+.++....++..+|
T Consensus 68 q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 68 QKLDPERHLREATEELA---IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHH
Confidence 33345544444333333 4566666667888888999999999999988764 3455666778888888889999999
Q ss_pred HHHHHhcC-CCCC---hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 645 ERVINSQH-IQAR---SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 645 ~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
...++++. .+|. +.....+.+.+...|....|+..++.+....|+ +..-...+.-+.++|+.++|..-+..+.+.
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 98888755 3333 345567778888999999999999999988886 444455566688899888887766655443
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.00032 Score=61.92 Aligned_cols=94 Identities=17% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 628 LSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
+..+...+...|++++|...+++.. ..|+ ...+..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444455555555555554433 1111 2355666777778888888888888888888888888888888888
Q ss_pred hcCC--------------hHHHHHHHHHHHhCC
Q 004733 703 AAGL--------------WEEAANIRELLKRTG 721 (733)
Q Consensus 703 ~~g~--------------~~~A~~~~~~~~~~~ 721 (733)
..|+ +++|.+++++..+.+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 7776 566777777766544
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00045 Score=68.75 Aligned_cols=100 Identities=8% Similarity=0.007 Sum_probs=76.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhc
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRA 638 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 638 (733)
...+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..++++++. .| +...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 455667889999999999998854 334566777788888999999999999999865 44 455788888899999
Q ss_pred CChHHHHHHHHhcC-CCCChhhHHHHH
Q 004733 639 GYLDEAERVINSQH-IQARSDNWWALF 664 (733)
Q Consensus 639 g~~~~A~~~~~~~~-~~~~~~~~~~l~ 664 (733)
|++++|+..|++.. ..|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999998766 666655544443
No 167
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.76 E-value=0.057 Score=53.90 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 004733 538 LDCSLRVFNMMIE----KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKP-DQATFTAVLSACSHAGLVDDGTRIF 612 (733)
Q Consensus 538 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~ 612 (733)
.+.....++++.. .-..+|-.+++.-.+..-+..|..+|.++.+.+ ..+ +...+++++..|+. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 4444555555542 123467888888888888999999999999988 555 56678888887765 6789999999
Q ss_pred HHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCC---CCC--hhhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 613 DSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHI---QAR--SDNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 613 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
+-=.+++| -++..-...++-+...++-..|..+|++... .|+ ...|..++..-..-||...+..+-++.....
T Consensus 425 eLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 425 ELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 99887744 3344556788889999999999999998762 333 3589999999999999999999999988877
Q ss_pred CCCc----hHHHHHHHHHHhcCChHHHHHHHH
Q 004733 688 QDKP----SVYVLLSNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 688 p~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 715 (733)
|.+. ..-.++..-|.-+|.+..-..-++
T Consensus 503 ~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 503 PADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred chhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 7321 123344445656666554444333
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.72 E-value=0.014 Score=59.02 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHh---------ccc--CCcccHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCC
Q 004733 322 YTSVSNAAITMYSSCGKIDEACMIFAR---------LQE--KDIVSWNTMISTYAQRNLG--RSAILAYLEMQSVGIRPD 388 (733)
Q Consensus 322 ~~~~~~~li~~~~~~g~~~~a~~~~~~---------~~~--~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~ 388 (733)
-+..+.+-+..|...|.+++|..+--- +.. .+...++..=.+|.+..+. -+.+.-++++++.|-.|+
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 334455556677788888877653111 100 1233344444555554443 334445566666776676
Q ss_pred hhhH
Q 004733 389 EFTF 392 (733)
Q Consensus 389 ~~~~ 392 (733)
....
T Consensus 635 ~iLl 638 (1081)
T KOG1538|consen 635 DLLL 638 (1081)
T ss_pred HHHH
Confidence 6443
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.00039 Score=61.13 Aligned_cols=91 Identities=14% Similarity=-0.072 Sum_probs=67.6
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
...+..++..+...|++++|...+++.. ..|+ ..++..+...+...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3455666666777777888777777653 2222 2357777788889999999999999999999999888888888
Q ss_pred HHH-------hcCChHHHHHHHH
Q 004733 700 IYA-------AAGLWEEAANIRE 715 (733)
Q Consensus 700 ~~~-------~~g~~~~A~~~~~ 715 (733)
+|. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 888 7788775544444
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.66 E-value=0.0014 Score=68.14 Aligned_cols=63 Identities=17% Similarity=0.055 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.+..+.-.....|++++|...++++.+++| +...|..++.++...|+.++|.+.+++....++
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344343334445555556666666655555 344555555555556666666655555554443
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.009 Score=55.67 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=47.7
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKP---SVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
....|.+.|.+..|..-++.+++..|+.+ .++..++.+|.+.|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44558889999999999999999888765 457788899999999999999887654
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.64 E-value=0.00011 Score=53.00 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=39.5
Q ss_pred hhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 636 GRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 636 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
.+.|++++|+++|+++. .+.+...+..+..+|.+.|++++|...++++...+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 34566666666666654 23344555666666777777777777777777777776666655543
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.00017 Score=51.36 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=47.7
Q ss_pred HHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 631 MLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
+...+.+.|++++|.+.|+++. ..| +...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567778888888888888766 445 445777888888899999999999999999999875
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.60 E-value=0.0006 Score=63.83 Aligned_cols=63 Identities=8% Similarity=-0.036 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLEREQDK---PSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
.+..+..+|...|+++.|...++.+.+..|++ +.++..++.+|...|+.++|.++|+++.+..
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33444555555566666666666666555553 3334445555666666666666666655544
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.00066 Score=52.99 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=39.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh
Q 004733 558 ALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR 637 (733)
Q Consensus 558 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (733)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++..... .+.+...+..+..++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 34444555555555555555555432 122233444444455555555555555554432 11122233334444444
Q ss_pred cCChHHHHHHHH
Q 004733 638 AGYLDEAERVIN 649 (733)
Q Consensus 638 ~g~~~~A~~~~~ 649 (733)
.|++++|...+.
T Consensus 81 ~~~~~~a~~~~~ 92 (100)
T cd00189 81 LGKYEEALEAYE 92 (100)
T ss_pred HHhHHHHHHHHH
Confidence 444444444433
No 176
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.59 E-value=0.086 Score=51.51 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=38.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLS 629 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 629 (733)
...|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|++++..+ +|+..+++
T Consensus 473 ysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~d 529 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRD 529 (549)
T ss_pred HhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHH
Confidence 356777777766666655 6677777777777777777777777777644 55655554
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0023 Score=66.59 Aligned_cols=140 Identities=13% Similarity=0.007 Sum_probs=99.5
Q ss_pred CCChhhHHHHHHHHHh--c---CChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHh
Q 004733 550 EKDTISWNALISAYAQ--H---GEGKEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHA--------GLVDDGTRIFDSM 615 (733)
Q Consensus 550 ~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~A~~~~~~~ 615 (733)
..+...|...+++... . ++.+.|..+|++..+ ..|+.. .|..+..++... +++..+.+..++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4566778777776543 2 237789999999999 568753 344443333221 1233444444444
Q ss_pred HhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch
Q 004733 616 VNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
........++..+..+.-.+...|++++|...+++.. ..|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3321123345677777777777899999999999877 7788778888899999999999999999999999999986
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0025 Score=60.83 Aligned_cols=156 Identities=14% Similarity=0.022 Sum_probs=107.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHH--------
Q 004733 561 SAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS--ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSC-------- 630 (733)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~-------- 630 (733)
.++.-.|++++|...--...+.. +. ..+...++ ++-..++.+.|...|++.+. ..|+......
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKL 249 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHH
Confidence 44567788888887777766633 22 22333343 33456778888888888774 3555332211
Q ss_pred -----HHHHhhhcCChHHHHHHHHhcC-CCCC-----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 631 -----MLDLLGRAGYLDEAERVINSQH-IQAR-----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 631 -----l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
=..-..+.|++.+|.+.+.... +.|+ ...|........+.|+.++|+.-.+.+++++|.-...+..-++
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 1233557888888888887655 4444 3344555555668889999999999999999888888888889
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCc
Q 004733 700 IYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
+|...++|++|.+.+++..+....
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999998887765443
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00011 Score=42.94 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHcCC
Q 004733 155 PVYNAMITGCTENGYEDIGIGLFREMHKLDV 185 (733)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 185 (733)
++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 180
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00013 Score=42.60 Aligned_cols=31 Identities=32% Similarity=0.636 Sum_probs=27.1
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 004733 257 ISYNVMMDGLASVGRVEEALIRFRDMLVASL 287 (733)
Q Consensus 257 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 287 (733)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 181
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.52 E-value=0.11 Score=50.85 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=49.5
Q ss_pred hHHHHHHH--HHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 659 NWWALFSA--CAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 659 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
.-+.+..+ +..+|++.++.-...-+.+..| ++.+|..+|.++....+++||.+++.++
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455554 5689999999999999999999 8999999999999999999999999854
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0046 Score=54.34 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 004733 554 ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD--QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSC 630 (733)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 630 (733)
..|..+...+...|++++|+..|++..... ..|. ..++..+...+...|++++|...+++.... .|+ ...+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 355666777777888888888888887643 1221 236777777888888888888888888754 333 344555
Q ss_pred HHHHhh-------hcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 631 MLDLLG-------RAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 631 l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
+...+. +.|++++|... +++|...++++...+|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCcccH
Confidence 555555 33333333333 3356677777777777653
No 183
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0032 Score=55.52 Aligned_cols=129 Identities=11% Similarity=0.088 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 004733 553 TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD--QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLS 629 (733)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~ 629 (733)
...+..+...+...|++++|...|++..+.. ..+. ...+..+...+.+.|++++|...+++..+. .|+ ...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 3456677777888888888888888888744 2222 245777777888888888888888888764 343 44566
Q ss_pred HHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCC
Q 004733 630 CMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGL 706 (733)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 706 (733)
.+..++...|+...+..-++.. .+.+++|...++++...+|++ +..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777765555433321 123677888999999999887 4444444444443
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.00031 Score=53.16 Aligned_cols=81 Identities=14% Similarity=0.295 Sum_probs=39.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHH
Q 004733 566 HGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEA 644 (733)
Q Consensus 566 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 644 (733)
.|+++.|+.+++++.+.....|+...+..+..+|.+.|++++|..+++. .+ ..|+ ......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3556666666666665330001223333455566666666666666665 21 1222 23333445556666666666
Q ss_pred HHHHHh
Q 004733 645 ERVINS 650 (733)
Q Consensus 645 ~~~~~~ 650 (733)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 185
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.50 E-value=8.7e-05 Score=44.05 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=30.8
Q ss_pred HHHHhccCCCCchHHHHHHHHHHhcCChHHHHH
Q 004733 680 AGLLLEREQDKPSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 680 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 186
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.13 Score=49.99 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC
Q 004733 423 VSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS 502 (733)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 502 (733)
+.+..+.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-.++... +-++..|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344556667778888888888887777777888888888888888776654332 1234667777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 004733 503 LRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVF 545 (733)
Q Consensus 503 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 545 (733)
..+|..+...+ .+..-+..|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 66666665541 1134556666666666665553
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.0019 Score=51.91 Aligned_cols=86 Identities=16% Similarity=-0.012 Sum_probs=52.3
Q ss_pred HHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC---CchHHHHHHHHHHh
Q 004733 632 LDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQD---KPSVYVLLSNIYAA 703 (733)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 703 (733)
..++-..|+.++|+.++++.. ...+ ...+..+...+...|++++|+.++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344455555556655555433 1111 223445556677777777777777777777676 55666666777777
Q ss_pred cCChHHHHHHHHHH
Q 004733 704 AGLWEEAANIRELL 717 (733)
Q Consensus 704 ~g~~~~A~~~~~~~ 717 (733)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 77777777766443
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.37 E-value=0.0049 Score=51.97 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=89.7
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC---CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CchHH
Q 004733 620 GFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH---IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD--KPSVY 694 (733)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~ 694 (733)
.+.|+...-..|..++.+.|+..||...+++.. ...|+.....+.++....+++..|...++++.+..|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 567888888889999999999999999999866 5667778888999999999999999999999998875 56678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 695 VLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
..++.+|...|+.++|..-|+...+-.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 889999999999999999999887654
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0029 Score=48.64 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=64.1
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHhh--ccC-------chHHHHHHHHHHHHhCCCCchHH
Q 004733 156 VYNAMITGCTENGYEDIGIGLFREMHKLDV-RRDNYSFASVLSVC--DAG-------LLEFGRQLHSLVTKSGFSCLVSV 225 (733)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~--~~~-------~~~~a~~~~~~~~~~~~~~~~~~ 225 (733)
+.-..|..+...+++.....+|+.++++|+ .|+..+|+.++.+. +.- .+...+.++++|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777778999999999999999999 99999999999765 221 33456778888888888888888
Q ss_pred HHHHHHHhHh
Q 004733 226 VNALITMYFN 235 (733)
Q Consensus 226 ~~~li~~~~~ 235 (733)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.003 Score=60.54 Aligned_cols=129 Identities=6% Similarity=0.057 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh-cCChHHHHHHHHhcC--CCCChhhHHHHHHH
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR-AGYLDEAERVINSQH--IQARSDNWWALFSA 666 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 666 (733)
.+|..++...-+.+..+.|..+|+++++. -..+.++|.....+-.. .++.+.|.++|+... ...+...|..++..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888888899999999999854 23345667666666444 566667999999866 66777889999999
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 667 CAAHGNLRLGRIIAGLLLEREQDKP---SVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 667 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
+...|+.+.|+.++++++..-|.+. .+|...+..=.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877766 57888888888899999999999888764
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0034 Score=62.44 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHh--CCCCchHHHHHHHHHhHhcCChHHHHHHHHhh--hcCCCCccc
Q 004733 184 DVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKS--GFSCLVSVVNALITMYFNCGNVVDACKVFEEA--KGYVCDHIS 258 (733)
Q Consensus 184 ~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~~~~~~~ 258 (733)
+.+.+...+..++..+ ...+++.+..++-..... ....-+.+...+|+.|.+.|..+.++.+++.- -|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445666777777777 777788888887777665 22233455678999999999999999999873 378899999
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHc
Q 004733 259 YNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSAC 301 (733)
Q Consensus 259 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 301 (733)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 9999999999999999999999998888888888876665544
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.028 Score=54.18 Aligned_cols=113 Identities=11% Similarity=0.215 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCC--CCCC--HHHHHHHHHHHhcc
Q 004733 528 MITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQH-GEGKEAVSCFKAMQDVGR--IKPD--QATFTAVLSACSHA 602 (733)
Q Consensus 528 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~--~~p~--~~~~~~ll~~~~~~ 602 (733)
.+..|...|++..|-+.+.. +...|... |++++|++.|++..+.-. -.+. ..++..+...+.+.
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 34455555665555544433 34455555 677777777766654210 0111 12344555566667
Q ss_pred CCHHHHHHHHHHhHhhcCCCCC-----c-hHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 603 GLVDDGTRIFDSMVNDYGFIPA-----E-DHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 603 ~~~~~A~~~~~~~~~~~~~~p~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
|++++|.++|+++... ....+ . ..+-..+-++...|+...|.+.+++..
T Consensus 169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777766544 11111 1 112223334455566666666666543
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.27 E-value=0.00059 Score=43.68 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
..+..+..+|...|++++|+..++++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457788899999999999999999999999999999988874
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.23 E-value=0.00088 Score=48.36 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=47.4
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhC-CHHHHHHHHHHHhccCC
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHG-NLRLGRIIAGLLLEREQ 688 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 688 (733)
...|..+...+...|++++|+..|++.. ..| ++..+..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566677777777888888887777655 334 4556777777788888 68888888888888877
No 195
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.23 E-value=0.09 Score=51.43 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004733 527 AMITLYAKCGDLDCSLRVFNMMIEK-------DTISWNALISAYAQ---HGEGKEAVSCFKAMQDVGRIKPDQATFTAVL 596 (733)
Q Consensus 527 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll 596 (733)
.++-+|-...+++...++++.+... ....--...-++.+ .|+.++|++++..+.... -.+++.+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Confidence 3444566777778888887777642 11111233445555 788899999988855554 567778887777
Q ss_pred HHHh----c-----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCCh-H---HHHHHH---HhcC-----CCC
Q 004733 597 SACS----H-----AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYL-D---EAERVI---NSQH-----IQA 655 (733)
Q Consensus 597 ~~~~----~-----~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~---~A~~~~---~~~~-----~~~ 655 (733)
+.|- . ....++|+..|.+.- .+.|+..+=-.++..+.-.|.. + +..++- ..+. ..+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 6552 1 224667777777665 4456654333333344444432 1 222222 1111 223
Q ss_pred Chh--hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 656 RSD--NWWALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 656 ~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
... .+.+++.++.-.||.++|.+.++++.+..|+.-
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 333 346888999999999999999999999987654
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.22 E-value=0.0017 Score=63.82 Aligned_cols=61 Identities=15% Similarity=-0.039 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV---YVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.+..+..+|...|++++|+..++++++++|+++.. |+.++.+|..+|+.++|+..+++..+
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444445555555555555555555555554432 55555555555555555555554444
No 197
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.20 E-value=0.015 Score=48.62 Aligned_cols=91 Identities=8% Similarity=-0.036 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQAT-FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
.-.+...+...|++++|..+|+-+.. +.|.... |..|..+|-..|++++|+..|...... . +-++..+-.+..+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag~c 112 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHHHH
Confidence 33444455566777777777777666 4454433 445555566667777777777766644 2 2335566666666
Q ss_pred hhhcCChHHHHHHHHhc
Q 004733 635 LGRAGYLDEAERVINSQ 651 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~ 651 (733)
+...|+.+.|++-|+..
T Consensus 113 ~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 113 YLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66777777766666653
No 198
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.20 E-value=0.0042 Score=47.76 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=48.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHhhcc-----------hHHHHHHHHHHHHhCCccchhHHHHHH
Q 004733 361 ISTYAQRNLGRSAILAYLEMQSVGI-RPDEFTFGSLLASSGF-----------IEMVEMIHAFVFINGIITNIQVSNALI 428 (733)
Q Consensus 361 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (733)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+... +.....+++.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444455777777777777777777 7777777777765444 344556666677777777777777777
Q ss_pred HHHHh
Q 004733 429 SAYAK 433 (733)
Q Consensus 429 ~~~~~ 433 (733)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 76654
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.17 E-value=0.014 Score=46.97 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=65.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---ch-HHHHHH
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ--ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA---ED-HLSCML 632 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---~~-~~~~l~ 632 (733)
...++-..|+.++|+.+|++....| ..... ..+..+...+...|++++|..++++.... .|+ .. ....+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHH
Confidence 4456778899999999999999887 54442 35667777888999999999999988876 243 22 233345
Q ss_pred HHhhhcCChHHHHHHHHh
Q 004733 633 DLLGRAGYLDEAERVINS 650 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~ 650 (733)
.++...|+.++|++.+-.
T Consensus 83 l~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 677888999999887654
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.17 E-value=0.004 Score=54.51 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=70.6
Q ss_pred HHHhccC--CCCChhhHHHHHHHHhh-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-cc-------------
Q 004733 143 CEVFDKM--PDRDLPVYNAMITGCTE-----NGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DA------------- 201 (733)
Q Consensus 143 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~------------- 201 (733)
...|+.. ...+..+|..++..+.+ .|+.+-....+..|.+.|+.-|..+|+.+|..+ +.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 45677788888887764 577788888899999999999999999999877 32
Q ss_pred ---CchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCC
Q 004733 202 ---GLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGN 238 (733)
Q Consensus 202 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 238 (733)
.+.+-|.+++++|...|+-||..++..|+..+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345577777777777777777777777777666554
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.17 E-value=0.0046 Score=61.58 Aligned_cols=118 Identities=8% Similarity=0.104 Sum_probs=95.3
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHhhcC-CC-----ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHH
Q 004733 418 ITNIQVSNALISAYAKNERIKQAYQIFHNMS-PR-----NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLS 491 (733)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 491 (733)
+.+......+++.+....+++.+..++.... .| -..|..++++.|...|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3344445677777777788888888887775 22 23467799999999999999999999999999999999999
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 004733 492 VALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKC 535 (733)
Q Consensus 492 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (733)
.+|+.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999988888777777777776666666655
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.17 E-value=0.0062 Score=57.15 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=61.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc----hHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHH
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAE----DHLSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWA 662 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~ 662 (733)
|...+....+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+. ..|+ +..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 444444444556666666666666655 2332 345556666666777777776666654 2222 334455
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCch
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
+...+...|+.+.|...++.+.+..|++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 566677788888888888888888887764
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.15 E-value=0.02 Score=52.01 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=40.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCch---HHHHHHHHHHhcCChHHHHH
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKPS---VYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 712 (733)
+...|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 456688999999999999999999999865 46788899999999985543
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.026 Score=50.60 Aligned_cols=137 Identities=8% Similarity=-0.037 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch-----HHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED-----HLS 629 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-----~~~ 629 (733)
.-+.++..+.-.|.+.-.+..+++.++.. -+-++.....|.+.-.+.|+.+.|...|++..+. .-..+.. +..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 34556666667778888888888888855 3445566777777788889998888888877655 2222322 223
Q ss_pred HHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 630 CMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
.....|.-++++.+|...++++. ..| ++...+.-.-+..-.|+...|++..+.+.+..|.....
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 33344556677777777777776 222 33334444444555678888888888888888875443
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0019 Score=47.23 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=51.4
Q ss_pred HHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 633 DLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
..|.+.+++++|.++++.+. ..| ++..+.....++...|++++|...++.+++..|+++.......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 56778888888888888766 444 4446677788888999999999999999999998877655443
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.12 E-value=0.01 Score=48.53 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=64.0
Q ss_pred HHHhhhcCChHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH---HHHHHHHHHh
Q 004733 632 LDLLGRAGYLDEAERVINSQH----IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV---YVLLSNIYAA 703 (733)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 703 (733)
.....+.|++++|.+.|+.+. ..| ....-..++.++.+.|+++.|...+++.++++|.++.+ ++..|.++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334456677777777776655 111 22345567788889999999999999999999887754 6666666777
Q ss_pred cCC---------------hHHHHHHHHHHHhCCC
Q 004733 704 AGL---------------WEEAANIRELLKRTGV 722 (733)
Q Consensus 704 ~g~---------------~~~A~~~~~~~~~~~~ 722 (733)
+.. ..+|..-|+++++.-+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 665 7788888888877543
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.3 Score=47.45 Aligned_cols=103 Identities=16% Similarity=0.052 Sum_probs=53.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhc
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRA 638 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (733)
.+.-+...|+...|.++-++. --||..-|...+.+++..++|++-.++-.. .-++.-|..+++++.+.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F-----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF-----KVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc-----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHC
Confidence 344445555555555554443 125555555666666666666555544321 11234555566666666
Q ss_pred CChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHH
Q 004733 639 GYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIA 680 (733)
Q Consensus 639 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 680 (733)
|+..+|..++.++. ...-+..|.+.|++.+|.+..
T Consensus 251 ~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHH
Confidence 66666666665533 133344455556655554443
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.015 Score=49.70 Aligned_cols=116 Identities=18% Similarity=0.169 Sum_probs=73.1
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHH
Q 004733 599 CSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRI 678 (733)
Q Consensus 599 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 678 (733)
....|+.+.+...++++...+.-++=.... ...-.......++... ......++..+...|+++.|..
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~--------~~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLD--------DEEWVEPERERLRELY----LDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGT--------TSTTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCC--------ccHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHHH
Confidence 345677888888888887653211111100 0111222222333221 2345667778889999999999
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCcCCC
Q 004733 679 IAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR-----TGVIKQP 726 (733)
Q Consensus 679 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 726 (733)
.++.+...+|.+...|..++.+|...|+..+|.++|+++.+ .|+.|.|
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 99999999999999999999999999999999999987643 4665544
No 209
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.02 E-value=0.014 Score=56.18 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=42.5
Q ss_pred HHHHHHHhhhc-CChHHHHHHHHhcC----CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc-------
Q 004733 628 LSCMLDLLGRA-GYLDEAERVINSQH----IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP------- 691 (733)
Q Consensus 628 ~~~l~~~~~~~-g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------- 691 (733)
+..+...|... |++++|.+.+++.. .... ...+..+...+.+.|++++|...+++.....-+++
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34444555555 55555555555433 0111 11234445555666666666666666555322111
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 692 SVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
..+...+.++...||...|.+.+++...
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1122334455556666666666665554
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.16 Score=45.77 Aligned_cols=172 Identities=12% Similarity=0.071 Sum_probs=115.5
Q ss_pred hhhHHHHHhhccCChhHHHHHhccCCC--CChh--------hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 004733 125 SWTTFLSACTKMGHVDYACEVFDKMPD--RDLP--------VYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFAS 194 (733)
Q Consensus 125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (733)
-++.+.+.+.-..-+++.+..++.-.. ..+. .-+.++.++.-.|.+.--..++.+.++.....++.-...
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 345555555544445555555544332 2222 345677777788888888899999988765566666666
Q ss_pred HHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHH-----HHhHhcCChHHHHHHHHhhhcCCC-CccchHHHHHHHH
Q 004733 195 VLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALI-----TMYFNCGNVVDACKVFEEAKGYVC-DHISYNVMMDGLA 267 (733)
Q Consensus 195 ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~ 267 (733)
+.+.. +.||.+.|...|++..+..-..+....+.++ ..+.-.+++..|...|+++....| |+..-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 66766 9999999999999887654444444443333 345667889999999988776444 4555555555556
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004733 268 SVGRVEEALIRFRDMLVASLRPSELTFVSVM 298 (733)
Q Consensus 268 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 298 (733)
-.|+..+|++.++.|++. .|...+-++++
T Consensus 298 Ylg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 678999999999999886 56555555443
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.01 Score=52.10 Aligned_cols=89 Identities=18% Similarity=0.413 Sum_probs=71.9
Q ss_pred CCChhhHHHHHHHHH-----hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc----------------CCHHHH
Q 004733 550 EKDTISWNALISAYA-----QHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHA----------------GLVDDG 608 (733)
Q Consensus 550 ~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~A 608 (733)
.++..+|..++..|. +.|..+=....++.|.+-| +.-|..+|+.|++.+=+. .+-+-|
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 456667777777765 4567777778888888888 888899999998877542 245679
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHhhhcCC
Q 004733 609 TRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGY 640 (733)
Q Consensus 609 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (733)
++++++|... |+.||.+++..+++.+++.+.
T Consensus 123 i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 9999999888 999999999999999988876
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.96 E-value=0.0017 Score=48.23 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhcc----CCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLER----EQD---KPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++..+...|...|++++|+..++++++. .++ -..++..++.+|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566666677777777777777777653 122 245688999999999999999999987654
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.078 Score=53.97 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSP 449 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (733)
.++++.....+++++|..+-+..++
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCcc
Confidence 4677888888999999999888874
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.84 E-value=0.38 Score=44.91 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhH----HHHHHHhcccCChHHHHHHHHHHHHc
Q 004733 455 WNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTL----SVALSSCARISSLRHGKQIHGYVLKN 516 (733)
Q Consensus 455 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~ 516 (733)
+-.....+...|++++|.+.|+++...- |+.... -.+..++.+.++++.|...++.+.+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455566788888888888877753 332211 23334555556666666666555554
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.021 Score=55.10 Aligned_cols=94 Identities=13% Similarity=-0.032 Sum_probs=77.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 704 (733)
.+..+.-++.+.+++.+|+...++.. .+++......-..++...|+++.|+..++++++..|+|..+...|+.+--+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 56678888999999999999988766 5666778888889999999999999999999999999999988888776665
Q ss_pred CChH-HHHHHHHHHHhC
Q 004733 705 GLWE-EAANIRELLKRT 720 (733)
Q Consensus 705 g~~~-~A~~~~~~~~~~ 720 (733)
.... ...++|..|-..
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 5444 447788888654
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.82 E-value=0.0082 Score=57.28 Aligned_cols=130 Identities=14% Similarity=0.057 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhH---hhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC--------CCCCh
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMV---NDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH--------IQARS 657 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~ 657 (733)
..|..|...|.-.|+++.|+..-+.-+ +.+|-... ...+..+..++.-.|+++.|.+.++.-. .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666667777788988887655432 22343322 3467778888999999999998887522 12223
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhcc----C--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLER----E--QDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.+-..+...|....++++|+....+=+++ . .....++..|+++|-..|..++|+.+.++-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566777777778888888877764442 2 34567788999999999999999988876554
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.082 Score=50.97 Aligned_cols=163 Identities=13% Similarity=0.060 Sum_probs=112.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChh-hHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCCHHHH---HHHHH-----
Q 004733 529 ITLYAKCGDLDCSLRVFNMMIEKDTI-SWNALISA--YAQHGEGKEAVSCFKAMQDVGRIKPDQATF---TAVLS----- 597 (733)
Q Consensus 529 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~---~~ll~----- 597 (733)
..++.-.|+.++|.+.-..+.+-|.. .+..++++ +-..++.+.|...|++.+. ..|+...- .....
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 35566778999998887777655443 33444443 3467789999999999988 45775432 12222
Q ss_pred -----HHhccCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhh---HHHHH
Q 004733 598 -----ACSHAGLVDDGTRIFDSMVNDYGFIPA-----EDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDN---WWALF 664 (733)
Q Consensus 598 -----~~~~~~~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~l~ 664 (733)
-..+.|.+..|.+.|.+.+ ++.|+ ...|........+.|+.++|+.-.+... .-|+.. +..-.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHH
Confidence 2346799999999999998 45665 4456666677789999999999888766 333332 33334
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 665 SACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 665 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
.++...++++.|++-++++.+...+ +.....|.+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLRE 362 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence 4567789999999999999998765 444444443
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.70 E-value=0.26 Score=44.90 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=46.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 662 ALFSACAAHGNLRLGRIIAGLLLEREQDKPSV---YVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 662 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.....|.+.|.+..|..-++.+++..|+.+.+ +..+.++|...|-.++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34566889999999999999999988776654 66777889999999999987765543
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.057 Score=50.17 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC---ChHHHHHHHHhcC-CCCChh-hH
Q 004733 586 KPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG---YLDEAERVINSQH-IQARSD-NW 660 (733)
Q Consensus 586 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~~~~-~~ 660 (733)
+-|...|..|...|...|+.+.|...|.+..+. -.+++..+..+..++..+. ...++.++|+++. .+|+.. ..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 445667888888888888888888888887765 2334555656655554332 3557777777766 445444 44
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
.-+...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 4455557788888888888888888776554
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.68 E-value=0.02 Score=45.20 Aligned_cols=87 Identities=20% Similarity=0.103 Sum_probs=41.2
Q ss_pred HhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch----HHHHHHHHHHhcCCh
Q 004733 634 LLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS----VYVLLSNIYAAAGLW 707 (733)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~ 707 (733)
++...|+++.|++.|.+.. .+..+..|+.-..++.-+|+.++|..-+++++++..+... .|..-+.+|-..|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3444555555555554432 2233344555555555555555555555555554422221 244444455555555
Q ss_pred HHHHHHHHHHHhC
Q 004733 708 EEAANIRELLKRT 720 (733)
Q Consensus 708 ~~A~~~~~~~~~~ 720 (733)
+.|+.-|+..-+.
T Consensus 132 d~AR~DFe~AA~L 144 (175)
T KOG4555|consen 132 DAARADFEAAAQL 144 (175)
T ss_pred HHHHHhHHHHHHh
Confidence 5555555544433
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.67 E-value=0.032 Score=55.33 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhcc---------CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh
Q 004733 568 EGKEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHA---------GLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR 637 (733)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~---------~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (733)
..+.|+.+|.+......+.|+.. .|..+..++... ....+|.++-++..+. -+-|+.....+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 45678888888883222667754 465555544321 2234555566666543 12334455566666666
Q ss_pred cCChHHHHHHHHhcC-CCCChh-hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH--HHHhcCChHHHHHH
Q 004733 638 AGYLDEAERVINSQH-IQARSD-NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN--IYAAAGLWEEAANI 713 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~ 713 (733)
.|+.+.|...|++.. ..|+.. .|......+.-.|+.++|...++++++++|....+-..-.+ .|+. ...++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 777788888877765 555543 55555666677788888888888888888776554333223 3443 445566665
Q ss_pred HH
Q 004733 714 RE 715 (733)
Q Consensus 714 ~~ 715 (733)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0097 Score=57.27 Aligned_cols=67 Identities=9% Similarity=-0.050 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 657 SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 657 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
..++..+..++.+.+++..|+....++++.+|++..+++.-+.+|...|+++.|+..|+++++..+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 3456778888899999999999999999999999999999999999999999999999999876543
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.16 Score=47.04 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=69.3
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHH---HHHHHHhhCCHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWA---LFSACAAHGNLR 674 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 674 (733)
.....|+..+|...|+..... .+-+......++.+|...|+.+.|..++..++.......+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 344566777777777777655 222345556667777777777777777777663333333322 222233333322
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 675 LGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 675 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+.. .++.-...+|+|...-..|+..|...|+.++|.+.|=.+.+
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 221 23344556777777777777777777777777776555443
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.47 E-value=1 Score=44.32 Aligned_cols=140 Identities=14% Similarity=0.240 Sum_probs=102.6
Q ss_pred HhHHHHHHHhcccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhH-HHHHHHH
Q 004733 488 YTLSVALSSCARISSLRHGKQIHGYVLKNN-LISKMSLGNAMITLYAKCGDLDCSLRVFNMMI--EKDTISW-NALISAY 563 (733)
Q Consensus 488 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~-~~l~~~~ 563 (733)
..|...+++..+...++.|..+|.++.+.+ +.+++.+++++++-++. |+...|..+|+--. -+|...| +..+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 456677777778888889999999999888 67888899999987765 77888888888654 2555544 4566667
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPD--QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLD 633 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 633 (733)
...++-+.|..+|+..+.. +..+ ...|..+|..-+.-|+...+..+=+++... -|...+......
T Consensus 477 i~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~S 543 (660)
T COG5107 477 IRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTS 543 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHH
Confidence 7888888999999976653 2333 457888888888888888888888888765 444433333333
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.02 Score=52.34 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLEREQDK---PSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.-|..++...|+++.|...+..+.+..|+. |..+.-|+.+..+.|+.++|..+|+++.++.+
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 335555566666666666666666655544 34466666667777777777777776666544
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.25 E-value=0.46 Score=38.01 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=87.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDE 643 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (733)
.-.|..++..++..+..... +..-++.++--....-+-+-..+.++.+=+-|.+.|- .....++.+|.+.|..
T Consensus 13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcch--
Confidence 45688888888888887643 4444555554444444556667777766443222221 1334555666555543
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 644 AERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 644 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
.......+..+..+|.-+.-..++..+.+-+..+|.++..++.+|.+.|+..+|-+++.+.=+.|++
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3334455677888999998889999988877778999999999999999999999999999998874
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.22 E-value=0.25 Score=51.30 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-----HHHHHHHHHh----ccCCHHHHHHHHHHhHhhcCCCCCch
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA-----TFTAVLSACS----HAGLVDDGTRIFDSMVNDYGFIPAED 626 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-----~~~~ll~~~~----~~~~~~~A~~~~~~~~~~~~~~p~~~ 626 (733)
...++....-.||-+.+++.+.+..+.+.+.-... .|...+..+. .....+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 44556666667777888887777666442222211 2333333332 245677888888888866 56655
Q ss_pred HHHH-HHHHhhhcCChHHHHHHHHhcCC------CCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHH-HHH
Q 004733 627 HLSC-MLDLLGRAGYLDEAERVINSQHI------QARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYV-LLS 698 (733)
Q Consensus 627 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~ 698 (733)
.|.. -.+.+...|+.++|++.|++... +-....+..+.+.+....++++|...+..+.+...-...+|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5543 35667778889999999886441 112234567778888899999999999999997766555544 445
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHh
Q 004733 699 NIYAAAGLW-------EEAANIRELLKR 719 (733)
Q Consensus 699 ~~~~~~g~~-------~~A~~~~~~~~~ 719 (733)
-++...|+. ++|.+++.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 667788988 888888877644
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.22 E-value=0.19 Score=45.57 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=75.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhh
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLG 636 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~ 636 (733)
....+...|++++|.+.|+++.......|- ......++.++.+.|+++.|...+++.++.+.-.|... .+-.++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344556677888888888888775301111 13345566677777888888888888777644443322 1111111111
Q ss_pred hcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH-----------------HHHHHH
Q 004733 637 RAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV-----------------YVLLSN 699 (733)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~ 699 (733)
+. ..... ......+...+|...++.+++..|+++-+ -..++.
T Consensus 91 ~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 91 KQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00000 00112223445666666666666665433 235678
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 004733 700 IYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
.|.+.|.+..|..-++.+.+.-
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHC
Confidence 8999999999999999988754
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.74 Score=41.33 Aligned_cols=111 Identities=11% Similarity=-0.041 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHhHhhcCC----CCCchHHHHHHHHhhhcCChHHHHHHHHhcC-------CCCCh-hhHHHHHHHHHhh
Q 004733 603 GLVDDGTRIFDSMVNDYGF----IPAEDHLSCMLDLLGRAGYLDEAERVINSQH-------IQARS-DNWWALFSACAAH 670 (733)
Q Consensus 603 ~~~~~A~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~ 670 (733)
.++++|+++|++...-... ..-.+.+......|.+..++++|-..+.+-. .-++. ..+...+-.+.-.
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~ 203 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA 203 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH
Confidence 3455555555554433111 1112344555667777777777766665432 11221 1234444455666
Q ss_pred CCHHHHHHHHHHHhc----cCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 004733 671 GNLRLGRIIAGLLLE----REQDKPSVYVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 671 g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (733)
.|+..|+..++...+ ..|++..+...|.. .+..|+.+++.+++
T Consensus 204 ~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~-ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 204 HDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT-AYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhcchhcCccccChHHHHHHHHHHH-HhccCCHHHHHHHH
Confidence 788888888888666 34667777777765 44678888777665
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.043 Score=46.79 Aligned_cols=73 Identities=15% Similarity=0.298 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhh----cCCCCCchHHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVND----YGFIPAEDHLS 629 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~p~~~~~~ 629 (733)
....++..+...|++++|..+.+.+.... +-|...|..++.+|...|+...|.+.|+.+.+. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556677778899999999999998854 445678889999999999999999988887543 58888876644
No 231
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.18 Score=47.23 Aligned_cols=159 Identities=14% Similarity=0.047 Sum_probs=100.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHH----HHHHhhhcCC
Q 004733 565 QHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSC----MLDLLGRAGY 640 (733)
Q Consensus 565 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~ 640 (733)
-+|+..+|...|+++.+. .+.|...+..-=.+|...|+.+.-...++++..+ ..|+...|.. +.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 346777777777777764 3556666666666777778777777777777654 4555544433 3445567788
Q ss_pred hHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC----chHHHHHHHHHHhcCChHHHHHHH
Q 004733 641 LDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK----PSVYVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 641 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 714 (733)
+++|++.-++.. +.+ |.-...+....+.-.|+++++.++.++-...-... ..-|-+.+..|...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888888777655 222 22344556666667778888877776654432211 122556666677778888888888
Q ss_pred HHHHhCCCcCCCc
Q 004733 715 ELLKRTGVIKQPG 727 (733)
Q Consensus 715 ~~~~~~~~~~~~~ 727 (733)
++-.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7655555555544
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.56 Score=43.63 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=108.9
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 540 CSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 540 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
...+++++...+....--.-.......|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 44455555544322211222334567788999999999888854 223455667788888999999999998887543
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccC--CCCchHHHH
Q 004733 620 GFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLERE--QDKPSVYVL 696 (733)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 696 (733)
--.........-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|...+-.++..+ -.+...-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 111111222334555666666665555555555466 45566777888888999998888887777754 556777788
Q ss_pred HHHHHHhcCChHHHHH
Q 004733 697 LSNIYAAAGLWEEAAN 712 (733)
Q Consensus 697 l~~~~~~~g~~~~A~~ 712 (733)
|..++...|..+.+..
T Consensus 278 lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 278 LLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHhcCCCCHHHH
Confidence 8888888885554433
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.96 E-value=1.4 Score=41.13 Aligned_cols=191 Identities=17% Similarity=0.139 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHH
Q 004733 524 LGNAMITLYAKCGDLDCSLRVFNMMIE-----KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLS 597 (733)
Q Consensus 524 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~ 597 (733)
.+......+...+++..+...+..... .....+......+...+++..+...+....... ++. ........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 137 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD---PDPDLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC---CCcchHHHHHHH
Confidence 334444455555555555555544331 222334444445555555666666666665532 221 11112222
Q ss_pred -HHhccCCHHHHHHHHHHhHhhcCCCC----CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC--hhhHHHHHHHHHh
Q 004733 598 -ACSHAGLVDDGTRIFDSMVNDYGFIP----AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR--SDNWWALFSACAA 669 (733)
Q Consensus 598 -~~~~~~~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~ 669 (733)
.+...|+++.|...+++.... .| ....+......+...++.+++...+.... ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL---DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 455666666666666666321 22 12222333333455566666666665544 2222 3445555555666
Q ss_pred hCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 670 HGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 670 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
.++++.|...+..+....|.....+..++..+...|..+++...+.+....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666665555555555555555566666666655443
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.91 E-value=1.8 Score=41.88 Aligned_cols=278 Identities=14% Similarity=0.091 Sum_probs=139.8
Q ss_pred hcCCHHHHHHHHHhccc---CCcccHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHH
Q 004733 335 SCGKIDEACMIFARLQE---KDIVSWNTMISTY--AQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIH 409 (733)
Q Consensus 335 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 409 (733)
..|+-..|.+.-.+-.+ .|....-.++.+. .-.|+++.|.+-|+.|... |...... +
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllG--L------------- 157 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLG--L------------- 157 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHh--H-------------
Confidence 45777777777665543 4555555555444 3468999999999998752 3222221 1
Q ss_pred HHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCC
Q 004733 410 AFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSE-LRP 485 (733)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p 485 (733)
..|.-..-+.|..+.|...-+..- +.-...+...+...|..|+|+.|+++.+.-.... +.+
T Consensus 158 ---------------RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 158 ---------------RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred ---------------HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 223333446777777777776654 2334577888888899999999999888765543 334
Q ss_pred CHHh--HHHHHHHhcc---cCChHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH
Q 004733 486 DEYT--LSVALSSCAR---ISSLRHGKQIHGYVLKNNLISKMSL-GNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNAL 559 (733)
Q Consensus 486 ~~~~--~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 559 (733)
+..- -..++.+-.. ..+...|...-.+..+ ..|+..- --.-..++.+.|+..++-.+++.+-+..++.--..
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 4321 1222222211 1122333333222222 2222111 01223455566666666666666543222211111
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhc
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRA 638 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (733)
+-.+.+.|+ .++.-+++..+..-++||. .+...+..+....|++..|..--+.... ..|....|..|.+.-...
T Consensus 301 lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAe 375 (531)
T COG3898 301 LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAE 375 (531)
T ss_pred HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhc
Confidence 222233333 2332233322211144443 3344444555556666666555555442 355555555555554333
Q ss_pred -CChHHHHHHHHhcC
Q 004733 639 -GYLDEAERVINSQH 652 (733)
Q Consensus 639 -g~~~~A~~~~~~~~ 652 (733)
|+-.++...+.+..
T Consensus 376 tGDqg~vR~wlAqav 390 (531)
T COG3898 376 TGDQGKVRQWLAQAV 390 (531)
T ss_pred cCchHHHHHHHHHHh
Confidence 66666665555443
No 235
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.88 E-value=2.2 Score=42.79 Aligned_cols=106 Identities=11% Similarity=0.151 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhH
Q 004733 540 CSLRVFNMMIEKDTISW-NALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSAC--SHAGLVDDGTRIFDSMV 616 (733)
Q Consensus 540 ~A~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~A~~~~~~~~ 616 (733)
.....+..+..++..++ +.++.-+.+.|-..+|...+..+.... +|+...|..++..- ....+...+..+|+.|.
T Consensus 446 ~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 446 LIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP--PFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC--CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 34444555555665554 445666667777777887777777743 44555666666532 22334667777777777
Q ss_pred hhcCCCCCchHHHHHHHHhhhcCChHHHHHHHH
Q 004733 617 NDYGFIPAEDHLSCMLDLLGRAGYLDEAERVIN 649 (733)
Q Consensus 617 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 649 (733)
..+| .++..|...+..=...|..+.+-.++.
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYW 554 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHH
Confidence 7766 455566555554445555555544443
No 236
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.85 E-value=3.5 Score=44.78 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS 502 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 502 (733)
...+..+.+.+++.....++.. .+.+...-.....+....|+.++|....+.+=..| ...+.....++..+.+.|.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 3455566677888877773322 34455555667777778888777776666665444 2233444555555554443
No 237
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=3.1 Score=44.00 Aligned_cols=111 Identities=12% Similarity=0.057 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchH
Q 004733 324 SVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIE 403 (733)
Q Consensus 324 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 403 (733)
-+.+..+.-+...|+..+|.++-.+.+-||-..|-.=+.+++..+++++-+++-+.+.. +.-|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy----------- 747 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGY----------- 747 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCc-----------
Confidence 34455566677889999999999999889999999899999999999887776665542 1112
Q ss_pred HHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHH
Q 004733 404 MVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSE 477 (733)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 477 (733)
.-.+..|.+.|+.++|.+.+.....-. ....+|.+.|++.+|.++--+
T Consensus 748 ---------------------~PFVe~c~~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 748 ---------------------LPFVEACLKQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---------------------hhHHHHHHhcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHHHH
Confidence 446678889999999999988775321 567788888888888776544
No 238
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.78 E-value=0.013 Score=43.35 Aligned_cols=27 Identities=11% Similarity=-0.100 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
++..+..++...|++++|+..++++.+
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555556666666666666666554
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.66 E-value=2.5 Score=41.74 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=108.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchH-HHH
Q 004733 552 DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDH-LSC 630 (733)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~-~~~ 630 (733)
-...|-..+....+..-.+.|..+|-+..+.|.+.++...+++++..++ .|+...|-.+|+-=... .||... ...
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 3456777777777777888999999999988856677778888888765 46788899999877755 445444 356
Q ss_pred HHHHhhhcCChHHHHHHHHhcC----CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 631 MLDLLGRAGYLDEAERVINSQH----IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
.+.-+.+.++-+.|..+|+... ...-...|..++..-..-|+...+..+-++..+..|.....-..+.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHH
Confidence 6777888999999999998543 2222557888888888999999999999999999888755444443
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.63 E-value=0.17 Score=41.27 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
..++..++.++++.|+++....+++..-.-++.. -...+. --.... ..|+..+..+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~sp-l~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSP-LYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCC-CCCCHHHHHHHHHHHHh
Confidence 3456667777777777777776666543211110 000000 111222 67888888888888888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHh
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLL 635 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (733)
.|++..|.++++...+.++++.+...|..|++-.
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8888888888888888888777777777776543
No 241
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.60 E-value=0.033 Score=53.33 Aligned_cols=90 Identities=16% Similarity=0.005 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHh-cC---CC----CChhhHHHHHHHHHhhCCHHHHHHHHHHHhcc----C--CCCch
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINS-QH---IQ----ARSDNWWALFSACAAHGNLRLGRIIAGLLLER----E--QDKPS 692 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~-~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~ 692 (733)
.|..|...|.-.|+++.|+..-+. +. .- .....+..+..++.-.|+++.|.+.|+..+.+ . ...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 556666777778899999876442 11 11 11234566778888899999999999986653 2 23455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 004733 693 VYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
..+.|++.|.-...+++|+.++.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 688999999999999999998764
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.59 E-value=0.89 Score=45.62 Aligned_cols=101 Identities=9% Similarity=0.110 Sum_probs=69.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChh--hHHHHHHHHH
Q 004733 593 TAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSD--NWWALFSACA 668 (733)
Q Consensus 593 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~--~~~~l~~~~~ 668 (733)
..+..++-+.|+.++|++.+++|.+.+.......+...|+.+|...+.+.++..++.+.. .-|... .|...+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 346667778999999999999998762222234466789999999999999999998865 123333 3444433333
Q ss_pred hhCC---------------HHHHHHHHHHHhccCCCCchH
Q 004733 669 AHGN---------------LRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 669 ~~g~---------------~~~A~~~~~~~~~~~p~~~~~ 693 (733)
..|| -..|.+.+.++.+.+|.-|..
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 3333 134678899999988876654
No 243
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=4.2 Score=43.69 Aligned_cols=148 Identities=12% Similarity=0.027 Sum_probs=83.7
Q ss_pred hhHHHHHhhccCChhHHHHHhccCCCCChh---hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-cc
Q 004733 126 WTTFLSACTKMGHVDYACEVFDKMPDRDLP---VYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DA 201 (733)
Q Consensus 126 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~ 201 (733)
...-+..+.+...++.|..+.+.-..+... .......-+.+.|++++|...|-+-... +.| ..++.-+ ..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 344555666667777777766554432111 2233344566778888887777665431 112 1233444 55
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHH
Q 004733 202 GLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRD 281 (733)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 281 (733)
.....-..+++.+.+.|+...- .-+.|+.+|.+.++.++..++.+.... .--..-....+..+.+.+-.++|..+-..
T Consensus 411 q~IknLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5566666677777777754333 336688888888888888777766541 01122244555555555555555555433
No 244
>PRK15331 chaperone protein SicA; Provisional
Probab=95.49 E-value=0.33 Score=41.03 Aligned_cols=89 Identities=7% Similarity=-0.050 Sum_probs=51.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDE 643 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (733)
-..|++++|..+|+-+.-.+ .-+..-+..|..+|-..+.+++|+..|...... + .-|+..+-....++...|+.+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 45677777777777766633 223333444555555666777777776666543 2 2233334445666666777777
Q ss_pred HHHHHHhcCCCCC
Q 004733 644 AERVINSQHIQAR 656 (733)
Q Consensus 644 A~~~~~~~~~~~~ 656 (733)
|+..|+.....|.
T Consensus 124 A~~~f~~a~~~~~ 136 (165)
T PRK15331 124 ARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHhCcc
Confidence 7766666554443
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.47 E-value=1.3 Score=37.34 Aligned_cols=126 Identities=10% Similarity=0.113 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHh
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLL 635 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (733)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+..+.++. .++......++..+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 4456666666677777777777777765 245556677777776543 3344444442 12233344456666
Q ss_pred hhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhh-CCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 636 GRAGYLDEAERVINSQHIQARSDNWWALFSACAAH-GNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
.+.+.++++.-++.++.. +...+..+... ++++.|.+.+++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666777777777666541 22233333333 677777777665 335666666665544
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=95.46 E-value=0.66 Score=46.42 Aligned_cols=143 Identities=10% Similarity=0.042 Sum_probs=92.5
Q ss_pred CHHHHHHHHHhcC---CCC---hhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 537 DLDCSLRVFNMMI---EKD---TISWNALISAYAQ---------HGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 537 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
..+.|..+|.+.. +-| ...|..+..++.. ..+..+|.++.++..+.+ +-|......+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 3567888888877 434 3456555555432 123456778888888865 4456666666666666
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhhcCChHHHHHHHHh-cCCCCChh---hHHHHHHHHHhhCCHHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGRAGYLDEAERVINS-QHIQARSD---NWWALFSACAAHGNLRLG 676 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~---~~~~l~~~~~~~g~~~~A 676 (733)
.++.+.|...|++... +.|+.. .+......+.-+|+.++|.+.+++ +...|... .....+..|+.+ -.+.|
T Consensus 351 ~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 7779999999999884 467643 666666677778999999999888 44666533 223333345444 45666
Q ss_pred HHHHHHHhc
Q 004733 677 RIIAGLLLE 685 (733)
Q Consensus 677 ~~~~~~~~~ 685 (733)
+.++-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 766655333
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.40 E-value=0.46 Score=39.19 Aligned_cols=116 Identities=11% Similarity=0.019 Sum_probs=61.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCC
Q 004733 562 AYAQHGEGKEAVSCFKAMQDVGRIKP-DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGY 640 (733)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (733)
...+.|++++|.+.|+.+...-...| ....-..++.+|.+.+++++|...+++.++.+.-.|+. -|.....++..-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHH
Confidence 34456777777777777766431111 12345556667777777777777777777653333332 23333333332222
Q ss_pred hHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 641 LDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 641 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
.+..+.-+-. .+ ...+....|...++.++...|++.-+
T Consensus 98 ~~~~~~~~~~--~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 98 DEGSLQSFFR--SD-------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hhhHHhhhcc--cc-------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 2211111110 01 11223567888899999999987643
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.24 Score=46.40 Aligned_cols=114 Identities=11% Similarity=-0.031 Sum_probs=93.6
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHH----HHHHHHHhhCCHH
Q 004733 601 HAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWW----ALFSACAAHGNLR 674 (733)
Q Consensus 601 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~----~l~~~~~~~g~~~ 674 (733)
-.|...+|...|++++++ ++-|.-.+...=+++.-.|+.+.-...++++. -.|+.+.|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467888899999999986 56666677777788888999998888888876 356665442 3334456889999
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 004733 675 LGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 675 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
+|+...+++.+++|.|.-+.-.++.++...|+.+++.+...+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 999999999999999999999999999999999999987653
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.33 Score=44.64 Aligned_cols=91 Identities=29% Similarity=0.374 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ----ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSC 630 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 630 (733)
|+.-+..+ +.|++..|...|...++.. |+. ..+..|..++...|++++|..+|..+.+.++-.|. ++.+-.
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y---P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKY---PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcC---CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 44433332 2344555555555555532 322 23444555555555555555555555554333333 234444
Q ss_pred HHHHhhhcCChHHHHHHHHh
Q 004733 631 MLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~ 650 (733)
|..+..+.|+.++|..+|+.
T Consensus 221 lg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHH
Confidence 44444444444444444443
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=5.4 Score=42.98 Aligned_cols=54 Identities=7% Similarity=0.054 Sum_probs=35.0
Q ss_pred HHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 631 MLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
++..+....+.+.+..+.+... +.++..|..++..+...+..+.-.+...+.++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 4555666667777777777766 33677777788887777765555444444443
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.26 E-value=0.36 Score=45.87 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=22.8
Q ss_pred HhCCCchHHHHHHHHHHHCC--CCCCHHhHHHHHHHhcccCChHHHHH
Q 004733 463 LLNGFPVQGLQHFSELLMSE--LRPDEYTLSVALSSCARISSLRHGKQ 508 (733)
Q Consensus 463 ~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~ 508 (733)
....+.++|+..+.+-..+- ..-.-.++..+..+.++.|.+++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34566677777776655431 11112344444555555555554443
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.26 E-value=6.7 Score=44.10 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=35.9
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHH--hHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 004733 464 LNGFPVQGLQHFSELLMSELRPDEY--TLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCS 541 (733)
Q Consensus 464 ~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 541 (733)
..|+|.+|+.+..++... -|.. +-..+...+...++.-+|-++..+.... ....+..+++...|++|
T Consensus 977 ~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHH
Confidence 345555555555544321 1111 1133444444455554544444433221 13345566666777777
Q ss_pred HHHHHhcCC
Q 004733 542 LRVFNMMIE 550 (733)
Q Consensus 542 ~~~~~~~~~ 550 (733)
.++.....+
T Consensus 1046 lrva~~~~~ 1054 (1265)
T KOG1920|consen 1046 LRVASKAKR 1054 (1265)
T ss_pred HHHHHhccc
Confidence 776665543
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.09 E-value=0.22 Score=45.49 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=69.6
Q ss_pred HHHHHhccCC--CCChhhHHHHHHHHhh-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccC----------
Q 004733 141 YACEVFDKMP--DRDLPVYNAMITGCTE-----NGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAG---------- 202 (733)
Q Consensus 141 ~a~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~---------- 202 (733)
..+..|...+ ++|..+|-..+..+.. .++.+-.-..++.|.+.|+..|..+|+.++..+ +..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 5678888888887754 356777777889999999999999999999877 321
Q ss_pred ------chHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCC
Q 004733 203 ------LLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGN 238 (733)
Q Consensus 203 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 238 (733)
.-+-+..++++|..+|+.||..+-..|+.++.+.+-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223455666666666776666666666666665554
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.99 E-value=0.065 Score=31.69 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 693 VYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++..++.+|...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 255
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.98 E-value=0.23 Score=49.44 Aligned_cols=68 Identities=16% Similarity=0.040 Sum_probs=58.4
Q ss_pred CCCcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCc----ccHHHHHHHHhccchhhhhhhHHHHHHHc
Q 004733 16 TSKELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDI----YSLSTTLAACANLRNAAFGNQLHAYALRA 86 (733)
Q Consensus 16 ~~~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 86 (733)
..|.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|+..|+.++|...++..++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566788999999999999999999999998664 5554 35899999999999999999999998875
No 256
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.87 E-value=0.1 Score=44.93 Aligned_cols=102 Identities=7% Similarity=-0.025 Sum_probs=68.1
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCCch-----HHHHHHHHhhhcCChHHHHHHHHhcC-CCCCh-hhHHHHHHHHHh
Q 004733 597 SACSHAGLVDDGTRIFDSMVNDYGFIPAED-----HLSCMLDLLGRAGYLDEAERVINSQH-IQARS-DNWWALFSACAA 669 (733)
Q Consensus 597 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~ 669 (733)
.-+...|++++|..-|...+.. .++... .|..-..++.+.+.++.|++-..+.. ..|.. .....-..+|-+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3567889999999999988876 333322 33344556778888888887776644 44432 233444556777
Q ss_pred hCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 670 HGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 670 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
...++.|+.-|+++++.+|....+-...+.+
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7788888888888888888776554444443
No 257
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=6.7 Score=41.90 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHH
Q 004733 595 VLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLR 674 (733)
Q Consensus 595 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 674 (733)
.+..|.+.|-+++..-++.+| | .+..+|.-.--+.++.++|+++... ..|...|..|+..+...-.+-
T Consensus 640 A~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~ 707 (846)
T KOG2066|consen 640 ALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFI 707 (846)
T ss_pred HHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHH
Confidence 344455555555555555555 2 1222333333345666666666665 678889999998888777766
Q ss_pred HHH
Q 004733 675 LGR 677 (733)
Q Consensus 675 ~A~ 677 (733)
.++
T Consensus 708 ~~l 710 (846)
T KOG2066|consen 708 KAL 710 (846)
T ss_pred HHH
Confidence 655
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.71 E-value=0.32 Score=44.45 Aligned_cols=109 Identities=14% Similarity=0.287 Sum_probs=80.7
Q ss_pred HHHHHhcC--CCChhhHHHHHHHHH-----hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-----------
Q 004733 542 LRVFNMMI--EKDTISWNALISAYA-----QHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG----------- 603 (733)
Q Consensus 542 ~~~~~~~~--~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----------- 603 (733)
+..|.... +.|-.+|...+..+. +.+..+-....++.|.+-| +.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 44555554 556777777777665 3456777778888999999 9999999999998775532
Q ss_pred -----CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCCh-HHHHHHHHhcC
Q 004733 604 -----LVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYL-DEAERVINSQH 652 (733)
Q Consensus 604 -----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 652 (733)
+-+-++.++++|... |+.||.++-..|+.++++.+-. .+...+.--|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 334688999999887 9999999999999999988873 34444444333
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.65 E-value=0.12 Score=41.03 Aligned_cols=56 Identities=21% Similarity=0.070 Sum_probs=51.9
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 665 SACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 665 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
-+....|+++.|++.+.+++.+-|..+++|+.-+++|--+|+.++|++-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999999999999988763
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.61 E-value=1.2 Score=39.16 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 004733 553 TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCM 631 (733)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 631 (733)
+..||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++--.|+++-|.+-+...-+. .|+...-...
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDPFRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCChHHHHH
Confidence 34667666666777888888888888777 33432 12211112333567777777665555443 3332211111
Q ss_pred HHHhhhcCChHHHHHHH-HhcCCCCChhhHHHHHHH-HHhhCCHHHHHHHHHHHhccCCCC-------chHHHHHHHHHH
Q 004733 632 LDLLGRAGYLDEAERVI-NSQHIQARSDNWWALFSA-CAAHGNLRLGRIIAGLLLEREQDK-------PSVYVLLSNIYA 702 (733)
Q Consensus 632 ~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~ 702 (733)
+..-...-++.+|..-+ ++.. ..+..-|...+-. |..+=.. +.+++++.+...++ ..+|..|+.-|.
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 22222333556665433 3333 3344444333322 2211111 12233333322222 345777888888
Q ss_pred hcCChHHHHHHHHHHHh
Q 004733 703 AAGLWEEAANIRELLKR 719 (733)
Q Consensus 703 ~~g~~~~A~~~~~~~~~ 719 (733)
..|+.++|..+|+-...
T Consensus 249 ~~G~~~~A~~LfKLaia 265 (297)
T COG4785 249 SLGDLDEATALFKLAVA 265 (297)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 88888888888876554
No 261
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.56 E-value=5.2 Score=40.21 Aligned_cols=149 Identities=6% Similarity=-0.037 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--ch
Q 004733 552 DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKP---DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA--ED 626 (733)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~ 626 (733)
...+|..++..+.+.|+++.|...+.++...+ ..+ .+.....-+...-..|+..+|...++..... .+... ..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~-~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLN-PSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC-CcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 44567788888888999999988888887643 111 2233334455566778888888888888763 12211 11
Q ss_pred HHHHHHHHhhhcCChHHHHHH-HHhcCCCCChhhHHHHHHHHHhh------CCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 627 HLSCMLDLLGRAGYLDEAERV-INSQHIQARSDNWWALFSACAAH------GNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
....+...+.. ..+..... ............+..+...+... ++.+.+...+..+.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000011223333333344 78899999999999999999999998888
Q ss_pred HHHhc
Q 004733 700 IYAAA 704 (733)
Q Consensus 700 ~~~~~ 704 (733)
.+...
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 77654
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.55 E-value=6.7 Score=40.63 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=120.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIEKD---TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS 597 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 597 (733)
...+|...+.-..+.|+.+.+.-+|++..-|- ...|-..+.-....|+.+.|..++....+-. ++..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 45567777777778888888888888887552 2344444444445588888888888777654 3333333222222
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhhcCChHHHH---HHHHhcC-CCCChhh----HHHHHHH-H
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGRAGYLDEAE---RVINSQH-IQARSDN----WWALFSA-C 667 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~----~~~l~~~-~ 667 (733)
.+-..|+.+.|..+++.+.+. . |+.. .-..-+....+.|..+.+. +++.... ...+... +..+.+. +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 345678999999999999987 3 6533 3333456667888888887 4444433 2222222 2233333 3
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 705 (733)
...++.+.|..++.++.+..|++...|..+.......+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45788999999999999999999999988887776665
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.52 E-value=0.087 Score=33.54 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 691 PSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 691 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
|..+..++.+|...|++++|+++|++..+..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999999987653
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.50 E-value=0.79 Score=46.93 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=88.7
Q ss_pred HHHHhcCCHHHHHHHHH--hcC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHH
Q 004733 530 TLYAKCGDLDCSLRVFN--MMI-EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVD 606 (733)
Q Consensus 530 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 606 (733)
....-.++++++.++.. .+. .-.....+.++.-+.+.|.++.|+++.+ |+.+ -.+...+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~----------D~~~---rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT----------DPDH---RFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-----------HHH---HHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC----------ChHH---HhHHHHhcCCHH
Confidence 33445577777655554 222 1123345666777777777777776432 3222 123344667777
Q ss_pred HHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 004733 607 DGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLER 686 (733)
Q Consensus 607 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 686 (733)
.|.++.++. ++...|..|.+...+.|+++-|.+.+++.. .+..++-.|...|+.+.-..+.+.+.+.
T Consensus 336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777654433 356688888888888888888888887754 3556666777788877767776666554
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 004733 687 EQDKPSVYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 687 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
.- +..-..++.-.|+.++..++|.+
T Consensus 403 ~~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 33334456667888888887763
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.39 E-value=4.3 Score=37.74 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=128.0
Q ss_pred HhHHHHHHHhcccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-hhHHHHHH-H
Q 004733 488 YTLSVALSSCARISSLRHGKQIHGYVLKN-NLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--KDT-ISWNALIS-A 562 (733)
Q Consensus 488 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~ 562 (733)
..+......+...+....+...+...... ........+......+...++...+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344444444444455444444444332 2223334444555566666777778887777664 222 22233333 6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhh
Q 004733 563 YAQHGEGKEAVSCFKAMQDVGRIKP----DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGR 637 (733)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 637 (733)
+...|+++.|...+++.... .| ....+......+...++.+.+...+...... ... ....+..+...+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 140 LYELGDYEEALELYEKALEL---DPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHH
Confidence 78889999999999998662 33 2233444444567788999999999999865 233 36678888888889
Q ss_pred cCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 638 AGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
.++++.|...+.... ..|+ ...+......+...|..+.+...+.+..+..|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999888766 3444 344555555555777899999999999999987
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.32 E-value=0.1 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 693 VYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
++..|+.+|...|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.27 E-value=7.1 Score=43.93 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH
Q 004733 26 ISLANLSRSGHYQDALHLFVQIH 48 (733)
Q Consensus 26 ~~l~~~~~~~~~~~a~~~~~~~~ 48 (733)
..++.+..+++|.+|..+-++.+
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhR 704 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHR 704 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777778887776666553
No 268
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.27 E-value=0.092 Score=31.01 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
..+..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45677888999999999999999999999985
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.26 E-value=4.4 Score=37.25 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=37.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHH
Q 004733 360 MISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQ 439 (733)
Q Consensus 360 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (733)
+.+-|.+.|.+..|..-+++|.+. ..-+..+.-++ -.+..+|...|-.++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL-----------------------------~~l~eaY~~lgl~~~ 222 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREAL-----------------------------ARLEEAYYALGLTDE 222 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHH-----------------------------HHHHHHHHHhCChHH
Confidence 456788889999999999998886 33333333222 345666777777666
Q ss_pred HHHHHhhc
Q 004733 440 AYQIFHNM 447 (733)
Q Consensus 440 A~~~~~~~ 447 (733)
|.+.-+-+
T Consensus 223 a~~~~~vl 230 (254)
T COG4105 223 AKKTAKVL 230 (254)
T ss_pred HHHHHHHH
Confidence 66554444
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.20 E-value=2.5 Score=35.54 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChH
Q 004733 195 VLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVE 273 (733)
Q Consensus 195 ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 273 (733)
++..+ ..+.......+++.+.+.+ ..++...+.++..|++.+ ..+..+.+.. . .+.......+..|.+.+-++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K--SNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--cccCCHHHHHHHHHHcCcHH
Confidence 33333 3444555555555555544 245556666777776553 2333444442 1 33344445666666667777
Q ss_pred HHHHHHHHH
Q 004733 274 EALIRFRDM 282 (733)
Q Consensus 274 ~a~~~~~~m 282 (733)
++..++..+
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 776666655
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.17 E-value=0.094 Score=31.02 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 693 VYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+|..+|.+|...|++++|+..+++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555554443
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.07 E-value=2.2 Score=43.01 Aligned_cols=69 Identities=9% Similarity=-0.060 Sum_probs=40.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcC-CCCC---hhhHHHHHHHHHhhCCHHHHHHHHHHHhccC-CCCchHHHHH
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQH-IQAR---SDNWWALFSACAAHGNLRLGRIIAGLLLERE-QDKPSVYVLL 697 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 697 (733)
..+..++.+.|+.++|.+.++++. ..|. ......++.++...+.+.++..++.+.-+.. |+.+.+.+.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 445666666777777777766654 2222 1234566666777777777777776665442 5555544433
No 273
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.94 E-value=3.7 Score=35.27 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=79.2
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 004733 209 QLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVA-SL 287 (733)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~ 287 (733)
++...+.+.+++|+...+..+++.+.+.|++.....++.--.- +|.......+-.+. +....+.++--+|.++ +
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi--~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVI--PDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhccc--CCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-
Confidence 4555566677777777888888888888877766666654222 33333333222221 1222233332233221 0
Q ss_pred CCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhc
Q 004733 288 RPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQR 367 (733)
Q Consensus 288 ~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 367 (733)
..+..+++.+...|++-+|.++.+.....+......++.+-.+.
T Consensus 90 ------------------------------------~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~ 133 (167)
T PF07035_consen 90 ------------------------------------TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANS 133 (167)
T ss_pred ------------------------------------hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHc
Confidence 01244566777889999999888887665556667778887777
Q ss_pred CChHHHHHHHHHHHHC
Q 004733 368 NLGRSAILAYLEMQSV 383 (733)
Q Consensus 368 g~~~~a~~~~~~m~~~ 383 (733)
+|...-..+++-....
T Consensus 134 ~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 134 NDDQLFYAVFRFFEER 149 (167)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7776666666655543
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.93 E-value=0.9 Score=47.29 Aligned_cols=143 Identities=17% Similarity=0.111 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchH-----HHHHHHHhh----hcCChHH
Q 004733 573 VSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDH-----LSCMLDLLG----RAGYLDE 643 (733)
Q Consensus 573 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~-----~~~l~~~~~----~~g~~~~ 643 (733)
.-+|.-+... ++| .+..++....-.|+-+.+++.+.+..+..++.-.... |..++..+. .....+.
T Consensus 177 ~G~f~L~lSl--LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLSL--LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHh--CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 3445555552 333 3445666666778999999999887765333332222 222222222 2456788
Q ss_pred HHHHHHhcC-CCCChhhHHHH-HHHHHhhCCHHHHHHHHHHHhccCCC----CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 644 AERVINSQH-IQARSDNWWAL-FSACAAHGNLRLGRIIAGLLLEREQD----KPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 644 A~~~~~~~~-~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
|.++++.+. .-|+...|.-. .+.+...|++++|++.++++...... ..-.+.-+++.+.-+++|++|.+.+.++
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 999999887 56777766544 44577899999999999987753332 2345778999999999999999999999
Q ss_pred HhC
Q 004733 718 KRT 720 (733)
Q Consensus 718 ~~~ 720 (733)
.+.
T Consensus 332 ~~~ 334 (468)
T PF10300_consen 332 LKE 334 (468)
T ss_pred Hhc
Confidence 874
No 275
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.85 E-value=12 Score=40.82 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004733 322 YTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVG 384 (733)
Q Consensus 322 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 384 (733)
....-...+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..|
T Consensus 98 ~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 98 ARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 3334445556666777887777633222 2344445666777778888877777777765444
No 276
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.83 E-value=0.93 Score=36.99 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=68.3
Q ss_pred CHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh--cCCCChhhHHHHHHHH
Q 004733 486 DEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNM--MIEKDTISWNALISAY 563 (733)
Q Consensus 486 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~l~~~~ 563 (733)
|..++..++.++++.|+++....+.+..- |+.++...- .+. +.. -..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 56788999999999999999988886443 333222100 000 111 1247888888999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSAC 599 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 599 (733)
+..|++..|+++.+...+.-+++-+...|..|+.-+
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999877654777778888888833
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.78 E-value=3.8 Score=34.86 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch-HHHHH-
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED-HLSCM- 631 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l- 631 (733)
.|..-+. +++.+..++|+.-|.++.+.| ...=+. ............|+...|...|+++-.. .-.|... -...|
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 4443333 356678899999999988876 322111 1122233456788899999999998765 2233222 22222
Q ss_pred -HHHhhhcCChHHHHHHHHhcCCCCCh---hhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 632 -LDLLGRAGYLDEAERVINSQHIQARS---DNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 632 -~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
...+...|.+++....++.+..+.++ ..-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33467788888888888776633222 2235566667788888888888888776
No 278
>PRK09687 putative lyase; Provisional
Probab=93.75 E-value=6.7 Score=37.60 Aligned_cols=125 Identities=14% Similarity=-0.026 Sum_probs=58.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHhhcCCCCCchHHH
Q 004733 551 KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG-LVDDGTRIFDSMVNDYGFIPAEDHLS 629 (733)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~p~~~~~~ 629 (733)
++..+-...+.++.+.++ +.++..+-.+.+ .+|...-...+.++...+ ..+.+...+..+.. .++..+-.
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~ 210 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRI 210 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHH
Confidence 344444444455555444 345555544443 233333333333443332 12344444444442 24455555
Q ss_pred HHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 004733 630 CMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQ 688 (733)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 688 (733)
..+.++.+.|+. .|...+-+....++ .....+.++...|+- +|+..++.+.+.+|
T Consensus 211 ~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 211 EAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 556666666653 34433333332232 223455556666663 56666666666666
No 279
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=5.5 Score=35.81 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=12.2
Q ss_pred HhhCCHHHHHHHHHHHhccCCCC
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
...+++.+|+.+++++....-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34555566666666555544333
No 280
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.45 E-value=8.8 Score=38.04 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=44.0
Q ss_pred hHHHHHhhccCChhHHHHHhccCCCC---Ch----hhHHHHHHHHhh---cCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 004733 127 TTFLSACTKMGHVDYACEVFDKMPDR---DL----PVYNAMITGCTE---NGYEDIGIGLFREMHKLDVRRDNYSFASVL 196 (733)
Q Consensus 127 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 196 (733)
..++-+|-...+++..+++++.+... ++ ..--...-++.| .|+.++|++++..+....-.+++.+|..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455677788888888888877643 11 112233345556 777888888877765555566666665544
Q ss_pred H
Q 004733 197 S 197 (733)
Q Consensus 197 ~ 197 (733)
+
T Consensus 225 R 225 (374)
T PF13281_consen 225 R 225 (374)
T ss_pred H
Confidence 3
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.37 E-value=26 Score=43.15 Aligned_cols=281 Identities=10% Similarity=0.028 Sum_probs=156.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhh-cCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCCh
Q 004733 425 NALISAYAKNERIKQAYQIFHN-MSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSL 503 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 503 (733)
-.+...|+..+++|....+... ...++ ...-|.-....|++..|...|+.+.+.+ ++...+++.++......+.+
T Consensus 1424 fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l 1499 (2382)
T KOG0890|consen 1424 FLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHL 1499 (2382)
T ss_pred HHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccch
Confidence 4455588888888887777763 33333 2234455677899999999999998875 33366777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH--HHHHHhcC--ChHHHHHHHHHH
Q 004733 504 RHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNAL--ISAYAQHG--EGKEAVSCFKAM 579 (733)
Q Consensus 504 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~ 579 (733)
+......+-.....-+.....++.=+.+--+.++++....... +.+..+|... +....+.. +.-.-....+.+
T Consensus 1500 ~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~ 1576 (2382)
T KOG0890|consen 1500 STEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENS 1576 (2382)
T ss_pred hHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 7766644444333222222233333444567777777777666 4455556544 22332222 211111233333
Q ss_pred HHcCCCCCC---------HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch------HHHHHHHHhhhcCChHHH
Q 004733 580 QDVGRIKPD---------QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED------HLSCMLDLLGRAGYLDEA 644 (733)
Q Consensus 580 ~~~~~~~p~---------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A 644 (733)
++.- +.|- ...|..++....-. +.+.-.+. ..+..++.. .|..-+..-....+..+-
T Consensus 1577 r~~~-i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~------l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ep 1648 (2382)
T KOG0890|consen 1577 RELV-IENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEE------LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEP 1648 (2382)
T ss_pred HHHh-hhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHH------hhccCccccccccchhHHHHHHHhchhHHHHhH
Confidence 3322 1211 02233333322111 11111111 113333322 222222111111122221
Q ss_pred HHHHHh----cCCCCC-----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 004733 645 ERVINS----QHIQAR-----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 645 ~~~~~~----~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 715 (733)
+--+++ ....|+ ...|....+..+..|.++.|...+-.+.+.. -+.++.-.+......|+...|+.+++
T Consensus 1649 ILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1649 ILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred HHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHH
Confidence 111111 112222 4478888999999999999999999998888 46677888899999999999999999
Q ss_pred HHHhCCC
Q 004733 716 LLKRTGV 722 (733)
Q Consensus 716 ~~~~~~~ 722 (733)
+-.+...
T Consensus 1727 ~~l~~~~ 1733 (2382)
T KOG0890|consen 1727 EILSKNF 1733 (2382)
T ss_pred HHHHhhc
Confidence 8886544
No 282
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=13 Score=39.67 Aligned_cols=50 Identities=8% Similarity=0.038 Sum_probs=25.2
Q ss_pred HHhcCCHHHHHHHHHhcccC--------CcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004733 333 YSSCGKIDEACMIFARLQEK--------DIVSWNTMISTYAQRNLGRSAILAYLEMQS 382 (733)
Q Consensus 333 ~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 382 (733)
...+|+.+-|..+++.=+.. +..-+...+.-....|+.+-...++..+..
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 33556666666655543321 222233444445556666666666655543
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.32 E-value=0.18 Score=29.81 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
..|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778889999999999999999999999985
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.29 E-value=3.2 Score=35.30 Aligned_cols=132 Identities=14% Similarity=0.035 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHH--
Q 004733 588 DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWAL-- 663 (733)
Q Consensus 588 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-- 663 (733)
+...|..-+.. .+.+..++|+.-|..+.+. |...-+. ............|+...|...|+++. ..|-|.....+
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34456555553 3566789999999999877 5433222 12233455678899999999999877 33334333222
Q ss_pred ---HHHHHhhCCHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 664 ---FSACAAHGNLRLGRIIAGLLLE-REQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 664 ---~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
...+..+|.++....-++.+.. .+|-....-..|+.+-++.|++.+|+..|+++....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 2335678988887766665443 345556677889999999999999999999987643
No 285
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=15 Score=39.50 Aligned_cols=55 Identities=18% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHhHhcCChHHHHHHHHhhhcCCCC---ccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 004733 230 ITMYFNCGNVVDACKVFEEAKGYVCD---HISYNVMMDGLASVGRVEEALIRFRDMLV 284 (733)
Q Consensus 230 i~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 284 (733)
++.+.+.+.+++|....+...+..|. ...+...|..+.-.|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 45566677777777777776665452 33466677777777777777766666654
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.98 E-value=0.16 Score=29.64 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 693 VYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
++..++.+|...|++++|.++|+++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45667777777777777777777776654
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.92 E-value=9.2 Score=36.77 Aligned_cols=117 Identities=10% Similarity=0.046 Sum_probs=53.8
Q ss_pred HhcCCHHHHHHHHhhcCC------CCh------hhHHHHHHHHHhCCCchHHHHHHHHHHHC--------CCCCCH----
Q 004733 432 AKNERIKQAYQIFHNMSP------RNI------ITWNTLINGFLLNGFPVQGLQHFSELLMS--------ELRPDE---- 487 (733)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~------~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~p~~---- 487 (733)
.+.|+.+.|...+.+... |+. ..|+.-...+.+..+++.|...+++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 356777777777776642 211 12333333333333777777666654332 122332
Q ss_pred -HhHHHHHHHhcccCChHH---HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004733 488 -YTLSVALSSCARISSLRH---GKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI 549 (733)
Q Consensus 488 -~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 549 (733)
.++..++.++...+..+. |..+++.+... +...+.++-.-++.+.+.++.+++.+.+.+|.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 234445555555444332 33333333221 11122233333444444555555555555554
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.81 E-value=0.32 Score=45.70 Aligned_cols=95 Identities=9% Similarity=-0.015 Sum_probs=64.9
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCC
Q 004733 596 LSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGN 672 (733)
Q Consensus 596 l~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 672 (733)
.+-|.++|.+++|+..|...... .| ++.++..-..+|.+..++..|..=.+... ..--...|..-..+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45678889999999999887744 55 66667677778888888877766555433 11112234444444445677
Q ss_pred HHHHHHHHHHHhccCCCCchH
Q 004733 673 LRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 673 ~~~A~~~~~~~~~~~p~~~~~ 693 (733)
..+|..-++.++++.|++...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 888888888899999986554
No 289
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.71 E-value=5.6 Score=37.07 Aligned_cols=59 Identities=14% Similarity=-0.124 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
+......|...|.+.+|.++.++++..+|-+...+..|...|...|+.-+|.+.++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455678899999999999999999999999999999999999999888888887664
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.69 E-value=1.3 Score=37.40 Aligned_cols=119 Identities=20% Similarity=0.103 Sum_probs=74.8
Q ss_pred HHHHHHHHH---HHhccCCHHHHHHHHHHhHhhcCCCCCchHH-HHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHH
Q 004733 589 QATFTAVLS---ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHL-SCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWAL 663 (733)
Q Consensus 589 ~~~~~~ll~---~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 663 (733)
..+...|+. .-...++.+++..++..+.- +.|..... ..-...+...|+|.+|..+|+.+. ..|....-..|
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 344555555 44577899999999999984 46765433 334566789999999999999988 44555555666
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHH
Q 004733 664 FSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 664 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
+..|.....-..=....+++.+..++ +.+. .|...+....+...|..
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d-~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGAD-PDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCC-hHHH-HHHHHHHHhccccchhh
Confidence 66665544333334455556665553 3333 34444555555555544
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.55 E-value=0.95 Score=38.17 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=67.6
Q ss_pred HHHHHHHH---hhhcCChHHHHHHHHhcC-CCCChhhHHHHH-HHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 004733 627 HLSCMLDL---LGRAGYLDEAERVINSQH-IQARSDNWWALF-SACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIY 701 (733)
Q Consensus 627 ~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 701 (733)
+.+.|++. -.+.++.+++..+++.+. ..|.......+- +.+...|++.+|+++++.+.+..|..+..-..++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44444444 356788999999998887 677766655443 4477899999999999999888898888888888888
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 004733 702 AAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~~ 721 (733)
...|+.+ =..+-+++.+.+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~ 107 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESG 107 (160)
T ss_pred HHcCChH-HHHHHHHHHhcC
Confidence 8888753 122334444444
No 292
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.51 E-value=0.21 Score=27.34 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHH
Q 004733 692 SVYVLLSNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~ 715 (733)
.....|+.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999998876
No 293
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.28 E-value=0.89 Score=38.99 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=14.0
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhc
Q 004733 676 GRIIAGLLLEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 676 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 704 (733)
|+.-+++++.++|+...++..++++|...
T Consensus 54 AisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 54 AISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44445555555555555555555555543
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.23 E-value=0.78 Score=37.90 Aligned_cols=72 Identities=18% Similarity=0.068 Sum_probs=51.5
Q ss_pred hhcCChHHHHHHHHhcC-CCCChhhHHHHH-HHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCCh
Q 004733 636 GRAGYLDEAERVINSQH-IQARSDNWWALF-SACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLW 707 (733)
Q Consensus 636 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 707 (733)
...++.+++..+++.+. ..|+..-...+- +.+...|++.+|.+++..+.+..|..+..-..++.++...|+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 34777888888887776 666655544433 3466788888888888888877777777777777777777764
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.19 E-value=7.5 Score=34.01 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH-----
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTA--VLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHL----- 628 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~--ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~----- 628 (733)
|..++.... .+.+ +.....+++.... -+....++.. +...+...+++++|...++..... |.-..+
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n-~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~ 129 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQAN-GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHH
Confidence 444444433 3333 5555556665532 1112222222 233667888888888888877643 222222
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcCCCCChhh--HHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQHIQARSDN--WWALFSACAAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
-.|.......|.+++|+..++... .++-.. ...-..++...|+-++|+..|+++++.++++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 235566778888888888888765 332222 2334456777888888888888888876443
No 296
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.16 E-value=17 Score=37.92 Aligned_cols=129 Identities=11% Similarity=0.073 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh--ccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 004733 154 LPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC--DAGLLEFGRQLHSLVTKSGFSCLVSVVNALIT 231 (733)
Q Consensus 154 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 231 (733)
...|..+|.---.....+.+...+..++.. .|-..-|-.-..-+ +.|..+.+..+|++.++ +++.+...|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 345666665544444556666677777642 45555554444444 77888888888888776 45666777777666
Q ss_pred HhHh-cCChHHHHHHHHhhhcC----CCCccchHHHHHHHHhcCChHHHHHHHHHHHHc
Q 004733 232 MYFN-CGNVVDACKVFEEAKGY----VCDHISYNVMMDGLASVGRVEEALIRFRDMLVA 285 (733)
Q Consensus 232 ~~~~-~~~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 285 (733)
.++. .|+.+...+.|+..... -.+...|...|..-..++++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5553 47777777788775421 124556777777777888888888888888764
No 297
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.13 E-value=2.8 Score=36.52 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=58.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-hHHHHHH
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA------TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAE-DHLSCML 632 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~ 632 (733)
..-+...|++++|..-|..+++. .|... .|..-..++.+.+.++.|+.-..+.++. .|+- ..+..-.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRA 175 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRA 175 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHH
Confidence 34466788888888888888874 34322 2333344667788888888777777644 4431 2333335
Q ss_pred HHhhhcCChHHHHHHHHhcC-CCCC
Q 004733 633 DLLGRAGYLDEAERVINSQH-IQAR 656 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~-~~~~ 656 (733)
.+|.+..++++|++=+.++. ..|.
T Consensus 176 eayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 67777888888887777765 4444
No 298
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.04 E-value=5.5 Score=32.17 Aligned_cols=63 Identities=6% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGF 621 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 621 (733)
....+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445566667777777777777776544 667777777777888888888888888877776 54
No 299
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.93 E-value=0.42 Score=28.11 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 692 SVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988763
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.85 E-value=1.6 Score=43.39 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=70.8
Q ss_pred HHhcCChHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCCh
Q 004733 563 YAQHGEGKEAVS-CFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYL 641 (733)
Q Consensus 563 ~~~~~~~~~A~~-~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 641 (733)
-...|+.-.|-+ ++..++... -.|+....... .....|+++.+.+.+...... +-....+..+++...-+.|++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~-~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQ-QDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCC-CCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhH
Confidence 344566665544 444444433 34444433332 345667777777777766543 333455666777777777777
Q ss_pred HHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 642 DEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 642 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
++|...-..|. .-.++.............|-++++...++++..++|+..
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 77777766655 122333333333344556667777777777777775443
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.75 E-value=0.96 Score=42.47 Aligned_cols=58 Identities=22% Similarity=0.157 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 662 ALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 662 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.++..+...|+++.+...++++...+|-+-..|..+..+|...|+...|+..|+++.+
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555555554443
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.70 E-value=2.2 Score=37.68 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=48.4
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHHHHHHHHHhhCCHHHHH
Q 004733 601 HAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWWALFSACAAHGNLRLGR 677 (733)
Q Consensus 601 ~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~ 677 (733)
..|-+.-|+--|.+.. .+.|+ +.+||.+.--+...|+++.|.+.|+... ..|.-. ....-.-++.--|+++.|.
T Consensus 77 SlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 3444555555555554 34555 3466666666667777777777776644 333321 2222222234456677777
Q ss_pred HHHHHHhccCCCCc
Q 004733 678 IIAGLLLEREQDKP 691 (733)
Q Consensus 678 ~~~~~~~~~~p~~~ 691 (733)
+-+.+-.+.+|+||
T Consensus 154 ~d~~~fYQ~D~~DP 167 (297)
T COG4785 154 DDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHhcCCCCh
Confidence 77666666777665
No 303
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.49 E-value=1.8 Score=40.76 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCchHHH
Q 004733 554 ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVN----DYGFIPAEDHLS 629 (733)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~p~~~~~~ 629 (733)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ ..|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 356677888888889999999999998865 55778899999999999999999998888765 247888777766
Q ss_pred HHHHH
Q 004733 630 CMLDL 634 (733)
Q Consensus 630 ~l~~~ 634 (733)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
No 304
>PRK12798 chemotaxis protein; Reviewed
Probab=91.32 E-value=17 Score=36.27 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=121.7
Q ss_pred cCCHHHHHHHHHhcCC----CChhhHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCCH
Q 004733 535 CGDLDCSLRVFNMMIE----KDTISWNALISAY-AQHGEGKEAVSCFKAMQDVGRIKPDQA----TFTAVLSACSHAGLV 605 (733)
Q Consensus 535 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~ 605 (733)
.|+.++|.+.+..+.. +....|-.|+.+- ....++.+|+++|+..+- .-|-.. ...--+-.....|+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 5899999999998863 3445666666654 456699999999999876 446543 344444566789999
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHH-HHHHhhhcC---ChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHH
Q 004733 606 DDGTRIFDSMVNDYGFIPAEDHLSC-MLDLLGRAG---YLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAG 681 (733)
Q Consensus 606 ~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 681 (733)
+++..+-.+...+|...|-..-|.. +...+.+.+ +.+.-..++..|.-.-....|..+.+.-...|+.+.|....+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999888888666666554433 333444333 344444555555533345578888888999999999999999
Q ss_pred HHhccCCCCchHHHHHHHHHH-----hcCChHHHHHHHHHHHh
Q 004733 682 LLLEREQDKPSVYVLLSNIYA-----AAGLWEEAANIRELLKR 719 (733)
Q Consensus 682 ~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 719 (733)
++..+.+.+ ..-...+..|. -..++++|.+.+..+-.
T Consensus 282 ~A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 282 RALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 999987432 22223333333 34567777777765543
No 305
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.28 E-value=0.36 Score=28.99 Aligned_cols=26 Identities=12% Similarity=-0.086 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
+..+...|.+.|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677778888888888888888554
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.25 E-value=0.18 Score=42.80 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=55.9
Q ss_pred HHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHH
Q 004733 63 TLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYA 142 (733)
Q Consensus 63 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 142 (733)
++..+.+.+.+......++.....+...+....+.++..|++.++.+...++++.... .-...++..|.+.|-++.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666777788888888887777667788888888888888777787777774332 3334455555566666666
Q ss_pred HHHhccCC
Q 004733 143 CEVFDKMP 150 (733)
Q Consensus 143 ~~~~~~~~ 150 (733)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66555544
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.14 E-value=4.5 Score=41.57 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=76.5
Q ss_pred chhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChh
Q 004733 92 PHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYED 171 (733)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (733)
..-.+.++..+-+.|-.+.|.++.. |+. .-.....+.|+++.|.++.++.. +...|..|.....++|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~-----D~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVT-----DPD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcC-----ChH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 3446666666777777777766654 332 22344567888888888877766 4557888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHh
Q 004733 172 IGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEE 248 (733)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 248 (733)
-|.+.|.+..+ |..++-.+ ..|+.+.-.++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887654 33444344 55555555555555544431 22233333344555555555444
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.13 E-value=15 Score=35.34 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=26.2
Q ss_pred hccCChhHHHHHhccCCC------CChh------hHHHHHHHHhhcCChhHHHHHHHHHHH
Q 004733 134 TKMGHVDYACEVFDKMPD------RDLP------VYNAMITGCTENGYEDIGIGLFREMHK 182 (733)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~------~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~ 182 (733)
.+.|+.+.|..++.+... |+.. .|+.-...+.+..+++.|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 466777777777776652 1111 233333333333367777776666533
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.87 E-value=0.51 Score=29.78 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 695 VLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
..|+.+|...|+.+.|++++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999998654
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.84 E-value=0.48 Score=27.87 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
.|..+...+...|++++|...++++.+.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666777888999999999999999998884
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.63 E-value=21 Score=36.31 Aligned_cols=170 Identities=11% Similarity=0.117 Sum_probs=90.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHH-HHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIE--KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATF-TAVLS 597 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~-~~ll~ 597 (733)
|....-+++..++...++.-.+.+..+|.. .+-..|..++++|... ..+.-..+|+++.+.. -|.... ..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---chhHHHHHHHHH
Confidence 333444556666666666666666666652 3445566667777666 5566677777776633 343333 33333
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCC------chHHHHHHHHhhhcCChHHHHHHHHhcC----CCCChhhHHHHHHHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPA------EDHLSCMLDLLGRAGYLDEAERVINSQH----IQARSDNWWALFSAC 667 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~ 667 (733)
.|.+ ++.+.+..+|.++..+ +.|. .+.|..+...- ..+.+....+..++. ...-...+..+..-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4433 6667777777776654 3332 11233222211 334555555555444 112222344444556
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
....++.+|++++...++.+..|..+-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 66667777777777777766666555444443
No 312
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.46 E-value=11 Score=32.54 Aligned_cols=56 Identities=5% Similarity=-0.021 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLM 480 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 480 (733)
..+++.+...|++-+|.++.+....-+......++.+-.+.++...=..+++-...
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566777777777777777765444444445555555555555544444444443
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.16 E-value=0.62 Score=28.97 Aligned_cols=28 Identities=36% Similarity=0.369 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 692 SVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.++..|+.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988765
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.07 E-value=12 Score=37.70 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=56.3
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 655 ARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQ----DKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 655 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
....+|..++..+.+.|.++.|...+.++....+ ..+.+...-+..+...|+..+|...+++......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3445788999999999999999999999998652 2466777778999999999999999998887333
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.04 E-value=0.62 Score=27.04 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
+..+..++.+.|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456677888899999999999999988874
No 316
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=15 Score=33.24 Aligned_cols=134 Identities=8% Similarity=0.091 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHH-------HHHHHHHHhcc-CCHHHHHHHHHHhHhhcCCCCCch
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQAT-------FTAVLSACSHA-GLVDDGTRIFDSMVNDYGFIPAED 626 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~-------~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~~p~~~ 626 (733)
+|.-...+|.+ .++++|...++..++ +-.+.-- +..+...|... .++++|+..|+..-+-+...-...
T Consensus 76 ~YveA~~cykk-~~~~eAv~cL~~aie---Iyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 76 TYVEAANCYKK-VDPEEAVNCLEKAIE---IYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHhhc-cChHHHHHHHHHHHH---HHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 33333343433 366666666665554 2222222 22344445433 577888888888766543333322
Q ss_pred HH----HHHHHHhhhcCChHHHHHHHHhcC-CCCC-------hhhHHHHHHHHHh-hCCHHHHHHHHHHHhccCCCCch
Q 004733 627 HL----SCMLDLLGRAGYLDEAERVINSQH-IQAR-------SDNWWALFSACAA-HGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 627 ~~----~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-------~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
+- -.+...-...+++.+|+++++++. ...+ ...|..-...|.- ..|.-.+...+++..+++|.-..
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 22 223344466788999999998765 1111 1112111222433 37888899999999999997543
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.81 E-value=35 Score=37.55 Aligned_cols=193 Identities=16% Similarity=0.076 Sum_probs=106.1
Q ss_pred HhcCCHHHHHHHHHhcC----CCCh-------hhHHHHHH-HHHhcCChHHHHHHHHHHHHcC---CCCCCHHHHHHHHH
Q 004733 533 AKCGDLDCSLRVFNMMI----EKDT-------ISWNALIS-AYAQHGEGKEAVSCFKAMQDVG---RIKPDQATFTAVLS 597 (733)
Q Consensus 533 ~~~~~~~~A~~~~~~~~----~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~---~~~p~~~~~~~ll~ 597 (733)
....++++|..++.++. .|+. ..|+.+-. .....|++++|..+.+.....- ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777776653 2221 13444432 2335678899988888776632 01223345666666
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHH-----HHHhhhcCChH--HHHHHHHhcC-----CCCC----hhhHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCM-----LDLLGRAGYLD--EAERVINSQH-----IQAR----SDNWW 661 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~--~A~~~~~~~~-----~~~~----~~~~~ 661 (733)
+..-.|++++|..+.++..+. .-.-+...+..+ ...+..+|+.. +....+.... ..|. .....
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777889999998888777655 333344433332 23456777433 2223333222 2222 12233
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhc----cCCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCccc
Q 004733 662 ALFSACAAHGNLRLGRIIAGLLLE----REQDKPSV---YVLLSNIYAAAGLWEEAANIRELLKRTGVIKQPGCS 729 (733)
Q Consensus 662 ~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 729 (733)
.+++++.+ .+.+..-.....+ ..|..-.. +..|+.++...|+.++|...+.++..-.....+..-
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 34444333 3444433333333 33333222 346788899999999999999988776554444333
No 318
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.75 E-value=3.5 Score=39.59 Aligned_cols=217 Identities=13% Similarity=0.072 Sum_probs=119.4
Q ss_pred cccCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHh----cCC-CC----hhhHHHHHHHHHhc
Q 004733 498 ARISSLRHGKQIHGYVLKN--NLISKMSLGNAMITLYAKCGDLDCSLRVFNM----MIE-KD----TISWNALISAYAQH 566 (733)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~-~~----~~~~~~l~~~~~~~ 566 (733)
....+.++++..|..-..+ +...-..++..+.++.++.|.+++++..--. ..+ .| ...|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777766655432 2222334556666777777777766543221 111 11 22455556666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC----CchHHHHHHHHhhhcC
Q 004733 567 GEGKEAVSCFKAMQDVGRIKPDQ---ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP----AEDHLSCMLDLLGRAG 639 (733)
Q Consensus 567 ~~~~~A~~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g 639 (733)
-++.+++.+-+.-.......|.. .....+..++.-.+.++++++.|+...+-..-.. ...++..|...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 66666666665554432133321 1233344566666777888888877765311111 1335667777778888
Q ss_pred ChHHHHHHHHhcC-----CC-CC-hhhH-----HHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH-----------HHH
Q 004733 640 YLDEAERVINSQH-----IQ-AR-SDNW-----WALFSACAAHGNLRLGRIIAGLLLEREQDKPSV-----------YVL 696 (733)
Q Consensus 640 ~~~~A~~~~~~~~-----~~-~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~ 696 (733)
++++|..+..+.. .. .| ..-| ..+.-++...|.+..|.+..+++.+ ... ...
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k-----lal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK-----LALQHGDRALQARCLLC 251 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH-----HHHHhCChHHHHHHHHH
Confidence 8877776655432 11 11 1112 2344456677777777777776532 111 235
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 004733 697 LSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++.+|-..|+.+.|..-|++...
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHH
Confidence 66777777887777777776654
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.66 E-value=2.4 Score=37.36 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=53.3
Q ss_pred hHHHHHHHHhcCCCCC--hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC----CchHHHHHHHHHHhcCChHHHH
Q 004733 641 LDEAERVINSQHIQAR--SDNWWALFSACAAHGNLRLGRIIAGLLLEREQD----KPSVYVLLSNIYAAAGLWEEAA 711 (733)
Q Consensus 641 ~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 711 (733)
-++|.+.|-.+...|. .+.....+..|....|.++++.++-+++++.+. ++.++..|+.+|.+.|++++|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3667777777664443 334455566677788999999999999997643 5788999999999999998874
No 320
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.62 E-value=10 Score=36.54 Aligned_cols=94 Identities=13% Similarity=0.298 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCC-------CChhhHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCCHH-H-HHHHHHHHhccCC
Q 004733 538 LDCSLRVFNMMIE-------KDTISWNALISAYAQHGE----GKEAVSCFKAMQDVGRIKPDQA-T-FTAVLSACSHAGL 604 (733)
Q Consensus 538 ~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~p~~~-~-~~~ll~~~~~~~~ 604 (733)
..+|..+|+.|.+ ++-.++..++.. ..++ .+.+..+|+.+.+.| +..+.. - ...++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~-f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAG-FKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHhccccch
Confidence 3456677777763 233344444433 2222 356678888888888 666543 2 3333333322222
Q ss_pred --HHHHHHHHHHhHhhcCCCCCchHHHHHHHHh
Q 004733 605 --VDDGTRIFDSMVNDYGFIPAEDHLSCMLDLL 635 (733)
Q Consensus 605 --~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 635 (733)
...+.++++.+.+. |+++....|..+.-..
T Consensus 196 ~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 196 EKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 45788889999888 9888888777665443
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.62 E-value=2.9 Score=34.70 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=53.3
Q ss_pred HHHHHHHH---HHhccCCHHHHHHHHHHhHhhcCCCCCchHH-HHHHHHhhhcCChHHHHHHHHhcCCCC-ChhhHHHHH
Q 004733 590 ATFTAVLS---ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHL-SCMLDLLGRAGYLDEAERVINSQHIQA-RSDNWWALF 664 (733)
Q Consensus 590 ~~~~~ll~---~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~ 664 (733)
...+.|+. .-...++.+++..+++.|.- +.|+..-. ..-...+...|+|.+|..+|+.+...+ ..+.-..|.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 44455555 33468899999999999984 46664422 233556789999999999999988444 434344454
Q ss_pred HHHH-hhCCH
Q 004733 665 SACA-AHGNL 673 (733)
Q Consensus 665 ~~~~-~~g~~ 673 (733)
..|. ..||.
T Consensus 85 A~CL~al~Dp 94 (153)
T TIGR02561 85 ALCLNAKGDA 94 (153)
T ss_pred HHHHHhcCCh
Confidence 4444 34443
No 322
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.49 E-value=1.4 Score=33.36 Aligned_cols=49 Identities=24% Similarity=0.213 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--chHHHHHHHHHHhcCC
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLEREQDK--PSVYVLLSNIYAAAGL 706 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 706 (733)
..-..+...+...|+++.|...+-.+++.+|+. ...-..|..++...|.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344455555555566666655555555555433 4444555555555554
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.69 E-value=3.2 Score=37.77 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhhCCHH-------HHHHHHHHHhccC--CC----CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCC
Q 004733 659 NWWALFSACAAHGNLR-------LGRIIAGLLLERE--QD----KPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQ 725 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 725 (733)
.+..+.+.|...|+.+ .|...++++.+.. |. +..+.+.+|.++.+.|++++|.+.|.++...+-.+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 4556667777777643 4555555555533 22 246788999999999999999999999987655443
No 324
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=19 Score=32.78 Aligned_cols=170 Identities=8% Similarity=-0.022 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 004733 526 NAMITLYAKCGDLDCSLRVFNMMI---EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHA 602 (733)
Q Consensus 526 ~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 602 (733)
.--..+|-...++++|..-+.+.. +.+...|. ..+.++.|.-+.+++.+ +.--...|+-....|...
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~k---lsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSK---LSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHh
Confidence 334455556666776666555543 22222222 22345666666666655 212223455666678888
Q ss_pred CCHHHHHHHHHHhHhh-cCCCCCc--hHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHH
Q 004733 603 GLVDDGTRIFDSMVND-YGFIPAE--DHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRII 679 (733)
Q Consensus 603 ~~~~~A~~~~~~~~~~-~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 679 (733)
|.++.|-..+++.-+. ....|+. ..|..-.......++...|.+++ ..+...+.+...+++|-..
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~------------gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY------------GKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH------------HHhhhHhhhhHHhhHHHHH
Confidence 8888877777665432 1233431 12332233333333333333333 3344556666777666555
Q ss_pred HHHHhc------cCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 680 AGLLLE------REQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 680 ~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
+.+-.. ..|+.-..+...+.+|....++..|.+.+++=
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 544222 22333445666777788888999999988753
No 325
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=1.9 Score=38.70 Aligned_cols=78 Identities=9% Similarity=-0.026 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhcC-CCCChhhH-HHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 640 YLDEAERVINSQH-IQARSDNW-WALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 640 ~~~~A~~~~~~~~-~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
+++.|..-+.+.. ..|...+| ..-+.++.+..+++.+..-..+++++.|+....++.|+........+++|+..+.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3444444443322 45554433 333344445566666666666666666666666666666666666666666666655
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.00 E-value=10 Score=32.87 Aligned_cols=43 Identities=7% Similarity=0.086 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 673 LRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 673 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
|++|...++++.+.+|++......|-.+ ++|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence 4557777888888888876655555432 245555555555544
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.93 E-value=10 Score=33.37 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHh
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA--TFTAVLSACSHAGLVDDGTRIFDSMVN 617 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~ 617 (733)
.+..+..-|.+.|+.+.|++.|.++.+.. ..|... .+..++..+...+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455556666666666666666665544 333322 244555555556666666665555543
No 328
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=5.5 Score=36.06 Aligned_cols=62 Identities=10% Similarity=-0.105 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
+..+..++...|++-+++......+...|.+..+|+.-+.++...=+.++|..-|.+..+..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33455566678888888888888888888888888888888888888888888887777644
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.49 E-value=10 Score=28.87 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=46.0
Q ss_pred HHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 004733 130 LSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFAS 194 (733)
Q Consensus 130 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (733)
+..+..+|++++|..+.+...-||...|-+|.. .+.|-.+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 356778999999999999999999999887766 35666677777777777766 344444433
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.13 E-value=2.4 Score=40.16 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhc
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKP-DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRA 638 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (733)
..-|.++|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-....+.. . ..-...|+.-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHH
Confidence 4568899999999999999888 557 8888888888999999998888877776643 0 00112233333333344
Q ss_pred CChHHHHHHHHhcC-CCCChh
Q 004733 639 GYLDEAERVINSQH-IQARSD 658 (733)
Q Consensus 639 g~~~~A~~~~~~~~-~~~~~~ 658 (733)
|...+|.+=++... ..|...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 55666665555433 566643
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=11 Score=39.05 Aligned_cols=24 Identities=21% Similarity=0.016 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHh
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
-|..|.++..+.|++..|.+.|.+
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHh
Confidence 344444444444444444444443
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.54 E-value=3.1 Score=27.64 Aligned_cols=36 Identities=25% Similarity=0.154 Sum_probs=26.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHH
Q 004733 662 ALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 662 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
.+.-++.+.|++++|.+..+.+++.+|++..+..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455667889999999999999999999987765443
No 333
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.50 E-value=54 Score=35.80 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=40.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHh-CCccchhHHHHHHHHHHh---cCC
Q 004733 361 ISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFIN-GIITNIQVSNALISAYAK---NER 436 (733)
Q Consensus 361 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---~g~ 436 (733)
...+.-.|+++.|++.+-. ..+...|.+.+...+..++-+.........+... .-.|.+.-+..++..|.+ ..+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 4455668888888888777 3345566777777776666533332222222221 111222445667777765 456
Q ss_pred HHHHHHHHhhcC
Q 004733 437 IKQAYQIFHNMS 448 (733)
Q Consensus 437 ~~~A~~~~~~~~ 448 (733)
+..|.+.|--+.
T Consensus 343 ~~~Al~Y~~li~ 354 (613)
T PF04097_consen 343 PREALQYLYLIC 354 (613)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH
Confidence 777777776665
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.98 E-value=3.3 Score=36.69 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHh-cCCCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch---HHHHHHH
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINS-QHIQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS---VYVLLSN 699 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~ 699 (733)
+.+..+..+.+.+++++|+...+. +..+|. ...-..++..++..|++++|..-++.+-++.|++.. .|.+++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 445556778889999999987764 444554 445667888899999999999999999999988653 4555554
No 335
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.95 E-value=35 Score=33.04 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCC-------CChhhHHHHHHHHHhCCC----chHHHHHHHHHHHCCCCCCH--HhHHHHHHHhcccCC-
Q 004733 437 IKQAYQIFHNMSP-------RNIITWNTLINGFLLNGF----PVQGLQHFSELLMSELRPDE--YTLSVALSSCARISS- 502 (733)
Q Consensus 437 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~- 502 (733)
...|..+++.|++ ++..++..++.. ..++ .+.+..+|+.+...|+..+. ...+.++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456667777652 233444444433 2222 24566677777777765443 334444444433332
Q ss_pred -hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004733 503 -LRHGKQIHGYVLKNNLISKMSLGNAMIT 530 (733)
Q Consensus 503 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 530 (733)
+.++.++++.+.+.|+++....|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3466777888888888877777665443
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.84 E-value=24 Score=33.19 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=90.4
Q ss_pred hhHHHHHhccCCCC--ChhhHHHHHHHHhhcCChhHHHHHHHHH-------HH-------------------cCCCCChh
Q 004733 139 VDYACEVFDKMPDR--DLPVYNAMITGCTENGYEDIGIGLFREM-------HK-------------------LDVRRDNY 190 (733)
Q Consensus 139 ~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m-------~~-------------------~~~~~~~~ 190 (733)
..+|+++|.-+.+. ..++-+.++..+-...+..+|...|... +. .++.-|..
T Consensus 149 s~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~ 228 (361)
T COG3947 149 SRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQ 228 (361)
T ss_pred hhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHH
Confidence 34566666555422 1334445555555555555554443221 11 23455667
Q ss_pred hHHHHHHhh--ccCchHHHHHHHHHHHHhCCC----------------CchHHHHHHHHHhHhcCChHHHHHHHHhhhcC
Q 004733 191 SFASVLSVC--DAGLLEFGRQLHSLVTKSGFS----------------CLVSVVNALITMYFNCGNVVDACKVFEEAKGY 252 (733)
Q Consensus 191 ~~~~ll~~~--~~~~~~~a~~~~~~~~~~~~~----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 252 (733)
-|.+.++.. .+-.++++.++.......=++ .-..+++.....|..+|.+.+|.++-+....+
T Consensus 229 e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl 308 (361)
T COG3947 229 EYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL 308 (361)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Confidence 777777666 445566776666554221110 01223444556788899999999999988776
Q ss_pred CC-CccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 004733 253 VC-DHISYNVMMDGLASVGRVEEALIRFRDMLV 284 (733)
Q Consensus 253 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 284 (733)
.| +...|-.++..+...|+--++..-++.+.+
T Consensus 309 dpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 309 DPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 66 777888899999999998888888887754
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.74 E-value=24 Score=31.04 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=74.1
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHH--Hhh-ccCchHHHHHHHHHHHHhCCCCc--hHHHHHHH
Q 004733 156 VYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVL--SVC-DAGLLEFGRQLHSLVTKSGFSCL--VSVVNALI 230 (733)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--~~~-~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li 230 (733)
.|..++.... .+.+ +.....+.+...+......++..+. ... ..|+++.|..-++......-..+ ..+-..|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3555555443 2223 4444555555432111222222222 122 67777777777776664321111 12223455
Q ss_pred HHhHhcCChHHHHHHHHhhhcCCCCccc--hHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004733 231 TMYFNCGNVVDACKVFEEAKGYVCDHIS--YNVMMDGLASVGRVEEALIRFRDMLVAS 286 (733)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~ 286 (733)
......|.+++|+..++...+ ++... ...-.+++...|+-++|..-|......+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 667788999999999988776 43332 3444578899999999999999988875
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.47 E-value=20 Score=32.04 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHH
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCM 631 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l 631 (733)
.+..++.+.+.+...+++...++-++.. +.|..+-..++..++-.|+|++|..-++-.-+. .|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l---~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL---SPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhc---CcccchHHHHHHHH
Confidence 3445666777788888888887776643 334455667778888888888888777766532 333 3455555
Q ss_pred HHHhhhcCChHHHH-HHHHh--cC---CCCChhhHHHHHHHHH--hhCCHHHHHHHHHHHhccCCCCc
Q 004733 632 LDLLGRAGYLDEAE-RVINS--QH---IQARSDNWWALFSACA--AHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 632 ~~~~~~~g~~~~A~-~~~~~--~~---~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
+.+- .+. ++|.- .+ ..|.+.-...+..+.. .-|.-+.+..+-+.+.+..|..+
T Consensus 79 ir~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRCE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 5432 222 23332 11 2233333344444433 23345556666667777666544
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.39 E-value=31 Score=31.92 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=44.3
Q ss_pred hcCCHHHHHHHHhhcC----CCCh---hhHHHHHHHHHhCCCchHHHHHHHHHHHC---CC--CCCHHhHHHHHHHhccc
Q 004733 433 KNERIKQAYQIFHNMS----PRNI---ITWNTLINGFLLNGFPVQGLQHFSELLMS---EL--RPDEYTLSVALSSCARI 500 (733)
Q Consensus 433 ~~g~~~~A~~~~~~~~----~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~ 500 (733)
+..++++|+.-|..+. +... .+...++..+.+.+++++.++.+.+|..- .+ .-+..+.+.++.-.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3456778888777664 1222 24455677777788888877777776531 11 12334455555555544
Q ss_pred CChHHHHHHHH
Q 004733 501 SSLRHGKQIHG 511 (733)
Q Consensus 501 ~~~~~a~~~~~ 511 (733)
.+.+.-.++++
T Consensus 119 ~~m~LLQ~FYe 129 (440)
T KOG1464|consen 119 KNMDLLQEFYE 129 (440)
T ss_pred hhhHHHHHHHH
Confidence 44444444443
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.30 E-value=63 Score=35.42 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccC---CCCch-HHH-----HHHHHHHhcCChHHHHHHHHHHHh
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLERE---QDKPS-VYV-----LLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~-~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
..++..-.-.|+..+.......+.... |+... .|. .+...|...|+.++|....++...
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344444333677776555555555432 33233 332 445567788999999998877643
No 341
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.29 E-value=7 Score=34.38 Aligned_cols=95 Identities=8% Similarity=0.053 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHhhhcCChHHHHHHHHhcC---CCCChhhHH---
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA--EDHLSCMLDLLGRAGYLDEAERVINSQH---IQARSDNWW--- 661 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~--- 661 (733)
..+..+...|.+.|+.+.|.+.|.++.+. ...|. .+.+-.++......|++..+...+.+.. ..+......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35777888899999999999999998776 44444 4456677888888889888888887655 121111111
Q ss_pred HHHHH--HHhhCCHHHHHHHHHHHhc
Q 004733 662 ALFSA--CAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 662 ~l~~~--~~~~g~~~~A~~~~~~~~~ 685 (733)
....+ +...|+|..|-+.+-.+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 11122 3456777776666555443
No 342
>PRK10941 hypothetical protein; Provisional
Probab=85.04 E-value=5.1 Score=37.86 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=34.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
+-.+|.+.++++.|.+..+.++.+.|+++.-+.--|.+|...|.+..|..=++...+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3344556666666666666666666666666666666666666666666655555443
No 343
>PRK09687 putative lyase; Provisional
Probab=84.46 E-value=40 Score=32.41 Aligned_cols=59 Identities=7% Similarity=-0.034 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004733 322 YTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSV 383 (733)
Q Consensus 322 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 383 (733)
+..+....+.++.+.|+..-...+++.+..++ .....+.++...|.. +|+..+..+...
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 34444555666777777443333444443343 234567777777775 577777777663
No 344
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.24 E-value=0.66 Score=43.98 Aligned_cols=85 Identities=18% Similarity=0.085 Sum_probs=43.1
Q ss_pred cCChHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 004733 638 AGYLDEAERVINSQH-IQARS-DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 715 (733)
.|.++.|++.+.... ..|.. ..+..-..++.+.+....|++-+..+.+++|+...-|-.-+.+....|+|++|.+.|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 344555555544433 22222 2223333344455555555555555556666655555555555555566666666655
Q ss_pred HHHhCCC
Q 004733 716 LLKRTGV 722 (733)
Q Consensus 716 ~~~~~~~ 722 (733)
...+.++
T Consensus 207 ~a~kld~ 213 (377)
T KOG1308|consen 207 LACKLDY 213 (377)
T ss_pred HHHhccc
Confidence 5555444
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.06 E-value=7.2 Score=29.86 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 004733 571 EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLD 633 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 633 (733)
+..+-++.+.... +.|++....+.+.+|.+.+++..|.++++.+..+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~D-lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYD-LVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSS-B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccc-cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 4445556666666 7788888888888888888888888888888766 2333336655554
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.94 E-value=5.2 Score=37.67 Aligned_cols=97 Identities=8% Similarity=-0.010 Sum_probs=64.1
Q ss_pred CCcchhhHHHHHhhccCChhHHHHHhccCCC-CCh-----hhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 004733 121 PDVYSWTTFLSACTKMGHVDYACEVFDKMPD-RDL-----PVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFAS 194 (733)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (733)
.+..+...++..-....++++++..+=++.+ ++. .+-.+.++.| -.-++++++.++..-.+.|+-||..+++.
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence 3444445555555555666666666555442 111 1112233333 33467789999988899999999999999
Q ss_pred HHHhh-ccCchHHHHHHHHHHHHhC
Q 004733 195 VLSVC-DAGLLEFGRQLHSLVTKSG 218 (733)
Q Consensus 195 ll~~~-~~~~~~~a~~~~~~~~~~~ 218 (733)
+|..+ +.+++..|..+.-+|....
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99888 8899988888887777654
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.93 E-value=37 Score=36.55 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=74.4
Q ss_pred hcCChHHHHHHHHHHHH-------cCCCCCCHHHHHHHHHHHhcc----C-CHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 004733 565 QHGEGKEAVSCFKAMQD-------VGRIKPDQATFTAVLSACSHA----G-LVDDGTRIFDSMVNDYGFIPAEDHLSCML 632 (733)
Q Consensus 565 ~~~~~~~A~~~~~~~~~-------~~~~~p~~~~~~~ll~~~~~~----~-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 632 (733)
...+.+.|+.+|+.+.+ .| ++.....+..+|.+. . +.+.|..++....+. | .|+...+ +.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~--lg 332 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYL--LG 332 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHH--HH
Confidence 34456666666666544 33 222333444444432 2 455566666666554 3 2222222 22
Q ss_pred HHhhh---cCChHHHHHHHHhcCCCCChhhHHHHHHHHH----hhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc-
Q 004733 633 DLLGR---AGYLDEAERVINSQHIQARSDNWWALFSACA----AHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA- 704 (733)
Q Consensus 633 ~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~- 704 (733)
.++.. ..+...|.++|...........+..+..+|. ...+.+.|...++++.+.++ +.+...++..+.--
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHcc
Confidence 22222 2345667777766554444444333333332 23367777777777777772 33333333322221
Q ss_pred CChHHHHHHHHHHHhCCCcC
Q 004733 705 GLWEEAANIRELLKRTGVIK 724 (733)
Q Consensus 705 g~~~~A~~~~~~~~~~~~~~ 724 (733)
|+++.+.-.+..+.+.|.+.
T Consensus 411 ~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred ccccHHHHHHHHHHHhhhhH
Confidence 66776666666666655543
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.60 E-value=2.6 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 693 VYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.+..++.+|...|++++|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566666666666666666665544
No 349
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.33 E-value=14 Score=34.91 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=70.6
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH
Q 004733 516 NNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE-KDT-----ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ 589 (733)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 589 (733)
.|...+..+....+..-....+++.+...+-++.. |+. .+-...++.+.+ -++++++.++..=++-| +.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYG-iF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYG-IFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhc-cccch
Confidence 34444444555555555556777888777766652 221 112223444443 37789999999989999 99999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVND 618 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 618 (733)
.+++.+++.+.+.+++.+|.++.-.|..+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999888877765
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.11 E-value=2.5 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
..+..+...+...|+++.|...++.+.+..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667788889999999999999999988763
No 351
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.94 E-value=4.6 Score=41.42 Aligned_cols=102 Identities=15% Similarity=0.026 Sum_probs=72.9
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHH
Q 004733 600 SHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGR 677 (733)
Q Consensus 600 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 677 (733)
...|+...|...+...... ...-.......|...+.+.|..-+|-.++.... ....+-++..+..++....++++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~-~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL-APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhcc-ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4578888888888877644 222223355667777888888788887766533 3334456677778888888999999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHH
Q 004733 678 IIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 678 ~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
+.++.+++++|+++.+-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999998888777665543
No 352
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.91 E-value=8.2 Score=29.24 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=36.9
Q ss_pred hcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 650 SQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 650 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
.+..-|++....+.+.+|.+.+|+..|+++++-+...-.++...|..+.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3447788888899999999999999999999887765554445555544
No 353
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.48 E-value=8.4 Score=29.53 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=35.6
Q ss_pred cCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 651 QHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 651 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
+-.-|++.+..+.+.+|.+.+|+..|+++++-+...-.+....|..+.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 447899999999999999999999999999998887766655666665
No 354
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.41 E-value=9.5 Score=28.90 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 004733 571 EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCML 632 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 632 (733)
++.+-++.+.... +.|++....+.+.+|.+.+++..|.++++.+..+ ...+...|..++
T Consensus 25 e~rr~mN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYD-LVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 4445555555555 6777777777777777777777777777777654 222333454444
No 355
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.04 E-value=2.1 Score=25.21 Aligned_cols=20 Identities=5% Similarity=0.192 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhccCCHHHHH
Q 004733 590 ATFTAVLSACSHAGLVDDGT 609 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~ 609 (733)
..|..+...|...|++++|+
T Consensus 14 ~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555543
No 356
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.78 E-value=3.3 Score=27.51 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 693 VYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 693 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.++.++.++++.|++++|+++.+.+.+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 467888999999999999999999987554
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.01 E-value=91 Score=34.12 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=88.4
Q ss_pred hhhHHHHHhhccCChhHHHHHhccCC---CCChhhHHHHHHHHhhcCC-------hhHHHHHHHHHHHcCCCCChh--hH
Q 004733 125 SWTTFLSACTKMGHVDYACEVFDKMP---DRDLPVYNAMITGCTENGY-------EDIGIGLFREMHKLDVRRDNY--SF 192 (733)
Q Consensus 125 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~--~~ 192 (733)
.| .+|.-|.|+|++++|.++..+.. +.....+-..+..+....+ -++...-|++..+.....|+. ..
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~Av 192 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAV 192 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 44 46777889999999999993332 2334566677777766532 235556666666554433554 33
Q ss_pred HHHHHhh-c-cCchHH-H---HHH--HHH-HHHhCCC-----CchHHHHHHHHHhHhcCChHHHHHHHHhhh--cCCCCc
Q 004733 193 ASVLSVC-D-AGLLEF-G---RQL--HSL-VTKSGFS-----CLVSVVNALITMYFNCGNVVDACKVFEEAK--GYVCDH 256 (733)
Q Consensus 193 ~~ll~~~-~-~~~~~~-a---~~~--~~~-~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~ 256 (733)
-.+++.| . ...... + .+. ++- +++.+.. .+..++. +..+.+.+.. ...+ .
T Consensus 193 Y~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~-------------~LQ~~i~~~Ge~~F~~-~ 258 (613)
T PF04097_consen 193 YKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLE-------------DLQKLILKYGESHFNA-G 258 (613)
T ss_dssp HHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HH-------------HHHHHHHHH-GGGCTT--
T ss_pred HHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHH-------------HHHHHHHHhchhhccc-c
Confidence 3455666 2 222211 1 111 110 1111110 0111222 2222222111 1112 1
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHh-CCCcchHHHHHHHHHHHh
Q 004733 257 ISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKS-GFEAYTSVSNAAITMYSS 335 (733)
Q Consensus 257 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~li~~~~~ 335 (733)
...-.....+.-.|+++.|++.+-+ ..+...+.+.+...+..+.-+.........+... .-.+.+--+..||..|.+
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH
Confidence 1112234566778999999999877 3345667777777776655111111111111111 111111345666666665
Q ss_pred c---CCHHHHHHHHHhccc
Q 004733 336 C---GKIDEACMIFARLQE 351 (733)
Q Consensus 336 ~---g~~~~a~~~~~~~~~ 351 (733)
. .+..+|.++|--+..
T Consensus 337 ~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGG
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 3 456666666655544
No 358
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.73 E-value=3.3 Score=25.53 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 004733 21 LLKLNISLANLSRSGHYQDALHLFVQIHS 49 (733)
Q Consensus 21 ~~~~n~~l~~~~~~~~~~~a~~~~~~~~~ 49 (733)
..++|.+..+|...|++++|+.++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45788899999999999999999988743
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.36 E-value=8.9 Score=31.22 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=37.0
Q ss_pred CCCchHHHHHHHHhhhcCChH---HHHHHHHhcC--CCCCh--hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 622 IPAEDHLSCMLDLLGRAGYLD---EAERVINSQH--IQARS--DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 622 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
.++..+--.+..++.+..+.+ +.+.+++++. ..|.. ....-+.-++.+.|++++++++++.+++.+|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555555666666655433 3334454433 12221 122334444566666666666666666666665543
No 360
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.17 E-value=40 Score=36.19 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=59.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC
Q 004733 563 YAQHGEGKEAVSCFKAMQDVGRIKPDQAT---FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG 639 (733)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 639 (733)
|...+..+.|.++|++..+ +.|+..+ +..|+.+..+ .++...++ ..- | ..|-..+++.|
T Consensus 297 ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~--~Fens~El----q~I-g--------mkLn~LlgrKG 358 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGE--HFENSLEL----QQI-G--------MKLNSLLGRKG 358 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhh--hccchHHH----HHH-H--------HHHHHHhhccc
Confidence 4455566777888888777 5676543 3333332221 11111111 111 1 12334556777
Q ss_pred ChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 640 YLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 640 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
..+.-.++++- ..++.+-.-.+|+.+|.+..+.+.++.|+.-
T Consensus 359 ~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 359 ALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 77776666653 2355666778899999999999999998753
No 361
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.04 E-value=92 Score=33.59 Aligned_cols=246 Identities=11% Similarity=0.030 Sum_probs=131.5
Q ss_pred HhCCCchHHHHHHHHHHH-------CCCCCCHHhHHHHHHHhccc----C-ChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004733 463 LLNGFPVQGLQHFSELLM-------SELRPDEYTLSVALSSCARI----S-SLRHGKQIHGYVLKNNLISKMSLGNAMIT 530 (733)
Q Consensus 463 ~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 530 (733)
....+.+.|+..|+...+ .|. ......+-.+|.+. . +...|..++......|.+.... .+..
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~---~lg~ 333 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQY---LLGV 333 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHH---HHHH
Confidence 344566677777766655 441 11223333333332 2 4555666666666666443322 1222
Q ss_pred HHHhc---CCHHHHHHHHHhcCCCC-hhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 004733 531 LYAKC---GDLDCSLRVFNMMIEKD-TISWNALISAYA----QHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHA 602 (733)
Q Consensus 531 ~~~~~---~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 602 (733)
++... .+...|.++|....+.+ +..+-.+..+|. ...+.+.|..++++..+.| .|...--...+..+..
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcc-
Confidence 23222 34667888777766432 222222222222 2347788888888888876 3332222223334444
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHh---hh----cCChHHHHHHHHhcCCCCChhhHHHHHHHHHh----hC
Q 004733 603 GLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLL---GR----AGYLDEAERVINSQHIQARSDNWWALFSACAA----HG 671 (733)
Q Consensus 603 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 671 (733)
++++.+.-.+..+.+. |.+-....-..+.... .. ..+.+.+...+.+....-+......+...|.. ..
T Consensus 411 ~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 411 GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCC
Confidence 6666666666655554 4332222222222211 11 22455666666665545555555555555432 34
Q ss_pred CHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc-C--ChHHHHHHHHHHHhCC
Q 004733 672 NLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA-G--LWEEAANIRELLKRTG 721 (733)
Q Consensus 672 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 721 (733)
+++.|...+..+.+.. +.....|+..+-.- | ++..|.+++++..+.+
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 6888888888888877 66777788766541 2 2688999998877644
No 362
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.30 E-value=1.3 Score=37.41 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 004733 493 ALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFN 546 (733)
Q Consensus 493 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 546 (733)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344455555555555556655555444555555666666666555555555544
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.23 E-value=57 Score=34.26 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred hhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHH
Q 004733 133 CTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLH 211 (733)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~ 211 (733)
.+-.|+++.|..++..++++ ..+.+...+-++|..++|+++ .+|+..- .... +.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHH
Confidence 34567788877777666632 345566667777777777654 2332211 1222 567777777665
Q ss_pred HHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004733 212 SLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVAS 286 (733)
Q Consensus 212 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 286 (733)
.+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-...++.|
T Consensus 661 ~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 661 VEA------NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred Hhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 543 2445577777877788888888888766543 4556666666676665555444444443
No 364
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.88 E-value=17 Score=32.20 Aligned_cols=73 Identities=8% Similarity=0.012 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC--CCCCchHHHHHHHHhhhcCChHHH
Q 004733 570 KEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYG--FIPAEDHLSCMLDLLGRAGYLDEA 644 (733)
Q Consensus 570 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 644 (733)
+.|.+.|-++...+ .--++.....|...|. ..+.++++.++-+..+..+ -.+|++.+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 56777777776665 3333344444444443 4567777777777665422 245566666666666666666655
No 365
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.71 E-value=67 Score=30.17 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=79.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHH-------HHHHHHHHHhccCCHHHHHHHHHHhH---hhcCCCCCchHHHHHHH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQA-------TFTAVLSACSHAGLVDDGTRIFDSMV---NDYGFIPAEDHLSCMLD 633 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~p~~~~~~~l~~ 633 (733)
.+.+++++|+..+.+....| +..|.. +..-+...|...|++....+...... ..+.-+.......++++
T Consensus 14 v~~~~~~~ai~~yk~iL~kg-~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKG-VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCC-CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 44566666666666666666 544433 33345556666665554433332221 11121222334555555
Q ss_pred Hhhhc-CChHHHHHHHHhcC---CCCChhh-----HHHHHHHHHhhCCHHHHHHHHHHHhc----cC--CCCchHHHHHH
Q 004733 634 LLGRA-GYLDEAERVINSQH---IQARSDN-----WWALFSACAAHGNLRLGRIIAGLLLE----RE--QDKPSVYVLLS 698 (733)
Q Consensus 634 ~~~~~-g~~~~A~~~~~~~~---~~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~~~l~ 698 (733)
.+.-. ..++.-+.++.... ....... --.++..+.+.|.+..|+.....+.. .+ |.-...+..=.
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 55332 33555555554432 1111111 12455667778888888777665543 22 44445566667
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 004733 699 NIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~ 718 (733)
.+|.+..+..++..-+...+
T Consensus 173 Kvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 173 KVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred HHHHHHHhhhhhhhHHHHHH
Confidence 77877777777776665544
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.64 E-value=97 Score=31.96 Aligned_cols=161 Identities=12% Similarity=0.059 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004733 451 NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMIT 530 (733)
Q Consensus 451 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 530 (733)
|....-+++..+...-.+.-...+-.+|..-| -+...+..++..|... ..+.-..+|+++.+..+.. ...-..++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD-vv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND-VVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-HHHHHHHHH
Confidence 44455566666666666666777777777654 5556666666666666 4455556666666655432 222344555
Q ss_pred HHHhcCCHHHHHHHHHhcCCC------Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 531 LYAKCGDLDCSLRVFNMMIEK------DT---ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 531 ~~~~~~~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
.|.+ ++...+..+|.++... +. ..|..+...- ..+.+..+.+..+.........-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5544 5666666666655311 11 1344443311 234455555555544322122223334444455556
Q ss_pred cCCHHHHHHHHHHhHhh
Q 004733 602 AGLVDDGTRIFDSMVND 618 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~ 618 (733)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66666666666666544
No 367
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.48 E-value=77 Score=30.72 Aligned_cols=148 Identities=9% Similarity=-0.049 Sum_probs=75.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC----
Q 004733 568 EGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH----AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG---- 639 (733)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---- 639 (733)
+..+|..+|+.+-+.| . | .....|...|.. ..+..+|...++++.+. |..+.......+...|...+
T Consensus 92 ~~~~A~~~~~~~a~~g-~-~--~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 92 DKTKAADWYRCAAADG-L-A--EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cHHHHHHHHHHHhhcc-c-H--HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhc
Confidence 4555666666555544 1 1 111122222222 23566666666666655 54433222333333333221
Q ss_pred ---ChHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC-------
Q 004733 640 ---YLDEAERVINSQHIQARSDNWWALFSACAA----HGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG------- 705 (733)
Q Consensus 640 ---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 705 (733)
+...|...+.++...-++.....+...|.. ..|+++|...++++.+... ......++ .+...|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~ 243 (292)
T COG0790 167 VAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAA 243 (292)
T ss_pred ccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhh
Confidence 223566666655433344444444433322 3367788888888877776 55556666 555555
Q ss_pred --------ChHHHHHHHHHHHhCCCc
Q 004733 706 --------LWEEAANIRELLKRTGVI 723 (733)
Q Consensus 706 --------~~~~A~~~~~~~~~~~~~ 723 (733)
+...|...+...-..+..
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCh
Confidence 667777777766666543
No 368
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.38 E-value=1.6e+02 Score=34.25 Aligned_cols=228 Identities=12% Similarity=0.003 Sum_probs=113.2
Q ss_pred CCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHHhhccCh-HHHHHHHHhcCCCCcchhhHHHHH
Q 004733 54 KPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYKNARDL-VSVKRVFSEIQNPDVYSWTTFLSA 132 (733)
Q Consensus 54 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~l~~~ 132 (733)
.+|+.+-...+..+.+.+.... ...+...++ .++..+-...+.++.+.+.. .....+......+|+......+.+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~-~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGF-GPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhH-HHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 4666676666777776665443 333333332 33444555555555544322 112222233334666666666666
Q ss_pred hhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchH-HHHHH
Q 004733 133 CTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLE-FGRQL 210 (733)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~-~a~~~ 210 (733)
+...+.. ....++..+..+|...-...+.++.+.+..+. +..... .++...-.....++ ..+..+ .+...
T Consensus 708 L~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 708 LRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHH
Confidence 6544321 12344455566676666666777766554332 122222 23444444444444 333322 12333
Q ss_pred HHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHH-HHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004733 211 HSLVTKSGFSCLVSVVNALITMYFNCGNVVDACK-VFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRP 289 (733)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 289 (733)
+..+.+ .++..+-...+.++.+.|....+.. +...+.. ++...-...+.++.+.+. +++...+-.+.+ .|
T Consensus 780 L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d--~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~ 850 (897)
T PRK13800 780 VRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA--SAWQVRQGAARALAGAAA-DVAVPALVEALT---DP 850 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC--CChHHHHHHHHHHHhccc-cchHHHHHHHhc---CC
Confidence 444443 3566677777777777776554433 3333334 555555555666666654 345555555543 34
Q ss_pred ChhhHHHHHHHcc
Q 004733 290 SELTFVSVMSACL 302 (733)
Q Consensus 290 ~~~t~~~ll~~~~ 302 (733)
+...-...+.++.
T Consensus 851 ~~~VR~~A~~aL~ 863 (897)
T PRK13800 851 HLDVRKAAVLALT 863 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 5444444555544
No 369
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.15 E-value=1.4e+02 Score=33.39 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 324 SVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEM 380 (733)
Q Consensus 324 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 380 (733)
.....-...+...|..++|++. -++.|+++.|..+++..
T Consensus 348 ~lH~~Aa~w~~~~g~~~eAI~h------------------AlaA~d~~~aa~lle~~ 386 (894)
T COG2909 348 ELHRAAAEWFAEHGLPSEAIDH------------------ALAAGDPEMAADLLEQL 386 (894)
T ss_pred HHHHHHHHHHHhCCChHHHHHH------------------HHhCCCHHHHHHHHHhh
Confidence 3444455666667777666543 45677777777777765
No 370
>PRK10941 hypothetical protein; Provisional
Probab=76.11 E-value=20 Score=33.96 Aligned_cols=69 Identities=9% Similarity=-0.044 Sum_probs=52.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHH
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
+.+-.+|.+.++++.|+...+.+. ..| ++.-++.-.-.|.+.|.+..|..-++..++..|+++.+-..-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 345667788888888888888766 444 444577777778899999999999999999999888764443
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.63 E-value=9.5 Score=29.25 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHhhCCHHHHHHHHHHHhccCCC----C-----chHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 667 CAAHGNLRLGRIIAGLLLEREQD----K-----PSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 667 ~~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
..+.||+..|...+.+..+.... . ......++..+...|++++|...+++..+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35677777776666666653321 1 2334567788889999999999999887643
No 372
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.53 E-value=1e+02 Score=31.74 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=30.5
Q ss_pred HHcccccCchh--hHhHHHHHhhccChHHHHHHHHhcCCCCcc--hhhHHHHHhhccCChhHHHHHhcc
Q 004733 84 LRAGLKAYPHV--ANTILSLYKNARDLVSVKRVFSEIQNPDVY--SWTTFLSACTKMGHVDYACEVFDK 148 (733)
Q Consensus 84 ~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 148 (733)
++.|..++... ..+.+......|+.+-++-+++.+..|+.. .....+...++.|+.+.+..+++.
T Consensus 22 l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 22 LDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 34455554322 334445555566666666555555443321 111223334455555555555543
No 373
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.40 E-value=52 Score=31.22 Aligned_cols=97 Identities=10% Similarity=0.124 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHhc-cC-CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC----CCCChhh
Q 004733 586 KPDQATFTAVLSACSH-AG-LVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH----IQARSDN 659 (733)
Q Consensus 586 ~p~~~~~~~ll~~~~~-~~-~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~ 659 (733)
--|......+++.... .+ ....--++.+-+...++-.++..+...++..+++.++|.+-.++++... ...|...
T Consensus 161 i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rp 240 (292)
T PF13929_consen 161 IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRP 240 (292)
T ss_pred eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCch
Confidence 3444455555554433 11 1222223333444444556667777777777777777777777776544 2334556
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHH
Q 004733 660 WWALFSACAAHGNLRLGRIIAGL 682 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~ 682 (733)
|..++......||..-...+.+.
T Consensus 241 W~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 241 WAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHHcCCHHHHHHHhhC
Confidence 77777777777776655555443
No 374
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=75.31 E-value=5.2 Score=35.81 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=31.6
Q ss_pred hhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch
Q 004733 635 LGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
..+.|+.+.|.+++.+.. ..| ....|..+.....+.|+++.|.+.+++.++++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 345555555555555544 222 2334555555555666666666666666666665543
No 375
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.28 E-value=77 Score=31.81 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC--CCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhH-
Q 004733 586 KPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYG--FIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNW- 660 (733)
Q Consensus 586 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~- 660 (733)
+-...++..+-..|..+|+.+.|.+++++.+-.++ +.|. +..+.. -...|. .++. ..-+...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~---F~~~~~-~~~~g~--------~rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS---FSPFRS-NLTSGN--------CRLDYRRPENRQFFL 104 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---hhhhhc-ccccCc--------cccCCccccchHHHH
Confidence 34456677777788888888888888877753211 0111 000000 000010 0111 11122333
Q ss_pred --HHHHHHHHhhCCHHHHHHHHHHHhccCCC-CchHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 004733 661 --WALFSACAAHGNLRLGRIIAGLLLEREQD-KPSVYVLLSNIYA-AAGLWEEAANIRELLKR 719 (733)
Q Consensus 661 --~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 719 (733)
...+..+.+.|-+..|.+..+.++.++|. ||-.....+..|+ +.++++--+++.+....
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34455667888899999999999999988 7776666665555 56777767777766554
No 376
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.03 E-value=3.2 Score=41.64 Aligned_cols=101 Identities=7% Similarity=-0.026 Sum_probs=67.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH-HHHHHHhhhcCChHHHHHHHHh-cCCCCChh-hHHHHHHHHHhhCC
Q 004733 596 LSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHL-SCMLDLLGRAGYLDEAERVINS-QHIQARSD-NWWALFSACAAHGN 672 (733)
Q Consensus 596 l~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~ 672 (733)
+..+...+.++.|..++.++++. .|+-..| ..=..++.+.+++..|+.=+.+ +...|... .|..-..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34556677888888888888854 6764433 3334677788888777754443 33444432 45555566777788
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 673 LRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 673 ~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
+.+|...++......|+++.+...+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 888888888888888888876555543
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.45 E-value=1.8e+02 Score=33.88 Aligned_cols=256 Identities=8% Similarity=-0.088 Sum_probs=129.6
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC
Q 004733 441 YQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLIS 520 (733)
Q Consensus 441 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 520 (733)
..+...+..+++..-..-+..+.+.+.. .+...+....+ .++...-...+.++...+........+..+... +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 3444555566666666666666665543 34444444443 234433334444443332211111222222222 4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACS 600 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 600 (733)
+..+-...+.++...+.-+ ...+...+..+|...-...+.++.+.+..+. +..+. -.++...-.....++.
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l----~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA----TDENREVRIAVAKGLA 767 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh----cCCCHHHHHHHHHHHH
Confidence 5555555666665443211 2334455556676666666666666554332 22222 2456555555566665
Q ss_pred ccCCHHH-HHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHH
Q 004733 601 HAGLVDD-GTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRII 679 (733)
Q Consensus 601 ~~~~~~~-A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 679 (733)
..+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+......++...-...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5554332 3444445543 356667777788888888765554444444445665555566666666665 334444
Q ss_pred HHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 680 AGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 680 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+..+++ -++..+-..-++++...+.-.++...+..+.+
T Consensus 843 L~~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 444442 22344555555555554334456666665554
No 378
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.93 E-value=46 Score=31.83 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=16.3
Q ss_pred HHHHHHHHHhccCCCCchHHH
Q 004733 675 LGRIIAGLLLEREQDKPSVYV 695 (733)
Q Consensus 675 ~A~~~~~~~~~~~p~~~~~~~ 695 (733)
.|++.+.++++.+|.-|..+.
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 478888889999988776544
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.85 E-value=7.6 Score=28.15 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=27.0
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHH
Q 004733 601 HAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERV 647 (733)
Q Consensus 601 ~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 647 (733)
.+...++|+..|+..+++..-.|+ ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777665221222 22455666667777776666655
No 380
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=73.77 E-value=62 Score=28.40 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc------------------CCcccHHHHHHHHHhcCChHHHHHHHHH
Q 004733 327 NAAITMYSSCGKIDEACMIFARLQE------------------KDIVSWNTMISTYAQRNLGRSAILAYLE 379 (733)
Q Consensus 327 ~~li~~~~~~g~~~~a~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 379 (733)
-+++-.|-+..++.+..++++.+.+ +--..-|.....+.+.|..+.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4567778888899999999888764 1223467888899999999999999984
No 381
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.14 E-value=6.9 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 671 GNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 671 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
|+.+.|..+++++....|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788999999999999988888877764
No 382
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.07 E-value=29 Score=34.99 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=93.6
Q ss_pred HHHHHhcCCHHHHHH-HHHhcC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCH
Q 004733 529 ITLYAKCGDLDCSLR-VFNMMI--EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLV 605 (733)
Q Consensus 529 ~~~~~~~~~~~~A~~-~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 605 (733)
|.--...|+...|.+ ++..+. ..++.........+...|+++.+...+...... +.....+..++++.....|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhH
Confidence 344445677766655 444433 123333333334456789999999988776553 345667888999999999999
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHH--HHhhCC-HHHHHHHH
Q 004733 606 DDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSA--CAAHGN-LRLGRIIA 680 (733)
Q Consensus 606 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~--~~~~g~-~~~A~~~~ 680 (733)
++|...-+.|... .++ +++....-....-..|-++++.-.++++. .+|....|..++.. |...|+ +.+|...-
T Consensus 374 ~~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~ 451 (831)
T PRK15180 374 REALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAG 451 (831)
T ss_pred HHHHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhh
Confidence 9999999999865 332 34444333344445677889988888765 45555556555554 334443 55555443
Q ss_pred HH
Q 004733 681 GL 682 (733)
Q Consensus 681 ~~ 682 (733)
-+
T Consensus 452 ~~ 453 (831)
T PRK15180 452 IQ 453 (831)
T ss_pred hh
Confidence 33
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.15 E-value=29 Score=25.85 Aligned_cols=39 Identities=8% Similarity=0.132 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHH
Q 004733 534 KCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAV 573 (733)
Q Consensus 534 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 573 (733)
..|+.+.|.+++..+. ..+..|..++.++...|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5578888888888888 78888888888888887766554
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.79 E-value=53 Score=27.00 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=40.3
Q ss_pred CCChhhHHHHHHHHHhhC---CHHHHHHHHHHHhc-cCCCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 654 QARSDNWWALFSACAAHG---NLRLGRIIAGLLLE-REQDKP-SVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 654 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
.+...+-..+.+++.+.. |.++.+.+++...+ ..|... ...+.|+-.+++.|++++++++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344445555666665544 35566667777665 334332 345556666777777777777777666544
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.36 E-value=44 Score=25.67 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=41.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 004733 530 TLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFT 593 (733)
Q Consensus 530 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 593 (733)
..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+++..-+.+|-..| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg--~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG--DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 34566788888888888888888888766543 35667777777777777776 55555543
No 386
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=70.79 E-value=1.2e+02 Score=30.23 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=72.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcCCCCC--------hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc-------hH
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQHIQAR--------SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP-------SV 693 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~ 693 (733)
..|...+...|+.++|.+++...+...- ......-++.|...+|+-.|.-+-++.....-+++ ..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 4567788889999999999988762111 11223445678899999999999988877554433 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCC
Q 004733 694 YVLLSNIYAAAGLWEEAANIRELLKRTGVIKQP 726 (733)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 726 (733)
|..+.....+.+.+=++-++++..-..|..+..
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d 247 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKED 247 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccC
Confidence 777888888889999999999988887766653
No 387
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.45 E-value=97 Score=29.19 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=27.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 004733 360 MISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFG 393 (733)
Q Consensus 360 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 393 (733)
+.+-..+.+++++|+..+.++...|+..|..+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 3445567789999999999999999888887763
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.05 E-value=13 Score=27.08 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=36.2
Q ss_pred hhCCHHHHHHHHHHHhccCCCCchHHH---HHHHHHHhcCChHHHHHHH
Q 004733 669 AHGNLRLGRIIAGLLLEREQDKPSVYV---LLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~ 714 (733)
...+.++|+..++.+++..++.+.-+. .|+.+|...|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999998877665554 4557788899999988864
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.85 E-value=39 Score=35.20 Aligned_cols=134 Identities=14% Similarity=0.005 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHhcc--CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC--hhhHH
Q 004733 587 PDQATFTAVLSACSHA--GLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR--SDNWW 661 (733)
Q Consensus 587 p~~~~~~~ll~~~~~~--~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~ 661 (733)
|+..+...++.-.... ...+-+-.++-.|. + .+-|--.+++.-.-.....|+...|...+.... ..|. .....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 5666655554433221 12233444444443 2 333333333322222345688999998877654 4443 23456
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 662 ALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 662 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.+.....+.|-.-.|-.++.+.+.+....|-+++.++++|....+.+.|++.|++..+...
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 7778888888888899999999999999999999999999999999999999998887554
No 390
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.16 E-value=23 Score=29.57 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=40.0
Q ss_pred ChhhHHHHHHHHhhcCC-hhHHHHHHHHHHHcCCCCChhhHHHHHHhhccCchH
Q 004733 153 DLPVYNAMITGCTENGY-EDIGIGLFREMHKLDVRRDNYSFASVLSVCDAGLLE 205 (733)
Q Consensus 153 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 205 (733)
+..+|++++.+..+... ---+..+|.-|.+.+.+++...|..++.+|..|...
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 55678888888876666 445677888888888888888999999888444443
No 391
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.92 E-value=1e+02 Score=28.76 Aligned_cols=89 Identities=9% Similarity=0.106 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC--------CC-------hhhHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHH
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSP--------RN-------IITWNTLINGFLLNGFPVQGLQHFSELLMSE-LRPDEY 488 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~ 488 (733)
+.+...|...|++....++++++.. .| ...|..-|..|....+..+...++++.+.-. --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3456667777777777777776631 11 1346666677777777777666776654422 233333
Q ss_pred hHHHHHHHhc-----ccCChHHHHH-HHHHHH
Q 004733 489 TLSVALSSCA-----RISSLRHGKQ-IHGYVL 514 (733)
Q Consensus 489 ~~~~ll~~~~-----~~~~~~~a~~-~~~~~~ 514 (733)
. ..+|+-|. +.|.+++|.. +|+.+.
T Consensus 229 I-mGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 229 I-MGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred H-HhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 3 23444443 3455655543 444444
No 392
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=67.80 E-value=59 Score=32.29 Aligned_cols=137 Identities=11% Similarity=0.035 Sum_probs=77.7
Q ss_pred hhhHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH--------HHHHhccCCHHHHHHHHHHhHhhcCCC
Q 004733 553 TISWNALISAY--AQHGEGKEAVSCFKAMQDVGRIKPDQATFTAV--------LSACSHAGLVDDGTRIFDSMVNDYGFI 622 (733)
Q Consensus 553 ~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l--------l~~~~~~~~~~~A~~~~~~~~~~~~~~ 622 (733)
+..|-.++-.+ ...+++.+|..+-+.....- ..-|..++..+ -.+|...|+...-..++.......-+.
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 34454443332 34577888888777665433 23344444333 234455677666666666555432333
Q ss_pred CCch----HHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHH-------HHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 623 PAED----HLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWAL-------FSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 623 p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
.|.. ..+.|++.|...+.++.|.++..+.. -|...+-+.. ......++++..|.+.+-.+....|.+.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 3322 45667777777888888888887766 2222221111 1223456777888888888877777643
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.77 E-value=62 Score=30.46 Aligned_cols=19 Identities=5% Similarity=-0.073 Sum_probs=8.5
Q ss_pred HhccCCHHHHHHHHHHhHh
Q 004733 599 CSHAGLVDDGTRIFDSMVN 617 (733)
Q Consensus 599 ~~~~~~~~~A~~~~~~~~~ 617 (733)
|++.+.+..+.++-....+
T Consensus 128 ysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 128 YSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHhcCHHHHHHHHHHHHh
Confidence 4444444444444444443
No 394
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.40 E-value=29 Score=28.97 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCC
Q 004733 642 DEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGL 706 (733)
Q Consensus 642 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 706 (733)
+.|.++.+-|. ...............|++.-|.++.+.++..+|++..+-...+.+|...|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44555555543 333344455567789999999999999999999999999999988887764
No 395
>PF15469 Sec5: Exocyst complex component Sec5
Probab=65.75 E-value=31 Score=30.58 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHHHhCCCcCCCcccccCC
Q 004733 705 GLWEEAANIRELLKRTGVIKQPGCSWIGS 733 (733)
Q Consensus 705 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 733 (733)
...++..++...+.+.++..+|.+-|+.|
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~~ 181 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLES 181 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHc
Confidence 56788888899999999999999999875
No 396
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.29 E-value=41 Score=28.18 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=64.5
Q ss_pred chhhHHHHHHHHHcCCChHHHHHHHHHHHhcCC----CCCCcccHHHHHHHHhccch-hhhhhhHHHHHHHcccccCchh
Q 004733 20 LLLKLNISLANLSRSGHYQDALHLFVQIHSSHK----LKPDIYSLSTTLAACANLRN-AAFGNQLHAYALRAGLKAYPHV 94 (733)
Q Consensus 20 ~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 94 (733)
-....|.+|..+...+++...+.+++.+..-.+ -..+...|++++.+.+.... ..-+..++..+.+.+.++++.-
T Consensus 38 k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~d 117 (145)
T PF13762_consen 38 KTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSD 117 (145)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 346689999999999999988888887743222 13566789999999987776 5556677777777778888888
Q ss_pred hHhHHHHHhhc
Q 004733 95 ANTILSLYKNA 105 (733)
Q Consensus 95 ~~~l~~~~~~~ 105 (733)
|..++.++.+.
T Consensus 118 y~~li~~~l~g 128 (145)
T PF13762_consen 118 YSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHcC
Confidence 88888877655
No 397
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.13 E-value=23 Score=22.97 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=22.8
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 004733 194 SVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALIT 231 (733)
Q Consensus 194 ~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 231 (733)
.++.+.+.|-.+++..+++.|.+.|+..+...+..++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34444456666666666777766666666666555543
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.71 E-value=1.3e+02 Score=28.54 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=46.4
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHH-HHHHH
Q 004733 624 AEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLL-SNIYA 702 (733)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~~ 702 (733)
++.....+...|.+.|++.+|+..|-.-. .|+...+..++.. ...+..|.+...+..- +--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~---------------~~~~~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEE---------------WSTKGYPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHH---------------HHHHTSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHH---------------HHHhcCCcchhHHHHHHHHHHH
Confidence 35567778889999999999988775422 1111111112222 2223445555544433 34477
Q ss_pred hcCChHHHHHHHHHHHhC
Q 004733 703 AAGLWEEAANIRELLKRT 720 (733)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~ 720 (733)
..|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 889999999988877665
No 399
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.61 E-value=67 Score=25.14 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHH--HHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHH
Q 004733 604 LVDDGTRIFDSMVNDYGFIPAEDHLSCM--LDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAG 681 (733)
Q Consensus 604 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 681 (733)
..++|..+.+-+... + +..-...+ +..+.+.|++++|+..=... ..||...|.++ +-.+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~-~---~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~-~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQE-G---EMEEVVALIRLSSLMNRGDYQEALLLPQCH-CYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHT-T---TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS---GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-C---cHHHHHHHHHHHHHHhhHHHHHHHHhcccC-CCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 456676666666544 1 22222222 33456677777772221111 24444444332 2345565555555555
Q ss_pred HH
Q 004733 682 LL 683 (733)
Q Consensus 682 ~~ 683 (733)
++
T Consensus 94 rl 95 (116)
T PF09477_consen 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 400
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.17 E-value=1e+02 Score=29.88 Aligned_cols=18 Identities=6% Similarity=0.278 Sum_probs=9.5
Q ss_pred ccCCHHHHHHHHHHhHhh
Q 004733 601 HAGLVDDGTRIFDSMVND 618 (733)
Q Consensus 601 ~~~~~~~A~~~~~~~~~~ 618 (733)
+.++.++|.++++++.+.
T Consensus 87 ~~~D~~~al~~Le~i~~~ 104 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEK 104 (380)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 334555555555555543
No 401
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.86 E-value=11 Score=33.80 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=34.8
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 599 CSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 599 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
..+.++.+.|.+++.+.... .+-+...|-.+...-.++|+.+.|.+.+++..
T Consensus 5 ~~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 34567777777777777643 22335577777777777888777777776644
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.51 E-value=39 Score=27.18 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=39.8
Q ss_pred hcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 650 SQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 650 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
.+..-|++....+.+++|.+-+|+..|+++++-....-++...+|..+.
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3447899999999999999999999999999998887766655555554
No 403
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.24 E-value=44 Score=32.21 Aligned_cols=86 Identities=13% Similarity=-0.056 Sum_probs=61.0
Q ss_pred HHHhhhcCChHHHHHHHHhcC----CCCCh--hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC
Q 004733 632 LDLLGRAGYLDEAERVINSQH----IQARS--DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~----~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 705 (733)
..-|.+..++..|...+.+-. ..|+. ..|..-..+-...|++..|+.-..+++..+|.+...|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 455667778888887776533 22332 234444555567788999999999999999999988888888888888
Q ss_pred ChHHHHHHHHHH
Q 004733 706 LWEEAANIRELL 717 (733)
Q Consensus 706 ~~~~A~~~~~~~ 717 (733)
++++|...-++.
T Consensus 168 ~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 168 RFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHhhh
Confidence 866666554443
No 404
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.66 E-value=18 Score=22.92 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVG 583 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~ 583 (733)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4455556666666666666655433
No 405
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.02 E-value=2.7e+02 Score=31.23 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=23.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHH
Q 004733 427 LISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSE 477 (733)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 477 (733)
....+...|+.+.+..+-.-+. -|..++.-+++.+.+++|++++..
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455554444433332 245555666666666666666554
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.44 E-value=72 Score=26.14 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcc--CCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 004733 675 LGRIIAGLLLER--EQDKPSVYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 675 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
.+..+++.+... +-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 666777776664 355667788888888888898888888875
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.76 E-value=99 Score=27.08 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc
Q 004733 329 AITMYSSCGKIDEACMIFARLQE 351 (733)
Q Consensus 329 li~~~~~~g~~~~a~~~~~~~~~ 351 (733)
.+-.|.+.|.+++|.++|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 35668888999999998888765
No 408
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.71 E-value=29 Score=20.80 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 004733 695 VLLSNIYAAAGLWEEAANI 713 (733)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~ 713 (733)
..++-.+..+|++++|+++
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3344444445555555554
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.35 E-value=1.9e+02 Score=29.04 Aligned_cols=174 Identities=13% Similarity=0.022 Sum_probs=84.0
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 004733 532 YAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRI 611 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 611 (733)
+...++.+.-..++..-+ -.+.++..+...+.+.|+.+.|.+++++..-.- -..-...|..+.. -...|.
T Consensus 20 ~v~~~Dp~~l~~ll~~~P-yHidtLlqls~v~~~~gd~~~A~~lleRALf~~-e~~~~~~F~~~~~-~~~~g~------- 89 (360)
T PF04910_consen 20 AVQSHDPNALINLLQKNP-YHIDTLLQLSEVYRQQGDHAQANDLLERALFAF-ERAFHPSFSPFRS-NLTSGN------- 89 (360)
T ss_pred HHHccCHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHhhhhhc-ccccCc-------
Confidence 334456666665553321 144566777788999999999999988875311 0000000100000 000000
Q ss_pred HHHhHhhcCCCCCchHHHH---HHHHhhhcCChHHHHHHHHhcC-CCC--ChhhHHHHHHHHH-hhCCHHHHHHHHHHHh
Q 004733 612 FDSMVNDYGFIPAEDHLSC---MLDLLGRAGYLDEAERVINSQH-IQA--RSDNWWALFSACA-AHGNLRLGRIIAGLLL 684 (733)
Q Consensus 612 ~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 684 (733)
..-.+...-|...|.+ .+..+.+.|-+..|.++.+-+. ..| |+-....++..|+ +.++++--+.+.+...
T Consensus 90 ---~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 90 ---CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred ---cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 0000011112222222 3455666666666666655433 333 3333444445443 5556665555555544
Q ss_pred ccCC-----CCchHHHHHHHHHHhcCCh---------------HHHHHHHHHHH
Q 004733 685 EREQ-----DKPSVYVLLSNIYAAAGLW---------------EEAANIRELLK 718 (733)
Q Consensus 685 ~~~p-----~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~ 718 (733)
.... .-|..-+..+.++...++. ++|...+.+..
T Consensus 167 ~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 167 AKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred hhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
Confidence 4111 1234555666667777666 66766665543
No 410
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=59.89 E-value=1.8e+02 Score=28.65 Aligned_cols=114 Identities=10% Similarity=0.037 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhh---cCChHHH
Q 004733 569 GKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGR---AGYLDEA 644 (733)
Q Consensus 569 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A 644 (733)
.+.-+.+++++++.+ +-+......++..+.+..+.++..+-|+++... .| +...|..+++.... .-.+++.
T Consensus 47 ~E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHH
Confidence 355567788877754 334455667777777777778888888888766 33 45566666555433 2234555
Q ss_pred HHHHHhcC-------CC-----CC-----h---hhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 645 ERVINSQH-------IQ-----AR-----S---DNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 645 ~~~~~~~~-------~~-----~~-----~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
..+|.+.. .. ++ . ..+..+...+...|..+.|..+++.+++.+
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55544321 11 11 1 122334444568999999999999999965
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.54 E-value=70 Score=23.96 Aligned_cols=40 Identities=3% Similarity=0.002 Sum_probs=31.3
Q ss_pred HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHH
Q 004733 432 AKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGL 472 (733)
Q Consensus 432 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 472 (733)
...|+.+.|.+++..++ +.+..|..++.++...|...-|.
T Consensus 47 ~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 47 ENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred cccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 35688888888888888 77888888888888877765553
No 412
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.44 E-value=1e+02 Score=29.03 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=8.9
Q ss_pred HHHHHhccCCCCchHHH
Q 004733 679 IAGLLLEREQDKPSVYV 695 (733)
Q Consensus 679 ~~~~~~~~~p~~~~~~~ 695 (733)
++--....+|-.|+.+-
T Consensus 266 LyLLv~R~DPA~Pss~p 282 (309)
T PF07163_consen 266 LYLLVVRLDPASPSSLP 282 (309)
T ss_pred HHHHheeecCCCCCcch
Confidence 34445556666655433
No 413
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.28 E-value=1.5e+02 Score=27.27 Aligned_cols=80 Identities=5% Similarity=-0.086 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCchH-HHHHHHHhhhcCChHHHHHHHHh-cCCCCChhhHHHHH-HHHHhhCCHHHHHHH
Q 004733 603 GLVDDGTRIFDSMVNDYGFIPAEDH-LSCMLDLLGRAGYLDEAERVINS-QHIQARSDNWWALF-SACAAHGNLRLGRII 679 (733)
Q Consensus 603 ~~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~ 679 (733)
..++.|+..|.+.+ .+.|+..+ |..=+.++.+..+++.+..=..+ +...|+..--..++ .+......++.|+..
T Consensus 24 k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34444444444444 23444432 23334444444555444433222 22344433222222 223344445555555
Q ss_pred HHHHhc
Q 004733 680 AGLLLE 685 (733)
Q Consensus 680 ~~~~~~ 685 (733)
++++..
T Consensus 101 Lqra~s 106 (284)
T KOG4642|consen 101 LQRAYS 106 (284)
T ss_pred HHHHHH
Confidence 555533
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.77 E-value=84 Score=24.89 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHH
Q 004733 454 TWNTLINGFLLNGFPVQGLQHFSELLM 480 (733)
Q Consensus 454 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 480 (733)
-|..++..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999999877
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.76 E-value=35 Score=30.60 Aligned_cols=36 Identities=11% Similarity=-0.083 Sum_probs=22.0
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQ 688 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 688 (733)
..|++..+..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 355666666666666666666666666666666666
No 416
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.30 E-value=2.4e+02 Score=29.14 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCcc
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQPGC 728 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 728 (733)
-+.++.+..++..+..-.+.++-...+.+....+-++.++..|++.+|.+++. ..++.++||.
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g~ 274 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAGG 274 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccCc
Confidence 34566777788888888888888888888888888999999999999998774 5666666663
No 417
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.83 E-value=64 Score=26.05 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 004733 574 SCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCML 632 (733)
Q Consensus 574 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 632 (733)
+-+.....-. +.|++......+++|.+.+++..|.++|+.+..+ ..+....|..++
T Consensus 70 kglN~l~~yD-lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 70 KGLNNLFDYD-LVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHhhhccc-cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3444444445 6777777777888888888888888888877655 333333454444
No 418
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.50 E-value=1.3e+02 Score=27.66 Aligned_cols=108 Identities=16% Similarity=0.072 Sum_probs=55.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCC
Q 004733 563 YAQHGEGKEAVSCFKAMQDVGRIKPDQA--TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGY 640 (733)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 640 (733)
+...|+++.|+++.+-++++|...|+.. ++-.++ .++.........+. |-..++.....+...-.....
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~~dm 163 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASA-GESVEPYFLRVFLDLTTEWDM 163 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHc-CCCCChHHHHHHHHHHhcCCC
Confidence 3467999999999999999984445432 121111 12222222222233 434444433332222221111
Q ss_pred hHHHHHHHHhcCCCCChhhHHHHHHHHH---------hhCCHHHHHHHHHHHhccCCCC
Q 004733 641 LDEAERVINSQHIQARSDNWWALFSACA---------AHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 641 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
.+++. ...+......+. ..++...|..+++++.+++|.-
T Consensus 164 pd~vr-----------AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 164 PDEVR-----------AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred ChHHH-----------HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 22221 222333444442 3457788999999999999864
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.24 E-value=12 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHH
Q 004733 239 VVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLV 284 (733)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 284 (733)
++...++++.++....|-.-.-.+|.++.+.|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444443323444445667788888888888888877755
No 420
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=56.20 E-value=2.4e+02 Score=28.74 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSPR---NIITWNTLINGFLLNGFPVQGLQHFSELLMSE 482 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 482 (733)
..|+.-|...|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-...+.++++....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 46788899999999999999988643 34678888888888888888888888877766
No 421
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=55.19 E-value=2.1e+02 Score=27.89 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh------ccCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhhcCC
Q 004733 568 EGKEAVSCFKAMQDVGRIKPDQATFTAVLSACS------HAGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGRAGY 640 (733)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~------~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 640 (733)
-++++..++++...++ .|-+......|.++- ..-+|.....+|+.+... .|++. ++|. ..++.+..-
T Consensus 271 lI~eg~all~rA~~~~--~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNR-AVAla~~~G 344 (415)
T COG4941 271 LIDEGLALLDRALASR--RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNR-AVALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehH-HHHHHHhhh
Confidence 4577888888888887 477777777776553 234677778888877754 55544 3333 233444445
Q ss_pred hHHHHHHHHhcCCCCChhhH----HHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHH
Q 004733 641 LDEAERVINSQHIQARSDNW----WALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVL 696 (733)
Q Consensus 641 ~~~A~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 696 (733)
.+.++..++.+...|....| ..-...+.+.|..++|...|+++..+.++...--..
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 66777777766645443332 233445778999999999999999988877654443
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.61 E-value=47 Score=29.78 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 004733 586 KPDQATFTAVLSACSHAGLVDDGTRIFDSMV 616 (733)
Q Consensus 586 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 616 (733)
.|+...|..++.++...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555444444455555555544444444
No 423
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.45 E-value=97 Score=23.50 Aligned_cols=45 Identities=24% Similarity=0.148 Sum_probs=29.5
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 677 RIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 677 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
...++...+.+|+|......++..+...|++++|.+.+-++.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344566666777777777777777777777777777776666543
No 424
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.10 E-value=96 Score=25.39 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 004733 325 VSNAAITMYSSCGKIDEACMIFAR 348 (733)
Q Consensus 325 ~~~~li~~~~~~g~~~~a~~~~~~ 348 (733)
.|......+...|++++|.++|+.
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345566777888899999888864
No 425
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=53.08 E-value=2.2e+02 Score=27.37 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhCCCchHHH
Q 004733 453 ITWNTLINGFLLNGFPVQGL 472 (733)
Q Consensus 453 ~~~~~li~~~~~~~~~~~a~ 472 (733)
..|..|+.+++..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 46888888888888877544
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.76 E-value=2e+02 Score=29.21 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=27.2
Q ss_pred HHhcCCHHHHHHHHHhcCCC--C-h--hhHHHHHHHHHh--cCChHHHHHHHHHHHH
Q 004733 532 YAKCGDLDCSLRVFNMMIEK--D-T--ISWNALISAYAQ--HGEGKEAVSCFKAMQD 581 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~~--~-~--~~~~~l~~~~~~--~~~~~~A~~~~~~~~~ 581 (733)
+...+++..|.++|+.+... + . ..+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33566777777777766532 1 1 123444445543 3356666666666654
No 427
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.67 E-value=4e+02 Score=30.38 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 004733 454 TWNTLINGFLLNGFPVQGLQHFSELLMS 481 (733)
Q Consensus 454 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 481 (733)
-|..|+..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 5788899999999999999999988763
No 428
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.14 E-value=2.2e+02 Score=27.22 Aligned_cols=112 Identities=6% Similarity=0.062 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCC-----CChhhHHHHHHHHHh-cC-ChHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHhccCCHHHHH
Q 004733 538 LDCSLRVFNMMIE-----KDTISWNALISAYAQ-HG-EGKEAVSCFKAMQDV-GRIKPDQATFTAVLSACSHAGLVDDGT 609 (733)
Q Consensus 538 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~-~~-~~~~A~~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~A~ 609 (733)
+-+|+++|+.... .|...-..+++.... .+ ....-.++.+-+... + ..++..+....+..++..++|.+-.
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~-~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFS-KSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccc-cCCChhHHHHHHHHHHhcccHHHHH
Confidence 4566677763221 233444444444443 11 233333444444433 2 4677888889999999999999999
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 610 RIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 610 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
++|+......+..-|...|..+++...+.|+..-...++++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99998876545566788999999999999999999888875
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.75 E-value=82 Score=27.55 Aligned_cols=53 Identities=13% Similarity=0.350 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHhhcCCCCC--chHHHH-----HHHHhhhcCChHHHHHHHHhcCCCCChh
Q 004733 605 VDDGTRIFDSMVNDYGFIPA--EDHLSC-----MLDLLGRAGYLDEAERVINSQHIQARSD 658 (733)
Q Consensus 605 ~~~A~~~~~~~~~~~~~~p~--~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 658 (733)
++.|+.+|+.+.+... .|. ...... .+-.|.+.|.+++|.+++++.-..|+..
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~ 144 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQ 144 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCch
Confidence 5677777777776522 111 111111 2334555666666666666554444433
No 430
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.25 E-value=3.2e+02 Score=28.83 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=56.0
Q ss_pred HHHHHcccccCchh--hHhHHHH-----HhhccChHHHHHHHHhcCCCCc---chhhHHHHHhh-ccCChhHHHHHhccC
Q 004733 81 AYALRAGLKAYPHV--ANTILSL-----YKNARDLVSVKRVFSEIQNPDV---YSWTTFLSACT-KMGHVDYACEVFDKM 149 (733)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~-~~g~~~~a~~~~~~~ 149 (733)
+.+++.|..++... ....+.. ....|+.+-+.-+++.+..++. ...+.+..+.. ..|+.+-+..+++.-
T Consensus 52 k~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g 131 (480)
T PHA03100 52 KILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG 131 (480)
T ss_pred HHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcC
Confidence 33445566554322 2234444 5556666666666666654322 22333332222 667777666666644
Q ss_pred CCCChh--hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHhhccCchHHH
Q 004733 150 PDRDLP--VYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNY---SFASVLSVCDAGLLEFG 207 (733)
Q Consensus 150 ~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~a 207 (733)
...+.. .-...+...++.|. .-.++.+.+.+.|..++.. -.+.+..++..|+.+.+
T Consensus 132 ~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv 192 (480)
T PHA03100 132 ANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVI 192 (480)
T ss_pred CCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHH
Confidence 332211 11123333444441 1233444455556554332 22333334455544433
No 431
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.22 E-value=1.2e+02 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
|..++..|...|..++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55556666666666666666666555
No 432
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=50.94 E-value=3.7e+02 Score=29.52 Aligned_cols=184 Identities=10% Similarity=0.049 Sum_probs=99.2
Q ss_pred CCcccHHHHHHHHhccchhhhhhhHHHHHHH-ccccc--CchhhHhHHHHHh-hccChHHHHHHHHhcCC----CCc---
Q 004733 55 PDIYSLSTTLAACANLRNAAFGNQLHAYALR-AGLKA--YPHVANTILSLYK-NARDLVSVKRVFSEIQN----PDV--- 123 (733)
Q Consensus 55 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~----~~~--- 123 (733)
.+...|..||+.- .++++-+.+ ..++| ...++-.+...|. ...+++.|+..+++... ++-
T Consensus 28 ~~l~~Y~kLI~~a---------i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIATA---------IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHHH---------HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 3444566666542 334444442 22222 3455566666666 66788888888887643 111
Q ss_pred --chhhHHHHHhhccCChhHHHHHhccCCCC----Ch----hhHHHH-HHHHhhcCChhHHHHHHHHHHHcC---CCCCh
Q 004733 124 --YSWTTFLSACTKMGHVDYACEVFDKMPDR----DL----PVYNAM-ITGCTENGYEDIGIGLFREMHKLD---VRRDN 189 (733)
Q Consensus 124 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~----~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~ 189 (733)
.....++..+.+.+... |.+.+++..+. .. ..+..+ +..+...+++..|.+.++...... ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 11233455566655555 77777665421 11 123333 223333478888888888875532 22333
Q ss_pred hhHHHHHHhh---ccCchHHHHHHHHHHHHhCC---------CCchHHHHHHHHHhH--hcCChHHHHHHHHh
Q 004733 190 YSFASVLSVC---DAGLLEFGRQLHSLVTKSGF---------SCLVSVVNALITMYF--NCGNVVDACKVFEE 248 (733)
Q Consensus 190 ~~~~~ll~~~---~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~~~~~~a~~~~~~ 248 (733)
..+..++.+. ..+..+.+.+.+..+..... .|...+|..+++.++ ..|+++.+...+++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444443 56667777777766643221 345666777776654 56776666665554
No 433
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.97 E-value=2.8e+02 Score=27.86 Aligned_cols=173 Identities=12% Similarity=0.140 Sum_probs=97.8
Q ss_pred hcCCHHHHHHHHHhcCC----CChhhHHHHHH--------HHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHH
Q 004733 534 KCGDLDCSLRVFNMMIE----KDTISWNALIS--------AYAQHGEGKEAVSCFKAMQDVGRIKPDQ----ATFTAVLS 597 (733)
Q Consensus 534 ~~~~~~~A~~~~~~~~~----~~~~~~~~l~~--------~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~ll~ 597 (733)
...++.+|.++-+.... -+..+++.+.. +|-..|+.......+........+.-|. ...|.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 35678888877766543 35555554432 2335566666666665554432244443 34677888
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchH---H----HHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHHHHh
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDH---L----SCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWALFSACAA 669 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~---~----~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~ 669 (733)
.|...+.++.|..+..+.. -|+..+ + -.+...-.-++++..|.+.|-... ..|.... ++.-.
T Consensus 218 ~yL~n~lydqa~~lvsK~~-----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a----lGf~q- 287 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV-----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA----LGFRQ- 287 (493)
T ss_pred HHhhhHHHHHHHHHhhccc-----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh----hhHHH-
Confidence 8999999999988877664 333322 1 223444556778888888776544 4454222 11111
Q ss_pred hCCHHHHHHHHHHHhccCCC-----C------chHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 670 HGNLRLGRIIAGLLLEREQD-----K------PSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 670 ~g~~~~A~~~~~~~~~~~p~-----~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.+.+-.-+.+.+.---|+ . -..|+.|.. -.+.|+.++..+++++.+.
T Consensus 288 --~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~-AVr~gdlkkF~~~leq~k~ 345 (493)
T KOG2581|consen 288 --QVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQ-AVRLGDLKKFNETLEQFKD 345 (493)
T ss_pred --HHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHH
Confidence 122222333333333352 2 245677765 4678888888888776554
No 434
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.58 E-value=40 Score=34.00 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=40.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChH
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWE 708 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 708 (733)
-.|++.++-.|++..|+++++.+...... . ....-+-..++++++|-+|...+++.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~-l-----------------------~~~V~~~~is~~YyvGFaylMlrRY~ 181 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKG-L-----------------------YTKVPACHISTYYYVGFAYLMLRRYA 181 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccch-h-----------------------hccCcchheehHHHHHHHHHHHHHHH
Confidence 34555666667777777766665521110 0 01122335667888888888889999
Q ss_pred HHHHHHHHH
Q 004733 709 EAANIRELL 717 (733)
Q Consensus 709 ~A~~~~~~~ 717 (733)
+|.+.|...
T Consensus 182 DAir~f~~i 190 (404)
T PF10255_consen 182 DAIRTFSQI 190 (404)
T ss_pred HHHHHHHHH
Confidence 888888765
No 435
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=49.56 E-value=2.1e+02 Score=26.20 Aligned_cols=92 Identities=20% Similarity=0.249 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---CHHHH--HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKP---DQATF--TAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLS 629 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p---~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 629 (733)
-+|.|+--|.-...+.+|-+.|..- .| +.| |..++ ..-+......|+.++|++........ -+.-|.+.+-
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~e--~~-i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAKE--SG-IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhccc--cC-CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 4555555555555555555555442 22 333 22222 23444556677777777776666544 3333433332
Q ss_pred HHHH----HhhhcCChHHHHHHHHh
Q 004733 630 CMLD----LLGRAGYLDEAERVINS 650 (733)
Q Consensus 630 ~l~~----~~~~~g~~~~A~~~~~~ 650 (733)
.|.. =+.+.|..++|+++.+.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2221 13566667777776654
No 436
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.26 E-value=52 Score=31.21 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=30.6
Q ss_pred hhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHH
Q 004733 636 GRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYV 695 (733)
Q Consensus 636 ~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 695 (733)
.+.|+.++|..+|+... ..|+ +.....+....-.+++.-+|-+.|-+++..+|.+..++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 34566666666665433 3333 223333333334445555666666666666666555433
No 437
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.23 E-value=93 Score=23.84 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHH
Q 004733 208 RQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVM 262 (733)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 262 (733)
.+.++.+...+....+.....|.-.|.+.|+-+.|.+-|+.-+..-|...+|.-+
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDF 111 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHH
Confidence 3345555555444444555567777889999999999999888777776666443
No 438
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.13 E-value=3.7e+02 Score=28.59 Aligned_cols=128 Identities=10% Similarity=0.015 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhcCChhHHHHHH-------HHHHHcCCCCC-------------hhhHHHHH---Hhh-ccCchHHHHHHH
Q 004733 156 VYNAMITGCTENGYEDIGIGLF-------REMHKLDVRRD-------------NYSFASVL---SVC-DAGLLEFGRQLH 211 (733)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~-------~~m~~~~~~~~-------------~~~~~~ll---~~~-~~~~~~~a~~~~ 211 (733)
+.-.|...+-.+|+.+-+.++. ++...-.+.|. ..-|..+. ..+ +.|-+..|.++.
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4444555677777766555544 44433322222 22233332 233 789999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHhH-hcCChHHHHHHHHhhhc-----CCCCccchH-HHHHHHHhcCC---hHHHHHHHHH
Q 004733 212 SLVTKSGFSCLVSVVNALITMYF-NCGNVVDACKVFEEAKG-----YVCDHISYN-VMMDGLASVGR---VEEALIRFRD 281 (733)
Q Consensus 212 ~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~-----~~~~~~~~~-~li~~~~~~g~---~~~a~~~~~~ 281 (733)
+.+.+....-|+.....+|+.|+ ++.++.-.+++++.... .-|| ..|+ .+...|.+... -..|+..+.+
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~q 444 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQ 444 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 99998876667877778888876 67888888888887542 2233 3344 34444544443 3445555555
Q ss_pred HHH
Q 004733 282 MLV 284 (733)
Q Consensus 282 m~~ 284 (733)
...
T Consensus 445 Al~ 447 (665)
T KOG2422|consen 445 ALK 447 (665)
T ss_pred HHH
Confidence 443
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.12 E-value=35 Score=23.61 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=13.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHh
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVN 617 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~ 617 (733)
-..++.++...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555555555555555555543
No 440
>PHA02875 ankyrin repeat protein; Provisional
Probab=47.92 E-value=3.3e+02 Score=28.01 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=59.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCCccc--HHHHHHHHhccchhhhhhhHHHHHHHcccccCch--hhHhHHHHHh
Q 004733 28 LANLSRSGHYQDALHLFVQIHSSHKLKPDIYS--LSTTLAACANLRNAAFGNQLHAYALRAGLKAYPH--VANTILSLYK 103 (733)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 103 (733)
|..-++.|+.+-+..+++ .|..|+... ..+.+..++..|+.+. .+.+++.|..|+.. .....+....
T Consensus 6 L~~A~~~g~~~iv~~Ll~-----~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 6 LCDAILFGELDIARRLLD-----IGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAV 76 (413)
T ss_pred HHHHHHhCCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHH
Confidence 334456677765544443 255555432 2333444455666553 44555667665432 2234566667
Q ss_pred hccChHHHHHHHHhcCCCCcc---hhhHHHHHhhccCChhHHHHHhccCC
Q 004733 104 NARDLVSVKRVFSEIQNPDVY---SWTTFLSACTKMGHVDYACEVFDKMP 150 (733)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (733)
..|+.+.++.+++.+...+.. .-...+...+..|+.+-+..+++.-.
T Consensus 77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga 126 (413)
T PHA02875 77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA 126 (413)
T ss_pred HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 788888888888876432111 11223333445566655555555433
No 441
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.90 E-value=28 Score=38.07 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=23.7
Q ss_pred hcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHH
Q 004733 637 RAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLL 683 (733)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 683 (733)
.+|+++.|++.-.++. +...|..|......+|+.+-|+-.|++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4555555555554432 4455555555555555555555555543
No 442
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.70 E-value=82 Score=24.14 Aligned_cols=32 Identities=6% Similarity=-0.185 Sum_probs=17.5
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 667 CAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 667 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
|...|+.+.|.+-++.-..+.|++....+.|.
T Consensus 82 ys~~G~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 82 YSNSGKDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred HhhcCChHHHHHHHHHhhhhCccchhHHHHHH
Confidence 45555555555555555555555555544443
No 443
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.57 E-value=1.4e+02 Score=23.51 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 004733 530 TLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVG 583 (733)
Q Consensus 530 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 583 (733)
..+...|++++|...=.....||...|-+|-. .+.|-.+++...+.++-..|
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34556677777744444444566666654432 45666666666666666555
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.66 E-value=70 Score=20.71 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=29.5
Q ss_pred HHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004733 162 TGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLS 197 (733)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 197 (733)
....+.|-..++..+++.|.+.|+..+...|..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 334577888899999999999999998888877765
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.53 E-value=37 Score=32.37 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.2
Q ss_pred CCccc-hHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004733 254 CDHIS-YNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVM 298 (733)
Q Consensus 254 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 298 (733)
||..+ |+..|....+.||+++|+.++++.++.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 45544 6799999999999999999999999999887777775443
No 446
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.17 E-value=47 Score=33.78 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=72.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhh
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVL-SACSHAGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGR 637 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~ 637 (733)
...+...++++.|..++.++++ +.||...|-..= .++.+.+++..|+.-+..+.+. .|+.. .|-.=..++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMA 84 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHh
Confidence 4456677899999999999999 678877654443 6888999999999888877755 45421 22222344555
Q ss_pred cCChHHHHHHHHhcC-CCCChhhHHHHHHHHHh
Q 004733 638 AGYLDEAERVINSQH-IQARSDNWWALFSACAA 669 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~ 669 (733)
.+++.+|+..|+... ..|+..-....+.-|-.
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 667778888777765 67777766666655543
No 447
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.03 E-value=2.5e+02 Score=26.14 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACS-HAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR 637 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (733)
++..+-+.+++++....++++...+ ...+..--+.+-.+|- ..|..-.+++++..+.+...-..+ .....++.-|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 4556667788888888888888765 4445544444444542 233344556666555544111111 222222222211
Q ss_pred c------CChHHHHHHHHhcC----CCCChhh-HHHHHHHH----Hh--hC-----CHHHHHHHHHHHhc-----cCCCC
Q 004733 638 A------GYLDEAERVINSQH----IQARSDN-WWALFSAC----AA--HG-----NLRLGRIIAGLLLE-----REQDK 690 (733)
Q Consensus 638 ~------g~~~~A~~~~~~~~----~~~~~~~-~~~l~~~~----~~--~g-----~~~~A~~~~~~~~~-----~~p~~ 690 (733)
. .--.+.+.+++... ..+.... |..+-+=| +. .| -.+.|...|+.+.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 0 11234444444422 1111111 11111111 11 11 13567777777665 56667
Q ss_pred chHHH---HHHH-HHHhcCChHHHHHHHHHHHhCCC
Q 004733 691 PSVYV---LLSN-IYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 691 ~~~~~---~l~~-~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
|.-+- ..+. .|...|+.++|.++.++..+..+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 65322 2222 23457999999998887765443
No 448
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.96 E-value=2.4e+02 Score=25.88 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCC---Cccch--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 004733 220 SCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVC---DHISY--NVMMDGLASVGRVEEALIRFRDMLVASLRPSE 291 (733)
Q Consensus 220 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 291 (733)
.+...-+|.|+--|.-...+.+|.+.|..-.++.| |..++ ..-|......|+.++|++.++++-..-+..|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 44555566777666666667777777777555444 33332 34567778999999999998887644333443
No 449
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.07 E-value=65 Score=30.29 Aligned_cols=55 Identities=20% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 665 SACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 665 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.++.+.++++.|....++.+.++|+++.-+.--|.+|...|-..-|++-++-..+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3456666677777777777777777776666666667777766666666655443
No 450
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.75 E-value=60 Score=19.80 Aligned_cols=28 Identities=29% Similarity=0.232 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 692 SVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 692 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.+|..|+.+-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888888888888887776544
No 451
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.71 E-value=4.7e+02 Score=28.83 Aligned_cols=249 Identities=14% Similarity=0.072 Sum_probs=120.4
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHhH----HHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-
Q 004733 464 LNGFPVQGLQHFSELLMSELRPDEYTL----SVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDL- 538 (733)
Q Consensus 464 ~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 538 (733)
..|+..++.+++.--+-..- +....| ..+.-++.+.+..+...+++....+..-.+....-.+|.-++...|.-
T Consensus 369 H~G~~~~~~~ll~pYLP~~~-~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~ 447 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEA-GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN 447 (929)
T ss_pred eccccchHHHHhhhhCCccC-CCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccccc
Confidence 45666666666665443210 111111 223334555666666777666665544443343334444444444432
Q ss_pred HHHHHHHHhcCCCCh-hhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCHHHHHHHH--HHHhccCCHHHHHHHH
Q 004733 539 DCSLRVFNMMIEKDT-ISWN--ALISAYAQHGEGKEAVSCFKAMQDVGRI-KPDQATFTAVL--SACSHAGLVDDGTRIF 612 (733)
Q Consensus 539 ~~A~~~~~~~~~~~~-~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~p~~~~~~~ll--~~~~~~~~~~~A~~~~ 612 (733)
++..+-+++....|. ++-. .+.-+++-.|... .+.+++|..-- . .-...+...+. -++..-|+-++|..+.
T Consensus 448 ~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya-~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI 524 (929)
T KOG2062|consen 448 EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYA-QETQHEKIIRGLAVGIALVVYGRQEDADPLI 524 (929)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHh-hhhhHHHHHHHHHHhHHHHHhhhhhhhHHHH
Confidence 222233333332222 2111 1222233333221 12333333311 0 11112222222 2455667777888888
Q ss_pred HHhHhhcCCCCCch--HHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHH--HHHhhCCHHHHHHHHHHHhccCC
Q 004733 613 DSMVNDYGFIPAED--HLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFS--ACAAHGNLRLGRIIAGLLLEREQ 688 (733)
Q Consensus 613 ~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~p 688 (733)
++|... . .|-.. -.-++.-+|+-.|+.....+++--....++.+.-++..- ++.-..|.+......+.+.+..-
T Consensus 525 ~el~~d-k-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N 602 (929)
T KOG2062|consen 525 KELLRD-K-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYN 602 (929)
T ss_pred HHHhcC-C-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcC
Confidence 888765 2 33322 223455667777776666666655454555554443332 35566777777777777766543
Q ss_pred CCc--hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 689 DKP--SVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 689 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
... .+-..|+-+|+..|+. +|..+++-|..
T Consensus 603 ~HVRyGaA~ALGIaCAGtG~~-eAi~lLepl~~ 634 (929)
T KOG2062|consen 603 PHVRYGAAMALGIACAGTGLK-EAINLLEPLTS 634 (929)
T ss_pred hhhhhhHHHHHhhhhcCCCcH-HHHHHHhhhhc
Confidence 222 2344566666666664 67888877664
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.54 E-value=3.9e+02 Score=27.59 Aligned_cols=110 Identities=15% Similarity=0.035 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHc---CC-CCChhhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHH
Q 004733 171 DIGIGLFREMHKL---DV-RRDNYSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVF 246 (733)
Q Consensus 171 ~~a~~~~~~m~~~---~~-~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 246 (733)
++...++...... |+ ..+......++..+ .|+...+..+++.....+...+ .+...+++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s-~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~ 216 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA-NGDARRALNLLELAALGVDSIT----------------LELLEEAL 216 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHH
Confidence 4555555554321 33 34444444444433 6777777777776654321111 22222223
Q ss_pred Hhhh-cCCCCccchHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 004733 247 EEAK-GYVCDHISYNVMMDGLAS---VGRVEEALIRFRDMLVASLRPSELTFVSV 297 (733)
Q Consensus 247 ~~~~-~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 297 (733)
.... ....+...+..++.++.+ .++.+.|+.++..|.+.|..|....-..+
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~ 271 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLV 271 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2211 111222334444544444 58999999999999999887765444333
No 453
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.11 E-value=1.9e+02 Score=28.28 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=37.8
Q ss_pred HHhcCCHHHHHHHHHhcC-------CCChhhH--HHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCCHHH-HHHHH
Q 004733 532 YAKCGDLDCSLRVFNMMI-------EKDTISW--NALISAYAQHGEGKEAVSCFKAMQD-----VGRIKPDQAT-FTAVL 596 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~-------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~p~~~~-~~~ll 596 (733)
.-+.++.++|.++++++. +|+.+.| ..+...+...|+..++.+++++..+ .+ ++|+..+ |..+-
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~-v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG-VTSNVHSSFYSLS 163 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC-CChhhhhhHHHHH
Confidence 334456666666666553 3455544 3345556677777777777777766 45 6665443 55544
Q ss_pred H
Q 004733 597 S 597 (733)
Q Consensus 597 ~ 597 (733)
.
T Consensus 164 s 164 (380)
T KOG2908|consen 164 S 164 (380)
T ss_pred H
Confidence 4
No 454
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.75 E-value=1.9e+02 Score=23.69 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHhccC--CCCchHHHHHHHHHHhcCChHHHHHHHH
Q 004733 676 GRIIAGLLLERE--QDKPSVYVLLSNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 676 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 715 (733)
...++..+.... -.-+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666665544 4455667778888888899999988886
No 455
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.07 E-value=52 Score=31.31 Aligned_cols=77 Identities=10% Similarity=0.036 Sum_probs=46.1
Q ss_pred CCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHH-HHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 622 IPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWA-LFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 622 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
.-|+..|...+.-..+.|.+.+...++.++. ..|. .+.|-. ...-+..+++++.+..++.+.+..+|++|.+|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 3344455555544455555555555555443 3333 334432 222356778888888888889899998888876443
No 456
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.99 E-value=3e+02 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHH
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYV 695 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 695 (733)
.|..--+++...++++.-+.+..++++.+-.+-++|+
T Consensus 149 aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 149 AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 3444444455555555555555555555544444444
No 457
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.41 E-value=3.5e+02 Score=27.52 Aligned_cols=55 Identities=5% Similarity=-0.088 Sum_probs=41.6
Q ss_pred HHHhhcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHhh---ccCchHHHHHHHHHHHHh
Q 004733 162 TGCTENGYEDIGIGLFREMHKLDVRRDNY--SFASVLSVC---DAGLLEFGRQLHSLVTKS 217 (733)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~---~~~~~~~a~~~~~~~~~~ 217 (733)
..+...+++..|.++|+.+.+. ++++.. .+..+..++ ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999887 555554 344444444 788999999999987765
No 458
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=41.34 E-value=69 Score=23.92 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChh
Q 004733 120 NPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYED 171 (733)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (733)
+..+.+....-..-....+.+.+.++++.++..+..+|.....++-..|...
T Consensus 27 ~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 27 SRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred hcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3333333333333345566777778887777777777777777777666443
No 459
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.21 E-value=1.9e+02 Score=30.95 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=45.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+.+.-+|....++++|.++++++.+.+|.++-.-.....+....|+-++|+..+...+..-.
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 44555566777788888888888888887777777777777777888888877776665443
No 460
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.15 E-value=38 Score=32.24 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 694 YVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
|+.-+..-.+.||+++|+.+++|.++.|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444444455555555555555555444
No 461
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=40.64 E-value=3.4e+02 Score=26.12 Aligned_cols=68 Identities=9% Similarity=0.164 Sum_probs=34.4
Q ss_pred CChHHHHHHHH-HHHHcCCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHH
Q 004733 501 SSLRHGKQIHG-YVLKNNLISKM----SLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAV 573 (733)
Q Consensus 501 ~~~~~a~~~~~-~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 573 (733)
..+++...... +|.+.++ |+. .+|..++++- .|.+-.++...-.-+....|.-|+.+++..|+.+..+
T Consensus 269 ~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsav----eWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAV----EWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHH----hhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHH
Confidence 34555555444 4444444 443 3455555443 3332222221111122346888888999888877654
No 462
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.54 E-value=6.1e+02 Score=29.02 Aligned_cols=111 Identities=12% Similarity=0.109 Sum_probs=52.6
Q ss_pred hhhHHHHHhhccCChhHHHHHhccCCCCC--h-----hhHHHHHHHHhhcCCh--hHHHHHHHHHHHcCCCC--------
Q 004733 125 SWTTFLSACTKMGHVDYACEVFDKMPDRD--L-----PVYNAMITGCTENGYE--DIGIGLFREMHKLDVRR-------- 187 (733)
Q Consensus 125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-----~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~-------- 187 (733)
-|..|+-.|...|+.++|++++......+ . ..+..+++-+-+.+.. +-.+++-....+....-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 35666667777777777777776655311 1 1233344433333333 33333333332221000
Q ss_pred -----ChhhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHh
Q 004733 188 -----DNYSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFN 235 (733)
Q Consensus 188 -----~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 235 (733)
....-..+++.+.....+.+..+++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 011112233333455555666666666655555555666666666543
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.26 E-value=80 Score=29.68 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=10.7
Q ss_pred HHHHhccCCHHHHHHHHHHhH
Q 004733 596 LSACSHAGLVDDGTRIFDSMV 616 (733)
Q Consensus 596 l~~~~~~~~~~~A~~~~~~~~ 616 (733)
..-|...|++++|.++|+.+.
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 334455555555555555553
No 464
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.05 E-value=3.3e+02 Score=25.82 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 004733 419 TNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIIT 454 (733)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (733)
-++.....+...|.+.|++.+|+..|-.-..++...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~ 123 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFA 123 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHH
Confidence 456677777788888888888777775544333333
No 465
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.82 E-value=9.4e+02 Score=30.98 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=42.1
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
...|-...+...++|+++.|...+-.....--+..+...+...+..||...|..++++..+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 345666667777788888887765544422244455566667778888888888888877643
No 466
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.71 E-value=3.5e+02 Score=29.42 Aligned_cols=351 Identities=9% Similarity=0.010 Sum_probs=0.0
Q ss_pred CchhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHHHHHhccCC----------CCChhhHHHH
Q 004733 91 YPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYACEVFDKMP----------DRDLPVYNAM 160 (733)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~~~~~~l 160 (733)
++..|+ .+..+.-+|.++.|.++++....-... ...+-++.+..+++.|| ..-...|..-
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~s~~~~~---------~~~~~~~~~~~LL~~~P~~~~~~~~s~~~f~~~~~~W 217 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLHSSYQSY---------SLQSAFEALIQLLSSMPRYRPNSGQSESEFSSQWREW 217 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TTTTTTTH---------HHHHHHHHHHHHHTT------------SS-HHHHHHH
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhcccccch---------hHHHHHHHHHHHHHhCCCccccchhhhHHHHHHHHHH
Q ss_pred HHHHhh-------------cCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh--ccCc---hHHHHHHHHHHHHhCCCCc
Q 004733 161 ITGCTE-------------NGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC--DAGL---LEFGRQLHSLVTKSGFSCL 222 (733)
Q Consensus 161 i~~~~~-------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~---~~~a~~~~~~~~~~~~~~~ 222 (733)
=..+.+ ..+.+....++---.+.=......=|..++..+ .... .+.-..++....+.. +++
T Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~~~a~~~~~~~-~~~ 296 (566)
T PF07575_consen 218 KSECRRLRSSSLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEALVALLLYVDPTCKPFELLHEYAQSCLEEF-PPD 296 (566)
T ss_dssp HHHHHHHHHHS---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT------TTTHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHHHHHhheeeCCCcchhhhHHHHHHHHHhcC-CCC
Q ss_pred hHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChH----------HHHHHHHHHHHcCCCCChh
Q 004733 223 VSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVE----------EALIRFRDMLVASLRPSEL 292 (733)
Q Consensus 223 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~~~~~~p~~~ 292 (733)
...--..+-..+-.|+...+++......+ |..+-..+.+.+...|-.+ ...+.+----...+..+..
T Consensus 297 ~~~~~e~~~~~i~~~d~~~vL~~~~~~~~---~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~ 373 (566)
T PF07575_consen 297 STNPLEQILLAIFEGDIESVLKEISSLFD---DWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHS 373 (566)
T ss_dssp TTSTTHHHHHHHHTS--GGGHHHHHHH-----HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TT
T ss_pred CCCHHHHHHHHHHccCHHHHHHHHHHHcc---chhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcc
Q ss_pred hHHHHHHHcc-CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCcccHHHHHHHHHhcCC
Q 004733 293 TFVSVMSACL-CPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--KDIVSWNTMISTYAQRNL 369 (733)
Q Consensus 293 t~~~ll~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~ 369 (733)
.|...+..+. ..+.+....+.+..+-.-.+......++..|.+.|-.+.|.++.+.+.. -...-|..-+..+.+.|+
T Consensus 374 lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d 453 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGD 453 (566)
T ss_dssp THHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 004733 370 GRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSP 449 (733)
Q Consensus 370 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 449 (733)
...+-.+...+.+.....+.... ..+++......-...-+..+....+
T Consensus 454 ~~~v~~i~~~ll~~~~~~~~~~~--------------------------------~~ll~~i~~~~~~~~~L~fla~yre 501 (566)
T PF07575_consen 454 YSLVTRIADRLLEEYCNNGEPLD--------------------------------DDLLDNIGSPMLLSQRLSFLAKYRE 501 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCccc--------------------------------HHHHHHhcchhhhhhhhHHHHHHHH
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004733 450 RNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSS 496 (733)
Q Consensus 450 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 496 (733)
..-..+.|+..+|.+.+-.+...+..|...-...+.++
T Consensus 502 ---------F~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 502 ---------FYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -----------------------------------------------
T ss_pred ---------HHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 467
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=4.7e+02 Score=27.17 Aligned_cols=429 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCCCCc-----ccHHHHHHHHhccc-hhhhhhhHHHHHHHcccccCc---hhhHhHHHH
Q 004733 31 LSRSGHYQDALHLFVQIHSSHKLKPDI-----YSLSTTLAACANLR-NAAFGNQLHAYALRAGLKAYP---HVANTILSL 101 (733)
Q Consensus 31 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~ 101 (733)
+....+.+.|..-+++.+....-.|+. .++..|...+.... ....++.++.+..+....... ...-.|+..
T Consensus 57 ~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql 136 (629)
T KOG2300|consen 57 LRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQL 136 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q ss_pred HhhccChHHHHHHHHhcCC---CCcchhhHHHHHhhcc---------CChhHHHHHhccCCCCChh--hHHHHHHHHhhc
Q 004733 102 YKNARDLVSVKRVFSEIQN---PDVYSWTTFLSACTKM---------GHVDYACEVFDKMPDRDLP--VYNAMITGCTEN 167 (733)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~ 167 (733)
+....|+..|.+++..+.+ +--..|..++..+.+. .+++.+......|.+.... +-+..+..+.
T Consensus 137 ~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFy-- 214 (629)
T KOG2300|consen 137 HIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFY-- 214 (629)
T ss_pred HhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH--
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHH
Q 004733 168 GYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVF 246 (733)
Q Consensus 168 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 246 (733)
.+.-+.-+ ..|+...++..++++.+.--...+..+..=...+....- ..|
T Consensus 215 ------------------------l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~-----~l~ 265 (629)
T KOG2300|consen 215 ------------------------LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSP-----ILF 265 (629)
T ss_pred ------------------------HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCCh-----HHH
Q ss_pred HhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCChhhHHHHHHHccCchhHHHHHHHHHHhC
Q 004733 247 EEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVA--------SLRPSELTFVSVMSACLCPRVGYQVHAQAMKSG 318 (733)
Q Consensus 247 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g 318 (733)
..++...-++-.|..-...-...|-+++|.++-++.... ++.|-...+...+-
T Consensus 266 ~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L------------------- 326 (629)
T KOG2300|consen 266 EWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL------------------- 326 (629)
T ss_pred hhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-------------------
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc-------------CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004733 319 FEAYTSVSNAAITMYSSCGKIDEACMIFARLQE-------------KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGI 385 (733)
Q Consensus 319 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 385 (733)
..++-+-.-.|+..+|++-+..|.+ ........+..-++..|.++.|..-|....+.--
T Consensus 327 --------E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 327 --------EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE 398 (629)
T ss_pred --------HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Q ss_pred CCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHH----
Q 004733 386 RPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLING---- 461 (733)
Q Consensus 386 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---- 461 (733)
.-|...+.. ..+...|.+.|+.+.-.++++.+.+++..++..-..-
T Consensus 399 ~~dl~a~~n------------------------------lnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~ 448 (629)
T KOG2300|consen 399 SIDLQAFCN------------------------------LNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASIL 448 (629)
T ss_pred HHHHHHHHH------------------------------HhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHH
Q ss_pred ------HHhCCCchHHHHHHHHHHHCC-----CCCCHHhHHHHHHHhcccCChHHHHHHHHHHHH-----cCCCCchhHH
Q 004733 462 ------FLLNGFPVQGLQHFSELLMSE-----LRPDEYTLSVALSSCARISSLRHGKQIHGYVLK-----NNLISKMSLG 525 (733)
Q Consensus 462 ------~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 525 (733)
....+++.+|...+++-.+.. .+........+-..+...|+..++.....-... .+++.-...-
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~ 528 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSS 528 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHH
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHh
Q 004733 526 NAMITLYAKCGD--LDCSLRVFNM 547 (733)
Q Consensus 526 ~~l~~~~~~~~~--~~~A~~~~~~ 547 (733)
..+=+.+-..|+ .+...+.|..
T Consensus 529 si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 529 SILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHhCcchhhHHHHHHHH
No 468
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.64 E-value=1.5e+02 Score=22.55 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=8.8
Q ss_pred HhHhcCChHHHHHHHHh
Q 004733 232 MYFNCGNVVDACKVFEE 248 (733)
Q Consensus 232 ~~~~~~~~~~a~~~~~~ 248 (733)
.....|+.++|...+++
T Consensus 50 ~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEE 66 (94)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 34444555555555554
No 469
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=38.12 E-value=2.1e+02 Score=23.04 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 004733 694 YVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
...-+.++...|+.++|.+.|+.
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHH
Confidence 34556678889999999998863
No 470
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.01 E-value=1.7e+02 Score=21.87 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=29.7
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHH
Q 004733 534 KCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEA 572 (733)
Q Consensus 534 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 572 (733)
...+.+.+.++++.++..+..+|..+..++...|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 445678888888888888888888888888777765544
No 471
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=37.84 E-value=3.9e+02 Score=25.96 Aligned_cols=53 Identities=9% Similarity=0.257 Sum_probs=25.7
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
+..+.|+..+|.+.++.+.+.+.+..-..+...|+.++....-+.+...++-+
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666666666666655411111111223455555555555555555443
No 472
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.29 E-value=3.9e+02 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 004733 527 AMITLYAKCGDLDCSLRVFNMMI 549 (733)
Q Consensus 527 ~l~~~~~~~~~~~~A~~~~~~~~ 549 (733)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667888888888888888875
No 473
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.97 E-value=47 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=24.3
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHh
Q 004733 165 TENGYEDIGIGLFREMHKLDVRRDNYSFASVLSV 198 (733)
Q Consensus 165 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 198 (733)
-..|.-.+|-.+|+.|+++|-+||. |+.++..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3457778899999999999988874 5555543
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.90 E-value=1.1e+02 Score=28.77 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=13.8
Q ss_pred HHHHHhhhcCChHHHHHHHHhc
Q 004733 630 CMLDLLGRAGYLDEAERVINSQ 651 (733)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~ 651 (733)
.+..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4455566666666666666654
No 475
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.18 E-value=2.7e+02 Score=26.50 Aligned_cols=95 Identities=8% Similarity=0.001 Sum_probs=54.7
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhcC-----CCCChhhHHHHHHH---HHhhCCHHHHHHHHHHHhccCCCCchH--
Q 004733 624 AEDHLSCMLDLLGRAGYLDEAERVINSQH-----IQARSDNWWALFSA---CAAHGNLRLGRIIAGLLLEREQDKPSV-- 693 (733)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~p~~~~~-- 693 (733)
....+..+.+-|+..++.+.+.+...+.. .....+.+..-++. |....-+++-++..+.+.+.+.+...-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 35567778888888888888887766422 22233333333333 333334566777777777776664321
Q ss_pred HHH-HHHHHHhcCChHHHHHHHHHHH
Q 004733 694 YVL-LSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 694 ~~~-l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
|.. -+--+....++.+|..++-...
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 222 2222334577888887776544
No 476
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.16 E-value=3.8e+02 Score=24.99 Aligned_cols=68 Identities=16% Similarity=-0.031 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHH
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVY 694 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 694 (733)
.+..+..++...|++-++++...++. ..| +...|..-..+....=+..+|..-+.++++++|.-..+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 34455667777777777777776655 233 333555555555555577888888889999888765543
No 477
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.75 E-value=71 Score=30.32 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=33.3
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC
Q 004733 600 SHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR 656 (733)
Q Consensus 600 ~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 656 (733)
.+.|+.++|..+|+..... .|+ +..+..+........+.-+|-..+-+.. ..|.
T Consensus 127 ~~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 4678888888888888754 554 4455555555555556666666655443 4443
No 478
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.45 E-value=3.9e+02 Score=24.69 Aligned_cols=154 Identities=14% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCcchhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCC--------------cccHHHHHHHHh--ccchhhhhhhHH
Q 004733 17 SKELLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPD--------------IYSLSTTLAACA--NLRNAAFGNQLH 80 (733)
Q Consensus 17 ~~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~--~~~~~~~a~~~~ 80 (733)
||++....-.+++.+...+-...+...+--..-.+-...+ +..|..++.++. ..++++.|...+
T Consensus 22 PP~s~~~L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L 101 (226)
T PF13934_consen 22 PPKSDNDLRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL 101 (226)
T ss_pred CccCHHHHHHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh
Q ss_pred HHHHHcccccCchhhHhHHHHHhhccChHHHHHHHHhcCC--CCcchhhHHHHHhhccCChhHHHHHhccCCCCC-hhhH
Q 004733 81 AYALRAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQN--PDVYSWTTFLSACTKMGHVDYACEVFDKMPDRD-LPVY 157 (733)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~ 157 (733)
......+..-..++..+...|+.+.|..+++.... .+......++.. ..++.+.+|...-+...++. ...+
T Consensus 102 -----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~ 175 (226)
T PF13934_consen 102 -----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLF 175 (226)
T ss_pred -----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHH
Q ss_pred HHHHHHHh----hcCChhHHHHH
Q 004733 158 NAMITGCT----ENGYEDIGIGL 176 (733)
Q Consensus 158 ~~li~~~~----~~~~~~~a~~~ 176 (733)
..++..+. +.+..++-.++
T Consensus 176 e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 176 EQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhC
No 479
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.28 E-value=8.7e+02 Score=28.64 Aligned_cols=57 Identities=7% Similarity=0.013 Sum_probs=25.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
|...++.+.+.+-.+.+.++-..+++. ..++ ..+++++.+-+...|.+-+|...+-+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 334444444445555555544444433 2222 11334444555555555555554443
No 480
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.64 E-value=4.9e+02 Score=25.53 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhHhhcCC---CCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHH
Q 004733 605 VDDGTRIFDSMVNDYGF---IPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAG 681 (733)
Q Consensus 605 ~~~A~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 681 (733)
.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....+++..-..++.+.....+.+....+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 45677777777653111 334555566666667777766655565555556666667778888877888877778888
Q ss_pred HHhcc
Q 004733 682 LLLER 686 (733)
Q Consensus 682 ~~~~~ 686 (733)
.+...
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 87774
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.27 E-value=4.8e+02 Score=25.30 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHH
Q 004733 472 LQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLK 515 (733)
Q Consensus 472 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 515 (733)
.++++.|...++.|.-..|.-+.-.+...=.+..+..+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35666666777777777666666666666666667777766654
No 482
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.92 E-value=3.2e+02 Score=26.64 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHhHhhcCCCCCchHHHHHHHHh-hhcCChHHHHHHHHhcC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhc---
Q 004733 611 IFDSMVNDYGFIPAEDHLSCMLDLL-GRAGYLDEAERVINSQH-IQARSDNWWALFSACAAHGNLRLGRIIAGLLLE--- 685 (733)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 685 (733)
+|+-+.+...+..|...++.+...- .+...++++++=.++-. ..--...+......|++.||-+.|.+.+.+..+
T Consensus 56 ~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktv 135 (393)
T KOG0687|consen 56 LYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTV 135 (393)
T ss_pred HHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q ss_pred ---cCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 686 ---REQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 686 ---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
..-+-.-....++..|....-..+-++..+.+.++|
T Consensus 136 s~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 136 SLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 483
>PRK09857 putative transposase; Provisional
Probab=31.90 E-value=3.5e+02 Score=26.27 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 004733 662 ALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIK 724 (733)
Q Consensus 662 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (733)
.++......|+.++-..+.+...+..|......-.+++-+...|.-++++++.++|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344444455666656666666666566655556677777777787788888888998888754
No 484
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.85 E-value=1.1e+02 Score=29.19 Aligned_cols=69 Identities=7% Similarity=-0.075 Sum_probs=56.0
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHH-HHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVL-LSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
...|+..|..++....+.|-+.+--.++-++.+..|.+...|.. -..-|...++++.++.++..-.+-+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 45567778888877788889999999999999999999998776 4455778899999999988655544
No 485
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.63 E-value=2.6e+02 Score=26.94 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=20.8
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 610 RIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 610 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
++|+.+.+. ++.|....+.-+.-.+...=.+.+++.+++.+.
T Consensus 264 EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 444444444 555555555544444444444555555555544
No 486
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.04 E-value=1e+02 Score=23.36 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=24.7
Q ss_pred hccCChhHHHHHhccCCCCChhhHHHHHHHHhhcC
Q 004733 134 TKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENG 168 (733)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 168 (733)
+...+.+.+.++++.++..+..+|..+..++-..+
T Consensus 45 ~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 45 AKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred cCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 34456677777777777777777777777775544
No 487
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.88 E-value=4.4e+02 Score=24.42 Aligned_cols=133 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccC
Q 004733 224 SVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLC 303 (733)
Q Consensus 224 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 303 (733)
......+..|.+.-++.-|...++++-+ +.--.+-+--|.+..+..---++++-.+..++.-+......++
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE----PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii----- 201 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE----PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII----- 201 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh----hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh-----
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc----------------CCcccHHHHHHHHHhc
Q 004733 304 PRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE----------------KDIVSWNTMISTYAQR 367 (733)
Q Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~li~~~~~~ 367 (733)
+...|++..|..-++.-.. |.+.....++..+...
T Consensus 202 -----------------------------fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~ 252 (333)
T KOG0991|consen 202 -----------------------------FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKR 252 (333)
T ss_pred -----------------------------hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhc
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHH
Q 004733 368 NLGRSAILAYLEMQSVGIRPDEFTFGSL 395 (733)
Q Consensus 368 g~~~~a~~~~~~m~~~~~~p~~~~~~~l 395 (733)
++++|.+.+.++-+.|+.|....-+.+
T Consensus 253 -~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 253 -NIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred -cHHHHHHHHHHHHHcCCCHHHHHHHHH
No 488
>PRK12798 chemotaxis protein; Reviewed
Probab=30.42 E-value=6e+02 Score=25.92 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=122.5
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhccCCHHH
Q 004733 532 YAKCGDLDCSLRVFNMMIEKDTISWNALIS---AYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSA-CSHAGLVDD 607 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~ 607 (733)
....|+++-...++..-..++.. +.++. +|. .|+.+++.+.+..+.-.. .++....|..|+.+ .....++..
T Consensus 91 ~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~-~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l~~~~dP~~ 166 (421)
T PRK12798 91 LLSGGNPATLRKLLARDKLGNFD--QRLADGALAYL-SGRGREARKLLAGVAPEY-LPAELGAYLALVQGNLMVATDPAT 166 (421)
T ss_pred HhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHH-cCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHHhcccCHHH
Confidence 34567887777777766544332 22332 343 589999999999987766 67777778888875 456678999
Q ss_pred HHHHHHHhHhhcCCCCCch----HHHHHHHHhhhcCChHHHHHH----HHhcCCCCChhhH-HHHHHHHHhhCCHHHHHH
Q 004733 608 GTRIFDSMVNDYGFIPAED----HLSCMLDLLGRAGYLDEAERV----INSQHIQARSDNW-WALFSACAAHGNLRLGRI 678 (733)
Q Consensus 608 A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~ 678 (733)
|+++|+...- ..|..- .+..-+......|+.+++..+ +++-...|-...+ ..+..+..+.++-..-..
T Consensus 167 Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~ 243 (421)
T PRK12798 167 ALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR 243 (421)
T ss_pred HHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH
Confidence 9999999874 355533 344456667888998887654 4454455555444 445555666655444444
Q ss_pred HHHHHhccCCCC-chHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 679 IAGLLLEREQDK-PSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 679 ~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
+.+-+...+|+. ..+|..++..-.-.|+.+-|.-.-++.+...
T Consensus 244 l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 244 LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 555555556554 4568888888888999999988888777654
No 489
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=30.42 E-value=2e+02 Score=21.21 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=4.7
Q ss_pred ccChHHHHHHHH
Q 004733 105 ARDLVSVKRVFS 116 (733)
Q Consensus 105 ~~~~~~a~~~~~ 116 (733)
.|+++-++.+++
T Consensus 7 ~~~~~~~~~ll~ 18 (89)
T PF12796_consen 7 NGNLEILKFLLE 18 (89)
T ss_dssp TTTHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 333333444443
No 490
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.28 E-value=74 Score=30.94 Aligned_cols=85 Identities=15% Similarity=-0.000 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHHHHHHHHHhhCCHHHHHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWWALFSACAAHGNLRLGRII 679 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 679 (733)
.|.+++|++.+...+.. -+|....|..=..++.+.+++..|+.=+.... ++||.. .|..-..+.+..|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred Ccchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34455555555555533 12223333334445555555555554444322 344432 233333344455666666666
Q ss_pred HHHHhccCC
Q 004733 680 AGLLLEREQ 688 (733)
Q Consensus 680 ~~~~~~~~p 688 (733)
+..+.+++-
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 666655553
No 491
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.90 E-value=71 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004733 462 FLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSS 496 (733)
Q Consensus 462 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 496 (733)
....|.-..|..+|++|++.|-.||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34456677889999999999988874 4444443
No 492
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.69 E-value=7.2e+02 Score=26.59 Aligned_cols=176 Identities=12% Similarity=0.038 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-------CCC-----------------ChhhHHHH---HHHHHhcCChHHHHHHHHH
Q 004733 526 NAMITLYAKCGDLDCSLRVFNMM-------IEK-----------------DTISWNAL---ISAYAQHGEGKEAVSCFKA 578 (733)
Q Consensus 526 ~~l~~~~~~~~~~~~A~~~~~~~-------~~~-----------------~~~~~~~l---~~~~~~~~~~~~A~~~~~~ 578 (733)
-.+.+.+-..|+.+.|..++++. ..| |...|.++ +..+.+.|-+..|.++.+-
T Consensus 288 Lqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKl 367 (665)
T KOG2422|consen 288 LQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKL 367 (665)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 34456677788877766666554 222 22223332 4566788889999998888
Q ss_pred HHHcCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhHhhc--CCCCCchHHHHHHHHhhhcCC---hHHHHHHHHhcC
Q 004733 579 MQDVGRIKPDQATFTAVLSAC-SHAGLVDDGTRIFDSMVNDY--GFIPAEDHLSCMLDLLGRAGY---LDEAERVINSQH 652 (733)
Q Consensus 579 ~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~A~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 652 (733)
+.+.. -.-|+.....+|+.| .++.+++-.+++++...... ..-|+...-..|+..|.+... -+.|...+.++.
T Consensus 368 llsLd-p~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 368 LLSLD-PSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HhhcC-CcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 88843 222455666677765 46777887888777765431 234554444455555554444 345555555443
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHhcC
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLE-REQDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g 705 (733)
.--+.....|+..+....+ .+....+-.-. ..-....++.++..+|+.-.
T Consensus 447 -~~~P~vl~eLld~~~l~~d--a~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~ 497 (665)
T KOG2422|consen 447 -KHHPLVLSELLDELLLGDD--ALTKDLKFDGSSAENSELPALMLLVKLYANRN 497 (665)
T ss_pred -HhCcHHHHHHHHhccCCch--hhhhhhcccccccccccchHHHHHHHHHHhhh
Confidence 1222233344444433322 01111111000 11123445777888777654
No 493
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=29.52 E-value=1.6e+02 Score=21.78 Aligned_cols=6 Identities=17% Similarity=-0.214 Sum_probs=2.1
Q ss_pred HHHHhh
Q 004733 129 FLSACT 134 (733)
Q Consensus 129 l~~~~~ 134 (733)
.+.++.
T Consensus 51 a~~aL~ 56 (88)
T PF13646_consen 51 AARALG 56 (88)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.49 E-value=1.2e+02 Score=21.31 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=25.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 004733 551 KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACS 600 (733)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 600 (733)
+....++.++..++.-.-.+.++..+.++.+.| .-+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g--~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG--SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 344455666666666666666666666666666 234444444444443
No 495
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.35 E-value=4.1e+02 Score=23.67 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 004733 526 NAMITLYAKCGDLDCSLRVFN 546 (733)
Q Consensus 526 ~~l~~~~~~~~~~~~A~~~~~ 546 (733)
|...+.|.+.|..|.|..+++
T Consensus 185 n~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 185 NIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHcCCchHHHHHHh
Confidence 444444455555555554444
No 496
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.30 E-value=4.2e+02 Score=23.69 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=16.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHh
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVN 617 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~ 617 (733)
+....-...+.|++++|..-++++.+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44444555666777777776666644
No 497
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=29.12 E-value=1.3e+02 Score=17.64 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHH
Q 004733 569 GKEAVSCFKAMQDVGRIKPDQATF 592 (733)
Q Consensus 569 ~~~A~~~~~~~~~~~~~~p~~~~~ 592 (733)
++.|..+|++... +.|+..+|
T Consensus 3 ~dRAR~IyeR~v~---~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL---VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH---hCCCchHH
Confidence 3445555555544 33444444
No 498
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.66 E-value=1e+03 Score=28.08 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----ch
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ----ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----ED 626 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~ 626 (733)
-|...++.+-+.+..+.+.++-..+++. ++++. .+++.+..-....|.+-+|...+ .+ .|| ..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~----npdserrrd 1055 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR----NPDSERRRD 1055 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc----CCcHHHHHH
Confidence 3667788888999999999998888775 34443 24566666666777766665433 32 244 33
Q ss_pred HHHHHHHHhhhcCChHH------------HHH-HHHhcC-CCC-ChhhHHHHHHH-HHhhCCHHH-HHHHHHHHhccCCC
Q 004733 627 HLSCMLDLLGRAGYLDE------------AER-VINSQH-IQA-RSDNWWALFSA-CAAHGNLRL-GRIIAGLLLEREQD 689 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~------------A~~-~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~-A~~~~~~~~~~~p~ 689 (733)
.+..++-.+..+|.++. ... +++... ..| ....|..++.+ +...+++.+ |--+|+.+..+..+
T Consensus 1056 cLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1056 CLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 56677777888887643 333 333222 111 22234444444 566778766 45567777776644
Q ss_pred CchHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCcCCCcccccC
Q 004733 690 KPSVYVLLSNIYAAAGL-WEEAANIRELLKRTGVIKQPGCSWIG 732 (733)
Q Consensus 690 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 732 (733)
....- .++.+.++ +--|+..+.- -+|++.||.
T Consensus 1136 ~~~~~----~~Lekr~ncllaaLNcl~L-------v~p~yawi~ 1168 (1480)
T KOG4521|consen 1136 TCMTP----ELLEKRRNCLLAALNCLSL-------VEPDYAWII 1168 (1480)
T ss_pred ccCCH----HHHHHhhhHHHHHHHHHHh-------cCCCcceee
Confidence 32221 22333333 2333443331 268888873
No 499
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.33 E-value=3.3e+02 Score=22.28 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 004733 326 SNAAITMYSSCGKIDEACMIFAR 348 (733)
Q Consensus 326 ~~~li~~~~~~g~~~~a~~~~~~ 348 (733)
|......+-..|++.+|.++|+.
T Consensus 102 Ye~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 102 YEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHc
Confidence 45556667788899999888863
No 500
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.99 E-value=3.6e+02 Score=28.56 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC-C-CChh---hHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 004733 425 NALISAYAKNERIKQAYQIFHNMS-P-RNII---TWNTLINGFLLNGFPVQGLQHFSELLMS 481 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 481 (733)
..++.-|.+.+++++|..++..|. . -... +.+.+.+.+.+..-..+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 467789999999999999999997 2 1222 3344455555655455555555555543
Done!